Query 009895
Match_columns 523
No_of_seqs 259 out of 1787
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00815 sulP high affinity s 100.0 4.6E-83 1E-87 690.1 55.0 503 1-508 60-563 (563)
2 COG0659 SUL1 Sulfate permease 100.0 6.7E-77 1.5E-81 631.1 50.6 481 1-515 67-550 (554)
3 PRK11660 putative transporter; 100.0 3.7E-75 8.1E-80 628.6 53.0 469 1-516 75-567 (568)
4 KOG0236 Sulfate/bicarbonate/ox 100.0 6.2E-76 1.3E-80 636.7 41.4 509 1-517 126-648 (665)
5 PF00916 Sulfate_transp: Sulfa 100.0 1.9E-48 4.2E-53 387.1 15.4 280 54-334 1-280 (280)
6 TIGR03173 pbuX xanthine permea 100.0 9.4E-28 2E-32 250.2 28.8 298 1-340 55-364 (406)
7 PRK10720 uracil transporter; P 100.0 2.6E-26 5.5E-31 239.3 28.4 327 2-370 61-414 (428)
8 TIGR00801 ncs2 uracil-xanthine 99.9 5.2E-26 1.1E-30 236.9 27.4 275 37-338 90-378 (415)
9 TIGR03616 RutG pyrimidine util 99.9 4.8E-22 1E-26 207.1 28.3 283 1-324 76-372 (429)
10 COG2233 UraA Xanthine/uracil p 99.9 9.3E-23 2E-27 207.7 20.5 292 2-328 77-376 (451)
11 PRK11412 putative uracil/xanth 99.9 7.4E-21 1.6E-25 196.9 28.1 300 1-329 64-372 (433)
12 COG2252 Xanthine/uracil/vitami 99.9 8.4E-20 1.8E-24 184.8 26.1 297 37-363 101-405 (436)
13 PF00860 Xan_ur_permease: Perm 99.8 1E-19 2.2E-24 188.7 23.4 270 34-329 86-364 (389)
14 PF01740 STAS: STAS domain; I 99.8 1.5E-18 3.2E-23 149.1 8.0 116 390-508 2-117 (117)
15 TIGR02886 spore_II_AA anti-sig 99.7 1.2E-17 2.5E-22 140.9 10.4 102 394-509 5-106 (106)
16 cd07041 STAS_RsbR_RsbS_like Su 99.7 2.4E-17 5.2E-22 139.7 10.5 102 394-509 7-109 (109)
17 TIGR00843 benE benzoate transp 99.7 2E-14 4.3E-19 145.6 27.5 295 4-358 79-392 (395)
18 cd06844 STAS Sulphate Transpor 99.6 6.9E-16 1.5E-20 128.6 9.9 92 394-496 5-96 (100)
19 TIGR00377 ant_ant_sig anti-ant 99.5 2.1E-14 4.6E-19 121.4 9.2 100 394-507 9-108 (108)
20 PF03594 BenE: Benzoate membra 99.5 6.2E-12 1.3E-16 125.3 26.9 273 37-359 87-377 (378)
21 cd07042 STAS_SulP_like_sulfate 99.5 4.7E-13 1E-17 112.6 12.5 101 393-503 5-105 (107)
22 COG1366 SpoIIAA Anti-anti-sigm 99.4 1.5E-12 3.3E-17 111.6 10.9 99 398-510 14-112 (117)
23 cd07043 STAS_anti-anti-sigma_f 99.4 3.6E-12 7.8E-17 105.6 10.6 90 395-496 6-95 (99)
24 PF13466 STAS_2: STAS domain 99.2 4.5E-11 9.9E-16 95.1 8.6 80 401-493 1-80 (80)
25 TIGR00834 ae anion exchange pr 99.2 2.4E-08 5.2E-13 110.7 30.5 302 1-316 420-790 (900)
26 KOG1292 Xanthine/uracil transp 99.2 2.2E-09 4.7E-14 109.0 19.3 288 1-322 69-396 (510)
27 COG3135 BenE Uncharacterized p 99.1 9.9E-09 2.1E-13 100.2 22.0 273 37-361 102-394 (402)
28 KOG1172 Na+-independent Cl/HCO 99.1 7.1E-08 1.5E-12 104.4 29.6 304 1-316 411-766 (876)
29 PF00955 HCO3_cotransp: HCO3- 98.2 2.8E-07 6.1E-12 97.1 0.3 309 1-317 84-472 (510)
30 COG3113 Predicted NTP binding 98.2 9.3E-06 2E-10 65.0 8.4 84 400-496 13-96 (99)
31 PF11840 DUF3360: Protein of u 97.0 0.037 8E-07 55.2 16.0 237 42-310 146-399 (492)
32 PF11964 SpoIIAA-like: SpoIIAA 95.2 0.011 2.4E-07 49.4 1.9 105 397-513 1-108 (109)
33 PRK10720 uracil transporter; P 94.0 0.45 9.8E-06 50.2 11.1 61 238-302 261-321 (428)
34 TIGR00815 sulP high affinity s 93.8 3.5 7.5E-05 45.3 18.0 111 200-316 14-142 (563)
35 PF14213 DUF4325: Domain of un 93.8 0.33 7.1E-06 37.6 7.2 66 412-489 2-70 (74)
36 COG0659 SUL1 Sulfate permease 92.0 2.1 4.6E-05 46.6 12.8 107 204-316 25-143 (554)
37 PF13344 Hydrolase_6: Haloacid 91.4 0.39 8.4E-06 39.7 5.0 72 442-515 1-77 (101)
38 COG2233 UraA Xanthine/uracil p 91.1 1.1 2.3E-05 47.1 8.9 60 237-302 280-341 (451)
39 KOG3040 Predicted sugar phosph 89.5 0.71 1.5E-05 42.8 5.3 78 437-516 5-87 (262)
40 PRK11412 putative uracil/xanth 87.6 4.3 9.2E-05 42.9 10.5 63 236-302 274-336 (433)
41 PF09345 DUF1987: Domain of un 87.0 1.8 4E-05 35.5 5.8 70 398-476 9-81 (99)
42 COG5439 Uncharacterized conser 85.9 1.5 3.2E-05 35.0 4.4 44 437-480 44-88 (112)
43 PRK11660 putative transporter; 84.3 24 0.00052 38.8 14.7 109 200-314 29-146 (568)
44 PF13788 DUF4180: Domain of un 80.2 29 0.00062 29.2 10.2 102 396-512 4-113 (113)
