Query 009894
Match_columns 523
No_of_seqs 251 out of 594
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x3z_A Peptide: N-glycanase; h 100.0 1E-83 3.5E-88 654.8 26.0 272 21-296 42-319 (335)
2 2f4m_A Peptide N-glycanase; gl 100.0 4.7E-76 1.6E-80 591.8 29.4 277 20-296 2-281 (295)
3 2qsf_A RAD4, DNA repair protei 100.0 3.2E-34 1.1E-38 307.8 16.8 285 27-355 53-387 (533)
4 3isr_A Transglutaminase-like e 99.5 2.4E-14 8.1E-19 143.7 11.6 101 78-223 143-250 (293)
5 2g9g_A Pngase, peptide N-glyca 99.4 1.7E-16 5.8E-21 154.3 -11.8 132 301-441 16-155 (221)
6 2q3z_A Transglutaminase 2; tra 98.9 6.4E-10 2.2E-14 122.8 6.8 55 154-208 273-364 (687)
7 1vjj_A Protein-glutamine gluta 98.7 1E-08 3.5E-13 113.3 6.3 59 148-206 257-357 (692)
8 1ex0_A Coagulation factor XIII 98.7 1.4E-08 4.9E-13 112.7 6.1 58 148-205 300-399 (731)
9 1g0d_A Protein-glutamine gamma 98.7 1.8E-08 6E-13 111.4 6.8 58 148-205 257-358 (695)
10 3kd4_A Putative protease; stru 98.4 2.7E-07 9.1E-12 98.3 7.3 88 78-205 245-345 (506)
11 2i74_A Pngase; beta-sandwich, 97.5 7E-07 2.4E-11 85.3 -9.6 101 331-440 7-114 (189)
12 4fgq_A Periplasmic protein; DU 95.4 0.034 1.2E-06 53.3 7.8 111 78-233 44-164 (193)
13 3po3_S Transcription elongatio 92.1 0.16 5.5E-06 47.7 5.2 127 3-141 44-177 (178)
14 1pqv_S STP-alpha, transcriptio 82.7 2.9 9.8E-05 42.2 7.8 126 4-141 176-308 (309)
15 2ija_A Arylamine N-acetyltrans 69.0 11 0.00036 37.5 7.4 67 148-216 62-144 (295)
16 2bsz_A Arylamine N-acetyltrans 67.4 13 0.00045 36.6 7.7 67 148-216 62-143 (278)
17 1e2t_A NAT, N-hydroxyarylamine 65.8 12 0.00041 37.0 7.1 67 148-216 61-141 (284)
18 3d9w_A Putative acetyltransfer 59.6 7.8 0.00027 38.6 4.4 67 148-215 71-150 (293)
19 1w4t_A Arylamine N-acetyltrans 59.0 6.2 0.00021 39.5 3.6 67 148-216 82-164 (299)
20 2vfb_A Arylamine N-acetyltrans 58.1 21 0.00072 35.2 7.2 67 148-216 59-143 (280)
21 1w5r_A Arylamine N-acetyltrans 57.9 17 0.0006 35.7 6.6 67 148-216 62-146 (278)
22 3lnb_A N-acetyltransferase fam 54.0 12 0.0004 37.9 4.6 65 148-214 88-167 (309)
23 1tfi_A Transcriptional elongat 52.8 9.2 0.00031 28.9 2.8 41 96-141 8-49 (50)
24 1l1o_C Replication protein A 7 51.4 12 0.00042 34.5 4.1 73 81-203 29-109 (181)
25 2akl_A PHNA-like protein PA012 49.6 5.7 0.0002 36.1 1.4 29 96-139 26-54 (138)
26 2fiy_A Protein FDHE homolog; F 46.2 37 0.0013 34.3 6.9 43 94-145 180-224 (309)
27 2fiy_A Protein FDHE homolog; F 45.5 12 0.00041 37.9 3.2 47 92-139 216-263 (309)
28 1vk6_A NADH pyrophosphatase; 1 44.2 16 0.00054 35.8 3.7 45 80-145 96-140 (269)
29 1qyp_A RNA polymerase II; tran 42.1 12 0.00041 28.4 2.0 37 98-139 16-53 (57)
30 3u50_C Telomerase-associated p 40.9 9.2 0.00031 35.8 1.4 72 81-201 27-103 (172)
31 1dvp_A HRS, hepatocyte growth 38.1 50 0.0017 31.0 6.0 14 93-106 157-170 (220)
32 1dxg_A Desulforedoxin; non-hem 36.5 8.3 0.00028 27.1 0.3 16 125-140 2-17 (36)
33 3zyq_A Hepatocyte growth facto 34.5 86 0.0029 29.8 7.1 76 20-106 86-173 (226)
34 2pjk_A 178AA long hypothetical 33.9 22 0.00074 32.7 2.7 116 348-464 35-177 (178)
35 4esj_A Type-2 restriction enzy 32.0 20 0.00067 35.7 2.1 30 98-138 35-65 (257)
36 1x0t_A Ribonuclease P protein 30.3 15 0.0005 32.3 0.8 18 127-144 92-109 (120)
37 4e2x_A TCAB9; kijanose, tetron 29.8 57 0.002 32.5 5.2 109 97-206 12-140 (416)
38 3rfq_A Pterin-4-alpha-carbinol 28.9 13 0.00045 34.7 0.4 71 394-465 98-183 (185)
39 3j21_i 50S ribosomal protein L 28.1 31 0.0011 29.0 2.4 27 98-138 36-62 (83)
40 3j20_Y 30S ribosomal protein S 27.8 19 0.00065 27.2 1.0 26 99-138 21-46 (50)
41 3o9x_A Uncharacterized HTH-typ 27.4 13 0.00044 31.6 -0.0 41 99-140 4-47 (133)
42 3iz5_m 60S ribosomal protein L 26.5 36 0.0012 29.1 2.5 27 99-139 38-64 (92)
43 2k3r_A Ribonuclease P protein 26.3 17 0.0006 32.0 0.6 20 126-145 86-105 (123)
44 3jyw_9 60S ribosomal protein L 24.7 34 0.0012 28.0 2.0 27 98-138 27-53 (72)
45 3iwt_A 178AA long hypothetical 24.5 30 0.001 31.2 1.9 34 431-464 143-177 (178)
46 3pzy_A MOG; ssgcid, seattle st 23.9 39 0.0013 30.6 2.5 116 348-465 22-159 (164)
47 3izc_m 60S ribosomal protein R 23.7 41 0.0014 28.8 2.4 27 98-138 37-63 (92)
48 3w0f_A Endonuclease 8-like 3; 21.5 44 0.0015 33.6 2.5 33 96-138 250-282 (287)
49 4a17_Y RPL37A, 60S ribosomal p 21.1 37 0.0013 29.6 1.6 27 99-139 38-64 (103)
50 2qjx_A Protein BIM1; calponin 20.8 50 0.0017 29.5 2.5 11 82-92 99-109 (127)
51 2e9h_A EIF-5, eukaryotic trans 20.2 1.1E+02 0.0037 28.3 4.7 50 78-141 89-138 (157)
52 2k4x_A 30S ribosomal protein S 20.1 56 0.0019 25.0 2.3 29 97-139 18-46 (55)
No 1
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=100.00 E-value=1e-83 Score=654.82 Aligned_cols=272 Identities=36% Similarity=0.722 Sum_probs=256.9
Q ss_pred hhHHHHHhhhhhhch-hcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHhhc-CeeecCC
Q 009894 21 GQFEETVHPYISKVL-MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNAP 98 (523)
Q Consensus 21 ~~f~~~l~~~~~~v~-~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~WFK~~-F~wv~~P 98 (523)
++|+++|++++++|+ +||||.+|++||++||||+|+++|.+...+.++.++++ .++|.+|++||+|||++ |+|||+|
T Consensus 42 ~~f~~~l~~~s~~~~~~Yed~~~~~~al~~iP~d~l~~~a~~~~~~~~~~~~~~-~~~d~ll~~LL~WFk~~fF~wvn~p 120 (335)
T 1x3z_A 42 NQFAQGVLGQSQHLCTVYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGEN-IYTDYLVKELLRYFKQDFFKWCNKP 120 (335)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHSCHHHHHHHHHHHHHHCCSSSSCT-HHHHHHHHHHHHHHHHTTCEECSSC
T ss_pred HHHHHHHHHHHHhHHHHhCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCCCcc-chhHHHHHHHHHHHHhcCCEeeCCC
Confidence 589999999999999 99999999999999999999999987666655555654 45678999999999997 8999999
Q ss_pred CCCCCCCCc---cc-cCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHHHcCC
Q 009894 99 PCDGCSNET---VG-QGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGY 174 (523)
Q Consensus 99 ~C~~Cg~~t---~~-~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCge~A~lF~~l~RalGl 174 (523)
||+.||+++ .. +|+.+|+++|..+||++||+|+|++||+.+||||||+|.++|+||+|+|+|||+||+++|||+|+
T Consensus 121 ~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPRYn~~~~ll~tr~G~C~e~A~lF~~llRalGi 200 (335)
T 1x3z_A 121 DCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGL 200 (335)
T ss_dssp CCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHHHHHHHHHHHHHTTTC
T ss_pred CccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccCCcCCHHHHHHhCCcChHHHHHHHHHHHHHCCC
Confidence 999999985 45 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccc
Q 009894 175 ESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIA 254 (523)
Q Consensus 175 ~aR~V~d~~dHvW~EVy~~~~~rWI~vDP~~~~vD~Pllye~gwgK~lsYVIAFs~dGv~DVTrRYt~~~~~~~~RR~rv 254 (523)
|||||++.++|+|+|||+++.++|||||||++++|+|++|+.||+|+|+|||||++||++|||+||+.+ + .+ +|.+|
T Consensus 201 ~aR~V~~~~~H~W~EV~~~~~~rWv~vDp~~~~id~P~~ye~gw~k~msYVIAFs~dgv~DVT~RY~~~-~-~l-rR~rv 277 (335)
T 1x3z_A 201 DVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQ-N-EL-PRDQI 277 (335)
T ss_dssp CEEEEEETTTEEEEEEEETTTTEEEEEETTTTEESCTHHHHTTSCCCBCCEEEEETTEEEECHHHHCSS-S-BC-CCCSS
T ss_pred CeEEEecCCCcEEEEEEECCCCCEEEECCCCCccCCCceeecCCCCceEEEEEEcCCCCEECHHHhCcC-C-cc-ccccC
Confidence 999999999999999999998899999999999999999999999999999999999999999999999 4 44 88899
Q ss_pred cHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhh
Q 009894 255 TEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD 296 (523)
Q Consensus 255 ~E~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~~ 296 (523)
+|+||..+|..||.++|.++|++++..|++||..|..||...
