Query 009892
Match_columns 523
No_of_seqs 369 out of 1813
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aql_A Poly(A) polymerase; tra 100.0 2.1E-57 7.3E-62 481.6 16.4 316 67-419 12-353 (415)
2 3h38_A TRNA nucleotidyl transf 100.0 2.3E-55 7.7E-60 468.3 28.3 307 70-419 13-323 (441)
3 1vfg_A A-adding enzyme, poly A 100.0 3.4E-55 1.1E-59 462.2 25.9 294 84-420 3-301 (390)
4 1ou5_A TRNA CCA-adding enzyme, 100.0 4.9E-55 1.7E-59 467.6 20.0 287 72-418 55-346 (448)
5 1miw_A TRNA CCA-adding enzyme; 100.0 1.7E-54 5.9E-59 458.4 21.4 279 82-418 10-290 (404)
6 2la3_A Uncharacterized protein 93.0 1.1 3.8E-05 42.1 12.3 121 81-236 22-156 (191)
7 4e8j_A Lincosamide resistance 92.3 0.23 7.7E-06 45.5 6.4 52 82-139 13-67 (161)
8 3djb_A Hydrolase, HD family; a 90.2 0.32 1.1E-05 46.8 5.4 73 338-416 25-100 (223)
9 3dto_A BH2835 protein; all alp 89.2 0.49 1.7E-05 45.4 5.9 73 338-416 25-100 (223)
10 2fcl_A Hypothetical protein TM 89.1 1.2 4.3E-05 40.8 8.3 59 74-139 16-76 (169)
11 3b57_A LIN1889 protein; Q92AN1 88.9 0.36 1.2E-05 45.6 4.7 51 362-416 47-100 (209)
12 3nyb_A Poly(A) RNA polymerase 87.6 3.5 0.00012 41.5 11.3 71 67-139 29-107 (323)
13 2qgs_A Protein Se1688; alpha-h 86.7 0.62 2.1E-05 44.5 4.8 50 362-416 48-100 (225)
14 2pq7_A Predicted HD superfamil 86.5 0.28 9.7E-06 46.5 2.3 55 362-417 55-113 (220)
15 3gw7_A Uncharacterized protein 85.6 0.19 6.5E-06 48.9 0.6 75 339-416 26-107 (239)
16 2pjq_A Uncharacterized protein 84.0 0.7 2.4E-05 44.4 3.8 51 362-416 52-105 (231)
17 4e8f_A Poly(A) RNA polymerase 70.7 22 0.00074 36.9 10.7 71 65-137 50-127 (405)
18 1q79_A Poly(A) polymerase alph 57.3 40 0.0014 36.1 9.8 77 92-177 93-172 (514)
19 3ccg_A HD superfamily hydrolas 55.8 7.9 0.00027 35.5 3.6 17 364-380 43-59 (190)
20 2bcq_A DNA polymerase lambda; 53.6 33 0.0011 34.7 8.0 53 68-125 145-198 (335)
21 2hek_A Hypothetical protein; p 53.0 21 0.00071 36.7 6.5 50 364-415 75-140 (371)
22 2hhp_A Poly(A) polymerase; tem 51.2 48 0.0017 35.7 9.3 77 93-178 81-160 (530)
23 2ikf_A RNA uridylyl transferas 49.6 92 0.0031 31.3 10.7 45 74-120 47-92 (353)
24 1jms_A Terminal deoxynucleotid 46.0 34 0.0012 35.2 6.8 58 77-138 180-243 (381)
25 3pq1_A Poly(A) RNA polymerase; 45.0 1.2E+02 0.0041 32.1 10.9 55 65-121 140-198 (464)
26 1no5_A Hypothetical protein HI 44.9 28 0.00095 29.1 5.0 48 70-122 7-54 (114)
27 2o08_A BH1327 protein; putativ 42.4 12 0.00041 34.2 2.5 15 364-378 42-56 (188)
28 2ihm_A POL MU, DNA polymerase 39.6 37 0.0013 34.6 5.9 45 77-125 160-205 (360)
29 1ylq_A Putative nucleotidyltra 37.7 37 0.0013 27.4 4.5 39 80-121 4-44 (96)
30 2fmp_A DNA polymerase beta; nu 35.2 60 0.0021 32.6 6.6 42 77-122 156-198 (335)
31 4fh3_A Poly(A) RNA polymerase 32.0 48 0.0016 33.0 5.2 54 66-121 23-80 (349)
32 1wot_A Putative minimal nucleo 31.6 50 0.0017 26.7 4.4 42 77-121 10-51 (98)
33 2pbe_A AAD6, aminoglycoside 6- 31.1 88 0.003 30.8 6.9 53 75-128 5-58 (294)
34 2rff_A Putative nucleotidyltra 28.4 67 0.0023 26.8 4.7 42 79-122 19-60 (111)
35 3b0x_A DNA polymerase beta fam 23.9 99 0.0034 33.3 6.2 112 77-210 164-284 (575)
36 2ba3_A NIKA; dimer, bacterial 23.7 48 0.0016 23.5 2.5 34 68-109 18-51 (51)
No 1
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=100.00 E-value=2.1e-57 Score=481.60 Aligned_cols=316 Identities=22% Similarity=0.309 Sum_probs=248.4
Q ss_pred ccceecChhhHHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCce
Q 009892 67 RDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGF 146 (523)
Q Consensus 67 ~~~i~l~~~e~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~ 146 (523)
.....+++...+|++.|. . .|+++|+|||||||+|||++|+|+||+|++. ++++++.+. .. .
T Consensus 12 i~~~~~~~~~~~v~~~l~----~--~G~~~ylVGG~VRD~LLg~~~~D~Di~t~a~-p~~~~~~f~----~~-----~-- 73 (415)
T 3aql_A 12 ISRKDISENALKVMYRLN----K--AGYEAWLVGGGVRDLLLGKKPKDFDVTTNAT-PEQVRKLFR----NC-----R-- 73 (415)
T ss_dssp CCCGGGSCSCHHHHHHHH----H--TTCCEEEETHHHHHHHHSSCCSCCEEEESSC-HHHHHHHTT----TS-----C--
T ss_pred cChHhCCHHHHHHHHHHH----H--CCCeEEEECHHHHHHHcCCCCCCEEEEcCCC-HHHHHHHhh----hC-----e--
Confidence 355678888888887763 3 3688999999999999999999999999985 777655432 10 0
Q ss_pred EEecCCCCCCcceeeEEEEEcCeEEEeeeccccccc-----------CCCCCc-ccccCCHHHHHhcCCCCccceeeecC
Q 009892 147 GVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYS-----------ENSRIP-TMRFGTAEEDAYRRDLTINSLFYNIN 214 (523)
Q Consensus 147 ~vi~~n~~~~k~~~t~~~~~~g~~iD~~~~R~e~y~-----------~~~r~p-~v~~gt~~eDl~RRDFTINAla~~l~ 214 (523)
.+ ++.|+|+++.+.+..+|++++|+|.|. .+|+++ .+.+||+++||.||||||||||||+.
