BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009892
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P4S5|CCA1_CANGA CCA tRNA nucleotidyltransferase, mitochondrial OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=CCA1 PE=1 SV=2
Length = 531
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 69 KIELTDTETKIFSCLLNTLRHFNL------ETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122
+I+LT+ ET+I + L + H+N LR+ GGWVRDKLLG+ +D+DIA++ M
Sbjct: 14 RIQLTEKETRICNLLKDYTAHYNSLHYGQEPLTLRITGGWVRDKLLGQGSHDLDIAINIM 73
Query: 123 MGSEFATKVAEYLSATGE---TAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCE 179
G EFAT + YL + P I NP++SKHLETAT KL+D+ +DFVNLR E
Sbjct: 74 SGEEFATGLNGYLLEHFDKYGVKPHSIHKIDKNPEKSKHLETATTKLFDVEVDFVNLRSE 133
Query: 180 DYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLP 239
+Y+E+SRIPT +FGT EEDA RRD T+N+LFYNI +VED T RG DL+ G + TPLP
Sbjct: 134 EYTEDSRIPTTQFGTPEEDALRRDATLNALFYNIQQDAVEDFTKRGWQDLQDGVLRTPLP 193
Query: 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMV 299
+ TFLDDPLRVLR IRF +RF+F ++ + K E+ A KISRER+G E++ ++
Sbjct: 194 ARQTFLDDPLRVLRLIRFASRFNFNIEAGVLKEMHDPEINEAFNNKISRERIGVEMEKIL 253
Query: 300 SGNQPVKAM-----THICGLTLFW 318
G P+ + TH+ + W
Sbjct: 254 VGPNPILGLKLIQRTHLENVIFLW 277
>sp|P21269|CCA1_YEAST CCA tRNA nucleotidyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CCA1 PE=1
SV=1
Length = 546
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/265 (48%), Positives = 167/265 (63%), Gaps = 15/265 (5%)
Query: 69 KIELTDTETKI------FSCLLNTLRHFNLETV-LRVAGGWVRDKLLGKDCYDIDIALDN 121
KI LT E I ++ L N H E + LR+ GGWVRDKLLG+ +D+DIA++
Sbjct: 29 KITLTKVEQNICNLLNDYTDLYNQKYHNKPEPLTLRITGGWVRDKLLGQGSHDLDIAINV 88
Query: 122 MMGSEFATKVAEYLS---ATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRC 178
M G +FAT + EYL A P I NP++SKHLETAT KL+ + +DFVNLR
Sbjct: 89 MSGEQFATGLNEYLQQHYAKYGAKPHNIHKIDKNPEKSKHLETATTKLFGVEVDFVNLRS 148
Query: 179 EDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPL 238
E Y+E SRIP + FGT EEDA RRD T+N+LFYNI+ VED T RG+ DLK G + TPL
Sbjct: 149 EKYTELSRIPKVCFGTPEEDALRRDATLNALFYNIHKGEVEDFTKRGLQDLKDGVLRTPL 208
Query: 239 PPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLM 298
P K TFLDDPLRVLR IRF +RF+F +D E+ ++ A +KISRERVG E++ +
Sbjct: 209 PAKQTFLDDPLRVLRLIRFASRFNFTIDPEVMAEMGDPQINVAFNSKISRERVGVEMEKI 268
Query: 299 VSGNQPVKAM-----THICGLTLFW 318
+ G P+ A+ H+ + FW
Sbjct: 269 LVGPTPLLALQLIQRAHLENVIFFW 293
>sp|Q9Y7U9|CCA2_SCHPO Putative CCA tRNA nucleotidyltransferase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC645.10 PE=3 SV=1
Length = 484
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 213/419 (50%), Gaps = 37/419 (8%)
Query: 69 KIELTDTETKIFSCLLNTLRHFNLETV------LRVAGGWVRDKLLGKDCYDIDIALDNM 122
+I L D E K+ + L T ++ +R+AGGWVRDKLLG D+D+ L+ +
Sbjct: 4 RIVLNDVEKKVVNLLKKTADFIESKSSSSSSLEVRLAGGWVRDKLLGLSSDDLDVTLNKV 63
Query: 123 MGSEFATKVAEYLSATGETA----PSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRC 178
G +FA + EY+ + + G + NPDQSKHLETAT+ L+DL IDFV LR
Sbjct: 64 TGVDFANSIFEYVHSLDSDSVIPYKDALGKLTVNPDQSKHLETATLSLFDLDIDFVGLRA 123
Query: 179 EDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPL 238
E Y + SRIP++ GT E DA RRD T+N+LF+NI T +ED+T RG DL+ +VTP+
Sbjct: 124 ESYDDKSRIPSVTPGTVETDALRRDFTVNTLFFNIRTEKIEDITKRGYKDLQTKVLVTPI 183
Query: 239 PPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLM 298
P +FL+DPLR+LR IRF +RF+F +D + A +V A K+S+ERVG EI+ M
Sbjct: 184 SPLQSFLEDPLRILRGIRFASRFEFTIDPSVVSAIQDPKVCKAFEKKVSKERVGEEIEKM 243
Query: 299 VSGNQPVKAMTHICGLTLFWIVFK-LPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSST 357
+ G A+ + + F LP + E ++ + E + + A +L+ S
Sbjct: 244 LKGANAKLALQLLYSTNTYQFTFDTLPAEKEFQIPKALEATESLFQSLALTFPKLMKLS- 302
Query: 358 FNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLE 417
D++ L Y AL T K IP + +D LK ++ T +N
Sbjct: 303 -EDEKIGLWLYVALIPWSSQTVMVKKKQFYIPAI--IAKDKLKLRS----TYVNQLNQCC 355
Query: 418 KFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTL 476
F + LV+ K + S + G L+R++ K W V L S +
Sbjct: 356 TFNPIFDELVNDTSTK--------------NCSSI----GSLIRQLNKSWEVVFLTSVI 396
>sp|Q9UTQ0|CCA1_SCHPO Putative CCA tRNA nucleotidyltransferase 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1093.04c PE=3
SV=2
Length = 500
Score = 212 bits (539), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 229/459 (49%), Gaps = 44/459 (9%)
Query: 70 IELTDTETKIFSCLLNTLRHFNL----ETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGS 125
+EL +TE ++ LN + E +R AGGWVRDKLL + +DID+A+D M G
Sbjct: 8 LELNETEKELSDIFLNVSKKIGQMDRKEPEVRFAGGWVRDKLLRIESHDIDVAIDCMSGF 67
Query: 126 EFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENS 185
EFA + YL+ + I +NP +SKHLETAT ++ + ID VNLR DY+ ++