45 TIGR00640 acid_CoA_mut_C methy 73.6 48 0.001 28.7 10.3 94 395-514 28-125 (132)
46 PRK11778 putative inner membra 69.8 44 0.00095 33.9 10.4 70 395-476 89-159 (330)
47 PRK10444 UMP phosphatase; Prov 69.6 13 0.00029 36.0 6.6 74 440-515 2-80 (248)
48 cd02071 MM_CoA_mut_B12_BD meth 68.4 73 0.0016 27.0 11.3 92 396-513 26-121 (122)
49 TIGR03173 pbuX xanthine permea 68.0 36 0.00077 35.6 9.9 35 43-77 297-332 (406)
50 PF08496 Peptidase_S49_N: Pept 66.5 23 0.00049 31.7 6.8 45 394-448 96-140 (155)
51 TIGR01457 HAD-SF-IIA-hyp2 HAD- 65.7 14 0.0003 35.9 5.9 74 440-515 2-80 (249)
52 TIGR00801 ncs2 uracil-xanthine 64.9 39 0.00084 35.5 9.5 48 43-90 313-361 (415)
53 cd07023 S49_Sppa_N_C Signal pe 64.5 41 0.00089 31.5 8.7 66 398-475 2-70 (208)
54 TIGR03616 RutG pyrimidine util 63.4 54 0.0012 34.6 10.2 57 241-301 284-340 (429)
55 TIGR01458 HAD-SF-IIA-hyp3 HAD- 63.4 14 0.00031 35.9 5.6 74 440-515 2-84 (257)
56 COG0786 GltS Na+/glutamate sym 63.3 25 0.00054 36.2 7.1 48 39-86 5-56 (404)
57 TIGR00706 SppA_dom signal pept 62.8 44 0.00096 31.3 8.6 58 398-468 2-59 (207)
58 cd07019 S49_SppA_1 Signal pept 62.4 43 0.00094 31.5 8.5 68 398-477 2-76 (211)
59 TIGR01452 PGP_euk phosphoglyco 62.1 16 0.00035 36.0 5.7 74 439-514 2-80 (279)
60 KOG2882 p-Nitrophenyl phosphat 61.8 30 0.00065 34.2 7.2 78 438-516 21-103 (306)
61 COG4618 ArpD ABC-type protease 60.8 29 0.00062 37.0 7.3 77 436-514 488-564 (580)
62 PLN02645 phosphoglycolate phos 59.7 35 0.00075 34.3 7.7 75 438-514 27-106 (311)
63 PRK10949 protease 4; Provision 58.2 1.9E+02 0.004 32.2 13.5 44 435-478 109-152 (618)
64 TIGR00843 benE benzoate transp 58.0 2.1E+02 0.0047 29.8 13.1 106 203-309 23-143 (395)
65 cd07022 S49_Sppa_36K_type Sign 56.6 50 0.0011 31.1 7.8 47 412-469 26-72 (214)
66 PRK08699 DNA polymerase III su 55.6 1.1E+02 0.0025 30.9 10.6 106 394-515 70-184 (325)
67 TIGR01459 HAD-SF-IIA-hyp4 HAD- 54.9 38 0.00082 32.5 6.8 73 438-512 7-84 (242)
68 TIGR00210 gltS sodium--glutama 54.7 25 0.00055 36.7 5.8 40 44-83 8-51 (398)
69 COG0647 NagD Predicted sugar p 54.6 36 0.00077 33.5 6.5 79 438-517 7-90 (269)
70 PRK02261 methylaspartate mutas 54.4 1.4E+02 0.0031 25.9 9.7 94 396-515 30-133 (137)
71 cd02067 B12-binding B12 bindin 54.3 1.3E+02 0.0028 25.1 9.5 89 396-513 26-118 (119)
72 cd00394 Clp_protease_like Case 54.1 34 0.00074 30.4 6.0 57 400-468 1-57 (161)
73 TIGR01684 viral_ppase viral ph 53.2 42 0.00092 33.3 6.7 60 437-496 124-189 (301)
74 PRK09928 choline transport pro 52.5 1.4E+02 0.003 33.4 11.2 48 415-478 528-575 (679)
75 PF00860 Xan_ur_permease: Perm 52.3 1.8E+02 0.0039 30.2 11.8 82 235-316 39-136 (389)
76 PRK11475 DNA-binding transcrip 52.0 52 0.0011 30.9 7.0 73 438-512 37-112 (207)
77 PF03956 DUF340: Membrane prot 43.2 59 0.0013 30.2 5.8 57 297-353 23-80 (191)
78 PF03818 MadM: Malonate/sodium 43.0 81 0.0018 23.1 5.1 18 153-170 41-58 (60)
79 PF00072 Response_reg: Respons 41.9 1.7E+02 0.0038 23.2 8.1 56 437-497 42-99 (112)
80 PF03616 Glt_symporter: Sodium 41.3 54 0.0012 33.9 5.7 39 44-82 8-50 (368)
81 COG1121 ZnuC ABC-type Mn/Zn tr 40.8 93 0.002 30.3 6.9 51 437-488 156-207 (254)
82 cd07018 S49_SppA_67K_type Sign 39.6 1E+02 0.0022 29.2 7.0 54 411-475 29-82 (222)
83 COG1030 NfeD Membrane-bound se 38.6 81 0.0018 33.0 6.4 66 396-477 26-91 (436)
84 PRK10949 protease 4; Provision 38.5 1.8E+02 0.0039 32.4 9.5 71 394-476 324-401 (618)
85 PRK04596 minC septum formation 38.4 1.5E+02 0.0032 28.8 7.7 75 411-493 28-103 (248)
86 PF06946 Phage_holin_5: Phage 38.3 55 0.0012 26.4 4.0 23 145-167 32-54 (93)
87 COG1433 Uncharacterized conser 37.3 1.3E+02 0.0028 25.7 6.4 54 462-518 56-110 (121)
88 PRK03659 glutathione-regulated 37.3 3.6E+02 0.0079 29.8 11.8 62 437-513 422-483 (601)
89 PLN00124 succinyl-CoA ligase [ 37.0 1.8E+02 0.0038 30.7 8.8 87 411-513 328-417 (422)
90 PRK01973 septum formation inhi 36.5 1.7E+02 0.0037 28.7 8.0 74 411-493 26-99 (271)
91 TIGR00705 SppA_67K signal pept 34.8 1.4E+02 0.003 33.0 7.9 43 436-478 91-133 (584)
92 TIGR00834 ae anion exchange pr 34.5 95 0.0021 35.9 6.7 99 203-302 371-485 (900)