T Consensus 74 -~~------g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl~RRDFTINAla~~~~ 146 (415)
T 3aql_A 74 -LV------GRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVA 146 (415)
T ss_dssp -CC------CCSSSCCEEESSSCEEEEEECCC-----------------------CCCCCHHHHHTTSSBSGGGCEEETT
T ss_pred -Ee------cccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCCCHHHHHhcCCccceeEEEeCC
Confidence 11 345688888888889999999998763 245553 36789999999999999999999999
Q ss_pred CCceecCccccHHHhhcCceecCCCCCCCCccCHHHHHHHHHHHhhcCCCCcHHHHHHHHhhHHHHHHhccccHHHHHHH
Q 009892 215 TSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTE 294 (523)
Q Consensus 215 ~~~i~D~~g~G~~DL~~g~IR~~~~p~~~F~eDPLRiLRa~RFAarlgf~id~~t~~ai~~~~~~~~l~~~is~ERI~~E 294 (523)
++.++||+| |++||++|+||++++|.++|.|||+||||+||||+++||.|+++|.++|++. ..++..+|.||++.|
T Consensus 147 ~~~l~D~~g-G~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~T~~ai~~~---~~~l~~is~eRi~~E 222 (415)
T 3aql_A 147 DFTVRDYVG-GMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRL---ATLLNDIPPAHLFEE 222 (415)
T ss_dssp TCCEECSSS-HHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHHHHTHHHHH---GGGGGGSCHHHHHHH
T ss_pred CCeeeCCCC-CHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhhhcCChHHHHHH
Confidence 999999998 9999999999999988889999999999999999999999999999999874 567788999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHcCchhHHhhCCCCCchhhhhhccccccchhhhHH-HHHHHhhccCC-CccchhHHHHhccc
Q 009892 295 IDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAW-DLTQLIGSSTF-NDDQRRLSQYAALF 372 (523)
Q Consensus 295 l~kiL~~~~~~~~L~lL~~~glL~~if~~Pe~~~~~~~~~~~q~~~~h~~tvd-h~l~~l~~~~~-~~e~~~ll~LAaLl 372 (523)
|.|||.++++..+|++|+++|+|..+| |++. .. .+..| .+|.|+++ |++.++..... ..+.+..++|||||
T Consensus 223 ~~kiL~~~~~~~~l~~l~~~GlL~~~l--Pe~~-~i--~~~~q--~~h~~~v~~h~L~~~d~~i~~~~~~~~~L~lAALL 295 (415)
T 3aql_A 223 SLKLLQAGYGYETYKLLCEYHLFQPLF--PTIT-RY--FTENG--DSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMF 295 (415)
T ss_dssp HHHHHTSSCHHHHHHHHHHTTCSTTTC--HHHH-TT--CCSSS--CCHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHcCChHHhc--hhHH-HH--hccCC--cchHHHHHHHHHHHHHHHHhcCCCCCHHHHHhHhc
Confidence 999999999999999999999999999 8853 21 13333 38889998 88877643100 11345678899999
Q ss_pred c-ccccccc---cC-CC----CCCchhHHHHHHHHhcC---CCCCHHHHHHHHHHHHHH
Q 009892 373 L-PFRNTTY---KD-NK----GKKIPVVNYTFRDSLKR---KASDAETVMNIHRVLEKF 419 (523)
Q Consensus 373 h-pi~k~~~---~~-~~----~h~~~~~a~iare~Lk~---~~~d~~~v~~lv~~~~~~ 419 (523)
| |++|+.. .. |. +| +.+|+.++++.+++ ++.+.+.+.+++..+..+
T Consensus 296 H~di~K~~~~~~~~~G~~~~~~h-~~~ga~~a~~~~~rl~l~~r~~~~v~~lv~lq~rL 353 (415)
T 3aql_A 296 WYPLLETAQKIAQESGLTYHDAF-ALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRM 353 (415)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHH-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchhhhhhhhhhccCCCchHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 9 8998732 11 11 34 57899999998887 556777788888776443
No 2
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=2.3e-55 Score=468.30 Aligned_cols=307 Identities=24% Similarity=0.394 Sum_probs=243.1
Q ss_pred eecChhhHHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEe
Q 009892 70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVI 149 (523)
Q Consensus 70 i~l~~~e~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi 149 (523)
..|++....+++.+.+.++.. |+++|+|||||||+|||++++|+||+|++. +.++++.+.+.+ +..++
T Consensus 13 ~~lp~~~~~~l~~l~~~~~~~--G~~aylVGG~VRD~LLg~~~~D~Di~t~~~-~~~~~~~~~~~~---------~~~~~ 80 (441)
T 3h38_A 13 ERVDPKILNLFRLLGKFGDEV--NMPVYVVGGFVRDLLLGIKNLDIDIVVEGN-ALEFAEYAKRFL---------PGKLV 80 (441)
T ss_dssp HHSCHHHHHHHHHHHHHHHHT--TCCEEEETHHHHHHHHTCCCCCEEEEESSC-HHHHHHHHHTTS---------CEEEE
T ss_pred HhCCHHHHHHHHHHHHHHHHc--CCeEEEEcHHHHHHHCCCCCCCeeEEeCCC-HHHHHHHHHHHc---------CCEec
Confidence 468899999999999888876 478999999999999999999999999985 788877665432 12222
Q ss_pred cCCCCCCcceeeEEEEE-cCeEEEeeecccccccCCCCCcccccCCHHHHHhcCCCCccceeeecC---CCceecCcccc
Q 009892 150 PSNPDQSKHLETATMKL-YDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNIN---TSSVEDLTGRG 225 (523)
Q Consensus 150 ~~n~~~~k~~~t~~~~~-~g~~iD~~~~R~e~y~~~~r~p~v~~gt~~eDl~RRDFTINAla~~l~---~~~i~D~~g~G 225 (523)
. +++++|+++.+ +|..+||+++|+|.|..+|++|.|+++|+++||.|||||||||||+++ .|+|+||+| |
T Consensus 81 ~-----g~~~gt~~v~~~~g~~~ev~t~R~e~~~~~~~~p~V~~~~l~eDl~RRDFTINAla~~~~~~~~g~liD~~g-G 154 (441)
T 3h38_A 81 K-----HDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFG-G 154 (441)
T ss_dssp C-----CSSTTEEEEEETTSCEEEEEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSS-H
T ss_pred c-----CCcCcEEEEEEeCCeEEEEecccccccCCCCCCCccCCCCHHHHHHhccchhhhhhcccCCCCCCeEeCCCC-C
Confidence 1 35679999998 789999999999999999999999999999999999999999999987 488999998 9
Q ss_pred HHHhhcCceecCCCCCCCCccCHHHHHHHHHHHhhcCCCCcHHHHHHHHhhHHHHHHhccccHHHHHHHHHHhhcCCCHH
Q 009892 226 IADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPV 305 (523)
Q Consensus 226 ~~DL~~g~IR~~~~p~~~F~eDPLRiLRa~RFAarlgf~id~~t~~ai~~~~~~~~l~~~is~ERI~~El~kiL~~~~~~ 305 (523)
++||++|+||++++ .+|.|||+||||++|||+++||+|+++|.++|++. ....++.++|.|||+.||.|||.+++|.
T Consensus 155 ~~DL~~~~iR~v~~--~~F~eDplRiLRa~Rfaa~lgf~i~~~t~~~i~~~-~~~~~l~~is~eRi~~El~kll~~~~~~ 231 (441)
T 3h38_A 155 YRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIEETTERLLKQA-VEEGYLERTTGPRLRQELEKILEEKNPL 231 (441)
T ss_dssp HHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHTTCEECHHHHHHHHHH-HHTTHHHHSCHHHHHHHHHHHHTSSCHH
T ss_pred HHHHhCCEEEECCC--CChhhCHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HhhchhccCCHHHHHHHHHHHHcCCCHH
Confidence 99999999999975 58999999999999999999999999999999864 2234667899999999999999999999
Q ss_pred HHHHHHHHcCchhHHhhCCCCCchhhhhhccccccchhhhHHHHHHHhhccCCCccchhHHHHhccccccccccccCCCC
Q 009892 306 KAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKG 385 (523)
Q Consensus 306 ~~L~lL~~~glL~~if~~Pe~~~~~~~~~~~q~~~~h~~tvdh~l~~l~~~~~~~e~~~ll~LAaLlhpi~k~~~~~~~~ 385 (523)
.+|++|+++|++..+| |++.... ...+ .+....+.+...... +.......++|++|+|+..+.