T Consensus 278 ~e~wl~~~L~~l~~~~r~~~s~~e~~~L~~Rd~~E~~EL~~~ 319 (335)
T 1x3z_A 278 KEEDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIRG 319 (335)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999855
No 2
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=100.00 E-value=4.7e-76 Score=591.75 Aligned_cols=277 Identities=42% Similarity=0.782 Sum_probs=259.5
Q ss_pred hhhHHHHHhhhhhhchhcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCC-CCchhHHHHHHHHHHHHhhc-CeeecC
Q 009894 20 SGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKP-SKTEQDHAFLLQLLFWFKQT-FRWVNA 97 (523)
Q Consensus 20 ~~~f~~~l~~~~~~v~~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~-~~~~~~~~~l~~LL~WFK~~-F~wv~~ 97 (523)
.++|+++|++++++|++||||.+|++||++|||++|+++|.+.+...++..+ ...++++.+|++||+|||++ |+|||+
T Consensus 2 ~~~f~~~l~~~~~~~~~yed~~~~~~al~~ip~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~wFk~~fF~~~~~ 81 (295)
T 2f4m_A 2 DSTILKVLQSNIQHVQLYENPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHWFKEEFFRWVNN 81 (295)
T ss_dssp CSHHHHHHHHHHHHHHGGGCHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSTTSCSCCSHHHHHHHHHHHHHHTTCEECSS
T ss_pred chHHHHHHHHHHhhHHhhCCHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHhcCCEEeCC
Confidence 4679999999999999999999999999999999999999887654333221 12234678999999999997 899999
Q ss_pred CCCCCCCCCccccCC-CCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHHHcCCCe
Q 009894 98 PPCDGCSNETVGQGM-GTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYES 176 (523)
Q Consensus 98 P~C~~Cg~~t~~~g~-~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCge~A~lF~~l~RalGl~a 176 (523)
|||+.||++|...|+ ++|+++|..+||++||.|+|..|+..+||||||+|.++|++|+|+|+|||++|+++||++||||
T Consensus 82 P~c~~C~~~~~~~g~~~~~~~~e~~~~a~~vE~y~c~~c~~~~~~pr~~~~~~~l~~r~G~C~d~A~lf~al~Ra~GIpA 161 (295)
T 2f4m_A 82 IVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRALGFEA 161 (295)
T ss_dssp CCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEESHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcccCCcccccCCCCCCChhHhhcccchhheeeccccCceeecCCCCCHHHHHHcCCEeeHHHHHHHHHHHHHCCCCE
Confidence 999999999998888 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccccH
Q 009894 177 RLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATE 256 (523)
Q Consensus 177 R~V~d~~dHvW~EVy~~~~~rWI~vDP~~~~vD~Pllye~gwgK~lsYVIAFs~dGv~DVTrRYt~~~~~~~~RR~rv~E 256 (523)
|||.++.+|+|+|||+++.++||+||||+++++.|++|+.||+++|+|||||+.||++|||+||+.+|+.+.++|.+|+|
T Consensus 162 R~V~Gy~~HaW~Evy~~g~~gWv~~Dpt~~~~~~p~~~e~gwgr~lsYViAf~~D~a~DVT~RY~~~~~~~~~rR~~v~e 241 (295)
T 2f4m_A 162 RYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKE 241 (295)
T ss_dssp EEEEETTTEEEEEEEETTTTEEEEEETTTTEESCGGGTTTTSCCCCCCEEEECSSCEEECGGGGCSCHHHHHHHCCSSCH
T ss_pred EEEcCCCCEEEEEEEECCCCeEEEEeCCcCccCCCceEeeccCCCceEEEEECCccCccchhhcccchHHHHhhccCCCH
Confidence 99999999999999999877999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhh
Q 009894 257 QTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD 296 (523)
Q Consensus 257 ~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~~ 296 (523)
+||..+|..||.++|.++|++++.+|++||..|..||...
T Consensus 242 ~wl~~~l~~l~~~~r~~~s~~e~~~l~~Rd~~E~~el~~~ 281 (295)
T 2f4m_A 242 ELLRETINGLNKQRQLSLSESRRKELLQRIIVELVEFISP 281 (295)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHhHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999744
No 3
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=100.00 E-value=3.2e-34 Score=307.82 Aligned_cols=285 Identities=16% Similarity=0.131 Sum_probs=188.4
Q ss_pred HhhhhhhchhcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCch-hH---HHHHHHHHHHHhhcCeeecCCCCCC
Q 009894 27 VHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTE-QD---HAFLLQLLFWFKQTFRWVNAPPCDG 102 (523)
Q Consensus 27 l~~~~~~v~~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~-~~---~~~l~~LL~WFK~~F~wv~~P~C~~ 102 (523)
|..+..+..-++|+.+|+.++++||-..+.. +. ....+.... .+ ...|+.|+.|||+.|+ ++.| ...
T Consensus 53 L~H~~~RN~W~nD~~lq~~L~sllP~~i~~~-----l~--p~~~~~~~~~~~~~~~~~Lk~L~~ww~~~F~-it~p-~~~ 123 (533)
T 2qsf_A 53 MVHGFIRNEWINSKRLSRKLSNLVPEKVFEL-----LH--PQKDEELPLRSTRKLLDGLKKCMELWQKHWK-ITKK-YDN 123 (533)
T ss_dssp HHHHHHHHHHHTCHHHHHHHGGGSCHHHHHH-----TS--CCCCSSCTHHHHHHHHHHHHHHHHHHHHHCC-EECC-CSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhCCHHHHHh-----hC--cCCCccccccchHHHHHHHHHHHHHHHhhEE-EcCC-ccC
Confidence 5555555667899999999999999544321 11 111111111 11 1368999999999985 3444 244
Q ss_pred CCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHHHcCCCeEEEEeC
Q 009894 103 CSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDF 182 (523)
Q Consensus 103 Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCge~A~lF~~l~RalGl~aR~V~d~ 182 (523)
||... +.-.|.... .++.| ..++..++++.+++++++|+|++||+||+++|||+|++||+|++.
T Consensus 124 ~g~~~-------~~w~e~~~~-------~~~~~--~f~~~~~~~f~~~~~~~~Gs~d~~AqlF~aLlRalG~~aRlV~SL 187 (533)
T 2qsf_A 124 EGLYM-------RTWKEIEMS-------ANNKR--KFKTLKRSDFLRAVSKGHGDPDISVQGFVAMLRACNVNARLIMSC 187 (533)
T ss_dssp CTTSC-------CCHHHHHHT-------TTTCC--CEECCCHHHHHHHHHHTEECHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCccc-------cCccccchh-------hcccc--ccccccHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCceEEEecc
Confidence 44421 111122110 11111 113344678999999999999999999999999999999999752
Q ss_pred -------------------------CCeeEEEEEeCCCCCeEEeccCCC-cC---CCCeeeec-----CccCccceEEee
Q 009894 183 -------------------------TDHVWTECFSQSLGRWMHLDPCEG-IY---DRPLLYEK-----GWNKKLNYVIAI 228 (523)
Q Consensus 183 -------------------------~dHvW~EVy~~~~~rWI~vDP~~~-~v---D~Pllye~-----gwgK~lsYVIAF 228 (523)
.+|+|+|||++.+++|||||||++ ++ +.|.+||. +|+++|+|||||
T Consensus 188 qP~~f~~~k~~~~~~k~~~~~~~~~~P~~W~EV~s~~~~rWi~VDp~~~~~id~~~~~~~~Ep~~~~~~~~~~m~YViAf 267 (533)
T 2qsf_A 188 QPPDFTNMKIDTSLNGNNAYKDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAY 267 (533)
T ss_dssp CCCCTTCCBSCCCCC---CHHHHTTSCSEEEEEEETTTTEEEEEESSSSCEEECCSSCCTTSCCSTTTTSSCCCCEEEEE
T ss_pred ccccccccccccCcccCCccccccCCCeEEEEEEEcCCCeEEEEeccccccccccccccccccccccccccCceeEEEEE
Confidence 379999999999999999999985 44 56788885 399999999999
Q ss_pred cCC-cceechhhhccChHHhhhhcccc-----cHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhhhcCCC-
Q 009894 229 SKD-GVFDVTKRYTRKWHEVLSRRNIA-----TEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTD- 301 (523)
Q Consensus 229 s~d-Gv~DVTrRYt~~~~~~~~RR~rv-----~E~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~~~~~~~- 301 (523)
+.| +++|||+||+.+|+.. .+|.++ .++||..+|+.++++.+ ..+|..|..||......+.
T Consensus 268 ~~d~~~kDVT~RY~~~~~~k-~rr~Ri~~~~~~~~W~~~~L~~~~~~~~-----------~~~d~~Ed~el~~~~~~e~~ 335 (533)
T 2qsf_A 268 DRKYGCRDVTRRYAQWMNSK-VRKRRITKDDFGEKWFRKVITALHHRKR-----------TKIDDYEDQYFFQRDESEGI 335 (533)
T ss_dssp CTTCCEEECHHHHCTTCCCC-CGGGSGGGSHHHHHHHHHHHHHHCCSCC-----------CHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCceEecchhhhhchhhh-hheeeecCCcchHHHHHHHHHHHhcCCc-----------cccchhHHHHHHHHHhcCCC
Confidence 987 6899999999999654 355565 48999999998875211 3456667777654332221
Q ss_pred CCC-CCCCCCccccHHHHHhhcCCCCCCCCCcCCCCCCceeecc----cceeeEeeccc
Q 009894 302 DAP-VSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCID----EHVTTIYNAFS 355 (523)
Q Consensus 302 ~~~-~~l~GRqSGS~eWr~aRGE~G~~~~~s~~~s~cp~~~c~d----~hv~~iY~a~~ 355 (523)
+++ +++. .++.+-. |--...+.++.|..-|++.|.. ..+..||....
T Consensus 336 P~s~~~fK----~HP~yvL---er~L~k~E~i~P~a~~~g~~~~~~k~~~~E~VY~R~~ 387 (533)
T 2qsf_A 336 PDSVQDLK----NHPYYVL---EQDIKQTQIVKPGCKECGYLKVHGKVGKVLKVYAKRD 387 (533)
T ss_dssp CSSTGGGT----TCSSEEE---GGGSCTTEEECTTCCCSEEEECCSTTCCEEEEEEGGG
T ss_pred CccHHHHc----CCcHhhh---hhhhccceeeCCCCceeeEEecCcCCCcccceeehhh
Confidence 111 1110 0111111 1112345567777788998874 33458998876
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.4e-14 Score=143.69 Aligned_cols=101 Identities=14% Similarity=0.265 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCcc
Q 009894 78 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 157 (523)
Q Consensus 78 ~~~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~Gr 157 (523)
...+++|.+|..+.|+|.....= . -.++.++|++|+|.