93 TIGR01501 MthylAspMutase methy 34.3 1.1E+02 0.0023 26.7 5.6 58 454-514 63-130 (134)
94 COG0053 MMT1 Predicted Co/Zn/C 33.9 4.9E+02 0.011 26.0 11.9 28 399-427 249-276 (304)
95 PRK05707 DNA polymerase III su 33.7 2.3E+02 0.0051 28.7 8.9 106 393-514 69-176 (328)
96 TIGR00705 SppA_67K signal pept 33.6 2.2E+02 0.0048 31.5 9.3 71 394-476 306-383 (584)
97 TIGR01460 HAD-SF-IIA Haloacid 33.5 81 0.0018 30.1 5.3 71 443-515 2-78 (236)
98 cd07021 Clp_protease_NfeD_like 33.4 1E+02 0.0023 28.1 5.8 47 398-456 1-47 (178)
99 TIGR00844 c_cpa1 na(+)/h(+) an 32.7 8.2E+02 0.018 28.2 16.5 43 118-166 11-53 (810)
100 PHA03398 viral phosphatase sup 32.6 1.3E+02 0.0028 30.1 6.5 60 437-496 126-191 (303)
101 cd03412 CbiK_N Anaerobic cobal 32.5 2.2E+02 0.0047 24.3 7.3 57 453-517 12-70 (127)
102 PF03594 BenE: Benzoate membra 31.4 6.1E+02 0.013 26.3 12.4 107 203-309 7-127 (378)
103 PF05437 AzlD: Branched-chain 29.9 2.6E+02 0.0055 22.5 7.0 64 292-359 32-96 (99)
104 PRK04516 minC septum formation 29.6 2.5E+02 0.0053 27.0 7.6 73 411-493 25-98 (235)
105 COG2179 Predicted hydrolase of 29.4 2.3E+02 0.005 25.7 6.9 77 437-513 26-107 (175)
106 TIGR00955 3a01204 The Eye Pigm 29.2 1.5E+02 0.0033 32.9 7.3 77 437-515 183-261 (617)
107 PTZ00445 p36-lilke protein; Pr 28.8 1.1E+02 0.0025 28.8 5.2 48 437-484 41-104 (219)
108 COG0565 LasT rRNA methylase [T 28.8 1.1E+02 0.0023 29.6 5.0 67 439-513 5-74 (242)
109 COG1346 LrgB Putative effector 28.4 1.9E+02 0.0042 27.5 6.6 96 127-225 12-115 (230)
110 TIGR01672 AphA HAD superfamily 28.4 2.9E+02 0.0064 26.5 8.2 77 403-495 42-160 (237)
111 PF05145 AmoA: Putative ammoni 28.3 2.7E+02 0.0058 28.1 8.2 45 249-294 85-129 (318)
112 PLN03211 ABC transporter G-25; 27.8 1.8E+02 0.0038 32.7 7.4 76 438-515 224-301 (659)
113 PF00916 Sulfate_transp: Sulfa 27.4 4E+02 0.0088 25.8 9.3 95 198-292 148-242 (280)
114 COG1963 Uncharacterized protei 26.8 3.3E+02 0.0071 24.0 7.1 20 252-271 46-65 (153)
115 PRK04125 murein hydrolase regu 26.4 62 0.0013 28.4 2.8 13 149-161 32-44 (141)
116 COG0616 SppA Periplasmic serin 26.3 3E+02 0.0066 27.7 8.2 63 397-471 60-129 (317)
117 PRK08769 DNA polymerase III su 26.1 3.1E+02 0.0068 27.7 8.2 72 437-515 112-184 (319)
118 cd07015 Clp_protease_NfeD Nodu 25.9 2E+02 0.0043 26.2 6.1 47 398-456 1-47 (172)
119 cd02072 Glm_B12_BD B12 binding 25.5 1.7E+02 0.0038 25.2 5.4 58 453-513 60-127 (128)
120 TIGR02717 AcCoA-syn-alpha acet 25.3 6.5E+02 0.014 26.7 10.9 91 403-513 343-441 (447)
121 PF01914 MarC: MarC family int 25.3 3.7E+02 0.0079 25.1 8.0 76 6-89 119-201 (203)
122 COG1137 YhbG ABC-type (unclass 25.0 3.4E+02 0.0075 25.7 7.4 52 437-491 156-207 (243)
123 cd03238 ABC_UvrA The excision 25.0 2.7E+02 0.006 25.2 7.0 45 439-484 108-152 (176)
124 PF10337 DUF2422: Protein of u 25.0 8.5E+02 0.018 25.8 12.4 76 277-361 136-212 (459)
125 TIGR01686 FkbH FkbH-like domai 24.6 1.5E+02 0.0033 29.7 5.7 59 438-496 2-78 (320)
126 PF12340 DUF3638: Protein of u 24.4 2.8E+02 0.006 26.6 7.0 81 397-494 71-151 (229)
127 PF07178 TraL: TraL protein; 24.4 2.2E+02 0.0048 23.0 5.6 43 328-370 19-62 (95)
128 TIGR01016 sucCoAbeta succinyl- 24.2 5.8E+02 0.013 26.3 10.2 71 436-513 308-382 (386)
129 PF04800 ETC_C1_NDUFA4: ETC co 24.0 52 0.0011 27.1 1.8 17 500-516 53-69 (101)
130 PF04156 IncA: IncA protein; 23.8 2.3E+02 0.0049 25.9 6.3 53 39-91 6-61 (191)
131 PF02579 Nitro_FeMo-Co: Dinitr 23.6 2.3E+02 0.0049 22.1 5.6 48 463-513 45-93 (94)
132 cd07014 S49_SppA Signal peptid 23.0 3.7E+02 0.008 24.2 7.5 54 411-475 22-75 (177)
133 COG3715 ManY Phosphotransferas 22.9 3E+02 0.0064 27.0 6.9 62 235-297 53-114 (265)
134 TIGR01662 HAD-SF-IIIA HAD-supe 22.8 1.7E+02 0.0037 24.7 5.0 35 459-493 29-73 (132)
135 COG2450 Uncharacterized conser 22.5 2.9E+02 0.0063 23.6 5.9 39 440-478 65-103 (124)
136 PRK00696 sucC succinyl-CoA syn 22.0 8.2E+02 0.018 25.2 10.7 86 411-513 293-382 (388)
137 PF12261 T_hemolysin: Thermost 21.9 2.3E+02 0.005 26.0 5.7 76 413-494 63-139 (179)
138 COG4555 NatA ABC-type Na+ tran 21.7 3.6E+02 0.0079 25.6 6.9 72 437-511 150-222 (245)