T Consensus 232 ~~l~~l~~~glL~~i~--Pel~~~~---~~~~----~l~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~~~~~~------- 294 (441)
T 3h38_A 232 KSIRRMAQFDVIKHLF--PKTYYTP---SMDE----KMENLFRNIPWVEEN-FGEVDRFYAVLHVFLEFYDDE------- 294 (441)
T ss_dssp HHHHHHHHTTHHHHHS--TTCCCCH---HHHH----HHHHHHHHHHHHHHH-HCCCCHHHHHHHHHTTTCCHH-------
T ss_pred HHHHHHHHcCChHHhC--cccccch---hHHH----HHHHHHHHHHHHHhh-ccchhhHHHHHHHHhCCCCHH-------
Confidence 9999999999999999 9963211 0000 111111111111000 011234556788888876421
Q ss_pred CCchhHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 009892 386 KKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKF 419 (523)
Q Consensus 386 h~~~~~a~iare~Lk~~~~d~~~v~~lv~~~~~~ 419 (523)
...-+.+.||.++...+.+..++..+..+
T Consensus 295 -----~~~~~~~rl~ls~~~~~~l~~l~~~~~~~ 323 (441)
T 3h38_A 295 -----SWKEVRDRYSLRRNLINEIRHVEKSAPAL 323 (441)
T ss_dssp -----HHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 12335578888998888888887765443
No 3
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=3.4e-55 Score=462.22 Aligned_cols=294 Identities=23% Similarity=0.307 Sum_probs=227.0
Q ss_pred HHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceeeEE
Q 009892 84 LNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETAT 163 (523)
Q Consensus 84 ~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~k~~~t~~ 163 (523)
.+.++.. |+++|+|||||||+|||++++|+||+|++. +.+|++.+.+.+. . .+.+ ++.++|++
T Consensus 3 ~~~~~~~--g~~~y~VGG~VRD~llg~~~~D~Di~~~~~-~~~~~~~~~~~~~---~----~~~~-------~~~~~t~~ 65 (390)
T 1vfg_A 3 GQIAKEM--GLRAYIVGGVVRDILLGKEVWDVDFVVEGN-AIELAKELARRHG---V----NVHP-------FPEFGTAH 65 (390)
T ss_dssp HHHHHHT--TCCEEEETHHHHHHHTTCCCSEEEEEESSC-HHHHHHHHHHHHT---C----CCEE-------ETTTTEEE
T ss_pred HHHHHHc--CCeEEEEChHHHHHHcCCCCCCEEEEEeCC-hHHHHHHHHHHcC---C----ceee-------cCCCcEEE
Confidence 4555655 578999999999999999999999999985 7888888877652 1 1111 24579999
Q ss_pred EEEcCeEEEeeecccccccCCCCCcccccCCHHHHHhcCCCCccceeeecCC---CceecCccccHHHhhcCceecCCCC
Q 009892 164 MKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINT---SSVEDLTGRGIADLKHGKIVTPLPP 240 (523)
Q Consensus 164 ~~~~g~~iD~~~~R~e~y~~~~r~p~v~~gt~~eDl~RRDFTINAla~~l~~---~~i~D~~g~G~~DL~~g~IR~~~~p 240 (523)
+.++|..+||+++|+|.|+.+|++|+|+++|+++||.||||||||||||+++ |+++||+| |++||++|+||++++
T Consensus 66 v~~~~~~~e~~~~R~e~~~~~~~~p~v~~~~l~~Dl~RRDfTiNAla~~~~~~~~g~l~D~~~-G~~DL~~~~ir~v~~- 143 (390)
T 1vfg_A 66 LKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFG-GLRDLKDKVIRVLHP- 143 (390)
T ss_dssp EEETTEEEEEEECCSCC---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSC-HHHHHHTTEECBSST-
T ss_pred EEECCEEEEEeccCcccCCCCCCCCccCCCCHHHHHhhCCCchhheeecccCCCCCeEEeCCC-CHHHHhCCeeEeCCc-
Confidence 9999999999999999999999999999999999999999999999999864 79999998 999999999999964
Q ss_pred CCCCccCHHHHHHHHHHHhhcCCCCcHHHHHHHHhhHHHHHHhccccHHHHHHHHHHhhcCCCHHHHHHHHHHcCchhHH
Q 009892 241 KATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIV 320 (523)
Q Consensus 241 ~~~F~eDPLRiLRa~RFAarlgf~id~~t~~ai~~~~~~~~l~~~is~ERI~~El~kiL~~~~~~~~L~lL~~~glL~~i 320 (523)
.+|.|||+||||+||||+|+||.|+++|.++|++. ....++.++|.||++.||.|||.+++|..+|+.|+++|+|..+
T Consensus 144 -~~F~eDPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~-~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~ 221 (390)
T 1vfg_A 144 -VSFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQA-VNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEI 221 (390)
T ss_dssp -THHHHCTTHHHHHHHHHHHHTCEECHHHHHHHHHH-HHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHH
T ss_pred -cchhhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHH
Confidence 69999999999999999999999999999999864 2223677899999999999999999999999999999999999
Q ss_pred hhCCCCCchhhhhhccccccchhhh--HHHHHHHhhccCCCccchhHHHHhccccccccccccCCCCCCchhHHHHHHHH
Q 009892 321 FKLPLQVEPEVLEGCEMFCTAYLDA--AWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDS 398 (523)
Q Consensus 321 f~~Pe~~~~~~~~~~~q~~~~h~~t--vdh~l~~l~~~~~~~e~~~ll~LAaLlhpi~k~~~~~~~~h~~~~~a~iare~ 398 (523)
| |++... .+..|. ..+... .++...... ....+.+++|||||||+++.. +.-+.+.
T Consensus 222 l--Pe~~~~---~~~~q~-l~~~~~~~~~~~~~~~~----~~~~~~~l~laaLlhdi~~~~------------a~~~~~r 279 (390)
T 1vfg_A 222 I--EGFQWN---EKVLQK-LYALRKVVDWHALEFSE----ERIDYGWLYLLILISNLDYER------------GKHFLEE 279 (390)
T ss_dssp S--TTCCCC---HHHHHH-HHHHHHHHHHHHHHGGG----SCCCHHHHHHHHHHCSCCSST------------THHHHHH
T ss_pred h--Hhhhhh---hhHHHH-HHHHHHHHHHhHHhhhc----cccchHHHHHHHHHccCCHHH------------HHHHHHH
Confidence 9 996321 111221 111111 112211111 113456788999999998521 1235567
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 009892 399 LKRKASDAETVMNIHRVLEKFL 420 (523)
Q Consensus 399 Lk~~~~d~~~v~~lv~~~~~~~ 420 (523)
++.++.+.+.+.+++++|..+.
T Consensus 280 L~ls~~~~~~v~~Lv~~h~~~~ 301 (390)
T 1vfg_A 280 MSAPSWVRETYKFMKFKLGSLK 301 (390)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998886544
No 4
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=4.9e-55 Score=467.59 Aligned_cols=287 Identities=25% Similarity=0.287 Sum_probs=223.5
Q ss_pred cChhhHHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecC
Q 009892 72 LTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPS 151 (523)
Q Consensus 72 l~~~e~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~ 151 (523)
+++.-..|++. ++.. |+++|+|||||||+|||++++|+||+|++. |+++++.+. ..|. .++
T Consensus 55 ~~~~~~~i~~~----l~~~--g~~~ylVGG~VRD~LLg~~~~D~Di~~~~~-p~~~~~~~~----~~g~------~~~-- 115 (448)
T 1ou5_A 55 FTEGLKSLTEL----FVKE--NHELRIAGGAVRDLLNGVKPQDIDFATTAT-PTQMKEMFQ----SAGI------RMI-- 115 (448)
T ss_dssp SCTTHHHHHHH----HHHT--TCCEEEESTTTHHHHHTSCCSSCEEEESSC-HHHHHHHHT----TTTC------CBC--
T ss_pred HHHHHHHHHHH----HHhc--CCeEEEeCHHHHHHHcCCCCCCEEEEeCCC-HHHHHHHHH----HcCC------ccc--
Confidence 55555555544 4444 678999999999999999999999999984 777765543 2221 112
Q ss_pred CCCCCcceeeEEEEEcCeEEEeeecccccccCCCCCcccccC-CHHHHHhcCCCCccceeeecCCCceecCccccHHHhh
Q 009892 152 NPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFG-TAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLK 230 (523)
Q Consensus 152 n~~~~k~~~t~~~~~~g~~iD~~~~R~e~y~~~~r~p~v~~g-t~~eDl~RRDFTINAla~~l~~~~i~D~~g~G~~DL~ 230 (523)
|..++.++|+++.+.|..+||+++|+|.|+ +||+|+|+|+ |+++||.||||||||||||+ +|.++||+| |++||+
T Consensus 116 -~~~g~~~gt~~v~~~~~~~ev~t~R~~~~~-~~r~~~v~~~~~l~eDl~RRDFTINAla~~~-~g~l~D~~g-G~~DL~ 191 (448)
T 1ou5_A 116 -NNRGEKHGTITARLHEENFEITTLRIDVTT-DGRHAEVEFTTDWQKDAERRDLTINSMFLGF-DGTLFDYFN-GYEDLK 191 (448)
T ss_dssp -CCCCTTCCCEEECTTTTCEEEEECCS-------------SSCCSSCCGGGSSBGGGSCEECS-SCBEECSSS-HHHHTT
T ss_pred -cCcCcccceEEEEECCEEEEEEeecccccc-cCCCCccccCccHHHHHHHcCCChhheeECC-CCCEeCCCC-CHHHHh
Confidence 211345699999999999999999999986 7999999997 79999999999999999999 799999998 999999
Q ss_pred cCceecCCCCCCCCccCHHHHHHHHHHHhhc--CC-CCcHHHHHHHHhhHHHHHHhccccHHHHHHHHHHhhcCCCHHHH
Q 009892 231 HGKIVTPLPPKATFLDDPLRVLRAIRFGARF--DF-ILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKA 307 (523)
Q Consensus 231 ~g~IR~~~~p~~~F~eDPLRiLRa~RFAarl--gf-~id~~t~~ai~~~~~~~~l~~~is~ERI~~El~kiL~~~~~~~~ 307 (523)
+|+||++++|.++|.|||+||||+||||+|+ || .|+++|.++|++. ...+.++|.|||+.||.|||.+++|..+
T Consensus 192 ~~~IR~v~d~~~rF~EDPLRiLRa~RFaarl~~gf~~I~~~T~~ai~~~---~~~L~~is~ERi~~El~kiL~~~~~~~~ 268 (448)
T 1ou5_A 192 NKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAEN---AKGLAGISGERIWVELKKILVGNHVNHL 268 (448)
T ss_dssp TTCCCBSSTTTTTSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHS---CTTGGGSCSHHHHHHHHHHHTSTTHHHH
T ss_pred CCeEEecCChHHhhhhCHHHHHHHHHHHHHcCcCCCCcCHHHHHHHHHH---HHHHhhCCHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999 96 9999999999875 4456789999999999999999999999
Q ss_pred HHHHHHcCchhHH-hhCCCCCchhhhhhccccccchhhhHHHHHHHhhccCCCccchhHHHHhccccccccccccCCCCC
Q 009892 308 MTHICGLTLFWIV-FKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGK 386 (523)
Q Consensus 308 L~lL~~~glL~~i-f~~Pe~~~~~~~~~~~q~~~~h~~tvdh~l~~l~~~~~~~e~~~ll~LAaLlhpi~k~~~~~~~~h 386 (523)
|++|+++|+|..+ | |++... ....|++...... ..+.+++||+||||+++.