T Consensus 143 ~~~~~ai~~~v~~~~~Y~~~~~~---------~---------------------------------~~~a~~~l~~~~G~ 180 (293)
T 3isr_A 143 YSKVLAITDWIYNNVEYISGSTN---------S---------------------------------QTSAFDTITERAGV 180 (293)
T ss_dssp HHHHHHHHHHHHHHSEECTTSCC---------T---------------------------------TCCHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHhhcEEeccCCC---------C---------------------------------CCCHHHhhcCCcEe
Confidence 35799999999999988543220 0 02468899999999
Q ss_pred chhhHHHHHHHHHHcCCCeEEEEe-------CCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccc
Q 009894 158 CGEWANCFTLYCRAFGYESRLILD-------FTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLN 223 (523)
Q Consensus 158 Cge~A~lF~~l~RalGl~aR~V~d-------~~dHvW~EVy~~~~~rWI~vDP~~~~vD~Pllye~gwgK~ls 223 (523)
|.++|++|+++||++|||||||.. ...|+|+|||.++ +|+++||+.+..+. .++..++|+.-+
T Consensus 181 C~d~A~l~val~Ra~GIPAR~VsGy~~~~~~~~~HAW~Evyl~g--gWv~~DpT~~~~~~-~~I~vA~GRD~~ 250 (293)
T 3isr_A 181 CRDFAHLGIALCRALSIPARYFTGYAFKLNPPDFHACFEAYIGG--NWIIFDATRLVPLN-GLVKIATGRDAA 250 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEETTCSSCCEEEEEEEEETT--EEEEECTTCCSCGG-GEEEEEEESSGG
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCeEEEEEEEECC--cEEEEECCCCCCCC-CeEEEEECCCHH
Confidence 999999999999999999999953 3569999999996 79999999886543 455566766433
No 5
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29
Probab=99.44 E-value=1.7e-16 Score=154.31 Aligned_cols=132 Identities=21% Similarity=0.250 Sum_probs=92.7
Q ss_pred CCCCCCCCCCccccHHHHHhhcCCCCCC-CCCcCCCCCCceeecccceeeEeeccc---hhhhccccCC-CchhhHHHHH
Q 009894 301 DDAPVSLPGRQSGDKEWRISRSEIGSDD-NCSLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELL 375 (523)
Q Consensus 301 ~~~~~~l~GRqSGS~eWr~aRGE~G~~~-~~s~~~s~cp~~~c~d~hv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~ 375 (523)
++++.++.||+|||++||.||||+|... ..++.|++. ++.+.+|+..||... .+.++..+.- .|.+++..+.
T Consensus 16 ~~~~~e~~GRtSGSl~WR~aRGE~g~~~~~~v~~p~e~---e~~~~~f~f~Y~~~~D~Ysr~~~n~~~i~gW~s~~~~~~ 92 (221)
T 2g9g_A 16 PRGSHELGGRVSGSLAWRVARGETGLERKEILFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKME 92 (221)
T ss_dssp --------CEECSSEEEC---------CCCCEECCCHH---HHHHTEEEEEEETTTTEEEEGGGTTEEEESGGGGCSSEE
T ss_pred CCCccccCCcccccHHHHHHhhccccCcCceeeccchh---hhhCCEEEEEEeccCcEEEEecCCCccccchhhcccccc
Confidence 3567899999999999999999998742 348999999 999999999999988 5555443333 6999999999
Q ss_pred HHHHHHHhhccCCCcccccccccCCCCchhHHHHhh-ccchHHHHHhhccc--cccCCCCCeEEEecCC
Q 009894 376 KILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL-LPSIGHLLRVLSLK--SELNTDGRVDIVLAGD 441 (523)
Q Consensus 376 ~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~-lps~~~ll~~lslk--~~~~~~g~~~~~~~~~ 441 (523)
.||||++.||||+ |.+|++.-+... |-|+| |++.+..+.-|.++ .....+|+|.+++-++
T Consensus 93 nIfRkvE~DWkmv-YLaR~Egt~~g~-----IsWkFdl~~~gl~V~ki~I~~~sq~f~~G~v~~~i~~~ 155 (221)
T 2g9g_A 93 SIFRKVEKDWNMV-YLARKEGSSFAY-----ISWKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSE 155 (221)
T ss_dssp SEEEEEETTTTEE-EEEECTTCSEEE-----EEEEEECTTTTEEEEEEEEEEEEEECTTCEEEEEEECS
T ss_pred ceEEEEeCCCceE-EEEEeCCCCEEE-----EEEEEecCCCCcEEEEEEEEEeeEEecCCEEEEEEeCC
Confidence 9999999999999 999988665544 33888 89877677766555 4455799998877764
No 6
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=98.94 E-value=6.4e-10 Score=122.85 Aligned_cols=55 Identities=25% Similarity=0.523 Sum_probs=46.8
Q ss_pred cCccchhhHHHHHHHHHHcCCCeEEE--Ee-----------------------------CCCeeEEEEEeC------CCC
Q 009894 154 KRGRCGEWANCFTLYCRAFGYESRLI--LD-----------------------------FTDHVWTECFSQ------SLG 196 (523)
Q Consensus 154 R~GrCge~A~lF~~l~RalGl~aR~V--~d-----------------------------~~dHvW~EVy~~------~~~ 196 (523)
|.|.|.+||++|+++||++||||||| |. +..|+|+|||.+ +..
T Consensus 273 k~G~C~dfA~~~~~llRalGIPAR~VsGy~~~~~~~~~l~~d~~~~~~g~~~~~~~d~~~~~HAW~Ev~~~rpDLp~g~~ 352 (687)
T 2q3z_A 273 KYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYE 352 (687)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCEEEEEEEEEECC--CCHHHHHHHC---------CCCCBSEEEEEEEEECCTTSSTTCC
T ss_pred ceeehHHHHHHHHHHHHhCCCCcEEEeecccccccccccccccccCCCCceeeecCCcccceeEEEEEEcccCCCCCCCC
Confidence 37999999999999999999999999 31 126999999998 545
Q ss_pred CeEEeccCCCcC
Q 009894 197 RWMHLDPCEGIY 208 (523)
Q Consensus 197 rWI~vDP~~~~v 208 (523)
+|+.+||+.+..
T Consensus 353 GW~~~DpT~~~~ 364 (687)
T 2q3z_A 353 GWQALDPTPQEK 364 (687)
T ss_dssp EEEEECCSSCCC
T ss_pred CEEEECCCCCcc
Confidence 899999997543
No 7
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=98.70 E-value=1e-08 Score=113.34 Aligned_cols=59 Identities=31% Similarity=0.541 Sum_probs=48.5
Q ss_pred HHHHHhc-C----ccchhhHHHHHHHHHHcCCCeEEEEeC-------------------------------CCeeEEEEE
Q 009894 148 LKLVETK-R----GRCGEWANCFTLYCRAFGYESRLILDF-------------------------------TDHVWTECF 191 (523)
Q Consensus 148 ~~LL~tR-~----GrCge~A~lF~~l~RalGl~aR~V~d~-------------------------------~dHvW~EVy 191 (523)
.+.+.+| + |.|.+||++|+++||++|||||+|-++ ..|+|+|+|
T Consensus 257 ~~~~~~~~~PV~~G~C~~fA~~~~~~lR~lGIPaR~Vtgy~s~~d~~~nL~~d~~~~~~g~~~~~~~dsIW~~HaW~E~w 336 (692)
T 1vjj_A 257 KNWKKSGLSPVRYGQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGW 336 (692)
T ss_dssp HHHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEEEECSSSSSEEEEEECTTSCBCCCCSCEEEEEEEEEEEE
T ss_pred HHHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEcccccccCCCCCcccceeeccCCcccccccccccceeEEEEEe
Confidence 3566766 3 999999999999999999999999211 269999999
Q ss_pred eC------CCCCeEEeccCCC
Q 009894 192 SQ------SLGRWMHLDPCEG 206 (523)
Q Consensus 192 ~~------~~~rWI~vDP~~~ 206 (523)
.. +.++|+.+||+.+
T Consensus 337 ~~rpDLp~~~~gW~~~DpT~~ 357 (692)
T 1vjj_A 337 FVRSDLGPSYGGWQVLDATPQ 357 (692)
T ss_dssp ECCTTTCGGGCEEEEECCSCS
T ss_pred ccccCCCCCCCCEEEECCCCC
Confidence 95 2358999999963
No 8
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=98.67 E-value=1.4e-08 Score=112.67 Aligned_cols=58 Identities=24% Similarity=0.600 Sum_probs=48.8
Q ss_pred HHHHHhcC----ccchhhHHHHHHHHHHcCCCeEEE--EeC------------------------------CCeeEEEEE
Q 009894 148 LKLVETKR----GRCGEWANCFTLYCRAFGYESRLI--LDF------------------------------TDHVWTECF 191 (523)
Q Consensus 148 ~~LL~tR~----GrCge~A~lF~~l~RalGl~aR~V--~d~------------------------------~dHvW~EVy 191 (523)
.+.+.+|+ |.|.+||++|+.+||++|||||+| |.. ..|+|+|+|
T Consensus 300 ~~~~~~~~PV~~G~C~~fA~v~~~~lR~lGIPaRvVtgy~sa~d~~~~l~v~~~~~~~g~~~~~~~~dsIW~~H~W~E~w 379 (731)
T 1ex0_A 300 LEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAW 379 (731)
T ss_dssp HHHHHHTSCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEECCSCTTBCEEEEEECTTSCBCTTTCCCCCEEEEEEEEEE
T ss_pred HHHHhcCCccceeeehhHHHHHHHHHHhCCCCeeEEcccccCCCCCCcceeeEEecccCccccccccCccceeeEEEEEe
Confidence 45566888 999999999999999999999999 310 249999999
Q ss_pred eC------CCCCeEEeccCC
Q 009894 192 SQ------SLGRWMHLDPCE 205 (523)
Q Consensus 192 ~~------~~~rWI~vDP~~ 205 (523)
.. +.++|+.+||+.