Sbjct: 68 EFAQHLQSYLAQQHPDWETKVIKIDANPLKSKHLETATARIMGMDIDIVNLRHHDYTNSN 127
Query: 186 RIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFL 245
+ FGT EDA RRD TIN+LFYN+ + +VED TG+G+ DL + I TPL TF
Sbjct: 128 SSNKLVFGTPLEDALRRDATINALFYNLKSKTVEDFTGKGLVDLSNKIIRTPLVADETFG 187
Query: 246 DDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPV 305
DDPLR +R IRF ++DF + EE K + E+ L + ISRER+G E+D M+
Sbjct: 188 DDPLRAVRCIRFATKYDFNIHEETIKGLKNPELHERLRSSISRERIGVEVDKMLKHCNTN 247
Query: 306 KAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDL-----TQLIGSSTFND 360
+A+ I L +F +F PL++ + L+ + + + A DL + + +
Sbjct: 248 RALKIIHSLGMFACIFG-PLEIHTKKLQSKNIESLSLIPYAIDLFGYLQKKDVSIKNLSS 306
Query: 361 DQRRLSQYAALFLPFRN-TTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKF 419
+ + A LP+ N + + +K K +P + RDSLK I +E F
Sbjct: 307 SSKYIFWLAIATLPWYNWSILEKSKIKILPPI--LIRDSLKYSKP-------IMSQVENF 357
Query: 420 LSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWR----VALLIST 475
P ++S +V +G+ + R+ G L+RE+ WR A ++T
Sbjct: 358 FVHYPLIMSKINVLEKEGKLT------------RLGCGRLVRELGPHWRDIIDWAFFMNT 405
Query: 476 LLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGM 514
L+ + + Q D + F K I + GM
Sbjct: 406 LISNSDI--------QRLNKDEEVTWFHVLVKHIEEYGM 436
>sp|Q88W02|CCA_LACPL CCA-adding enzyme OS=Lactobacillus plantarum (strain ATCC BAA-793 /
NCIMB 8826 / WCFS1) GN=cca PE=3 SV=1
Length = 407
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 22/218 (10%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD +LGK +D+DIA S F +V + T +T V+ D
Sbjct: 31 GGCVRDTILGKPLHDVDIAT-----SAFPAEVKQLFKRTVDTGIEHGTVMIL--DHGNGY 83
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
ET T + + DF R D R + +ED RRD TIN+L N ++
Sbjct: 84 ETTTFRTESGYQDF---RRPDQVTFVR-------SLKEDLKRRDFTINALAMTANGEVID 133
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
G +AD++ G + + F +D LR++RA+RF ++ F ++ + ++A A +
Sbjct: 134 LFDG--LADMEQGILRAVGVAEERFHEDALRMMRAVRFASQLGFTIESQTEQAIADN--- 188
Query: 280 AALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLF 317
AAL AKI+ ER E + ++ G PV +T + L+
Sbjct: 189 AALLAKIAVERTRVEWEKLLMGQHPVAGLTGLLTTDLY 226
>sp|A8FEH9|CCA_BACP2 CCA-adding enzyme OS=Bacillus pumilus (strain SAFR-032) GN=cca PE=3
SV=1
Length = 400
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 110/237 (46%), Gaps = 28/237 (11%)
Query: 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA 142
+L+TL + GG VRD LLG++ DIDIA D AT +T
Sbjct: 11 ILHTLHEHGYQAYF--VGGAVRDVLLGREIGDIDIATD----------------ATPDTV 52
Query: 143 PSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPT-MRFGTA-EEDAY 200
S F D K T + + + R E E+ R P + F T+ +ED
Sbjct: 53 ESLF---EKTVDVGKEHGTVIVLHDGMSYEVTTFRTESEYEDFRRPKEVAFITSLKEDLL 109
Query: 201 RRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGAR 260
RRDLTIN++ +IN ++ + G+ D++ +I T P F +D LR++RAIRF ++
Sbjct: 110 RRDLTINAMAMDINGEIIDHVGGK--QDIERKRIQTVGDPACRFQEDALRMMRAIRFLSQ 167
Query: 261 FDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLF 317
F L E +A D+ L A IS ER E++ ++ G +A+ + L+
Sbjct: 168 LGFELAAETAEAMEKDK---HLLANISVERKKIEMEKLLKGRYCERAIKVLISTKLY 221
>sp|Q03S97|CCA_LACBA CCA-adding enzyme OS=Lactobacillus brevis (strain ATCC 367 / JCM
1170) GN=cca PE=3 SV=1
Length = 397
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 22/218 (10%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD +LGK+ +D+DIA S + ++ T +T V+ D
Sbjct: 31 GGSVRDTILGKEIHDVDIAT-----SAYPDEIKHLFKRTVDTGIEHGTVMIL--DHGTGY 83
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
ET T + + DF R D R + ED RRD TIN+L + +V
Sbjct: 84 ETTTFRSESTYTDF---RRPDQVTFVR-------SLAEDLKRRDFTINALAMKED-GTVI 132
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
DL G+ADLKH +I P+ F +D LR++RA+RF ++ +F + E A S
Sbjct: 133 DLFD-GLADLKHRQIRAVGDPQERFHEDALRMMRAVRFASQLNFTIVPETLAAMTS---H 188
Query: 280 AALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLF 317
A L KI+ ER E+ +++G P + +T + L+
Sbjct: 189 AELLRKIAVERTQVELLKLLTGQAPQQGLTDLLTTGLW 226
>sp|Q1WU19|CCA_LACS1 CCA-adding enzyme OS=Lactobacillus salivarius (strain UCC118)
GN=cca PE=3 SV=1
Length = 404
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 24/235 (10%)
Query: 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA 142
+L +R E GG VRD LLG +D+DIA S + ++ + S T +T
Sbjct: 16 ILEKIREAGFEAYF--VGGSVRDTLLGLPIHDVDIA-----SSAYPEEIKQIFSKTVDTG 68
Query: 143 PSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRR 202
V+ D E T + + +DY ++ +R + EED RR
Sbjct: 69 VEHGTVMV--LDHGTGYEITTFRTESTY--------QDYRRPDKVEFVR--SLEEDLKRR 116
Query: 203 DLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFD 262
DLTIN+L + + + DL G+ DLK+G I P+ F +D LR++RA+RFG++ D
Sbjct: 117 DLTINALAMD-DKGKIIDLFD-GLKDLKNGIIRAVGNPEERFHEDALRMMRAVRFGSQLD 174
Query: 263 FILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLF 317
