Query 009890
Match_columns 523
No_of_seqs 304 out of 1408
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 18:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 8E-153 2E-157 1270.6 47.2 507 6-523 9-516 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 6E-133 1E-137 1075.4 20.8 440 24-523 17-459 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 5.7E-92 1.2E-96 725.0 18.8 297 33-338 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2.1E-35 4.5E-40 326.2 9.5 294 27-329 1-337 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 2.9E-20 6.3E-25 195.7 7.7 265 48-341 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 2E-12 4.3E-17 132.2 18.9 191 27-259 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.2 2.7E-10 5.9E-15 127.5 17.6 160 25-219 276-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.1 1.7E-09 3.7E-14 127.6 18.0 260 25-340 318-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.1 2.6E-09 5.7E-14 125.9 18.6 150 25-219 334-489 (1027)
10 PF00150 Cellulase: Cellulase 99.0 3.1E-09 6.7E-14 105.7 14.3 161 37-219 4-172 (281)
11 COG3250 LacZ Beta-galactosidas 99.0 9.4E-09 2E-13 117.9 15.4 120 25-186 284-409 (808)
12 smart00633 Glyco_10 Glycosyl h 98.4 1.1E-06 2.3E-11 88.4 8.6 117 79-220 3-126 (254)
13 PF03198 Glyco_hydro_72: Gluca 98.3 6.7E-06 1.5E-10 84.8 13.1 156 23-216 7-180 (314)
14 TIGR03356 BGL beta-galactosida 98.0 1.4E-05 3E-10 86.5 8.0 97 56-164 54-151 (427)
15 PLN02705 beta-amylase 97.9 3.2E-05 6.9E-10 85.2 8.4 115 55-181 267-415 (681)
16 PF13364 BetaGal_dom4_5: Beta- 97.9 1.6E-05 3.4E-10 70.6 5.0 54 463-522 21-76 (111)
17 PLN02905 beta-amylase 97.9 4.1E-05 8.9E-10 84.6 8.9 114 56-181 286-433 (702)
18 PF13204 DUF4038: Protein of u 97.8 0.0003 6.4E-09 72.5 14.0 224 31-285 2-274 (289)
19 PLN02801 beta-amylase 97.8 5.2E-05 1.1E-09 82.3 8.2 81 54-138 35-125 (517)
20 PLN02161 beta-amylase 97.8 7.2E-05 1.6E-09 81.2 9.1 82 55-140 116-207 (531)
21 PLN00197 beta-amylase; Provisi 97.7 7.5E-05 1.6E-09 81.7 8.3 82 54-139 125-216 (573)
22 PLN02803 beta-amylase 97.7 8.5E-05 1.8E-09 81.1 8.6 81 56-140 107-197 (548)
23 PF07745 Glyco_hydro_53: Glyco 97.4 0.00043 9.2E-09 72.7 8.4 142 59-219 27-177 (332)
24 PF01373 Glyco_hydro_14: Glyco 97.4 0.00015 3.2E-09 77.3 4.0 74 58-134 18-96 (402)
25 PF00331 Glyco_hydro_10: Glyco 97.3 0.00035 7.5E-09 72.9 6.2 157 43-221 11-180 (320)
26 PF00232 Glyco_hydro_1: Glycos 97.2 0.00029 6.3E-09 76.8 4.2 97 56-164 58-156 (455)
27 PRK15014 6-phospho-beta-glucos 97.0 0.0017 3.6E-08 71.5 8.1 97 56-164 69-168 (477)
28 PF02055 Glyco_hydro_30: O-Gly 96.9 0.0095 2.1E-07 65.9 13.0 333 39-401 74-490 (496)
29 PF14488 DUF4434: Domain of un 96.8 0.014 3E-07 55.5 11.7 135 51-216 15-158 (166)
30 PRK09852 cryptic 6-phospho-bet 96.8 0.0027 5.8E-08 69.9 7.7 96 56-163 71-169 (474)
31 COG3693 XynA Beta-1,4-xylanase 96.8 0.0087 1.9E-07 62.2 10.3 133 65-220 55-194 (345)
32 smart00812 Alpha_L_fucos Alpha 96.8 0.92 2E-05 48.9 26.0 247 51-352 79-343 (384)
33 COG2730 BglC Endoglucanase [Ca 96.7 0.0057 1.2E-07 65.9 8.7 134 35-186 46-193 (407)
34 PLN02998 beta-glucosidase 96.6 0.0018 4E-08 71.5 4.6 100 56-163 82-183 (497)
35 COG3867 Arabinogalactan endo-1 96.6 0.016 3.4E-07 59.8 10.7 124 58-194 65-192 (403)
36 PRK13511 6-phospho-beta-galact 96.6 0.0023 5E-08 70.2 5.0 97 56-160 54-151 (469)
37 PRK09593 arb 6-phospho-beta-gl 96.6 0.0028 6E-08 69.8 5.4 100 56-163 73-175 (478)
38 TIGR01233 lacG 6-phospho-beta- 96.5 0.007 1.5E-07 66.5 8.2 96 56-163 53-149 (467)
39 PLN02814 beta-glucosidase 96.5 0.0026 5.5E-08 70.5 4.5 100 56-163 77-178 (504)
40 PRK09589 celA 6-phospho-beta-g 96.5 0.003 6.6E-08 69.5 4.8 100 56-163 67-169 (476)
41 PF02837 Glyco_hydro_2_N: Glyc 96.5 0.01 2.2E-07 55.2 7.7 75 443-522 35-109 (167)
42 PLN02849 beta-glucosidase 96.3 0.0042 9E-08 68.8 4.9 100 56-163 79-180 (503)
43 COG2723 BglB Beta-glucosidase/ 95.9 0.012 2.5E-07 64.2 5.9 100 56-163 59-161 (460)
44 PF14871 GHL6: Hypothetical gl 95.7 0.063 1.4E-06 49.3 8.8 99 60-163 4-124 (132)
45 KOG2230 Predicted beta-mannosi 95.3 0.13 2.8E-06 57.2 10.7 150 31-220 327-494 (867)
46 COG3934 Endo-beta-mannanase [C 94.1 0.043 9.3E-07 59.8 3.5 157 33-207 3-168 (587)
47 TIGR01515 branching_enzym alph 94.1 0.9 2E-05 51.7 14.3 167 47-217 143-347 (613)
48 TIGR00542 hxl6Piso_put hexulos 93.7 1.1 2.5E-05 45.2 13.0 132 55-214 15-150 (279)
49 PF01229 Glyco_hydro_39: Glyco 93.3 0.45 9.8E-06 52.5 10.0 69 45-116 28-105 (486)
50 PRK05402 glycogen branching en 92.7 1.7 3.6E-05 50.6 13.8 51 62-115 272-335 (726)
51 PRK14706 glycogen branching en 92.3 2.1 4.5E-05 49.1 13.7 51 62-115 174-237 (639)
52 smart00642 Aamy Alpha-amylase 91.1 0.6 1.3E-05 44.3 6.6 65 58-122 21-97 (166)
53 PF02638 DUF187: Glycosyl hydr 90.8 1 2.2E-05 47.0 8.6 117 54-181 17-161 (311)
54 PRK13210 putative L-xylulose 5 90.7 2.9 6.2E-05 42.0 11.6 133 56-214 16-150 (284)
55 PRK12568 glycogen branching en 90.0 6 0.00013 46.1 14.5 54 61-117 275-341 (730)
56 PRK09936 hypothetical protein; 89.9 3.8 8.3E-05 42.5 11.6 59 51-115 33-92 (296)
57 cd00019 AP2Ec AP endonuclease 89.4 3.7 7.9E-05 41.4 11.1 98 56-182 10-108 (279)
58 PF01120 Alpha_L_fucos: Alpha- 89.4 32 0.00069 36.4 19.7 234 60-346 95-344 (346)
59 PLN02447 1,4-alpha-glucan-bran 88.8 11 0.00023 44.3 15.4 61 56-117 251-322 (758)
60 PF01261 AP_endonuc_2: Xylose 88.7 1.1 2.5E-05 42.0 6.5 125 62-213 1-128 (213)
61 PF05913 DUF871: Bacterial pro 87.3 0.9 2E-05 48.5 5.3 72 44-121 2-73 (357)
62 PRK14705 glycogen branching en 87.0 13 0.00027 45.9 15.2 56 60-115 770-835 (1224)
63 PRK12313 glycogen branching en 87.0 8.9 0.00019 43.9 13.4 52 61-115 176-240 (633)
64 PF14307 Glyco_tran_WbsX: Glyc 86.7 7.3 0.00016 41.2 11.7 141 53-220 55-198 (345)
65 TIGR02631 xylA_Arthro xylose i 86.5 14 0.00031 39.8 13.9 91 54-163 30-125 (382)
66 TIGR03234 OH-pyruv-isom hydrox 86.2 10 0.00022 37.5 11.9 43 57-113 15-57 (254)
67 PRK09441 cytoplasmic alpha-amy 85.9 1.3 2.9E-05 48.7 5.9 61 55-115 18-101 (479)
68 PF13200 DUF4015: Putative gly 85.3 3 6.6E-05 43.8 7.8 113 54-167 11-138 (316)
69 PRK13209 L-xylulose 5-phosphat 85.0 8 0.00017 38.9 10.6 127 56-214 21-155 (283)
70 PF00128 Alpha-amylase: Alpha 84.8 0.99 2.2E-05 44.9 3.9 56 60-115 8-72 (316)
71 PRK09997 hydroxypyruvate isome 84.8 15 0.00033 36.6 12.4 42 58-113 17-58 (258)
72 PRK09856 fructoselysine 3-epim 84.4 17 0.00037 36.3 12.6 130 57-213 14-145 (275)
73 TIGR01531 glyc_debranch glycog 83.2 4.4 9.6E-05 50.0 8.9 112 33-150 104-235 (1464)
74 PRK01060 endonuclease IV; Prov 82.7 14 0.0003 37.1 11.2 83 58-163 14-99 (281)
75 cd06593 GH31_xylosidase_YicI Y 81.9 2.6 5.6E-05 43.6 5.7 74 48-121 13-92 (308)
76 PF07172 GRP: Glycine rich pro 81.5 1 2.2E-05 39.2 2.1 19 1-19 1-19 (95)
77 cd06595 GH31_xylosidase_XylS-l 81.3 13 0.00027 38.4 10.5 72 48-119 14-98 (292)
78 PF02065 Melibiase: Melibiase; 81.3 20 0.00043 38.9 12.3 164 49-221 51-236 (394)
79 PRK09989 hypothetical protein; 81.1 15 0.00032 36.7 10.7 43 57-113 16-58 (258)
80 COG1649 Uncharacterized protei 80.9 7.9 0.00017 42.2 9.1 122 54-185 62-210 (418)
81 cd06592 GH31_glucosidase_KIAA1 80.6 12 0.00025 38.9 10.0 69 51-122 25-97 (303)
82 PRK10150 beta-D-glucuronidase; 80.5 2.6 5.6E-05 47.8 5.5 44 475-522 63-106 (604)
83 PF13199 Glyco_hydro_66: Glyco 80.3 37 0.0008 38.6 14.4 158 56-219 118-308 (559)
84 TIGR02402 trehalose_TreZ malto 79.1 3.6 7.9E-05 46.2 6.1 53 60-115 115-180 (542)
85 PF14587 Glyco_hydr_30_2: O-Gl 76.9 19 0.00041 39.0 10.3 118 84-220 93-227 (384)
86 PLN00196 alpha-amylase; Provis 76.5 10 0.00022 41.5 8.4 57 59-115 47-112 (428)
87 PF12876 Cellulase-like: Sugar 76.3 4.2 9.2E-05 34.2 4.3 48 171-218 7-63 (88)
88 TIGR02403 trehalose_treC alpha 76.0 4.3 9.2E-05 45.6 5.5 57 57-115 28-95 (543)
89 PLN02960 alpha-amylase 76.0 93 0.002 37.3 16.3 56 60-115 421-486 (897)
90 PRK12677 xylose isomerase; Pro 75.6 55 0.0012 35.4 13.6 89 57-163 32-124 (384)
91 TIGR02104 pulA_typeI pullulana 75.2 5.1 0.00011 45.6 5.9 55 60-115 168-249 (605)
92 PRK10340 ebgA cryptic beta-D-g 74.9 4.5 9.8E-05 48.9 5.7 40 479-522 111-150 (1021)
93 PF03659 Glyco_hydro_71: Glyco 74.5 13 0.00028 40.2 8.4 54 53-115 14-67 (386)
94 PF02679 ComA: (2R)-phospho-3- 74.2 5.2 0.00011 40.6 5.1 52 55-116 83-134 (244)
95 cd06602 GH31_MGAM_SI_GAA This 74.0 25 0.00054 37.2 10.3 74 48-122 13-93 (339)
96 PRK10785 maltodextrin glucosid 73.9 6.1 0.00013 45.0 6.1 57 59-115 182-246 (598)
97 COG3623 SgaU Putative L-xylulo 73.9 25 0.00053 35.8 9.5 125 55-212 17-150 (287)
98 PRK13398 3-deoxy-7-phosphohept 73.7 16 0.00034 37.5 8.5 80 26-115 15-98 (266)
99 TIGR00677 fadh2_euk methylenet 73.6 12 0.00025 38.7 7.6 109 42-164 130-251 (281)
100 KOG0626 Beta-glucosidase, lact 73.5 5.9 0.00013 44.2 5.7 113 57-179 92-208 (524)
101 smart00518 AP2Ec AP endonuclea 72.7 64 0.0014 32.2 12.6 91 59-179 13-104 (273)
102 cd04908 ACT_Bt0572_1 N-termina 72.5 12 0.00026 29.3 5.9 56 54-113 11-66 (66)
103 PF01791 DeoC: DeoC/LacD famil 72.2 1.9 4E-05 42.9 1.3 53 59-114 79-131 (236)
104 cd06591 GH31_xylosidase_XylS X 71.4 6.6 0.00014 41.0 5.3 72 48-120 13-91 (319)
105 PRK10933 trehalose-6-phosphate 70.8 9 0.00019 43.2 6.5 55 58-115 35-101 (551)
106 TIGR02456 treS_nterm trehalose 70.6 6.4 0.00014 44.1 5.3 56 56-114 28-95 (539)
107 PRK09505 malS alpha-amylase; R 70.3 9 0.00019 44.4 6.4 58 58-115 232-312 (683)
108 COG0296 GlgB 1,4-alpha-glucan 69.0 9 0.0002 43.9 6.0 58 54-114 163-233 (628)
109 PF04914 DltD_C: DltD C-termin 68.6 11 0.00024 34.6 5.5 53 95-166 36-89 (130)
110 TIGR03849 arch_ComA phosphosul 68.3 10 0.00022 38.4 5.6 53 55-117 70-122 (237)
111 PF10435 BetaGal_dom2: Beta-ga 68.0 31 0.00066 33.5 8.7 64 356-419 14-100 (183)
112 KOG1412 Aspartate aminotransfe 66.7 21 0.00046 37.8 7.6 119 54-220 131-250 (410)
113 cd06601 GH31_lyase_GLase GLase 66.5 30 0.00064 36.6 8.9 72 48-120 13-89 (332)
114 PF02449 Glyco_hydro_42: Beta- 66.0 18 0.0004 38.4 7.3 16 58-73 49-64 (374)
115 PRK09525 lacZ beta-D-galactosi 65.7 9 0.00019 46.5 5.4 41 478-522 121-162 (1027)
116 cd02875 GH18_chitobiase Chitob 65.3 76 0.0016 33.8 11.8 57 98-185 67-123 (358)
117 cd06545 GH18_3CO4_chitinase Th 65.1 27 0.00058 35.0 7.9 96 86-210 36-132 (253)
118 cd06603 GH31_GANC_GANAB_alpha 64.6 11 0.00025 39.6 5.4 74 48-122 13-91 (339)
119 PRK14582 pgaB outer membrane N 64.3 39 0.00084 39.2 9.9 109 56-183 334-467 (671)
120 cd06598 GH31_transferase_CtsZ 64.2 13 0.00027 38.9 5.6 68 54-121 22-96 (317)
121 cd06589 GH31 The enzymes of gl 64.0 99 0.0021 31.2 11.9 71 48-119 13-90 (265)
122 PRK14510 putative bifunctional 63.5 11 0.00024 46.5 5.7 56 60-115 191-267 (1221)
123 cd06600 GH31_MGAM-like This fa 61.6 14 0.0003 38.7 5.3 73 48-121 13-90 (317)
124 PLN02361 alpha-amylase 60.9 20 0.00043 39.0 6.5 56 60-115 33-96 (401)
125 COG3589 Uncharacterized conser 60.8 20 0.00043 38.1 6.2 72 44-122 4-76 (360)
126 PF01261 AP_endonuc_2: Xylose 60.6 44 0.00094 31.1 8.1 104 56-187 27-137 (213)
127 COG3915 Uncharacterized protei 60.4 46 0.00099 31.1 7.7 85 1-113 1-87 (155)
128 TIGR02401 trehalose_TreY malto 60.4 20 0.00044 42.4 6.8 64 54-117 14-87 (825)
129 cd06599 GH31_glycosidase_Aec37 59.2 21 0.00046 37.2 6.2 66 55-120 28-98 (317)
130 cd06547 GH85_ENGase Endo-beta- 59.0 17 0.00036 38.7 5.4 114 72-216 32-147 (339)
131 TIGR02100 glgX_debranch glycog 58.9 52 0.0011 38.3 9.8 54 62-115 190-265 (688)
132 PRK09875 putative hydrolase; P 58.2 65 0.0014 33.5 9.5 89 26-134 7-95 (292)
133 PRK00042 tpiA triosephosphate 58.1 20 0.00043 36.5 5.6 49 62-116 79-127 (250)
134 PF01055 Glyco_hydro_31: Glyco 57.9 17 0.00037 39.3 5.5 70 54-124 41-112 (441)
135 COG1306 Uncharacterized conser 57.8 22 0.00049 37.3 5.8 59 54-115 75-144 (400)
136 PRK14507 putative bifunctional 56.5 23 0.00051 45.0 6.8 61 54-117 756-829 (1693)
137 TIGR02103 pullul_strch alpha-1 56.5 21 0.00045 42.8 6.2 21 95-115 404-424 (898)
138 cd06604 GH31_glucosidase_II_Ma 56.4 21 0.00045 37.5 5.6 73 48-121 13-90 (339)
139 PRK14511 maltooligosyl trehalo 56.3 26 0.00057 41.8 6.9 60 54-117 18-91 (879)
140 PF14307 Glyco_tran_WbsX: Glyc 55.9 1E+02 0.0022 32.6 10.7 33 150-186 295-327 (345)
141 cd00311 TIM Triosephosphate is 54.6 26 0.00057 35.4 5.8 49 62-116 77-125 (242)
142 COG5309 Exo-beta-1,3-glucanase 54.3 66 0.0014 33.4 8.5 120 54-221 61-180 (305)
143 KOG0496 Beta-galactosidase [Ca 53.6 6.7 0.00014 44.8 1.4 29 308-336 325-353 (649)
144 PRK03705 glycogen debranching 53.5 23 0.0005 41.0 5.7 55 61-115 184-262 (658)
145 COG1735 Php Predicted metal-de 53.4 54 0.0012 34.5 7.8 122 60-220 52-173 (316)
146 cd06564 GH20_DspB_LnbB-like Gl 52.9 85 0.0018 32.8 9.5 144 54-213 15-196 (326)
147 PRK08673 3-deoxy-7-phosphohept 52.1 38 0.00083 36.0 6.7 80 27-115 82-164 (335)
148 cd06565 GH20_GcnA-like Glycosy 51.3 79 0.0017 32.8 8.9 67 54-123 15-88 (301)
149 smart00481 POLIIIAc DNA polyme 51.0 58 0.0013 25.5 6.2 45 57-114 16-60 (67)
150 PRK09432 metF 5,10-methylenete 50.4 38 0.00081 35.3 6.3 89 61-165 168-267 (296)
151 PLN02877 alpha-amylase/limit d 49.3 33 0.00071 41.4 6.3 21 95-115 466-486 (970)
152 TIGR00433 bioB biotin syntheta 48.3 31 0.00066 35.1 5.2 52 59-114 123-177 (296)
153 TIGR02102 pullulan_Gpos pullul 48.2 31 0.00068 42.3 6.0 21 95-115 555-575 (1111)
154 PRK08645 bifunctional homocyst 48.1 56 0.0012 37.4 7.7 110 38-163 460-578 (612)
155 PF11941 DUF3459: Domain of un 47.3 42 0.00091 27.6 5.0 69 333-403 3-88 (89)
156 TIGR00419 tim triosephosphate 47.2 41 0.0009 33.2 5.7 44 62-115 74-117 (205)
157 cd07381 MPP_CapA CapA and rela 46.8 2.9E+02 0.0062 27.1 11.8 126 59-213 67-210 (239)
158 PF14701 hDGE_amylase: glucano 46.4 1.1E+02 0.0023 33.8 9.2 97 49-151 13-128 (423)
159 COG1082 IolE Sugar phosphate i 46.2 2.8E+02 0.0062 27.2 11.7 51 54-113 13-63 (274)
160 cd06597 GH31_transferase_CtsY 45.8 42 0.00092 35.5 5.9 73 48-120 13-110 (340)
161 PRK14565 triosephosphate isome 45.3 44 0.00096 33.8 5.7 49 62-116 78-126 (237)
162 smart00854 PGA_cap Bacterial c 45.3 2.8E+02 0.0061 27.4 11.4 45 59-112 63-107 (239)
163 PRK09856 fructoselysine 3-epim 44.8 30 0.00065 34.6 4.5 55 57-115 91-149 (275)
164 PLN02429 triosephosphate isome 44.2 44 0.00096 35.3 5.7 49 62-116 140-188 (315)
165 PF02228 Gag_p19: Major core p 44.0 11 0.00024 31.8 0.9 36 54-106 20-55 (92)
166 PRK12331 oxaloacetate decarbox 43.9 47 0.001 36.7 6.1 56 48-115 88-143 (448)
167 PLN02561 triosephosphate isome 43.8 47 0.001 33.9 5.7 49 62-116 81-129 (253)
168 TIGR00676 fadh2 5,10-methylene 43.8 91 0.002 31.8 7.8 110 41-164 125-247 (272)
169 PRK15492 triosephosphate isome 43.6 49 0.0011 33.9 5.8 49 62-116 87-135 (260)
170 TIGR00587 nfo apurinic endonuc 43.5 1.4E+02 0.0031 30.2 9.2 83 59-163 14-98 (274)
171 cd06418 GH25_BacA-like BacA is 43.4 99 0.0021 30.6 7.7 91 54-166 50-141 (212)
172 PF08533 Glyco_hydro_42C: Beta 41.9 32 0.00069 26.7 3.3 37 367-404 8-56 (58)
173 cd07937 DRE_TIM_PC_TC_5S Pyruv 41.9 51 0.0011 33.7 5.7 50 53-114 88-137 (275)
174 PRK12858 tagatose 1,6-diphosph 41.7 34 0.00073 36.5 4.4 65 48-115 99-163 (340)
175 PTZ00333 triosephosphate isome 41.4 56 0.0012 33.4 5.8 49 62-116 82-130 (255)
176 PF14606 Lipase_GDSL_3: GDSL-l 41.1 2.1E+02 0.0047 27.7 9.4 124 39-209 2-131 (178)
177 PRK14567 triosephosphate isome 41.1 56 0.0012 33.4 5.7 49 62-116 78-126 (253)
178 cd06568 GH20_SpHex_like A subg 40.9 2.3E+02 0.0049 29.9 10.5 63 54-116 16-96 (329)
179 cd01299 Met_dep_hydrolase_A Me 40.1 58 0.0013 33.5 5.8 61 54-115 118-180 (342)
180 KOG0622 Ornithine decarboxylas 39.4 45 0.00097 36.5 4.8 67 54-130 191-258 (448)
181 PRK14566 triosephosphate isome 38.9 63 0.0014 33.2 5.7 49 62-116 88-136 (260)
182 KOG1065 Maltase glucoamylase a 38.7 58 0.0013 38.4 5.9 65 55-124 310-380 (805)
183 PF07755 DUF1611: Protein of u 37.8 25 0.00054 36.9 2.7 115 41-220 35-151 (301)
184 cd02742 GH20_hexosaminidase Be 37.5 99 0.0022 32.0 7.1 145 54-212 14-186 (303)
185 PRK06703 flavodoxin; Provision 37.5 1.6E+02 0.0034 26.8 7.7 103 36-163 46-148 (151)
186 COG0149 TpiA Triosephosphate i 37.4 68 0.0015 32.8 5.6 49 62-116 81-129 (251)
187 PRK14040 oxaloacetate decarbox 37.2 49 0.0011 37.9 5.0 53 48-112 89-141 (593)
188 cd00544 CobU Adenosylcobinamid 36.8 2.1E+02 0.0046 27.1 8.7 49 151-207 101-149 (169)
189 PRK13209 L-xylulose 5-phosphat 36.6 1.8E+02 0.0038 29.2 8.6 102 53-184 54-160 (283)
190 COG0366 AmyA Glycosidases [Car 36.5 48 0.001 35.8 4.8 53 60-115 33-97 (505)
191 PF08924 DUF1906: Domain of un 36.4 98 0.0021 28.4 6.1 92 54-165 36-128 (136)
192 PF10731 Anophelin: Thrombin i 36.2 34 0.00074 27.5 2.5 32 1-32 1-36 (65)
193 PRK10658 putative alpha-glucos 36.1 78 0.0017 36.8 6.5 65 55-121 282-351 (665)
194 PRK13210 putative L-xylulose 5 35.6 54 0.0012 32.7 4.7 60 56-116 94-154 (284)
195 cd02871 GH18_chitinase_D-like 35.0 2.6E+02 0.0057 29.0 9.8 87 96-211 61-147 (312)
196 PRK09267 flavodoxin FldA; Vali 34.8 2.4E+02 0.0053 26.1 8.7 74 36-112 44-117 (169)
197 PF00121 TIM: Triosephosphate 34.6 32 0.0007 34.8 2.8 49 62-116 77-125 (244)
198 PF08308 PEGA: PEGA domain; I 34.1 38 0.00083 26.9 2.7 22 501-522 3-24 (71)
199 PLN02784 alpha-amylase 34.0 90 0.002 37.4 6.6 57 59-115 524-588 (894)
200 cd06416 GH25_Lys1-like Lys-1 i 33.9 1E+02 0.0023 29.5 6.1 89 44-135 54-157 (196)
201 PF02606 LpxK: Tetraacyldisacc 33.9 89 0.0019 33.0 6.0 58 35-108 224-281 (326)
202 TIGR02455 TreS_stutzeri trehal 33.8 1.1E+02 0.0024 35.6 7.0 75 54-132 76-175 (688)
203 PLN02540 methylenetetrahydrofo 33.7 1.2E+02 0.0026 34.6 7.4 85 67-165 167-260 (565)
204 COG5520 O-Glycosyl hydrolase [ 33.7 6.4E+02 0.014 27.5 12.1 116 67-210 77-206 (433)
205 PRK10076 pyruvate formate lyas 33.5 2.1E+02 0.0046 28.3 8.3 124 56-213 54-209 (213)
206 KOG3625 Alpha amylase [Carbohy 33.3 38 0.00081 40.6 3.3 57 54-113 140-215 (1521)
207 PF10566 Glyco_hydro_97: Glyco 33.3 1.5E+02 0.0033 30.7 7.4 125 54-184 30-168 (273)
208 cd07944 DRE_TIM_HOA_like 4-hyd 33.0 69 0.0015 32.7 5.0 45 59-115 85-129 (266)
209 COG1523 PulA Type II secretory 32.9 67 0.0015 37.5 5.3 55 61-115 205-285 (697)
210 PLN02763 hydrolase, hydrolyzin 32.8 95 0.0021 37.7 6.7 74 48-122 190-268 (978)
211 PRK09997 hydroxypyruvate isome 32.7 62 0.0013 32.2 4.5 60 56-115 85-144 (258)
212 PRK05265 pyridoxine 5'-phospha 32.7 52 0.0011 33.4 3.8 46 58-121 115-161 (239)
213 cd04882 ACT_Bt0572_2 C-termina 32.5 87 0.0019 23.6 4.4 55 55-111 10-64 (65)
214 PLN03036 glutamine synthetase; 32.1 1E+02 0.0022 34.0 6.3 67 57-129 231-309 (432)
215 PTZ00372 endonuclease 4-like p 31.9 2.4E+02 0.0052 31.0 9.0 83 32-116 149-240 (413)
216 PF01075 Glyco_transf_9: Glyco 31.7 26 0.00056 34.2 1.6 77 38-117 104-194 (247)
217 cd00003 PNPsynthase Pyridoxine 31.7 52 0.0011 33.3 3.7 47 57-121 111-158 (234)
218 KOG1348 Asparaginyl peptidases 31.7 1.8E+02 0.004 31.5 7.8 84 1-88 1-102 (477)
219 PRK08195 4-hyroxy-2-oxovalerat 31.6 84 0.0018 33.3 5.5 44 60-115 92-135 (337)
220 PLN02389 biotin synthase 31.5 73 0.0016 34.4 5.1 52 58-112 177-230 (379)
221 cd08560 GDPD_EcGlpQ_like_1 Gly 31.4 1.4E+02 0.0031 31.9 7.2 53 57-115 246-298 (356)
222 cd00537 MTHFR Methylenetetrahy 31.3 1.1E+02 0.0024 30.9 6.2 85 66-164 157-250 (274)
223 KOG0805 Carbon-nitrogen hydrol 30.9 1.6E+02 0.0034 30.4 6.9 74 96-183 38-122 (337)
224 PF09587 PGA_cap: Bacterial ca 30.8 3.1E+02 0.0067 27.3 9.2 79 32-118 122-226 (250)
225 PF05763 DUF835: Protein of un 30.8 2.1E+02 0.0045 26.4 7.3 106 87-213 1-114 (136)
226 PF07905 PucR: Purine cataboli 30.6 1.8E+02 0.004 25.8 6.7 67 36-115 40-106 (123)
227 KOG1643 Triosephosphate isomer 30.1 78 0.0017 31.6 4.5 49 62-116 79-127 (247)
228 TIGR03217 4OH_2_O_val_ald 4-hy 30.1 94 0.002 32.9 5.5 45 59-115 90-134 (333)
229 PRK14042 pyruvate carboxylase 29.4 1.1E+02 0.0023 35.2 6.2 53 50-114 90-142 (596)
230 CHL00200 trpA tryptophan synth 29.4 1.1E+02 0.0023 31.4 5.6 45 59-117 109-153 (263)
231 cd03789 GT1_LPS_heptosyltransf 29.1 70 0.0015 32.0 4.2 76 42-120 125-212 (279)
232 TIGR01361 DAHP_synth_Bsub phos 28.9 99 0.0022 31.5 5.3 82 25-115 12-96 (260)
233 PRK13962 bifunctional phosphog 28.8 94 0.002 36.0 5.6 49 62-116 474-522 (645)
234 PF04909 Amidohydro_2: Amidohy 28.8 1.7E+02 0.0037 28.4 6.8 64 44-116 74-138 (273)
235 PF00120 Gln-synt_C: Glutamine 28.8 79 0.0017 31.9 4.5 60 55-119 68-139 (259)
236 PF03102 NeuB: NeuB family; I 28.7 67 0.0015 32.5 4.0 65 52-116 52-121 (241)
237 PF00728 Glyco_hydro_20: Glyco 28.5 83 0.0018 32.6 4.8 62 54-115 16-93 (351)
238 TIGR03234 OH-pyruv-isom hydrox 28.4 77 0.0017 31.3 4.4 60 56-115 84-143 (254)
239 KOG0683 Glutamine synthetase [ 28.4 63 0.0014 34.7 3.8 46 82-128 202-259 (380)
240 PF00834 Ribul_P_3_epim: Ribul 28.3 2.5E+02 0.0055 27.5 7.8 98 47-165 61-163 (201)
241 TIGR00542 hxl6Piso_put hexulos 28.3 87 0.0019 31.5 4.8 55 57-115 95-153 (279)
242 PRK10422 lipopolysaccharide co 28.3 88 0.0019 32.7 4.9 64 51-117 197-273 (352)
243 KOG3833 Uncharacterized conser 28.2 67 0.0014 34.2 3.8 54 56-115 443-499 (505)
244 PRK07094 biotin synthase; Prov 28.1 55 0.0012 33.8 3.3 51 59-112 129-182 (323)
245 COG0167 PyrD Dihydroorotate de 28.0 5.8E+02 0.012 27.0 10.8 128 54-221 107-250 (310)
246 cd08185 Fe-ADH1 Iron-containin 28.0 1.2E+02 0.0027 32.2 6.1 67 38-116 25-91 (380)
247 PF15240 Pro-rich: Proline-ric 27.8 37 0.00081 33.0 1.8 31 7-37 1-33 (179)
248 KOG4039 Serine/threonine kinas 27.7 80 0.0017 31.2 4.1 74 50-127 103-180 (238)
249 TIGR01698 PUNP purine nucleoti 27.5 90 0.002 31.6 4.6 40 35-74 47-87 (237)
250 cd04740 DHOD_1B_like Dihydroor 27.4 1.4E+02 0.0031 30.4 6.2 59 54-117 100-163 (296)
251 COG3684 LacD Tagatose-1,6-bisp 27.4 53 0.0011 33.9 2.9 52 61-115 116-167 (306)
252 PRK09860 putative alcohol dehy 27.4 1.3E+02 0.0027 32.4 6.0 65 39-116 32-96 (383)
253 PRK12595 bifunctional 3-deoxy- 27.1 2.6E+02 0.0057 30.0 8.3 82 26-115 106-189 (360)
254 PRK13125 trpA tryptophan synth 27.1 1.2E+02 0.0026 30.3 5.5 47 60-117 92-138 (244)
255 PF03644 Glyco_hydro_85: Glyco 27.1 63 0.0014 33.9 3.5 114 71-216 27-142 (311)
256 PF11790 Glyco_hydro_cc: Glyco 26.9 1E+02 0.0022 30.8 4.9 101 56-165 90-201 (239)
257 TIGR03128 RuMP_HxlA 3-hexulose 26.8 1.4E+02 0.0031 28.5 5.7 41 61-114 68-108 (206)
258 PTZ00372 endonuclease 4-like p 26.8 8.9E+02 0.019 26.7 13.0 79 59-163 144-228 (413)
259 PRK04302 triosephosphate isome 26.5 1.2E+02 0.0027 29.7 5.4 64 43-117 58-123 (223)
260 TIGR00559 pdxJ pyridoxine 5'-p 26.4 74 0.0016 32.3 3.7 45 59-121 113-158 (237)
261 PF08306 Glyco_hydro_98M: Glyc 26.3 49 0.0011 35.0 2.5 88 43-155 105-200 (324)
262 cd06563 GH20_chitobiase-like T 26.2 2.8E+02 0.006 29.4 8.3 60 54-116 16-107 (357)
263 COG1663 LpxK Tetraacyldisaccha 26.1 2.5E+02 0.0053 30.1 7.7 88 37-147 232-323 (336)
264 COG1979 Uncharacterized oxidor 26.1 1.3E+02 0.0029 32.2 5.6 47 58-116 47-93 (384)
265 COG1891 Uncharacterized protei 26.0 23 0.00051 34.5 0.1 66 41-114 116-186 (235)
266 PRK12581 oxaloacetate decarbox 26.0 1.3E+02 0.0029 33.5 5.9 54 50-115 99-152 (468)
267 PRK10964 ADP-heptose:LPS hepto 25.9 99 0.0021 31.8 4.7 76 39-117 178-264 (322)
268 PF07908 D-aminoacyl_C: D-amin 25.5 48 0.001 25.1 1.7 11 510-520 20-30 (48)
269 TIGR02427 protocat_pcaD 3-oxoa 25.1 1.7E+02 0.0037 27.0 5.8 82 38-131 12-94 (251)
270 cd00958 DhnA Class I fructose- 25.1 76 0.0017 31.2 3.6 62 48-115 68-129 (235)
271 TIGR03700 mena_SCO4494 putativ 25.0 60 0.0013 34.4 3.0 52 58-112 149-205 (351)
272 cd08181 PPD-like 1,3-propanedi 24.9 1.5E+02 0.0033 31.3 6.0 67 38-116 25-91 (357)
273 PRK02412 aroD 3-dehydroquinate 24.8 1.8E+02 0.0039 29.4 6.3 32 46-77 140-173 (253)
274 PRK12330 oxaloacetate decarbox 24.8 1.3E+02 0.0028 33.9 5.6 53 50-114 91-143 (499)
275 cd04886 ACT_ThrD-II-like C-ter 24.4 3.1E+02 0.0066 20.5 6.7 59 54-112 8-72 (73)
276 cd07944 DRE_TIM_HOA_like 4-hyd 24.4 1.3E+02 0.0028 30.7 5.2 65 52-116 16-81 (266)
277 cd02874 GH18_CFLE_spore_hydrol 24.2 2.1E+02 0.0046 29.3 6.8 84 65-167 21-104 (313)
278 PF01487 DHquinase_I: Type I 3 24.1 1.7E+02 0.0036 28.7 5.8 64 45-117 117-184 (224)
279 cd06831 PLPDE_III_ODC_like_AZI 24.0 76 0.0017 34.2 3.6 66 53-130 147-215 (394)
280 PF13380 CoA_binding_2: CoA bi 23.9 1.2E+02 0.0026 26.8 4.3 43 54-112 64-106 (116)
281 TIGR03551 F420_cofH 7,8-dideme 23.8 53 0.0012 34.5 2.3 51 59-112 141-196 (343)
282 cd04724 Tryptophan_synthase_al 23.7 1.7E+02 0.0036 29.4 5.7 45 59-117 94-138 (242)
283 COG3320 Putative dehydrogenase 23.6 39 0.00086 36.5 1.3 36 97-133 175-213 (382)
284 PRK13396 3-deoxy-7-phosphohept 23.6 4.2E+02 0.0091 28.5 8.9 75 33-115 93-172 (352)
285 cd07943 DRE_TIM_HOA 4-hydroxy- 23.5 1.3E+02 0.0028 30.3 5.0 45 59-115 88-132 (263)
286 PF11261 IRF-2BP1_2: Interfero 23.5 52 0.0011 25.7 1.5 31 77-107 18-49 (54)
287 PRK08883 ribulose-phosphate 3- 23.4 1.8E+02 0.004 28.8 5.9 54 47-117 62-115 (220)
288 PRK08575 5-methyltetrahydropte 23.3 8.7E+02 0.019 25.4 11.4 17 267-283 272-288 (326)
289 cd04726 KGPDC_HPS 3-Keto-L-gul 23.2 1.9E+02 0.0041 27.4 5.8 45 60-117 68-113 (202)
290 TIGR00262 trpA tryptophan synt 23.2 1.8E+02 0.0038 29.6 5.9 43 59-115 105-147 (256)
291 TIGR03646 YtoQ_fam YtoQ family 23.1 82 0.0018 29.4 3.0 28 42-75 3-31 (144)
292 cd07939 DRE_TIM_NifV Streptomy 23.1 2.3E+02 0.005 28.4 6.7 54 59-113 72-128 (259)
293 cd06594 GH31_glucosidase_YihQ 23.0 2.2E+02 0.0048 29.7 6.7 68 54-121 21-97 (317)
294 TIGR01108 oadA oxaloacetate de 22.7 1.7E+02 0.0037 33.5 6.2 54 50-115 85-138 (582)
295 PRK14582 pgaB outer membrane N 22.7 2.2E+02 0.0048 33.3 7.1 61 53-113 69-137 (671)
296 PF00282 Pyridoxal_deC: Pyrido 22.6 1.5E+02 0.0033 31.7 5.5 71 37-114 139-230 (373)
297 PRK09248 putative hydrolase; V 22.6 2.4E+02 0.0052 28.0 6.6 64 42-117 95-162 (246)
298 PRK09282 pyruvate carboxylase 22.2 1.5E+02 0.0033 33.9 5.7 55 48-114 88-142 (592)
299 PRK08508 biotin synthase; Prov 22.2 1.5E+02 0.0032 30.4 5.1 48 59-111 102-153 (279)
300 cd01019 ZnuA Zinc binding prot 22.2 1.3E+02 0.0027 30.9 4.6 58 37-115 178-235 (286)
301 cd04883 ACT_AcuB C-terminal AC 22.1 3E+02 0.0065 21.2 5.9 54 55-112 12-69 (72)
302 PLN02826 dihydroorotate dehydr 22.0 1.1E+03 0.023 25.9 13.9 59 43-105 188-249 (409)
303 TIGR02201 heptsyl_trn_III lipo 21.9 1.2E+02 0.0027 31.3 4.6 67 50-117 194-271 (344)
304 PF05984 Cytomega_UL20A: Cytom 21.6 1.2E+02 0.0026 26.0 3.5 39 1-39 1-42 (100)
305 cd06547 GH85_ENGase Endo-beta- 21.2 4.3E+02 0.0093 28.1 8.5 83 52-164 45-137 (339)
306 PRK00870 haloalkane dehalogena 21.2 1.9E+02 0.0041 29.0 5.7 66 38-109 46-114 (302)
307 PF02811 PHP: PHP domain; Int 21.1 2.6E+02 0.0057 25.2 6.1 46 57-115 17-62 (175)
308 PLN03244 alpha-amylase; Provis 21.0 1.2E+03 0.027 28.1 12.6 24 93-116 439-462 (872)
309 cd02810 DHOD_DHPD_FMN Dihydroo 21.0 1.7E+02 0.0037 29.6 5.3 60 54-117 109-171 (289)
310 TIGR02195 heptsyl_trn_II lipop 21.0 1.6E+02 0.0034 30.3 5.1 80 38-117 173-262 (334)
311 PF02569 Pantoate_ligase: Pant 20.9 5.1E+02 0.011 27.0 8.7 146 41-220 26-176 (280)
312 cd00019 AP2Ec AP endonuclease 20.9 95 0.0021 31.2 3.4 57 56-116 85-144 (279)
313 PF05706 CDKN3: Cyclin-depende 20.9 3.5E+02 0.0075 26.1 6.9 45 59-113 61-105 (168)
314 PRK10824 glutaredoxin-4; Provi 20.8 57 0.0012 29.3 1.6 51 459-522 33-83 (115)
315 PRK14905 triosephosphate isome 20.6 1.9E+02 0.0042 31.0 5.7 49 62-116 88-136 (355)
316 TIGR02635 RhaI_grampos L-rhamn 20.5 9.4E+02 0.02 26.1 10.9 157 25-215 11-173 (378)
317 PRK08227 autoinducer 2 aldolas 20.4 82 0.0018 32.4 2.8 48 60-113 98-145 (264)
318 cd03174 DRE_TIM_metallolyase D 20.3 1.5E+02 0.0032 29.3 4.6 54 59-115 77-135 (265)
319 PRK09919 anti-adapter protein 20.3 1.6E+02 0.0034 26.7 4.2 14 478-491 30-43 (114)
320 COG1894 NuoF NADH:ubiquinone o 20.2 1.4E+02 0.003 32.7 4.4 62 54-124 107-182 (424)
321 TIGR03471 HpnJ hopanoid biosyn 20.2 1.2E+02 0.0026 33.3 4.2 51 59-113 287-341 (472)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=8.1e-153 Score=1270.55 Aligned_cols=507 Identities=65% Similarity=1.154 Sum_probs=476.0
Q ss_pred hHHHHHHHHHHHHHhhcCCeeEEEecceEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCC
Q 009890 6 ILLLVLCWGFVVLATTSFGANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV 85 (523)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vt~d~~~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~ 85 (523)
+++++++.+++.........+|+||+++|+|||||++|+||+|||||+||++|+|+|+||||+|+|+|+||||||+|||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~ 88 (840)
T PLN03059 9 FLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 88 (840)
T ss_pred hhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCC
Confidence 34444443433322223567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 009890 86 RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (523)
Q Consensus 86 ~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~ 165 (523)
||+|||+|++||++||++|+++||||||||||||||||++||||.||+++|+|++||+||+|+++|++|+++|+++|+++
T Consensus 89 ~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~ 168 (840)
T PLN03059 89 PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSE 168 (840)
T ss_pred CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHhcCCCcceEEccCCCCCCccccCCCCcccCCCCCCCCC
Q 009890 166 KLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYCDQFTPNSNN 245 (523)
Q Consensus 166 ~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~~~ng~~~~~~~~~~~~ 245 (523)
+|++++||||||+|||||||++...++.++++||+||++|++++|++|||+||++.+++++++++|||.+|+.|.++++.