T Consensus 380 ~~rpDLp~g~~GWq~~DpTp 399 (731)
T 1ex0_A 380 MTRPDLPVGFGGWQAVDSTP 399 (731)
T ss_dssp ECCTTSCTTCCEEEEEEEEE
T ss_pred ccccCCCCCCCCeEEEcCCC
Confidence 94 346899999995
No 9
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=98.67 E-value=1.8e-08 Score=111.41 Aligned_cols=58 Identities=26% Similarity=0.466 Sum_probs=48.0
Q ss_pred HHHHHhc-C----ccchhhHHHHHHHHHHcCCCeEEE--EeC-------------------------------CCeeEEE
Q 009894 148 LKLVETK-R----GRCGEWANCFTLYCRAFGYESRLI--LDF-------------------------------TDHVWTE 189 (523)
Q Consensus 148 ~~LL~tR-~----GrCge~A~lF~~l~RalGl~aR~V--~d~-------------------------------~dHvW~E 189 (523)
.+.+.+| + |.|.+||++|+++||++|||||+| |.. ..|+|+|
T Consensus 257 ~~~~~~~~~PV~~G~C~~fA~v~~t~lR~lGIPaR~Vtgy~sa~d~~~nL~id~~~~~~g~~~~~~~~~dsiw~~HaW~E 336 (695)
T 1g0d_A 257 QQWSKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFASAHDVDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVE 336 (695)
T ss_dssp HHHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEETTTTTTCSEEEEEECTTSCBSCTTCCBCSSEEEEEEEE
T ss_pred HHHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEccccccCCCCCccceeeeecccCceecccccCCcceeeEEEEE
Confidence 3446777 5 999999999999999999999999 310 2599999
Q ss_pred EEeC------CCCCeEEeccCC
Q 009894 190 CFSQ------SLGRWMHLDPCE 205 (523)
Q Consensus 190 Vy~~------~~~rWI~vDP~~ 205 (523)
+|.. +.++|+.+||+.
T Consensus 337 ~w~~rpDLp~~~~gWq~~DpTp 358 (695)
T 1g0d_A 337 SWMSREDLPEGNDGWQVLDPTP 358 (695)
T ss_dssp EEECCTTSCTTCCEEEEEECSC
T ss_pred eecccCCCCCCCCCeEEEcCCC
Confidence 9985 345899999996
No 10
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=98.41 E-value=2.7e-07 Score=98.34 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCcc
Q 009894 78 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 157 (523)
Q Consensus 78 ~~~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~Gr 157 (523)
...++++.+|-+..++|+.... .| .|. .-.+|.++|++|.|.
T Consensus 245 ~ek~~~iy~~V~~~i~y~~~~~--~~------~g~------------------------------~~~~a~~vl~~~~G~ 286 (506)
T 3kd4_A 245 QEKVNIIRDHILNNLSTCPIPM--AM------TGY------------------------------TVRDIDTVLRSAYGT 286 (506)
T ss_dssp HHHHHHHHHHHHHHCEECCCCG--GG------GTT------------------------------CCCCHHHHHHHTEEC
T ss_pred HHHHHHHHHHHHhccEecceec--cc------CCC------------------------------CCCCHHHHHHhCCcc
Confidence 4578999999999999973221 01 111 113579999999999
Q ss_pred chhhHHHHHHHHHHcCCCeEEEEe-------------CCCeeEEEEEeCCCCCeEEeccCC
Q 009894 158 CGEWANCFTLYCRAFGYESRLILD-------------FTDHVWTECFSQSLGRWMHLDPCE 205 (523)
Q Consensus 158 Cge~A~lF~~l~RalGl~aR~V~d-------------~~dHvW~EVy~~~~~rWI~vDP~~ 205 (523)
|.+.|+||++||||+|||||+|+- ..+|+|++|+..+ +|.-+||+.
T Consensus 287 C~d~a~Ll~AllRa~GIpA~~v~~~t~~~~~~~~~lp~~nh~i~~v~~~g--~~y~lDat~ 345 (506)
T 3kd4_A 287 PLEIAQLLNVMLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATVDG--KDQYLSASP 345 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEETTSCGGGCCSTTCCEEEEEEEETT--EEEEESSSC
T ss_pred hHHHHHHHHHHHHHCCCCcEEEEEEcCCCCCccCCCCCCCEEEEEEEECC--EEEEEecCC
Confidence 999999999999999999999951 1379999999874 699999984
No 11
>2i74_A Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A {Mus musculus} SCOP: b.18.1.29 PDB: 2g9f_A
Probab=97.46 E-value=7e-07 Score=85.26 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=79.5
Q ss_pred CcCCCCCCceeecccceeeEeeccc---hhhhccccCC-CchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhH
Q 009894 331 SLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQK 406 (523)
Q Consensus 331 s~~~s~cp~~~c~d~hv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~ 406 (523)
++.|++. ++.+.+++..|+... .+.++..+.- .|.+++..+..||||++.||||+ |.+|++..+...
T Consensus 7 v~~p~e~---e~~~~~~~f~Y~~~~D~Y~r~~~n~~~i~gW~s~~~~~~nIfRkvE~Dwkmv-YLaR~Egt~~g~----- 77 (189)
T 2i74_A 7 LFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMESIFRKVEKDWNMV-YLARKEGSSFAY----- 77 (189)
T ss_dssp CBCCCHH---HHHHTEEEEEEETTTTEEEETTTTTEEEESGGGGCSSEESEEEEEETTTTEE-EEEECTTCSEEE-----
T ss_pred EEecchh---hhhCCEEEEEEEccCcEEEEecCCCccccchhhccccccceEEEEeCCCceE-EEEEcCCCCEEE-----
Confidence 7899999 999999999999988 5555443333 69999999999999999999999 999988665544
Q ss_pred HHHhh-ccchHHHHHhhcc--ccccCCCCCeEEEecC
Q 009894 407 IVHQL-LPSIGHLLRVLSL--KSELNTDGRVDIVLAG 440 (523)
Q Consensus 407 ~~~~~-lps~~~ll~~lsl--k~~~~~~g~~~~~~~~ 440 (523)
|-|+| |++.+..+.-|.+ +.+...+|+|.+.+..
T Consensus 78 IsWkFdl~~~gl~v~~i~i~~~sq~f~~G~v~~~~~~ 114 (189)
T 2i74_A 78 ISWKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRS 114 (189)
T ss_dssp EEEEEECGGGTEEEEEEEEECBEEECTTCEEEEEEEC
T ss_pred EEEEEecCCCCcEEEEEEEEEeEEEecCCEEEEEEec
Confidence 33888 8887766664444 4566789999665554
No 12
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A
Probab=95.43 E-value=0.034 Score=53.30 Aligned_cols=111 Identities=16% Similarity=0.268 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCcc
Q 009894 78 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 157 (523)
Q Consensus 78 ~~~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~Gr 157 (523)
...|..+=++|. .++|++...= -|.. | .+..|.+.|..+.|-
T Consensus 44 ~~~L~~VN~~vN-~i~~~~D~~~---------~G~~--------------D--------------yWatP~E~l~~g~GD 85 (193)
T 4fgq_A 44 KIQLEKVNSFFN-QFNYETDPIT---------GASD--------------D--------------YWKSPVEFIVDGGGD 85 (193)
T ss_dssp HHHHHHHHHHHH-TSEECCCTTT---------SSCC--------------S--------------SCCCHHHHHHHTEEC
T ss_pred HHHHHHHHHHHH-hcccccchhh---------cCCC--------------C--------------cCCCcHhHhCCCCcC
Confidence 346777778888 8888876642 2210 0 234689999999999
Q ss_pred chhhHHHHHHHHHHcCCCe---EEEE--e---CCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccce--EEe
Q 009894 158 CGEWANCFTLYCRAFGYES---RLIL--D---FTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNY--VIA 227 (523)
Q Consensus 158 Cge~A~lF~~l~RalGl~a---R~V~--d---~~dHvW~EVy~~~~~rWI~vDP~~~~vD~Pllye~gwgK~lsY--VIA 227 (523)
|.|||.+=...++++|+|+ |+++ + ...|++.=||....++|+-+|-....+ ..|.+.-.| +.+
T Consensus 86 CEDyaI~K~~~L~~~G~p~~~Lri~vVr~~~~~~~HaVL~v~~~~~~~~lVLDNl~~~I-------~p~s~r~dl~p~~S 158 (193)
T 4fgq_A 86 CEDFAIIKYFTLVAVGVPSDQLRITYAASLTLNQAHMVLSFYPTPESEPLILDSLESKI-------LKASARPDLKPVYS 158 (193)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEEEEETTTTEEEEEEEECSSTTSCCEEECSSCSSC-------EEGGGCTTEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCHHHeEEEEEEecCCCCCCEEEEEEECCCCCceEeeCCchhc-------cCchhcCCcceEEe
Confidence 9999999999999999996 6664 3 357999999986556799998764332 134443333 556
Q ss_pred ecCCcc
Q 009894 228 ISKDGV 233 (523)
Q Consensus 228 Fs~dGv 233 (523)
|+..|+
T Consensus 159 fn~~g~ 164 (193)
T 4fgq_A 159 FNAEGL 164 (193)
T ss_dssp ECSSCE
T ss_pred eCCCCe
Confidence 666664
No 13
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=92.07 E-value=0.16 Score=47.69 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHhhccCchhhHHHHHhhhhhhchhcCCHHHHHHHhcc-CChHHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 009894 3 QAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKT-VPVERLEEKSLVSLAREGNFKPSKTEQDHAFL 81 (523)
Q Consensus 3 q~e~~~~~~qq~~~~~~~~~f~~~l~~~~~~v~~YEd~~lq~~Al~~-IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l 81 (523)
-.++|+.+++.+....+.+.+.+++.+.+..+..=.||.|....+.- |+.+.|-......++ +.++......+.