T Consensus 269 l~~L~~~GlL~~i~l--Pe~~~i--------------~~~~~~l~~~~~~----~~~~~l~lAaLlhDi~ka-------- 320 (448)
T 1ou5_A 269 IHLIYDLDVAPYIGL--PANASL--------------EEFDKVSKNVDGF----SPKPVTLLASLFKVQDDV-------- 320 (448)
T ss_dssp HHHHHHTTCGGGGTC--CCCSCC--------------HHHHHHHHHHTTS----CCCHHHHHGGGCCSTTTT--------
T ss_pred HHHHHHCCCceEecC--cchhhH--------------HHHHHHHHHHHhc----CCCHHHHHHHHhcChHHH--------
Confidence 9999999999999 8 996311 0112444433211 235678899999998742
Q ss_pred CchhHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009892 387 KIPVVNYTFRDSLKRKASDAETVMNIHRVLEK 418 (523)
Q Consensus 387 ~~~~~a~iare~Lk~~~~d~~~v~~lv~~~~~ 418 (523)
.-+.+.|+.++.+.+.+.+++++|..
T Consensus 321 ------~~i~~rLkls~~~~~~v~~Lv~~h~~ 346 (448)
T 1ou5_A 321 ------TKLDLRLKIAKEEKNLGLFIVKNRKD 346 (448)
T ss_dssp ------HHHHHHHCCCTTHHHHHHHHTTTTTT
T ss_pred ------HHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 23456899999999999999988754
No 5
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=1.7e-54 Score=458.39 Aligned_cols=279 Identities=23% Similarity=0.279 Sum_probs=219.6
Q ss_pred HHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceee
Q 009892 82 CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLET 161 (523)
Q Consensus 82 ~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~k~~~t 161 (523)
.+.+.++.. |+++|+|||||||+|||++++|+||+|++. ++++++.+. +.+.+ ++.++|
T Consensus 10 ~i~~~l~~~--g~~~y~VGG~VRD~lLg~~~~D~Di~~~~~-~~~~~~~~~-----------~~~~~-------g~~~gt 68 (404)
T 1miw_A 10 GIIQQLKQH--GYDAYFVGGAVRDLLLGRPIGDVDIATSAL-PEDVMAIFP-----------KTIDV-------GSKHGT 68 (404)
T ss_dssp HHHHHHHHT--TCCEEEESHHHHHHHHTCCCCCCEEEESSC-HHHHHHHCS-----------SEEEE-------EGGGTE
T ss_pred HHHHHHHhC--CCeEEEECHHHHHHHcCCCCCCEEEEeCCC-HHHHHHHhh-----------hhccc-------CcCCCe
Confidence 344555555 578999999999999999999999999975 666654331 11111 245789
Q ss_pred EEEEEcCeEEEeeecccccccCCCCCc-cccc-CCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCC
Q 009892 162 ATMKLYDLWIDFVNLRCEDYSENSRIP-TMRF-GTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLP 239 (523)
Q Consensus 162 ~~~~~~g~~iD~~~~R~e~y~~~~r~p-~v~~-gt~~eDl~RRDFTINAla~~l~~~~i~D~~g~G~~DL~~g~IR~~~~ 239 (523)
+++...|..+||+++|+|.|..++|+| .|+| +|+++||.||||||||||||+ +|+++||+| |++||++|+||++++
T Consensus 69 ~~v~~~~~~~ev~t~R~e~~~~~~~~p~~v~~~~~l~~Dl~RRDfTiNAla~~~-~g~l~D~~~-G~~Dl~~~~ir~~~~ 146 (404)
T 1miw_A 69 VVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDE-YGTIIDPFG-GREAIRRRIIRTVGE 146 (404)
T ss_dssp EEEEETTEEEEEEECEECC---------CCEECSCHHHHHHTSSBSGGGCEECT-TCCEECTTC-HHHHHHHTEECBSSC
T ss_pred EEEEECCeEEEEeeecccCCCCCCcCCcccccCCcHHHHHHhCCCCcchheeCC-CCCEeCCCC-CHHHHhCCeeeecCC
Confidence 999999999999999999999999999 5899 799999999999999999998 789999998 999999999999998
Q ss_pred CCCCCccCHHHHHHHHHHHhhcCCCCcHHHHHHHHhhHHHHHHhccccHHHHHHHHHHhhcCCCHHHHHHHHHHcCchhH
Q 009892 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWI 319 (523)
Q Consensus 240 p~~~F~eDPLRiLRa~RFAarlgf~id~~t~~ai~~~~~~~~l~~~is~ERI~~El~kiL~~~~~~~~L~lL~~~glL~~ 319 (523)
|.++|.|||+||||+||||+|+||.|+++|.++|+.. ..++.++|.|||+.||.|||.++++..+|+.|+++|++..
T Consensus 147 p~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~---~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~ 223 (404)
T 1miw_A 147 AEKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQN---APLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY 223 (404)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCEECHHHHHHHHHH---GGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS
T ss_pred hHhhHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh
Confidence 8899999999999999999999999999999999875 4567889999999999999999999999999999999997
Q ss_pred HhhCCCCCchhhhhhccccccchhhhHHHHHHHhhccCCCccchhHHHHhccccccccccccCCCCCCchhHHHHHHHHh
Q 009892 320 VFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSL 399 (523)
Q Consensus 320 if~~Pe~~~~~~~~~~~q~~~~h~~tvdh~l~~l~~~~~~~e~~~ll~LAaLlhpi~k~~~~~~~~h~~~~~a~iare~L 399 (523)
+ |++... . +.+|.++ ++... . -....+.||+||||+++.. +.-+...|
T Consensus 224 -l--Pe~~~~-~-------~~~~~l~------~~~~~--~-~~~~~l~~aaLlhdigk~~------------a~~~l~rL 271 (404)
T 1miw_A 224 -L--PGLAGK-E-------KQLRLAA------AYRWP--W-LAAREERWALLCHALGVQE------------SRPFLRAW 271 (404)
T ss_dssp -S--TTCSSC-H-------HHHHHGG------GSCGG--G-CCSHHHHHHHHHHHHTCSC------------HHHHHHHT
T ss_pred -C--cchhhH-H-------HHHHHHH------HHhcc--c-cCChHHHHHHHHHhCCHHH------------HHHHHHHc
Confidence 6 986311 0 1122222 12111 0 1124577899999997521 22344678
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 009892 400 KRKASDAETVMNIHRVLEK 418 (523)
Q Consensus 400 k~~~~d~~~v~~lv~~~~~ 418 (523)
++++.+.+.|.+++++|..
T Consensus 272 kls~~~~~~v~~Lv~~~~~ 290 (404)
T 1miw_A 272 KLPNKVVDEAGAILTALAD 290 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 8888899999999987754
No 6
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=93.02 E-value=1.1 Score=42.05 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCeEEEEchHHHHHH----cCCC----CCCeEEEEcC-CChHHHHHHHHHHHHhcCCccCCceEEecC
Q 009892 81 SCLLNTLRHFNLETVLRVAGGWVRDKL----LGKD----CYDIDIALDN-MMGSEFATKVAEYLSATGETAPSGFGVIPS 151 (523)
Q Consensus 81 ~~l~~~~~~~~~~~~~yiVGG~VRD~L----Lg~~----~~DiDi~~~~-~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~ 151 (523)
-.+++.++..+.. ..||++|+||..+ -|++ .+|||++--. ....+--..+.+.+...-...