F ++ + A + + L KI+ ER+ E ++ G P + + L+
Sbjct: 175 FKVELDTFNAIKKN---SHLLEKIAIERIHVEWVKLLLGKNPKQGLQEFLDTELY 226
>sp|Q03Y57|CCA_LEUMM CCA-adding enzyme OS=Leuconostoc mesenteroides subsp. mesenteroides
(strain ATCC 8293 / NCDO 523) GN=cca PE=3 SV=1
Length = 401
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 22/209 (10%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD +LGK +D+DIA S F +V T +T V+ D
Sbjct: 31 GGSVRDTMLGKTIHDVDIA-----SSAFPEEVKSLFHNTVDTGIQHGTVMVL--DHGTGY 83
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
E T ++ + DF R D+ R + EED RRD TIN+L + V
Sbjct: 84 EITTFRVESTYTDF---RRPDHVTFVR-------SLEEDLKRRDFTINALAMR-HDGEVL 132
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
DL G+ D+K G I + F +D LR++RA+RF A+ F ++ + +KA
Sbjct: 133 DLFD-GLEDMKKGVIRAVGDAEKRFTEDALRMMRALRFSAQLGFNIEADTQKALVD---L 188
Query: 280 AALAAKISRERVGTEIDLMVSGNQPVKAM 308
A AKI+ ERV E + ++ G+Q +++
Sbjct: 189 APNLAKIAVERVRVEFEKLLLGSQASQSL 217
>sp|B2G721|CCA_LACRJ CCA-adding enzyme OS=Lactobacillus reuteri (strain JCM 1112) GN=cca
PE=3 SV=1
Length = 403
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD +L + +DIDIA S + +++ + T +T V+ D
Sbjct: 31 GGCVRDTILHDEIHDIDIAT-----SAYPSEIKAIFNHTVDTGIEHGTVMIL--DHGTGY 83
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
ET T + + +DY ++ +R + ED RRD TIN+L V
Sbjct: 84 ETTTFRTESGY--------QDYRRPDKVTFVR--SLSEDLQRRDFTINALALR-EDGEVI 132
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
DL G+ DL+ I P F +D LR++RA+RF ++ DF++D K +
Sbjct: 133 DLFD-GLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKLDFVIDTATLKGIKEN--- 188
Query: 280 AALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLF 317
A L KI+ ER+ E++ ++ G PV + L+
Sbjct: 189 APLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLY 226
>sp|A5VJK7|CCA_LACRD CCA-adding enzyme OS=Lactobacillus reuteri (strain DSM 20016)
GN=cca PE=3 SV=1
Length = 403
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD +L + +DIDIA S + +++ + T +T V+ D
Sbjct: 31 GGCVRDTILHDEIHDIDIAT-----SAYPSEIKAIFNHTVDTGIEHGTVMIL--DHGTGY 83
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
ET T + + +DY ++ +R + ED RRD TIN+L V
Sbjct: 84 ETTTFRTESGY--------QDYRRPDKVTFVR--SLSEDLQRRDFTINALALR-EDGEVI 132
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
DL G+ DL+ I P F +D LR++RA+RF ++ DF++D K +
Sbjct: 133 DLFD-GLEDLQKHLIKAVGNPNERFHEDALRMMRAVRFASKLDFVIDTATLKGIKEN--- 188
Query: 280 AALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLF 317
A L KI+ ER+ E++ ++ G PV + L+
Sbjct: 189 APLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLY 226
>sp|Q8Z9C3|PCNB_SALTI Poly(A) polymerase OS=Salmonella typhi GN=pcnB PE=3 SV=2
Length = 465
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 36/185 (19%)
Query: 98 VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGET---APSGFGVIPSNPD 154
+ GG VRD LLGK D D+ + + K+ G A FG
Sbjct: 64 LVGGGVRDLLLGKKPKDFDVTTN--ATPDQVRKLFRNCRLVGRRFRLAHVMFG------- 114
Query: 155 QSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMR-----------FGTAEEDAYRRD 203
+ +E AT + ++ + SE+ R + R FG+ EEDA RRD
Sbjct: 115 -PEIIEVATFRGHN-----------EGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRRD 162
Query: 204 LTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDF 263
TINSL+Y++ +V D G G+ DL+ G I P+ + +DP+R+LRA+RF A+ +
Sbjct: 163 FTINSLYYSVADFTVRDYVG-GMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNM 221
Query: 264 ILDEE 268
+ E
Sbjct: 222 RISPE 226
>sp|P44439|PCNB_HAEIN Probable poly(A) polymerase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1
Length = 452
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 98 VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGET---APSGFGVIPSNPD 154
+ GG +RD LLGK D D+A N + G A FG
Sbjct: 52 IVGGCIRDLLLGKKPKDFDVAT-NARPEQIQNIFQRQCRLVGRRFRLAHIMFG------- 103
Query: 155 QSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMR----FGTAEEDAYRRDLTINSLF 210
+E AT + + + R E+ ++ S + +GT E+DA RRD T+N+L+
Sbjct: 104 -RDIIEVATFR-----ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALY 157
Query: 211 YNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDE 267
YN +++ D GI DLK GK+ P + +DP+R+LR+IRF A+ D L++
Sbjct: 158 YNPQDNTLRDYF-EGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEK 213
>sp|Q9CFC2|CCA_LACLA CCA-adding enzyme OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=cca PE=3 SV=2
Length = 398
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LLG++ +D+DIA S + ++ + T + G ++ + +++H
Sbjct: 31 GGSVRDILLGREIHDVDIA-----TSAYPEEIKDIFPYTIDVGIEHGTVLVLAGKSEAEH 85
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + + D+ D+ + R ED RRD TIN+ ++N +
Sbjct: 86 YEITTFRTESKYTDYRRPDHVDFVRDLR----------EDLKRRDFTINAFACDVNGQII 135