T Consensus 44 A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~isp~~lv~Ms~eEla-----s~elk~~~e~~~ 118 (178)
T 3po3_S 44 AKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLA-----PAPLKQKIEEIA 118 (178)
T ss_dssp HHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHSSSCSHHHHHHHHCCCTTHHHHCCTTTTSS-----CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCCCCCHHHHHHHhcCCCCHHHHHhcCchhhC-----CHHHHHHHHHHH
Confidence 35778888887765445557999999988887766889998877665 777777332111110 001011111122
Q ss_pred HHHHHHHhhcCee-----ecCCCCCCCCCCcc-ccCCCCCChhhhccCCceEEEeeeCCCCccccc
Q 009894 82 LQLLFWFKQTFRW-----VNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 141 (523)
Q Consensus 82 ~~LL~WFK~~F~w-----v~~P~C~~Cg~~t~-~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RF 141 (523)
++-| ++..-.. ++.-+|+.||+... ..-...=++|| ...=-|.|..||+.-||
T Consensus 119 ~e~l--~~~~~~~~~~~~t~~~~Cp~C~~~~a~~~q~Q~rsaDE-----~mt~f~~C~~C~~~w~f 177 (178)
T 3po3_S 119 KQNL--YNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSAAA-----PLTTFCTCEACGNRWKF 177 (178)
T ss_dssp HHHH--HHTBCCCCCCCCBSSSCCSSSCCSCEECCCCCCSCTTS-----CCCCCEEETTTCCEECC
T ss_pred HHHH--HHhhhccccCCCcCCcCCCCCCCCceEEEEeecccCCC-----CCcEEEEcCCCCCeecc
Confidence 2222 4443222 34458999998643 22111112333 22346999999998887
No 14
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=82.73 E-value=2.9 Score=42.18 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhccCchhhHHHHHhhhhhhchhcCCHHHHHHHhcc-CChHHHHHHHHHHHHHcCCCCCCCchhHHHHHH
Q 009894 4 AEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKT-VPVERLEEKSLVSLAREGNFKPSKTEQDHAFLL 82 (523)
Q Consensus 4 ~e~~~~~~qq~~~~~~~~~f~~~l~~~~~~v~~YEd~~lq~~Al~~-IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~ 82 (523)
.++|+.++..+...+.++.+.+++.+.+..+..=.||.|....+.- |+.+.|-......++.. +...+...+.+
T Consensus 176 ~~IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasd-----e~k~~~~~~~~ 250 (309)
T 1pqv_S 176 KAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPA-----PLKQKIEEIAK 250 (309)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCH-----HHHHHHHHHHH
Confidence 4677777777654433334888888887777655799998877765 77677643222112100 00001111222
Q ss_pred HHHHHHhhcC---ee--ecCCCCCCCCCCcc-ccCCCCCChhhhccCCceEEEeeeCCCCccccc
Q 009894 83 QLLFWFKQTF---RW--VNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 141 (523)
Q Consensus 83 ~LL~WFK~~F---~w--v~~P~C~~Cg~~t~-~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RF 141 (523)
+-|+ .... .. ++.-.|+.||.... +.-...=.+|| ...=-|.|..||+.-+|
T Consensus 251 e~l~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~q~Q~rsaDe-----~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 251 QNLY--NAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADE-----PLTTFCTCEACGNRWKF 308 (309)
T ss_pred HHHH--HhhhccccccCcccccCCCCCCCeeEEEEeecccCCC-----CCcEEEEeCCCCCceec
Confidence 2111 1111 12 34567999998643 22111112232 22336999999998777
No 15
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=68.97 E-value=11 Score=37.45 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=46.5
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEE----EeC--------CCeeEEEEEeCCCCCeEEeccCCCcCC---CC
Q 009894 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLI----LDF--------TDHVWTECFSQSLGRWMHLDPCEGIYD---RP 211 (523)
Q Consensus 148 ~~LL-~tR~GrCge~A~lF~~l~RalGl~aR~V----~d~--------~dHvW~EVy~~~~~rWI~vDP~~~~vD---~P 211 (523)
.|++ ..|-|.|-|...+|..++++||++++.+ +.. .+|.=.=|-.++. .| -||..-|..- .|
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~~H~~l~V~idg~-~y-lvDVGFG~~~~~~~P 139 (295)
T 2ija_A 62 DQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGR-NY-IVDAGSGRSYQMWQP 139 (295)
T ss_dssp HHHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSSCCEEEEEEEETTE-EE-EECSCCCGGGCCSSC
T ss_pred HHHhcCCCcEEhHHHHHHHHHHHHHcCCcEEEEEEEEeeCCCCCCCCCCCcEEEEEEECCc-eE-EEeCCCCCccCCCce
Confidence 4555 4577899999999999999999999886 332 3466555666553 56 5677765432 56
Q ss_pred eeeec
Q 009894 212 LLYEK 216 (523)
Q Consensus 212 llye~ 216 (523)
+....
T Consensus 140 l~L~~ 144 (295)
T 2ija_A 140 LELIS 144 (295)
T ss_dssp EECCT
T ss_pred EEccC
Confidence 66543
No 16
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=67.43 E-value=13 Score=36.63 Aligned_cols=67 Identities=24% Similarity=0.212 Sum_probs=48.8
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e--------CCCeeEEEEEeCCCCCeEEeccCCCc--CCCCe
Q 009894 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D--------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPL 212 (523)
Q Consensus 148 ~~LL-~tR~GrCge~A~lF~~l~RalGl~aR~V~----d--------~~dHvW~EVy~~~~~rWI~vDP~~~~--vD~Pl 212 (523)
.|++ ..|-|.|-|...+|..+++++|++++.+. . ..+|.=.=|-.++. .| -||..-|. .-.|+
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~idg~-~y-lvDVGFG~~~~~~Pl 139 (278)
T 2bsz_A 62 DKIVLGGRGGYCFEHNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVELDGR-TY-IADVGFGGLTLTAPL 139 (278)
T ss_dssp HHHTTSCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEETTE-EE-EECSCCSSSCCCSCE
T ss_pred HHHHhCCCCeehHHHHHHHHHHHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEECCc-eE-EEeCCCCccCcCceE
Confidence 4454 36778999999999999999999999873 1 23477677777663 57 57887654 35777
Q ss_pred eeec
Q 009894 213 LYEK 216 (523)
Q Consensus 213 lye~ 216 (523)
....
T Consensus 140 ~L~~ 143 (278)
T 2bsz_A 140 LLEP 143 (278)
T ss_dssp ECCB
T ss_pred EccC
Confidence 7654
No 17
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=65.85 E-value=12 Score=36.97 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=49.2
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e-------CCCeeEEEEEeCCCCCeEEeccCCCc--CCCCee
Q 009894 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D-------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPLL 213 (523)
Q Consensus 148 ~~LL-~tR~GrCge~A~lF~~l~RalGl~aR~V~----d-------~~dHvW~EVy~~~~~rWI~vDP~~~~--vD~Pll 213 (523)
.|++ ..|-|.|-|...+|..+++++|++++.+. . ..+|.=.=|-.++. .| =||..-|. .-.|+.
T Consensus 61 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~idg~-~y-lvDVGFG~~~~~~Pl~ 138 (284)
T 1e2t_A 61 EKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVEDE-QW-IADVGFGGQTLTAPLR 138 (284)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEETTE-EE-EECSCSCTTCCSSCEE
T ss_pred HHHhcCCCcEEhHHHHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEECCc-eE-EEecCCCccCcCceEE
Confidence 5555 45778999999999999999999999873 1 23477677777663 57 57887654 357777
Q ss_pred eec
Q 009894 214 YEK 216 (523)
Q Consensus 214 ye~ 216 (523)
...
T Consensus 139 L~~ 141 (284)
T 1e2t_A 139 LQA 141 (284)
T ss_dssp SCB
T ss_pred ccC
Confidence 654
No 18
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=59.57 E-value=7.8 Score=38.60 Aligned_cols=67 Identities=22% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHH-hcCccchhhHHHHHHHHHHcCCCeEEEEe----------CCCeeEEEE-EeCCCCCeEEeccCCC-cCCCCeee
Q 009894 148 LKLVE-TKRGRCGEWANCFTLYCRAFGYESRLILD----------FTDHVWTEC-FSQSLGRWMHLDPCEG-IYDRPLLY 214 (523)
Q Consensus 148 ~~LL~-tR~GrCge~A~lF~~l~RalGl~aR~V~d----------~~dHvW~EV-y~~~~~rWI~vDP~~~-~vD~Plly 214 (523)
.|++. .|-|.|-|...+|..++++||++++.+.. ..+|.=.=| -.++.++| -||.--| ..-.|+..
T Consensus 71 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~H~~l~V~~l~dg~~y-lvDVGFG~~~~~Pl~L 149 (293)
T 3d9w_A 71 DKLVHSRRGGYCYENAGLFAAALERLGFGVTGHTGRVTMGAGGLRPATHALLRVTTADDDRVW-MCDVGFGRGPLRPYEL 149 (293)
T ss_dssp HHHTSSSCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCSCCCEEEEEEEEECSSCSCEE-EECCSSSSCCSSCEES
T ss_pred HHHHHcCCCcChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCccEEEEEEEcCCCCeE-EEecCCCcCcCccEEe
Confidence 34443 67789999999999999999999888732 123655555 45512356 5777665 22345555
Q ss_pred e
Q 009894 215 E 215 (523)
Q Consensus 215 e 215 (523)
.
T Consensus 150 ~ 150 (293)
T 3d9w_A 150 R 150 (293)
T ss_dssp S
T ss_pred c
Confidence 3
No 19
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=59.01 E-value=6.2 Score=39.48 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=47.6
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e-C--------CCeeEEEEEeCCCCCeEEeccCCCc--CCCC
Q 009894 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D-F--------TDHVWTECFSQSLGRWMHLDPCEGI--YDRP 211 (523)
Q Consensus 148 ~~LL-~tR~GrCge~A~lF~~l~RalGl~aR~V~----d-~--------~dHvW~EVy~~~~~rWI~vDP~~~~--vD~P 211 (523)
.|++ ..|-|.|-|...+|..+++++|++++.+. . . .+|.=.=|-.++ +.| =||..-|. .-.|
T Consensus 82 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~P 159 (299)
T 1w4t_A 82 AKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAE-GEF-LVDVGFGSANPPRA 159 (299)
T ss_dssp HHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETT-EEE-EECSCSGGGCCSSC
T ss_pred HHHHhcCCCcchHhHHHHHHHHHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEECC-ceE-EEeCCCCCcCcCee
Confidence 5666 56778999999999999999999999862 1 1 125555566665 357 57877654 3577
Q ss_pred eeeec
Q 009894 212 LLYEK 216 (523)
Q Consensus 212 llye~ 216 (523)
+....
T Consensus 160 l~L~~ 164 (299)
T 1w4t_A 160 LPLPG 164 (299)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 76654
No 20
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=58.13 E-value=21 Score=35.16 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=47.9
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e---------CCCeeEEEEEeCCCCC--eEEeccCCCc--CC
Q 009894 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D---------FTDHVWTECFSQSLGR--WMHLDPCEGI--YD 209 (523)
Q Consensus 148 ~~LL-~tR~GrCge~A~lF~~l~RalGl~aR~V~----d---------~~dHvW~EVy~~~~~r--WI~vDP~~~~--vD 209 (523)
.|++ ..|-|.|-|...+|..+++++|++++.+. . ..+|.=.=|-.++ +. | -||..-|. .-
T Consensus 59 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg-~~~~y-lvDVGFG~~~~~ 136 (280)
T 2vfb_A 59 DKLVDRRRGGYCYEHNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPG-CQGPY-LVDVGFGGMTPT 136 (280)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEECTT-CSSCE-EECSCSGGGCCS
T ss_pred HHHhcCCCceEhHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEECC-eEEEE-EEecCCCccCcC
Confidence 4454 56788999999999999999999999862 1 1246656666665 35 7 57877654 35
Q ss_pred CCeeeec
Q 009894 210 RPLLYEK 216 (523)
Q Consensus 210 ~Pllye~ 216 (523)
.|+....