T Consensus 169 ~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~ 248 (840)
T PLN03059 169 KLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDY 248 (840)
T ss_pred ceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCC
Confidence 99999999999999999999987778888999999999999999999999999998889999999999999999998888
Q ss_pred CCceEeeeccccccccCCCCCCCCHHHHHHHHHHHHhcCCeeeeeeeeccCCCCCCCCCCCcccccccCCCCCCcCCCCC
Q 009890 246 KPKMWTENWSGWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIR 325 (523)
Q Consensus 246 ~P~~~tE~~~Gwf~~wG~~~~~r~~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~TSYDy~Api~E~G~~~ 325 (523)
+|+||+|+|+|||++||++++.|+++|+++.++++|++|+|++|||||||||||||++|+++++|||||||||+|+|+++
T Consensus 249 ~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t 328 (840)
T PLN03059 249 KPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPR 328 (840)
T ss_pred CCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCceEEEEEcCCCceEEEEEeCCCCeeEEEEECCeEEEecCeeEEEcC
Q 009890 326 QPKWGHLKDLHKAIKLCEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILP 405 (523)
Q Consensus 326 ~pKy~~lk~lh~~i~~~~~~L~~~~~~~~~lg~~~~~~v~~~~~~~~~~Fl~N~~~~~~~~V~f~~~~~~lp~~svsIlp 405 (523)
+|||.|||+||+++++|+++|+..+|...+||++||+++|...+ .|++|+.|++++.+++|+|+|++|.||||||||||
T Consensus 329 ~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilp 407 (840)
T PLN03059 329 EPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILP 407 (840)
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecc
Confidence 89999999999999999999999999999999999999998766 79999999999999999999999999999999999
Q ss_pred CCCeEEeecceecCcccceeeeeccccccccCCCCCCcceeEeecc-CCCCCCCccccchhhhhhhccCCCceeeEEEeE
Q 009890 406 DCKNVVFNTAKINSVTLVPSFSRQSLQVAADSSDAIGSGWSYINEP-VGISKDDAFTKPGLLEQINTTADQSDYLWYSLS 484 (523)
Q Consensus 406 ~~~~v~~~Ta~v~~q~~~~~~~~~~~~~~~~~~~~~~~~W~~~~E~-~~~~~~~~~~~~~llEq~~~T~D~sDYLWY~T~ 484 (523)
||++++||||++++|++.+++.+. ...++|++++|+ ++.+++..++.++|+||||+|+|+||||||+|+
T Consensus 408 d~~~~lfnta~v~~q~~~~~~~~~----------~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~ 477 (840)
T PLN03059 408 DCKTAVFNTARLGAQSSQMKMNPV----------GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTE 477 (840)
T ss_pred cccceeeeccccccccceeecccc----------cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEE
Confidence 999999999999999877755322 245799999999 566677889999999999999999999999999
Q ss_pred EEecCCCccccCCCeeEEEEeecCcEEEEEEcCeeeecC
Q 009890 485 TNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGEE 523 (523)
Q Consensus 485 v~i~~~~~~~~~~~~~~L~v~s~gh~lh~FVNg~~~G~~ 523 (523)
|+++.++..++++.+|+|+|.|.+|++||||||+++|++
T Consensus 478 i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~ 516 (840)
T PLN03059 478 VHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTV 516 (840)
T ss_pred EeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEE
Confidence 999988876788999999999999999999999999974
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-133 Score=1075.45 Aligned_cols=440 Identities=67% Similarity=1.184 Sum_probs=422.0
Q ss_pred CeeEEEecceEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHH
Q 009890 24 GANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKL 103 (523)
Q Consensus 24 ~~~vt~d~~~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~l 103 (523)
.+.|+||+++|+|||+|++++||+|||||++|+||+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccc
Q 009890 104 VAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (523)
Q Consensus 104 a~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENE 183 (523)
|+++||||+||+||||||||++||+|.||+.+|++.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHHhcCCCcceEEccCCCCCCccccCCCCccc-CCCC-CCCCCCCceEeeecccccccc
Q 009890 184 YGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYC-DQFT-PNSNNKPKMWTENWSGWFLSF 261 (523)
Q Consensus 184 yg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~~~ng~~~-~~~~-~~~~~~P~~~tE~~~Gwf~~w 261 (523)
||.+..++++.+++|++|.+.|+..++.+|||+||+|.|+|+++|++|||++| +.|. |++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99999889999999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeeeeeeeccCCCCCCCCCCCcccccccCCCCCCcCCCCCChhHHHHHHHHHHHHH
Q 009890 262 GGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKL 341 (523)
Q Consensus 262 G~~~~~r~~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~TSYDy~Api~E~G~~~~pKy~~lk~lh~~i~~ 341 (523)
|++.+.|++||+++.+++|+++|+|++|||||||||||||||| ++++|||||||||| |..|+|||+|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hhhcccCCCCCCCCCCCCceEEEEEcCCCceEEEEEeCCCCeeEEEEECCeEEEecCeeEEEcCCCCeEEeecceecCcc
Q 009890 342 CEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKINSVT 421 (523)
Q Consensus 342 ~~~~L~~~~~~~~~lg~~~~~~v~~~~~~~~~~Fl~N~~~~~~~~V~f~~~~~~lp~~svsIlp~~~~v~~~Ta~v~~q~ 421 (523)
|+|.+..++++..++|+.+++ |++||.|++...+..|.|++.+|.+|+|||||||||++++||||++.+|
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~---------C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREA---------CAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccchhhH---------HHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 999999999998898887765 9999999999999999999999999999999999999999999988543
Q ss_pred cceeeeeccccccccCCCCCCcceeEeeccCCCC-CCCccccchhhhhhhccCCCceeeEEEeEEEecCCCccccCCCee
Q 009890 422 LVPSFSRQSLQVAADSSDAIGSGWSYINEPVGIS-KDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKT 500 (523)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~E~~~~~-~~~~~~~~~llEq~~~T~D~sDYLWY~T~v~i~~~~~~~~~~~~~ 500 (523)
|+.+.||++.. ...++. .+|||+|+|+|+|| +|+++|+
T Consensus 402 -----------------------~~~~~e~~~~~~~~~~~~--~ll~~~~~t~d~sd----~t~~~i~------------ 440 (649)
T KOG0496|consen 402 -----------------------WISFTEPIPSEAVGQSFG--GLLEQTNLTKDKSD----TTSLKIP------------ 440 (649)
T ss_pred -----------------------cccccCCCccccccCcce--EEEEEEeeccccCC----CceEeec------------
Confidence 77788998864 334555 89999999999999 8887765
Q ss_pred EEEEeecCcEEEEEEcCeeeecC
Q 009890 501 VLHVQSLGHALHAFINGKLVGEE 523 (523)
Q Consensus 501 ~L~v~s~gh~lh~FVNg~~~G~~ 523 (523)
| |.||++||||||+|+|+.
T Consensus 441 -l---s~g~~~hVfvNg~~~G~~ 459 (649)
T KOG0496|consen 441 -L---SLGHALHVFVNGEFAGSL 459 (649)
T ss_pred -c---cccceEEEEECCEEeeeE
Confidence 2 899999999999999973
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=5.7e-92 Score=725.01 Aligned_cols=297 Identities=41% Similarity=0.782 Sum_probs=233.0
Q ss_pred eEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 33 AVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 33 ~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
+|+|||||++|+|||+||+|+||++|+|+|+||||+|+|||+|||+||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccC
Q 009890 113 LRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG 192 (523)
Q Consensus 113 lr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g 192 (523)
|||||||||||++||+|.||.+++++++||+|++|++++++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999998999999999999999999999999999 7899999999999999999943
Q ss_pred cccHHHHHHHHHHHHhcCCC-cceEEccCC--------CCCCccccCCCCcccCCC--------CCCCCCCCceEeeecc
Q 009890 193 AAGKSYIKWAAGMALSLDTG-VPWVMCQQS--------DAPDPIINTCNGFYCDQF--------TPNSNNKPKMWTENWS 255 (523)
Q Consensus 193 ~~~~~y~~~l~~~~~~~g~~-vP~~~~~~~--------~~p~~vi~~~ng~~~~~~--------~~~~~~~P~~~tE~~~ 255 (523)
.++++||+.|++++++.+++ ++.++|+.. ++|+..+.+|+++.|... ...+|++|.|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 666666542 244444566667777431 2456889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHhcCCeeeeeeeeccCCCCCCCCCCCcc----cccccCCCCCCcCCCCCChhHHH
Q 009890 256 GWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFI----STSYDYDAPLDEYGLIRQPKWGH 331 (523)
Q Consensus 256 Gwf~~wG~~~~~r~~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~----~TSYDy~Api~E~G~~~~pKy~~ 331 (523)
|||++||++.+.+++++++..+++++++| +++||||+|||||||+++|+... +|||||+|||+|+|+++ |||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g-~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~~-~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKG-NSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQLT-PKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHC-SEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhh-cccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCcC-HHHHH
Confidence 99999999999999999999999999999 55899999999999999876554 49999999999999995 99999
Q ss_pred HHHHHHH
Q 009890 332 LKDLHKA 338 (523)
Q Consensus 332 lk~lh~~ 338 (523)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999975
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=326.25 Aligned_cols=294 Identities=22% Similarity=0.316 Sum_probs=204.8
Q ss_pred EEEecceEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEE-ccccCcCCCCCceeeccCcchHHHHHHHHH
Q 009890 27 VTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYNFEGRYDLVKFVKLVA 105 (523)
Q Consensus 27 vt~d~~~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~t-YvfWn~HEp~~G~ydF~G~~dL~~fl~la~ 105 (523)
|++++..+++||+|++++||++||+|+|++.|.++|+|||++|+|+|++ |+.||.|||++|+|||+ .+|++ |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678999999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCCEEEEecCc-eeccccCCCCCCccccCCCCeee---------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 009890 106 EAGLYAHLRIGP-YVCAEWNFGGFPLWLHFIPGIQF---------RTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPI 175 (523)
Q Consensus 106 ~~GL~Vilr~GP-yi~aEw~~GG~P~WL~~~p~i~~---------Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpI 175 (523)
+.||+||||||| ..|.+|..+++|.||...+.-.. -.+++-|++++++.+++|.+++ +++||+|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 99999999999999986554222 2446678888777555554443 4789999
Q ss_pred EeccccccccccccccCcccHHHHHHHHHHHHh-cCCCcceEEccCC-CCCC-ccccCCCC-----ccc--CCCCCCCCC
Q 009890 176 ILSQIENEYGNIDSAYGAAGKSYIKWAAGMALS-LDTGVPWVMCQQS-DAPD-PIINTCNG-----FYC--DQFTPNSNN 245 (523)
Q Consensus 176 I~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~-~g~~vP~~~~~~~-~~p~-~vi~~~ng-----~~~--~~~~~~~~~ 245 (523)
|+||++||||++.+.++.|...+..||++.+-. ...+-+|=+.--+ +..+ ..|.+.+. ..- -++......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 999999999996666677889999999988732 1223343221100 0000 00111110 000 000000000
Q ss_pred C----CceEeeeccccc-cccCCCCCCCC-HHHHHHHHHHHHhcCCeeeeeeeeccCCCCC------CCCCCC---c---
Q 009890 246 K----PKMWTENWSGWF-LSFGGAVPYRP-VEDLAFAVARFFQRGGTFQNYYMYHGGTNFD------RTSGGP---F--- 307 (523)
Q Consensus 246 ~----P~~~tE~~~Gwf-~~wG~~~~~r~-~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG------~~~G~~---~--- 307 (523)
+ +....|.+-+|| ..|..+.-... .+.-++.++..+..... -||||+|+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 1 222333344444 22222211111 12223444555555544 7999999999999 443432 2
Q ss_pred ----ccccccCCCCCCcCCCCCChhH
Q 009890 308 ----ISTSYDYDAPLDEYGLIRQPKW 329 (523)
Q Consensus 308 ----~~TSYDy~Api~E~G~~~~pKy 329 (523)
..++|++.+.+.+.|.+|-|++
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~l~s~ 337 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALRLPSL 337 (673)
T ss_pred cCCcchhhhhhccCCCCCcccccccc
Confidence 5799999999999999654544
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.81 E-value=2.9e-20 Score=195.67 Aligned_cols=265 Identities=19% Similarity=0.271 Sum_probs=162.1
Q ss_pred eeCCCCCccchHHHHHHHHhCCCCEEEE-ccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCC
Q 009890 48 IHYPRSTPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG 126 (523)
Q Consensus 48 iHy~R~~~~~W~d~l~k~Ka~GlN~V~t-YvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G 126 (523)
.++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 3456789999999999999999999996 67799999999999999 899999999999999999985 56
Q ss_pred CCCccccC-CCCee----------------eecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccccccccc
Q 009890 127 GFPLWLHF-IPGIQ----------------FRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS 189 (523)
Q Consensus 127 G~P~WL~~-~p~i~----------------~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~ 189 (523)
..|.||.+ .|++. +..++|.|+++++++++++++++++++ .||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCcC
Confidence 78999965 56542 124578999999999999999988554 7999999999987533
Q ss_pred ccCcccHHHHHHHHHHHHhc-------C-------------CCcceEEccCC----------------------------
Q 009890 190 AYGAAGKSYIKWAAGMALSL-------D-------------TGVPWVMCQQS---------------------------- 221 (523)
Q Consensus 190 ~~g~~~~~y~~~l~~~~~~~-------g-------------~~vP~~~~~~~---------------------------- 221 (523)
....+.++|.+||++++... | +..|.-+....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457789999999998641 1 11232222000
Q ss_pred -CCCCccccC------CCCc-------ccCC------------CC---------------CCCCCCCceEeeeccccccc
Q 009890 222 -DAPDPIINT------CNGF-------YCDQ------------FT---------------PNSNNKPKMWTENWSGWFLS 260 (523)
Q Consensus 222 -~~p~~vi~~------~ng~-------~~~~------------~~---------------~~~~~~P~~~tE~~~Gwf~~ 260 (523)
..|+..|-+ ..+. .+|- .. ....++|.+.+|..+| -..
T Consensus 224 ~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~ 302 (374)
T PF02449_consen 224 EYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVN 302 (374)
T ss_dssp HHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---S
T ss_pred HhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCC
Confidence 011100000 0010 0110 00 1136799999999988 556
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCeeeeeeeeccCCCCCCCCCCCcccccccCCCCCCcCCCCCChhHHHHHHHHHHHH
Q 009890 261 FGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIK 340 (523)
Q Consensus 261 wG~~~~~r~~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~TSYDy~Api~E~G~~~~pKy~~lk~lh~~i~ 340 (523)
|+.......+..+....-.-++.|+..+.|+-+ ..--+|.-.. -.+-|+-+|...+++|.+++++.+-|+
T Consensus 303 ~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 303 WRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREPTRRYREVAQLGRELK 372 (374)
T ss_dssp SSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B-HHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCCCcHHHHHHHHHHHHh
Confidence 766555555667766666778999998888776 2223332110 135677888444789999999998887
Q ss_pred H
Q 009890 341 L 341 (523)
Q Consensus 341 ~ 341 (523)
.
T Consensus 373 ~ 373 (374)
T PF02449_consen 373 K 373 (374)
T ss_dssp T
T ss_pred c
Confidence 4
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.47 E-value=2e-12 Score=132.16 Aligned_cols=191 Identities=21% Similarity=0.293 Sum_probs=128.0
Q ss_pred EEEecceEEECCEEEEEEEEEeeCCC------CCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHH
Q 009890 27 VTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKF 100 (523)
Q Consensus 27 vt~d~~~l~idGk~~~l~sG~iHy~R------~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~f 100 (523)
|.+.++.|.|||||++|.+...|... .+++.|..+|++||++|+|+||+ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 67889999999999999999999633 47899999999999999999999 677755 899
Q ss_pred HHHHHHcCCEEEEecCce-eccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecc
Q 009890 101 VKLVAEAGLYAHLRIGPY-VCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (523)
Q Consensus 101 l~la~~~GL~Vilr~GPy-i~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~Q 179 (523)
+++|.+.||.|+..+ |. -++.|..-|. ......||.+.+.+.+-+++++++.+.|| .||+|-
T Consensus 65 ~~~cD~~GilV~~e~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~ 127 (298)
T PF02836_consen 65 YDLCDELGILVWQEI-PLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWS 127 (298)
T ss_dssp HHHHHHHT-EEEEE--S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEE
T ss_pred HHHHhhcCCEEEEec-cccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheee
Confidence 999999999999876 22 1222221110 12456789999988888888888888665 899999
Q ss_pred ccccccccccccCcccHHHHHHHHHHHHhcCCCcceEEccCC--CCCCccc-cCCCCcccC-----CCC----C--CCCC
Q 009890 180 IENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQS--DAPDPII-NTCNGFYCD-----QFT----P--NSNN 245 (523)
Q Consensus 180 IENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~--~~p~~vi-~~~ng~~~~-----~~~----~--~~~~ 245 (523)
+-||- ....+++.|.+++++.+..-|+...... ...+.++ +...+.|-. .+. . ..++
T Consensus 128 ~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 198 (298)
T PF02836_consen 128 LGNES---------DYREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPD 198 (298)
T ss_dssp EEESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCT
T ss_pred cCccC---------ccccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCC
Confidence 99998 2457888999999999988887655441 1111111 111111110 111 1 3578
Q ss_pred CCceEeeecccccc
Q 009890 246 KPKMWTENWSGWFL 259 (523)
Q Consensus 246 ~P~~~tE~~~Gwf~ 259 (523)
+|.+.+|+....+.
T Consensus 199 kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 199 KPIIISEYGADAYN 212 (298)
T ss_dssp S-EEEEEESEBBSS
T ss_pred CCeEehhccccccc
Confidence 99999999765443
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.22 E-value=2.7e-10 Score=127.46 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=115.8
Q ss_pred eeEEEecceEEECCEEEEEEEEEeeCCC------CCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHH
Q 009890 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (523)
Q Consensus 25 ~~vt~d~~~l~idGk~~~l~sG~iHy~R------~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~ 98 (523)
.+|++++..|+|||+|+++.+.+.|... .+++.|..+|+.||++|+|+||+ .|-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------H
Confidence 4688999999999999999999998532 46788999999999999999999 566654 7
Q ss_pred HHHHHHHHcCCEEEEecCceeccccCCCCCCcccc--------CCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 009890 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH--------FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYAS 170 (523)
Q Consensus 99 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~--------~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~ 170 (523)
+|+++|.+.||+|+..+. . -|+..|.. ..+.......+|.+.+..++-+++++++.+
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999998762 1 11222211 111111123456666666666666666555
Q ss_pred cCCceEeccccccccccccccCcccHHHHHHHHHHHHhcCCCcceEEcc
Q 009890 171 QGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (523)
Q Consensus 171 ~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (523)
|...||+|-|-||.... ......+++.|.+.+++++..-|+..+.
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 44599999999997531 1234578888999999999888877654
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.10 E-value=1.7e-09 Score=127.57 Aligned_cols=260 Identities=17% Similarity=0.155 Sum_probs=153.4
Q ss_pred eeEEEecceEEECCEEEEEEEEEeeCCC------CCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHH
Q 009890 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (523)
Q Consensus 25 ~~vt~d~~~l~idGk~~~l~sG~iHy~R------~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~ 98 (523)
.+|+++++.|+|||+|+++.+...|... .+++.|+.+|+.||++|+|+||+ .|-|.. .
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~~-----------~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPND-----------P 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------H
Confidence 4578889999999999999999988422 37889999999999999999999 466654 7
Q ss_pred HHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEec
Q 009890 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (523)
Q Consensus 99 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~ 178 (523)
+|+++|.+.||+|+-.. |..|.-|.. . .+...-+++|.+.++..+-+++++.+.+ +...||+|
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~-------~--~~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFAN-------V--GDISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccc-------c--cccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 89999999999999876 333222211 0 0111224667776544433444544444 55699999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHhcCCCcceEEccCCCCC--CccccCCCCcc--cCCCCCCCCCCCceEeeec
Q 009890 179 QIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAP--DPIINTCNGFY--CDQFTPNSNNKPKMWTENW 254 (523)
Q Consensus 179 QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p--~~vi~~~ng~~--~~~~~~~~~~~P~~~tE~~ 254 (523)
-+.||-+. | . .++.+.+.+++++-.-|+. +.+.... ..|+....+.+ +..+....+.+|.+.+|+-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999753 2 2 2467788888888777754 3332111 11221111111 1122233457999999984
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHH--Hh--------------cCCeeeeeeeeccCCCCCCCCCCCcccccccCCCCC
Q 009890 255 SGWFLSFGGAVPYRPVEDLAFAVARF--FQ--------------RGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPL 318 (523)
Q Consensus 255 ~Gwf~~wG~~~~~r~~~d~~~~~~~~--~~--------------~g~s~~nyYM~hGGTNfG~~~G~~~~~TSYDy~Api 318 (523)
.+ .|. .+ ...++.-..+.+. ++ .+... .-|+.+||- ||-+.. -.++--+.-+
T Consensus 515 ha----mgn-~~-g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G-~~~~~ygGd-~g~~p~----~~~f~~~Glv 582 (1021)
T PRK10340 515 HA----MGN-GP-GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNG-NVWYKYGGD-YGDYPN----NYNFCIDGLI 582 (1021)
T ss_pred hc----cCC-CC-CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCC-CEEEEECCC-CCCCCC----CcCcccceeE
Confidence 21 121 00 0112222111110 00 00000 124445553 553311 1222234667
Q ss_pred CcCCCCCChhHHHHHHHHHHHH
Q 009890 319 DEYGLIRQPKWGHLKDLHKAIK 340 (523)
Q Consensus 319 ~E~G~~~~pKy~~lk~lh~~i~ 340 (523)
+.+|.+ .|.+..+|.+.+-++
T Consensus 583 ~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 583 YPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred CCCCCC-ChhHHHHHHhcceEE
Confidence 888887 599999998887776
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.09 E-value=2.6e-09 Score=125.94 Aligned_cols=150 Identities=19% Similarity=0.181 Sum_probs=109.0
Q ss_pred eeEEEecceEEECCEEEEEEEEEeeCC------CCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHH
Q 009890 25 ANVTYDHRAVVIGGKRRVLISGSIHYP------RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (523)
Q Consensus 25 ~~vt~d~~~l~idGk~~~l~sG~iHy~------R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~ 98 (523)
.+|++++..|+|||+|+++.+...|.. +.+++.++.+|+.||++|+|+||+ .|-|.. .
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~-----------p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPNH-----------P 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------H
Confidence 457888889999999999999999842 358899999999999999999999 466544 7
Q ss_pred HHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEec
Q 009890 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (523)
Q Consensus 99 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~ 178 (523)
+|+++|.+.||+|+-... . | ..|-.|.. .-.+||.|++++.+=+++++.+.+ +...||+|
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~--------~~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN--------RLSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc--------CCCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 899999999999998762 2 1 11111210 013577777665554555555555 45699999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHhcCCCcceEEcc
Q 009890 179 QIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (523)
Q Consensus 179 QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (523)
-+.||-+. + .....+.+.+++++-.-|+....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEECC
Confidence 99999753 2 22456777788888888876653
No 10
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.04 E-value=3.1e-09 Score=105.67 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=112.4
Q ss_pred CCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCC-CCCce-eeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 37 GGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-PVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 37 dGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HE-p~~G~-ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
+|+++.+.+-+.|... +..-++.+++||+.|+|+||+.+.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999321 22778999999999999999999995555 67664 66666678999999999999999987
Q ss_pred cCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccc--cC
Q 009890 115 IGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSA--YG 192 (523)
Q Consensus 115 ~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~--~g 192 (523)
+= + .|.|...... -...+...+...++++.|++++|+ ..+|++++|=||....... +.
T Consensus 82 ~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 62 1 2667433211 112333445555667777777763 3479999999999864321 10
Q ss_pred ----cccHHHHHHHHHHHHhcCCCcceEEcc
Q 009890 193 ----AAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (523)
Q Consensus 193 ----~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (523)
..-.++++.+.+..|+.+.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 112456677777788888887766544
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=9.4e-09 Score=117.89 Aligned_cols=120 Identities=20% Similarity=0.273 Sum_probs=99.1
Q ss_pred eeEEEecceEEECCEEEEEEEEEeeCCC-----C-CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHH
Q 009890 25 ANVTYDHRAVVIGGKRRVLISGSIHYPR-----S-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLV 98 (523)
Q Consensus 25 ~~vt~d~~~l~idGk~~~l~sG~iHy~R-----~-~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~ 98 (523)
.+|++++..|.|||||+++-+..-|.+- . ..+.-.++|++||++|+|+|||. |-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------H
Confidence 5689999999999999999999999633 3 34448899999999999999994 88776 8
Q ss_pred HHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEec
Q 009890 99 KFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILS 178 (523)
Q Consensus 99 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~ 178 (523)
.|+++|.+.||+|+-.+ + .||.. .| +++.|++.+..=+++++++.|.|| .||+|
T Consensus 348 ~~ydLcDelGllV~~Ea-~---~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA-M---IETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec-c---hhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 99999999999999886 2 22221 11 788899998888888888888665 89999
Q ss_pred cccccccc
Q 009890 179 QIENEYGN 186 (523)
Q Consensus 179 QIENEyg~ 186 (523)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999874
No 12
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.37 E-value=1.1e-06 Score=88.45 Aligned_cols=117 Identities=25% Similarity=0.392 Sum_probs=89.5
Q ss_pred cCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHH
Q 009890 79 WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKI 158 (523)
Q Consensus 79 Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i 158 (523)
|...||+||+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 333222 433 6899987533 345677788888888
Q ss_pred HHHHHhcccccccCCceEecccccccccccc------cc-CcccHHHHHHHHHHHHhcCCCcceEEccC
Q 009890 159 VDMMKQEKLYASQGGPIILSQIENEYGNIDS------AY-GAAGKSYIKWAAGMALSLDTGVPWVMCQQ 220 (523)
Q Consensus 159 ~~~ik~~~l~~~~gGpII~~QIENEyg~~~~------~~-g~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 220 (523)
+.+++ |.|..|+|=||.-+... .+ ...|.+|+...-+.|++.+.++.++.++-
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 87776 46889999999644210 11 22456899999999999999999998863
No 13
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.32 E-value=6.7e-06 Score=84.78 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=90.3
Q ss_pred CCeeEEEecceEE--ECCEEEEEEEEEeeCCC-----------CCccchHHHHHHHHhCCCCEEEEccccCcCCCCCcee
Q 009890 23 FGANVTYDHRAVV--IGGKRRVLISGSIHYPR-----------STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY 89 (523)
Q Consensus 23 ~~~~vt~d~~~l~--idGk~~~l~sG~iHy~R-----------~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~y 89 (523)
.-..|+..++.|. .+|++|++.+-..-+.. ..++.|..++..||++|+|+||+|- ..|.
T Consensus 7 ~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~---- 78 (314)
T PF03198_consen 7 AVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPS---- 78 (314)
T ss_dssp TS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT----
T ss_pred cCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC----
Confidence 4467999999999 79999999876665422 2567899999999999999999984 2332
Q ss_pred eccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCCh--hHHHHHHHHHHHHHHHHHhccc
Q 009890 90 NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNE--PFKAEMQRFTAKIVDMMKQEKL 167 (523)
Q Consensus 90 dF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~--~fl~~~~~~~~~i~~~ik~~~l 167 (523)
.|-+.++++.+++|+|||+-.+. | +..+..++| .|-...-.-+.++++.+++++
T Consensus 79 -----~nHd~CM~~~~~aGIYvi~Dl~~-----------p-------~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~- 134 (314)
T PF03198_consen 79 -----KNHDECMSAFADAGIYVILDLNT-----------P-------NGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD- 134 (314)
T ss_dssp -----S--HHHHHHHHHTT-EEEEES-B-----------T-------TBS--TTS------HHHHHHHHHHHHHHTT-T-
T ss_pred -----CCHHHHHHHHHhCCCEEEEecCC-----------C-------CccccCCCCcCCCCHHHHHHHHHHHHHhccCC-
Confidence 37899999999999999998852 2 222333445 444443344556677788554
Q ss_pred ccccCCceEecccccccccccc--ccCcccHHHHHHHHHHHHhcCC-CcceE
Q 009890 168 YASQGGPIILSQIENEYGNIDS--AYGAAGKSYIKWAAGMALSLDT-GVPWV 216 (523)
Q Consensus 168 ~~~~gGpII~~QIENEyg~~~~--~~g~~~~~y~~~l~~~~~~~g~-~vP~~ 216 (523)
+++++=+.||--+-.. .-.+.-|+.++.+|+-.++.+. .+|+=
T Consensus 135 ------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVG 180 (314)
T PF03198_consen 135 ------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVG 180 (314)
T ss_dssp ------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EE
T ss_pred ------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 8999999999864321 1112345556666666666666 45653
No 14
>TIGR03356 BGL beta-galactosidase.
Probab=98.00 E-value=1.4e-05 Score=86.48 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=81.1
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC-CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
..|+++|+.||++|+|++|+-|.|...+|. +|++|.+|-...+++|+.|.++||.+|+-. -.-.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL--------~Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL--------YHWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee--------ccCCccHHHHh
Confidence 568999999999999999999999999999 799999888899999999999999988766 23468999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 135 ~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
..|. .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 6553 3466667777777777777763
No 15
>PLN02705 beta-amylase
Probab=97.89 E-value=3.2e-05 Score=85.19 Aligned_cols=115 Identities=20% Similarity=0.292 Sum_probs=80.5
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCC-CCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCC-----CC
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GF 128 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~ 128 (523)
++.-...|+++|++|++.|.+-|.|...|. .|++|||+| -.+++++|+++||++.+-.-=--|+- +-| -|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IPL 342 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMISL 342 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCcccccC
Confidence 344678899999999999999999999998 699999996 56779999999999654432233443 223 38
Q ss_pred CccccC----CCCeeee------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccc
Q 009890 129 PLWLHF----IPGIQFR------------------------TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI 180 (523)
Q Consensus 129 P~WL~~----~p~i~~R------------------------t~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QI 180 (523)
|.|+.+ .|+|.+. |--+.|.+.|+.|-..+.+.|. +|-|.-+||
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~V 414 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFV--------EGLITAVEI 414 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhcc--------CCceeEEEe
Confidence 999975 5676331 1113455656555555544432 467888887
Q ss_pred c
Q 009890 181 E 181 (523)
Q Consensus 181 E 181 (523)
.
T Consensus 415 G 415 (681)
T PLN02705 415 G 415 (681)
T ss_pred c
Confidence 3
No 16
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=97.89 E-value=1.6e-05 Score=70.59 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=41.8
Q ss_pred chhhhhhhccCCCceeeEEEeEEEecCCCccccCCCeeE-EEEe-ecCcEEEEEEcCeeeec
Q 009890 463 PGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV-LHVQ-SLGHALHAFINGKLVGE 522 (523)
Q Consensus 463 ~~llEq~~~T~D~sDYLWY~T~v~i~~~~~~~~~~~~~~-L~v~-s~gh~lh~FVNg~~~G~ 522 (523)
..+++..+.+++.++|+||+|+|+.+..+. .-. |.+. +.+|.++|||||+++|+
T Consensus 21 ~~~~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~ 76 (111)
T PF13364_consen 21 TGPVLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGS 76 (111)
T ss_dssp SSSSTCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEE
T ss_pred CCceeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeee
Confidence 345788899999999999999997443331 123 4454 77999999999999996
No 17
>PLN02905 beta-amylase
Probab=97.88 E-value=4.1e-05 Score=84.58 Aligned_cols=114 Identities=21% Similarity=0.407 Sum_probs=81.1
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCC-CCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCC-----CCC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GFP 129 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~P 129 (523)
+.-...|+++|++|++.|.+-|.|...|. .|++|||+| -.+++++|+++||++.+-.-=--|+- +-| -||
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPLP 361 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPLP 361 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCC
Confidence 34567899999999999999999999998 699999996 56779999999999754432233433 222 389
Q ss_pred ccccC----CCCeeee------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 009890 130 LWLHF----IPGIQFR------------------------TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIE 181 (523)
Q Consensus 130 ~WL~~----~p~i~~R------------------------t~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIE 181 (523)
.|+.+ .|+|.+. |--+.|.+.|+.|-..+.+.|. +|-|.-+||.
T Consensus 362 ~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~VG 433 (702)
T PLN02905 362 HWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVEVG 433 (702)
T ss_pred HHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEEec
Confidence 99975 5776331 1123466666666666555443 4678888873
No 18
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.83 E-value=0.0003 Score=72.45 Aligned_cols=224 Identities=21% Similarity=0.278 Sum_probs=111.7
Q ss_pred cceEE-ECCEEEEEEEEEeeC---CCCCccchHHHHHHHHhCCCCEEEEccc--cCcC--------CCC----Cceeecc
Q 009890 31 HRAVV-IGGKRRVLISGSIHY---PRSTPEMWPDLIQKSKDGGLDVIETYVF--WNLH--------EPV----RNQYNFE 92 (523)
Q Consensus 31 ~~~l~-idGk~~~l~sG~iHy---~R~~~~~W~d~l~k~Ka~GlN~V~tYvf--Wn~H--------Ep~----~G~ydF~ 92 (523)
++.|. -||+||+.++ .-.+ .|...++|+.-|+..|+.|||+|++=++ |..+ .|- ++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 46676 7999999998 4443 3568899999999999999999999776 4422 121 2237776
Q ss_pred Cc-----chHHHHHHHHHHcCCEEEEec---CceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 93 GR-----YDLVKFVKLVAEAGLYAHLRI---GPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 93 G~-----~dL~~fl~la~~~GL~Vilr~---GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
.- ..|++.|+.+.+.||.+.|-| +||+-+-|-.| | ..+ =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 469999999999999986543 23333334332 1 111 136788999999999996
Q ss_pred cccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHhcCCCcceEEcc--CC-CCCC-----cccc---CCCC
Q 009890 165 EKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ--QS-DAPD-----PIIN---TCNG 233 (523)
Q Consensus 165 ~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~--~~-~~p~-----~vi~---~~ng 233 (523)
.+ +|| |=|-||+ . ......++.+.+++..++.+-.- +++.- +. ..++ +=++ ...|
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~-L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsg 210 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQ-LITIHPCGRTSSPDWFHDEPWLDFNMYQSG 210 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS--EEEEE-BTEBTHHHHTT-TT--SEEEB--
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCcchhhcCCCcceEEEeecC
Confidence 53 466 7799999 1 12356677777777777765433 33222 11 1111 1011 1112
Q ss_pred cccC----------CCC-CCCCCCCceEeee-ccccccccCCCCCCCCHHHHHHHHHHHHhcCC
Q 009890 234 FYCD----------QFT-PNSNNKPKMWTEN-WSGWFLSFGGAVPYRPVEDLAFAVARFFQRGG 285 (523)
Q Consensus 234 ~~~~----------~~~-~~~~~~P~~~tE~-~~Gwf~~wG~~~~~r~~~d~~~~~~~~~~~g~ 285 (523)
-... ... ...|.||.+..|- +.|--..+.+.....+++|+-...=.-+-+|+
T Consensus 211 h~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 211 HNRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp S--TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CCcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 2110 111 4578999999996 34433322223344577887665444455565
No 19
>PLN02801 beta-amylase
Probab=97.81 E-value=5.2e-05 Score=82.34 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=62.9
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCC-CCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCC-----C
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 127 (523)
.++.-+..|+++|++|++.|.+.|-|...|. .|++|||+| -.+++++|+++||++.+-.-=--|+- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 3555788999999999999999999999998 599999996 56779999999999754332233433 222 3
Q ss_pred CCccccC----CCCe
Q 009890 128 FPLWLHF----IPGI 138 (523)
Q Consensus 128 ~P~WL~~----~p~i 138 (523)
+|.|+.+ +|+|
T Consensus 111 LP~WV~~~g~~~pDi 125 (517)
T PLN02801 111 IPQWVRDVGDSDPDI 125 (517)
T ss_pred CCHHHHHhhccCCCc
Confidence 8999974 5776
No 20
>PLN02161 beta-amylase
Probab=97.80 E-value=7.2e-05 Score=81.22 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCC-CCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCC-----CC
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GF 128 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~ 128 (523)
++.-...|+++|++|++.|.+-|-|...|. .|++|||+| -.+++++++++||++.+-.-=--|+- +-| -|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 334567899999999999999999999998 799999996 56779999999999754432233333 222 28
Q ss_pred CccccC----CCCeee
Q 009890 129 PLWLHF----IPGIQF 140 (523)
Q Consensus 129 P~WL~~----~p~i~~ 140 (523)
|.|+.+ .|+|.+
T Consensus 192 P~WV~~~g~~~pDi~f 207 (531)
T PLN02161 192 PLWIREIGDVNKDIYY 207 (531)
T ss_pred CHHHHhhhccCCCceE
Confidence 999975 577643
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.75 E-value=7.5e-05 Score=81.73 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=63.7
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCC-CCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCC-----C
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----G 127 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 127 (523)
.++.-...|+++|++|++.|.+-|.|...|. .|++|||+| -.+++++|+++||++.+-.-=--|+- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 3455788999999999999999999999998 799999996 56779999999999754432233433 222 3
Q ss_pred CCccccC----CCCee
Q 009890 128 FPLWLHF----IPGIQ 139 (523)
Q Consensus 128 ~P~WL~~----~p~i~ 139 (523)
||.|+.+ +|+|.