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ G + DLK ++ F +D LR++RA+RF A DF ++ + A
Sbjct: 136 DLFDG--LTDLKERRLTAVGSALERFNEDALRIMRAMRFAATLDFQIENKTFLAMCE--- 190
Query: 279 KAALAAKISRERVGTEIDLMVSGNQPVKAMT 309
A L KIS ER+ E D ++ G +T
Sbjct: 191 SAHLLEKISVERIFIEFDKLLLGQDWRNGLT 221
>sp|Q02Y22|CCA_LACLS CCA-adding enzyme OS=Lactococcus lactis subsp. cremoris (strain
SK11) GN=cca PE=3 SV=1
Length = 402
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LLG++ +D+DIA S + ++ + T + G ++ + +++H
Sbjct: 31 GGSVRDVLLGREIHDVDIA-----TSAYPEEIKDIFPYTIDVGIEHGTVLVLAGKSEAEH 85
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + + D+ D+ + R ED RRD T+N+ + +
Sbjct: 86 YEITTFRTESKYTDYRRPDHVDFVRDLR----------EDLKRRDFTVNAFACDFEGQII 135
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
DL G+ DLK ++ F +D LR++RA+RF + DF ++E K ++
Sbjct: 136 -DLFD-GLTDLKERRLTAVGSALERFNEDALRIMRAMRFASTLDFKIEE---KTFSAMRE 190
Query: 279 KAALAAKISRERVGTEIDLMVSGNQPVKAMT 309
++ L KIS ER+ E+D ++ G++ +T
Sbjct: 191 RSHLLEKISVERIFIELDKLLLGSEWRNGLT 221
>sp|Q8ZRQ8|PCNB_SALTY Poly(A) polymerase OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=pcnB PE=3 SV=2
Length = 465
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 36/185 (19%)
Query: 98 VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGET---APSGFGVIPSNPD 154
+ GG VRD LLGK D D+ + + K+ G A FG
Sbjct: 64 LVGGGVRDLLLGKKPKDFDVTTNAT--PDQVRKLFRNCRLVGRRFRLAHVMFG------- 114
Query: 155 QSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMR-----------FGTAEEDAYRRD 203
+ +E AT + + + SE+ R + R FG+ EEDA RRD
Sbjct: 115 -PEIIEVATFRGH-----------HEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQRRD 162
Query: 204 LTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDF 263
TINSL+Y++ +V D G G+ DL+ G I P+ + +DP+R+LRA+RF A+ +
Sbjct: 163 FTINSLYYSVADFTVRDYVG-GMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNM 221
Query: 264 ILDEE 268
+ E
Sbjct: 222 HISPE 226
>sp|C5D3B5|CCA_GEOSW CCA-adding enzyme OS=Geobacillus sp. (strain WCH70) GN=cca PE=3
SV=1
Length = 404
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 28/237 (11%)
Query: 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA 142
++ TL+ E GG VRD LL ++ DIDIA S +V +
Sbjct: 11 IIQTLQQHGYEAYF--VGGAVRDLLLNREIGDIDIAT-----SALPDEVMQ--------- 54
Query: 143 PSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIP--TMRFGTAEEDAY 200
+ P D T + + + R E E+ R P + ED
Sbjct: 55 -----LFPKTIDIGSQHGTVVVVHNGISYEVTTFRTESEYEDYRRPGAVTFVRSLYEDLQ 109
Query: 201 RRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGAR 260
RRD T+N++ + ++ G+ + + I T PKA F +D LR++RAIRF +
Sbjct: 110 RRDFTMNAIAMDAEGKLIDPFGGQ--EAIANRIICTVGDPKARFSEDALRMMRAIRFVGQ 167
Query: 261 FDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLF 317
F LDEE K+A + AAL A IS ER+ E + ++ G +A++ + LF
Sbjct: 168 LGFSLDEETKQAIIEN---AALLAHISVERMTMEFEKLLEGPFASRALSLLVETGLF 221
>sp|A2RJT1|CCA_LACLM CCA-adding enzyme OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=cca PE=3 SV=1
Length = 402
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LLG++ +D+DIA S + ++ + T + G ++ + +++H
Sbjct: 31 GGSVRDVLLGREIHDVDIA-----TSAYPEEIKDIFPYTIDVGIEHGTVLVLAGKSEAEH 85
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + + D+ D+ + R ED RRD T+N+ + +
Sbjct: 86 YEITTFRTESKYTDYRRPDHVDFVRDLR----------EDLKRRDFTVNAFACDFEGQII 135
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
DL G+ DLK ++ F +D LR++RA+RF + DF ++E K ++
Sbjct: 136 -DLFD-GLTDLKERRLTAVGSALERFNEDALRIMRAMRFASTLDFKIEE---KTFSAMRE 190
Query: 279 KAALAAKISRERVGTEIDLMVSGNQPVKAMT 309
++ L KIS ER+ E+D ++ G++ +T
Sbjct: 191 RSHLLEKISVERIFIELDKLLLGSEWRNGLT 221
>sp|Q03F94|CCA_PEDPA CCA-adding enzyme OS=Pediococcus pentosaceus (strain ATCC 25745 /
183-1w) GN=cca PE=3 SV=1
Length = 396
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD LL K +D+DIA S + ++ T +T V+ + +
Sbjct: 26 GGSVRDTLLNKPIHDVDIA-----SSAYPAEIKHIFKKTVDTGIEHGTVMVIHDGEG--Y 78
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
E T + + DF R D R + +ED RRD TIN+ + + ++
Sbjct: 79 EVTTFRTESGYQDF---RRPDQVTFVR-------SLKEDLMRRDFTINAFALKEDRTVID 128
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
G ++DL+H I P F +D LR++RA+RF ++ DF ++ + KA + +
Sbjct: 129 IFDG--LSDLEHKIIRAVGDPHERFHEDALRMMRAVRFASQLDFKIEAKTLKAIEENNM- 185
Query: 280 AALAAKISRERVGTEIDLMVSGNQPVKAM 308
L KIS ER+ E + M+ G++P + +
Sbjct: 186 --LLGKISVERILVEFEKMMLGSKPNRGL 212
>sp|P0ABF1|PCNB_ECOLI Poly(A) polymerase OS=Escherichia coli (strain K12) GN=pcnB PE=1
SV=2
Length = 465
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 192 FGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRV 251
FG+ EEDA RRD TINSL+Y++ +V D G G+ DLK G I P+ + +DP+R+
Sbjct: 151 FGSIEEDAQRRDFTINSLYYSVADFTVRDYVG-GMKDLKDGVIRLIGNPETRYREDPVRM 209