T Consensus 137 ~Pl~L~~ 143 (280)
T 2vfb_A 137 APLRLET 143 (280)
T ss_dssp SCEESCB
T ss_pred ceEEccC
Confidence 6776643
No 21
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=57.94 E-value=17 Score=35.70 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=46.9
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----e-C--------CCeeEEEEEeCCCCC--eEEeccCCCc--CC
Q 009894 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D-F--------TDHVWTECFSQSLGR--WMHLDPCEGI--YD 209 (523)
Q Consensus 148 ~~LL-~tR~GrCge~A~lF~~l~RalGl~aR~V~----d-~--------~dHvW~EVy~~~~~r--WI~vDP~~~~--vD 209 (523)
.|++ ..|-|.|-|...+|..+++++|++++.+. . . .+|.=.=|-.++ +. | -||..-|. .-
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg-~~~~y-lvDVGFG~~~~~ 139 (278)
T 1w5r_A 62 AKLVDRRRGGYQYEHNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPG-ADGRY-LVDVGFGGQTLT 139 (278)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTCCCCCEEEEEEEEECSS-CSCCE-EECSCSCTTCCS
T ss_pred HHHhcCCCceehHHHHHHHHHHHHHcCCeEEEEEEEEeeCCCCCCCCCCCccEEEEEEECC-eEEEE-EEecCCCccCcC
Confidence 4454 56788999999999999999999999862 1 1 125545566665 35 7 57877654 35
Q ss_pred CCeeeec
Q 009894 210 RPLLYEK 216 (523)
Q Consensus 210 ~Pllye~ 216 (523)
.|+....
T Consensus 140 ~Pl~L~~ 146 (278)
T 1w5r_A 140 SPIRLEA 146 (278)
T ss_dssp SCEESCS
T ss_pred ceEEccC
Confidence 6776643
No 22
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=53.96 E-value=12 Score=37.92 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=44.1
Q ss_pred HHHH-HhcCccchhhHHHHHHHHHHcCCCeEEEE----eC--------CCeeEEEEEeCCCCCeEEeccCCCcC--CCCe
Q 009894 148 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----DF--------TDHVWTECFSQSLGRWMHLDPCEGIY--DRPL 212 (523)
Q Consensus 148 ~~LL-~tR~GrCge~A~lF~~l~RalGl~aR~V~----d~--------~dHvW~EVy~~~~~rWI~vDP~~~~v--D~Pl 212 (523)
.|++ ..|-|.|-|...+|..+++++|++++.+. .. .+|.=.=|-.++. .| =||.--|.. -.|+
T Consensus 88 ~KiV~~~RGGyC~ElN~lf~~~L~~lGf~v~~~~arV~~~~~~~~~~~~~H~~l~V~~~g~-~y-lvDVGFG~~~p~~Pl 165 (309)
T 3lnb_A 88 EKLLIQKRGGLCYELNSLLYYFLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHNKK-DY-VIDAGFASHLPLHPV 165 (309)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECSTTCEEEEEEEETTE-EE-EECSCSTTCCCCSCE
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHHcCCeEEEEeEEEecCCCCCCCCCCccEEEEEEECCe-EE-EEecCCCCcCcCccE
Confidence 4444 45778999999999999999999999883 21 2466555555543 46 567765532 3454
Q ss_pred ee
Q 009894 213 LY 214 (523)
Q Consensus 213 ly 214 (523)
..
T Consensus 166 pL 167 (309)
T 3lnb_A 166 PF 167 (309)
T ss_dssp ET
T ss_pred ec
Confidence 43
No 23
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=52.81 E-value=9.2 Score=28.92 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=24.9
Q ss_pred cCCCCCCCCCCcc-ccCCCCCChhhhccCCceEEEeeeCCCCccccc
Q 009894 96 NAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 141 (523)
Q Consensus 96 ~~P~C~~Cg~~t~-~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RF 141 (523)
..-+|+.||+... ..-...=++|| ...=-|.|..||..-||
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE-----~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADE-----PMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSS-----CCEEEEEESSSCCEEEC
T ss_pred CccCCCCCCCCEEEEEEecCcCCCC-----CceEEEEcCCCCCeEEe
Confidence 4567999998643 11111112333 33447999999997766
No 24
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=51.43 E-value=12 Score=34.48 Aligned_cols=73 Identities=22% Similarity=0.581 Sum_probs=45.5
Q ss_pred HHHHHHHHhhc-CeeecCCCCCC--CCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCcc
Q 009894 81 LLQLLFWFKQT-FRWVNAPPCDG--CSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 157 (523)
Q Consensus 81 l~~LL~WFK~~-F~wv~~P~C~~--Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~Gr 157 (523)
+++-+..+|.+ |-| |-|+. |+.+....+. ..|+|.+|+...-=|.
T Consensus 29 v~atI~~i~~d~~~Y---~aC~~~~CnKKv~~~~~---------------g~~~CekC~~~~~~~~-------------- 76 (181)
T 1l1o_C 29 SVATVVYLRKENCMY---QACPTQDCNKKVIDQQN---------------GLYRCEKCDTEFPNFK-------------- 76 (181)
T ss_dssp EEEEEEEECCSTTEE---EBCCSTTCCCBCEEETT---------------TEEEETTTTEEESSCC--------------
T ss_pred EEEEEEEEeCCCEEE---CCCCchhcCCccccCCC---------------CeEECCCCCCcCCCce--------------
Confidence 34444455554 433 67988 9987553321 1599999986532233
Q ss_pred chhhHHHHHHHHHHcCCCeEEEE-----eCCCeeEEEEEeCCCCCeEEecc
Q 009894 158 CGEWANCFTLYCRAFGYESRLIL-----DFTDHVWTECFSQSLGRWMHLDP 203 (523)
Q Consensus 158 Cge~A~lF~~l~RalGl~aR~V~-----d~~dHvW~EVy~~~~~rWI~vDP 203 (523)
.||++ |.+.+.|+-+|.+....=++...
T Consensus 77 ------------------~ry~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA 109 (181)
T 1l1o_C 77 ------------------YRMILSVNIADFQENQWVTCFQESAEAILGQNA 109 (181)
T ss_dssp ------------------EEEEEEEEEECSSCEEEEEEEHHHHHHHHSSCH
T ss_pred ------------------EEEEEEEEEEeCCCCEEEEEEhHHHHHHhCCCH
Confidence 36774 68899999999876444444443
No 25
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=49.61 E-value=5.7 Score=36.15 Aligned_cols=29 Identities=28% Similarity=0.616 Sum_probs=21.7
Q ss_pred cCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009894 96 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (523)
Q Consensus 96 ~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (523)
+-|+||.|+++-.+... ++|-|+.|+..-
T Consensus 26 ~lP~CP~C~seytYeDg---------------~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDG---------------ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECS---------------SSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecC---------------CeEECCcccccc
Confidence 46999999998665421 269999999854
No 26
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.20 E-value=37 Score=34.30 Aligned_cols=43 Identities=14% Similarity=0.362 Sum_probs=28.7
Q ss_pred eecCCCCCCCCCCccc--cCCCCCChhhhccCCceEEEeeeCCCCcccccCCCC
Q 009894 94 WVNAPPCDGCSNETVG--QGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYN 145 (523)
Q Consensus 94 wv~~P~C~~Cg~~t~~--~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn 145 (523)
| +..-|+.||+.-.. +..+ ++..+--...|..|++.-+|+|..
T Consensus 180 ~-~~~~CPvCGs~P~~s~l~~~--------g~~~G~R~l~Cs~C~t~W~~~R~~ 224 (309)
T 2fiy_A 180 E-SRTLCPACGSPPMAGMIRQG--------GKETGLRYLSCSLCACEWHYVRIK 224 (309)
T ss_dssp T-TCSSCTTTCCCEEEEEEEC------------CCEEEEEETTTCCEEECCTTS
T ss_pred c-cCCCCCCCCCcCceeEEeec--------CCCCCcEEEEeCCCCCEEeecCcC
Confidence 5 56789999996432 2110 112444478999999999999964
No 27
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.46 E-value=12 Score=37.87 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=25.9
Q ss_pred Cee-ecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009894 92 FRW-VNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (523)
Q Consensus 92 F~w-v~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (523)
..| +..-.|+.||+... ..+-....++..-+...+.++.|..|++..
T Consensus 216 t~W~~~R~~C~~Cg~~~~-l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 216 CEWHYVRIKCSHCEESKH-LAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp CEEECCTTSCSSSCCCSC-CEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CEEeecCcCCcCCCCCCC-eeEEEecCccccCCCcceEEEEcccccchH
Confidence 467 66778999998632 211111110000022557777999999764
No 28
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=44.17 E-value=16 Score=35.80 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCC
Q 009894 80 FLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYN 145 (523)
Q Consensus 80 ~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn 145 (523)
...+|++|.++. + -|+.||+++..... . ....|+.|+. +.|||..
T Consensus 96 ~a~~l~~w~~~~-~-----fC~~CG~~~~~~~~------------~--~~~~C~~C~~-~~yp~~~ 140 (269)
T 1vk6_A 96 RGVQLAEFYRSH-K-----YCGYCGHEMYPSKT------------E--WAMLCSHCRE-RYYPQIA 140 (269)
T ss_dssp HHHHHHHHHHTT-S-----BCTTTCCBEEECSS------------S--SCEEESSSSC-EECCCCE
T ss_pred HHHHHHhhhhcC-C-----ccccCCCcCccCCC------------c--eeeeCCCCCC-EecCCCC
Confidence 467888888653 2 29999998764311 0 1347999986 5678865
No 29
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=42.12 E-value=12 Score=28.37 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=20.5
Q ss_pred CCCCCCCCCcccc-CCCCCChhhhccCCceEEEeeeCCCCccc
Q 009894 98 PPCDGCSNETVGQ-GMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (523)
Q Consensus 98 P~C~~Cg~~t~~~-g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (523)
-+|+.||...... -...-.+|| ...=.|.|.+||..-
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsade-----p~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDE-----PSTIFYKCTKCGHTW 53 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSC-----SSEEEEEESSSCCEE
T ss_pred eECCCCCCCEEEEEEeecccCCC-----CCcEEEEcCCCCCEe
Confidence 4699999854321 111112222 122469999999853
No 30
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=40.93 E-value=9.2 Score=35.75 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=44.9
Q ss_pred HHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchh
Q 009894 81 LLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGE 160 (523)
Q Consensus 81 l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCge 160 (523)
+++-+...|.+..|+- |-|+.|..+....+. ..|+|.+|+.. .=|.