139 PF01102 Glycophorin_A: Glycop 21.6 1.5E+02 0.0032 25.4 4.1 23 345-368 71-93 (122)
140 COG4392 Predicted membrane pro 21.2 4.2E+02 0.0091 22.1 6.4 64 293-360 38-102 (107)
141 PRK03562 glutathione-regulated 21.2 9.6E+02 0.021 26.7 11.6 243 241-517 237-487 (621)
142 PF03904 DUF334: Domain of unk 21.1 6.5E+02 0.014 24.0 8.5 76 273-363 144-224 (230)
143 TIGR03082 Gneg_AbrB_dup membra 20.4 6E+02 0.013 22.4 12.4 77 201-292 73-149 (156)
144 PRK10408 putative L-valine exp 20.4 4.7E+02 0.01 21.8 6.5 62 8-81 46-107 (111)
145 cd06207 CyPoR_like NADPH cytoc 20.3 4.1E+02 0.0089 27.4 8.1 46 463-514 321-370 (382)
146 cd03269 ABC_putative_ATPase Th 20.3 4E+02 0.0086 24.5 7.4 47 437-484 145-191 (210)
147 TIGR01990 bPGM beta-phosphoglu 20.2 1.5E+02 0.0032 26.5 4.3 38 460-497 92-129 (185)
No 1
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=4.6e-83 Score=690.10 Aligned_cols=503 Identities=47% Similarity=0.749 Sum_probs=461.0
Q ss_pred CCCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAI 80 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~gigl 80 (523)
|||||++++||++++|+++++.+.++..+...++++++.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|+
T Consensus 60 fGss~~~i~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~ 139 (563)
T TIGR00815 60 FGTSRDIAIGPVAVMSLLLGSVIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAI 139 (563)
T ss_pred ecCCCcccCCHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHH
Confidence 79999999999999999999999997643333357889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCccccCCCcchHHHHHHHHhhcCcC-ccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHH
Q 009895 81 VIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHS-YWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVI 159 (523)
Q Consensus 81 ~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv 159 (523)
+++.+|++.++|.+..+...++++.+.+.+.++++. .||+.+++++++++++++..+++.+|++++.+.+.|.++++++
T Consensus 140 ~i~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi 219 (563)
T TIGR00815 140 TIGLSQLKGLLGISIFNTRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVI 219 (563)
T ss_pred HHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHH
Confidence 999999999999975434456777777777777650 1399999999999999988898888888877777779999999
Q ss_pred HHHHHHHHhhcCCCCeeEeeccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhH
Q 009895 160 LSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEM 239 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~ip~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el 239 (523)
++++++++++.+++++..+|++|.++|.+.+|.++| ..+...++.++.+++++++|++.+++++++++|+++|+|||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~g~ip~g~p~~~~~~~~~--~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El 297 (563)
T TIGR00815 220 LATLAVTIGLHKKQGVSILGHIPSGLSFFPPITLDW--ELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQEL 297 (563)
T ss_pred HHHHHHHHHccCCCCeEEEeecCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 999999998888889999999999998887776554 568889999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHhcccCCHH
Q 009895 240 VAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDIN 319 (523)
Q Consensus 240 ~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~~~l~~~~ 319 (523)
+++|++|+++|+|||+|++++++||++|.++|+|||++++++++++++++++++|+++|+|++++|+++++++++|++|+
T Consensus 298 ~a~G~~N~~~~~fg~~p~~~s~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~ 377 (563)
T TIGR00815 298 VAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYK 377 (563)
T ss_pred HHhhHHHHHHHHhCccCCCCcchHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCcCeEEeeecCCCCcccCCCCCCCccCCCcEE
Q 009895 320 EAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAAVTISFAKILLNAVRPGIELQGRLPRTDTYGDISQFPMAIKTPGIL 399 (523)
Q Consensus 320 ~~~~~~~~~~~d~~v~~~t~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 399 (523)
+++++||.++.|+.++++|+++++++|++.|+++|++++++.+++|++||+...+++.++++.|++.+++++.++.+++.