Query: 252 LRAIRFGARFDFILDEE 268
LRA+RF A+ + E
Sbjct: 210 LRAVRFAAKLGMRISPE 226
>sp|P0ABF2|PCNB_ECOL6 Poly(A) polymerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=pcnB PE=3 SV=2
Length = 465
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 192 FGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRV 251
FG+ EEDA RRD TINSL+Y++ +V D G G+ DLK G I P+ + +DP+R+
Sbjct: 151 FGSIEEDAQRRDFTINSLYYSVADFTVRDYVG-GMKDLKDGVIRLIGNPETRYREDPVRM 209
Query: 252 LRAIRFGARFDFILDEE 268
LRA+RF A+ + E
Sbjct: 210 LRAVRFAAKLGMRISPE 226
>sp|P0ABF3|PCNB_ECO57 Poly(A) polymerase OS=Escherichia coli O157:H7 GN=pcnB PE=3 SV=2
Length = 465
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 192 FGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRV 251
FG+ EEDA RRD TINSL+Y++ +V D G G+ DLK G I P+ + +DP+R+
Sbjct: 151 FGSIEEDAQRRDFTINSLYYSVADFTVRDYVG-GMKDLKDGVIRLIGNPETRYREDPVRM 209
Query: 252 LRAIRFGARFDFILDEE 268
LRA+RF A+ + E
Sbjct: 210 LRAVRFAAKLGMRISPE 226
>sp|Q1JHE0|CCA_STRPD CCA-adding enzyme OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=cca PE=3 SV=1
Length = 402
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 24/198 (12%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LLG+ +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLGRPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DLK ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEATTFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEID 296
+ L KIS ER TE D
Sbjct: 188 HSPLLEKISVERSFTEFD 205
>sp|B3WE84|CCA_LACCB CCA-adding enzyme OS=Lactobacillus casei (strain BL23) GN=cca PE=3
SV=1
Length = 398
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 24/233 (10%)
Query: 69 KIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFA 128
+++LT + K +L + E GG VRD +LG +D+DIA S +
Sbjct: 2 RLDLTQPDFKAAIPILKKIEAAGYEAYF--VGGSVRDAILGLPIHDVDIA-----SSAYP 54
Query: 129 TKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIP 188
++ T +T V+ D E T + + DF R D+ R
Sbjct: 55 AEIKRIFKRTADTGIEHGTVMVL--DHGTGYEVTTFRTESRYQDF---RRPDHVTFVR-- 107
Query: 189 TMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDP 248
+ ED RRD TIN+L + ++ DL G+ DL+H ++ P F +D
Sbjct: 108 -----SLAEDLKRRDFTINALAVR-HDGTIIDLFD-GLKDLQHHQLRAVGNPHERFHEDA 160
Query: 249 LRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSG 301
LR++RA+RF ++ F + E KAA +D K L IS ERV E + +++G
Sbjct: 161 LRMMRAVRFESQLGFGI-EPATKAAIADNAK--LLVHISVERVAAEFNRLLTG 210
>sp|Q039G0|CCA_LACC3 CCA-adding enzyme OS=Lactobacillus casei (strain ATCC 334) GN=cca
PE=3 SV=1
Length = 398
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 24/233 (10%)
Query: 69 KIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFA 128
+++LT + K +L + E GG VRD +LG +D+DIA S +
Sbjct: 2 RLDLTQPDFKAAIPILKKIEAAGYEAYF--VGGSVRDAILGLPIHDVDIA-----SSAYP 54
Query: 129 TKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIP 188
++ T +T V+ D E T + + DF R D+ R
Sbjct: 55 AEIKRIFKRTADTGIEHGTVMVL--DHGTGYEVTTFRTESRYQDF---RRPDHVTFVR-- 107
Query: 189 TMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDP 248
+ ED RRD TIN+L + ++ DL G+ DL+H ++ P F +D
Sbjct: 108 -----SLAEDLKRRDFTINALAVR-HDGTIIDLFD-GLKDLQHHQLRAVGNPHERFHEDA 160
Query: 249 LRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSG 301
LR++RA+RF ++ F + E KAA +D K L IS ERV E + +++G
Sbjct: 161 LRMMRAVRFESQLGFGI-EPATKAAIADNAK--LLVHISVERVAAEFNRLLTG 210
>sp|Q8K1J6|TRNT1_MOUSE CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Mus musculus
GN=Trnt1 PE=2 SV=1
Length = 434
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 21/218 (9%)
Query: 96 LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155
LR+AGG VRD L G D+D A + T++ E + G + N
Sbjct: 59 LRIAGGAVRDLLNGVKPQDVDFAT-----TATPTQMKEMFQSAG--------IRMINNKG 105
Query: 156 SKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTA-EEDAYRRDLTINSLFYNIN 214
KH T T +L++ + LR D + + R + F T ++DA RRDLTINS+F +
Sbjct: 106 EKH-GTITARLHEENFEVTTLRI-DVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFD 163
Query: 215 TSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARF-DFILDEELKKAA 273
+ + G ADLK+ K+ K +D LR+LR RF R D D + +
Sbjct: 164 GTLFDYFN--GYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHETLE 221
Query: 274 ASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHI 311
A E LA IS ER+ E+ +++G+ V + H+
Sbjct: 222 AIAENAKGLAG-ISGERIWVELKKILTGDH-VNHLIHL 257
>sp|Q03M28|CCA_STRTD CCA-adding enzyme OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=cca PE=3 SV=1
Length = 402
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDALLNRPIHDVDIA-----SSSYPEETKQIFERTVDIGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S + +R + EED RRD T+N+ N N +