T Consensus 201 LP~WV~~~g~~dpDif 216 (573)
T PLN00197 201 LPKWVVEEVDKDPDLA 216 (573)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999975 56763
No 22
>PLN02803 beta-amylase
Probab=97.74 E-value=8.5e-05 Score=81.07 Aligned_cols=81 Identities=22% Similarity=0.476 Sum_probs=62.4
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCC-CCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCC-----CCC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG-----GFP 129 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~P 129 (523)
+.-...|+++|++|++.|.+-|-|...|. .|++|||+| -.+++++|+++||++.+-.-=--|+- |-| -||
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCC
Confidence 44577899999999999999999999999 599999996 56779999999999754432233433 222 389
Q ss_pred ccccC----CCCeee
Q 009890 130 LWLHF----IPGIQF 140 (523)
Q Consensus 130 ~WL~~----~p~i~~ 140 (523)
.|+.+ +|+|.+
T Consensus 183 ~WV~e~~~~~pDi~f 197 (548)
T PLN02803 183 PWVLEEMSKNPDLVY 197 (548)
T ss_pred HHHHHhhhcCCCceE
Confidence 99875 577643
No 23
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.43 E-value=0.00043 Score=72.70 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=81.0
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCC-ceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCC
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVR-NQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPG 137 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~-G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~ 137 (523)
.|.|+-+|+.|+|.||.=| .++|.. |..|.+ +..+..+-|+++||.|+|-+- |- .-|.--|- ...|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv---wv~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV---WVNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe---ccCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCC----CCCCc
Confidence 6899999999999999988 556766 655555 666667777899999999873 11 11111110 00121
Q ss_pred eeeec-CChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccccccc-ccccCc--cc---HHHHHHHHHHHHhcC
Q 009890 138 IQFRT-DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNI-DSAYGA--AG---KSYIKWAAGMALSLD 210 (523)
Q Consensus 138 i~~Rt-~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~-~~~~g~--~~---~~y~~~l~~~~~~~g 210 (523)
- -+. +-..-.+++..|++.+++.|++. |=.+=||||.||...- -+..|. .- .++++.-.+..|+.+
T Consensus 95 a-W~~~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 95 A-WANLSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp T-CTSSSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred c-CCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 1 111 33567789999999999999965 4467799999998642 122221 11 233444456666655
Q ss_pred CCcceE-Ecc
Q 009890 211 TGVPWV-MCQ 219 (523)
Q Consensus 211 ~~vP~~-~~~ 219 (523)
..+.++ ++.
T Consensus 168 p~~kV~lH~~ 177 (332)
T PF07745_consen 168 PNIKVMLHLA 177 (332)
T ss_dssp STSEEEEEES
T ss_pred CCCcEEEEEC
Confidence 554433 444
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.36 E-value=0.00015 Score=77.31 Aligned_cols=74 Identities=22% Similarity=0.394 Sum_probs=51.9
Q ss_pred hHHHHHHHHhCCCCEEEEccccCcCCCC-CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccc----cCCCCCCccc
Q 009890 58 WPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE----WNFGGFPLWL 132 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aE----w~~GG~P~WL 132 (523)
-+..|+++|++|++.|.+.|-|...|.. |++|||+| -+++.++|++.||++.+-.-=--|+- .-+=-||.|+
T Consensus 18 ~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~Wv 94 (402)
T PF01373_consen 18 LEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSWV 94 (402)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HHH
T ss_pred HHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHHH
Confidence 4678999999999999999999999997 99999995 67889999999999765432222321 1111379999
Q ss_pred cC
Q 009890 133 HF 134 (523)
Q Consensus 133 ~~ 134 (523)
.+
T Consensus 95 ~~ 96 (402)
T PF01373_consen 95 WE 96 (402)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 25
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.32 E-value=0.00035 Score=72.91 Aligned_cols=157 Identities=19% Similarity=0.285 Sum_probs=109.4
Q ss_pred EEEEEeeCCCCCcc-chHHHHHHHHhCCCCEEEEc--cccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCcee
Q 009890 43 LISGSIHYPRSTPE-MWPDLIQKSKDGGLDVIETY--VFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (523)
Q Consensus 43 l~sG~iHy~R~~~~-~W~d~l~k~Ka~GlN~V~tY--vfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi 119 (523)
.++..++..+...+ ...+ +-..-+|.|..- .-|...||.+|+|||+ ..+++++.|+++||.|--.+ -+
T Consensus 11 ~~G~av~~~~~~~~~~~~~----~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRE----LFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV 81 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHH----HHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE
T ss_pred CEEEEechhHcCCcHHHHH----HHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE
Confidence 68888887766444 3444 334558888774 6799999999999999 89999999999999985332 11
Q ss_pred ccccCCCCCCccccCCCCeeeecC-ChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccccccccc---------
Q 009890 120 CAEWNFGGFPLWLHFIPGIQFRTD-NEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS--------- 189 (523)
Q Consensus 120 ~aEw~~GG~P~WL~~~p~i~~Rt~-d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~--------- 189 (523)
|.. ..|.|+...+.. ... -+..++.++++++.++.++++. |.|..|-|=||-=.-..
T Consensus 82 ---W~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~ 148 (320)
T PF00331_consen 82 ---WHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSP 148 (320)
T ss_dssp ---ESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSH
T ss_pred ---Ecc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCCh
Confidence 333 789999864110 000 1237888888888888887732 79999999999743221
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCcceEEccCC
Q 009890 190 AYGAAGKSYIKWAAGMALSLDTGVPWVMCQQS 221 (523)
Q Consensus 190 ~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~ 221 (523)
.+..-|.+|+..+-++|++...++.++.++-.
T Consensus 149 ~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 149 WYDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 12234678999999999999999999998854
No 26
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.19 E-value=0.00029 Score=76.80 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=75.3
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC--CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (523)
..|+++|+.||++|+|+.|.-+-|...+|. +|++|-+|-.--+++|+.+.++||..++-. ..-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999988766 4567999998
Q ss_pred CCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 134 ~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
+.-|- .|+...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74443 3466667777777777777774
No 27
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.03 E-value=0.0017 Score=71.48 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=76.9
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC--CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (523)
..|+++|+.||++|+|+-|+-+-|.-..|. +|+.|-+|-.-.+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 356999999999999999999999999997 567888888899999999999999988766 3457899997
Q ss_pred CC-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 134 ~~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
+. -|- .|+...++-.+|.+.+++.+++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 63 443 3455555566666666666653
No 28
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.94 E-value=0.0095 Score=65.91 Aligned_cols=333 Identities=18% Similarity=0.281 Sum_probs=164.2
Q ss_pred EEEEEEEEEeeC------CCCCccchHHHHHHH---HhCCCCEEEEccc--------cCcCCCCCceee---ccCcc-h-
Q 009890 39 KRRVLISGSIHY------PRSTPEMWPDLIQKS---KDGGLDVIETYVF--------WNLHEPVRNQYN---FEGRY-D- 96 (523)
Q Consensus 39 k~~~l~sG~iHy------~R~~~~~W~d~l~k~---Ka~GlN~V~tYvf--------Wn~HEp~~G~yd---F~G~~-d- 96 (523)
+++.=++|++=- .+.+++.=+.+|+.+ +-+|++.+|+.+- +.+-+ .|+.++ |+=.+ |
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 455567887731 223333222333332 4589999998773 22222 233222 22111 2
Q ss_pred --HHHHHHHHHHc--CCEEEEecCceeccccCCCCCCccccCCCCe----eeec-CChhHHHHHHHHHHHHHHHHHhccc
Q 009890 97 --LVKFVKLVAEA--GLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI----QFRT-DNEPFKAEMQRFTAKIVDMMKQEKL 167 (523)
Q Consensus 97 --L~~fl~la~~~--GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i----~~Rt-~d~~fl~~~~~~~~~i~~~ik~~~l 167 (523)
+..+|+.|++. +|+++.-| |. .|.|++....+ .++. .++.|.+....|+.+.++.++++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI 222 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGI 222 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT-
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCC
Confidence 34677777654 57777766 43 79999864322 2442 2456878888888888888886554
Q ss_pred ccccCCceEeccccccccccc--------cccC-cccHHHHH-HHHHHHHhcCC--CcceEEccC--CCCCC---ccccC
Q 009890 168 YASQGGPIILSQIENEYGNID--------SAYG-AAGKSYIK-WAAGMALSLDT--GVPWVMCQQ--SDAPD---PIINT 230 (523)
Q Consensus 168 ~~~~gGpII~~QIENEyg~~~--------~~~g-~~~~~y~~-~l~~~~~~~g~--~vP~~~~~~--~~~p~---~vi~~ 230 (523)
+|=++-+-||..... +.+. +..+.|++ .|....++.++ ++-+++++. .+.|+ .++..
T Consensus 223 ------~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 223 ------PIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp -------ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ------CeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 899999999987421 1121 23456775 48888888877 777766653 22332 22221
Q ss_pred ------CC--Cccc--C-CC-------CCCCCCCCceEeeeccccccccCCCCCC---CCHHHHHHHHHHHHhcCCeeee
Q 009890 231 ------CN--GFYC--D-QF-------TPNSNNKPKMWTENWSGWFLSFGGAVPY---RPVEDLAFAVARFFQRGGTFQN 289 (523)
Q Consensus 231 ------~n--g~~~--~-~~-------~~~~~~~P~~~tE~~~Gwf~~wG~~~~~---r~~~d~~~~~~~~~~~g~s~~n 289 (523)
.. +++| . .. ....|++..+.||...|.. .|+..... ..++..+..+..-+..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 11 2333 1 11 1246889999999875531 12211111 1233444444444555544 2
Q ss_pred eee------eccCCCCCCC-CCCCcccccccCCCCCCcCCCCCChhHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCceE
Q 009890 290 YYM------YHGGTNFDRT-SGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATDPTYPSLGPNLEA 362 (523)
Q Consensus 290 yYM------~hGGTNfG~~-~G~~~~~TSYDy~Api~E~G~~~~pKy~~lk~lh~~i~~~~~~L~~~~~~~~~lg~~~~~ 362 (523)
+-+ -.||-|++.- ..++.++.. +. +|+ .++|.|..|....+||+.-...+-.... .-+.+.++
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~st~~---~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRPGAVRIGSTSS---SSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-TT-EEEEEEES---SSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCCCCEEEEeecc---CCCCceeE
Confidence 211 2488887532 112222111 11 222 3579999999999998854433322111 11124677
Q ss_pred EEEEcCCCceEEEEEeCCCC-eeEEEEECC-------eEEEecCeeE
Q 009890 363 TVYKTGSGLCSAFLANIGTN-SDVTVKFNG-------NSYLLPAWSV 401 (523)
Q Consensus 363 ~v~~~~~~~~~~Fl~N~~~~-~~~~V~f~~-------~~~~lp~~sv 401 (523)
..|.+.+|.-++-|.|..+. ..++|++++ -.++|||.||
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 77887777777777775543 334566652 3689999875
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.84 E-value=0.014 Score=55.54 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCCCccchHHHHHHHHhCCCCEEEEccccCcCC-----CC---CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccc
Q 009890 51 PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-----PV---RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (523)
Q Consensus 51 ~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HE-----p~---~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aE 122 (523)
-.++++.|+.+++.||+.|+|+|=. -|...+ |. ++.|.-....-|+.+|++|++.||+|.+..+-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIl--q~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLIL--QWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEE--EEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 4689999999999999999999842 122111 11 22233333446999999999999999997741
Q ss_pred cCCCCCCccccCCCCeeeecCChhHH-HHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHHH
Q 009890 123 WNFGGFPLWLHFIPGIQFRTDNEPFK-AEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKW 201 (523)
Q Consensus 123 w~~GG~P~WL~~~p~i~~Rt~d~~fl-~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~ 201 (523)
-|.|-.. .|+... +.-++...+|..+..+ ....=+|=|=.|..... ....+..+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg~-------h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYGH-------HPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHcC-------CCCCceEEEecccCCcc----cchHHHHHH
Confidence 1233321 222221 1112233334443333 34677888888887653 234556666
Q ss_pred HHHHHHhcCCCcceE
Q 009890 202 AAGMALSLDTGVPWV 216 (523)
Q Consensus 202 l~~~~~~~g~~vP~~ 216 (523)
|.+.+++..-+-|+.
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 666666543355543
No 30
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.84 E-value=0.0027 Score=69.87 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=73.8
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC--CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (523)
..|+++++.||++|+|+.|+-+-|...+|. +++.|-+|-.-.+++|+.|.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 446999999999999999999999999997 566788888889999999999999987765 3457899997
Q ss_pred CC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 134 ~~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
.. -|- .|+...++..+|.+.+++.++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 443 234444555555555555554
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.0087 Score=62.23 Aligned_cols=133 Identities=22% Similarity=0.309 Sum_probs=101.9
Q ss_pred HHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCC
Q 009890 65 SKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDN 144 (523)
Q Consensus 65 ~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d 144 (523)
.|+.+.=|=+.=.=|+..||++|.|+|+ --++..+.|+++||.+.-.+ .| |.. -.|.|+.... -.-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGHt--Lv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGHT--LV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccce--ee---ecc-cCCchhhccc-----cCh
Confidence 6666666666667799999999999999 68999999999999764322 22 333 5788887522 134
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccccccccc-------ccCcccHHHHHHHHHHHHhcCCCcceEE
Q 009890 145 EPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS-------AYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (523)
Q Consensus 145 ~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~-------~~g~~~~~y~~~l~~~~~~~g~~vP~~~ 217 (523)
+...+.|++++..++.+.| |-|+.|-|=||-=.-+. ..+-.+.+|+++.-+.|++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6788999999999999988 35999999999743211 1224688999999999999998888888
Q ss_pred ccC
Q 009890 218 CQQ 220 (523)
Q Consensus 218 ~~~ 220 (523)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 875
No 32
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=96.76 E-value=0.92 Score=48.85 Aligned_cols=247 Identities=16% Similarity=0.215 Sum_probs=132.6
Q ss_pred CCCCccchHHHHHHHHhCCCCEEEE-------ccccCcCCCCCceeeccCcch-HHHHHHHHHHcCCEEEEecCceecc-
Q 009890 51 PRSTPEMWPDLIQKSKDGGLDVIET-------YVFWNLHEPVRNQYNFEGRYD-LVKFVKLVAEAGLYAHLRIGPYVCA- 121 (523)
Q Consensus 51 ~R~~~~~W~d~l~k~Ka~GlN~V~t-------YvfWn~HEp~~G~ydF~G~~d-L~~fl~la~~~GL~Vilr~GPyi~a- 121 (523)
.+..++.| .+.+|++|+.-|=. +-.|+..-..-..-+-.-.+| |..+.+.|+++||.+-+ |...
T Consensus 79 ~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S~~ 151 (384)
T smart00812 79 EKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHSLF 151 (384)
T ss_pred hhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcCHH
Confidence 34456656 56788888885542 223654432211112111456 66788999999997766 4443
Q ss_pred ccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHH-HHH
Q 009890 122 EWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKS-YIK 200 (523)
Q Consensus 122 Ew~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~-y~~ 200 (523)
+|.. |.|....+.-..+.+.+.|.++++.|..+|.+.|.++ ||-|+|- +-..+ ..... -.+
T Consensus 152 DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~-------~~~~~~~~~ 213 (384)
T smart00812 152 DWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWE-------APDDYWRSK 213 (384)
T ss_pred HhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCC-------CccchhcHH
Confidence 7764 5443211111133456788999988888888888743 2444442 11111 11111 144
Q ss_pred HHHHHHHhcCCCc-ceEEccCCCCCCccccCCCCcc--c-CCCCCCC-CCCCceEeeec-cccccccCC-CCCCCCHHHH
Q 009890 201 WAAGMALSLDTGV-PWVMCQQSDAPDPIINTCNGFY--C-DQFTPNS-NNKPKMWTENW-SGWFLSFGG-AVPYRPVEDL 273 (523)
Q Consensus 201 ~l~~~~~~~g~~v-P~~~~~~~~~p~~vi~~~ng~~--~-~~~~~~~-~~~P~~~tE~~-~Gwf~~wG~-~~~~r~~~d~ 273 (523)
.|.++++++..+. =.+.++... ... +. .|.+ | +...|.. ...|.-.+--. .+|+-+-+. ....++++++
T Consensus 214 ~l~~~~~~~qP~~~~vvvn~R~~-~~~--~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~l 289 (384)
T smart00812 214 EFLAWLYNLSPVKDTVVVNDRWG-GTG--CK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKEL 289 (384)
T ss_pred HHHHHHHHhCCCCceEEEEcccc-ccC--CC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHH
Confidence 5666666655543 112232211 000 00 0111 1 1111111 11222111111 244433332 2336799999
Q ss_pred HHHHHHHHhcCCee-eeeeeeccCCCCCCCCCCCcccccccCCCCCCcCCCCCChhHHHHHHHHHHHHHhhhcccCCCCC
Q 009890 274 AFAVARFFQRGGTF-QNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATDPT 352 (523)
Q Consensus 274 ~~~~~~~~~~g~s~-~nyYM~hGGTNfG~~~G~~~~~TSYDy~Api~E~G~~~~pKy~~lk~lh~~i~~~~~~L~~~~~~ 352 (523)
...+....++||++ +|. | -+.+|.+.+..-..|+++...|+..++++..+.|.
T Consensus 290 i~~l~~~Vsk~GnlLLNV---------g-----------------P~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~~ 343 (384)
T smart00812 290 IRDLVDIVSKGGNLLLNV---------G-----------------PKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRPW 343 (384)
T ss_pred HHHHhhhcCCCceEEEcc---------C-----------------CCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCCC
Confidence 99888999999884 332 2 34668887777889999999999999999877664
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0057 Score=65.91 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=79.9
Q ss_pred EECCEEEEEEEEEeeCCCC-Cccch-----HHHHHHHHhCCCCEEEEccccCcCCCCC--ceeec--cCcchHHHHHHHH
Q 009890 35 VIGGKRRVLISGSIHYPRS-TPEMW-----PDLIQKSKDGGLDVIETYVFWNLHEPVR--NQYNF--EGRYDLVKFVKLV 104 (523)
Q Consensus 35 ~idGk~~~l~sG~iHy~R~-~~~~W-----~d~l~k~Ka~GlN~V~tYvfWn~HEp~~--G~ydF--~G~~dL~~fl~la 104 (523)
.+.+...+.+--..|-... ...-| ++.+..||.+|||+||+++.|..+++.. ..|-. .--.-|++.|+.|
T Consensus 46 ~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a 125 (407)
T COG2730 46 QLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWA 125 (407)
T ss_pred eeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHH
Confidence 3333333333333333332 45567 8999999999999999999954445542 22222 1112689999999
Q ss_pred HHcCCEEEEec----CceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccc
Q 009890 105 AEAGLYAHLRI----GPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI 180 (523)
Q Consensus 105 ~~~GL~Vilr~----GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QI 180 (523)
++.||+|++-. |.-.|-| ..|... .. ....+.+++..+-++.|+.+++. .-.||++|+
T Consensus 126 ~~~gi~V~iD~H~~~~~~~~~~------~s~~~~--~~---~~~~~~~~~~~~~w~~ia~~f~~-------~~~VIg~~~ 187 (407)
T COG2730 126 KKLGIYVLIDLHGYPGGNNGHE------HSGYTS--DY---KEENENVEATIDIWKFIANRFKN-------YDTVIGFEL 187 (407)
T ss_pred HhcCeeEEEEecccCCCCCCcC------cccccc--cc---cccchhHHHHHHHHHHHHHhccC-------CCceeeeee
Confidence 99999999874 2111111 122211 00 01223344445555666666663 458999999
Q ss_pred cccccc
Q 009890 181 ENEYGN 186 (523)
Q Consensus 181 ENEyg~ 186 (523)
=||.-.
T Consensus 188 ~NEP~~ 193 (407)
T COG2730 188 INEPNG 193 (407)
T ss_pred ecCCcc
Confidence 999974
No 34
>PLN02998 beta-glucosidase
Probab=96.64 E-value=0.0018 Score=71.50 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=76.5
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC-CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
..|+++|+.||++|+|+-|+-+-|.-.+|. .|.+|-+|-.--+++|+.+.++||..++-. -.=.+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 457999999999999999999999999996 678898999999999999999999877655 23468999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 135 I-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 135 ~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
. -|-.=|..=..|.++++.-++++.+++|
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 5532222224455666555555555555
No 35
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.016 Score=59.77 Aligned_cols=124 Identities=21% Similarity=0.230 Sum_probs=81.6
Q ss_pred hHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHH---HcCCEEEEecCceeccccCCCCCCccccC
Q 009890 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA---EAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
=.|.|+-+|+.|+|-||.-| |+.---.-|+=.=.|+.|+.+.+++++ ..||+|++..= | ++| =.=|+- ..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y--SDf--waDPak-Q~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y--SDF--WADPAK-QK 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c--hhh--ccChhh-cC
Confidence 37999999999999999977 554333345544457789999998875 67999999861 1 111 000110 01
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc-cccccCcc
Q 009890 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN-IDSAYGAA 194 (523)
Q Consensus 135 ~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~-~~~~~g~~ 194 (523)
.|.-..--+-+.-++++-.|++..+..|++++. -+=|+||.||-.+ .-++.|+.
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi------~pdmVQVGNEtn~gflwp~Ge~ 192 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI------LPDMVQVGNETNGGFLWPDGEG 192 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC------CccceEeccccCCceeccCCCC
Confidence 232111223455678888999999999997754 4569999999854 34445643
No 36
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.59 E-value=0.0023 Score=70.21 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=73.4
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC-CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
..|+++|+.||++|+|+-|+-+.|.-.+|. .|.+|-+|-.--+++|+.|.++||.-++-. -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 446999999999999999999999999997 578898998999999999999999877665 24468999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHH
Q 009890 135 IPGIQFRTDNEPFKAEMQRFTAKIVD 160 (523)
Q Consensus 135 ~p~i~~Rt~d~~fl~~~~~~~~~i~~ 160 (523)
.-|-.=|..=..|.++++..++++.+
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd 151 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE 151 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 54431121123355555555555544
No 37
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.57 E-value=0.0028 Score=69.82 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=75.1
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC--CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (523)
..|+++|+.||++|+|+-|+-+-|.-.+|. +|++|=+|-.--+++|+.+.++||..++-. -.=.+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 457999999999999999999999999997 667888888889999999999999877655 2346899997
Q ss_pred CC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 134 ~~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
+. -|-.=|..=..|.++++.-++++.++++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4531222223455555555555555554
No 38
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.53 E-value=0.007 Score=66.49 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=74.4
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC-CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
..|+++|+.||++|+|+-|+-+-|.-.+|. +|++|=+|-.--+++|+.|.++||..++-. ..=.+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 457999999999999999999999999996 678888888899999999999999977765 23468999987
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 135 ~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
..|- .|+...++-.+|.+.+++.++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 6553 234444444455555554444
No 39
>PLN02814 beta-glucosidase
Probab=96.49 E-value=0.0026 Score=70.51 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=75.3
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC-CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
..|+++|+.||++|+|+-|+-+-|.-.+|. +|++|-+|-.--+++|+.|.++||..++-. -.=-+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL--------~H~dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL--------YHYDLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 457999999999999999999999999996 688999999999999999999999877655 23358999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 135 I-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 135 ~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
. -|-.=|..=..|.++++.-++++.+++|
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 4 4431222223455555555555555554
No 40
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.46 E-value=0.003 Score=69.46 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=75.8
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC--CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (523)
..|+++|+.||++|+|+-|+-+-|.-.+|. +|++|=+|-.--+++|+.|.++||.-++-. -.=.+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 457999999999999999999999999997 566888888889999999999999877665 2446899997
Q ss_pred CC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 134 ~~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
+. -|-.=|..=..|.++++.-++++.+++|
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 5532222223455555555555555555
No 41
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.45 E-value=0.01 Score=55.20 Aligned_cols=75 Identities=29% Similarity=0.434 Sum_probs=53.6
Q ss_pred cceeEeeccCCCCCCCccccchhhhhhhccCCCceeeEEEeEEEecCCCccccCCCeeEEEEeecCcEEEEEEcCeeeec
Q 009890 443 SGWSYINEPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGE 522 (523)
Q Consensus 443 ~~W~~~~E~~~~~~~~~~~~~~llEq~~~T~D~sDYLWY~T~v~i~~~~~~~~~~~~~~L~v~s~gh~lh~FVNg~~~G~ 522 (523)
..|....-|-. +....+....+-.+...+...+.+.||.++|++.++. .+....|++.+..+...|||||+++|+
T Consensus 35 ~~w~~i~VP~~-~~~~~~~~~~~~~~~~~~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~ 109 (167)
T PF02837_consen 35 SDWQPISVPGS-WEDDLLRAFVPENGDPELWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGS 109 (167)
T ss_dssp TTSEEEEESSE-GTCCTSSTBTTSTTGCCTSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEE
T ss_pred CCCeEEeCCCE-eecCccceeccccccccccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEee
Confidence 36776654422 2112222222333566777889999999999997544 357889999999999999999999996
No 42
>PLN02849 beta-glucosidase
Probab=96.32 E-value=0.0042 Score=68.83 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=75.8
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC-CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
..|+++|+.||++|+|+-|+-+-|.-.+|. .|++|=+|-.--+++|+.+.++||.-++-. -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 457999999999999999999999999996 478888898899999999999999977655 24468999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 135 I-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 135 ~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
. -|-.=|..=..|.++++.-++++.+++|
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 5532222223455555555555555555
No 43
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.94 E-value=0.012 Score=64.23 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=74.5
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCCc--eeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G--~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (523)
..++++|+.||++|+|+.|+-|-|...-|..+ +.|=.|-.--+++++.|.++|+.-++-. ..=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 44689999999999999999999999999754 4888888889999999999999977765 3445899998
Q ss_pred CC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 134 FI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 134 ~~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
+. .|-.=|..=..|.++.+.-+++.-+.+|
T Consensus 131 ~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 131 KPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 75 4543333333454544444444444444
No 44
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.69 E-value=0.063 Score=49.29 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=67.2
Q ss_pred HHHHHHHhCCCCEEEEccc----c-----CcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCc
Q 009890 60 DLIQKSKDGGLDVIETYVF----W-----NLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPL 130 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~tYvf----W-----n~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 130 (523)
..++.+|++|+|+|.++.- | ..|.+.|+- ++.-|..+++.|++.||.|++|...- -.|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998542 2 345555544 22247999999999999999998655 44555556799
Q ss_pred cccCCCCee-------------eecCChhHHHHHHHHHHHHHHHHH
Q 009890 131 WLHFIPGIQ-------------FRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 131 WL~~~p~i~-------------~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
|+...++-+ .-.-|.+|++++.+-+++|++.+.
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 997533211 112356788877777777766554
No 45
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.26 E-value=0.13 Score=57.16 Aligned_cols=150 Identities=16% Similarity=0.241 Sum_probs=101.5
Q ss_pred cceEEECCEEEEEEEEEeeCC-----CCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHH
Q 009890 31 HRAVVIGGKRRVLISGSIHYP-----RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA 105 (523)
Q Consensus 31 ~~~l~idGk~~~l~sG~iHy~-----R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~ 105 (523)
+..|.|||.|.++.+++.-++ |.+-+.-+-+|+.++++|+|+++.+ .. |.+.-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRVW---GG-----------GvYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRVW---GG-----------GVYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEEe---cC-----------ccccchhHHHHhh
Confidence 357899999999998886542 2344555668999999999999984 32 3445689999999
Q ss_pred HcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccc--ccc
Q 009890 106 EAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQI--ENE 183 (523)
Q Consensus 106 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QI--ENE 183 (523)
+.||.|--.. =|.|| +=..|+.|+..++.=++.=+.+++.|+ .||.+-= |||
T Consensus 393 ~lGilVWQD~-MFACA------------------lYPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACA------------------LYPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhh------------------cccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999875433 13332 223578899999999988888888665 6777764 445
Q ss_pred ccccccccCc-------ccHHH----HHHHHHHHHhcCCCcceEEccC
Q 009890 184 YGNIDSAYGA-------AGKSY----IKWAAGMALSLDTGVPWVMCQQ 220 (523)
Q Consensus 184 yg~~~~~~g~-------~~~~y----~~~l~~~~~~~g~~vP~~~~~~ 220 (523)
-.-.+..|+. .-+.| .+-++++++.-.-..|.+|...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 3322222331 12334 3445566666667789888653
No 46
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=94.07 E-value=0.043 Score=59.80 Aligned_cols=157 Identities=14% Similarity=0.177 Sum_probs=106.8
Q ss_pred eEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcC-CCC---Cceeecc-CcchHHHHHHHHHHc
Q 009890 33 AVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLH-EPV---RNQYNFE-GRYDLVKFVKLVAEA 107 (523)
Q Consensus 33 ~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~H-Ep~---~G~ydF~-G~~dL~~fl~la~~~ 107 (523)
.|.++++++-.++..--++++..++-+++|..|+..|++++|..+ +. |+- +|.-+-. |..-++.|++.|.+.
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fi---LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFI---LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEEE---ecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 377888888777776667777777888899999999999999974 55 662 3332222 234689999999999
Q ss_pred CCEEEEecCceeccccCCCCCC---ccccC-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccc
Q 009890 108 GLYAHLRIGPYVCAEWNFGGFP---LWLHF-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (523)
Q Consensus 108 GL~Vilr~GPyi~aEw~~GG~P---~WL~~-~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENE 183 (523)
+|+|+++. |.+-=.+||-- .|--. .|+-.+ .|+.++..-++|+..+++-.|. ...|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC
Confidence 99998775 44322345532 14321 233111 2566666667788888775554 458999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHH
Q 009890 184 YGNIDSAYGAAGKSYIKWAAGMAL 207 (523)
Q Consensus 184 yg~~~~~~g~~~~~y~~~l~~~~~ 207 (523)
. -.. -...+..++.|+++|.-
T Consensus 148 ~-lv~--~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 P-LVE--APISVNNFWDWSGEMYA 168 (587)
T ss_pred c-ccc--ccCChhHHHHHHHHHHH
Confidence 2 221 12467899999999974
No 47
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.06 E-value=0.9 Score=51.74 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=85.1
Q ss_pred EeeCCCCCc-cchHHHH----HHHHhCCCCEEEE-ccccCcCCCCCcee----------eccCcchHHHHHHHHHHcCCE
Q 009890 47 SIHYPRSTP-EMWPDLI----QKSKDGGLDVIET-YVFWNLHEPVRNQY----------NFEGRYDLVKFVKLVAEAGLY 110 (523)
Q Consensus 47 ~iHy~R~~~-~~W~d~l----~k~Ka~GlN~V~t-YvfWn~HEp~~G~y----------dF~G~~dL~~fl~la~~~GL~ 110 (523)
|+|..-..+ --++..+ .-+|++|+|+|.+ .|+..-.... --| .|.+..||.+|++.|+++||.
T Consensus 143 e~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 143 ELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred EEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 566533322 2344433 5669999999998 6764311100 012 355567999999999999999
Q ss_pred EEEecCceecc-----ccCCCCCCccccCCCC---------eeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 009890 111 AHLRIGPYVCA-----EWNFGGFPLWLHFIPG---------IQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPII 176 (523)
Q Consensus 111 Vilr~GPyi~a-----Ew~~GG~P~WL~~~p~---------i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII 176 (523)
|||-.=+-=++ -+.+.|.|.|....+. ..+-..+|.-++++...++..++...=.++-..--..++
T Consensus 222 VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~ 301 (613)
T TIGR01515 222 VILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASML 301 (613)
T ss_pred EEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhh
Confidence 99885321111 1122233333222110 123344555444444444444333221132221112333
Q ss_pred eccc--------cccccccccccCcccHHHHHHHHHHHHhcCCCcceEE
Q 009890 177 LSQI--------ENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVM 217 (523)
Q Consensus 177 ~~QI--------ENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~ 217 (523)
-++- .||++... ...+..|++.+.+.+++..-++-+|.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~---~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 302 YLDYSRDEGEWSPNEDGGRE---NLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred hhccccccccccccccCCcC---ChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 2221 24443211 12357899999999988776664443
No 48
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=93.73 E-value=1.1 Score=45.18 Aligned_cols=132 Identities=16% Similarity=0.233 Sum_probs=77.9
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE-EecCceeccccCCCCCCcccc
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~ 133 (523)
..-|++.|+.+++.|++.|++.+ +.. ...++..+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46699999999999999999953 222 2223444554 3468899999999999875 44331 11111
Q ss_pred CCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccC---cccHHHHHHHHHHHHhcC
Q 009890 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG---AAGKSYIKWAAGMALSLD 210 (523)
Q Consensus 134 ~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g---~~~~~y~~~l~~~~~~~g 210 (523)
+-..|+.-++...+.+++.++..+ .+ |.++|.+- ..++.. ..... ..-.+.++.+.+.|++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 112345556666677777777777 22 55666542 111100 00000 012355677788888888
Q ss_pred CCcc
Q 009890 211 TGVP 214 (523)
Q Consensus 211 ~~vP 214 (523)
+.+-
T Consensus 147 v~l~ 150 (279)
T TIGR00542 147 VTLA 150 (279)
T ss_pred CEEE
Confidence 7653
No 49
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=93.31 E-value=0.45 Score=52.52 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=44.4
Q ss_pred EEEeeCCCCCccchHHHHHHHH-hCCCCEEEEc-cc---cCcC-C-CCCc--eeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 45 SGSIHYPRSTPEMWPDLIQKSK-DGGLDVIETY-VF---WNLH-E-PVRN--QYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 45 sG~iHy~R~~~~~W~d~l~k~K-a~GlN~V~tY-vf---Wn~H-E-p~~G--~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
-|+-|.....++.|+..|+.++ +.|+.-||+. +| .... + ...| .|||+ .||.++|...+.||+-.+.+
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3445555567888999999997 6899999974 22 1111 1 1223 39999 99999999999999988887
Q ss_pred C
Q 009890 116 G 116 (523)
Q Consensus 116 G 116 (523)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 6
No 50
>PRK05402 glycogen branching enzyme; Provisional
Probab=92.66 E-value=1.7 Score=50.59 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=36.9
Q ss_pred HHHHHhCCCCEEEE-ccc-------cCc-----CCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 62 IQKSKDGGLDVIET-YVF-------WNL-----HEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 62 l~k~Ka~GlN~V~t-Yvf-------Wn~-----HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
|.-+|++|+|+|.. .|+ |.+ ..+.| .|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~---~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS---RFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35569999999997 453 221 11111 25556799999999999999999984
No 51
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.27 E-value=2.1 Score=49.14 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=36.1
Q ss_pred HHHHHhCCCCEEEE-ccc-------cCcC-----CCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 62 IQKSKDGGLDVIET-YVF-------WNLH-----EPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 62 l~k~Ka~GlN~V~t-Yvf-------Wn~H-----Ep~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.-+|++|+|+|+. .|. |.+. .|.+ .|.+..|+.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999996 231 3321 1111 23445799999999999999999874
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=91.10 E-value=0.6 Score=44.30 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=43.5
Q ss_pred hHHHHHHHHhCCCCEEEEccccCcCC-------CCCcee-----eccCcchHHHHHHHHHHcCCEEEEecCceeccc
Q 009890 58 WPDLIQKSKDGGLDVIETYVFWNLHE-------PVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~tYvfWn~HE-------p~~G~y-----dF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aE 122 (523)
+.+.|.-+|++|+|+|.+-=++..-+ -.+..| .|....++.++++.|+++||.||+-.=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 44556669999999998753322111 112222 455668999999999999999999875433333
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.76 E-value=1 Score=47.01 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=69.0
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccC-------cCCCC-------CceeeccCcchHHHHHHHHHHcCCEEEEecCcee
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWN-------LHEPV-------RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn-------~HEp~-------~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi 119 (523)
.++.-.+.|+++|++|+|+|=.=|-+. -.+|. +|. + -|..-|..+|+.|++.||.|+..+ .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 667788999999999999997555432 22221 111 0 022259999999999999999776 111
Q ss_pred ccccC----CCCCCcccc-CCCCeeeec----CCh----hHHHHHHHHHHHHHHHHH-hcccccccCCceEecccc
Q 009890 120 CAEWN----FGGFPLWLH-FIPGIQFRT----DNE----PFKAEMQRFTAKIVDMMK-QEKLYASQGGPIILSQIE 181 (523)
Q Consensus 120 ~aEw~----~GG~P~WL~-~~p~i~~Rt----~d~----~fl~~~~~~~~~i~~~ik-~~~l~~~~gGpII~~QIE 181 (523)
..--. .-..|.|+. +.|+..... .+. |-..++++|+..++..+. ++ +|=++|++
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlD 161 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY--------DVDGIHLD 161 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC--------CCCeEEec
Confidence 11001 112577875 455532332 111 224677888777666554 33 35566766
No 54
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=90.72 E-value=2.9 Score=42.00 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=76.2
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE-EecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 134 (523)
--|++.++.++++|++.|++.+. ..|+ .....+|+ ..++..+.++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 36999999999999999999642 2222 01122333 3478999999999999876 3222 11000
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccccccccc-ccCcccHHHHHHHHHHHHhcCCCc
Q 009890 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS-AYGAAGKSYIKWAAGMALSLDTGV 213 (523)
Q Consensus 135 ~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~-~~g~~~~~y~~~l~~~~~~~g~~v 213 (523)
.+.+.|+..++...+.++++++..+. | |.+.|-+.--..+..... ..-..-.+.++.+.++|++.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 12335566666666677777777773 2 445554321000000000 000112356788888898888765
Q ss_pred c
Q 009890 214 P 214 (523)
Q Consensus 214 P 214 (523)
-
T Consensus 150 ~ 150 (284)
T PRK13210 150 A 150 (284)
T ss_pred E
Confidence 3
No 55
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.97 E-value=6 Score=46.11 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=39.2
Q ss_pred HHHHHHhCCCCEEEE-ccc-------cCcC-----CCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 61 LIQKSKDGGLDVIET-YVF-------WNLH-----EPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 61 ~l~k~Ka~GlN~V~t-Yvf-------Wn~H-----Ep~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
.|.-+|++|+|+|+. .|+ |.+. .|.+ .|.+..++.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 457789999999996 342 4321 1111 3555679999999999999999998533
No 56
>PRK09936 hypothetical protein; Provisional
Probab=89.92 E-value=3.8 Score=42.52 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=47.4
Q ss_pred CCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc-chHHHHHHHHHHcCCEEEEec
Q 009890 51 PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR-YDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 51 ~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~-~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+++++.|+.+++.+|+.|++++= |-|..- |.=||.|. -.|.+.++.|++.||.|++..
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 467999999999999999999874 455443 11188875 479999999999999999854
No 57
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=89.42 E-value=3.7 Score=41.43 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=59.1
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHc-CCEEEEecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
.-|++.|+.+|++|++.|++-+....-...+ .....++..+.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 6799999999999999999976432111111 11346899999999999 6665543 2321 0
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccc
Q 009890 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (523)
Q Consensus 135 ~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIEN 182 (523)
.+...++.-++...+.+++.++..+. | |-+.|.+...+
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~~--l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCEE--L----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCCC
Confidence 12223444445555556666666662 2 44566555443
No 58
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=89.37 E-value=32 Score=36.41 Aligned_cols=234 Identities=14% Similarity=0.127 Sum_probs=107.5
Q ss_pred HHHHHHHhCCCCEEEE-------ccccCcCCCCCceeeccCcch-HHHHHHHHHHcCCEEEEecCceec-cccCCCCCCc
Q 009890 60 DLIQKSKDGGLDVIET-------YVFWNLHEPVRNQYNFEGRYD-LVKFVKLVAEAGLYAHLRIGPYVC-AEWNFGGFPL 130 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~t-------YvfWn~HEp~~G~ydF~G~~d-L~~fl~la~~~GL~Vilr~GPyi~-aEw~~GG~P~ 130 (523)
.-.+.+|++|+.-|=. +-.|...-..-..-+-.+.+| +..|.+.|+++||.+-+ |.+ ++|.....+.