T Consensus 378 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 457 (563)
T TIGR00815 378 ELYKLWKADKMDFVVWLVTFFGVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGIL 457 (563)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999888899998888888889999
Q ss_pred EEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC
Q 009895 400 TIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP 479 (523)
Q Consensus 400 ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 479 (523)
++|++|+ |||+|+++|++++++.++++.++ +.++++.+++|+||++++++|+||+++|.++.++++++|++++++++
T Consensus 458 I~r~~g~-L~F~na~~~~~~l~~~~~~~~~~--~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~ 534 (563)
T TIGR00815 458 VYRVDGP-LYFANAEDLKDRLLKRIEDETRR--ELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANP 534 (563)
T ss_pred EEEcCCc-eEeCcHHHHHHHHHHHHhhhccc--cccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 9999999 99999999999998877642211 11223469999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCccccCCcccccCHHHH
Q 009895 480 RWQVIHKLKSAKLLDRIGKGCVYLSVAEA 508 (523)
Q Consensus 480 ~~~v~~~l~~~gl~~~~~~~~if~s~~~A 508 (523)
++++++.|+++|+.+.++++++|+|.|||
T Consensus 535 ~~~v~~~l~~~gl~~~~~~~~~f~s~~~A 563 (563)
T TIGR00815 535 NKAVRSTLKRGGLVELIGEEHFFPSVSDA 563 (563)
T ss_pred ChHHHHHHHHCCchhhcCCcceeCChhhC
Confidence 99999999999999999999999999986
No 2
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-77 Score=631.07 Aligned_cols=481 Identities=30% Similarity=0.458 Sum_probs=445.1
Q ss_pred CCCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAI 80 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~gigl 80 (523)
||+||++++||++++++++++.+.+.. +.+++.++.+++++|++|+++|++|+|++++|+|+||+.||++|+|+
T Consensus 67 fGgs~~~i~GPt~a~~~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai 140 (554)
T COG0659 67 FGGSRGLISGPTGAFAVVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAI 140 (554)
T ss_pred HcCCccceeccchhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHH
Confidence 799999999999999999999999643 45689999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHH
Q 009895 81 VIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVIL 160 (523)
Q Consensus 81 ~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~ 160 (523)
.|+.+|++.++|.+... +.+++.+..++++..+ +|+.+++++++++++++.++++.+++| ++++++++
T Consensus 141 ~I~~~Ql~~~~G~~~~~--~~~~~~~~~l~~~~~~--~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~ 208 (554)
T COG0659 141 LIILTQLPVLLGLASKV--SGFWAKVSALFTVLLT--INLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVL 208 (554)
T ss_pred HHHHHHHHHHcCCCccc--cchHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHH
Confidence 99999999999998533 3377888888998888 999999999999999999887776654 78999999
Q ss_pred HHHHHHHhhcCC--CCeeEeeccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchh
Q 009895 161 STLIVYLTKADK--HGVKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKE 238 (523)
Q Consensus 161 ~~~~~~~~~~~~--~~~~~~g~ip~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~e 238 (523)
+|.++|.++.+. .+ ++++++|+++|.+.+|+++| +.+.+.++.++.+++++++|++.++++++.++|+++|.|||
T Consensus 209 ~t~i~~~~~~~~~~~G-~i~~~lp~~~~~~~~P~~~~--~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrE 285 (554)
T COG0659 209 GTLIVWIFPLDSLRYG-EIPGSLPSGLPHFRLPNVSL--SLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRE 285 (554)
T ss_pred HHHHHHHhcCCchhcc-cCcccCCcCCCcccCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 999999998764 55 68889999999999998874 56889999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHhcccCCH
Q 009895 239 MVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDI 318 (523)
Q Consensus 239 l~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~~~l~~~ 318 (523)
|++||++|+++++|||+|+|++++||++|.++|||||+|++++++++++++++++|+++|||+++|++++++++++|+||
T Consensus 286 LiaqGiaNi~sglfgg~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~ 365 (554)