T Consensus 27 v~atI~~Ik~d~~~~Y-~ACp~CnKKV~~~~~---------------g~~~CekC~~~-~~~~----------------- 72 (172)
T 3u50_C 27 VYGNLVSIQMKNKLYY-YRCTCQGKSVLKYHG---------------DSFFCESCQQF-INPQ----------------- 72 (172)
T ss_dssp EEEEEECCCCSSCCEE-EECTTSCCCEEEETT---------------TEEEETTTTEE-CCCE-----------------
T ss_pred EEEEEEEEcCCCcEEe-hhchhhCCEeeeCCC---------------CeEECCCCCCC-CCce-----------------
Confidence 4444444555423333 669999887553321 26999999986 3232
Q ss_pred hHHHHHHHHHHcCCCeEEEE-----eCCCeeEEEEEeCCCCCeEEe
Q 009894 161 WANCFTLYCRAFGYESRLIL-----DFTDHVWTECFSQSLGRWMHL 201 (523)
Q Consensus 161 ~A~lF~~l~RalGl~aR~V~-----d~~dHvW~EVy~~~~~rWI~v 201 (523)
.||++ |.+++.|+-+|.+....-++.
T Consensus 73 ---------------~RYil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 73 ---------------VHLMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp ---------------EEECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred ---------------EEEEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 45663 689999999997654444444
No 31
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.11 E-value=50 Score=31.04 Aligned_cols=14 Identities=29% Similarity=0.909 Sum_probs=12.2
Q ss_pred eeecCCCCCCCCCC
Q 009894 93 RWVNAPPCDGCSNE 106 (523)
Q Consensus 93 ~wv~~P~C~~Cg~~ 106 (523)
.|++...|..|+.+
T Consensus 157 ~W~~~~~C~~C~~~ 170 (220)
T 1dvp_A 157 NWADGRVCHRCRVE 170 (220)
T ss_dssp CCCCCSBCTTTCCB
T ss_pred cCCCCCccCCCCCc
Confidence 79998899999875
No 32
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=36.53 E-value=8.3 Score=27.12 Aligned_cols=16 Identities=13% Similarity=0.891 Sum_probs=12.1
Q ss_pred ceEEEeeeCCCCcccc
Q 009894 125 ARVELFRCKVCSKITR 140 (523)
Q Consensus 125 ~rVE~y~C~~C~~~~R 140 (523)
.+.+.|+|+.||..+.
T Consensus 2 k~~~fY~C~~CGnive 17 (36)
T 1dxg_A 2 NEGDVYKCELCGQVVK 17 (36)
T ss_dssp CTTCEEECTTTCCEEE
T ss_pred CcccEEEcCCCCcEEE
Confidence 3467899999987653
No 33
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.49 E-value=86 Score=29.78 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=39.8
Q ss_pred hhhHHHHHhhhhhhchhcCCHHHHHHHhccCCh--------HHH--HHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHh
Q 009894 20 SGQFEETVHPYISKVLMYEDPIRQEAAKKTVPV--------ERL--EEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFK 89 (523)
Q Consensus 20 ~~~f~~~l~~~~~~v~~YEd~~lq~~Al~~IPl--------~~L--~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~WFK 89 (523)
.+.|++.|..... .--++..+++++++|-- ..| ...+-..|.+.|-..|...+. + ..|.
T Consensus 86 s~~fl~~l~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~-d-------amf~ 154 (226)
T 3zyq_A 86 NKQTMEELKDLLK---RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKES-D-------AMFA 154 (226)
T ss_dssp SHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHTCCCCCCCGG-G-------GCCC
T ss_pred cHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCCcccchhH-H-------Hhhh
Confidence 4677777766553 23466677777664421 000 111112344456544543322 1 1233
Q ss_pred hc-C-eeecCCCCCCCCCC
Q 009894 90 QT-F-RWVNAPPCDGCSNE 106 (523)
Q Consensus 90 ~~-F-~wv~~P~C~~Cg~~ 106 (523)
.+ - .|++...|..|+.+
T Consensus 155 ~~~~p~W~~~~~C~~C~~~ 173 (226)
T 3zyq_A 155 AERAPDWVDAEECHRCRVQ 173 (226)
T ss_dssp CCCCCCCCCCSBCTTTCCB
T ss_pred cccccccccCCCCcCcCCC
Confidence 33 2 89999999999875
No 34
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=33.93 E-value=22 Score=32.73 Aligned_cols=116 Identities=13% Similarity=0.245 Sum_probs=68.4
Q ss_pred eeEeeccchhhhccccCCC--------chhhHHHHHHHHHHHHhhc-cCCCcccccccccCCCCchhHHHHhh----ccc
Q 009894 348 TTIYNAFSSVLSHFVENNV--------PKSGAIELLKILKGILGDL-KKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 414 (523)
Q Consensus 348 ~~iY~a~~~~ls~~~~~~~--------~~~~a~~~~~~~r~~~~dl-k~~~f~~R~~~~~~~~~~~~~~~~~~----lps 414 (523)
++||++.++.|...+.... =.-....+.+.++....+- -+.=.-|=-++....+-+ .+.+.++ ||-
T Consensus 35 G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t-~eal~~~~~~~l~G 113 (178)
T 2pjk_A 35 EPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDIT-VETIRKLFDREIEG 113 (178)
T ss_dssp CCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCH-HHHHGGGCSEECHH
T ss_pred CeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcch-HHHHHHHhcccCcc
Confidence 4788887766555444331 1112233444454443220 111133333444444433 2344554 456
Q ss_pred hHHHHHhhcccc---cc---------C-CCCCeEEEecCCCccccchhh-HhHHHHHHHHHhcc
Q 009894 415 IGHLLRVLSLKS---EL---------N-TDGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 464 (523)
Q Consensus 415 ~~~ll~~lslk~---~~---------~-~~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 464 (523)
++.++..+++|. -- + -+|...++|=|||+.+-+++- ++++.|..++..++
T Consensus 114 ~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~~~~~ 177 (178)
T 2pjk_A 114 FSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp HHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hHHHhheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 688899999986 21 1 257799999999999999987 78888888877664
No 35
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=31.95 E-value=20 Score=35.69 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=19.5
Q ss_pred CCCCCCCCC-ccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009894 98 PPCDGCSNE-TVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (523)
Q Consensus 98 P~C~~Cg~~-t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (523)
--|+.||+. -...+...|-+| |.|..|+..
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaD-----------F~C~~C~Ee 65 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVAD-----------FYCNHCSEE 65 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCE-----------EECTTTCCE
T ss_pred CcCCCCCChhhhhccCCCcccc-----------cccCCcchh
Confidence 349999995 446666556555 999999864
No 36
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.26 E-value=15 Score=32.28 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=15.6
Q ss_pred EEEeeeCCCCcccccCCC
Q 009894 127 VELFRCKVCSKITRFPRY 144 (523)
Q Consensus 127 VE~y~C~~C~~~~RFPRY 144 (523)
.=+|.|..||...|||--
T Consensus 92 ~vv~tCl~Cg~~kR~p~~ 109 (120)
T 1x0t_A 92 HVVITCLECGYIMRYPYL 109 (120)
T ss_dssp EEEEEETTTCCEEEEECC
T ss_pred EEEEECCCCCCEEEEccC
Confidence 467999999999999953
No 37
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=29.85 E-value=57 Score=32.52 Aligned_cols=109 Identities=13% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCCCCCCCCcc---ccCCC-----CCChhhh-ccCCceEEEeeeCCCCcccccCCCCCHHHHHHhc----CccchhhH-
Q 009894 97 APPCDGCSNETV---GQGMG-----TPLPSEI-QYGAARVELFRCKVCSKITRFPRYNDPLKLVETK----RGRCGEWA- 162 (523)
Q Consensus 97 ~P~C~~Cg~~t~---~~g~~-----~P~~~E~-~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR----~GrCge~A- 162 (523)
...|+.||+... ..|.. -..+++. .......++++|..|+....-+.. ++..++... .+.-..|.
T Consensus 12 ~~~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~~~-~~~~~y~~~y~~~~~~~~~~~~ 90 (416)
T 4e2x_A 12 PTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEV-PRDLMFHEVYPYHSSGSSVMRE 90 (416)
T ss_dssp CEECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESSCC-CHHHHSSTTCCCCGGGCHHHHH
T ss_pred CCcCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecCcC-CHHHhccCCccCcCcCCHHHHH
Confidence 346999999821 11211 1112222 234457899999999976554433 556555421 12222222
Q ss_pred ---HHHHHHHHHcCCC-eEEEEeC--CCeeEEEEEeCCCCCeEEeccCCC
Q 009894 163 ---NCFTLYCRAFGYE-SRLILDF--TDHVWTECFSQSLGRWMHLDPCEG 206 (523)
Q Consensus 163 ---~lF~~l~RalGl~-aR~V~d~--~dHvW~EVy~~~~~rWI~vDP~~~ 206 (523)
...-.+++.+++. ..-|+|. .+=.|+........+.+++|+...
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~ 140 (416)
T 4e2x_A 91 HFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSG 140 (416)
T ss_dssp HHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHH
Confidence 2223344556653 3345541 111122222222236788998754
No 38
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=28.91 E-value=13 Score=34.74 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=49.2
Q ss_pred cccccCCCCchhHHHHhh----ccchHHHHHhhcccc-c---------cC-CCCCeEEEecCCCccccchhhHhHHHHHH
Q 009894 394 RVSLNSVPNNGQKIVHQL----LPSIGHLLRVLSLKS-E---------LN-TDGRVDIVLAGDPVKTSLSLPVVFKALDD 458 (523)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~----lps~~~ll~~lslk~-~---------~~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~ 458 (523)
=++....+-+ .+.+.++ +|-++.++..+++|. . .+ .+|...++|-|+|+..-.++-++++.|..
T Consensus 98 Gts~g~~D~t-~eal~~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~~~l~P~L~~ 176 (185)
T 3rfq_A 98 GTGVTPRDVT-PESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAH 176 (185)
T ss_dssp CCSSSTTCCH-HHHHHTTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccH-HHHHHHHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 3344444444 2344544 567788899888876 1 12 25678999999999999888888888888
Q ss_pred HHHhccc
Q 009894 459 MIHDLNN 465 (523)
Q Consensus 459 ~~~~~~~ 465 (523)
++..++.