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~----Y~S~~dw~~~~~~~ 170 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGL----YYSPWDWHHPDYPP 170 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEE----EEESSSCCCTTTTS
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEE----EecchHhcCcccCC
Confidence 3467889999985532 223655433222222223456 66788999999998776 433 3665433332
Q ss_pred cccCCCCeeeecCChhHHHHHH-HHHHHHHHHHHhccc--ccccCCceEeccccccccccccccCcccHHHHHHHHHHHH
Q 009890 131 WLHFIPGIQFRTDNEPFKAEMQ-RFTAKIVDMMKQEKL--YASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMAL 207 (523)
Q Consensus 131 WL~~~p~i~~Rt~d~~fl~~~~-~~~~~i~~~ik~~~l--~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~ 207 (523)
-..... .......+.+.++++ .+..+|-+.+.+.++ ++-+||.- . .....-...+.++++
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~--------~--------~~~~~~~~~~~~~i~ 233 (346)
T PF01120_consen 171 DEEGDE-NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWP--------D--------PDEDWDSAELYNWIR 233 (346)
T ss_dssp SCHCHH-CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTS--------C--------CCTHHHHHHHHHHHH
T ss_pred CccCCc-ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCC--------c--------cccccCHHHHHHHHH
Confidence 211100 000112334444444 444555555553321 11122110 0 111222366777777
Q ss_pred hcCCCcceEEccCCCCCCccccCCCCccc-CCCCCC-CCCCCceEeeec-cccccccCCCCCCCCHHHHHHHHHHHHhcC
Q 009890 208 SLDTGVPWVMCQQSDAPDPIINTCNGFYC-DQFTPN-SNNKPKMWTENW-SGWFLSFGGAVPYRPVEDLAFAVARFFQRG 284 (523)
Q Consensus 208 ~~g~~vP~~~~~~~~~p~~vi~~~ng~~~-~~~~~~-~~~~P~~~tE~~-~Gwf~~wG~~~~~r~~~d~~~~~~~~~~~g 284 (523)
+++-++-+............ .+.+ +...+. ....|.-.+.-. .+||- =-.....++++.+...+....++|
T Consensus 234 ~~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y-~~~~~~~ks~~~li~~l~~~vs~n 307 (346)
T PF01120_consen 234 KLQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGY-NTPDEKYKSADELIDILVDSVSRN 307 (346)
T ss_dssp HHSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS--CGGGCGS--HHHHHHHHHHHHTBT
T ss_pred HhCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCcc-cCCCCCcCCHHHHHHHHHHHhccC
Confidence 77666533221111110000 0000 111111 111232222222 34442 011234568888888888889999
Q ss_pred Cee-eeeeeeccCCCCCCCCCCCcccccccCCCCCCcCCCCCChhHHHHHHHHHHHHHhhhcc
Q 009890 285 GTF-QNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAAL 346 (523)
Q Consensus 285 ~s~-~nyYM~hGGTNfG~~~G~~~~~TSYDy~Api~E~G~~~~pKy~~lk~lh~~i~~~~~~L 346 (523)
|++ +|. +.+.+|.+.++.-..||++...|+..+.++
T Consensus 308 gnlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~ngeaI 344 (346)
T PF01120_consen 308 GNLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGEAI 344 (346)
T ss_dssp EEEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGGGT
T ss_pred ceEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccccc
Confidence 884 443 234668887778889999999999887765
No 59
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=88.77 E-value=11 Score=44.29 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=43.8
Q ss_pred cchHHHHHHHHhCCCCEEEEc-cc-------cCcCCC---CCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 56 EMWPDLIQKSKDGGLDVIETY-VF-------WNLHEP---VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tY-vf-------Wn~HEp---~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
+.|++.|..+|++|+|+|++- |+ |.++-. .+ .-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 447888999999999999962 32 433211 01 113555678999999999999999988533
No 60
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=88.65 E-value=1.1 Score=41.96 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=73.5
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeee
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFR 141 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~R 141 (523)
|+.++++|++.|+............ ..+++++.++++++||.++.--.+.. |.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~-----------~~~--~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN-----------FWS--PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES-----------SSC--TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc-----------ccc--cccccc
Confidence 5789999999999976533222111 34799999999999999653221110 000 111123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccc--cccccccc-ccCcccHHHHHHHHHHHHhcCCCc
Q 009890 142 TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIE--NEYGNIDS-AYGAAGKSYIKWAAGMALSLDTGV 213 (523)
Q Consensus 142 t~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIE--NEyg~~~~-~~g~~~~~y~~~l~~~~~~~g~~v 213 (523)
+.+++ .+...+.+.+.++..+. | |.+.|.+..- +....... ..-+.-.+.++.|.+++.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 77777788888888883 3 5566666644 22211100 000123456788888888888664
No 61
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.33 E-value=0.9 Score=48.48 Aligned_cols=72 Identities=26% Similarity=0.268 Sum_probs=47.9
Q ss_pred EEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceecc
Q 009890 44 ISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 44 ~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
+|=++++...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..+++.|++.||.|++-+.|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 45567777778889999999999999988777 678888532121 1378899999999999999999875443
No 62
>PRK14705 glycogen branching enzyme; Provisional
Probab=87.02 E-value=13 Score=45.93 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCCEEEE-ccc-------cCcCC--CCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 60 DLIQKSKDGGLDVIET-YVF-------WNLHE--PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~t-Yvf-------Wn~HE--p~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.|.-+|++|+|+|+. .|+ |.+.- ...=.=.|.+-.|+..|++.|+++||.|||-.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3467889999999996 342 43210 00001134556799999999999999999874
No 63
>PRK12313 glycogen branching enzyme; Provisional
Probab=86.99 E-value=8.9 Score=43.90 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=38.3
Q ss_pred HHHHHHhCCCCEEEE-ccc-------cCc-----CCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 61 LIQKSKDGGLDVIET-YVF-------WNL-----HEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 61 ~l~k~Ka~GlN~V~t-Yvf-------Wn~-----HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+|.-+|++|+|+|.. .|+ |.+ ..+.| .|.+..||.+|++.|+++||.|||-.
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 357889999999995 453 321 11111 35566799999999999999999984
No 64
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=86.67 E-value=7.3 Score=41.18 Aligned_cols=141 Identities=17% Similarity=0.233 Sum_probs=89.4
Q ss_pred CCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHH---HcCCEEEEecCceeccccCCCCCC
Q 009890 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA---EAGLYAHLRIGPYVCAEWNFGGFP 129 (523)
Q Consensus 53 ~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P 129 (523)
..|+..+..++.||+.||+.--.|--| |.|++-|++-++..- +.+|..+|. |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 477888999999999999999988755 457777877776654 334544443 12222311
Q ss_pred ccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHhc
Q 009890 130 LWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSL 209 (523)
Q Consensus 130 ~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~ 209 (523)
.|-.....+.+-..... .+..+++++.|++.+++..++--+|-||+++=--.+. ++-++.++.+++.|++.
T Consensus 117 ~w~g~~~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~ 187 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEA 187 (345)
T ss_pred ccCCCCccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHc
Confidence 12222122211111110 1224667788889999887777789999987322221 24678999999999999
Q ss_pred CCCcceEEccC
Q 009890 210 DTGVPWVMCQQ 220 (523)
Q Consensus 210 g~~vP~~~~~~ 220 (523)
|+.-+.+....
T Consensus 188 G~~giyii~~~ 198 (345)
T PF14307_consen 188 GLPGIYIIAVQ 198 (345)
T ss_pred CCCceEEEEEe
Confidence 99866554443
No 65
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=86.49 E-value=14 Score=39.78 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=53.3
Q ss_pred CccchHHHHHHHHhCCCCEEEEc----cccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE-ecCceeccccCCCCC
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETY----VFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL-RIGPYVCAEWNFGGF 128 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tY----vfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil-r~GPyi~aEw~~GG~ 128 (523)
++....+.+++++++|++.|+.. ++|..-..+. ..++.++-+++++.||.|.. -++-+.+..+..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g-- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG-- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCCccccCC--
Confidence 33456799999999999999964 2222111000 23578899999999999763 3321111111111
Q ss_pred CccccCCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 129 PLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 129 P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
.+-+.|+..+++.-+.+++.++.-+
T Consensus 101 ----------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 ----------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2334466666665555566666666
No 66
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=86.19 E-value=10 Score=37.55 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=35.5
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
-+++.++++++.|++.|+....+ ..++..+.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 47899999999999999985422 13688899999999999864
No 67
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.91 E-value=1.3 Score=48.71 Aligned_cols=61 Identities=8% Similarity=0.202 Sum_probs=41.7
Q ss_pred ccchHH---HHHHHHhCCCCEEEE-ccccCc-----CCCCCce-e-------------eccCcchHHHHHHHHHHcCCEE
Q 009890 55 PEMWPD---LIQKSKDGGLDVIET-YVFWNL-----HEPVRNQ-Y-------------NFEGRYDLVKFVKLVAEAGLYA 111 (523)
Q Consensus 55 ~~~W~d---~l~k~Ka~GlN~V~t-YvfWn~-----HEp~~G~-y-------------dF~G~~dL~~fl~la~~~GL~V 111 (523)
.+.|.. .|.-+|++|+++|-+ .++-+. |--.+-- | .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 355764 456679999999987 455432 2222211 1 2445678999999999999999
Q ss_pred EEec
Q 009890 112 HLRI 115 (523)
Q Consensus 112 ilr~ 115 (523)
|+-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9863
No 68
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=85.27 E-value=3 Score=43.84 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=70.2
Q ss_pred CccchHHHHHHHHhCCCCEEEEcc-------ccCcCCCCCceeecc-C-cchHHHHHHHHHHcCCEEEEecCceeccccC
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYV-------FWNLHEPVRNQYNFE-G-RYDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYv-------fWn~HEp~~G~ydF~-G-~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 124 (523)
.++.-+..|+.+|+.|+|+|-+-| .+..-.|..-+..-. . ..|+.++++.++++|+|+|.|+=-|=- ..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD-~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKD-PVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecC-hHH
Confidence 345678899999999999987643 344444433222111 2 269999999999999999999722110 000
Q ss_pred CCCCCccccC-CCCeeeecCC-----hhHHHHHHHHHHHHHHHHHhccc
Q 009890 125 FGGFPLWLHF-IPGIQFRTDN-----EPFKAEMQRFTAKIVDMMKQEKL 167 (523)
Q Consensus 125 ~GG~P~WL~~-~p~i~~Rt~d-----~~fl~~~~~~~~~i~~~ik~~~l 167 (523)
..--|.|-.. ..|-..|... .||.+++.+|.-.|++..++.++
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GF 138 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGF 138 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 0113444432 1121122211 26889999999999999986643
No 69
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.96 E-value=8 Score=38.95 Aligned_cols=127 Identities=18% Similarity=0.294 Sum_probs=74.6
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE-EecCceeccccCCCCCCccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 134 (523)
--|.+.++.++++|++.|+..+. ..++ ....++++ ..++..+.++++++||.|. +.++.. ..+|
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 35999999999999999999542 1111 01122333 2368899999999999875 332210 0011
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCc-------ccHHHHHHHHHHHH
Q 009890 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGA-------AGKSYIKWAAGMAL 207 (523)
Q Consensus 135 ~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~-------~~~~y~~~l~~~~~ 207 (523)
+-+.|+.-++...+.+++.++..+ .| |.+.|.+. +.. ..++. .-.+.++.|.++|+
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 112455556666677777777777 33 56666542 110 00111 11346777888888
Q ss_pred hcCCCcc
Q 009890 208 SLDTGVP 214 (523)
Q Consensus 208 ~~g~~vP 214 (523)
+.|+.+=
T Consensus 149 ~~GV~i~ 155 (283)
T PRK13209 149 RASVTLA 155 (283)
T ss_pred HhCCEEE
Confidence 8887653
No 70
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.85 E-value=0.99 Score=44.90 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCCEEEEccccCcCC----CCCcee-----eccCcchHHHHHHHHHHcCCEEEEec
Q 009890 60 DLIQKSKDGGLDVIETYVFWNLHE----PVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~tYvfWn~HE----p~~G~y-----dF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.|.-+|++|+|+|.+-=++...+ -.+--| .|.+..++.++++.|++.||+|||-.
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 567788999999999853333211 111111 13445799999999999999999875
No 71
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=84.78 E-value=15 Score=36.61 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=34.7
Q ss_pred hHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
+++.|++++++|++.|++.. |. ..++..+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 68899999999999999932 11 13799999999999999864
No 72
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=84.38 E-value=17 Score=36.34 Aligned_cols=130 Identities=13% Similarity=0.110 Sum_probs=71.3
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCC
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIP 136 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p 136 (523)
-+++.|+.++++|++.|++..-. .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 58999999999999999984211 011111 121 24688899999999998753 3321 123332221
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccc-cc-ccccccCcccHHHHHHHHHHHHhcCCCc
Q 009890 137 GIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE-YG-NIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (523)
Q Consensus 137 ~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENE-yg-~~~~~~g~~~~~y~~~l~~~~~~~g~~v 213 (523)
..++.-+++..+.+++.++..+ .| |.+.|.+-.-.. +. .....+ +.-.+.++.|.+.|++.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444555556666666666 22 445544421111 00 000001 123356888888898887754
No 73
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=83.18 E-value=4.4 Score=50.03 Aligned_cols=112 Identities=14% Similarity=0.239 Sum_probs=69.4
Q ss_pred eEEECCEEEEEEEEE---eeCCCC--CccchHHHHHHHHhCCCCEEEE-ccc-cCc-CCC--CCceee----c----cCc
Q 009890 33 AVVIGGKRRVLISGS---IHYPRS--TPEMWPDLIQKSKDGGLDVIET-YVF-WNL-HEP--VRNQYN----F----EGR 94 (523)
Q Consensus 33 ~l~idGk~~~l~sG~---iHy~R~--~~~~W~d~l~k~Ka~GlN~V~t-Yvf-Wn~-HEp--~~G~yd----F----~G~ 94 (523)
.|.|||++.+.+.+- -..+++ +-+.|++.|+.+|+.|+|+|-. .++ =.. ..| ..+++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 466777555554332 234554 6688999999999999999985 454 110 000 112222 3 366
Q ss_pred chHHHHHHHHHHc-CCEEEEecCceeccccCCCCC-CccccCCCCeeeecCChhHHHH
Q 009890 95 YDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGF-PLWLHFIPGIQFRTDNEPFKAE 150 (523)
Q Consensus 95 ~dL~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~-P~WL~~~p~i~~Rt~d~~fl~~ 150 (523)
.|+.++++.+++. ||.+|+-.= ||.=+. =.||.+.|..-+-..+.|+|+.
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDvV------~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDIV------FNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEee------ecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 7899999999986 999998751 333332 2488777764444444455443
No 74
>PRK01060 endonuclease IV; Provisional
Probab=82.68 E-value=14 Score=37.14 Aligned_cols=83 Identities=12% Similarity=0.227 Sum_probs=54.4
Q ss_pred hHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEE---EEecCceeccccCCCCCCccccC
Q 009890 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA---HLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V---ilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
+++.|++++++|++.|++.+- +-|.-.++.++ ..++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLE---ELNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999999652 11211122222 126888999999999973 32 23432
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 135 IPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 135 ~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
+.+-+.|+..+++..+.+++.++..+
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~ 99 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA 99 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11334567777777777777777766
No 75
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=81.89 E-value=2.6 Score=43.56 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=51.8
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCC-CceeeccCc--chHHHHHHHHHHcCCEEEEecCceecc
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
+|+.|. +.+...+.++++|+.||.+=..++-..++... .|.|.|.-. -|..++++..++.|+++++.+=|+|+.
T Consensus 13 ~~~~~~~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 13 LWLSRSFYYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred HHHHcccCCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 344453 67778899999999996654444433333322 245665532 389999999999999999999888864
No 76
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.48 E-value=1 Score=39.21 Aligned_cols=19 Identities=47% Similarity=0.502 Sum_probs=13.2
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 009890 1 MASKEILLLVLCWGFVVLA 19 (523)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (523)
|+||.+|++.++++++|++
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9999988877665544433
No 77
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=81.34 E-value=13 Score=38.43 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=50.6
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCC--------CCceeeccCc--chHHHHHHHHHHcCCEEEEe
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP--------VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp--------~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr 114 (523)
+|..|. +.+.-++.++++|+.||-+=-+++-..+|.- .-+.|.|.-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 455553 6677789999999999876555554333321 2356666532 48999999999999999988
Q ss_pred cCcee
Q 009890 115 IGPYV 119 (523)
Q Consensus 115 ~GPyi 119 (523)
+=|+|
T Consensus 94 v~P~~ 98 (292)
T cd06595 94 LHPAD 98 (292)
T ss_pred eCCCc
Confidence 75543
No 78
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=81.28 E-value=20 Score=38.91 Aligned_cols=164 Identities=12% Similarity=0.063 Sum_probs=88.1
Q ss_pred eCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCC----ceeeccCc---chHHHHHHHHHHcCCEEEEecCceecc
Q 009890 49 HYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR----NQYNFEGR---YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 49 Hy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~----G~ydF~G~---~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
+|+..+.+.-.+.++++++.|++.+.+-=-|....... |.|--.-. .-|..+++.+++.||..=|...|.+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46667778888999999999999988877786542211 33322211 139999999999999999998887664
Q ss_pred c--cCCCCCCccccCCCCee---------eecCChhHHHHHHHHHHHHHHHHHhccccc-ccCCceEecccccccccccc
Q 009890 122 E--WNFGGFPLWLHFIPGIQ---------FRTDNEPFKAEMQRFTAKIVDMMKQEKLYA-SQGGPIILSQIENEYGNIDS 189 (523)
Q Consensus 122 E--w~~GG~P~WL~~~p~i~---------~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~-~~gGpII~~QIENEyg~~~~ 189 (523)
. --+-..|.|+...++.. +-..+|...+++... |.+.+++.++-+ +=..+.-+.+..+...
T Consensus 131 ~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~---i~~ll~~~gidYiK~D~n~~~~~~~~~~~---- 203 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEV---IDRLLREWGIDYIKWDFNRDITEAGSPSL---- 203 (394)
T ss_dssp SSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHH---HHHHHHHTT-SEEEEE-TS-TTS-SSTTS----
T ss_pred chhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHH---HHHHHHhcCCCEEEeccccCCCCCCCCCc----
Confidence 3 11335799997755421 223345444444333 334455554321 2112222222222211
Q ss_pred ccCcccHHHHHH---HHHHHHhcCCCcceEEccCC
Q 009890 190 AYGAAGKSYIKW---AAGMALSLDTGVPWVMCQQS 221 (523)
Q Consensus 190 ~~g~~~~~y~~~---l~~~~~~~g~~vP~~~~~~~ 221 (523)
++...+|+.- +.+..++..-+|-+-.|...
T Consensus 204 --~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 204 --PEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp ---GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred --hHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 1234456553 34444556677777788754
No 79
>PRK09989 hypothetical protein; Provisional
Probab=81.06 E-value=15 Score=36.67 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=34.6
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
-.++.|++++++|++.|++..+|. .+...+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 468999999999999999954332 2467888889999999874
No 80
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.88 E-value=7.9 Score=42.24 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=76.8
Q ss_pred CccchHHHHHHHHhCCCCEEEEcc-------------ccCcCCCCCceeecc-CcchHHHHHHHHHHcCCEEEEecCcee
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYV-------------FWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYV 119 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYv-------------fWn~HEp~~G~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPyi 119 (523)
.+++-.+.|.+++++|+|||-.=| +|..-- ||..-=. |..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 677778999999999999986432 233222 3433212 333588889999999999999988877
Q ss_pred ccccCCC---CCCccccC-CCCeee-ecCC-------hhHHHHHHHHHHH-HHHHHHhcccccccCCceEecccccccc
Q 009890 120 CAEWNFG---GFPLWLHF-IPGIQF-RTDN-------EPFKAEMQRFTAK-IVDMMKQEKLYASQGGPIILSQIENEYG 185 (523)
Q Consensus 120 ~aEw~~G---G~P~WL~~-~p~i~~-Rt~d-------~~fl~~~~~~~~~-i~~~ik~~~l~~~~gGpII~~QIENEyg 185 (523)
-|--..- --|.|+.. .|+... |.+. .++.-+++.|+.. ++++++++ .|=++|++-=+.
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 6531111 13566654 244322 2221 2456778888877 55566644 466788766554
No 81
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=80.62 E-value=12 Score=38.88 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=53.9
Q ss_pred CCCCccchHHHHHHHHhCCC--CEEEEccccCcCCCCCceeeccC--cchHHHHHHHHHHcCCEEEEecCceeccc
Q 009890 51 PRSTPEMWPDLIQKSKDGGL--DVIETYVFWNLHEPVRNQYNFEG--RYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (523)
Q Consensus 51 ~R~~~~~W~d~l~k~Ka~Gl--N~V~tYvfWn~HEp~~G~ydF~G--~~dL~~fl~la~~~GL~Vilr~GPyi~aE 122 (523)
...+.+.-.+.++++++.|+ ++|-+-..|- ..-|.|.|.- .-|..++++..++.|+++++.+=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 34577888999999999995 5666666563 3456666653 34899999999999999999999999853
No 82
>PRK10150 beta-D-glucuronidase; Provisional
Probab=80.49 E-value=2.6 Score=47.77 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=37.0
Q ss_pred CceeeEEEeEEEecCCCccccCCCeeEEEEeecCcEEEEEEcCeeeec
Q 009890 475 QSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGE 522 (523)
Q Consensus 475 ~sDYLWY~T~v~i~~~~~~~~~~~~~~L~v~s~gh~lh~FVNg~~~G~ 522 (523)
-.-..||.++|++.+. +.++...|+.+.......|||||++||.
T Consensus 63 ~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~ 106 (604)
T PRK10150 63 YVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVME 106 (604)
T ss_pred CcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeee
Confidence 3445899999999743 2357899999999999999999999995
No 83
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=80.27 E-value=37 Score=38.60 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=77.7
Q ss_pred cchHHHHHHHHhCCCCEEEEc-cccCcCCCCCcee--------eccCc----chHHHHHHHHHHcCCEEEEecCceeccc
Q 009890 56 EMWPDLIQKSKDGGLDVIETY-VFWNLHEPVRNQY--------NFEGR----YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tY-vfWn~HEp~~G~y--------dF~G~----~dL~~fl~la~~~GL~Vilr~GPyi~aE 122 (523)
+.=++.|..|+..-||.|+.| ..|.+|.|.|+.= |+.|+ .-+...|+.|++.||.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456789999999999999999 8999999987433 34454 2478999999999999885432222222
Q ss_pred c--CCCCCCccccC-CCCe------ee-----------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccc
Q 009890 123 W--NFGGFPLWLHF-IPGI------QF-----------RTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIEN 182 (523)
Q Consensus 123 w--~~GG~P~WL~~-~p~i------~~-----------Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIEN 182 (523)
. ..|=.|.|-.. .++- .+ -..|+.++++.-.=+.+.++.+.=.+.+..+=|+.--+ .+
T Consensus 198 ~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~--~d 275 (559)
T PF13199_consen 198 NYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV--YD 275 (559)
T ss_dssp T--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--GG
T ss_pred CcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--cc
Confidence 2 35567788753 2221 11 12245555555444444444443333333333433222 11
Q ss_pred cccccccccCcccHHHHHHHHHHHHhcCCCcceEEcc
Q 009890 183 EYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (523)
Q Consensus 183 Eyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (523)
.-|... ..-...|...|.++-..+ .+-+++|+.
T Consensus 276 ~~G~~i---~~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 276 YDGNKI---YDLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp TT---G---GECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred CCCCCc---hhhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 112110 012346666666655444 667788765
No 84
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.08 E-value=3.6 Score=46.23 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCCEEEE-ccc-------cCcC-----CCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 60 DLIQKSKDGGLDVIET-YVF-------WNLH-----EPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~t-Yvf-------Wn~H-----Ep~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.|.-+|++|+|+|.. .|+ |.+. .|.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4578889999999996 342 3221 2221 34556789999999999999999874
No 85
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=76.95 E-value=19 Score=38.98 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=67.5
Q ss_pred CCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCe--------eeecCChhHHHHHHHHH
Q 009890 84 PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI--------QFRTDNEPFKAEMQRFT 155 (523)
Q Consensus 84 p~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i--------~~Rt~d~~fl~~~~~~~ 155 (523)
+..|.|||+.+..=+.|++.|++.|...++-. .=-.|.|+...... .+| +...+....|+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk---~d~y~~FA~YL 160 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLK---PDNYDAFADYL 160 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS----TT-HHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccC---hhHHHHHHHHH
Confidence 45699999988778889999999999987754 12478888763211 122 33456666777
Q ss_pred HHHHHHHHhcccccccCCceEeccccccccccccccC---------cccHHHHHHHHHHHHhcCCCcceEEccC
Q 009890 156 AKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG---------AAGKSYIKWAAGMALSLDTGVPWVMCQQ 220 (523)
Q Consensus 156 ~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g---------~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 220 (523)
..++++++++++ +|=-+--=||...- +..+ +...+.++.|....++.|+..-+.+|+.
T Consensus 161 a~Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 161 ADVVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 777787765543 44444455887632 2111 2346778889999999999877666664
No 86
>PLN00196 alpha-amylase; Provisional
Probab=76.54 E-value=10 Score=41.52 Aligned_cols=57 Identities=9% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCEEEEc-cccCc--CCCCCce-ee-----ccCcchHHHHHHHHHHcCCEEEEec
Q 009890 59 PDLIQKSKDGGLDVIETY-VFWNL--HEPVRNQ-YN-----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tY-vfWn~--HEp~~G~-yd-----F~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+.|.-+|++|+++|-+- ++=+. |--.+.. |+ |....+|.++++.|++.||.||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356677799999999874 43221 2112221 22 3345689999999999999999875
No 87
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=76.29 E-value=4.2 Score=34.23 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=24.9
Q ss_pred cCCceEecccccc-cccccc----ccCc-ccHHHHHHHHHH---HHhcCCCcceEEc
Q 009890 171 QGGPIILSQIENE-YGNIDS----AYGA-AGKSYIKWAAGM---ALSLDTGVPWVMC 218 (523)
Q Consensus 171 ~gGpII~~QIENE-yg~~~~----~~g~-~~~~y~~~l~~~---~~~~g~~vP~~~~ 218 (523)
+...|.+|+|-|| .++... ..+. ....+.+||+++ +|+.+...|+..+
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 3458999999999 552221 1111 234555555555 5667888887654
No 88
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.00 E-value=4.3 Score=45.64 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=40.9
Q ss_pred chHHHHHHHHhCCCCEEEE-ccccCcCCCCCceee----------ccCcchHHHHHHHHHHcCCEEEEec
Q 009890 57 MWPDLIQKSKDGGLDVIET-YVFWNLHEPVRNQYN----------FEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~t-YvfWn~HEp~~G~yd----------F~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
-+.+.|.-+|++|+++|-+ .++-+... ...|+ |.+..||.++++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567788899999999987 35432110 01222 4556799999999999999999874
No 89
>PLN02960 alpha-amylase
Probab=75.99 E-value=93 Score=37.32 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCCEEEE-ccc-------cCcCCCC--CceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 60 DLIQKSKDGGLDVIET-YVF-------WNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~t-Yvf-------Wn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.|.-+|++|+|+|+. .|+ |.+.--- .=.-.|....+|.+|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4588899999999997 343 4321100 000124445789999999999999999985
No 90
>PRK12677 xylose isomerase; Provisional
Probab=75.59 E-value=55 Score=35.36 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=54.3
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeecc---CcchHHHHHHHHHHcCCEEE-EecCceeccccCCCCCCccc
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE---GRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGFPLWL 132 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~---G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL 132 (523)
.+.+.++++++.|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-+.-|.+ |.+.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~--------p~~~ 97 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTH--------PVFK 97 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCC--------cccc
Confidence 47899999999999999883 1111112111 11358899999999999976 44421111 2111
Q ss_pred cCCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 133 ~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
.+ .+-+.|+..++...+.+.+-++.-+
T Consensus 98 ---~g-~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 98 ---DG-AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ---CC-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 2445567766766666666666666
No 91
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=75.22 E-value=5.1 Score=45.62 Aligned_cols=55 Identities=18% Similarity=0.365 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCEEEE-ccc---------------cCcCC-----CCCceee----ccC--cchHHHHHHHHHHcCCEEE
Q 009890 60 DLIQKSKDGGLDVIET-YVF---------------WNLHE-----PVRNQYN----FEG--RYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~t-Yvf---------------Wn~HE-----p~~G~yd----F~G--~~dL~~fl~la~~~GL~Vi 112 (523)
+.|.-+|++|+|+|++ .|+ |.+.- |.+ .|- +.+ ..+|..|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4588999999999996 343 33221 110 010 110 2689999999999999999
Q ss_pred Eec
Q 009890 113 LRI 115 (523)
Q Consensus 113 lr~ 115 (523)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 92
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=74.92 E-value=4.5 Score=48.93 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=35.0
Q ss_pred eEEEeEEEecCCCccccCCCeeEEEEeecCcEEEEEEcCeeeec
Q 009890 479 LWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGE 522 (523)
Q Consensus 479 LWY~T~v~i~~~~~~~~~~~~~~L~v~s~gh~lh~FVNg~~~G~ 522 (523)
.||.+.|++.++- .+++..|+.+...+..+|+|||++||.
T Consensus 111 g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~ 150 (1021)
T PRK10340 111 GAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGF 150 (1021)
T ss_pred EEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEecc
Confidence 6999999997542 357889999999999999999999996
No 93
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=74.46 E-value=13 Score=40.25 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 53 ~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
++.+.|+.+|+.+|++|||....=+- ....+.. ..|...++.|++.|.++.+-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 38899999999999999999887552 1222222 368889999999999999887
No 94
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=74.25 E-value=5.2 Score=40.60 Aligned_cols=52 Identities=15% Similarity=0.363 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
+...++-|+.+|+.||++|++- .|..+.+ ..+..++|+.+++.|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiS---------dGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEIS---------DGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEec---------CCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 6778999999999999999983 3433333 34678999999999999999998
No 95
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=74.01 E-value=25 Score=37.16 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=55.9
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc--chH--HHHHHHHHHcCCEEEEecCceec
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDL--VKFVKLVAEAGLYAHLRIGPYVC 120 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~--~dL--~~fl~la~~~GL~Vilr~GPyi~ 120 (523)
+|..|. +.+..++.++++++.||.+=.+.+-+.+++ ..+.|.|... -|. .++++..++.|++|++.+=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 567788999999999987655555444443 2467777653 377 99999999999999999999998
Q ss_pred cc
Q 009890 121 AE 122 (523)
Q Consensus 121 aE 122 (523)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 96
>PRK10785 maltodextrin glucosidase; Provisional
Probab=73.91 E-value=6.1 Score=44.95 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCEEEE-ccccC--cCCCCCcee-----eccCcchHHHHHHHHHHcCCEEEEec
Q 009890 59 PDLIQKSKDGGLDVIET-YVFWN--LHEPVRNQY-----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~t-YvfWn--~HEp~~G~y-----dF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+.|.-+|++|+|+|-+ .||=+ .|---...| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35677789999999997 56532 111111111 25566799999999999999999864
No 97
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=73.89 E-value=25 Score=35.82 Aligned_cols=125 Identities=22% Similarity=0.400 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCCC--CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccc
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPV--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 132 (523)
.-.|+++|.-+|++||+-|+.-| .|.- --+-||+. ...-.+.+++.+.|+ |+ |-+| |
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSv----DEsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC-----------l 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSV----DESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC-----------L 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEec----cchHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------h
Confidence 44699999999999999999966 4442 34667772 235567788899997 33 3333 1
Q ss_pred cCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCc----ccHHH---HHHHHHH
Q 009890 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGA----AGKSY---IKWAAGM 205 (523)
Q Consensus 133 ~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~----~~~~y---~~~l~~~ 205 (523)
..+...-|-+.|+.-.+...+.+.+-+..-. +| .|=-+|+- -|+- .|.+ ..+.| |+|..++
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQLA-GYDV---YYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQLA-GYDV---YYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEeec-ccee---eeccCCHHHHHHHHHHHHHHHHH
Confidence 1111122667899888888777777666555 33 34455652 1221 1221 23444 5677777
Q ss_pred HHhcCCC
Q 009890 206 ALSLDTG 212 (523)
Q Consensus 206 ~~~~g~~ 212 (523)
|.+.++.
T Consensus 144 A~~aqV~ 150 (287)
T COG3623 144 AARAQVM 150 (287)
T ss_pred HHhhccE
Confidence 7776654
No 98
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=73.71 E-value=16 Score=37.55 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=60.8
Q ss_pred eEEEecceEEECCEEEEEEEEE--eeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeecc--CcchHHHHH
Q 009890 26 NVTYDHRAVVIGGKRRVLISGS--IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE--GRYDLVKFV 101 (523)
Q Consensus 26 ~vt~d~~~l~idGk~~~l~sG~--iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~--G~~dL~~fl 101 (523)
.|... .+.|.|.|++++.|= +| +++.-.+.-+++|++|+.+++.|.|=+-.. -+.|. |...+..+-
T Consensus 15 ~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~ 84 (266)
T PRK13398 15 IVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILK 84 (266)
T ss_pred EEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHH
Confidence 35443 377777788888874 33 567778889999999999999998763333 34666 567899999
Q ss_pred HHHHHcCCEEEEec
Q 009890 102 KLVAEAGLYAHLRI 115 (523)
Q Consensus 102 ~la~~~GL~Vilr~ 115 (523)
+.|++.||.++-.|
T Consensus 85 ~~~~~~Gl~~~te~ 98 (266)
T PRK13398 85 EVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999988765
No 99
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=73.63 E-value=12 Score=38.71 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=67.7
Q ss_pred EEEEEEeeCCCCCccc-hHH---HHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 42 VLISGSIHYPRSTPEM-WPD---LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 42 ~l~sG~iHy~R~~~~~-W~d---~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
+-+++..|+...+... ... .|++--++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+=+.+|.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 5677778776543222 222 333333599999888543 3433 6889999999997665444444
Q ss_pred eec---------cccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 118 YVC---------AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 118 yi~---------aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
..+ +||..--+|.|+.+.=. ....+++...+.--++..++++.+++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 57887788999975100 12233455566666777778777774
No 100
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=73.53 E-value=5.9 Score=44.22 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=83.3
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCC-C--ceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPV-R--NQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~--G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (523)
.+.++++.||++|++.-|.-+-|...=|. + +.-+-.|..--..+|+...++|+..++-. -.=.+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 57899999999999999999999988775 2 56788888888889999999999877655 2345788887
Q ss_pred C-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecc
Q 009890 134 F-IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (523)
Q Consensus 134 ~-~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~Q 179 (523)
+ ..|-.-+..=+.|+++++--+++..+++| ....=|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 5 44432233335688888888888888888 33333455554444
No 101
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=72.69 E-value=64 Score=32.18 Aligned_cols=91 Identities=12% Similarity=0.166 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCcee-eccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCC
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQY-NFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPG 137 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~y-dF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~ 137 (523)
.+.|+++.+.|++.|+... .+|..-.- +++ ..++.++.++++++||.+.+- +||.
T Consensus 13 ~~~~~~~~~~G~~~vel~~----~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~------------------ 68 (273)
T smart00518 13 YKAFIEAVDIGARSFQLFL----GNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL------------------ 68 (273)
T ss_pred hHHHHHHHHcCCCEEEEEC----CCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce------------------
Confidence 4789999999999999943 34422100 122 236889999999999986542 3432
Q ss_pred eeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecc
Q 009890 138 IQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ 179 (523)
Q Consensus 138 i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~Q 179 (523)
+.+.+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 69 ~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345567777777777888777776 33 45555543
No 102
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=72.53 E-value=12 Score=29.35 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=43.8
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
.|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 11 ~pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 11 KPGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CCChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 35566788999999999999999732 333 58877765 5778999999999988754
No 103
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=72.21 E-value=1.9 Score=42.89 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
-...+++.+.|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999996655444333333 8999999999999999998
No 104
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=71.38 E-value=6.6 Score=40.98 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=52.2
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCCCc--eeeccCc--chHHHHHHHHHHcCCEEEEecCceec
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRN--QYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G--~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~ 120 (523)
+|..|. +.+.-.+.++++++.||.+=.+.+-|.+.. ..| .|+|.-. -|..++++..++.|++|++.+=|+|+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 444554 566678899999999887655555555443 244 7766643 38999999999999999998877663
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=70.83 E-value=9 Score=43.24 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=40.2
Q ss_pred hHHHHHHHHhCCCCEEEE-ccccCcCCCCC-cee----------eccCcchHHHHHHHHHHcCCEEEEec
Q 009890 58 WPDLIQKSKDGGLDVIET-YVFWNLHEPVR-NQY----------NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~t-YvfWn~HEp~~-G~y----------dF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.+.|.-+|++|+++|-+ .++-. |.. .-| +|....||.++++.|+++||+||+-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457788899999999987 45421 211 122 24456789999999999999999864
No 106
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.59 E-value=6.4 Score=44.11 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=40.5
Q ss_pred cchHHHHHHHHhCCCCEEEE-ccccCcCCCC-Ccee----------eccCcchHHHHHHHHHHcCCEEEEe
Q 009890 56 EMWPDLIQKSKDGGLDVIET-YVFWNLHEPV-RNQY----------NFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~t-YvfWn~HEp~-~G~y----------dF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
.-+.+.|.-+|++|+|+|-+ .+|=+ +. ...| .|.+..|+.++++.|++.||+|||-
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34667888899999999986 34311 11 1112 2455679999999999999999985
No 107
>PRK09505 malS alpha-amylase; Reviewed
Probab=70.27 E-value=9 Score=44.44 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=41.6
Q ss_pred hHHHHHHHHhCCCCEEEE-ccccCcCCCC----Cc------------------eeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 58 WPDLIQKSKDGGLDVIET-YVFWNLHEPV----RN------------------QYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~t-YvfWn~HEp~----~G------------------~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....++..+++.|+++||+||+-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456677889999999985 4554433211 11 113555679999999999999999988
Q ss_pred c
Q 009890 115 I 115 (523)
Q Consensus 115 ~ 115 (523)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 6
No 108
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=69.02 E-value=9 Score=43.89 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=41.2
Q ss_pred CccchHHHHHHHHhCCCCEEEE-cc-------ccCcC-----CCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 54 TPEMWPDLIQKSKDGGLDVIET-YV-------FWNLH-----EPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~t-Yv-------fWn~H-----Ep~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
..+.=.+.|.-+|++|+++|+. .| -|.+- -|.. .|..-.||.+||+.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3344467888899999999996 23 15421 1111 2334469999999999999999986
No 109
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=68.58 E-value=11 Score=34.61 Aligned_cols=53 Identities=26% Similarity=0.434 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHcCCEEEEecCceeccccC-CCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcc
Q 009890 95 YDLVKFVKLVAEAGLYAHLRIGPYVCAEWN-FGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEK 166 (523)
Q Consensus 95 ~dL~~fl~la~~~GL~Vilr~GPyi~aEw~-~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~ 166 (523)
.||.-||++|++.|+.|++-+-| |++.|. +-|+| ++.-+.++++|-.++++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~~g 89 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKSQG 89 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHHCC
Confidence 39999999999999999877755 566652 22222 2455788999999998543
No 110
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=68.34 E-value=10 Score=38.42 Aligned_cols=53 Identities=8% Similarity=0.264 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
....++-++.+|+.||++|++ ..|..+++ ..+..++|+.++++||.|.-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 356778888999999999998 34555554 347889999999999999988874
No 111
>PF10435 BetaGal_dom2: Beta-galactosidase, domain 2; InterPro: IPR018954 This is the second domain of the five-domain beta-galactosidase enzyme that altogether catalyses the hydrolysis of beta(1-3) and beta(1-4) galactosyl bonds in oligosaccharides as well as the inverse reaction of enzymatic condensation and trans-glycosylation. This domain is made up of 16 antiparallel beta-strands and an alpha-helix at its C terminus. The fold of this domain appears to be unique. In addition, the last seven strands of the domain form a subdomain with an immunoglobulin-like (I-type Ig) fold in which the first strand is divided between the two beta-sheets. In penicillin spp this strand is interrupted by a 12-residue insertion which forms an additional edge-strand to the second beta-sheet of the sub-domain. The remainder of the second domain forms a series of beta-hairpins at its N terminus, four strands of which are contiguous with part of the Ig-like sub-domain, forming in total a seven-stranded antiparallel beta-sheet. This domain is associated with IPR001944 from INTERPRO, which is N-terminal to it, but itself has no metazoan members. ; GO: 0004565 beta-galactosidase activity; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A.