T Consensus 22 m~iL~~~~~L~Lp-d~~laAG~vrn~VWn~L~g~~~~~~i~DiDviYFD~d~s~e~e~~~e~~L~~~~p~~--------- 91 (191)
T 2la3_A 22 MAILTIIRDLGLK-DSWLAAGSVRNFIWNLLSDKSPFDHETDIDVIFFDPDFSYEETLLLEKKLREDFPQY--------- 91 (191)
T ss_dssp HHHHHHHHHTCCS-SCEEETHHHHHHHHGGGTTSCTTCCCSEEEEEECCTTSCHHHHHHHHHHHHHHCTTS---------
T ss_pred HHHHHHHHHcCCc-hhhhhhhhhHhhHHHHhcCCCCCCCCCceeEEEECCCCCHHHHHHHHHHHHHhCCCC---------
Confidence 3455666777654 4699999999776 4554 4899998743 222333334444443321111
Q ss_pred CCCCCcceeeEEEEEcCeEEEeeecccccccCCCCCcc-cccCCHHHHHhcCCC-CccceeeecCCC---ceecCccccH
Q 009892 152 NPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPT-MRFGTAEEDAYRRDL-TINSLFYNINTS---SVEDLTGRGI 226 (523)
Q Consensus 152 n~~~~k~~~t~~~~~~g~~iD~~~~R~e~y~~~~r~p~-v~~gt~~eDl~RRDF-TINAla~~l~~~---~i~D~~g~G~ 226 (523)
.+++-| +.+-. -+.|. ..+.+ -+|+..+=- |--|++..++.+ +++=|+ |+
T Consensus 92 ------------------~weVkN---QArmH-l~~~~~~Py~S-s~dAis~wpe~~TAvGvrl~~~~~lel~AP~--Gl 146 (191)
T 2la3_A 92 ------------------QWELKN---QVYMH-QHSPHTASYTS-SRDAMSKYPERCTAVGLRLNEELDFELYVPY--GL 146 (191)
T ss_dssp ------------------EEEEEE---STTTT-SSSSSCCCCSS-HHHHHTTSSSTTTSCEEECCTTSCCEEECTT--CT
T ss_pred ------------------CEEEEe---ceecc-cCCCCCCCCcC-HHHHHHhchhhheeEEEEECCCCcEEEECCc--CH
Confidence 111111 01000 01111 11223 466777664 888889888653 577887 89
Q ss_pred HHhhcCceec
Q 009892 227 ADLKHGKIVT 236 (523)
Q Consensus 227 ~DL~~g~IR~ 236 (523)
+||-+++||.
T Consensus 147 ~dlf~~~vrp 156 (191)
T 2la3_A 147 EDILNFQVRP 156 (191)
T ss_dssp HHHHTTEECC
T ss_pred HHHhcCeeec
Confidence 9999999995
No 7
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A*
Probab=92.32 E-value=0.23 Score=45.52 Aligned_cols=52 Identities=35% Similarity=0.594 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCeEEEEchHHHHHHcCC---CCCCeEEEEcCCChHHHHHHHHHHHHhcC
Q 009892 82 CLLNTLRHFNLETVLRVAGGWVRDKLLGK---DCYDIDIALDNMMGSEFATKVAEYLSATG 139 (523)
Q Consensus 82 ~l~~~~~~~~~~~~~yiVGG~VRD~LLg~---~~~DiDi~~~~~~~~~f~~~l~~~l~~~g 139 (523)
.+++.++.+ +...+|+|||-=|.++|+ +-+|+||.+.... +..+.+.|...|
T Consensus 13 evl~~l~~~--~v~~~i~GGwAvD~~~G~~tR~H~DiDi~v~~~d----~~~l~~~L~~~G 67 (161)
T 4e8j_A 13 YILDLFEHM--KVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQH----TQKVIQKLEDIG 67 (161)
T ss_dssp HHHHHHHHH--TCCEEEEHHHHHHHHHTSCCSCCSEEEEEEEGGG----HHHHHHHHHHTT
T ss_pred HHHHHHHhC--CCcEEEEcHhhhhHhcCCCCCcCCCeEEeecHHh----HHHHHHHHHHCC
Confidence 344555555 467899999999999995 4579999997533 244556666654
No 8
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=90.20 E-value=0.32 Score=46.78 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=44.4
Q ss_pred cccchhhhHHHHHHHhhccCCCccchhHHHHhccccccccccccCCCCCCchhHHHHHHHHhcCCCCCHHH---HHHHHH
Q 009892 338 FCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAET---VMNIHR 414 (523)
Q Consensus 338 ~~~~h~~tvdh~l~~l~~~~~~~e~~~ll~LAaLlhpi~k~~~~~~~~h~~~~~a~iare~Lk~~~~d~~~---v~~lv~ 414 (523)
++..|...|......+... ...+..++.+||+|||+++..+ .+| ...|+.++++.|+..+.+.+. |..++.
T Consensus 25 H~~~H~~rV~~~a~~ia~~--~~~d~~~l~~AAlLHDig~~k~---~~h-~~~ga~~a~~~L~~~g~~~~~i~~V~~~I~ 98 (223)
T 3djb_A 25 HDWYHIRRVHKMAISLSEQ--EGGNRFIIEMAALLHDVADEKL---NES-EEAGMKKVSDWLEELHVEEEESKHVLHIIA 98 (223)
T ss_dssp TTHHHHHHHHHHHHHHHTT--TCSCHHHHHHHHTTHHHHC--C---CSS-STTTHHHHHHHHHHTCCCHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhhcccccc---CCc-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4455655555443333221 1235678889999999998653 244 567888999988876666554 444444
Q ss_pred HH
Q 009892 415 VL 416 (523)
Q Consensus 415 ~~ 416 (523)
+|
T Consensus 99 ~H 100 (223)
T 3djb_A 99 NM 100 (223)
T ss_dssp CC
T ss_pred Hh
Confidence 44
No 9
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=89.21 E-value=0.49 Score=45.45 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=42.9
Q ss_pred cccchhhhHHHHHHHhhccCCCccchhHHHHhccccccccccccCCCCCCchhHHHHHHHHhcCCCCCHHH---HHHHHH
Q 009892 338 FCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAET---VMNIHR 414 (523)
Q Consensus 338 ~~~~h~~tvdh~l~~l~~~~~~~e~~~ll~LAaLlhpi~k~~~~~~~~h~~~~~a~iare~Lk~~~~d~~~---v~~lv~ 414 (523)
++..|...|......+... ......++.+||+|||+++..+. ++ ...|+.++++.|+..+.+.+. |..++.
T Consensus 25 H~~~H~~rV~~~a~~ia~~--~~~d~~~l~~AalLHDig~~k~~---~~-~~~ga~~a~~~L~~~g~~~~~i~~V~~~I~ 98 (223)
T 3dto_A 25 HDWYHIRRVTLMAKAIGEQ--EKVDVFVVQIAALFHDLIDDKLV---DD-PETAKQQLIDWMEAAGVPSQKIDHTMDIIN 98 (223)
T ss_dssp -CHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHSTTC-----------CHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhhccccccC---CC-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4556666665433333211 11356788899999999987532 33 457889999999987766654 445555
Q ss_pred HH
Q 009892 415 VL 416 (523)
Q Consensus 415 ~~ 416 (523)
+|
T Consensus 99 ~H 100 (223)
T 3dto_A 99 TI 100 (223)
T ss_dssp CC
T ss_pred Hc
Confidence 54
No 10
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=89.08 E-value=1.2 Score=40.78 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCC--CCCCeEEEEcCCChHHHHHHHHHHHHhcC
Q 009892 74 DTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGK--DCYDIDIALDNMMGSEFATKVAEYLSATG 139 (523)
Q Consensus 74 ~~e~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~--~~~DiDi~~~~~~~~~f~~~l~~~l~~~g 139 (523)
+.-.+.+..+.+.++.. +.. |.+||..--.+-|. +++||||.++.. =++.+.+.|...|
T Consensus 16 ~~~~~~L~~i~~~L~~~--~V~-~~l~Gs~Al~~~G~~~~~~DIDi~i~~~----da~~~~~~L~~~g 76 (169)
T 2fcl_A 16 PEYLRVLRXIYDRLXNE--XVN-WVVTGSLSFALQGVPVEVHDIDIQTDEE----GAYEIERIFSEFV 76 (169)
T ss_dssp HHHHHHHHHHHHHHTTS--SCC-EEEEHHHHHHHTTCCCCCCSEEEEECHH----HHHHHHHHTGGGE
T ss_pred HHHHHHHHHHHHHHHhc--CCC-EEEeHHHHHHHcCCCCCCCccEEEeccc----CHHHHHHHHHHHh
Confidence 33344455555555544 343 56666666689886 489999999653 2455666665544
No 11
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=88.92 E-value=0.36 Score=45.58 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=33.4
Q ss_pred chhHHHHhccccccccccccCCCCCCchhHHHHHHHHhcCCCCCHH---HHHHHHHHH
Q 009892 362 QRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAE---TVMNIHRVL 416 (523)
Q Consensus 362 ~~~ll~LAaLlhpi~k~~~~~~~~h~~~~~a~iare~Lk~~~~d~~---~v~~lv~~~ 416 (523)
++.++.+||||||+|+..... + ...++.++++.|+..+.+.+ .|..++.+|
T Consensus 47 d~~~v~~AAlLHDig~~~~~~---~-~~~~a~~a~~~L~~~g~~~~~~~~V~~~I~~H 100 (209)
T 3b57_A 47 DLFTIELAALFHDYSDIKLTT---D-EQEATKTLINWMETKEIPSELIKKIIRIIQSV 100 (209)
T ss_dssp CHHHHHHHHHHTTCCC-----------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCcccCCC---c-hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 467888999999999876421 1 23688889998886555544 566677666
No 12
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=87.57 E-value=3.5 Score=41.53 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=47.6
Q ss_pred ccceecChhhHHHHH----HHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCCh----HHHHHHHHHHHHhc
Q 009892 67 RDKIELTDTETKIFS----CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMG----SEFATKVAEYLSAT 138 (523)
Q Consensus 67 ~~~i~l~~~e~~i~~----~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~----~~f~~~l~~~l~~~ 138 (523)
...+.-|++|.+..+ .+.+.++..-.+.++++.|-+++. ++.+..|||+++....+ .++...+.+.|...