T Consensus 177 ~~~~l~g 183 (185)
T 3rfq_A 177 IIGQLSS 183 (185)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 8776653
No 39
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.07 E-value=31 Score=28.98 Aligned_cols=27 Identities=19% Similarity=0.650 Sum_probs=18.0
Q ss_pred CCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009894 98 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (523)
Q Consensus 98 P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (523)
-.|+.||.....- ..|=+++|.+|+..
T Consensus 36 y~CpfCGk~~vkR--------------~a~GIW~C~kCg~~ 62 (83)
T 3j21_i 36 HTCPVCGRKAVKR--------------ISTGIWQCQKCGAT 62 (83)
T ss_dssp BCCSSSCSSCEEE--------------EETTEEEETTTCCE
T ss_pred cCCCCCCCceeEe--------------cCcCeEEcCCCCCE
Confidence 3599999864311 11337999999865
No 40
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.80 E-value=19 Score=27.19 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=17.0
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009894 99 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (523)
Q Consensus 99 ~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (523)
-||.||+....... -+.+.|..||-.
T Consensus 21 ~CP~CG~~~fm~~~--------------~~R~~C~kCG~t 46 (50)
T 3j20_Y 21 FCPRCGPGVFMADH--------------GDRWACGKCGYT 46 (50)
T ss_dssp ECSSSCSSCEEEEC--------------SSEEECSSSCCE
T ss_pred cCCCCCCceEEecC--------------CCeEECCCCCCE
Confidence 48999986443311 146899999853
No 41
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=27.37 E-value=13 Score=31.62 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCCCCCCCccccCCCCCChhhhccC---CceEEEeeeCCCCcccc
Q 009894 99 PCDGCSNETVGQGMGTPLPSEIQYG---AARVELFRCKVCSKITR 140 (523)
Q Consensus 99 ~C~~Cg~~t~~~g~~~P~~~E~~~g---a~rVE~y~C~~C~~~~R 140 (523)
.|+.||+.+...+.. +..-+..+. ...|..+.|..||...-
T Consensus 4 ~Cp~Cg~~~~~~~~~-~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIK-DIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEE-EEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceE-EEEEEECCEEEEECCCceeECCCCCCEee
Confidence 599999874322211 111111111 12356899999998653
No 42
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.47 E-value=36 Score=29.12 Aligned_cols=27 Identities=30% Similarity=0.685 Sum_probs=18.0
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009894 99 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (523)
Q Consensus 99 ~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (523)
.|+.||.....- ..|=+++|.+|+...
T Consensus 38 ~CpfCgk~~vkR--------------~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 38 FCEFCGKFAVKR--------------KAVGIWGCKDCGKVK 64 (92)
T ss_dssp CCTTTCSSCBEE--------------EETTEEECSSSCCEE
T ss_pred cCcccCCCeeEe--------------cCcceEEcCCCCCEE
Confidence 599999864311 113379999998643
No 43
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=26.29 E-value=17 Score=32.01 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=16.6
Q ss_pred eEEEeeeCCCCcccccCCCC
Q 009894 126 RVELFRCKVCSKITRFPRYN 145 (523)
Q Consensus 126 rVE~y~C~~C~~~~RFPRYn 145 (523)
..=+|+|..||...|||--.
T Consensus 86 ~~vv~tCl~Cg~~kR~p~~~ 105 (123)
T 2k3r_A 86 PHIVVKCLECGHIMRYPYIK 105 (123)
T ss_dssp CEEEEEETTTTEEEEEECCC
T ss_pred cEEEEECCCCCCEEEEecCc
Confidence 35679999999999999743
No 44
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.74 E-value=34 Score=27.98 Aligned_cols=27 Identities=26% Similarity=0.672 Sum_probs=17.6
Q ss_pred CCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009894 98 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (523)
Q Consensus 98 P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (523)
-.|+.||.....- ..|=+++|.+|+..
T Consensus 27 y~C~fCgk~~vkR--------------~a~GIW~C~~C~~~ 53 (72)
T 3jyw_9 27 YDCSFCGKKTVKR--------------GAAGIWTCSCCKKT 53 (72)
T ss_dssp BCCSSCCSSCBSB--------------CSSSCBCCSSSCCC
T ss_pred ccCCCCCCceeEe--------------cCCCeEECCCCCCE
Confidence 3599999864311 11337899999864
No 45
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=24.55 E-value=30 Score=31.15 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=26.3
Q ss_pred CCCeEEEecCCCccccchhh-HhHHHHHHHHHhcc
Q 009894 431 DGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 464 (523)
Q Consensus 431 ~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 464 (523)
+|...++|-|+|+..-..+- .+++.|..++..++
T Consensus 143 ~~~~i~~LPG~P~~~~~~~~~~v~P~L~h~~~~ir 177 (178)
T 3iwt_A 143 GKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp TTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67789999999998877775 56677777776654
No 46
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.95 E-value=39 Score=30.64 Aligned_cols=116 Identities=12% Similarity=0.177 Sum_probs=66.8
Q ss_pred eeEeeccchhhhccccCCC--------chhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhHHHHhh----ccch
Q 009894 348 TTIYNAFSSVLSHFVENNV--------PKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL----LPSI 415 (523)
Q Consensus 348 ~~iY~a~~~~ls~~~~~~~--------~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~----lps~ 415 (523)
++||++.++.|...+.... =... ..+.+.+++.+.+--+.=.-|==++....+-+ .+.+.++ +|-+
T Consensus 22 G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~t-~eal~~~~~~~lpG~ 99 (164)
T 3pzy_A 22 GEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDST-PDQTVAVVDYLIPGL 99 (164)
T ss_dssp ----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCH-HHHHHTTCSEECHHH
T ss_pred CceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCccH-HHHHHHHhcccCccH
Confidence 4788888866655443321 1122 44555555544211121123333344444434 2344554 5677
Q ss_pred HHHHHhhcccccc---------C-CCCCeEEEecCCCccccchhhHhHHHHHHHHHhccc
Q 009894 416 GHLLRVLSLKSEL---------N-TDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNN 465 (523)
Q Consensus 416 ~~ll~~lslk~~~---------~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~~~~~~~~ 465 (523)
+.++...++|..= + .+|+..++|=|||+..-.++-++++.|..++..++.
T Consensus 100 ~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~~~g 159 (164)
T 3pzy_A 100 AEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLGVLAGVLDHALDQLAG 159 (164)
T ss_dssp HHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887521 1 246799999999999888888888888888877754
No 47
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=23.65 E-value=41 Score=28.76 Aligned_cols=27 Identities=26% Similarity=0.672 Sum_probs=17.7
Q ss_pred CCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009894 98 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (523)
Q Consensus 98 P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (523)
-.|+.||.....- ..|=+++|.+|+..
T Consensus 37 y~CpfCgk~~vkR--------------~a~GIW~C~~C~~~ 63 (92)
T 3izc_m 37 YDCSFCGKKTVKR--------------GAAGIWTCSCCKKT 63 (92)
T ss_dssp CCCSSSCSSCCEE--------------EETTEEECTTTCCE
T ss_pred CcCCCCCCceeee--------------cccceEEcCCCCCE
Confidence 3599999854311 11337999999864
No 48
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=21.52 E-value=44 Score=33.56 Aligned_cols=33 Identities=27% Similarity=0.656 Sum_probs=19.7
Q ss_pred cCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCcc
Q 009894 96 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 138 (523)
Q Consensus 96 ~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~ 138 (523)
...||+.||......-.+ ..+|. .|-|+.|++.
T Consensus 250 gR~pC~~CGt~I~~~~~g---------~~gRs-TyfCp~~~~~ 282 (287)
T 3w0f_A 250 KRPNCDQCHSKITVCRFG---------ENSRM-TYFCPHCQKH 282 (287)
T ss_dssp TCSBCTTTCCBCEEECSS---------TTCCC-EEECTTTSCC
T ss_pred CCCCCCCCCCEEEEEEec---------CCCCC-EEECCCcccc
Confidence 455899999864422111 01222 4999999863
No 49
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.10 E-value=37 Score=29.61 Aligned_cols=27 Identities=37% Similarity=0.787 Sum_probs=17.4
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009894 99 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (523)
Q Consensus 99 ~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (523)
.|+.||.....- ..|=+++|.+|+...
T Consensus 38 ~CpfCgk~~vKR--------------~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 38 GCPFCGKVAVKR--------------AAVGIWKCKPCKKII 64 (103)
T ss_dssp ECTTTCCEEEEE--------------EETTEEEETTTTEEE
T ss_pred CCCCCCCceeee--------------cCcceEEcCCCCCEE
Confidence 399999854311 112379999998643
No 50
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.80 E-value=50 Score=29.49 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=9.7
Q ss_pred HHHHHHHhhcC
Q 009894 82 LQLLFWFKQTF 92 (523)
Q Consensus 82 ~~LL~WFK~~F 92 (523)
.|+|+|||.+|
T Consensus 99 lEFlQWfkkf~ 109 (127)
T 2qjx_A 99 LEFLQWLKKHW 109 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 49999999986
No 51
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.24 E-value=1.1e+02 Score=28.32 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhcCeeecCCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccccc
Q 009894 78 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 141 (523)
Q Consensus 78 ~~~l~~LL~WFK~~F~wv~~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RF 141 (523)
...|.++|+=|-..| | .|+.|+++.+..- ...-+++-.-+|..||+..-.
T Consensus 89 ~~~i~~~L~~yI~~Y--V---lC~~C~sPdT~L~---------~~~~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 89 ANKLQDMLDGFIKKF--V---LCPECENPETDLH---------VNPKKQTIGNSCKACGYRGML 138 (157)
T ss_dssp HHHHHHHHHHHHHHT--T---SCTTTCCSCCEEE---------EETTTTEEEEECSSSCCEEEC
T ss_pred HHHHHHHHHHHHHHe--E---ECCCCCCCccEEE---------EecCCCEEEEEccCCCCCCcc
Confidence 446888888776654 3 3999999644321 011367888999999986543
No 52
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.09 E-value=56 Score=25.05 Aligned_cols=29 Identities=14% Similarity=0.378 Sum_probs=19.4
Q ss_pred CCCCCCCCCCccccCCCCCChhhhccCCceEEEeeeCCCCccc
Q 009894 97 APPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 139 (523)
Q Consensus 97 ~P~C~~Cg~~t~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~ 139 (523)
..-||.||+...... .-+.|.|.+|+-..
T Consensus 18 ~~fCPkCG~~~~ma~--------------~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAE--------------HADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEE--------------CSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEec--------------cCCEEECCCCCCEE
Confidence 466999998553221 11378999998753
Done!