Sbjct: 83 YEVTTFRTEDVYVD--------YRRPSSVSFVR--SLEEDLKRRDFTVNAFALNENAEVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ G +ADL + + + F +D LR++R +RF A DF ++E+ +A S
Sbjct: 133 DKFNG--LADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDFDIEEKTFEAMTS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
A L KIS ER E D ++
Sbjct: 188 HAFLLEKISIERSFIEFDKLL 208
>sp|Q5M5P1|CCA_STRT2 CCA-adding enzyme OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=cca PE=3 SV=1
Length = 402
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDALLNRPIHDVDIA-----SSSYPEETKQIFERTVDIGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S + +R + EED RRD T+N+ N N +
Sbjct: 83 YEVTTFRTEDVYVD--------YRRPSSVSFVR--SLEEDLKRRDFTVNAFALNENAEVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ G +ADL + + + F +D LR++R +RF A DF ++E+ +A S
Sbjct: 133 DKFNG--LADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDFDIEEKTFEAMTS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
A L KIS ER E D ++
Sbjct: 188 HAFLLEKISIERSFIEFDKLL 208
>sp|Q5M153|CCA_STRT1 CCA-adding enzyme OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=cca PE=3 SV=1
Length = 402
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDALLNRPIHDVDIA-----SSSYPEETKQIFERTVDIGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S + +R + EED RRD T+N+ N N +
Sbjct: 83 YEVTTFRTEDVYVD--------YRRPSSVSFVR--SLEEDLKRRDFTVNAFALNENAEVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ G +ADL + + + F +D LR++R +RF A DF ++E+ +A S
Sbjct: 133 DKFNG--LADLDNRVLRAVGKAEERFNEDALRIMRGLRFAASLDFDIEEKTFEAMTS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
A L KIS ER E D ++
Sbjct: 188 HAFLLEKISIERSFIEFDKLL 208
>sp|Q96Q11|TRNT1_HUMAN CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Homo sapiens
GN=TRNT1 PE=1 SV=2
Length = 434
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 96 LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155
LR+AGG VRD L G DID A + T++ E + G + G
Sbjct: 59 LRIAGGAVRDLLNGVKPQDIDFAT-----TATPTQMKEMFQSAGIRMINNRG-------- 105
Query: 156 SKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTA-EEDAYRRDLTINSLFYNIN 214
KH T T +L++ + LR D + + R + F T ++DA RRDLTINS+F +
Sbjct: 106 EKH-GTITARLHEENFEITTLRI-DVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFD 163
Query: 215 TSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARF-DFILDEELKKAA 273
+ + G DLK+ K+ K +D LR+LR RF R D D + +
Sbjct: 164 GTLFDYFN--GYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLE 221
Query: 274 ASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHI 311
A E LA IS ER+ E+ ++ GN V + H+
Sbjct: 222 AIAENAKGLAG-ISGERIWVELKKILVGNH-VNHLIHL 257
>sp|A2RF34|CCA_STRPG CCA-adding enzyme OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=cca PE=3 SV=1
Length = 402
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DLK ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|Q8P1E3|CCA_STRP8 CCA-adding enzyme OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=cca PE=3 SV=1
Length = 402
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DLK ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|Q5XCN7|CCA_STRP6 CCA-adding enzyme OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=cca PE=3 SV=1
Length = 402
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DLK ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|B9DRX9|CCA_STRU0 CCA-adding enzyme OS=Streptococcus uberis (strain ATCC BAA-854 /
0140J) GN=cca PE=3 SV=1
Length = 403
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD LL + +D+DIA S + + S T + V+ D
Sbjct: 31 GGGVRDILLDRPIHDVDIAT-----SSYPEETKAIFSRTVDIGIEHGTVLVLENDAE--Y 83
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
E T + D+++D Y S + +R + EED RRD T+N+L + ++
Sbjct: 84 EITTFRTEDIYVD--------YRRPSNVSFVR--SLEEDLKRRDFTVNALALDETGQVID 133
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
G+ DLK ++ + F +D LR++R RF A DF +++E +A +
Sbjct: 134 KF--HGLQDLKRKELRAVGKAEERFQEDALRIMRGFRFAASLDFKIEDETFEAMKT---H 188
Query: 280 AALAAKISRERVGTEID 296
A L KIS ER E+D
Sbjct: 189 AHLLQKISVERSFIELD 205
>sp|Q9A0A5|CCA_STRP1 CCA-adding enzyme OS=Streptococcus pyogenes serotype M1 GN=cca PE=3
SV=2
Length = 402
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 24/198 (12%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDIYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DLK ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLKQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAITFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEID 296
+ L KIS ER TE D
Sbjct: 188 HSPLLEKISVERSFTEFD 205
>sp|P0DA19|CCA_STRPQ CCA-adding enzyme OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=cca PE=3 SV=1
Length = 402
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DL+ ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|Q48U40|CCA_STRPM CCA-adding enzyme OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=cca PE=3 SV=1