Probab=68.03 E-value=31 Score=33.51 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=35.5
Q ss_pred CCCCceEEEEE--c-CCCceEEEEEeCCCC----e--eEEEEECCeEEEecC---------eeEEEcC-----CCCeEEe
Q 009890 356 LGPNLEATVYK--T-GSGLCSAFLANIGTN----S--DVTVKFNGNSYLLPA---------WSVSILP-----DCKNVVF 412 (523)
Q Consensus 356 lg~~~~~~v~~--~-~~~~~~~Fl~N~~~~----~--~~~V~f~~~~~~lp~---------~svsIlp-----~~~~v~~ 412 (523)
..++....++. + +.++.|-++.+.+.. . .++|....++++||. +.--|++ +..+++|
T Consensus 14 ~t~~~~i~vt~l~np~t~a~Fyvvrh~~~~s~~~~~f~l~v~Ts~G~~tiPq~~g~ltL~GrdSKIlvtDy~~G~~~LlY 93 (183)
T PF10435_consen 14 YTSNSAIFVTHLRNPDTGAGFYVVRHNDSTSTASTSFTLNVNTSDGTLTIPQLGGSLTLNGRDSKILVTDYDFGGHTLLY 93 (183)
T ss_dssp SCS-TTEEEEEEE-STTS-EEEEEEESSTT--S-EEE-EEEEETTEEEEE-TTSS-EEE-TT-EEEEEEEEEETTEEEEE
T ss_pred ecCCCCEEEEEeeCCCCCcEEEEEEccCCCCCCceEEEEEeecCCeeEEecccCCcEEECCcceeEEEeecccCCcEEEE
Confidence 33455666664 3 344566666554432 2 234555588888885 2223444 5789999
Q ss_pred ecceecC
Q 009890 413 NTAKINS 419 (523)
Q Consensus 413 ~Ta~v~~ 419 (523)
.||+|-+
T Consensus 94 STAeilT 100 (183)
T PF10435_consen 94 STAEILT 100 (183)
T ss_dssp ESSEEEE
T ss_pred echheEE
Confidence 9999953
No 112
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=66.74 E-value=21 Score=37.79 Aligned_cols=119 Identities=20% Similarity=0.316 Sum_probs=76.0
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE-ecCceeccccCCCCCCccc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL-RIGPYVCAEWNFGGFPLWL 132 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil-r~GPyi~aEw~~GG~P~WL 132 (523)
....|+..-.-.+.+|+.+|.+|-+|+.-+. ..|++.||.-.+.+--+.|. -. .||-=..
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k---------~~d~e~~Lsdl~~APe~si~iLh---aCAhNPT------- 191 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENK---------CVDLEGFLSDLESAPEGSIIILH---ACAHNPT------- 191 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCc---------eecHHHHHHHHhhCCCCcEEeee---ccccCCC-------
Confidence 4567999999999999999999999997552 23788999888877666432 22 1432111
Q ss_pred cCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHhcCCC
Q 009890 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTG 212 (523)
Q Consensus 133 ~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~ 212 (523)
|| +-.+.-+.+|++.||+..|+.-= =|+.| |.- .|.. +-=.|+.+..++.|
T Consensus 192 ----Gm----------DPT~EQW~qia~vik~k~lf~fF---DiAYQ-----GfA---SGD~--~~DawAiR~fV~~g-- 242 (410)
T KOG1412|consen 192 ----GM----------DPTREQWKQIADVIKSKNLFPFF---DIAYQ-----GFA---SGDL--DADAWAIRYFVEQG-- 242 (410)
T ss_pred ----CC----------CCCHHHHHHHHHHHHhcCceeee---ehhhc-----ccc---cCCc--cccHHHHHHHHhcC--
Confidence 22 22344467788888877665210 14555 332 2322 22368888888888
Q ss_pred cceEEccC
Q 009890 213 VPWVMCQQ 220 (523)
Q Consensus 213 vP~~~~~~ 220 (523)
.+++.|+.
T Consensus 243 ~e~fv~QS 250 (410)
T KOG1412|consen 243 FELFVCQS 250 (410)
T ss_pred CeEEEEhh
Confidence 56788864
No 113
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=66.49 E-value=30 Score=36.63 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=55.6
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc--chHHHHHHHHHHcCCEEEEecCceec
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~ 120 (523)
+|..|+ +.+...+.++++++.+|-+=.+++-|.+++ .-+.|.|... -|..++++..++.|+++++.+=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 566664 677788999999999987655555555554 3466766543 37899999999999999999999998
No 114
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=65.99 E-value=18 Score=38.35 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=11.9
Q ss_pred hHHHHHHHHhCCCCEE
Q 009890 58 WPDLIQKSKDGGLDVI 73 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V 73 (523)
-+..|+++++.|+.+|
T Consensus 49 lD~~l~~a~~~Gi~vi 64 (374)
T PF02449_consen 49 LDRVLDLAAKHGIKVI 64 (374)
T ss_dssp HHHHHHHHHCTT-EEE
T ss_pred HHHHHHHHHhccCeEE
Confidence 4667888888888877
No 115
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=65.69 E-value=9 Score=46.48 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=34.3
Q ss_pred eeEEEeEEEecCCCccccCCC-eeEEEEeecCcEEEEEEcCeeeec
Q 009890 478 YLWYSLSTNIKADEPLLEDGS-KTVLHVQSLGHALHAFINGKLVGE 522 (523)
Q Consensus 478 YLWY~T~v~i~~~~~~~~~~~-~~~L~v~s~gh~lh~FVNg~~~G~ 522 (523)
-.||.++|++.++- .++ +..|+.+.......|||||+++|.
T Consensus 121 ~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~ 162 (1027)
T PRK09525 121 TGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGY 162 (1027)
T ss_pred eEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEe
Confidence 46999999997542 123 679999999999999999999995
No 116
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=65.26 E-value=76 Score=33.78 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEe
Q 009890 98 VKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIIL 177 (523)
Q Consensus 98 ~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~ 177 (523)
..++..|+++|+.|++- |++|. +. + .|+ +.-++|++.+++.++++++ =+
T Consensus 67 ~~~~~~A~~~~v~v~~~-----------~~~~~-----~~--l--~~~---~~R~~fi~siv~~~~~~gf--------DG 115 (358)
T cd02875 67 DELLCYAHSKGVRLVLK-----------GDVPL-----EQ--I--SNP---TYRTQWIQQKVELAKSQFM--------DG 115 (358)
T ss_pred HHHHHHHHHcCCEEEEE-----------CccCH-----HH--c--CCH---HHHHHHHHHHHHHHHHhCC--------Ce
Confidence 68899999999999863 23331 11 1 233 3346799999999998764 14
Q ss_pred cccccccc
Q 009890 178 SQIENEYG 185 (523)
Q Consensus 178 ~QIENEyg 185 (523)
+.|+=||-
T Consensus 116 IdIDwE~p 123 (358)
T cd02875 116 INIDIEQP 123 (358)
T ss_pred EEEcccCC
Confidence 55666653
No 117
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=65.05 E-value=27 Score=34.98 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=55.3
Q ss_pred Cceeecc-CcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 86 RNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 86 ~G~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
.|...+. +..++..+++.|++.|++|++.+|= |..+. ... + + .++ +..++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~~----~-~--~~~---~~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FTA----A-L--NDP---AKRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---chh----h-h--cCH---HHHHHHHHHHHHHHHH
Confidence 4555554 3357889999999999999999871 11111 100 0 1 222 2346789999999997
Q ss_pred cccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHhcC
Q 009890 165 EKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLD 210 (523)
Q Consensus 165 ~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g 210 (523)
+++ =++.|+=|+.... ...-..+++.|++...+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 764 2355666664321 1122344555555554444
No 118
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=64.64 E-value=11 Score=39.55 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=54.1
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc--chHHHHHHHHHHcCCEEEEecCceeccc
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~aE 122 (523)
+|..|. +.++-.+.++++++.||.+=.+.+-+.+. ...+.|+|.-. -|..++++..++.|++|++.+=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 455554 56667889999999998765555443322 34456766543 3899999999999999999999999854
No 119
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=64.28 E-value=39 Score=39.25 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=67.7
Q ss_pred cchHHHHHHHHhCCCCEEE---------------EccccCcCCCCCceeeccCcchHHH-HHHHHHHcCCEEEEecCcee
Q 009890 56 EMWPDLIQKSKDGGLDVIE---------------TYVFWNLHEPVRNQYNFEGRYDLVK-FVKLVAEAGLYAHLRIGPYV 119 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~---------------tYvfWn~HEp~~G~ydF~G~~dL~~-fl~la~~~GL~Vilr~GPyi 119 (523)
+.-...|+.+|+.|+|+|= .|++| -|=| |+-|. +++ ...++.+.|+.|..+..||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~-----f~~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADL-----FNRVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCC-----cCHHHHHHHHhhCCEEEEecccee
Confidence 4577899999999999985 46667 3333 33331 222 34568899999999999985
Q ss_pred cc---------ccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccc
Q 009890 120 CA---------EWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE 183 (523)
Q Consensus 120 ~a---------Ew~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENE 183 (523)
-. +++..+-|.-.+ |+--.| -.+|..++++|++.|.+-++++ .+|=++|..-+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 31 222222222221 110122 2467789999999999998864 24555555444
No 120
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.25 E-value=13 Score=38.89 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=49.5
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCC-----CCceeeccCc--chHHHHHHHHHHcCCEEEEecCceecc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-----VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-----~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
+.+...+.++++|+.||-+=.+.+-+.++.. .-|.|+|.-. -|..++++..++.|++|++.+=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccC
Confidence 4666789999999999875555544333331 2356666533 389999999999999999998888763
No 121
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=64.05 E-value=99 Score=31.23 Aligned_cols=71 Identities=10% Similarity=0.196 Sum_probs=52.4
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCCCcee--eccC--cchHHHHHHHHHHcCCEEEEecCcee
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQY--NFEG--RYDLVKFVKLVAEAGLYAHLRIGPYV 119 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~y--dF~G--~~dL~~fl~la~~~GL~Vilr~GPyi 119 (523)
+|..|. +.++..+.++++++.||.+=.+.+-+.+.+. .+.+ +|.- --|..++++..++.|++|++.+=|+|
T Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 13 YWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 344444 6777889999999999886666655554443 3555 4442 24899999999999999999998877
No 122
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=63.51 E-value=11 Score=46.53 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCCEEEE-ccccCcCCCC---Cce-----ee----------cc--CcchHHHHHHHHHHcCCEEEEec
Q 009890 60 DLIQKSKDGGLDVIET-YVFWNLHEPV---RNQ-----YN----------FE--GRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~t-YvfWn~HEp~---~G~-----yd----------F~--G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.|.-+|++|+|+|++ .|+=...|.. .|. || |. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999997 4552222211 110 22 23 56789999999999999999984
No 123
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=61.61 E-value=14 Score=38.66 Aligned_cols=73 Identities=7% Similarity=0.110 Sum_probs=53.2
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc--chHHHHHHHHHHcCCEEEEecCceecc
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
+|..|. +.+..++.++++++.+|-+=.+.+-+.+.. ..+.|+|... -|..+|++..++.|++|++.+=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 455554 566778999999999987555544432222 3456666543 489999999999999999999898864
No 124
>PLN02361 alpha-amylase
Probab=60.85 E-value=20 Score=39.02 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCCEEEEccccC---cCCCCCce-e----eccCcchHHHHHHHHHHcCCEEEEec
Q 009890 60 DLIQKSKDGGLDVIETYVFWN---LHEPVRNQ-Y----NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~tYvfWn---~HEp~~G~-y----dF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.|.-+|++|+++|-+.=+.. .|--.+.. | .|....+|.++++.|++.||.||+-.
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 445667999999998753221 12112222 1 24556789999999999999999864
No 125
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=60.76 E-value=20 Score=38.10 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=55.7
Q ss_pred EEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCce-eeccCcchHHHHHHHHHHcCCEEEEecCceeccc
Q 009890 44 ISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ-YNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (523)
Q Consensus 44 ~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~-ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aE 122 (523)
++=++.+.|.+.+.=...|++|...|+..|=| ++|.|.+.. -.|. -+.++++.|++.||+||+-+-|-|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 34567777888887788999999999988877 567776631 1222 578889999999999999998866555
No 126
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.57 E-value=44 Score=31.14 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=63.0
Q ss_pred cchHHHHHHHHhCCCCEEEEccc--cCcCCC----CCceeeccCcchHHHHHHHHHHcCCEEE-EecCceeccccCCCCC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVF--WNLHEP----VRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCAEWNFGGF 128 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvf--Wn~HEp----~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~ 128 (523)
+.-++..+.+++.|+.++....+ |..... .+.+ .-.....+.+.+++|++.|...+ +.+|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 34567778889999997775544 433211 1111 11123478999999999998865 54442 0
Q ss_pred CccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccccccc
Q 009890 129 PLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNI 187 (523)
Q Consensus 129 P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~ 187 (523)
+.+ + ....+.-++.+.+.+++++++.++++ |-+.+||..+..
T Consensus 96 ~~~----~----~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 96 PSG----P----EDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp SSS----T----TSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred ccc----c----CCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 000 0 11233566777888899999988653 345688887754
No 127
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.41 E-value=46 Score=31.10 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=52.3
Q ss_pred CcchhhHHHHHHHHHHHHHhhcCCeeEEEecceEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccC
Q 009890 1 MASKEILLLVLCWGFVVLATTSFGANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWN 80 (523)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~vt~d~~~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn 80 (523)
|.+++.++.++++++++.++.+.+ -+|.. .-||.+.. -.++.+.+.+-.+|+|-.+|-
T Consensus 1 m~~~r~ll~~fL~l~~~slaqa~~-ilTiq----~ad~~~~~-----------------ft~qeLeal~~~T~ete~Pw~ 58 (155)
T COG3915 1 MRTMRVLLLTFLALISSSLAQAEP-ILTIQ----IADGPTVS-----------------FTLQELEALPDETIETETPWT 58 (155)
T ss_pred CchHHHHHHHHHHHHhhHHhhcCc-eEEEE----ecCCCcee-----------------ecHHHHhcCCcceEEEecCcc
Confidence 777777776666666554443322 23433 22333321 135667789999999999995
Q ss_pred cCCCCCceeeccCcc--hHHHHHHHHHHcCCEEEE
Q 009890 81 LHEPVRNQYNFEGRY--DLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 81 ~HEp~~G~ydF~G~~--dL~~fl~la~~~GL~Vil 113 (523)
+|.-.|.|.+ +|-+.+. ++...+.|+.
T Consensus 59 -----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 59 -----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred -----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 4677888863 5666666 5666666664
No 128
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=60.36 E-value=20 Score=42.41 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=45.0
Q ss_pred CccchHHHHHHHHhCCCCEEEEc-cccC----cCCCC-----CceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETY-VFWN----LHEPV-----RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tY-vfWn----~HEp~-----~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
+-+-+.+.|.-++++|+++|-+- +|=+ .|--. .=.-.|.+..++.+|++.|+++||.||+-+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44568899999999999999763 4311 01100 00123557889999999999999999988644
No 129
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=59.15 E-value=21 Score=37.21 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCC---CCceeeccCc--chHHHHHHHHHHcCCEEEEecCceec
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP---VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVC 120 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp---~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~ 120 (523)
.+.-.+.++++++.||.+=.+.+-+.+..- ..+.|+|.-. -|..++++..++.|++|++.+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 346678899999999876655554332221 1234666432 48999999999999999999888775
No 130
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=58.97 E-value=17 Score=38.65 Aligned_cols=114 Identities=18% Similarity=0.315 Sum_probs=68.0
Q ss_pred EEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHH
Q 009890 72 VIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEM 151 (523)
Q Consensus 72 ~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~ 151 (523)
.|.+.|.|+++--+. -=...++.|+++|+.|+--+ .-||+ +-+.|+.. + +. +++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~-~~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LK-KDE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hc-cCc---ccc
Confidence 477788888754321 11456899999999997433 33665 34456653 1 22 111 224
Q ss_pred HHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHhcC--CCcceE
Q 009890 152 QRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLD--TGVPWV 216 (523)
Q Consensus 152 ~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g--~~vP~~ 216 (523)
.++.++|+++++.+++ +| +++-+|+..+... ..+.-..+++.|++.+++.+ ..|-|+
T Consensus 89 ~~~a~kLv~lak~yGf---DG---w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 89 FPVADKLVEVAKYYGF---DG---WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred hHHHHHHHHHHHHhCC---Cc---eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 6788999999997764 23 6777788763111 11244567777777777643 334455
No 131
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=58.90 E-value=52 Score=38.31 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=36.1
Q ss_pred HHHHHhCCCCEEEE-ccccCcCCC---CCc-----eee----------c---cCcchHHHHHHHHHHcCCEEEEec
Q 009890 62 IQKSKDGGLDVIET-YVFWNLHEP---VRN-----QYN----------F---EGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 62 l~k~Ka~GlN~V~t-YvfWn~HEp---~~G-----~yd----------F---~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
|.-+|++|+|+|.. .||=...++ ..| -|| | ....++.++++.|+++||.|||-.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 67789999999996 454111111 111 011 1 124589999999999999999985
No 132
>PRK09875 putative hydrolase; Provisional
Probab=58.18 E-value=65 Score=33.53 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=56.7
Q ss_pred eEEEecceEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHH
Q 009890 26 NVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA 105 (523)
Q Consensus 26 ~vt~d~~~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~ 105 (523)
.+|+-+..+.++..+. .+......-..+.=...|+.+|+.|.++|= |..+ ..-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~---~~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGF---KNNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhh---cCCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHH
Confidence 3566677777765321 111111111334445678889999998772 2222 112479999999999
Q ss_pred HcCCEEEEecCceeccccCCCCCCccccC
Q 009890 106 EAGLYAHLRIGPYVCAEWNFGGFPLWLHF 134 (523)
Q Consensus 106 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 134 (523)
+-|+.||...|-|.... +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885432 5777763
No 133
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=58.13 E-value=20 Score=36.47 Aligned_cols=49 Identities=27% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
..++|++|++.|-+ .|..++-.|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999998 788777666533 23344444559999999999997
No 134
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=57.92 E-value=17 Score=39.26 Aligned_cols=70 Identities=10% Similarity=0.263 Sum_probs=47.9
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc--chHHHHHHHHHHcCCEEEEecCceeccccC
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 124 (523)
+.+...+.++.+|+.|+-+=...+-..+.. ..+.|.|... -|+.++++.+++.|+++++..-|+|+-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 466678999999999987666655433333 3445555432 389999999999999999999999986644
No 135
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=57.75 E-value=22 Score=37.29 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=41.7
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccC---cCCCCCcee--------eccCcchHHHHHHHHHHcCCEEEEec
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWN---LHEPVRNQY--------NFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn---~HEp~~G~y--------dF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+..-.++++.+|..|+|++-+-+-=. +.=|....+ .| .|+..||+-|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 456678899999999999987644211 111111111 23 389999999999999999997
No 136
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=56.52 E-value=23 Score=45.01 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=46.0
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCce---e----------eccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ---Y----------NFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~---y----------dF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
+-+-|.+.|.-+|++|+|+|-+-=++ +..+|. | .|.+..++.+|++.|+++||.||+-+=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 56679999999999999999864222 212221 2 2567789999999999999999987644
No 137
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=56.49 E-value=21 Score=42.76 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 009890 95 YDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 95 ~dL~~fl~la~~~GL~Vilr~ 115 (523)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999874
No 138
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=56.36 E-value=21 Score=37.54 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=52.4
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc--chHHHHHHHHHHcCCEEEEecCceecc
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
+|..|. +.+...+.++++++.||-+=.+.+-+.+.. .-+.|+|.-. -|..++++..++.|+++++.+=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455554 566678999999999987544444433332 3445666532 378999999999999999998888874
No 139
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=56.29 E-value=26 Score=41.77 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred CccchHHHHHHHHhCCCCEEEEc-cccCcCCCCCce---e----------eccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETY-VFWNLHEPVRNQ---Y----------NFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tY-vfWn~HEp~~G~---y----------dF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
+-+-+.+.|.-++++|+|+|-+- ++ +..+|. | .|.+..++.+|++.|+++||.||+-+=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45668899999999999999863 32 111221 1 2456789999999999999999988644
No 140
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=55.90 E-value=1e+02 Score=32.64 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 009890 150 EMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 186 (523)
Q Consensus 150 ~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~ 186 (523)
.-++|++..++.+++++ .+-++|.+---||.+.
T Consensus 295 ~F~~~l~~a~~~~~~~~----~~~~~vfInAWNEW~E 327 (345)
T PF14307_consen 295 LFKKWLREAIRRVKENP----GDERIVFINAWNEWAE 327 (345)
T ss_pred HHHHHHHHHHHHHHhCC----CCCCEEEEEeccccCC
Confidence 34566666666666442 4679999999999974
No 141
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=54.61 E-value=26 Score=35.42 Aligned_cols=49 Identities=31% Similarity=0.321 Sum_probs=40.3
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
..++|++|++.|-+ .|..++--|.-+ +.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 45789999999998 777777555543 56788889999999999999997
No 142
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=54.29 E-value=66 Score=33.39 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=80.8
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCcccc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLH 133 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 133 (523)
.-+.-+.+|+.+|.-+. .||+|- . .-.-|+.++.++.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--s------------DCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--S------------DCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--c------------cchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45667889999999887 999985 1 11258888999999999999988 655
Q ss_pred CCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHhcCCCc
Q 009890 134 FIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (523)
Q Consensus 134 ~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~v 213 (523)
. ++ . ..+++ .|..++. + +..--.|-.+-|.||-=+....-...--+|+...|...+++|.++
T Consensus 111 d--d~-------~--~~~~~---til~ay~--~--~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYL--P--YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHh--c--cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 22 1 11221 2333333 1 111236788889999643222111234689999999999999999
Q ss_pred ceEEccCC
Q 009890 214 PWVMCQQS 221 (523)
Q Consensus 214 P~~~~~~~ 221 (523)
|+.+.++.
T Consensus 173 pV~T~dsw 180 (305)
T COG5309 173 PVTTVDSW 180 (305)
T ss_pred ceeecccc
Confidence 99888764
No 143
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=53.55 E-value=6.7 Score=44.76 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=26.7
Q ss_pred ccccccCCCCCCcCCCCCChhHHHHHHHH
Q 009890 308 ISTSYDYDAPLDEYGLIRQPKWGHLKDLH 336 (523)
Q Consensus 308 ~~TSYDy~Api~E~G~~~~pKy~~lk~lh 336 (523)
..|||||+||+-|.|+++++||+++++-.
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~~~C 353 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLREAC 353 (649)
T ss_pred chhhhhhcCccccccCcccccccchhhHH
Confidence 78999999999999998899999999653
No 144
>PRK03705 glycogen debranching enzyme; Provisional
Probab=53.49 E-value=23 Score=40.99 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCEEEE-ccccCcCCCCC---c-----eee----------ccCc-----chHHHHHHHHHHcCCEEEEec
Q 009890 61 LIQKSKDGGLDVIET-YVFWNLHEPVR---N-----QYN----------FEGR-----YDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 61 ~l~k~Ka~GlN~V~t-YvfWn~HEp~~---G-----~yd----------F~G~-----~dL~~fl~la~~~GL~Vilr~ 115 (523)
.|.-+|++|+|+|.+ .|+=...++.. | -|| |... .++.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999996 45321111110 1 011 2221 479999999999999999874
No 145
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=53.45 E-value=54 Score=34.53 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=71.4
Q ss_pred HHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCee
Q 009890 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQ 139 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~ 139 (523)
.++...++.|.++|=. +.+ =.=.||..+..+++++-||.+|...|+|.-+.|+ .|+...|
T Consensus 52 ~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVD--------ATN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEee--------CCc----cccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC---
Confidence 3455666678877643 111 0012699999999999999999999999988875 5776433
Q ss_pred eecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHhcCCCcceEEcc
Q 009890 140 FRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ 219 (523)
Q Consensus 140 ~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~ 219 (523)
++.+...+++.+++ ++ .|+=|-.-|=-|-|.... ..+.-..-++..++..+ .+++|+.+-.
T Consensus 112 -----------i~~~ae~~v~ei~~-Gi----~gT~ikAGiIk~~~~~~~-iTp~Eek~lrAaA~A~~--~Tg~Pi~tHt 172 (316)
T COG1735 112 -----------IEELAEFVVKEIEE-GI----AGTGIKAGIIKEAGGSPA-ITPLEEKSLRAAARAHK--ETGAPISTHT 172 (316)
T ss_pred -----------HHHHHHHHHHHHHh-cc----cCCccccceeeeccCccc-CCHHHHHHHHHHHHHhh--hcCCCeEEec
Confidence 45555666666662 22 233333333345454322 22222333333333333 4689988765
Q ss_pred C
Q 009890 220 Q 220 (523)
Q Consensus 220 ~ 220 (523)
+
T Consensus 173 ~ 173 (316)
T COG1735 173 P 173 (316)
T ss_pred c
Confidence 4
No 146
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=52.86 E-value=85 Score=32.83 Aligned_cols=144 Identities=10% Similarity=0.134 Sum_probs=79.0
Q ss_pred CccchHHHHHHHHhCCCCEEEEccc--cCcC---CC------------------------CCceeeccCcchHHHHHHHH
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVF--WNLH---EP------------------------VRNQYNFEGRYDLVKFVKLV 104 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvf--Wn~H---Ep------------------------~~G~ydF~G~~dL~~fl~la 104 (523)
+.+...+.|+.|...++|++...+- |.+- .| ..|.|. ..|+..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6888899999999999999997542 2221 11 112222 34999999999
Q ss_pred HHcCCEEEEecCceeccccCCCCCCccccCCCCeeeec---------CChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 009890 105 AEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRT---------DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPI 175 (523)
Q Consensus 105 ~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt---------~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpI 175 (523)
++.|+.||..+----|++ +|+...|.+..+. -| +-.+.+-+|++.|++.+. .+|-. .++.
T Consensus 92 ~~rgI~vIPEID~PGH~~-------a~~~~~pel~~~~~~~~~~~~~l~-~~~~~t~~f~~~l~~E~~--~~f~~-~~~~ 160 (326)
T cd06564 92 KDRGVNIIPEIDSPGHSL-------AFTKAMPELGLKNPFSKYDKDTLD-ISNPEAVKFVKALFDEYL--DGFNP-KSDT 160 (326)
T ss_pred HHcCCeEeccCCCcHHHH-------HHHHhhHHhcCCCcccCCCccccc-CCCHHHHHHHHHHHHHHH--HhcCC-CCCE
Confidence 999999997653222322 2333323211110 01 122445556666666665 34321 2333
Q ss_pred EeccccccccccccccCcccHHHHHHHHHHHHhcCCCc
Q 009890 176 ILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (523)
Q Consensus 176 I~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~v 213 (523)
|=+- .-|+-... ...+.-..|++.+.+.+++.|..+
T Consensus 161 ~HiG-gDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~~ 196 (326)
T cd06564 161 VHIG-ADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKTP 196 (326)
T ss_pred EEec-cccccccC-ccHHHHHHHHHHHHHHHHHcCCeE
Confidence 3222 11221100 011223578888888888887653
No 147
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=52.09 E-value=38 Score=36.00 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=58.5
Q ss_pred EEEecceEEECCEEEEEEEEEeeCCCC-CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccC--cchHHHHHHH
Q 009890 27 VTYDHRAVVIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG--RYDLVKFVKL 103 (523)
Q Consensus 27 vt~d~~~l~idGk~~~l~sG~iHy~R~-~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G--~~dL~~fl~l 103 (523)
|... .+.|.|.+++++.| +--+ +++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.+.
T Consensus 82 v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~ 152 (335)
T PRK08673 82 VKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEA 152 (335)
T ss_pred EEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHH
Confidence 4453 36777888888888 1122 56666677888889999999999985 4434477876 4567777888
Q ss_pred HHHcCCEEEEec
Q 009890 104 VAEAGLYAHLRI 115 (523)
Q Consensus 104 a~~~GL~Vilr~ 115 (523)
|++.||.++-.+
T Consensus 153 ~~~~Gl~v~tev 164 (335)
T PRK08673 153 REETGLPIVTEV 164 (335)
T ss_pred HHHcCCcEEEee
Confidence 999999988765
No 148
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.35 E-value=79 Score=32.81 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=48.1
Q ss_pred CccchHHHHHHHHhCCCCEEEEcc----ccCcCCC-C--CceeeccCcchHHHHHHHHHHcCCEEEEecCceecccc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYV----FWNLHEP-V--RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEW 123 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYv----fWn~HEp-~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw 123 (523)
+.+.-.+.|+.|...|+|.+..|+ .+..+.. . +|.|. ..++..+++.|++.|+.||..+--.-|.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 456778999999999999999875 2332211 1 23333 248999999999999999987654445554
No 149
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=51.02 E-value=58 Score=25.49 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=33.6
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
..++.++++|+.|++.|-+= -|. ++. ...+|.+++++.||.++..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 46789999999999999762 222 122 3578889999999988754
No 150
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=50.37 E-value=38 Score=35.27 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=59.1
Q ss_pred HHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcC--CEEEEecCceec-------cccCCCCCCcc
Q 009890 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAG--LYAHLRIGPYVC-------AEWNFGGFPLW 131 (523)
Q Consensus 61 ~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P~W 131 (523)
.|++-.++|.+.+-|=.| ||.+ .+.+|++.|++.| +.|++.+-|-.. ++...-++|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 344445688888887443 4444 7899999999999 556776666332 67788889999
Q ss_pred ccCC-CCeeeecCC-hhHHHHHHHHHHHHHHHHHhc
Q 009890 132 LHFI-PGIQFRTDN-EPFKAEMQRFTAKIVDMMKQE 165 (523)
Q Consensus 132 L~~~-p~i~~Rt~d-~~fl~~~~~~~~~i~~~ik~~ 165 (523)
+.+. .. .. ++ +..+++--++..++++.+.++
T Consensus 235 l~~~l~~--~~-d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 235 MAKMFDG--LD-DDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred HHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHHHHC
Confidence 9752 11 21 33 335556667777777777744
No 151
>PLN02877 alpha-amylase/limit dextrinase
Probab=49.33 E-value=33 Score=41.40 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 009890 95 YDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 95 ~dL~~fl~la~~~GL~Vilr~ 115 (523)
+++.++++.|+++||.||+-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999874
No 152
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=48.32 E-value=31 Score=35.05 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCEEEEccccC---cCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 59 PDLIQKSKDGGLDVIETYVFWN---LHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn---~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
++.++++|++|++.|...+- . .++...+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 67899999999999888654 1 111111223443 5667789999999987543
No 153
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=48.21 E-value=31 Score=42.25 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 009890 95 YDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 95 ~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 579999999999999999985
No 154
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=48.11 E-value=56 Score=37.44 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=73.4
Q ss_pred CEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 38 GKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 38 Gk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
+++-+.+++..|+.+.+.+.=-++|++-.++|.+.+-|=.+++. + .+.+|++.|++.++.+|..+-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeee
Confidence 34557888888866554433334455556789999999665442 2 6888998898888889988887
Q ss_pred eecc--------ccCCCCCCccccCC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 118 YVCA--------EWNFGGFPLWLHFI-PGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 118 yi~a--------Ew~~GG~P~WL~~~-p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
.... +|..-=+|.|+.+. .. .. +.+.+++.--++..++++.++
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 4442 35556678888751 11 12 334667777777777777776
No 155
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=47.28 E-value=42 Score=27.65 Aligned_cols=69 Identities=26% Similarity=0.367 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCC--CCCceEEEE-EcCCCceEEEEEeCCCCeeEEEE--------EC------CeEEE
Q 009890 333 KDLHKAIKLCEAALVATDPTYPSL--GPNLEATVY-KTGSGLCSAFLANIGTNSDVTVK--------FN------GNSYL 395 (523)
Q Consensus 333 k~lh~~i~~~~~~L~~~~~~~~~l--g~~~~~~v~-~~~~~~~~~Fl~N~~~~~~~~V~--------f~------~~~~~ 395 (523)
|+|..+ +.-.|+|..++...... .......++ +..++..+..+.|+.+. .++|. +. +...+
T Consensus 3 r~Li~L-Rr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~-~~~~~~~~~~~~l~~s~~~~~~~~~~ 80 (89)
T PF11941_consen 3 RRLIAL-RRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE-PVTVPEGPWGEVLFSSEPARAGGAGT 80 (89)
T ss_dssp HHHHHH-HHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS--EEEETSCCEEEEEECSCSSE--EEE
T ss_pred HHHHHH-HhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC-cEEccCCCCCeEEEcCCCcccccCce
Confidence 344443 33347777765433321 011122233 33345677788898764 34443 11 11667
Q ss_pred ecCeeEEE
Q 009890 396 LPAWSVSI 403 (523)
Q Consensus 396 lp~~svsI 403 (523)
|||||+.|
T Consensus 81 L~p~~~~v 88 (89)
T PF11941_consen 81 LPPWSVVV 88 (89)
T ss_dssp E-TTEEEE
T ss_pred ECCCEEEE
Confidence 77777655
No 156
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=47.19 E-value=41 Score=33.22 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
..++|++|++.|-+ .|..++ |..+ |+.+=++.|.++||.+|+++
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 45789999999888 677666 5444 68999999999999999987
No 157
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=46.84 E-value=2.9e+02 Score=27.15 Aligned_cols=126 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEccccCc--CCCCCceeeccCcchHHHHHHHHHHcCCEEEEec------CceeccccCC-----
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNL--HEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI------GPYVCAEWNF----- 125 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~--HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~------GPyi~aEw~~----- 125 (523)
++.++.|+++|+|++.+ . || ||| |..-|.+.++..+++|+..+--- .|+.--|.+.
T Consensus 67 ~~~~~~L~~~G~d~~tl-----aNNH~-----fD~-G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ 135 (239)
T cd07381 67 PEVADALKAAGFDVVSL-----ANNHT-----LDY-GEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAF 135 (239)
T ss_pred HHHHHHHHHhCCCEEEc-----ccccc-----ccc-chHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEE
Q ss_pred -----CCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHH
Q 009890 126 -----GGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIK 200 (523)
Q Consensus 126 -----GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~ 200 (523)
...+.+............++. +.+++.++++-+. . ++ -|++.+...||.. ....+.+
T Consensus 136 ig~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~-------~p~~~~~ 197 (239)
T cd07381 136 LAYTYGTNGIPLAAGARPGGVNPLDL--ERIAADIAEAKKK-A--DI------VIVSLHWGVEYSY-------YPTPEQR 197 (239)
T ss_pred EEEECCCCCCcCcccCCccccCccCH--HHHHHHHHHHhhc-C--CE------EEEEecCcccCCC-------CCCHHHH
Q ss_pred HHHHHHHhcCCCc
Q 009890 201 WAAGMALSLDTGV 213 (523)
Q Consensus 201 ~l~~~~~~~g~~v 213 (523)
.+++.+.+.|+++
T Consensus 198 ~la~~l~~~G~D~ 210 (239)
T cd07381 198 ELARALIDAGADL 210 (239)
T ss_pred HHHHHHHHCCCCE
No 158
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=46.41 E-value=1.1e+02 Score=33.75 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=58.5
Q ss_pred eCCCC--CccchHHHHHHHHhCCCCEEEE-ccccCcCCCC----Cceeec-----cCc-----chHHHHHHHHH-HcCCE
Q 009890 49 HYPRS--TPEMWPDLIQKSKDGGLDVIET-YVFWNLHEPV----RNQYNF-----EGR-----YDLVKFVKLVA-EAGLY 110 (523)
Q Consensus 49 Hy~R~--~~~~W~d~l~k~Ka~GlN~V~t-YvfWn~HEp~----~G~ydF-----~G~-----~dL~~fl~la~-~~GL~ 110 (523)
+.+++ +-+.|++.|+.+++.|+|+|.. .+---....+ ..+..| +.. .++.++++.++ +.||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34444 5579999999999999999974 2221111111 122222 111 48999998885 79999
Q ss_pred EEEecCceeccccCCCCC-CccccCCCCeeeecCChhHHHHH
Q 009890 111 AHLRIGPYVCAEWNFGGF-PLWLHFIPGIQFRTDNEPFKAEM 151 (523)
Q Consensus 111 Vilr~GPyi~aEw~~GG~-P~WL~~~p~i~~Rt~d~~fl~~~ 151 (523)
++.-+ =||.-.. =.||.+.|..-+=-.+.|+|+.+
T Consensus 93 ~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 93 SMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred EEEEE------eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 87654 1333222 24998888764544455665543
No 159
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=46.18 E-value=2.8e+02 Score=27.21 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=37.7
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
...-+++.+++++++|++.|+..- .+.+..+ ..++..+.+++++.||.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~-~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPAD-YKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCch-hhhHHHHHHHHHHcCcEEEe
Confidence 456688999999999999999865 1111111 11389999999999999875
No 160
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.79 E-value=42 Score=35.45 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=50.0
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEcc----------ccCcCCC---------CCceeeccC---cchHHHHHH
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYV----------FWNLHEP---------VRNQYNFEG---RYDLVKFVK 102 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYv----------fWn~HEp---------~~G~ydF~G---~~dL~~fl~ 102 (523)
+|..|. +.+.-.+.++++++.||.+=-+++ .|+-..- .-+.++|.. --|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 456678899999999987555443 2332111 113344432 138999999
Q ss_pred HHHHcCCEEEEecCceec
Q 009890 103 LVAEAGLYAHLRIGPYVC 120 (523)
Q Consensus 103 la~~~GL~Vilr~GPyi~ 120 (523)
..++.|++|+|.+=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 161
>PRK14565 triosephosphate isomerase; Provisional
Probab=45.26 E-value=44 Score=33.82 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=36.5
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
.+.+|++|++.+-+ .|..++--|+=+ +..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999988 777777655533 22233334899999999999997
No 162
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=45.25 E-value=2.8e+02 Score=27.37 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
++.++.|+++|+|++.+- |=|| |||. ..-|.+.++.++++|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----cccc-hHHHHHHHHHHHHCCCCEe
Confidence 457889999999999883 1244 5653 4457888888888888754
No 163
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.81 E-value=30 Score=34.55 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=37.6
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCC----ceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVR----NQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~----G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+++.++.+++.|..+|.+. ..+.... -.+... ...|.++.++|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 55677889999999999663 2232111 112211 1368899999999999999887
No 164
>PLN02429 triosephosphate isomerase
Probab=44.18 E-value=44 Score=35.26 Aligned_cols=49 Identities=20% Similarity=0.090 Sum_probs=35.2
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
...+|+.|++.|-+ .|..++-.|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999888 777777665533 22233334449999999999997
No 165
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=44.04 E-value=11 Score=31.84 Aligned_cols=36 Identities=22% Similarity=0.551 Sum_probs=28.4
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHH
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAE 106 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~ 106 (523)
.+..|-..+|.+-. .||.|..|||. +|.+||++|.|
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alk 55 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALK 55 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHc
Confidence 45679888888765 68999999999 99999999987
No 166
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.94 E-value=47 Score=36.71 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=45.4
Q ss_pred eeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 48 iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.-|.+.|.+.-++.++++.+.|++.|++...-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34666677778889999999999999998876543 268889999999999886654
No 167
>PLN02561 triosephosphate isomerase
Probab=43.83 E-value=47 Score=33.92 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=39.8
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
...+|++|++.|-+ .|..++..|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999998 787777666533 45677778899999999999997
No 168
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=43.81 E-value=91 Score=31.83 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=67.8
Q ss_pred EEEEEEEeeCCCCCccch----HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCE--EEEe
Q 009890 41 RVLISGSIHYPRSTPEMW----PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY--AHLR 114 (523)
Q Consensus 41 ~~l~sG~iHy~R~~~~~W----~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~--Vilr 114 (523)
.+-+++..|+.+.|.... -+.|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 477888887766433322 23455555789998888443 4444 788999999999765 4555
Q ss_pred cCceec-------cccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 115 IGPYVC-------AEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 115 ~GPyi~-------aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
+-|-.. .+|..-.+|.|+.+.=. ....+....+++--++..++++.+++
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555333 23677778999875100 01122234556666777777777764
No 169
>PRK15492 triosephosphate isomerase; Provisional
Probab=43.55 E-value=49 Score=33.92 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=39.5
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
...+|++|++.|-+ .|..++-.|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999998 788777666533 44566778899999999999997
No 170
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.45 E-value=1.4e+02 Score=30.20 Aligned_cols=83 Identities=10% Similarity=0.090 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEE--EEecCceeccccCCCCCCccccCCC
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLRIGPYVCAEWNFGGFPLWLHFIP 136 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~~p 136 (523)
.+.++.+++.|+++|++++ ..|.--........+...|.+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~----~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFL----KSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEe----cCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 5789999999999999976 222211112112346888888999998863 33334553
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 137 GIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 137 ~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
+.+-+.|+.-++...+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334466666666666666666555
No 171
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=43.39 E-value=99 Score=30.63 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=63.9
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeecc-CcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 132 (523)
.+.++++.++.++++|+.++.+|..... ....+..+ |..|-..-+.+|++.|+. . |-|.++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 5788999999999999999999987755 22222333 678999999999998872 2 223333
Q ss_pred cCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcc
Q 009890 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEK 166 (523)
Q Consensus 133 ~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~ 166 (523)
.-+.+ ..+..+...+..|++.+.+.|+..+
T Consensus 112 avD~d----~~~~~~~~~v~~Y~~a~~~~l~~~g 141 (212)
T cd06418 112 AVDFD----ALDDEVTEVILPYFRGWNDALHEAG 141 (212)
T ss_pred EeecC----CCcchhHHHHHHHHHHHHHHHHhcC
Confidence 22111 1233477888899999999988553
No 172
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=41.91 E-value=32 Score=26.66 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=18.8
Q ss_pred cCCCceEEEEEeCCCCeeEEEEEC------------CeEEEecCeeEEEc
Q 009890 367 TGSGLCSAFLANIGTNSDVTVKFN------------GNSYLLPAWSVSIL 404 (523)
Q Consensus 367 ~~~~~~~~Fl~N~~~~~~~~V~f~------------~~~~~lp~~svsIl 404 (523)
.+++....|+.|+.++. .+|++. .+.++|||+.|.|+
T Consensus 8 ~~~~~~y~F~~N~s~~~-~~v~l~~~~~dll~g~~~~~~~~L~p~~v~Vl 56 (58)
T PF08533_consen 8 ENDGGRYLFLLNFSDEP-QTVTLPESYTDLLTGETVSGGLTLPPYGVRVL 56 (58)
T ss_dssp ---ETTEEEEEE-SSS--EE----TT-EEEES-------SEE-TTEEEEE
T ss_pred EcCCCEEEEEEECCCCC-EEEEcCCCceecccCcceeeEEEECCCEEEEE
Confidence 33457889999988653 445442 12378888888776
No 173
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=41.86 E-value=51 Score=33.69 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=40.4
Q ss_pred CCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 53 ~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
.|.+.=++.++++.+.|++.|+++++.+- + ..+...++.|++.|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 35555688999999999999999887653 1 27889999999999987753
No 174
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.70 E-value=34 Score=36.46 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=45.0
Q ss_pred eeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 48 iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.++ |.+...=.-..++++++|-++|.+.++|.-.++.+ -+-.-..+|.++.+.|++.||-+++-+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344 54443333346789999999999999999654310 001122379999999999999998864
No 175
>PTZ00333 triosephosphate isomerase; Provisional
Probab=41.38 E-value=56 Score=33.36 Aligned_cols=49 Identities=27% Similarity=0.194 Sum_probs=40.8
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
-..+|++|++.|-+ .|..++--|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 35789999999998 788777666433 55788889999999999999997
No 176
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=41.11 E-value=2.1e+02 Score=27.71 Aligned_cols=124 Identities=27% Similarity=0.368 Sum_probs=65.2
Q ss_pred EEEEEEEEEeeCCC--C-CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHH-HHHHHcCCE-EEE
Q 009890 39 KRRVLISGSIHYPR--S-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFV-KLVAEAGLY-AHL 113 (523)
Q Consensus 39 k~~~l~sG~iHy~R--~-~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl-~la~~~GL~-Vil 113 (523)
||++.++.||=--. + |---|+.++ ++..|++.|.. =|+|+--++.++ ++..+..-. ++|
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~--aR~l~~~~iNL--------------GfsG~~~le~~~a~~ia~~~a~~~~l 65 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAIL--ARRLGLDVINL--------------GFSGNGKLEPEVADLIAEIDADLIVL 65 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHH--HHHHT-EEEEE--------------E-TCCCS--HHHHHHHHHS--SEEEE
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHH--HHHcCCCeEee--------------eecCccccCHHHHHHHhcCCCCEEEE
Confidence 67788888874322 2 444598776 56779999987 467877666653 444443333 346
Q ss_pred ecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecc-ccccccccccccC
Q 009890 114 RIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQ-IENEYGNIDSAYG 192 (523)
Q Consensus 114 r~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~Q-IENEyg~~~~~~g 192 (523)
..||- .+-+.|.+.+..|++.|-+. ...=|||+++ +-.+-+.....-+
T Consensus 66 d~~~N-----------------------~~~~~~~~~~~~fv~~iR~~--------hP~tPIllv~~~~~~~~~~~~~~~ 114 (178)
T PF14606_consen 66 DCGPN-----------------------MSPEEFRERLDGFVKTIREA--------HPDTPILLVSPIPYPAGYFDNSRG 114 (178)
T ss_dssp EESHH-----------------------CCTTTHHHHHHHHHHHHHTT---------SSS-EEEEE----TTTTS--TTS
T ss_pred EeecC-----------------------CCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEecCCccccccCchHH
Confidence 66652 13346778887777766221 2345999999 5554443322223
Q ss_pred cccHHHHHHHHHHHHhc
Q 009890 193 AAGKSYIKWAAGMALSL 209 (523)
Q Consensus 193 ~~~~~y~~~l~~~~~~~ 209 (523)
....++.+.+++.++++
T Consensus 115 ~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 115 ETVEEFREALREAVEQL 131 (178)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666677766654
No 177
>PRK14567 triosephosphate isomerase; Provisional
Probab=41.08 E-value=56 Score=33.40 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
-..+|+.|++.|-+ .|..++--|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 35789999999998 787777665533 44577778899999999999998
No 178
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=40.93 E-value=2.3e+02 Score=29.90 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=46.2
Q ss_pred CccchHHHHHHHHhCCCCEEEEccc----cCcCCCC------Cceee--------ccCcchHHHHHHHHHHcCCEEEEec
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEPV------RNQYN--------FEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvf----Wn~HEp~------~G~yd--------F~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.+...+.|+.|...++|+...++- |.+.-+. .|.+. |=-..|+..+++.|++.|+.||..+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7788899999999999999998873 5433211 12221 0013589999999999999999775
Q ss_pred C
Q 009890 116 G 116 (523)
Q Consensus 116 G 116 (523)
-
T Consensus 96 D 96 (329)
T cd06568 96 D 96 (329)
T ss_pred C
Confidence 3
No 179
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=40.06 E-value=58 Score=33.50 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=43.0
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCC--CCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEP--VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp--~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.++..++.++++++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|++.|+.|.+..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677889999999999999999875422111 11211122 2368899999999999988765
No 180
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=39.36 E-value=45 Score=36.49 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=46.2
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEE-EEecCceeccccCCCCCCc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA-HLRIGPYVCAEWNFGGFPL 130 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V-ilr~GPyi~aEw~~GG~P~ 130 (523)
..+.-+..|+.+|+.|+|+|=+++.=..--+.+-.|.= -..|.+..++++.+.|..+ +|.+| ||||.