T Consensus 29 ~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g--~~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~ 106 (323)
T 3nyb_A 29 VAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTD--LYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKK 106 (323)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTT--CCCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHT
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccC--CCCCCCCceEEEecCCCChhHHHHHHHHHHHHhhC
Confidence 355667888876554 444455555456789999999987 45677999999976432 23455666667654
Q ss_pred C
Q 009892 139 G 139 (523)
Q Consensus 139 g 139 (523)
+
T Consensus 107 ~ 107 (323)
T 3nyb_A 107 N 107 (323)
T ss_dssp T
T ss_pred C
Confidence 4
No 13
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=86.69 E-value=0.62 Score=44.55 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=36.2
Q ss_pred chhHHHHhccccccccccccCCCCCCchhHHHHHHHHhcCCCCCHH---HHHHHHHHH
Q 009892 362 QRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAE---TVMNIHRVL 416 (523)
Q Consensus 362 ~~~ll~LAaLlhpi~k~~~~~~~~h~~~~~a~iare~Lk~~~~d~~---~v~~lv~~~ 416 (523)
...++.+||||||+++..+. + ...++.++++.|+..+.+.+ .|..++.+|
T Consensus 48 d~~~l~lAAlLHDigk~~~~----~-~~~ga~~a~~~L~~~g~~~~~i~~V~~~I~~H 100 (225)
T 2qgs_A 48 DTLVIELSSLLHDTVDSKLT----D-EILAYDQLKQFLSTLDLSSEISQQVLYIIKHM 100 (225)
T ss_dssp CCHHHHHHHHHTTTTCCSSS----C-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCCCCC----c-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 45678899999999986432 2 45688899999987666655 556666655
No 14
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=86.49 E-value=0.28 Score=46.53 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=38.7
Q ss_pred chhHHHHhcccccccccccc-CCCCCCchhHHHHHHHHhcCCCCCH---HHHHHHHHHHH
Q 009892 362 QRRLSQYAALFLPFRNTTYK-DNKGKKIPVVNYTFRDSLKRKASDA---ETVMNIHRVLE 417 (523)
Q Consensus 362 ~~~ll~LAaLlhpi~k~~~~-~~~~h~~~~~a~iare~Lk~~~~d~---~~v~~lv~~~~ 417 (523)
....+.+||||||+++.... .+..| ..+|+.++++.|+..+.+. +.|..++.+|.
T Consensus 55 d~~~l~~AaLLHDIg~~~~~~~~~~H-~~~ga~~a~~~L~~~~~~~~~i~~v~~~I~~H~ 113 (220)
T 2pq7_A 55 DLQKAIIAALLHDIKRPHEALTGVDH-AESGAEYASGLLPTMGFDISFVAEVSKAIRSHR 113 (220)
T ss_dssp CHHHHHHHHHHTTTTHHHHHHHCCCH-HHHHHHHHHHHGGGGTCCHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHcCCCcccCCCcCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 45678899999999754221 13355 5789999999888766555 46777777764
No 15
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=85.62 E-value=0.19 Score=48.89 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=43.0
Q ss_pred ccchhhhHHHHHHHhhccCCCccchhHHHHhcccccccccccc--CCCCCCchhHHHHHHHHhcC-----CCCCHHHHHH
Q 009892 339 CTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYK--DNKGKKIPVVNYTFRDSLKR-----KASDAETVMN 411 (523)
Q Consensus 339 ~~~h~~tvdh~l~~l~~~~~~~e~~~ll~LAaLlhpi~k~~~~--~~~~h~~~~~a~iare~Lk~-----~~~d~~~v~~ 411 (523)
+..|...|......+... ......++.+||+|||+++.... .+.+| ...|+.++++.|+. +....+.|.+
T Consensus 26 ~~~H~~rV~~~a~~ia~~--~~~d~~~~~~AalLHDig~~~~~~~~~~~H-~~~ga~~A~~~L~~~~~g~~~e~i~~V~~ 102 (239)
T 3gw7_A 26 DVCHFRRVWATAQKLAAD--DDVDMLVILTACYFHDIVSLAKNHPQRQRS-SILAAEETRRLLREEFEQFPAEKIEAVCH 102 (239)
T ss_dssp -CCHHHHHHHHHHHHTTT--SCSCTTHHHHHHHHTTTTC--------CCS-SHHHHHHHHHHHHHHTTSSCTTTTTSTTT
T ss_pred cHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhhcccccccCCccccH-HHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 344544444433333211 12356788999999999986321 12245 57788888887764 4455566677
Q ss_pred HHHHH
Q 009892 412 IHRVL 416 (523)
Q Consensus 412 lv~~~ 416 (523)
++.+|
T Consensus 103 ~I~~H 107 (239)
T 3gw7_A 103 AIAAH 107 (239)
T ss_dssp GGGSS
T ss_pred HHHHc
Confidence 76666
No 16
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=83.99 E-value=0.7 Score=44.37 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=31.6
Q ss_pred chhHHHHhccccccccccccCCCCCCchhHHHHHHHHhcCCCCCHH---HHHHHHHHH
Q 009892 362 QRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAE---TVMNIHRVL 416 (523)
Q Consensus 362 ~~~ll~LAaLlhpi~k~~~~~~~~h~~~~~a~iare~Lk~~~~d~~---~v~~lv~~~ 416 (523)
+..++.+||+|||+|+..+. ++ ...++.++++.|+..+.+.+ .|..++.+|
T Consensus 52 d~~ll~lAAlLHDigk~k~~---~~-~~~ga~~a~~~L~~~g~~~~~~~~V~~~I~~H 105 (231)
T 2pjq_A 52 NLNLTLAAAWLHDVIDDKLM---AN-PAKAHQDLIVQLNAQNVTADDQTAIFAIIDHM 105 (231)
T ss_dssp CHHHHHHHHHHHHHHC-------------CHHHHHHHHHTTTCCHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHcCCcccCC---Ch-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 46788899999999986432 22 34678889998887665554 455555544
No 17
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=70.66 E-value=22 Score=36.93 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=47.0
Q ss_pred ecccceecChhhHHHHH----HHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCCh---HHHHHHHHHHHHh
Q 009892 65 QVRDKIELTDTETKIFS----CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMG---SEFATKVAEYLSA 137 (523)
Q Consensus 65 ~~~~~i~l~~~e~~i~~----~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~---~~f~~~l~~~l~~ 137 (523)
++...+..|++|....+ .|.+.++..-.+.++++.|-+++.. +.+..|||+++....+ .++...+.+.+..
T Consensus 50 ~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~--~~~~SDiDl~v~~~~~~~~~~~l~~l~~~L~~ 127 (405)
T 4e8f_A 50 EVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGL--ALKNSDMDLCVLMDSRVQSDTIALQFYEELIA 127 (405)
T ss_dssp HHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTC--CBSSCCEEEEEECCC---CTTHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCC--CCCCCCEEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 34467778899886554 4444455544578899999999986 4456799998865432 2345556666654
No 18
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=57.34 E-value=40 Score=36.15 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=46.3
Q ss_pred CCCeEEEEchHHHHHHcCCCCCCeEEEEcCCC---hHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceeeEEEEEcC
Q 009892 92 LETVLRVAGGWVRDKLLGKDCYDIDIALDNMM---GSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYD 168 (523)
Q Consensus 92 ~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~---~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~k~~~t~~~~~~g 168 (523)
.+.+++.+|-+.-..- .+..|||+++-+.. .++|...+.+.|..... . ..+..|.. ...-+..+...|
T Consensus 93 ~~~~v~~FGS~~lG~~--~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~-v-~~v~~I~~-----A~VPIIK~~~~g 163 (514)
T 1q79_A 93 VGGKIFTFGSYRLGVH--TKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEE-V-KDLRAVEE-----AFVPVIKLCFDG 163 (514)
T ss_dssp CBCEEEEEHHHHHTCC--CTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTT-E-EEEEEETT-----SSSCEEEEEETT
T ss_pred CCceEEEeeeeccCCC--CCCCceeEEEecCCcCCHHHHHHHHHHHHhcCcc-C-ceEEEecC-----CcccEEEEEECC
Confidence 4678887766654332 35689999775532 24555566666655321 1 34555521 233567777789
Q ss_pred eEEEeeecc
Q 009892 169 LWIDFVNLR 177 (523)
Q Consensus 169 ~~iD~~~~R 177 (523)
+.+|++-.+
T Consensus 164 i~vDL~f~~ 172 (514)
T 1q79_A 164 IEIDILFAR 172 (514)
T ss_dssp EEEEEEEEE
T ss_pred eeEEEEEec
Confidence 999987554
No 19
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=55.82 E-value=7.9 Score=35.50 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=13.7
Q ss_pred hHHHHhccccccccccc
Q 009892 364 RLSQYAALFLPFRNTTY 380 (523)
Q Consensus 364 ~ll~LAaLlhpi~k~~~ 380 (523)
..+.+|+||||+||...