Length = 402
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DL+ ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|Q1JM96|CCA_STRPC CCA-adding enzyme OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=cca PE=3 SV=1
Length = 402
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DL+ ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|Q1JCB2|CCA_STRPB CCA-adding enzyme OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=cca PE=3 SV=1
Length = 402
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DL+ ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|P0DA18|CCA_STRP3 CCA-adding enzyme OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=cca PE=3 SV=1
Length = 402
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DL+ ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|Q38WX5|CCA_LACSS CCA-adding enzyme OS=Lactobacillus sakei subsp. sakei (strain 23K)
GN=cca PE=3 SV=1
Length = 397
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD LLG +D+DIA S + ++ + T +T V+ D
Sbjct: 31 GGSVRDNLLGLPIHDVDIAT-----SAYPAEIKQIFKRTVDTGIQHGTVMIL--DHGNGY 83
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
E T + + DF R D R + EED RRD TIN+L + ++
Sbjct: 84 EVTTFRTETGYQDF---RRPDSVTFVR-------SLEEDLKRRDFTINALAMRADGEIID 133
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
G IADLK KI F +D LR++RA+RF ++ F + E + A+ E
Sbjct: 134 LFDG--IADLKAHKIRAVGVADERFHEDALRMMRAVRFESQLGFSVTETTQ---AAIEKH 188
Query: 280 AALAAKISRERVGTEIDLMVSG 301
AAL KI+ ER+ E ++ G
Sbjct: 189 AALLEKIAIERIHVEFMKLMQG 210
>sp|Q1J760|CCA_STRPF CCA-adding enzyme OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=cca PE=3 SV=1
Length = 402
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + + T + G ++ N +
Sbjct: 31 GGSVRDVLLERPIHDVDIAT-----SSYPEETKAIFNRTVDVGIEHGTVLVLENGGE--- 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD T+N+L + N +
Sbjct: 83 YEITTFRTEDVYVD--------YRRPSQVSFVR--SLEEDLKRRDFTVNALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ RG+ DL+ ++ + F +D LR++R RF A DF ++ +A S
Sbjct: 133 DKF--RGLIDLEQKRLRAVGKAEERFEEDALRIMRGFRFAASLDFDIEAATFEAMRS--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
+ L KIS ER TE D ++
Sbjct: 188 HSPLLEKISVERSFTEFDKLL 208
>sp|Q834S5|CCA_ENTFA CCA-adding enzyme OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=cca PE=3 SV=1
Length = 406
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 22/202 (10%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD LL K +D+DIA S + ++ + T + V+ DQ
Sbjct: 31 GGSVRDALLNKPIHDVDIAT-----SAYPEEIKQIFKRTVDVGIEHGTVLVLMEDQ--QY 83
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
E T + + DF R D R + +ED RRD TIN+L + +T +
Sbjct: 84 EVTTFRTESTYQDF---RRPDEVTFVR-------SLKEDLKRRDFTINALALD-STGEII 132
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
DL GI DL + I P F +D LR++R +RF ++ DF ++E K AA E
Sbjct: 133 DLFD-GIEDLTNQTIRAVGNPHERFHEDALRMMRGLRFASQLDFKIEE--KTLAAIAEFH 189
Query: 280 AALAAKISRERVGTEIDLMVSG 301
L KIS ER+ E M+ G
Sbjct: 190 -PLLEKISVERITIEFVKMLLG 210
>sp|A8AX96|CCA_STRGC CCA-adding enzyme OS=Streptococcus gordonii (strain Challis / ATCC
35105 / CH1 / DL1 / V288) GN=cca PE=3 SV=1
Length = 399
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + T + G ++ N ++
Sbjct: 31 GGSVRDALLQRPIHDVDIA-----SSSYPEETKRIFDRTVDVGIEHGTVLVLEN---NRE 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD TIN+L + N +
Sbjct: 83 YEVTTFRTEDVYVD--------YRRPSKVSFVR--SLEEDLKRRDFTINALALDENGQLI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
+ +G+ DL++ + P F +D LR++R RF A +F L+++ A
Sbjct: 133 DLF--QGLDDLENRILRAVGTPAERFNEDALRIMRGFRFQATLNFDLEQDTLSAMTD--- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
A L KIS ER+ E D ++
Sbjct: 188 CAPLLEKISVERIFIEFDKLL 208
>sp|Q9KC89|CCA_BACHD CCA-adding enzyme OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=cca PE=3 SV=1
Length = 375
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 43/237 (18%)
Query: 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA 142
+++ LR E + GG VRD +G+ D+D+ SA+ E
Sbjct: 11 IVSELRDHGFEAY--IVGGAVRDYHIGRKPKDVDVVT----------------SASPEEI 52
Query: 143 PSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRR 202
+ + P ++ +T T+ L + I+ + T+R G+ E+D R
Sbjct: 53 RTLY---PHAFQINRQFQTLTVHLQKVAIE--------------VSTLRGGSIEDDLCSR 95
Query: 203 DLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFD 262
D TIN++ +N + D TG G DL++G ++ P+A F +DPLR+LRA RF +
Sbjct: 96 DFTINAMALAMNGDII-DPTG-GKTDLENG-VIRSFHPEARFKEDPLRMLRAPRFASELG 152
Query: 263 FILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKA--MTHICGLTLF 317
F + K A + + +L A ++ ERV E+ ++ G + H GL F