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~g 258 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFPG 258 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCCC
Confidence 55667889999999999999998754322222222221 1245667778889999985 68886 88883
No 181
>PRK14566 triosephosphate isomerase; Provisional
Probab=38.89 E-value=63 Score=33.19 Aligned_cols=49 Identities=22% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
-..+|++|++.|-+ .|..++..|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999988 787777665533 44567788999999999999997
No 182
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=38.66 E-value=58 Score=38.43 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHhCCCC--EEEEccccCcCCCCCceeeccCc----chHHHHHHHHHHcCCEEEEecCceeccccC
Q 009890 55 PEMWPDLIQKSKDGGLD--VIETYVFWNLHEPVRNQYNFEGR----YDLVKFVKLVAEAGLYAHLRIGPYVCAEWN 124 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN--~V~tYvfWn~HEp~~G~ydF~G~----~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 124 (523)
-+.-++..+.++++|+. ++-+-+.|.- +.=||+=+ .++..|++-.++.|+++++-+-|+|...-.
T Consensus 310 ls~~~dvv~~~~~agiPld~~~~DiDyMd-----~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~ 380 (805)
T KOG1065|consen 310 LSVVRDVVENYRAAGIPLDVIVIDIDYMD-----GYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSS 380 (805)
T ss_pred HHHHHHHHHHHHHcCCCcceeeeehhhhh-----cccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCcc
Confidence 34457899999999998 6666666652 22244322 258999999999999999999888875443
No 183
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=37.85 E-value=25 Score=36.86 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=64.8
Q ss_pred EEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE-EecCcee
Q 009890 41 RVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYV 119 (523)
Q Consensus 41 ~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi 119 (523)
.++++-+..--+ -|+.|++.|..+-+.|+|+|+- +|+.-. |...|.++|+++|..++ +|--|.-
T Consensus 35 ~liiGiA~~GG~-lp~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~p~~~ 99 (301)
T PF07755_consen 35 TLIIGIAPAGGR-LPPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRKPPKD 99 (301)
T ss_dssp EEEE---STTHC-CHCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS--SS
T ss_pred EEEEecCcCCCc-CCHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccCCCcc
Confidence 344443333333 3588999999999999999998 777433 67899999999999776 5542210
Q ss_pred ccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHH
Q 009890 120 CAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYI 199 (523)
Q Consensus 120 ~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~ 199 (523)
++.| .+ . -..-.+++|++= |.- +..||.+.
T Consensus 100 --------~~~~----~g----------------------------~-~~~~~~~rv~~v-----GTD----cavGK~tT 129 (301)
T PF07755_consen 100 --------LPVA----SG----------------------------R-IREVKAKRVLTV-----GTD----CAVGKMTT 129 (301)
T ss_dssp -----------------S----------------------------G-GGG-SSEEEEEE-----ESS----SSSSHHHH
T ss_pred --------cccc----cC----------------------------c-cccCCCCEEEEE-----ccC----ccccHHHH
Confidence 0000 00 0 001245677662 321 24688885
Q ss_pred H-HHHHHHHhcCCCcceEEccC
Q 009890 200 K-WAAGMALSLDTGVPWVMCQQ 220 (523)
Q Consensus 200 ~-~l~~~~~~~g~~vP~~~~~~ 220 (523)
. .|.+.+++.|++.-++-..|
T Consensus 130 al~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 130 ALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp HHHHHHHHHHTT--EEEEE-SH
T ss_pred HHHHHHHHHHcCCCceEEecCC
Confidence 4 58888999999987776555
No 184
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=37.54 E-value=99 Score=32.00 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=80.8
Q ss_pred CccchHHHHHHHHhCCCCEEEEccc----cCcCCC----------------CCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP----------------VRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvf----Wn~HEp----------------~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
+.+...+.|+.|...++|++..++- |.+--+ ..|.|.- .|+..+++.|++.|+.||.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 6788899999999999999999876 644321 1223333 4999999999999999997
Q ss_pred ecCceeccccCCCCCCccccCCC-Ce-------eeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEecccccccc
Q 009890 114 RIGPYVCAEWNFGGFPLWLHFIP-GI-------QFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG 185 (523)
Q Consensus 114 r~GPyi~aEw~~GG~P~WL~~~p-~i-------~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg 185 (523)
.+=---|++.-.-+.|.-....+ +. .+-..+ .++.+|++.|++.+. ++| .++.|-+- .-|+-
T Consensus 91 EiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~----~~t~~fl~~l~~e~~--~lf---~~~~iHiG-gDE~~ 160 (303)
T cd02742 91 EIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTL----PKGYDFLDDLFGEIA--ELF---PDRYLHIG-GDEAH 160 (303)
T ss_pred eccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCC----ccHHHHHHHHHHHHH--HhC---CCCeEEec-ceecC
Confidence 75332344432222232111100 00 122223 335556666666666 444 12433221 11221
Q ss_pred ccccccCcccHHHHHHHHHHHHhcCCC
Q 009890 186 NIDSAYGAAGKSYIKWAAGMALSLDTG 212 (523)
Q Consensus 186 ~~~~~~g~~~~~y~~~l~~~~~~~g~~ 212 (523)
... .....-..|++.+.+.+++.|..
T Consensus 161 ~~~-~~~~l~~~f~~~~~~~v~~~g~~ 186 (303)
T cd02742 161 FKQ-DRKHLMSQFIQRVLDIVKKKGKK 186 (303)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHcCCe
Confidence 100 00112356788888888888743
No 185
>PRK06703 flavodoxin; Provisional
Probab=37.48 E-value=1.6e+02 Score=26.81 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=58.5
Q ss_pred ECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 36 idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.....++++...+-.-.+|..+.+.+..+++.-++.....+|-...-. |.. +....+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 3344555665544433335666777788777655555455555221100 110 12345667788899999877654
Q ss_pred CceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 116 GPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 116 GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
.. +++..++..-++.+++|.++|++.++
T Consensus 121 --~~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 --LK------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred --eE------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 00 11222234677888899999987766
No 186
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=37.36 E-value=68 Score=32.82 Aligned_cols=49 Identities=29% Similarity=0.215 Sum_probs=37.6
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
..++|++|++.|-+ .|..++-.|+=+ +..+.+=++.|.++||.+||++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 45789999999988 677666555433 23456778999999999999997
No 187
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=37.15 E-value=49 Score=37.91 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=43.8
Q ss_pred eeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 48 iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
+=|.|.|.+.-+..++++++.|+++|++....|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 44666777778888999999999999998766643 378899999999999864
No 188
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=36.80 E-value=2.1e+02 Score=27.09 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHH
Q 009890 151 MQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMAL 207 (523)
Q Consensus 151 ~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~ 207 (523)
+.+-+.+++..++ ..+.++|.+ .||-|.-.-++.+..+.|++.|..+-.
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq 149 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQ 149 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445566666666 245688887 599987444456678889876655543
No 189
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.63 E-value=1.8e+02 Score=29.19 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=56.6
Q ss_pred CCccchHHHHHHHHhCCCCEEEEccccCcCCCC-Cceeecc----CcchHHHHHHHHHHcCCEEEEecCceeccccCCCC
Q 009890 53 STPEMWPDLIQKSKDGGLDVIETYVFWNLHEPV-RNQYNFE----GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGG 127 (523)
Q Consensus 53 ~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~-~G~ydF~----G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG 127 (523)
++++.-+..-+.+++.|+.+...-. ..|.+. ++.-|=. ....+.+.|++|++.|..+|.-. |
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~-----------~ 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA-----------G 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------C
Confidence 4566667777788899998876421 112111 1110000 11257888999999999876422 1
Q ss_pred CCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccc
Q 009890 128 FPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY 184 (523)
Q Consensus 128 ~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEy 184 (523)
.+.|.. .+++...+.+...++.++++.++++ |-+.|||-.
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~G---------V~i~iE~~~ 160 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRAS---------VTLAFEIMD 160 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHhC---------CEEEEeecC
Confidence 121211 1224444555667788888877543 234577753
No 190
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=36.51 E-value=48 Score=35.79 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCEEEE-cccc---CcCC--------CCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 60 DLIQKSKDGGLDVIET-YVFW---NLHE--------PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~t-YvfW---n~HE--------p~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.|.-+|++|+++|=+ .++= ..|- -.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~---~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDP---HFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6778889999999954 2321 1111 111 57778899999999999999999763
No 191
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=36.37 E-value=98 Score=28.44 Aligned_cols=92 Identities=12% Similarity=0.219 Sum_probs=46.6
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeecc-CcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWL 132 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 132 (523)
.+.+.++.++.++++|+..+.+|.....+. ......++ |..|-..-+..|++.|+. . |-|.++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 468899999999999999999998762221 11111221 567889999999999883 1 233333
Q ss_pred cCCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 009890 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (523)
Q Consensus 133 ~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~ 165 (523)
. +.+-..+..+...+..|++.+.+.|+.+
T Consensus 100 a----vD~d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 100 A----VDYDATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGGG
T ss_pred E----eecCCCchhhhhHHHHHHHHHHHHHhhC
Confidence 2 1122356677788888888888888854
No 192
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=36.17 E-value=34 Score=27.45 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=20.1
Q ss_pred CcchhhHHHHHHHHHHHHHhhc----CCeeEEEecc
Q 009890 1 MASKEILLLVLCWGFVVLATTS----FGANVTYDHR 32 (523)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----~~~~vt~d~~ 32 (523)
|++|.+++.++.+++...+-++ .+..=+||..
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP~YDEd 36 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGEEPSYDED 36 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCCCCCcCcc
Confidence 8999998877776654433332 3444567654
No 193
>PRK10658 putative alpha-glucosidase; Provisional
Probab=36.08 E-value=78 Score=36.76 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHhCCCCE--EEEccccCcCCC-CCceeeccCc--chHHHHHHHHHHcCCEEEEecCceecc
Q 009890 55 PEMWPDLIQKSKDGGLDV--IETYVFWNLHEP-VRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~--V~tYvfWn~HEp-~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
.+.-.+.++++|+.||-+ |..-.+|. .. .-+.|.|.-. -|..++++..++.|+++++.+=|||..
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 344567889999999864 44444563 22 2245665532 388999999999999999999999864
No 194
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.60 E-value=54 Score=32.74 Aligned_cols=60 Identities=18% Similarity=0.051 Sum_probs=38.0
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCC-ceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVR-NQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~-G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
+.+++.|+.++++|.+.|.+.-+-...++.. -.++. -...|..+.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4567889999999999998631100001111 01110 013578888999999999999873
No 195
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=35.03 E-value=2.6e+02 Score=28.96 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 009890 96 DLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPI 175 (523)
Q Consensus 96 dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpI 175 (523)
.+.+.|+.||+.|++|+|-+|- |. | . . .+ .++ +..++|.+.|++.++++++
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG-----~~--~------~-~--~~--~~~---~~~~~fa~sl~~~~~~~g~-------- 111 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGG-----AN--G------H-V--DL--NHT---AQEDNFVDSIVAIIKEYGF-------- 111 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeC-----CC--C------c-c--cc--CCH---HHHHHHHHHHHHHHHHhCC--------
Confidence 5788899999999999999862 11 1 0 0 01 122 3456788888898987654
Q ss_pred EeccccccccccccccCcccHHHHHHHHHHHHhcCC
Q 009890 176 ILSQIENEYGNIDSAYGAAGKSYIKWAAGMALSLDT 211 (523)
Q Consensus 176 I~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~ 211 (523)
=++.|+=|+........+....+++.|+++-...+-
T Consensus 112 DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~ 147 (312)
T cd02871 112 DGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP 147 (312)
T ss_pred CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 367777777542100001235666667666555543
No 196
>PRK09267 flavodoxin FldA; Validated
Probab=34.80 E-value=2.4e+02 Score=26.06 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=47.9
Q ss_pred ECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 36 idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
++.-..++++...|....++..|.+.+.+++...+.-..+.+|= ......-.-.| ..-+..+.+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34456688999998878788999999988877777766666662 21111000111 1236667788888896654
No 197
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=34.60 E-value=32 Score=34.82 Aligned_cols=49 Identities=27% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
...+|+.|++.|-+ .|..++--|. +.+..+.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 46789999999988 6766664444 3456789999999999999999997
No 198
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=34.09 E-value=38 Score=26.88 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=17.8
Q ss_pred EEEEeecCcEEEEEEcCeeeec
Q 009890 501 VLHVQSLGHALHAFINGKLVGE 522 (523)
Q Consensus 501 ~L~v~s~gh~lh~FVNg~~~G~ 522 (523)
.|+|.|.=.-..|||||+++|.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~ 24 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGT 24 (71)
T ss_pred EEEEEEECCCCEEEECCEEecc
Confidence 5777777556789999999995
No 199
>PLN02784 alpha-amylase
Probab=34.04 E-value=90 Score=37.36 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCC---CCce-ee----ccCcchHHHHHHHHHHcCCEEEEec
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEP---VRNQ-YN----FEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp---~~G~-yd----F~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+.+..++++|+++|-+.=+-....+ .+.. |+ |....+|..+++.|+++||.||+-+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35567779999999987532211111 1111 11 3345689999999999999999875
No 200
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.94 E-value=1e+02 Score=29.51 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=54.0
Q ss_pred EEEEeeCCCC-----CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeec--cC-cchHHHHHHHHHHcCCEEEEec
Q 009890 44 ISGSIHYPRS-----TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNF--EG-RYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 44 ~sG~iHy~R~-----~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF--~G-~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.-|.+||+|. +.++.+.-++.++..+++.=- .|--.|..++.+.- +- ...+.+|++.++++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~~---i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKYGT---VWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCceeE---EEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 3488999864 356677788888876553211 12233332333321 11 1357899999999999999988
Q ss_pred Cceeccc----c---CCCCCCccccCC
Q 009890 116 GPYVCAE----W---NFGGFPLWLHFI 135 (523)
Q Consensus 116 GPyi~aE----w---~~GG~P~WL~~~ 135 (523)
+++--.. . +....|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 8752111 1 145789998763
No 201
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=33.87 E-value=89 Score=33.01 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=47.3
Q ss_pred EECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcC
Q 009890 35 VIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAG 108 (523)
Q Consensus 35 ~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~G 108 (523)
.+.|++.+.++|--++ +.-++.+++.|++.+++..|=.+|.-.+ .|+.++.+.|++.|
T Consensus 224 ~l~~~~v~a~sGIg~P--------~~F~~~L~~~G~~~~~~~~f~DHh~yt~--------~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNP--------ERFFDTLESLGIEVVGTLAFPDHHRYTE--------QDLEKLEAEAKAAG 281 (326)
T ss_pred hccCCeeEEEEEcCCh--------HHHHHHHHHcCCeEEEeeECCCCCCCCH--------HHHHHHHHhhcccc
Confidence 3789999999999887 5566777889999999988777766433 58999999999888
No 202
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=33.76 E-value=1.1e+02 Score=35.56 Aligned_cols=75 Identities=15% Similarity=0.272 Sum_probs=53.6
Q ss_pred CccchHHHHHHHHhCCCCEEEEc-cc-----cCcC-CCC-Cceee---------ccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETY-VF-----WNLH-EPV-RNQYN---------FEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tY-vf-----Wn~H-Ep~-~G~yd---------F~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
.+.+|+ -++++|+++|-+- ++ |... -|. -|-|| |....|++++++.|++.||.||+-+=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 456664 6788999999762 32 3311 122 35566 33346899999999999999997642
Q ss_pred --------ceeccccCCCCCCccc
Q 009890 117 --------PYVCAEWNFGGFPLWL 132 (523)
Q Consensus 117 --------Pyi~aEw~~GG~P~WL 132 (523)
||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 4888999999999888
No 203
>PLN02540 methylenetetrahydrofolate reductase
Probab=33.67 E-value=1.2e+02 Score=34.57 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=59.3
Q ss_pred hCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcC--CEEEEecCceec-------cccCCCCCCccccCCCC
Q 009890 67 DGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAG--LYAHLRIGPYVC-------AEWNFGGFPLWLHFIPG 137 (523)
Q Consensus 67 a~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P~WL~~~p~ 137 (523)
++|.+.|-|=.| ||.+ .+.+|++.|++.| +.+|..+-|-.. +++..--+|.|+.+.=.
T Consensus 167 dAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i~~rLe 233 (565)
T PLN02540 167 DAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALE 233 (565)
T ss_pred HcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHHHHHHHH
Confidence 579999998443 4554 6889999999998 667888777554 35666668988875110
Q ss_pred eeeecCChhHHHHHHHHHHHHHHHHHhc
Q 009890 138 IQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (523)
Q Consensus 138 i~~Rt~d~~fl~~~~~~~~~i~~~ik~~ 165 (523)
....+++..++.--++..++++.+++.
T Consensus 234 -~~kddde~v~~~Gieia~e~~~~L~~~ 260 (565)
T PLN02540 234 -PIKDNDEAVKAYGIHLGTEMCKKILAH 260 (565)
T ss_pred -hcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 134455666777777788888888743
No 204
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=33.67 E-value=6.4e+02 Score=27.50 Aligned_cols=116 Identities=13% Similarity=0.196 Sum_probs=64.6
Q ss_pred hCCCCEEEEcc----ccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCe----
Q 009890 67 DGGLDVIETYV----FWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGI---- 138 (523)
Q Consensus 67 a~GlN~V~tYv----fWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i---- 138 (523)
++|+...|+.| ||+. |.+|=. .+-..+-+-+-..|+.|..-| |+ .|+|+...-.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl~-----g~~d~w--~kels~Ak~~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~ 139 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG-----GSADNW--YKELSTAKSAINPGMIVFASP-------WS---PPASMKTTNNRNGGN 139 (433)
T ss_pred ccCceEEEEEecccccccC-----CCcchh--hhhcccchhhcCCCcEEEecC-------CC---CchhhhhccCcCCcc
Confidence 47899999877 4554 222211 011122344667899998877 43 79999753211
Q ss_pred --eeecC-ChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCc---ccHHHHHHHHHHHHhcC
Q 009890 139 --QFRTD-NEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGA---AGKSYIKWAAGMALSLD 210 (523)
Q Consensus 139 --~~Rt~-d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~---~~~~y~~~l~~~~~~~g 210 (523)
++|.+ .+.|- .++...+..|++ +|=|+-+.-|.||..... .|.. ..++..+.++|-+....
T Consensus 140 ~g~Lk~e~Ya~yA----~~l~~fv~~m~~------nGvnlyalSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 140 AGRLKYEKYADYA----DYLNDFVLEMKN------NGVNLYALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred ccccchhHhHHHH----HHHHHHHHHHHh------CCCceeEEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 23322 23333 344444455564 456888888999987532 1221 24455666666666554
No 205
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=33.53 E-value=2.1e+02 Score=28.27 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=68.0
Q ss_pred cchHHHHHHHHhCCCC-EEEE--ccccCcCCC---CCc--eeec-----------cC--cchHHHHHHHHHHcCCEEEEe
Q 009890 56 EMWPDLIQKSKDGGLD-VIET--YVFWNLHEP---VRN--QYNF-----------EG--RYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN-~V~t--YvfWn~HEp---~~G--~ydF-----------~G--~~dL~~fl~la~~~GL~Vilr 114 (523)
+.-.+.++++|+.|+. +|+| |+.|...+. .=. -+|. +| +..+.+.|+.+.+.|..+.+|
T Consensus 54 ~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR 133 (213)
T PRK10076 54 EFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPR 133 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 4456889999999986 3555 344421111 111 1222 23 234556677788889888888
Q ss_pred cCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCce--Eecc---------cccc
Q 009890 115 IGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPI--ILSQ---------IENE 183 (523)
Q Consensus 115 ~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpI--I~~Q---------IENE 183 (523)
+ |. +|++ ++++.-++.+.+|+..+. +. +| +-++ +.=+
T Consensus 134 ~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~~ 181 (213)
T PRK10076 134 L-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGKT 181 (213)
T ss_pred E-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCCc
Confidence 7 32 3664 345555555555554430 11 22 1111 1112
Q ss_pred ccccccccCcccHHHHHHHHHHHHhcCCCc
Q 009890 184 YGNIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (523)
Q Consensus 184 yg~~~~~~g~~~~~y~~~l~~~~~~~g~~v 213 (523)
|-.. .......+.++.+++++++.|+.+
T Consensus 182 y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 182 WSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 2111 112467889999999999988876
No 206
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=33.33 E-value=38 Score=40.60 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=41.3
Q ss_pred CccchHHHHHHHHhCCCCEEEE------------ccccCcCCC------CCceeeccCcchHHHHHHHHHH-cCCEEEE
Q 009890 54 TPEMWPDLIQKSKDGGLDVIET------------YVFWNLHEP------VRNQYNFEGRYDLVKFVKLVAE-AGLYAHL 113 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~t------------YvfWn~HEp------~~G~ydF~G~~dL~~fl~la~~-~GL~Vil 113 (523)
|-+.|+.+|+++|+.|.|+|.. |-.-+.||- .-++|.|+ |+..+++-+++ -++.-|-
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~ 215 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSIT 215 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeee
Confidence 6799999999999999999973 333333332 22668888 99999988864 4665443
No 207
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=33.30 E-value=1.5e+02 Score=30.69 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=71.5
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccC---cchHHHHHHHHHHcCCEEEEecCceeccccCCCCCC-
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG---RYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFP- 129 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G---~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P- 129 (523)
+.+.-..-+.-+.+.|+.-|-+-.-|...+ ....+||+. ..||.++++-|++.|.-|+|.. +.|-..+..+
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~~~~~~~~~~~ 104 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----HSETGGNVANL 104 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----ECCHTTBHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----eCCcchhhHhH
Confidence 566778889999999999999988898622 234566653 4689999999999999888864 2221111111
Q ss_pred -----c---cccC--CCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccc
Q 009890 130 -----L---WLHF--IPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEY 184 (523)
Q Consensus 130 -----~---WL~~--~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEy 184 (523)
. ++.+ +.|+++-.-+. --+.+-+|+.+|++.-++++|+..=.|++.=--++-=|
T Consensus 105 ~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 105 EKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcCCCcccccC
Confidence 0 1111 12333211111 12456778999999999999987767766544444333
No 208
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=33.05 E-value=69 Score=32.66 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+.++.+.+.|++.|++.+..+ +++ .+.+.++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 4678889999999999987554 233 78889999999999887654
No 209
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=32.86 E-value=67 Score=37.51 Aligned_cols=55 Identities=27% Similarity=0.339 Sum_probs=40.8
Q ss_pred HHHHHHhCCCCEEEE-ccccCcCCCCC---c-eeec----------------cC-----cchHHHHHHHHHHcCCEEEEe
Q 009890 61 LIQKSKDGGLDVIET-YVFWNLHEPVR---N-QYNF----------------EG-----RYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 61 ~l~k~Ka~GlN~V~t-YvfWn~HEp~~---G-~ydF----------------~G-----~~dL~~fl~la~~~GL~Vilr 114 (523)
.|.-+|++|+++|+. .|+.-..|+.. | .|+| .+ .+.+..+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999997 67765555543 2 2333 22 247888999999999999997
Q ss_pred c
Q 009890 115 I 115 (523)
Q Consensus 115 ~ 115 (523)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 210
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=32.84 E-value=95 Score=37.70 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=54.7
Q ss_pred eeCCCC---CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc--chHHHHHHHHHHcCCEEEEecCceeccc
Q 009890 48 IHYPRS---TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCAE 122 (523)
Q Consensus 48 iHy~R~---~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~aE 122 (523)
+|..|+ +.+.-.+.++++++.||-+=.+++-|.+..- -+.|.|.-. -|..++++..++.|+++++-+-|+|..|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 455554 4556678999999999987777766665542 234555532 4889999999999999998888888764
No 211
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.75 E-value=62 Score=32.23 Aligned_cols=60 Identities=10% Similarity=-0.054 Sum_probs=38.3
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+..++.++.++++|..+|.+...+..-...+.+..-.-...|.++.++|++.|+.+.+.+
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 346788889999999999874332211111112111112356778889999999999987
No 212
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=32.66 E-value=52 Score=33.43 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=31.9
Q ss_pred hHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE-EecCceecc
Q 009890 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCA 121 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~a 121 (523)
-.+.++++|+.|+ -|+.++ +|.+ .-++.|++.|...| |-+|||..+
T Consensus 115 l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 115 LKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 4567778888888 556644 4443 33778888888866 888888765
No 213
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.48 E-value=87 Score=23.61 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=38.8
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEE
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA 111 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V 111 (523)
|..-.+.+.-+.+.|+|.+.++. +.........+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44456888889999999998876 2222234455555533 4889999999999765
No 214
>PLN03036 glutamine synthetase; Provisional
Probab=32.11 E-value=1e+02 Score=33.97 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=48.2
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc-c---------hHHHHH--HHHHHcCCEEEEecCceeccccC
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR-Y---------DLVKFV--KLVAEAGLYAHLRIGPYVCAEWN 124 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~-~---------dL~~fl--~la~~~GL~Vilr~GPyi~aEw~ 124 (523)
.-++..+.+.++|+++-.+ .||--||||.|.=. . .+-|++ ++|+++|+.+-.-|=|+. ++|+
T Consensus 231 i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~ 304 (432)
T PLN03036 231 ISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWN 304 (432)
T ss_pred HHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcC
Confidence 3345556778999999888 99999999988621 1 122322 678999999998888853 5777
Q ss_pred CCCCC
Q 009890 125 FGGFP 129 (523)
Q Consensus 125 ~GG~P 129 (523)
.-|.-
T Consensus 305 GSGmH 309 (432)
T PLN03036 305 GAGCH 309 (432)
T ss_pred CCCce
Confidence 76654
No 215
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=31.93 E-value=2.4e+02 Score=31.00 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=57.3
Q ss_pred ceEEECCEEEEEEEEEeeCCCCC---ccchHHHHHHHHhCCCCE--E--E-EccccCcCCCCCceeeccCcchHHHHHHH
Q 009890 32 RAVVIGGKRRVLISGSIHYPRST---PEMWPDLIQKSKDGGLDV--I--E-TYVFWNLHEPVRNQYNFEGRYDLVKFVKL 103 (523)
Q Consensus 32 ~~l~idGk~~~l~sG~iHy~R~~---~~~W~d~l~k~Ka~GlN~--V--~-tYvfWn~HEp~~G~ydF~G~~dL~~fl~l 103 (523)
++..+++.-+.+|.++-+-++.+ ++.-+...+.+++.|++. | . .|. -|+-.|.+..++++ ..-+.+-|+.
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekS-v~~~~~eL~r 226 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKS-YDAFLDDLQR 226 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHH-HHHHHHHHHH
Confidence 45667778888898777665542 344455566778888863 2 2 233 67777877777776 3457777899
Q ss_pred HHHcCCE-EEEecC
Q 009890 104 VAEAGLY-AHLRIG 116 (523)
Q Consensus 104 a~~~GL~-Vilr~G 116 (523)
|.+.|.. |++.||
T Consensus 227 A~~LGa~~VV~HPG 240 (413)
T PTZ00372 227 CEQLGIKLYNFHPG 240 (413)
T ss_pred HHHcCCCEEEECCC
Confidence 9999998 667787
No 216
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=31.71 E-value=26 Score=34.23 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=51.3
Q ss_pred CEEE-EEEEEEee-CCCCCccchHHHHHHHHhCCCCEEEEccccCcCC--------CCCc----eeeccCcchHHHHHHH
Q 009890 38 GKRR-VLISGSIH-YPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE--------PVRN----QYNFEGRYDLVKFVKL 103 (523)
Q Consensus 38 Gk~~-~l~sG~iH-y~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HE--------p~~G----~ydF~G~~dL~~fl~l 103 (523)
+++. .+.-|.-+ .-|+|.+.|.+.++++++-| ..+.++|.-.| -.++ ..++.|..+|..++.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 4443 33444444 34579999999999999998 45567787666 1122 5888899999999999
Q ss_pred HHHcCCEEEEecCc
Q 009890 104 VAEAGLYAHLRIGP 117 (523)
Q Consensus 104 a~~~GL~Vilr~GP 117 (523)
.+...+.|-.-.||
T Consensus 181 i~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 181 ISRADLVIGNDTGP 194 (247)
T ss_dssp HHTSSEEEEESSHH
T ss_pred HhcCCEEEecCChH
Confidence 99999998888876
No 217
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=31.69 E-value=52 Score=33.31 Aligned_cols=47 Identities=26% Similarity=0.509 Sum_probs=32.2
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE-EecCceecc
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCA 121 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~a 121 (523)
.-.+.++++|+.|+. |+.++ +|.+ .-++.|++.|-..| |-+|||..+
T Consensus 111 ~l~~~i~~l~~~gI~-VSLFi-----DPd~------------~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 111 KLKPIIERLKDAGIR-VSLFI-----DPDP------------EQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHCCCE-EEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 345677888888883 66643 4433 34778888888866 888888763
No 218
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=31.68 E-value=1.8e+02 Score=31.53 Aligned_cols=84 Identities=26% Similarity=0.331 Sum_probs=47.4
Q ss_pred CcchhhHHHHHHHHHHHHHhhc----------CCeeEEEecceEEECCEEE-EEEEEEeeCCCC-CccchHHHHHHHHhC
Q 009890 1 MASKEILLLVLCWGFVVLATTS----------FGANVTYDHRAVVIGGKRR-VLISGSIHYPRS-TPEMWPDLIQKSKDG 68 (523)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~vt~d~~~l~idGk~~-~l~sG~iHy~R~-~~~~W~d~l~k~Ka~ 68 (523)
|++-+...+++++++++++.++ .......|.++ |+|| .|+.|+--|.-+ ....--..-|-+|.+
T Consensus 1 M~~~~~~~~v~v~l~v~lv~a~~~g~~~la~~~~~p~d~~ddg----gt~waVLVAGSngyyNYRHQADvcHAYqiLrkg 76 (477)
T KOG1348|consen 1 MAPLMMVWKVLVFLLVLLVRAERRGLPLLASGFARPADDDDDG----GTRWAVLVAGSNGYYNYRHQADVCHAYQILRKG 76 (477)
T ss_pred CCcchhhHHHHHHHHHHHHhhhhcCCccccccccCcCcCCccC----ceeEEEEEecCCcccchhhhhhHHHHHHHHHhc
Confidence 5665555555555544444332 11223444444 6776 455676655433 333445667889999
Q ss_pred CCC----EEEEc--cccCcCCCCCce
Q 009890 69 GLD----VIETY--VFWNLHEPVRNQ 88 (523)
Q Consensus 69 GlN----~V~tY--vfWn~HEp~~G~ 88 (523)
|+. +|-.| |.-|-..|.||.
T Consensus 77 GikeEnIvv~MYDDIA~~~~NPrpG~ 102 (477)
T KOG1348|consen 77 GIKEENIVVMMYDDIANNEENPRPGV 102 (477)
T ss_pred CCCchhEEEEEehhhhcCCCCCCCce
Confidence 996 33345 456777788875
No 219
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.64 E-value=84 Score=33.29 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.++++.+.|++.|++.++++.. ..+...++.|++.|+.|..-+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~------------~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA------------DVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH------------HHHHHHHHHHHHCCCeEEEEE
Confidence 67899999999999998755532 157899999999999987654
No 220
>PLN02389 biotin synthase
Probab=31.54 E-value=73 Score=34.37 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=33.4
Q ss_pred hHHHHHHHHhCCCCEEEEccc--cCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 58 WPDLIQKSKDGGLDVIETYVF--WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~tYvf--Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
=++.++++|++|++.+..-+- -..+...-..-+|+ +..+.++.|++.|+.|.
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 478899999999998876221 11111111111343 66788999999999874
No 221
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.36 E-value=1.4e+02 Score=31.91 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=36.3
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.|...++++++.|++.|..+...-.-.... +..-...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~------~~~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDEN------GKIVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccc------cccCCHHHHHHHHHcCCEEEEEE
Confidence 488889999999999887754222211111 11124688999999999998654
No 222
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=31.35 E-value=1.1e+02 Score=30.91 Aligned_cols=85 Identities=26% Similarity=0.349 Sum_probs=55.0
Q ss_pred HhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcC--CEEEEecCceec-------cccCCCCCCccccCCC
Q 009890 66 KDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAG--LYAHLRIGPYVC-------AEWNFGGFPLWLHFIP 136 (523)
Q Consensus 66 Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P~WL~~~p 136 (523)
-++|.+.+-|=.+. |.+ .+.+|++.|++.| +.|++.+=|-.. +++..-++|.|+.+.=
T Consensus 157 i~aGA~f~iTQ~~f----------d~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~~~~~l 223 (274)
T cd00537 157 VDAGADFIITQLFF----------DND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDWLLERL 223 (274)
T ss_pred HHCCCCEEeecccc----------cHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHHHHHHH
Confidence 34699999885433 333 7899999999998 567777766544 4566677899987511
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 137 GIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 137 ~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
. ....+....++.-.++..++++.+++
T Consensus 224 ~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 224 E-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred H-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01122334455666777777777774
No 223
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=30.92 E-value=1.6e+02 Score=30.42 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHH-----------HHHHHHHHh
Q 009890 96 DLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFT-----------AKIVDMMKQ 164 (523)
Q Consensus 96 dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~-----------~~i~~~ik~ 164 (523)
...++++.|++.|-.++|-| |-.-||.|.|... ++.+-+.++.=+++.++|. .+|...-|
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a~AIev~gpEv~~l~~la~- 108 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHASAIEVPGPEVERLAELAK- 108 (337)
T ss_pred HHHHHHHHHhcCCceEEEee------hHhccCCCCccee--eEEEeecchhhhHHHHHHHHHhhcCCChHHHHHHHHhh-
Confidence 46788999999999999988 5566999999875 3333333444344444443 34444444
Q ss_pred cccccccCCceEecccccc
Q 009890 165 EKLYASQGGPIILSQIENE 183 (523)
Q Consensus 165 ~~l~~~~gGpII~~QIENE 183 (523)
++.=.+++=-||.|
T Consensus 109 -----~~~v~lv~G~iEre 122 (337)
T KOG0805|consen 109 -----KNNVYLVMGAIERE 122 (337)
T ss_pred -----cCCeEEEEEEEecc
Confidence 23345666678888
No 224
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=30.81 E-value=3.1e+02 Score=27.27 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=55.7
Q ss_pred ceEEECCEEEEEEEEEeeCCCC---Cc----------------------cchHHHHHHHHhCCCCEEEEccccCc-CCCC
Q 009890 32 RAVVIGGKRRVLISGSIHYPRS---TP----------------------EMWPDLIQKSKDGGLDVIETYVFWNL-HEPV 85 (523)
Q Consensus 32 ~~l~idGk~~~l~sG~iHy~R~---~~----------------------~~W~d~l~k~Ka~GlN~V~tYvfWn~-HEp~ 85 (523)
.-+.++|.++-+++........ .. +.-.+.++++| .+.+.|=.+++|.. .+..