T COG0659 286 LIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDW 365 (554)
T ss_pred HHHhhHHHHHHHHhCCccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-hcCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCcCeEEeeecCCCCcccCCCCCCCccCCCc
Q 009895 319 NEAINIY-KVDKLDFLACIGAFLGVLFASVEIGLLAAVTISFAKILLNAVRPGIELQGRLPRTDTYGDISQFPMAIKTPG 397 (523)
Q Consensus 319 ~~~~~~~-~~~~~d~~v~~~t~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (523)
+.++.++ |.++.|+.++++|++++++.++..|+.+|+++|++.+++|.+|++....++.++.+. ++.++++..+..++
T Consensus 366 ~~~~~~~~~~~~~e~~v~~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 444 (554)
T COG0659 366 SLLKPLLRKLPRGELLVLLTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPG 444 (554)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCC
Confidence 9999954 589999999999999999999999999999999999999999999888777776554 45566777888999
Q ss_pred EEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEE
Q 009895 398 ILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMA 477 (523)
Q Consensus 398 i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~ 477 (523)
+.++|++|+ ++|+|++++++++.+..+ ++++.+++|+++++++|.|+.++|.++.++++++|+++.++
T Consensus 445 ~~v~ri~gp-lfF~~~~~~~~~i~~~~~-----------~~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~ 512 (554)
T COG0659 445 VLVYRLSGP-LFFGNADRLERALLGLIE-----------ERPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIV 512 (554)
T ss_pred eEEEEecCc-eEEeeHHHHHHHHHHHHh-----------ccCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEe
Confidence 999999999 999999999999988654 24789999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 478 SPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 478 ~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
+.+.+.++.+++.+..+..+++++|++.++|++.++..
T Consensus 513 ~~~~~~~~~l~~~~~~~~i~~~~~f~~~~~a~~~~~~~ 550 (554)
T COG0659 513 GLSAQVLRLLRRAGLLYLVGAEHIFDSVDSALEKARKL 550 (554)
T ss_pred ccchhhHHHHHHhccccccccccccchhHHHHHHHHHH
Confidence 99999999999999999998889999999999987743
No 3
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=3.7e-75 Score=628.58 Aligned_cols=469 Identities=21% Similarity=0.303 Sum_probs=418.2
Q ss_pred CCCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAI 80 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~gigl 80 (523)
||+||++++||++.+++++++...+++ ++.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|+
T Consensus 75 ~Gss~~~~~Gp~a~~~~~~~~~~~~~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al 145 (568)
T PRK11660 75 TGGSRFSVSGPTAAFVVILYPVSQQFG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGI 145 (568)
T ss_pred hcCCCCcccChhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHH
Confidence 799999999999999999988776643 34566789999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHH
Q 009895 81 VIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVIL 160 (523)
Q Consensus 81 ~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~ 160 (523)
+++.+|++.++|.+....++++++.+.++++++++ ++|.++++|+++++++++++++.+|. | ..++++++
T Consensus 146 ~I~~~Ql~~~lG~~~~~~~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~l~lll~~~~~~~~i------P--~~li~iiv 215 (568)
T PRK11660 146 VIATLQIKDFFGLQMAHVPEHYLEKVGALFQALPT--INWGDALIGIVTLGVLILWPRLKIRL------P--GHLPALLA 215 (568)
T ss_pred HHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHhhcccC------c--hHHHHHHH
Confidence 99999999999998544456788999999999999 99999999999999888876655443 3 77999999
Q ss_pred HHHHHHHhhcCCCCeeEeec--------------cCCCCCCCCCCC---------CCCchhhHHHHHHHHHHHHHHHHHH
Q 009895 161 STLIVYLTKADKHGVKIVKH--------------IKGGLNPSSAHQ---------LQLTGPHLGQTAKIGLISAVVALTE 217 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~--------------ip~~~p~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (523)
++++++.++....+++.+|+ +|+++|.+.+|. .++++..+.+.++.++.+++++++|
T Consensus 216 ~t~~~~~~~~~~~~v~~vg~~~~~~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~ie 295 (568)
T PRK11660 216 GTAVMGVLNLLGGHVATIGSRFHYVLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIE 295 (568)