T Consensus 43 ~~~~~AgLLHDiGk~~~ 59 (190)
T 3ccg_A 43 EKARIAGLVHDCAKKLP 59 (190)
T ss_dssp HHHHHHHHHTTTTTTSC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 35788999999999743
No 20
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=53.65 E-value=33 Score=34.66 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=35.1
Q ss_pred cceecChhhHHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCC-CCCeEEEEcCCChH
Q 009892 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGS 125 (523)
Q Consensus 68 ~~i~l~~~e~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~-~~DiDi~~~~~~~~ 125 (523)
.+|.+ .+-..+.+.+.+.++....+..+-++|+.=| |++ ++|+||.+....+.
T Consensus 145 ~ripr-~ea~~ia~~i~~~l~~~~~~~~v~i~GS~RR----gket~gDiDilit~~~~~ 198 (335)
T 2bcq_A 145 ERMPR-EEATEIEQTVQKAAQAFNSGLLCVACGSYRR----GKATCGDVDVLITHPDGR 198 (335)
T ss_dssp CCEEH-HHHHHHHHHHHHHHHTTCTTCEEEECHHHHT----TCSEESSEEEEEECTTSS
T ss_pred CCEEH-HHHHHHHHHHHHHHHhcCCCcEEEEcccccc----CCCCCCCeEEEEecCCch
Confidence 34444 2334667788888887766677666666554 665 79999999765443
No 21
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=53.05 E-value=21 Score=36.69 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=33.9
Q ss_pred hHHHHhccccccccccc--------cCCCCCCchhHHHHHH-----HHhcCCCCCHHH---HHHHHHH
Q 009892 364 RLSQYAALFLPFRNTTY--------KDNKGKKIPVVNYTFR-----DSLKRKASDAET---VMNIHRV 415 (523)
Q Consensus 364 ~ll~LAaLlhpi~k~~~--------~~~~~h~~~~~a~iar-----e~Lk~~~~d~~~---v~~lv~~ 415 (523)
....+||||||+|++.. ..+.+| ..+|+.+++ +.|+.- .+.+. |..++.+
T Consensus 75 ~~~~~AaLLHDiG~~pfsh~~e~~~~~g~~H-e~~g~~i~~~~~i~~iL~~~-~~~~~i~~I~~~I~~ 140 (371)
T 2hek_A 75 ELVKLAGLLHDLGHPPFSHTTEVLLPRERSH-EDFTERVIKETEIYEILKQD-YSHEDIERLVRITLG 140 (371)
T ss_dssp HHHHHHHHTTTTTCCSSSSCHHHHSTTSSSC-CCHHHHHHHHSHHHHHHHTT-SCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCccccccchHHHhccCCCH-HHHHHHHHhcchHHHHHHHh-CCHHHHHHHHHHHhc
Confidence 67788999999999852 124466 578888877 666654 55555 5555544
No 22
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=51.22 E-value=48 Score=35.65 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=47.6
Q ss_pred CCeEEEEchHHHHHHcCCCCCCeEEEEcCC---ChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceeeEEEEEcCe
Q 009892 93 ETVLRVAGGWVRDKLLGKDCYDIDIALDNM---MGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDL 169 (523)
Q Consensus 93 ~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~---~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~k~~~t~~~~~~g~ 169 (523)
+.+++++|-+.-..- .+..|||+++-+. +.++|-..+.+.|..... . ..+..|.. ...-+..+...|+
T Consensus 81 ~~~V~~FGSy~lG~~--~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~-v-~~v~~I~~-----A~VPIIK~~~~gi 151 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVH--GPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKE-L-DEIAPVPD-----AFVPIIKIKFSGI 151 (530)
T ss_dssp BCEEEEEHHHHHTCC--CTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTT-E-EEEEEETT-----SSSCEEEEEETTE
T ss_pred CceEEEecccccCCC--CCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCC-C-ceEEEecC-----CcccEEEEEECCE
Confidence 578888876664333 4568999987553 234565666666654321 1 34555521 2335677778899
Q ss_pred EEEeeeccc
Q 009892 170 WIDFVNLRC 178 (523)
Q Consensus 170 ~iD~~~~R~ 178 (523)
.+|++-.+.
T Consensus 152 ~vDL~f~~~ 160 (530)
T 2hhp_A 152 SIDLICARL 160 (530)
T ss_dssp EEEEEEEEC
T ss_pred eeEEEEecc
Confidence 999886653
No 23
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=49.61 E-value=92 Score=31.32 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHhcCCCCeEEEEchH-HHHHHcCCCCCCeEEEEc
Q 009892 74 DTETKIFSCLLNTLRHFNLETVLRVAGGW-VRDKLLGKDCYDIDIALD 120 (523)
Q Consensus 74 ~~e~~i~~~l~~~~~~~~~~~~~yiVGG~-VRD~LLg~~~~DiDi~~~ 120 (523)
+.-+++++.+.+.++....+.++++.|-+ |.. ++.+..|||+++.
T Consensus 47 ~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtG--l~lp~SDIDl~v~ 92 (353)
T 2ikf_A 47 RHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYG--VHEKGSDVDFVVL 92 (353)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHS--SCCTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEecCccccC--CCCCCcceeEEEe
Confidence 34456788888888887778999999999 555 4667889999984
No 24
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=45.95 E-value=34 Score=35.19 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCC-CCCeEEEEcCCChHH-----HHHHHHHHHHhc
Q 009892 77 TKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGSE-----FATKVAEYLSAT 138 (523)
Q Consensus 77 ~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~-~~DiDi~~~~~~~~~-----f~~~l~~~l~~~ 138 (523)
..+.+.+.+.++....+..+-++||+=| |++ ++|+||.+....+.. +...+.+.|...
T Consensus 180 ~~ia~~i~~~l~~~~~~~~v~i~GSyRR----gket~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~ 243 (381)
T 1jms_A 180 EAVSMLVKEAVVTFLPDALVTMTGGFRR----GKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQ 243 (381)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHT----TCSCBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEcccccc----CCCCcCCeEEEEeCCCccccchhhHHHHHHHHHHhC
Confidence 3566777888887766777777777666 664 799999997654431 333555556554
No 25
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=44.97 E-value=1.2e+02 Score=32.05 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=40.6
Q ss_pred ecccceecChhhHHHHHHHHHHHH----hcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcC
Q 009892 65 QVRDKIELTDTETKIFSCLLNTLR----HFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (523)
Q Consensus 65 ~~~~~i~l~~~e~~i~~~l~~~~~----~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~ 121 (523)
.+...+.+|++|..+...+.+.++ ..-.+.++++.|-++-. +|.+..|+|+++..
T Consensus 140 ~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tG--L~lp~SDIDlvl~~ 198 (464)
T 3pq1_A 140 TLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNT--FGKLGCDLDMFLDL 198 (464)
T ss_dssp HHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSS--CCBTTCCEEEEEEC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccC--CCCCCCCeEEEEec
Confidence 344678999999987776655554 33356899999999854 46788999999753
No 26
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=44.86 E-value=28 Score=29.08 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=31.0
Q ss_pred eecChhhHHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCC
Q 009892 70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122 (523)
Q Consensus 70 i~l~~~e~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~ 122 (523)
+.+++++. +.+.+.+++......+|+-|-++|.- -.+-.||||++...
T Consensus 7 ~~l~~~~~---~~i~~~l~~~~~v~~v~LFGS~ArG~--~~~~SDIDl~V~~~ 54 (114)
T 1no5_A 7 LDIKSEEL---AIVKTILQQLVPDYTVWAFGSRVKGK--AKKYSDLDLAIISE 54 (114)
T ss_dssp CCSCHHHH---HHHHHHHHHHCTTSEEEEEGGGTTTC--CCTTCCEEEEEECS
T ss_pred cCCCHHHH---HHHHHHHHHhCCCCEEEEEeccCCCC--CCCCCCeEEEEEeC
Confidence 34555443 44555555543346899999999953 24558999998653
No 27
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=42.43 E-value=12 Score=34.16 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=13.0
Q ss_pred hHHHHhccccccccc
Q 009892 364 RLSQYAALFLPFRNT 378 (523)
Q Consensus 364 ~ll~LAaLlhpi~k~ 378 (523)
..+.+|+||||+||.
T Consensus 42 ~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 42 QKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHcCC
Confidence 457889999999998
No 28
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=39.64 E-value=37 Score=34.59 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCC-CCCeEEEEcCCChH
Q 009892 77 TKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGS 125 (523)
Q Consensus 77 ~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~-~~DiDi~~~~~~~~ 125 (523)
..+.+.+.+.++....+..+-++||+=| |++ ++|+||.+....+.