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~ 200 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENY 200 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC
Confidence 4556799999999888664221 00 44567788888 68999999999962 2222
Q ss_pred CceeeccCcchHHHHHHHHHHcCCEEEEecCce
Q 009890 86 RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPY 118 (523)
Q Consensus 86 ~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPy 118 (523)
| ..+..++.+.+-++|..+|+.=+|-
T Consensus 201 p-------~~~q~~~a~~lidaGaDiIiG~HpH 226 (250)
T PF09587_consen 201 P-------TPEQRELARALIDAGADIIIGHHPH 226 (250)
T ss_pred C-------CHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 2 2256778888888999999977663
No 225
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=30.79 E-value=2.1e+02 Score=26.41 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=65.4
Q ss_pred ceeeccCcch-HHHHHHHHHHc-CCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 87 NQYNFEGRYD-LVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 87 G~ydF~G~~d-L~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
|.|=++.... +..|++...+. ...+|.|--|=..-++ +....||.+.++- ++=+|.-+.. ....+++.+++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~---l~~~i~~fl~~ 73 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHK---LLDTIVRFLKE 73 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHH---HHHHHHHHHHh
Confidence 4555654443 77888887554 4667888445444444 4556799987641 4455654443 33445555552
Q ss_pred cccccccCCceEecc------ccccccccccccCcccHHHHHHHHHHHHhcCCCc
Q 009890 165 EKLYASQGGPIILSQ------IENEYGNIDSAYGAAGKSYIKWAAGMALSLDTGV 213 (523)
Q Consensus 165 ~~l~~~~gGpII~~Q------IENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~v 213 (523)
.++.||.+. +||.+- .--+++..|++.+...|-.+
T Consensus 74 ------~~~~vViiD~lEYL~l~NgF~--------~v~KFL~~LkD~~~~~~~~l 114 (136)
T PF05763_consen 74 ------NGNGVVIIDGLEYLILENGFE--------SVLKFLASLKDYALLNNGTL 114 (136)
T ss_pred ------CCCcEEEEecHHHHHHHcCHH--------HHHHHHHHhHHHeeccCCEE
Confidence 345688887 677764 34579999999997665554
No 226
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=30.63 E-value=1.8e+02 Score=25.84 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=46.8
Q ss_pred ECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 36 IGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 36 idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.|..+++-+|.. .....++.+.+.++++.+.|+-.+-+..-=.. ...| +.++++|.+++|-++.-|
T Consensus 40 l~~gElvlttg~~-~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~-~~iP-----------~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 40 LRGGELVLTTGYA-LRDDDEEELREFIRELAEKGAAGLGIKTGRYL-DEIP-----------EEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCCeEEEECCcc-cCCCCHHHHHHHHHHHHHCCCeEEEEeccCcc-ccCC-----------HHHHHHHHHcCCCEEEeC
Confidence 5566655555543 33336667999999999999988877542111 1233 788999999999998766
No 227
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=30.13 E-value=78 Score=31.64 Aligned_cols=49 Identities=18% Similarity=0.096 Sum_probs=35.8
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
-+++|++|+.-|-+ .|..++-.|.-+ ..-+.+=.+-|-++||.||+++|
T Consensus 79 ~~mlkd~G~~wVIl-----GHSERR~~fgEs-d~~i~~K~~~Al~eGl~ViaCIG 127 (247)
T KOG1643|consen 79 AEMLKDLGAEWVIL-----GHSERRHVFGES-DEFIADKTAHALAEGLKVIACIG 127 (247)
T ss_pred HHHHHhCCCCEEEe-----cchhhhhhhCCc-hHHHHHHHHHHHHcCCeEEEEec
Confidence 35789999987777 677777666655 11234445778899999999998
No 228
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.05 E-value=94 Score=32.90 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+.|+++.+.|++.|++..+.+-. ..+...++.+++.|+.|..-+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~------------d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA------------DVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 367899999999999998754422 157899999999999987654
No 229
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=29.41 E-value=1.1e+02 Score=35.20 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 50 YPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 50 y~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
|-..|.+.-+..++++++.|++++|++-+.|... ++...++.+++.|+.+..-
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~------------n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFDALNDAR------------NLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcccCcchH------------HHHHHHHHHHHcCCEEEEE
Confidence 4555777788899999999999999988777433 8999999999999987654
No 230
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=29.39 E-value=1.1e+02 Score=31.40 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
++-+++++++|++.|-+. -+|-+ ....|++.|+++||..|+-+-|
T Consensus 109 e~F~~~~~~aGvdgviip-----DLP~e---------e~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIP-----DLPYE---------ESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHHHHHcCCeEEEec-----CCCHH---------HHHHHHHHHHHcCCCEEEEECC
Confidence 567899999999999883 33322 5789999999999998876644
No 231
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=29.08 E-value=70 Score=32.01 Aligned_cols=76 Identities=24% Similarity=0.214 Sum_probs=54.4
Q ss_pred EEEEEEeeCCC-CCccchHHHHHHHHhCCCCEEEEccccCcCCC-----------CCceeeccCcchHHHHHHHHHHcCC
Q 009890 42 VLISGSIHYPR-STPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-----------VRNQYNFEGRYDLVKFVKLVAEAGL 109 (523)
Q Consensus 42 ~l~sG~iHy~R-~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-----------~~G~ydF~G~~dL~~fl~la~~~GL 109 (523)
.+..|+-+..| ++.+.|.+.++++++.|+..|-+.- -.|. .+...++.|..+|..++.+.++..+
T Consensus 125 ~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~---~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 125 VLPPGASGPAKRWPAERFAALADRLLARGARVVLTGG---PAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEec---hhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 33344444444 6999999999999988887775432 2211 2345688898899999999999999
Q ss_pred EEEEecCceec
Q 009890 110 YAHLRIGPYVC 120 (523)
Q Consensus 110 ~Vilr~GPyi~ 120 (523)
.|-...||.--
T Consensus 202 ~I~~Dsg~~Hl 212 (279)
T cd03789 202 VVTNDSGPMHL 212 (279)
T ss_pred EEeeCCHHHHH
Confidence 98888877443
No 232
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=28.89 E-value=99 Score=31.54 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=55.8
Q ss_pred eeEEEecceEEECCEEEEEEEEEeeCCCC-CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeecc--CcchHHHHH
Q 009890 25 ANVTYDHRAVVIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFE--GRYDLVKFV 101 (523)
Q Consensus 25 ~~vt~d~~~l~idGk~~~l~sG~iHy~R~-~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~--G~~dL~~fl 101 (523)
..|... .+.+.+..++++.| +-.+ ..+.-.+.-+++|+.|....+.|+|=+...| |.|. |..-|..+-
T Consensus 12 s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~ 82 (260)
T TIGR01361 12 TVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLR 82 (260)
T ss_pred CEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHH
Confidence 345553 35566544666777 2122 4555667788889999998888887654443 4555 356688888
Q ss_pred HHHHHcCCEEEEec
Q 009890 102 KLVAEAGLYAHLRI 115 (523)
Q Consensus 102 ~la~~~GL~Vilr~ 115 (523)
+.|++.||.++-.|
T Consensus 83 ~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 83 RAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHhCCCEEEee
Confidence 99999999988776
No 233
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=28.82 E-value=94 Score=36.03 Aligned_cols=49 Identities=20% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
..++|++|++.|-+ .|..++..|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 474 a~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 474 GPMLAEIGVEYVII-----GHSERRQYFGET-DELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCcCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999998 788877666543 23344445999999999999997
No 234
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=28.79 E-value=1.7e+02 Score=28.38 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=40.9
Q ss_pred EEEEeeCCCCCccchHHHHHHHH-hCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 44 ISGSIHYPRSTPEMWPDLIQKSK-DGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 44 ~sG~iHy~R~~~~~W~d~l~k~K-a~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
..+.+.+.. ++.+.+.|++.. +.|+-.|..+-.. +.++.........++++|+++|+-|++.+|
T Consensus 74 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 74 GFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDL-------GGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSE-------TTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEecCCC--chhHHHHHHHhccccceeeeEecCCC-------CccccccHHHHHHHHHHHHhhccceeeecc
Confidence 344454433 455666666665 9999999976532 222222222235999999999999999987
No 235
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=28.78 E-value=79 Score=31.86 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=42.4
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc-----c-----hHHHHH--HHHHHcCCEEEEecCcee
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR-----Y-----DLVKFV--KLVAEAGLYAHLRIGPYV 119 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~-----~-----dL~~fl--~la~~~GL~Vilr~GPyi 119 (523)
.+..++.++.+.++|+++-.. +||-.||||...=. . -+-|.+ ++|+++||.+..-|=|+.
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 455678899999999999888 89999999976411 1 122222 677899999999887754
No 236
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.69 E-value=67 Score=32.53 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=38.4
Q ss_pred CCCccchHHHHHHHHhCCCCEEEEccccCcCC----CCCceeec-cCcchHHHHHHHHHHcCCEEEEecC
Q 009890 52 RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE----PVRNQYNF-EGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 52 R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HE----p~~G~ydF-~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
+.+.+.|+++.+.+|+.|+..+.|.+.-...+ ...-.|-- |+...=..+|+.+++.|+.|||-+|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 35899999999999999999999965321111 01111111 2333445688999999999999887
No 237
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=28.50 E-value=83 Score=32.64 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=41.7
Q ss_pred CccchHHHHHHHHhCCCCEEEEccc----cCcCCC------CCceeec------cCcchHHHHHHHHHHcCCEEEEec
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHEP------VRNQYNF------EGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvf----Wn~HEp------~~G~ydF------~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.+.-.+.|+.|...++|++..++- |.+--+ ..|.+.- =-..|+..+++.|++.|+.||..+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 6677889999999999999999874 332211 1122211 112499999999999999999765
No 238
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=28.45 E-value=77 Score=31.28 Aligned_cols=60 Identities=10% Similarity=-0.110 Sum_probs=38.2
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.+++.++.++++|..+|.+...+..-++..-+..-.-...+.++.+.|++.|+.+.+.+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 567788899999999999864322100000001000112357888899999999999987
No 239
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=28.39 E-value=63 Score=34.71 Aligned_cols=46 Identities=22% Similarity=0.558 Sum_probs=36.1
Q ss_pred CCCCCceeecc-C---------cchHHHHH--HHHHHcCCEEEEecCceeccccCCCCC
Q 009890 82 HEPVRNQYNFE-G---------RYDLVKFV--KLVAEAGLYAHLRIGPYVCAEWNFGGF 128 (523)
Q Consensus 82 HEp~~G~ydF~-G---------~~dL~~fl--~la~~~GL~Vilr~GPyi~aEw~~GG~ 128 (523)
-|-.||||.|+ | +.+..|++ +.|++.|+-+-+-|=| +.+.|++.|-
T Consensus 202 ~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG~ 259 (380)
T KOG0683|consen 202 VEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAGC 259 (380)
T ss_pred ccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCccc
Confidence 36789999995 2 24555555 7889999999999977 9999998663
No 240
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=28.33 E-value=2.5e+02 Score=27.51 Aligned_cols=98 Identities=19% Similarity=0.294 Sum_probs=54.0
Q ss_pred EeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCC
Q 009890 47 SIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFG 126 (523)
Q Consensus 47 ~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G 126 (523)
++|--=..|+.| +++++++|.+.|.. +.|.. .++.++++.++++|+.+=+-+-| ++..-
T Consensus 61 DvHLMv~~P~~~---i~~~~~~g~~~i~~-----H~E~~---------~~~~~~i~~ik~~g~k~GialnP----~T~~~ 119 (201)
T PF00834_consen 61 DVHLMVENPERY---IEEFAEAGADYITF-----HAEAT---------EDPKETIKYIKEAGIKAGIALNP----ETPVE 119 (201)
T ss_dssp EEEEESSSGGGH---HHHHHHHT-SEEEE-----EGGGT---------TTHHHHHHHHHHTTSEEEEEE-T----TS-GG
T ss_pred EEEeeeccHHHH---HHHHHhcCCCEEEE-----cccch---------hCHHHHHHHHHHhCCCEEEEEEC----CCCch
Confidence 345322356555 66678889998877 33322 37899999999999996544433 22222
Q ss_pred CCCccccCCCCeeeecCCh-----hHHHHHHHHHHHHHHHHHhc
Q 009890 127 GFPLWLHFIPGIQFRTDNE-----PFKAEMQRFTAKIVDMMKQE 165 (523)
Q Consensus 127 G~P~WL~~~p~i~~Rt~d~-----~fl~~~~~~~~~i~~~ik~~ 165 (523)
-+-.+|.....+.+=|-+| .|.+.+-+=++++.+.++++
T Consensus 120 ~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~ 163 (201)
T PF00834_consen 120 ELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPEN 163 (201)
T ss_dssp GGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhc
Confidence 2333444433333333344 56666666666666666643
No 241
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.31 E-value=87 Score=31.48 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=35.7
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceee---cc-CcchHHHHHHHHHHcCCEEEEec
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYN---FE-GRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~yd---F~-G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
..++.++.+++.|.++|.+.- .+...+.-+ +. -...|.+..++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467788999999999997631 111111000 10 01356788899999999999985
No 242
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=28.26 E-value=88 Score=32.66 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=45.5
Q ss_pred CCCCccchHHHHHHHHhCCCCEEEEccccCcCCC-------------CCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 51 PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEP-------------VRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 51 ~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp-------------~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
=|||.+.|.+.++.+++.|+.+| +++.-.|. .+...|..|..+|..+..+.+...++|---.||
T Consensus 197 K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSGp 273 (352)
T PRK10422 197 KCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSAP 273 (352)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCHH
Confidence 45799999999999988887655 44443321 123467778778888888888888877776665
No 243
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=28.22 E-value=67 Score=34.17 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=46.2
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCE--EE-Eec
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLY--AH-LRI 115 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~--Vi-lr~ 115 (523)
-.|++.+.|++..|+ +|+.--+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 443 ~~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 443 LTHESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred CcHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 359999999999998 6788888889999999986 899999999999986 33 555
No 244
>PRK07094 biotin synthase; Provisional
Probab=28.05 E-value=55 Score=33.83 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCEEEEccc---cCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 59 PDLIQKSKDGGLDVIETYVF---WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvf---Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
++.++++|++|++.|...+- -..++......+++ +..+.++.++++|+.|.
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v~ 182 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEVG 182 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCeec
Confidence 57788889999988876431 11111111123343 67788999999998653
No 245
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=28.03 E-value=5.8e+02 Score=26.99 Aligned_cols=128 Identities=20% Similarity=0.300 Sum_probs=77.2
Q ss_pred CccchHHHHHHHHhCC-CCEEEEccccCcCCC-CCceeecc-CcchHHHHHHHHHHc-CCEEEEecCceeccccCCCCCC
Q 009890 54 TPEMWPDLIQKSKDGG-LDVIETYVFWNLHEP-VRNQYNFE-GRYDLVKFVKLVAEA-GLYAHLRIGPYVCAEWNFGGFP 129 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~G-lN~V~tYvfWn~HEp-~~G~ydF~-G~~dL~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P 129 (523)
..+.|.|.++++.+.| .+.|+. |.--| .||-=++. ...-+.+.++.+++. .+.|++.+.|.+
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~iel----NiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~---------- 172 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIEL----NISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNI---------- 172 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEE----EccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCH----------
Confidence 4778999999999999 898888 44555 46533443 222567777666643 455666665411
Q ss_pred ccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhccc---cccc---CCc-eEecc----ccccccccccccCcc-cHH
Q 009890 130 LWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKL---YASQ---GGP-IILSQ----IENEYGNIDSAYGAA-GKS 197 (523)
Q Consensus 130 ~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l---~~~~---gGp-II~~Q----IENEyg~~~~~~g~~-~~~ 197 (523)
.. +..|++.+.+.++ ...| .++ |..-+ +.||.|.++ |.+ ...
T Consensus 173 ---------------~d--------i~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~ 226 (310)
T COG0167 173 ---------------TD--------IDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS---GPPLKPI 226 (310)
T ss_pred ---------------HH--------HHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC---cccchHH
Confidence 11 2333343443321 1111 122 22222 568888764 332 334
Q ss_pred HHHHHHHHHHhcCCCcceEEccCC
Q 009890 198 YIKWAAGMALSLDTGVPWVMCQQS 221 (523)
Q Consensus 198 y~~~l~~~~~~~g~~vP~~~~~~~ 221 (523)
=+++++++++..+.++|++-+.+.
T Consensus 227 al~~v~~l~~~~~~~ipIIGvGGI 250 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIGVGGI 250 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCc
Confidence 589999999999999999987764
No 246
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=28.01 E-value=1.2e+02 Score=32.20 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=48.1
Q ss_pred CEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 38 GKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 38 Gk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
|+|.+++.|.... + ....+++..+.+++.|++++ .++..+|.|- . .++++.++++++.+..+|+-+|
T Consensus 25 g~r~livt~~~~~-~-~~g~~~~v~~~L~~~~~~~~----~~~~v~~~p~---~---~~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 25 GKKALIVTGNGSS-K-KTGYLDRVIELLKQAGVEVV----VFDKVEPNPT---T---TTVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred CCeEEEEeCCCch-h-hccHHHHHHHHHHHcCCeEE----EeCCccCCCC---H---HHHHHHHHHHHHcCCCEEEEeC
Confidence 5788888875432 1 23567778888899999753 2345566552 2 3789999999999999999997
No 247
>PF15240 Pro-rich: Proline-rich
Probab=27.77 E-value=37 Score=32.97 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhc--CCeeEEEecceEEEC
Q 009890 7 LLLVLCWGFVVLATTS--FGANVTYDHRAVVIG 37 (523)
Q Consensus 7 ~~~~~~~~~~~~~~~~--~~~~vt~d~~~l~id 37 (523)
||+|||.+++|+.++| ....|.+.+....|-
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv~~e~~~~~~~ 33 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDVSQEESPSVIS 33 (179)
T ss_pred ChhHHHHHHHHHhhhccccccccccccCccccc
Confidence 4555554433333333 344577766555554
No 248
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=27.73 E-value=80 Score=31.16 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=40.3
Q ss_pred CCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceee-ccCcchHHH-HHHHHHHcCCEEEEecCceecc--ccCC
Q 009890 50 YPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYN-FEGRYDLVK-FVKLVAEAGLYAHLRIGPYVCA--EWNF 125 (523)
Q Consensus 50 y~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~yd-F~G~~dL~~-fl~la~~~GL~Vilr~GPyi~a--Ew~~ 125 (523)
..|+..++--..-+.+|+.|+.++-.---=..|-..+=-|- -.| .+++ .+++ +..-++|+||||..|- |.+-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG--EvE~~v~eL--~F~~~~i~RPG~ll~~R~esr~ 178 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG--EVERDVIEL--DFKHIIILRPGPLLGERTESRQ 178 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc--hhhhhhhhc--cccEEEEecCcceecccccccc
Confidence 45778888888999999999987755322222222211110 011 1111 1111 2234789999998873 4444
Q ss_pred CC
Q 009890 126 GG 127 (523)
Q Consensus 126 GG 127 (523)
|+
T Consensus 179 ge 180 (238)
T KOG4039|consen 179 GE 180 (238)
T ss_pred cc
Confidence 44
No 249
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=27.48 E-value=90 Score=31.60 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=31.1
Q ss_pred EECCEEEEEEEEEeeCCCC-CccchHHHHHHHHhCCCCEEE
Q 009890 35 VIGGKRRVLISGSIHYPRS-TPEMWPDLIQKSKDGGLDVIE 74 (523)
Q Consensus 35 ~idGk~~~l~sG~iHy~R~-~~~~W~d~l~k~Ka~GlN~V~ 74 (523)
.+.|++++.+.|..|+... ...+-+--++-||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4689999999999996554 444446788999999997654
No 250
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=27.39 E-value=1.4e+02 Score=30.42 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=39.7
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCC---ceeeccCc-chHHHHHHHHHHc-CCEEEEecCc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR---NQYNFEGR-YDLVKFVKLVAEA-GLYAHLRIGP 117 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~---G~ydF~G~-~dL~~fl~la~~~-GL~Vilr~GP 117 (523)
.++.|.+..++++++|++.|++-+. -|.. |. .+.++ +.+.++++.+++. ++.|.++++|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~----cP~~~~~g~-~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNIS----CPNVKGGGM-AFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECC----CCCCCCCcc-cccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 5788999999999999999999643 3332 11 12121 3466777777776 6767766653
No 251
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.36 E-value=53 Score=33.94 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=41.8
Q ss_pred HHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 61 ~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.-+++|+.|-+.|-+-|.|...||+- +-.-..-+++|...|+.++|..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~---neqk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEI---NEQKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHH---hHHHHHHHHHHHHHhhhcCCceeEee
Confidence 34678999999999999999999822 11112258999999999999999887
No 252
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=27.36 E-value=1.3e+02 Score=32.37 Aligned_cols=65 Identities=12% Similarity=0.228 Sum_probs=46.2
Q ss_pred EEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 39 KRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 39 k~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
++.++++|..- .....+.+....+++.|+.++ ..+..+|.| .. .++++.++++++.+..+|+.+|
T Consensus 32 ~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~----~f~~v~~np---~~---~~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMAGDVQKALEERNIFSV----IYDGTQPNP---TT---ENVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CEEEEEcCcch---hhCccHHHHHHHHHHcCCeEE----EeCCCCCCc---CH---HHHHHHHHHHHHcCCCEEEEeC
Confidence 77787876421 124677888888999998632 123455555 22 2789999999999999999997
No 253
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=27.11 E-value=2.6e+02 Score=30.01 Aligned_cols=82 Identities=24% Similarity=0.311 Sum_probs=55.0
Q ss_pred eEEEecceEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccC--cchHHHHHHH
Q 009890 26 NVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG--RYDLVKFVKL 103 (523)
Q Consensus 26 ~vt~d~~~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G--~~dL~~fl~l 103 (523)
.|.. ..+.++|...+++.|..- =-..+.-.+.-+.+|+.|+..++-..|= |+.--|.|.| ...+..+-+.
T Consensus 106 ~~~~--~~~~~g~~~~~~iaGpc~--iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~~ 177 (360)
T PRK12595 106 IVDV--KGEVIGDGNQSFIFGPCS--VESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQV 177 (360)
T ss_pred EEEE--CCEEecCCCeeeEEeccc--ccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHHH
Confidence 3555 336666554444656410 0145556677888899999999976654 4444466765 4578888999
Q ss_pred HHHcCCEEEEec
Q 009890 104 VAEAGLYAHLRI 115 (523)
Q Consensus 104 a~~~GL~Vilr~ 115 (523)
|++.||.++-.|
T Consensus 178 ~~~~Gl~~~t~v 189 (360)
T PRK12595 178 ADEYGLAVISEI 189 (360)
T ss_pred HHHcCCCEEEee
Confidence 999999988776
No 254
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.07 E-value=1.2e+02 Score=30.30 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
+.+++++++|.+.|.+.- -|.+ . ..++.++++.|+++||.+++-.-|
T Consensus 92 ~~i~~~~~~Gadgvii~d-----lp~e----~--~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 92 NFLNMARDVGADGVLFPD-----LLID----Y--PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHcCCCEEEECC-----CCCC----c--HHHHHHHHHHHHHcCCCEEEEECC
Confidence 347889999999999831 1111 0 016789999999999998877644
No 255
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=27.06 E-value=63 Score=33.90 Aligned_cols=114 Identities=17% Similarity=0.341 Sum_probs=62.4
Q ss_pred CEEEEccccCcCCCC-CceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCChhHHH
Q 009890 71 DVIETYVFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKA 149 (523)
Q Consensus 71 N~V~tYvfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~ 149 (523)
+.|.++|.|++|=-. | =...++.|+++|..|+ |-.|- ||..| ..|+.+ +.-+..+-
T Consensus 27 ~yiD~fvywsh~~i~iP----------~~~widaAHrnGV~vL---GTiif-e~~~~--~~~~~~---ll~~~~~g---- 83 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIP----------PAGWIDAAHRNGVKVL---GTIIF-EWGGG--AEWCEE---LLEKDEDG---- 83 (311)
T ss_dssp GG-SEEEET-TBSSE-------------HHHHHHHHHTT--EE---EEEEE-EEE----HHHHHH---HT---TTS----
T ss_pred cceeeEeecccccccCC----------CchhHHHHHhcCceEE---EEEEe-cCCch--HHHHHH---HHcCCccc----
Confidence 457788888854322 2 2457999999999995 33343 77643 345542 10111222
Q ss_pred HHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCcccHHHHHHHHHHHHh-cCCCcceE
Q 009890 150 EMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIKWAAGMALS-LDTGVPWV 216 (523)
Q Consensus 150 ~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~-~g~~vP~~ 216 (523)
..++.++|+++.+..++ +| +++-+|+...... ..+.-..+++.|++.+++ -+..|-|+
T Consensus 84 -~~~~A~kLi~ia~~yGF---DG---w~iN~E~~~~~~~--~~~~l~~F~~~l~~~~~~~~~~~v~WY 142 (311)
T PF03644_consen 84 -SFPYADKLIEIAKYYGF---DG---WLINIETPLSGPE--DAENLIDFLKYLRKEAHENPGSEVIWY 142 (311)
T ss_dssp ---HHHHHHHHHHHHHT-----E---EEEEEEESSTTGG--GHHHHHHHHHHHHHHHHHT-T-EEEEE
T ss_pred -ccHHHHHHHHHHHHcCC---Cc---eEEEecccCCchh--HHHHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 23458888898886654 23 7888898876410 113457888889998887 23345565
No 256
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=26.90 E-value=1e+02 Score=30.81 Aligned_cols=101 Identities=14% Similarity=0.213 Sum_probs=61.5
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEE-EEecCce----------eccccC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA-HLRIGPY----------VCAEWN 124 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V-ilr~GPy----------i~aEw~ 124 (523)
+.|+..++.+|..|+-.+.--+-|.-.. .-+|...|.+|++.|+ .|.++ ++-+=+| |..=.+
T Consensus 90 ~~w~~~~~~~~~~~~~l~sPa~~~~~~~------~~~g~~Wl~~F~~~~~-~~~~~D~iavH~Y~~~~~~~~~~i~~~~~ 162 (239)
T PF11790_consen 90 ALWKQYMNPLRSPGVKLGSPAVAFTNGG------TPGGLDWLSQFLSACA-RGCRVDFIAVHWYGGDADDFKDYIDDLHN 162 (239)
T ss_pred HHHHHHHhHhhcCCcEEECCeecccCCC------CCCccHHHHHHHHhcc-cCCCccEEEEecCCcCHHHHHHHHHHHHH
Confidence 3489999998888888887766554332 1124458999999998 33333 2333345 111123
Q ss_pred CCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 009890 125 FGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQE 165 (523)
Q Consensus 125 ~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~ 165 (523)
.-|.|.|+.+.--. ......=.+.+..|++++++.|...
T Consensus 163 ~~~kPIWITEf~~~--~~~~~~~~~~~~~fl~~~~~~ld~~ 201 (239)
T PF11790_consen 163 RYGKPIWITEFGCW--NGGSQGSDEQQASFLRQALPWLDSQ 201 (239)
T ss_pred HhCCCEEEEeeccc--CCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 34599999873200 0122233466788888888888744
No 257
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.83 E-value=1.4e+02 Score=28.53 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=33.4
Q ss_pred HHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 61 LIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 61 ~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
.+++++++|.+.|.+..... ...+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999999754321 136789999999999999876
No 258
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.78 E-value=8.9e+02 Score=26.68 Aligned_cols=79 Identities=10% Similarity=0.076 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCCEEEEccc----cCcCCCCCceeeccCcchHHHHHHHHHHcCCEE--EEecCceeccccCCCCCCccc
Q 009890 59 PDLIQKSKDGGLDVIETYVF----WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA--HLRIGPYVCAEWNFGGFPLWL 132 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvf----Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL 132 (523)
...++.+.+.|.++++++.- |..-...+ .++.+|.+.|+++||.+ ++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 45788999999999999873 44333222 47999999999998852 33345653
Q ss_pred cCCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 009890 133 HFIPGIQFRTDNEPFKAEMQRFTAKIVDMMK 163 (523)
Q Consensus 133 ~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik 163 (523)
+.+-+.|+..++...+.+.+-+++..
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11233455555555555555445544
No 259
>PRK04302 triosephosphate isomerase; Provisional
Probab=26.50 E-value=1.2e+02 Score=29.71 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=43.1
Q ss_pred EEEEEeeCCCCCccchH--HHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 43 LISGSIHYPRSTPEMWP--DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 43 l~sG~iHy~R~~~~~W~--d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
.+.+ -|+...++.... .-++.+|++|++.|-+ .|...+ -.|. .+.++++.|+++||.+|+..|.
T Consensus 58 ~v~a-q~~~~~~~G~~tg~~~~~~l~~~G~~~vii-----~~ser~--~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 58 PVYA-QHVDPVEPGSHTGHILPEAVKDAGAVGTLI-----NHSERR--LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred eEEe-ccCCCCCCCCchhhhHHHHHHHcCCCEEEE-----eccccc--cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 3444 566554333332 3478899999999987 453222 2333 5899999999999999987753
No 260
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=26.39 E-value=74 Score=32.32 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE-EecCceecc
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH-LRIGPYVCA 121 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~a 121 (523)
.+.++++|+.|+ -|+. +.+|.+.+ ++.|++.|-..| |-+|||..+
T Consensus 113 ~~~i~~l~~~gI-~VSL-----FiDP~~~q------------i~~A~~~GAd~VELhTG~YA~a 158 (237)
T TIGR00559 113 CELVKRFHAAGI-EVSL-----FIDADKDQ------------ISAAAEVGADRIEIHTGPYANA 158 (237)
T ss_pred HHHHHHHHHCCC-EEEE-----EeCCCHHH------------HHHHHHhCcCEEEEechhhhcC
No 261
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=26.34 E-value=49 Score=34.99 Aligned_cols=88 Identities=19% Similarity=0.415 Sum_probs=47.7
Q ss_pred EEEEEeeC------CCCCccchHHHHHHHHh-CCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 43 LISGSIHY------PRSTPEMWPDLIQKSKD-GGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 43 l~sG~iHy------~R~~~~~W~d~l~k~Ka-~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+.||. |. .+.+.+-+++..++--. .|+|-++-| |..-++.. ....++|++|++.|-|.|-
T Consensus 105 ~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iW-- 171 (324)
T PF08306_consen 105 PSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIW-- 171 (324)
T ss_dssp EEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEE--
T ss_pred ecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEe--
Confidence 45666 83 33455556667777666 499888885 44444433 3678899999999988832
Q ss_pred Cceecccc-CCCCCCccccCCCCeeeecCChhHHHHHHHHH
Q 009890 116 GPYVCAEW-NFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFT 155 (523)
Q Consensus 116 GPyi~aEw-~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~ 155 (523)
++= +.+.+-.|+-. ..++.|+++++++-
T Consensus 172 -----s~~~N~~am~k~~~~-------~~~~~~~~A~~~y~ 200 (324)
T PF08306_consen 172 -----SDQNNPIAMEKWFGE-------QRNPEFKDACEKYS 200 (324)
T ss_dssp -----E---GGGHHHHHCCC-------CCSHHHHHHHHHHG
T ss_pred -----ecCCChHHHHHhhhh-------ccCHHHHHHHHHhh
Confidence 111 11122233322 15678888877763
No 262
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.22 E-value=2.8e+02 Score=29.44 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=45.2
Q ss_pred CccchHHHHHHHHhCCCCEEEEccc----cCcCC----------------------------CCCceeeccCcchHHHHH
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVF----WNLHE----------------------------PVRNQYNFEGRYDLVKFV 101 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvf----Wn~HE----------------------------p~~G~ydF~G~~dL~~fl 101 (523)
+.+...+.|+.|...++|+...++- |.+-- +..|.|- ..|+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 6788899999999999999998763 32211 1123343 34999999
Q ss_pred HHHHHcCCEEEEecC
Q 009890 102 KLVAEAGLYAHLRIG 116 (523)
Q Consensus 102 ~la~~~GL~Vilr~G 116 (523)
+.|++.|+.||..+-
T Consensus 93 ~yA~~rgI~VIPEID 107 (357)
T cd06563 93 AYAAERGITVIPEID 107 (357)
T ss_pred HHHHHcCCEEEEecC
Confidence 999999999998753
No 263
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=26.10 E-value=2.5e+02 Score=30.09 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=58.4
Q ss_pred CCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEE----E
Q 009890 37 GGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA----H 112 (523)
Q Consensus 37 dGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V----i 112 (523)
.|++.+.++|=-|+ ..-++.++++|++.+.++.|=.+ |+|+ ..+|..+.+.++..||-+ .
T Consensus 232 ~~~~v~afaGIg~P--------~rFf~tL~~~g~~~~~~~~FpDH-------~~f~-~~~l~~l~~~~~~~~Ll~TeKDa 295 (336)
T COG1663 232 KGKRVVAFAGIGNP--------QRFFATLRNLGIQVVETLAFPDH-------YDFS-AADLEDLAKKAQADGLLTTEKDA 295 (336)
T ss_pred CCceEEEEEecCCh--------HHHHHHHHHcCcceeeeecCCch-------hhcc-HHHHHHHHhhhccceEEeeccce
Confidence 45889999999998 45577889999999999987555 4555 247888888887755543 2
Q ss_pred EecCceeccccCCCCCCccccCCCCeeeecCChhH
Q 009890 113 LRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPF 147 (523)
Q Consensus 113 lr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~f 147 (523)
++..++...+| |...+..++++.+.+.-
T Consensus 296 VKl~~~~~~~~-------~~l~v~~~~~~~e~~~~ 323 (336)
T COG1663 296 VKLRDFAPENV-------WNLPVLAIELSFELPDA 323 (336)
T ss_pred eecccccchhh-------ccceeeEEeccccchhH
Confidence 45544333333 44444555566665543
No 264
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=26.07 E-value=1.3e+02 Score=32.17 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=37.5
Q ss_pred hHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 58 WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
.+..+..+| |+..++. ...||-|. ++ -|.+-+++|+++++..+|..|
T Consensus 47 ydqV~~~Lk--g~~~~E~----~GVEPNP~---~~---Tv~kaV~i~kee~idflLAVG 93 (384)
T COG1979 47 YDQVVEALK--GIEVIEF----GGVEPNPR---LE---TLMKAVEICKEENIDFLLAVG 93 (384)
T ss_pred HHHHHHHhc--CceEEEe----cCCCCCch---HH---HHHHHHHHHHHcCceEEEEec
Confidence 355666666 8888887 56788883 23 689999999999999999997
No 265
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.04 E-value=23 Score=34.49 Aligned_cols=66 Identities=27% Similarity=0.478 Sum_probs=44.8
Q ss_pred EEEEEEEeeCCCC---CccchHHHHHHHHhCCCCEE--EEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 41 RVLISGSIHYPRS---TPEMWPDLIQKSKDGGLDVI--ETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 41 ~~l~sG~iHy~R~---~~~~W~d~l~k~Ka~GlN~V--~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
..+-+|--.|.|+ .|-.-+ +-+.++|.+++ .|-+ .--.--|||-...+|..|+++|+++||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3445666667775 344333 35677888865 4433 22234589988889999999999999988663
No 266
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=25.97 E-value=1.3e+02 Score=33.49 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=41.4
Q ss_pred CCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 50 YPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 50 y~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
|...|.+.-+.-++++++.|++++++.-..|.. +++...++.+++.|+.+.+-+
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~------------~n~~~ai~~ak~~G~~~~~~i 152 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDALNDP------------RNIQQALRAVKKTGKEAQLCI 152 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH------------HHHHHHHHHHHHcCCEEEEEE
Confidence 333445555555999999999999998766622 389999999999999887543
No 267
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.95 E-value=99 Score=31.75 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=50.6
Q ss_pred EEEE-EEEEEeeC-CCCCccchHHHHHHHHhCCCCEEEEccccCcC-CCC--------CceeeccCcchHHHHHHHHHHc
Q 009890 39 KRRV-LISGSIHY-PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLH-EPV--------RNQYNFEGRYDLVKFVKLVAEA 107 (523)
Q Consensus 39 k~~~-l~sG~iHy-~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~H-Ep~--------~G~ydF~G~~dL~~fl~la~~~ 107 (523)
++++ +..|+-+. -|+|.+.|.+.++.+++.|+.+| +.+..- |.. ...-+..|..+|..++.+.+..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~iv---l~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIK---LPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEE---EeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhC
Confidence 3443 34454454 45899999999999988887654 223211 110 0124667888899999888888
Q ss_pred CCEEEEecCc
Q 009890 108 GLYAHLRIGP 117 (523)
Q Consensus 108 GL~Vilr~GP 117 (523)
.++|---.||
T Consensus 255 ~l~I~nDSGp 264 (322)
T PRK10964 255 KAVVSVDTGL 264 (322)
T ss_pred CEEEecCCcH
Confidence 8888777776
No 268
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=25.48 E-value=48 Score=25.05 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=9.2
Q ss_pred EEEEEEcCeee
Q 009890 510 ALHAFINGKLV 520 (523)
Q Consensus 510 ~lh~FVNg~~~ 520 (523)
+=||||||+.+
T Consensus 20 I~~V~VNG~~v 30 (48)
T PF07908_consen 20 IDYVFVNGQIV 30 (48)
T ss_dssp EEEEEETTEEE
T ss_pred EEEEEECCEEE
Confidence 66899999875
No 269
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=25.15 E-value=1.7e+02 Score=26.95 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=44.7
Q ss_pred CEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccc-cCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 38 GKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVF-WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 38 Gk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvf-Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
++|.+++ +|-.-.....|...++.++. |+++|..-.. ....+..+..|+++. ..+.+.+++++.+..-+.-+|
T Consensus 12 ~~~~li~---~hg~~~~~~~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~~~~~~~~--~~~~~~~~i~~~~~~~v~liG 85 (251)
T TIGR02427 12 GAPVLVF---INSLGTDLRMWDPVLPALTP-DFRVLRYDKRGHGLSDAPEGPYSIED--LADDVLALLDHLGIERAVFCG 85 (251)
T ss_pred CCCeEEE---EcCcccchhhHHHHHHHhhc-ccEEEEecCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHhCCCceEEEE
Confidence 5666666 46666678899988888864 7877776432 333233334455542 233344445555543222223
Q ss_pred ceeccccCCCCCCcc
Q 009890 117 PYVCAEWNFGGFPLW 131 (523)
Q Consensus 117 Pyi~aEw~~GG~P~W 131 (523)
+..||.-.+
T Consensus 86 ------~S~Gg~~a~ 94 (251)
T TIGR02427 86 ------LSLGGLIAQ 94 (251)
T ss_pred ------eCchHHHHH
Confidence 466775443
No 270
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=25.08 E-value=76 Score=31.17 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=44.6
Q ss_pred eeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 48 iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
+..++.+.+.....++.+.++|.+.|.+.+.....+ ...-. .++.++.++|++.|+.+|+..
T Consensus 68 i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~---~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 68 LSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEE---EREML---EELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred CCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCch---HHHHH---HHHHHHHHHHHHcCCCEEEEE
Confidence 334478888888889999999999996655443221 11111 378889999999999998854
No 271
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.95 E-value=60 Score=34.36 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=32.1
Q ss_pred hHHHHHHHHhCCCCEEE-----EccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 58 WPDLIQKSKDGGLDVIE-----TYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 58 W~d~l~k~Ka~GlN~V~-----tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
-++.++++|++|++.+- ++..--.+.-.|+....+ +..+.++.|++.|+.+.
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 35668999999987654 211111122234443333 45678999999999864
No 272
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=24.90 E-value=1.5e+02 Score=31.31 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=46.6
Q ss_pred CEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 38 GKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 38 Gk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
|+|.+++.+..-+.+ -..+++..+.+++.|+++. . +...+|.| .. .++++.++.+++.+..+|+-+|
T Consensus 25 g~r~lvVt~~~~~~~--~g~~~~v~~~L~~~g~~~~-~---~~~v~~~p---~~---~~v~~~~~~~~~~~~D~IIavG 91 (357)
T cd08181 25 GKRALIVTGKSSAKK--NGSLDDVTKALEELGIEYE-I---FDEVEENP---SL---ETIMEAVEIAKKFNADFVIGIG 91 (357)
T ss_pred CCEEEEEeCCchHhh--cCcHHHHHHHHHHcCCeEE-E---eCCCCCCc---CH---HHHHHHHHHHHhcCCCEEEEeC
Confidence 578888876543222 2345667777889999632 2 24556655 22 3789999999999999999997
No 273
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=24.84 E-value=1.8e+02 Score=29.40 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=27.1
Q ss_pred EEeeCCCCCc--cchHHHHHHHHhCCCCEEEEcc
Q 009890 46 GSIHYPRSTP--EMWPDLIQKSKDGGLDVIETYV 77 (523)
Q Consensus 46 G~iHy~R~~~--~~W~d~l~k~Ka~GlN~V~tYv 77 (523)
+++|.+..+| +.|.+.+++|++.|.|.|.+-+
T Consensus 140 ~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~ 173 (253)
T PRK02412 140 LSYHDFEKTPPKEEIVERLRKMESLGADIVKIAV 173 (253)
T ss_pred EeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4899999887 4566899999999999999855
No 274
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=24.80 E-value=1.3e+02 Score=33.89 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=44.0
Q ss_pred CCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 50 YPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 50 y~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
|...+.+.-+..++++.+.|+++|+++.+-|.. +++...++.+++.|..+...