T ss_pred HHHHHHHHhccCCCceeecccccccccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876666776664 677777666663 2346667888999999999999999
Q ss_pred HHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhhHhh
Q 009895 218 AIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLY 297 (523)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~ 297 (523)
++.+++.++++.++++|.|||++++|++|++||+|||+|++++++||++|.++|+|||++++++++++++.+++++|+++
T Consensus 296 sl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~ 375 (568)
T PRK11660 296 SLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLS 375 (568)
T ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhcccCCHHHHHhhhh-cCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCcCeEEeee
Q 009895 298 YTPIAILASIILSALPGLIDINEAINIYK-VDKLDFLACIGAFLGVLFASVEIGLLAAVTISFAKILLNAVRPGIELQGR 376 (523)
Q Consensus 298 ~iP~~vla~ili~~~~~l~~~~~~~~~~~-~~~~d~~v~~~t~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~~~~~~ 376 (523)
|||++++|+++++++++|++++.++++|| .++.|+.+|+.|+++++++|+..|+++|++++++.+++|++|++.
T Consensus 376 ~iP~~vLa~ili~~~~~m~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~----- 450 (568)
T PRK11660 376 YLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMTR----- 450 (568)
T ss_pred hCcHHHHHHHHHHHHHHhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc-----
Confidence 99999999999999999999888888776 688999999999999999999999999999999999999987531
Q ss_pred cCCCCcccCCCCCCCccCCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHH
Q 009895 377 LPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSG 456 (523)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssg 456 (523)
.+ +.++ .++.+++.++|++|+ |||+|++++++++++.. ++.+++|+||++++++|+||
T Consensus 451 ~~------~~~~---~~~~~~i~iv~~~g~-L~F~n~~~l~~~l~~~~------------~~~~~VVlD~~~V~~iDssg 508 (568)
T PRK11660 451 LA------PISV---QDVPDDVLVLRINGP-LFFAAAERLFTELESRT------------EGKRIVVLQWDAVPVLDAGG 508 (568)
T ss_pred cc------cccc---ccCCCcEEEEEeCCe-eeeeeHHHHHHHHHhhC------------CCCCEEEEEcCCCCcccHHH
Confidence 11 1111 345678999999999 99999999999987632 34689999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhcc
Q 009895 457 ILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSK 516 (523)
Q Consensus 457 l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~ 516 (523)
+++|.++.|++++ |++++++++++++++.|+++|+.+..++.++|+|.|||++++++++
T Consensus 509 ~~~L~~l~~~l~~-g~~l~l~~l~~~v~~~l~~~gl~~~~~~~~if~~~~~Al~~~~~~~ 567 (568)
T PRK11660 509 LDAFQRFVKRLPE-GCELRICNLQFQPLRTLARAGIQPIPGRLAFYPTLREALADLLRNE 567 (568)
T ss_pred HHHHHHHHHHHHC-CCEEEEecCChHHHHHHHHCCChhhcCcccccCCHHHHHHHHHhhc
Confidence 9999999999999 9999999999999999999999998878899999999999998664
No 4
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-76 Score=636.75 Aligned_cols=509 Identities=39% Similarity=0.623 Sum_probs=450.7
Q ss_pred CCCCCccccCchHHHHHHHHHHHhhhcCCCC---ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQNVQDPAA---DPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAG 77 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~g 77 (523)
||+|||+++||+|++|++++.++++..+... ++..++.++..+|+++|++|++||++|+|++++|+|+|++.||++|
T Consensus 126 fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~g 205 (665)
T KOG0236|consen 126 FGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFLTGIIQLILGLLRLGFLVRFLSEPALSGFTTG 205 (665)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhcChHHHHccHHHHhHhhhh
Confidence 8999999999999999999988876553322 5678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCccccCCCcchHHHH---HHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHh-hhcccccccccch
Q 009895 78 AAIVIGLQQLKGLLGISHFTNKTDVVSVL---GSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIG-RRNKKLFWLPAIA 153 (523)
Q Consensus 78 igl~i~~~ql~~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~-~~~~~~~~~p~~~ 153 (523)
+|+.++.+|+|.++|++......+....+ .+..++..+ . +.+++++++++++++..+.+. ++.++.+|+|.|.