T Consensus 160 ~~i~~~i~~~l~~~~~~~~v~i~GSyRR----gket~gDvDilit~~~~~ 205 (360)
T 2ihm_A 160 EALQQLIEAAVRQTLPGATVTLTGGFRR----GKLQGHDVDFLITHPEEG 205 (360)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHT----TCSEESEEEEEEECSSTT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEcccccc----CCCccCCeEEEEecCChh
Confidence 3567778888887766777777777655 665 79999999765443
No 29
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=37.66 E-value=37 Score=27.42 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=26.8
Q ss_pred HHHHHHHHHh-cCCCCeEEEEchHHHHHHcCCCC-CCeEEEEcC
Q 009892 80 FSCLLNTLRH-FNLETVLRVAGGWVRDKLLGKDC-YDIDIALDN 121 (523)
Q Consensus 80 ~~~l~~~~~~-~~~~~~~yiVGG~VRD~LLg~~~-~DiDi~~~~ 121 (523)
++.+.+.+++ ++ ...+|+-|-+.|.-. .+- .||||++-.
T Consensus 4 l~~i~~~l~~~~~-~~~v~LFGS~ArG~~--~~~~SDiDllV~~ 44 (96)
T 1ylq_A 4 MKEIKEITKKDVQ-DAEIYLYGSVVEGDY--SIGLSDIDVAIVS 44 (96)
T ss_dssp HHHHHHHHHHHCT-TCEEEEESHHHHCCS--SSCCCSEEEEEEC
T ss_pred HHHHHHHHHHHcC-CcEEEEEEEEEeCCC--CCCCCceEEEEEe
Confidence 4455566665 43 378999999999642 344 699998754
No 30
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=35.22 E-value=60 Score=32.64 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCC-CCCeEEEEcCC
Q 009892 77 TKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNM 122 (523)
Q Consensus 77 ~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~-~~DiDi~~~~~ 122 (523)
..+.+.+.+.++....+..+-++|++=| |++ ++|+||.+...
T Consensus 156 ~~ia~~i~~~l~~~~~~~~v~i~GS~RR----gket~gDiDilit~~ 198 (335)
T 2fmp_A 156 LQMQDIVLNEVKKVDSEYIATVCGSFRR----GAESSGDMDVLLTHP 198 (335)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHT----TCSEESSEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCCcEEEecccccc----ccCccCCeEEEEECC
Confidence 4566778888887766677777776554 665 79999998754
No 31
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=32.01 E-value=48 Score=33.04 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=38.2
Q ss_pred cccceecChhhHHHHHHHH----HHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcC
Q 009892 66 VRDKIELTDTETKIFSCLL----NTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (523)
Q Consensus 66 ~~~~i~l~~~e~~i~~~l~----~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~ 121 (523)
+...|..|++|.+....+. ++++..-.+.++++.|-++... +.+..|||+++..
T Consensus 23 l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~--~~~~SDiDl~v~~ 80 (349)
T 4fh3_A 23 VYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGL--ALKNSDMDLCVLM 80 (349)
T ss_dssp HHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTC--CBSSCCEEEEEEC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCC--CCCCCCEEEEEec
Confidence 3467788999987655444 4455544578999999998643 4567899998854
No 32
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=31.65 E-value=50 Score=26.73 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcC
Q 009892 77 TKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (523)
Q Consensus 77 ~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~ 121 (523)
+.+.+.+...++.++ -..+|+-|-.+|.- -.+-.||||++..
T Consensus 10 ~~l~~~i~~l~~~~~-v~~v~LFGS~arG~--~~~~SDiDl~V~~ 51 (98)
T 1wot_A 10 RARREAVLSLCARHG-AVRVRVFGSVARGE--AREDSDLDLLVAF 51 (98)
T ss_dssp HHHHHHHHHHHHHHT-CSSCEECSHHHHTC--CCTTCCCEEEECC
T ss_pred HHHHHHHHHHHHHcC-CcEEEEEccccCCC--CCCCCCEEEEEEe
Confidence 345555555666665 35689999999963 2345899999854
No 33
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=31.05 E-value=88 Score=30.76 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCeEEEEchH-HHHHHcCCCCCCeEEEEcCCChHHHH
Q 009892 75 TETKIFSCLLNTLRHFNLETVLRVAGGW-VRDKLLGKDCYDIDIALDNMMGSEFA 128 (523)
Q Consensus 75 ~e~~i~~~l~~~~~~~~~~~~~yiVGG~-VRD~LLg~~~~DiDi~~~~~~~~~f~ 128 (523)
.|+.+++.+++.++.-. ..++-+.||. ++.-.-.-+-.|+||++-......|.
T Consensus 5 ~e~em~~~i~~~a~~d~-rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~~~~~ 58 (294)
T 2pbe_A 5 SEQEMMDIFLDFALNDE-RIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVESFK 58 (294)
T ss_dssp CHHHHHHHHHHHHHHCT-TEEEEEEC------------CCCEEEEEEESCHHHHH
T ss_pred CHHHHHHHHHHHHcCCc-CEEEEEEecCCCCCCCCCCCcccceEEEEEcCchHhh
Confidence 57889999999998753 3444455554 44334444568999977554444443
No 34
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=28.37 E-value=67 Score=26.78 Aligned_cols=42 Identities=19% Similarity=0.083 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCC
Q 009892 79 IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122 (523)
Q Consensus 79 i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~ 122 (523)
+.+.+...++.++.-..+|+-|-++|.- ..+-.||||++...
T Consensus 19 l~~~~~~l~~~~~~v~~v~LFGS~ArG~--~~~~SDIDl~V~~~ 60 (111)
T 2rff_A 19 AKEIVEEVASSFPNLEEVYIFGSRARGD--YLDTSDIDILFVFK 60 (111)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESHHHHSC--CCTTCCEEEEEEES
T ss_pred HHHHHHHHHHHcCCccEEEEEeeeecCC--CCCCCCEEEEEEec
Confidence 3334444444553235799999999953 23558999998643
No 35
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=23.88 E-value=99 Score=33.32 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCC-CCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCC
Q 009892 77 TKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155 (523)
Q Consensus 77 ~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~-~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~ 155 (523)
..+.+.+.+.++.......+-++|+.=| |++ ++|+||.+....+..+ .+.+...+.- ..++...+.
T Consensus 164 ~~~~~~i~~~l~~~~~~~~~~~~Gs~RR----gke~~gDiD~li~~~~~~~v----~~~l~~~~~~----~~~~~~g~~- 230 (575)
T 3b0x_A 164 LSLARSLLEAIRALPGVERAELCGSARR----YKDTVGDLDFLVASREGERA----VEGFVRLPQV----KEVYAKGKE- 230 (575)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEECHHHHT----TCSEESSEEEEEECSSHHHH----HHHHHTSTTE----EEEEEECSS-
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcccccc----CCCccCCeEEEEeCCCHHHH----HHHHHhCcch----hhHhhcCCC-
Confidence 3456677777777654555555555444 665 7899999987665543 3444433211 122322221
Q ss_pred CcceeeEEEEE-cCeEEEeeecccccccCCCCCccccc-C------CHHHHHhcCCCCcccee
Q 009892 156 SKHLETATMKL-YDLWIDFVNLRCEDYSENSRIPTMRF-G------TAEEDAYRRDLTINSLF 210 (523)
Q Consensus 156 ~k~~~t~~~~~-~g~~iD~~~~R~e~y~~~~r~p~v~~-g------t~~eDl~RRDFTINAla 210 (523)
| +++++ .|..|||--.-.+.|.. -..-| | .+..=+..|.+++|.-.
T Consensus 231 -k----~~~~~~~~~rvDl~~~~~~~~~~----al~~~TGs~~~n~~lR~~A~~~g~~l~~~g 284 (575)
T 3b0x_A 231 -R----ATVFLKNGLQVDLRVVPPESYGA----GLQYLTGSAAHSIRLRALAQEKGLKLSEYG 284 (575)
T ss_dssp -E----EEEEETTSCEEEEEEECGGGHHH----HHHHHHCCHHHHHHHHHHHHHTTCEEETTE
T ss_pred -c----eEEEccCCcEEEEEEECHHHHHH----HHHHhhCCHHHHHHHHHHHHHcCCCcchhh
Confidence 1 33444 57888887666555421 00111 2 35556667888888543
No 36
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=23.74 E-value=48 Score=23.47 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=24.9
Q ss_pred cceecChhhHHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcC
Q 009892 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLG 109 (523)
Q Consensus 68 ~~i~l~~~e~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg 109 (523)
-+|.||++|...++.. ++..|.. +.-++|..+||
T Consensus 18 i~vRlt~eE~~~l~~~---A~~~g~s-----~SeyiR~~~l~ 51 (51)
T 2ba3_A 18 RTLRFSPVEDETIRKK---AEDSGLT-----VSAYIRNAALN 51 (51)
T ss_dssp EEEEECHHHHHHHHHH---HHHHTCC-----HHHHHHHHHHC
T ss_pred EEEEECHHHHHHHHHH---HHHhCCC-----HHHHHHHHHcC
Confidence 4688999999887654 4444432 68999998886
Done!