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeEEEE
Confidence 555577778889999999999999998877744 48999999999999987543
No 275
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.43 E-value=3.1e+02 Score=20.54 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=38.7
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCce----eecc--CcchHHHHHHHHHHcCCEEE
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ----YNFE--GRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~----ydF~--G~~dL~~fl~la~~~GL~Vi 112 (523)
.|....+.++.+.+.|+|.+++...=...+-.+|. +.++ +..++..+++..++.|..|.
T Consensus 8 ~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 8 RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 45667899999999999999875421111001233 3333 33568899999999997653
No 276
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.38 E-value=1.3e+02 Score=30.66 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=46.5
Q ss_pred CCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHH-HcCCEEEEecC
Q 009890 52 RSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVA-EAGLYAHLRIG 116 (523)
Q Consensus 52 R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~-~~GL~Vilr~G 116 (523)
+.+.++=.+..+.+-++|++.|+..++-...+...|..-|.....+.++.++.+ +.-+-+++|++
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 447777789999999999999999887776555666666664445556655553 44555667775
No 277
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=24.20 E-value=2.1e+02 Score=29.34 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred HHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceeccccCCCCCCccccCCCCeeeecCC
Q 009890 65 SKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDN 144 (523)
Q Consensus 65 ~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d 144 (523)
--...++.|.. +|-...+ .|.. .+. ...++++.|+++|++|++.+| .|..|++-. .....-..|
T Consensus 21 ~~~~~lt~v~p--~w~~~~~-~g~~--~~~-~~~~~~~~a~~~~~kv~~~i~-----~~~~~~~~~-----~~~~~~l~~ 84 (313)
T cd02874 21 ANAPYLTYIAP--FWYGVDA-DGTL--TGL-PDERLIEAAKRRGVKPLLVIT-----NLTNGNFDS-----ELAHAVLSN 84 (313)
T ss_pred HhcCCCCEEEE--EEEEEcC-CCCC--CCC-CCHHHHHHHHHCCCeEEEEEe-----cCCCCCCCH-----HHHHHHhcC
Confidence 34457777765 3333333 3443 332 347899999999999999986 122122100 000000112
Q ss_pred hhHHHHHHHHHHHHHHHHHhccc
Q 009890 145 EPFKAEMQRFTAKIVDMMKQEKL 167 (523)
Q Consensus 145 ~~fl~~~~~~~~~i~~~ik~~~l 167 (523)
+ +..++|++.|++.++++++
T Consensus 85 ~---~~r~~fi~~iv~~l~~~~~ 104 (313)
T cd02874 85 P---EARQRLINNILALAKKYGY 104 (313)
T ss_pred H---HHHHHHHHHHHHHHHHhCC
Confidence 2 2346799999999997764
No 278
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=24.10 E-value=1.7e+02 Score=28.68 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=39.4
Q ss_pred EEEeeCCCCCccc--hHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHc-CCEEE-EecCc
Q 009890 45 SGSIHYPRSTPEM--WPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEA-GLYAH-LRIGP 117 (523)
Q Consensus 45 sG~iHy~R~~~~~--W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~-GL~Vi-lr~GP 117 (523)
=++.|.+..+|+. |.+.+++|++.|.++|.+=+.=+ +.+....|.+|++.+++. +..+| +.-|+
T Consensus 117 I~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~---------~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~ 184 (224)
T PF01487_consen 117 ILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMAN---------SPEDVLRLLRFTKEFREEPDIPVIAISMGE 184 (224)
T ss_dssp EEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-S---------SHHHHHHHHHHHHHHHHHTSSEEEEEEETG
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccC---------CHHHHHHHHHHHHHHhhccCCcEEEEEcCC
Confidence 3579988876666 88999999999999999854211 122223466666666654 56665 55554
No 279
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=23.98 E-value=76 Score=34.23 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=44.3
Q ss_pred CCccchHHHHHHHHhCCCCEEEEccc--cCcCCCCCceeeccCcchHHHHHHHHHHcCCEE-EEecCceeccccCCCCCC
Q 009890 53 STPEMWPDLIQKSKDGGLDVIETYVF--WNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYA-HLRIGPYVCAEWNFGGFP 129 (523)
Q Consensus 53 ~~~~~W~d~l~k~Ka~GlN~V~tYvf--Wn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~V-ilr~GPyi~aEw~~GG~P 129 (523)
.+++.+.+.++.+|+.|++.+=+.++ .+...+.. |.- ...+..++++++.+.|+.+ +|-+| ||||
T Consensus 147 i~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~--~~~-a~~~~~~~~~~~~~~g~~l~~ldiG---------GGf~ 214 (394)
T cd06831 147 TTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQT--YVH-ALSDARCVFDMAEEFGFKMNMLDIG---------GGFT 214 (394)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCCCEEEeC---------CCcC
Confidence 47888999999999999998776554 33333222 110 0113466788888888764 57786 8998
Q ss_pred c
Q 009890 130 L 130 (523)
Q Consensus 130 ~ 130 (523)
.
T Consensus 215 ~ 215 (394)
T cd06831 215 G 215 (394)
T ss_pred C
Confidence 3
No 280
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.93 E-value=1.2e+02 Score=26.82 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=30.7
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
+++...+.++.+++.|+..|=.. +| ..-..++++|+++||.++
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 78899999999999998866542 11 245889999999999865
No 281
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=23.84 E-value=53 Score=34.54 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCEEE-Ec--ccc-C-cCCCCCceeeccCcchHHHHHHHHHHcCCEEE
Q 009890 59 PDLIQKSKDGGLDVIE-TY--VFW-N-LHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~-tY--vfW-n-~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
++.++++|++|++.+- +. ++- . .+.-.|+...++ +..+.++.|+++||.+.
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v~ 196 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPTT 196 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCccc
Confidence 6789999999999874 11 000 0 001123332332 45789999999999764
No 282
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.69 E-value=1.7e+02 Score=29.36 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
++-+++++++|++.|-..- + | ++ .+.++++.|+++|+..++-+.|
T Consensus 94 ~~fi~~~~~aG~~giiipD---l--~------~e---e~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPD---L--P------PE---EAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred HHHHHHHHHCCCcEEEECC---C--C------HH---HHHHHHHHHHHcCCcEEEEeCC
Confidence 4568889999999888731 1 1 11 6889999999999988765543
No 283
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.63 E-value=39 Score=36.49 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCEE-EEecCceeccccCCCCC--Ccccc
Q 009890 97 LVKFVKLVAEAGLYA-HLRIGPYVCAEWNFGGF--PLWLH 133 (523)
Q Consensus 97 L~~fl~la~~~GL~V-ilr~GPyi~aEw~~GG~--P~WL~ 133 (523)
-++.++.|.+.||.| |.||| ||-|....|-+ ++|+.
T Consensus 175 aE~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~ 213 (382)
T COG3320 175 AEKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLT 213 (382)
T ss_pred HHHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHH
Confidence 567889999999996 79996 88887776654 55654
No 284
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.63 E-value=4.2e+02 Score=28.52 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=53.4
Q ss_pred eEEECC-EEEEEEEEEeeCCCC--CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCc--chHHHHHHHHHHc
Q 009890 33 AVVIGG-KRRVLISGSIHYPRS--TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGR--YDLVKFVKLVAEA 107 (523)
Q Consensus 33 ~l~idG-k~~~l~sG~iHy~R~--~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~--~dL~~fl~la~~~ 107 (523)
.+.+.| +|++++.| |-+ .+++-.+.-+.+|+.|...++-+.|= |+---|.|.|- .-|.-+-+.+++.
T Consensus 93 ~v~iGg~~~l~vIAG----PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L~~~~~e~ 164 (352)
T PRK13396 93 PVPFGENHPVVVVAG----PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELLAAAREAT 164 (352)
T ss_pred CeEecCCCeEEEEEe----CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHHHHHHHHc
Confidence 455554 56778888 332 56777788889999999999977655 44444777763 3466666778899
Q ss_pred CCEEEEec
Q 009890 108 GLYAHLRI 115 (523)
Q Consensus 108 GL~Vilr~ 115 (523)
||.++-.+
T Consensus 165 Gl~~~tev 172 (352)
T PRK13396 165 GLGIITEV 172 (352)
T ss_pred CCcEEEee
Confidence 99988765
No 285
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=23.49 E-value=1.3e+02 Score=30.32 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.+.++++++.|++.|+++++-+-. ..+.+.++.|++.|+.|.+-+
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHHCCCeEEEEE
Confidence 367899999999999998866521 267889999999999887654
No 286
>PF11261 IRF-2BP1_2: Interferon regulatory factor 2-binding protein zinc finger; InterPro: IPR022750 IRF-2BP1 and IRF-2BP2 are nuclear transcriptional repressor proteins and can inhibit both enhancer-activated and basal transcription. They both contain N-terminal zinc finger and C-terminal RING finger domains []. This entry represents the N-terminal zinc finger domain of IRF-2BP1 and IRF-2BP2.
Probab=23.46 E-value=52 Score=25.66 Aligned_cols=31 Identities=26% Similarity=0.576 Sum_probs=26.5
Q ss_pred cccCcCCCC-CceeeccCcchHHHHHHHHHHc
Q 009890 77 VFWNLHEPV-RNQYNFEGRYDLVKFVKLVAEA 107 (523)
Q Consensus 77 vfWn~HEp~-~G~ydF~G~~dL~~fl~la~~~ 107 (523)
+.|...||. +|--||+|-..++..|+.|++.
T Consensus 18 mi~df~EpVCRgCvNyEGaDrIe~vie~arq~ 49 (54)
T PF11261_consen 18 MIWDFSEPVCRGCVNYEGADRIELVIESARQL 49 (54)
T ss_pred HHhhccchhhhhhcCcccchhHHHHHHHHHHH
Confidence 347889997 8999999998899999998764
No 287
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.43 E-value=1.8e+02 Score=28.84 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=38.2
Q ss_pred EeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 47 SIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 47 ~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
++|--=..|+.| ++++.++|.+.|.. +-|.. .++.++|+.++++|+.+-+-+.|
T Consensus 62 dvHLMv~~p~~~---i~~~~~~gad~i~~-----H~Ea~---------~~~~~~l~~ik~~g~k~GlalnP 115 (220)
T PRK08883 62 DVHLMVKPVDRI---IPDFAKAGASMITF-----HVEAS---------EHVDRTLQLIKEHGCQAGVVLNP 115 (220)
T ss_pred EEEeccCCHHHH---HHHHHHhCCCEEEE-----cccCc---------ccHHHHHHHHHHcCCcEEEEeCC
Confidence 455433345544 67788899999998 44432 26899999999999987665543
No 288
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=23.26 E-value=8.7e+02 Score=25.39 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHhc
Q 009890 267 YRPVEDLAFAVARFFQR 283 (523)
Q Consensus 267 ~r~~~d~~~~~~~~~~~ 283 (523)
.-+++.++..+.+.+..
T Consensus 272 vE~~eev~~~i~~~~~~ 288 (326)
T PRK08575 272 MEKISTIRRIVNKVKRK 288 (326)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 34688888888777774
No 289
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=23.19 E-value=1.9e+02 Score=27.41 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe-cCc
Q 009890 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR-IGP 117 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr-~GP 117 (523)
..+++++++|.+.|.+ +.|+. ...+.++++.|+++|+.+++- ++|
T Consensus 68 ~~~~~~~~aGad~i~~-----h~~~~--------~~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 68 LEAEMAFKAGADIVTV-----LGAAP--------LSTIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHHhcCCCEEEE-----EeeCC--------HHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 3568899999999998 33331 125789999999999998874 665
No 290
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.15 E-value=1.8e+02 Score=29.59 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
++-+++++++|++.|-+. -+|.+ ....+++.|+++||..++-.
T Consensus 105 e~f~~~~~~aGvdgviip-----Dlp~e---------e~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVA-----DLPLE---------ESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCChH---------HHHHHHHHHHHCCCcEEEEE
Confidence 456889999999998884 33332 67899999999999877544
No 291
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=23.13 E-value=82 Score=29.37 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEEeeCCCCCccchHHHHH-HHHhCCCCEEEE
Q 009890 42 VLISGSIHYPRSTPEMWPDLIQ-KSKDGGLDVIET 75 (523)
Q Consensus 42 ~l~sG~iHy~R~~~~~W~d~l~-k~Ka~GlN~V~t 75 (523)
+.+||||| ..|++.|. .+++.|+++.-+
T Consensus 3 VYLsGEIH------tdWRe~I~~ga~~~~L~v~F~ 31 (144)
T TIGR03646 3 VYLAGEIH------TDWREEIKEGAKSKNLPIVFS 31 (144)
T ss_pred EEEcCccc------chHHHHHHHHHHHcCCCeEEe
Confidence 57899999 47887664 456678876543
No 292
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.05 E-value=2.3e+02 Score=28.44 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccC---cchHHHHHHHHHHcCCEEEE
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEG---RYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G---~~dL~~fl~la~~~GL~Vil 113 (523)
++.++++++.|++.|+.++..+-.- ..-+++.+- ...+...++.|++.|+.|.+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~-~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIH-LAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 5678899999999999998543110 011111110 12567888999999998764
No 293
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.00 E-value=2.2e+02 Score=29.70 Aligned_cols=68 Identities=15% Similarity=0.350 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHhCCCCEEEEccc-cCc-CCCCCce-----eeccCc--chHHHHHHHHHHcCCEEEEecCceecc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVF-WNL-HEPVRNQ-----YNFEGR--YDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvf-Wn~-HEp~~G~-----ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
+.++-.+.++++++.||-+=.+++- |.. ++..-|. |.|.-. -|..++++..++.|++|++.+=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 6777899999999999876655553 532 2222232 333322 389999999999999999998887763
No 294
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=22.71 E-value=1.7e+02 Score=33.51 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=42.8
Q ss_pred CCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 50 YPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 50 y~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
|...|.+.-+..++++.+.|++.|++....|.. +++...++.|+++|+.|..-+
T Consensus 85 ~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 85 YRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred cccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCEEEEEE
Confidence 433456666778999999999999998876642 489999999999999877543
No 295
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=22.68 E-value=2.2e+02 Score=33.26 Aligned_cols=61 Identities=7% Similarity=0.083 Sum_probs=43.0
Q ss_pred CCccchHHHHHHHHhCCCCEEEEccccC---cCCCCCce---eeccC--cchHHHHHHHHHHcCCEEEE
Q 009890 53 STPEMWPDLIQKSKDGGLDVIETYVFWN---LHEPVRNQ---YNFEG--RYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 53 ~~~~~W~d~l~k~Ka~GlN~V~tYvfWn---~HEp~~G~---ydF~G--~~dL~~fl~la~~~GL~Vil 113 (523)
++++.-+..|+-+|+.|+++|+.--.-. ...+.|++ .-|+. .......+.+.+++|+...+
T Consensus 69 Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATf 137 (671)
T PRK14582 69 VRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVW 137 (671)
T ss_pred cCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 4677899999999999999999864432 22333443 24552 23467788999999998654
No 296
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=22.65 E-value=1.5e+02 Score=31.70 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=36.4
Q ss_pred CCEEEEEEEEEeeC---------------------CCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcc
Q 009890 37 GGKRRVLISGSIHY---------------------PRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRY 95 (523)
Q Consensus 37 dGk~~~l~sG~iHy---------------------~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~ 95 (523)
.+++.++.|.+-|| .|+..+.-++.|++.++.|...+- |.=+.=...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~--vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFA--VVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEE--EEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhccccccccccee--eeccCCCccccccc-----
Confidence 55677788888888 223333344455555666653211 11112233334443
Q ss_pred hHHHHHHHHHHcCCEEEEe
Q 009890 96 DLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 96 dL~~fl~la~~~GL~Vilr 114 (523)
||.++.++|+++++++.+.
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 7777778888777766654
No 297
>PRK09248 putative hydrolase; Validated
Probab=22.64 E-value=2.4e+02 Score=27.98 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=37.8
Q ss_pred EEEEEEeeCCCCCcc----chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 42 VLISGSIHYPRSTPE----MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 42 ~l~sG~iHy~R~~~~----~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
=++-|++|+...++. +-+..++.++.++++++.=.-.. .++. +....++.+++.|+.+=+..++
T Consensus 95 D~vi~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~--------~~~~----~~~~~~~~~~~~g~~lEvN~~~ 162 (246)
T PRK09248 95 DIVIAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNP--------KYPI----DIEAVVKAAKEHNVALEINNSS 162 (246)
T ss_pred CEEEEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCC--------CCcc----cHHHHHHHHHHhCCEEEEECCC
Confidence 346678886544433 33445666766777776543211 1222 4677888888999876565543
No 298
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.25 E-value=1.5e+02 Score=33.91 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=43.9
Q ss_pred eeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEe
Q 009890 48 IHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLR 114 (523)
Q Consensus 48 iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 114 (523)
..|...|.+.-+..++++.+.|++.|++...-|.. +++...++.|+++|+.|...
T Consensus 88 ~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 88 VGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAAKKAGAHVQGT 142 (592)
T ss_pred cccccccchhhHHHHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHHHHcCCEEEEE
Confidence 34555566777788999999999999998876643 48999999999999987644
No 299
>PRK08508 biotin synthase; Provisional
Probab=22.25 E-value=1.5e+02 Score=30.36 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeec--cC--cchHHHHHHHHHHcCCEE
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNF--EG--RYDLVKFVKLVAEAGLYA 111 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF--~G--~~dL~~fl~la~~~GL~V 111 (523)
++.++++|++|++.+..- .|..+..|.= ++ ..+..+.++.|++.|+.|
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 153 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LETSKEFFPKICTTHTWEERFQTCENAKEAGLGL 153 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 788999999999887752 2333222211 01 115566888899999865
No 300
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.20 E-value=1.3e+02 Score=30.91 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 37 GGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 37 dGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.++.++.....+.| .+++.|++.+.+-..=...||.+ ++|.++++.+++.++.+|+.-
T Consensus 178 ~~~~~v~~H~af~Y-------------l~~~~gl~~~~~~~~~~~~eps~--------~~l~~l~~~ik~~~v~~If~e 235 (286)
T cd01019 178 KTKPFFVFHDAYGY-------------FEKRYGLTQAGVFTIDPEIDPGA--------KRLAKIRKEIKEKGATCVFAE 235 (286)
T ss_pred CCCeEEEecccHHH-------------HHHHcCCceeeeecCCCCCCCCH--------HHHHHHHHHHHHcCCcEEEec
Confidence 45555555555555 47888999776421111233333 589999999999999988753
No 301
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.06 E-value=3e+02 Score=21.21 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHhCCCCEEEEccccCcCCC--CCc--eeeccCcchHHHHHHHHHHcCCEEE
Q 009890 55 PEMWPDLIQKSKDGGLDVIETYVFWNLHEP--VRN--QYNFEGRYDLVKFVKLVAEAGLYAH 112 (523)
Q Consensus 55 ~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp--~~G--~ydF~G~~dL~~fl~la~~~GL~Vi 112 (523)
|..-.+.++-+.+.|+|..+++.. +++ ... .+..++ .+.+++++..++.|..|+
T Consensus 12 pG~l~~i~~~l~~~~inI~~i~~~---~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 12 PGQLADIAAIFKDRGVNIVSVLVY---PSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEe---ccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 344567888899999999999863 222 222 344444 466799999999997654
No 302
>PLN02826 dihydroorotate dehydrogenase
Probab=22.01 E-value=1.1e+03 Score=25.92 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=36.7
Q ss_pred EEEEEeeCCCCCccchHHHHHHHHhCC--CCEEEEccccCcCCC-CCceeeccCcchHHHHHHHHH
Q 009890 43 LISGSIHYPRSTPEMWPDLIQKSKDGG--LDVIETYVFWNLHEP-VRNQYNFEGRYDLVKFVKLVA 105 (523)
Q Consensus 43 l~sG~iHy~R~~~~~W~d~l~k~Ka~G--lN~V~tYvfWn~HEp-~~G~ydF~G~~dL~~fl~la~ 105 (523)
+++.++.-...+.+.|+|-.+-++..+ .+.|++ |+--| .||.=+......+..+++.++
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylel----NiScPNtpglr~lq~~~~l~~ll~~V~ 249 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVI----NVSSPNTPGLRKLQGRKQLKDLLKKVL 249 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEE----ECCCCCCCCcccccChHHHHHHHHHHH
Confidence 567777655555556777777777766 777776 44444 355544444446777777665
No 303
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.94 E-value=1.2e+02 Score=31.31 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=49.0
Q ss_pred CCCCCccchHHHHHHHHhCCCCEEEEccccCcCC-----------CCCceeeccCcchHHHHHHHHHHcCCEEEEecCc
Q 009890 50 YPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHE-----------PVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGP 117 (523)
Q Consensus 50 y~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HE-----------p~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 117 (523)
+-|+|.+.|.+.++++.+-|+.+|=++-.-. .| +.+...|+.|..+|..++.+.+...+.|---.||
T Consensus 194 ~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~-~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSGp 271 (344)
T TIGR02201 194 FKCWDNDRFSALIDALHARGYEVVLTSGPDK-DELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSVP 271 (344)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEecCCCH-HHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCHH
Confidence 4567999999999999887877664432110 01 2234688899889999999999888888777776
No 304
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=21.61 E-value=1.2e+02 Score=26.01 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=22.3
Q ss_pred CcchhhHHHHHHHHHHHHHhhc---CCeeEEEecceEEECCE
Q 009890 1 MASKEILLLVLCWGFVVLATTS---FGANVTYDHRAVVIGGK 39 (523)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~---~~~~vt~d~~~l~idGk 39 (523)
|+.+..+|-++.+.++++.+|- ...+|+...-+...||.
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKsKRSVtveqPsts~n~d 42 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKSKRSVTVEQPSTSTNGD 42 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccccccccceeecCCccccCCC
Confidence 7777766665554444433221 34567776666666664
No 305
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=21.17 E-value=4.3e+02 Score=28.10 Aligned_cols=83 Identities=17% Similarity=0.340 Sum_probs=54.3
Q ss_pred CCCccchHHHHHHHHhCCCCEEEEccc-cCc---------CCCCCceeeccCcchHHHHHHHHHHcCCEEEEecCceecc
Q 009890 52 RSTPEMWPDLIQKSKDGGLDVIETYVF-WNL---------HEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIGPYVCA 121 (523)
Q Consensus 52 R~~~~~W~d~l~k~Ka~GlN~V~tYvf-Wn~---------HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~a 121 (523)
++||..|- .-++.-|+.++-|.++ |.. ..+++|+|.+ .++++++|+..|..
T Consensus 45 ~iPp~~~i---daAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~-----a~kLv~lak~yGfD----------- 105 (339)
T cd06547 45 TIPPADWI---NAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPV-----ADKLVEVAKYYGFD----------- 105 (339)
T ss_pred cCCCcHHH---HHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHH-----HHHHHHHHHHhCCC-----------
Confidence 46777774 4789999999999764 641 1114444433 58888999887764
Q ss_pred ccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 009890 122 EWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQ 164 (523)
Q Consensus 122 Ew~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~ 164 (523)
.|+.+.. ....++.-.+.+..|++.+-+.+++
T Consensus 106 --------Gw~iN~E---~~~~~~~~~~~l~~F~~~L~~~~~~ 137 (339)
T cd06547 106 --------GWLINIE---TELGDAEKAKRLIAFLRYLKAKLHE 137 (339)
T ss_pred --------ceEeeee---ccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 2444311 1111456678888899999888885
No 306
>PRK00870 haloalkane dehalogenase; Provisional
Probab=21.16 E-value=1.9e+02 Score=28.97 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=39.8
Q ss_pred CEEEEEEEEEeeCCCCCccchHHHHHHHHhCCCCEEEEccccCcCCCCC---ceeeccCcchHHHHHHHHHHcCC
Q 009890 38 GKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVR---NQYNFEGRYDLVKFVKLVAEAGL 109 (523)
Q Consensus 38 Gk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~---G~ydF~G~~dL~~fl~la~~~GL 109 (523)
|++.+++.| .-.....|...+..+.+.|+++|..-...-.....+ ..|+++. ..+...++.++.|+
T Consensus 46 ~~~lvliHG----~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~--~a~~l~~~l~~l~~ 114 (302)
T PRK00870 46 GPPVLLLHG----EPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYAR--HVEWMRSWFEQLDL 114 (302)
T ss_pred CCEEEEECC----CCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHH--HHHHHHHHHHHcCC
Confidence 455666655 334567899999989888999998866644433222 2355552 23333444555565
No 307
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=21.14 E-value=2.6e+02 Score=25.19 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=35.3
Q ss_pred chHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 57 MWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 57 ~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
.-++.++++++.|+++|.+= -|... .....+.+.+++.|+.+++..
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iT----DH~~~---------~~~~~~~~~~~~~~i~vi~G~ 62 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAIT----DHNNF---------AGYPDFYKEAKKKGIKVIPGV 62 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEE----EETTT---------TTHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEc----CCccc---------ccchHHHHHHHhcCCceEEeE
Confidence 45788999999999998873 23222 247888999999999988755
No 308
>PLN03244 alpha-amylase; Provisional
Probab=21.03 E-value=1.2e+03 Score=28.05 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.9
Q ss_pred CcchHHHHHHHHHHcCCEEEEecC
Q 009890 93 GRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 93 G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
+-.||.+|++.|+++||.|||-.=
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDvV 462 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDIV 462 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEec
Confidence 346899999999999999999853
No 309
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=20.96 E-value=1.7e+02 Score=29.60 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=36.8
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCce-eecc-CcchHHHHHHHHHHc-CCEEEEecCc
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQ-YNFE-GRYDLVKFVKLVAEA-GLYAHLRIGP 117 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~-ydF~-G~~dL~~fl~la~~~-GL~Vilr~GP 117 (523)
.++.|.+..+.+.+.|++.|++-+ .-|.... =++. ....+.++++.+++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~----~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNL----SCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEc----CCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 567888889999889999998843 2332211 0000 012456677777665 6667777654
No 310
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.96 E-value=1.6e+02 Score=30.32 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=50.6
Q ss_pred CEEEEEEE-EE-e-eCCCCCccchHHHHHHHHhCCCCEEEEccccCc------CCCC-CceeeccCcchHHHHHHHHHHc
Q 009890 38 GKRRVLIS-GS-I-HYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNL------HEPV-RNQYNFEGRYDLVKFVKLVAEA 107 (523)
Q Consensus 38 Gk~~~l~s-G~-i-Hy~R~~~~~W~d~l~k~Ka~GlN~V~tYvfWn~------HEp~-~G~ydF~G~~dL~~fl~la~~~ 107 (523)
+++++.+. |+ . .+-|+|.+.|.+.++++.+.|+.+|=+.-.=.. .+.. +...|..|..+|..+..+.+..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 45665553 33 3 456689999999999998888776654332110 0000 1235667777777788777777
Q ss_pred CCEEEEecCc
Q 009890 108 GLYAHLRIGP 117 (523)
Q Consensus 108 GL~Vilr~GP 117 (523)
.|+|-.-.||
T Consensus 253 ~l~I~~DSGp 262 (334)
T TIGR02195 253 KAVVTNDSGL 262 (334)
T ss_pred CEEEeeCCHH
Confidence 7777666665
No 311
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=20.94 E-value=5.1e+02 Score=26.99 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=79.8
Q ss_pred EEEEEEEeeCCCCCccchHHHHHHHHh-CCCCEEEEccccCcCCCCCceeecc-CcchHHHHHHHHHHcCCEEEEecCce
Q 009890 41 RVLISGSIHYPRSTPEMWPDLIQKSKD-GGLDVIETYVFWNLHEPVRNQYNFE-GRYDLVKFVKLVAEAGLYAHLRIGPY 118 (523)
Q Consensus 41 ~~l~sG~iHy~R~~~~~W~d~l~k~Ka-~GlN~V~tYvfWn~HEp~~G~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPy 118 (523)
+++-+|.+|- ==..+++++|+ +.+-+|+++|- =.+=.|++ ||. --+++++=+++|++.|..++.-|-
T Consensus 26 fVPTMGaLHe------GHlsLi~~A~~~~d~vVVSIFVN--P~QF~~~e-D~~~YPR~~e~D~~ll~~~gvD~vF~Ps-- 94 (280)
T PF02569_consen 26 FVPTMGALHE------GHLSLIRRARAENDVVVVSIFVN--PTQFGPNE-DFDKYPRTLERDLELLEKAGVDAVFAPS-- 94 (280)
T ss_dssp EEEE-SS--H------HHHHHHHHHHHHSSEEEEEE-----GGGSSTTS-HTTTS---HHHHHHHHHHTT-SEEE-----
T ss_pred EECCCchhhH------HHHHHHHHHHhCCCEEEEEECcC--cccCCCcc-hhhhCCCChHHHHHHHhccCCCEEEcCC--
Confidence 4567888882 11245666654 57778888762 11111111 333 236788999999999999998874
Q ss_pred eccccCCCCCCccccCCCCeeee---cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCccc
Q 009890 119 VCAEWNFGGFPLWLHFIPGIQFR---TDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAG 195 (523)
Q Consensus 119 i~aEw~~GG~P~WL~~~p~i~~R---t~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII~~QIENEyg~~~~~~g~~~ 195 (523)
-.|---.|.+.++...+++.-+ ..-|.+.+=+-.-+.++.++++.... .+|+.+
T Consensus 95 -~~emYP~~~~t~v~~~~~l~~~leG~~RPghF~GV~Tvv~KLf~iv~P~~a----------------------yfGeKD 151 (280)
T PF02569_consen 95 -VEEMYPEGFSTYVSVGPGLSEILEGASRPGHFRGVATVVAKLFNIVQPDRA----------------------YFGEKD 151 (280)
T ss_dssp -HHHHSTTTSTCEEEEESCHHTSTHHHHSTTHHHHHHHHHHHHHHHH--SEE----------------------EEETTS
T ss_pred -CCccCCCCCceEEEcCcccccccCCCCCcchhHHHHHHHHHHHHHhCCCEE----------------------EEechH
Confidence 2333233555555432222100 01366888888889999999984422 246666
Q ss_pred HHHHHHHHHHHHhcCCCcceEEccC
Q 009890 196 KSYIKWAAGMALSLDTGVPWVMCQQ 220 (523)
Q Consensus 196 ~~y~~~l~~~~~~~g~~vP~~~~~~ 220 (523)
-+-+.-+++|.+++++.+-++.|..
T Consensus 152 ~QQl~iIr~mv~Dl~~~v~I~~~pt 176 (280)
T PF02569_consen 152 YQQLAIIRRMVRDLNLPVEIVGCPT 176 (280)
T ss_dssp HHHHHHHHHHHHHTT-SSEEEEE--
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 6667779999999999998888854
No 312
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.89 E-value=95 Score=31.16 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=37.5
Q ss_pred cchHHHHHHHHhCCCCEEEEccccCcCCCC---CceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 56 EMWPDLIQKSKDGGLDVIETYVFWNLHEPV---RNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 56 ~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~---~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
+.+++.++.++++|.++|.+ |..+.+. +..+.- -...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 45788899999999998765 3333321 111110 013577778888899999998873
No 313
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=20.87 E-value=3.5e+02 Score=26.15 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 59 PDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
..+|+.+|+.|+++|=| +.|. ++.+.= .+..+.+.+++.||.++-
T Consensus 61 ~~DL~~Lk~~G~~~Vvt-----l~~~--~EL~~l---~Vp~L~~~~~~~Gi~~~h 105 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVT-----LLTD--HELARL---GVPDLGEAAQARGIAWHH 105 (168)
T ss_dssp HHHHHHHHHTT--EEEE------S-H--HHHHHT---T-TTHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHCCCCEEEE-----eCcH--HHHHHc---CCccHHHHHHHcCCEEEe
Confidence 56788999999999987 3332 223322 345578999999998763
No 314
>PRK10824 glutaredoxin-4; Provisional
Probab=20.78 E-value=57 Score=29.32 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=28.7
Q ss_pred ccccchhhhhhhccCCCceeeEEEeEEEecCCCccccCCCeeEEEEeecCcEEEEEEcCeeeec
Q 009890 459 AFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGE 522 (523)
Q Consensus 459 ~~~~~~llEq~~~T~D~sDYLWY~T~v~i~~~~~~~~~~~~~~L~v~s~gh~lh~FVNg~~~G~ 522 (523)
..++..+|.++++ ||- .+++..+.. ++ +....+....-+=.|||||++||-
T Consensus 33 c~~ak~lL~~~~i-----~~~----~idi~~d~~-~~---~~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 33 SAQAVQALSACGE-----RFA----YVDILQNPD-IR---AELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred HHHHHHHHHHcCC-----Cce----EEEecCCHH-HH---HHHHHHhCCCCCCeEEECCEEEcC
Confidence 4566778888753 453 245544321 11 111122233557789999999993
No 315
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=20.57 E-value=1.9e+02 Score=31.02 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=38.2
Q ss_pred HHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEEecC
Q 009890 62 IQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHLRIG 116 (523)
Q Consensus 62 l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 116 (523)
...+|++|++.|-+ .|..++--|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIvCiG 136 (355)
T PRK14905 88 PLMLKELGIELVMI-----GHSERRHVLKET-DQEENEKVLAALKHGFITLLCIG 136 (355)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccccc-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999988 777776555433 34466778899999999999997
No 316
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=20.49 E-value=9.4e+02 Score=26.10 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=83.5
Q ss_pred eeEEEecceEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHhC-CC-CEEEEccccCcCCCCCceeeccCcchHHHHHH
Q 009890 25 ANVTYDHRAVVIGGKRRVLISGSIHYPRSTPEMWPDLIQKSKDG-GL-DVIETYVFWNLHEPVRNQYNFEGRYDLVKFVK 102 (523)
Q Consensus 25 ~~vt~d~~~l~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~-Gl-N~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~ 102 (523)
..|+.-...+.--|-||-.+.+ ..-+| ++++..+++.+++.. |+ -.|+.-++|.. . .|+.++.+
T Consensus 11 ~~~~~~~w~~~~~~tRf~~f~~-~g~~r-~~~e~~~d~~~v~~L~~~~~~v~lH~~~d~------~------~d~~~~~~ 76 (378)
T TIGR02635 11 LKIETPSWAYGNSGTRFKVFHQ-EGAAR-NVFEKIEDAALVHRLTGICPTVALHIPWDR------V------EDYEELAR 76 (378)
T ss_pred cEeeccccccCCCCcccccCCC-CCCCC-CHHHHHHHHHHHHhhcCCCCceeeccCCcc------c------cCHHHHHH
Confidence 4555556666666667644322 11233 233334445555443 22 35555555522 1 37889999
Q ss_pred HHHHcCCEEE-EecCceeccccCCCCCCccccCCCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceE-eccc
Q 009890 103 LVAEAGLYAH-LRIGPYVCAEWNFGGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPII-LSQI 180 (523)
Q Consensus 103 la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~fl~~~~~~~~~i~~~ik~~~l~~~~gGpII-~~QI 180 (523)
+++++||.|. +-||=|-+ |.+ ..| .+-..|+..++..-+++++.+++.+ .| |.+.| .| +
T Consensus 77 ~l~~~GL~v~~i~p~~f~~--------~~~---~~G-SLt~pD~~vR~~AIe~~k~~idiA~--eL----Ga~~I~iW-~ 137 (378)
T TIGR02635 77 YAEELGLKIGAINPNLFQD--------DDY---KFG-SLTHPDKRIRRKAIDHLLECVDIAK--KT----GSKDISLW-L 137 (378)
T ss_pred HHHHcCCceeeeeCCccCC--------ccc---CCC-CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCeEEEe-c
Confidence 9999999987 66651111 111 112 4666788888888788888777777 22 44443 44 2
Q ss_pred c--ccccccccccCcccHHHHHHHHHHHHhcCCCcce
Q 009890 181 E--NEYGNIDSAYGAAGKSYIKWAAGMALSLDTGVPW 215 (523)
Q Consensus 181 E--NEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~ 215 (523)
- -+|... ..+.+.-+.+.+.|++.+....-++.+
T Consensus 138 ~DG~~~~g~-~~~~~a~~rl~esL~eI~~~~~~~v~~ 173 (378)
T TIGR02635 138 ADGTNYPGQ-DDFRSRKDRLEESLAEVYEHLGADMRL 173 (378)
T ss_pred CCcCcCCcc-cCHHHHHHHHHHHHHHHHHhCcCCCEE
Confidence 1 122111 112222345667777777554334443
No 317
>PRK08227 autoinducer 2 aldolase; Validated
Probab=20.43 E-value=82 Score=32.44 Aligned_cols=48 Identities=8% Similarity=0.031 Sum_probs=37.1
Q ss_pred HHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 60 DLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 60 d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
-..+.+-++|.+.|.+.++|..... -+--.+|.+..+.|++.||-+++
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E------~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYE------HQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHH------HHHHHHHHHHHHHHHHhCCcEEE
Confidence 3477788999999999999983211 11224899999999999999886
No 318
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.31 E-value=1.5e+02 Score=29.27 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCCEEEEccccC-cCCCC---Cc-eeeccCcchHHHHHHHHHHcCCEEEEec
Q 009890 59 PDLIQKSKDGGLDVIETYVFWN-LHEPV---RN-QYNFEGRYDLVKFVKLVAEAGLYAHLRI 115 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn-~HEp~---~G-~ydF~G~~dL~~fl~la~~~GL~Vilr~ 115 (523)
++.++++++.|++.|++++.-+ .|... .+ +-+|+ .+...++.|++.|+.|.+-+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~---~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLE---NAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHH---HHHHHHHHHHHCCCeEEEEE
Confidence 7889999999999999988643 22111 00 01222 67888999999999987765
No 319
>PRK09919 anti-adapter protein IraM; Provisional
Probab=20.30 E-value=1.6e+02 Score=26.73 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=11.3
Q ss_pred eeEEEeEEEecCCC
Q 009890 478 YLWYSLSTNIKADE 491 (523)
Q Consensus 478 YLWY~T~v~i~~~~ 491 (523)
=|||..++-+...+
T Consensus 30 ilWY~~d~~L~pG~ 43 (114)
T PRK09919 30 ILWYQADIFLPPGS 43 (114)
T ss_pred EEEEeeeEEeCCCC
Confidence 38999999887666
No 320
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=20.25 E-value=1.4e+02 Score=32.69 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=46.9
Q ss_pred CccchHHHHHHHHhCCCCEEEEccccCcCCCCCceeeccCcchHHHHHHHHHHcCC--------------EEEEecCcee
Q 009890 54 TPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYNFEGRYDLVKFVKLVAEAGL--------------YAHLRIGPYV 119 (523)
Q Consensus 54 ~~~~W~d~l~k~Ka~GlN~V~tYvfWn~HEp~~G~ydF~G~~dL~~fl~la~~~GL--------------~Vilr~GPyi 119 (523)
|...-+-.+-...|.|.+.--+|+ +|+|-.. ...|.+-|+.|+++|| +|...-|-||
T Consensus 107 PH~LIEGm~IA~yA~gA~~~YiYi--------RgEy~~a-~~~l~~AI~eA~~~GlLGknilGSgfdfdl~vh~GAGAYI 177 (424)
T COG1894 107 PHLLIEGMIIAAYAVGATKGYIYI--------RGEYPEA-IERLQKAIEEAYAAGLLGKNILGSGFDFDLYVHHGAGAYI 177 (424)
T ss_pred cHHHHHHHHHHHHHhccceeEEEE--------ecchHHH-HHHHHHHHHHHHHhCcccccccCCCcceEEEEecCCccee
Confidence 344556667777899998888887 5666655 5689999999999885 4556678999
Q ss_pred ccccC
Q 009890 120 CAEWN 124 (523)
Q Consensus 120 ~aEw~ 124 (523)
|+|=+
T Consensus 178 CGEET 182 (424)
T COG1894 178 CGEET 182 (424)
T ss_pred cchHH
Confidence 99843
No 321
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.20 E-value=1.2e+02 Score=33.34 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCEEEEccccC----cCCCCCceeeccCcchHHHHHHHHHHcCCEEEE
Q 009890 59 PDLIQKSKDGGLDVIETYVFWN----LHEPVRNQYNFEGRYDLVKFVKLVAEAGLYAHL 113 (523)
Q Consensus 59 ~d~l~k~Ka~GlN~V~tYvfWn----~HEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 113 (523)
++.|++||++|++.|.+.+-=. +..-.+| .+. .++.+.++.|+++|+.+..
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~~---~~~~~~i~~~~~~Gi~v~~ 341 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LTV---EIARRFTRDCHKLGIKVHG 341 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CCH---HHHHHHHHHHHHCCCeEEE
Confidence 6889999999999988855200 0000111 122 3788999999999998764
Done!