Sbjct: 153 FTV---AKGTAEAIKGSCSLLADVAVERVEKELTQLMIGTHRSSGWCLLHETGLYPF 206
>sp|Q8Y5Z8|CCA_LISMO CCA-adding enzyme OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=cca PE=3 SV=1
Length = 393
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 26/211 (12%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD LL + D+DIA S F +V E +T +T G+
Sbjct: 26 GGSVRDYLLNRTISDVDIAT-----SAFPEEVKEIFQSTYDT-----GIAHG-------- 67
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPT-MRF-GTAEEDAYRRDLTINSLFYNINTSS 217
T T++ + + + R E E+ R P+ ++F + EED RRD T+N++ + + +
Sbjct: 68 -TVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHFAL 126
Query: 218 VEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDE 277
+ +G+ K K V + F +D LR++R +RF ++ DF LD E +KA S
Sbjct: 127 HDPFSGQEAIKNKAIKAVGKASER--FHEDALRMMRGVRFLSQLDFQLDSETEKALES-- 182
Query: 278 VKAALAAKISRERVGTEIDLMVSGNQPVKAM 308
+ L S ER+ E M+ G +AM
Sbjct: 183 -QIGLLQHTSVERITVEWLKMIKGPAIRRAM 212
>sp|Q5FKF0|CCA_LACAC CCA-adding enzyme OS=Lactobacillus acidophilus (strain ATCC 700396
/ NCK56 / N2 / NCFM) GN=cca PE=3 SV=1
Length = 399
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 26/210 (12%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD LL + +DIDI S + +V E + +T G+ KH
Sbjct: 32 GGSVRDVLLDRHVHDIDITT-----SAYPEEVKELFEKSIDT-----GI--------KH- 72
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIP--TMRFGTAEEDAYRRDLTINSLFYNINTSS 217
T T+ + R E ++ R P +ED RRD TIN+L +I
Sbjct: 73 GTVTVLYEGESYEITTFRTESGYQDFRRPDHVTFVQNLDEDLKRRDFTINALAMDIRGQI 132
Query: 218 VEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDE 277
++ G + DLK I P+ F +D LR++RA+RF ++ +F L+E+ ++A +
Sbjct: 133 IDLFNG--VEDLKKRVIRAVGNPETRFHEDALRMMRAVRFMSQLEFKLEEKTERAIKDNH 190
Query: 278 VKAALAAKISRERVGTEIDLMVSGNQPVKA 307
L KIS ER+ E M G+ +A
Sbjct: 191 ---ELLKKISIERIREEFVKMGLGSHSRQA 217
>sp|Q92AA3|CCA_LISIN CCA-adding enzyme OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=cca PE=3 SV=1
Length = 393
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 23/207 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD LL + D+DIA S F +V E +T +T + G + ++ +
Sbjct: 26 GGSVRDYLLNRPISDVDIAT-----SAFPEEVKEIFQSTYDTGIA-HGTVTVRENKECY- 78
Query: 160 ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVE 219
E T + + ED+ S + +R + EED RRD T+N++ + N +
Sbjct: 79 EVTTFRTEGTY--------EDFRRPSEVTFIR--SLEEDLLRRDFTMNAIAMDENFKLHD 128
Query: 220 DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVK 279
+G+ K K V + F +D LR++RA+RF ++ DF LD+E + A + +
Sbjct: 129 PFSGQLAIQNKEIKAVGKASER--FHEDALRMMRAVRFLSQLDFQLDKETETALTN---Q 183
Query: 280 AALAAKISRERVGTEIDLMVSGNQPVK 306
AL S ER+ E M+ G Q VK
Sbjct: 184 IALLQHTSVERITVEWIKMIKG-QAVK 209
>sp|P42977|CCA_BACSU CCA-adding enzyme OS=Bacillus subtilis (strain 168) GN=cca PE=3
SV=2
Length = 397
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 26/220 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHL 159
GG VRD + + D+DIA D +V T + +I D++ +
Sbjct: 26 GGAVRDSYMKRTIGDVDIATDAA-----PDQVERLFQRTVDVGKEHGTIIVLWEDETYEV 80
Query: 160 ETATMKLYDLWIDFVNLRCE-DYSENSRIPTMRF-GTAEEDAYRRDLTINSLFYNINTSS 217
T R E DY + R ++F + EED RRDLTIN++ +
Sbjct: 81 TT--------------FRTESDYVDFRRPSEVQFISSLEEDLKRRDLTINAMAMTADGKV 126
Query: 218 VEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDE 277
++ G+ D+ I T P+ F +D LR+LRA+RF ++ F L E ++A A ++
Sbjct: 127 LDYFGGK--KDIDQKVIRTVGKPEDRFQEDALRMLRAVRFMSQLGFTLSPETEEAIAKEK 184
Query: 278 VKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLF 317
+L + +S ER E + ++ G +A+ + L+
Sbjct: 185 ---SLLSHVSVERKTIEFEKLLQGRASRQALQTLIQTRLY 221
>sp|A3CMU4|CCA_STRSV CCA-adding enzyme OS=Streptococcus sanguinis (strain SK36) GN=cca
PE=3 SV=1
Length = 399
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 24/201 (11%)
Query: 100 GGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-PSGFGVIPSNPDQSKH 158
GG VRD LL + +D+DIA S + + T + G ++ N ++
Sbjct: 31 GGSVRDALLQRPIHDVDIA-----SSSYPEETKRIFDRTVDVGIEHGTVLVLEN---NRE 82
Query: 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSV 218
E T + D+++D Y S++ +R + EED RRD TIN+L + N +
Sbjct: 83 YEVTTFRTEDVYVD--------YRRPSKVSFVR--SLEEDLKRRDFTINALALDENGQVI 132
Query: 219 EDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEV 278
DL +G+ DL++ + F +D LR++R RF A DF L+++ AA D
Sbjct: 133 -DLF-QGLDDLENQILRAVGTAAERFNEDALRIMRGFRFQAALDFDLEQD-TFAAMKD-- 187
Query: 279 KAALAAKISRERVGTEIDLMV 299
A L KIS ER+ E D ++
Sbjct: 188 CAPLLEKISVERIFIEFDKLL 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,897,179
Number of Sequences: 539616
Number of extensions: 7517637
Number of successful extensions: 18608
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 17976
Number of HSP's gapped (non-prelim): 503
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)