T Consensus 206 aa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~ 282 (665)
T KOG0236|consen 206 AALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPK--T-LATLVLSLIFLVVLLLTKELNPKFKKKLFSVPIPF 282 (665)
T ss_pred hhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhcccc--c-chhhhhHHHHHHHHHHHHHhhhhhcccceeecccH
Confidence 99999999999999998444333322222 222333322 2 678999999999999988544 4445556689999
Q ss_pred hhHHHHHHHHHHHHhhcCCC-CeeEeeccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCc
Q 009895 154 PLLSVILSTLIVYLTKADKH-GVKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH 232 (523)
Q Consensus 154 ~li~vv~~~~~~~~~~~~~~-~~~~~g~ip~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (523)
++++++++|+++|.++.+.+ ....++++|+|+|+|.+|.+++.. ..+..++++++++++|+++.+|+++++++|+
T Consensus 283 ~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~----~~~~~~~~i~iva~~~~iai~k~fa~~~~y~ 358 (665)
T KOG0236|consen 283 ELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP----QVIPDAFAIAIVALLEHIAIGKSFASLHGYK 358 (665)
T ss_pred HHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 99999999999999988764 455666999999999999887643 5677788899999999999999999999999
Q ss_pred cCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHh
Q 009895 233 LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSAL 312 (523)
Q Consensus 233 ~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~ 312 (523)
+|.||||+|+|++|++||||+++|++++++||++|.++|+|||+++++.++++++.+++++|+++|+|+|+||++++.++
T Consensus 359 vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~ 438 (665)
T KOG0236|consen 359 VDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALLFLGPLFYYIPKCVLAAIIISAL 438 (665)
T ss_pred eCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cCCHHHHHhhhhcCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCcCeEEeeecCCCCcccCCCCCCC
Q 009895 313 PG-LIDINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAAVTISFAKILLNAVRPGIELQGRLPRTDTYGDISQFPM 391 (523)
Q Consensus 313 ~~-l~~~~~~~~~~~~~~~d~~v~~~t~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (523)
.+ +++.++++.+||.+|.|+++|+.|+..+++.+++.|+++|++++++..+.|.+||+...+++.++++.|++.+++++
T Consensus 439 ~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~ 518 (665)
T KOG0236|consen 439 IGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFFIILRSQRPRISLLGRIPRTNIYRDINQYRE 518 (665)
T ss_pred hHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHHHHHHhcCcchhhhcccCCCccccchhhcch
Confidence 99 67999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEECCCceeEechHHHHHHHH--HHHHhhh--hh-hhhhccCCceEEEEEecCCCccChHHHHHHHHHHHH
Q 009895 392 AIKTPGILTIRINSALFCFANANFIRERIM--RWVTEEQ--DE-LEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKK 466 (523)
Q Consensus 392 ~~~~~~i~ii~l~G~~L~f~n~~~~~~~l~--~~~~~~~--~~-~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~ 466 (523)
.++.++++|+|++++ ++|+|.+.+++++. +.+++.+ ++ ..+.+.++.+.+|+||++++++|++|+.+|.++.++
T Consensus 519 ~~~~~gi~i~r~~~~-l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vild~s~v~~iD~~g~~~L~~l~~~ 597 (665)
T KOG0236|consen 519 LKEIPGIKIFRISSP-LLFGNVESFEKKLERLKYLRKEEVLENSARELHENSIHSVILDCSGVSFIDTSGASALKSLFKD 597 (665)
T ss_pred hhccCceEEEEeccc-eeeccHHHHHHHHHHHHhhhhcccccCcccccccCcceEEEEECCccchhhHHHHHHHHHHHHH
Confidence 999999999999999 99999999999883 4444321 11 111122247899999999999999999999999999
Q ss_pred HHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhccc
Q 009895 467 LASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKF 517 (523)
Q Consensus 467 ~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~ 517 (523)
+++++++++++|+++++++.|++.++.+.++++++|+|++||++.++.++.
T Consensus 598 ~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~~~~ 648 (665)
T KOG0236|consen 598 LKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVSELS 648 (665)
T ss_pred HHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHHhhh
Confidence 999999999999999999999999998889999999999999999887655
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.9e-48 Score=387.13 Aligned_cols=280 Identities=38% Similarity=0.602 Sum_probs=251.5
Q ss_pred HHHhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHH
Q 009895 54 FGLFRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFL 133 (523)
Q Consensus 54 lg~~~lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l 133 (523)
+|++|+|++.+|+|+||+.||++|+|++++.+|++.++|.+.....++..+.+..+++..++. +++.++++++++++++
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTI-TNWPTLAIGLVALVFL 79 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhc-cchhhhhhhhHHHHHH
Confidence 588999999999999999999999999999999999999874333445555555556555541 3788999999999888
Q ss_pred HHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 009895 134 LIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVV 213 (523)
Q Consensus 134 ~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (523)
...+++.++++++.+.+.|.+++++++++++++.++.+.+++..++++|.++|.+.+|+.+++++.+...++.++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v 159 (280)
T PF00916_consen 80 LIIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIV 159 (280)
T ss_pred hhhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHH
Confidence 88888777676666667778999999999999999888888999999999999999995444556688889999999999
Q ss_pred HHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHh
Q 009895 214 ALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFT 293 (523)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~ 293 (523)
+++|++.++++++++++++.|.|||++++|++|+++|+|||+|+|++++||++|.++|+|||++++++++++++++++++
T Consensus 160 ~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~ 239 (280)
T PF00916_consen 160 GFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLA 239 (280)
T ss_pred HHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhHHHHHHHHHHhcccCCHHHHHhhhhcCchhHHH
Q 009895 294 SLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLA 334 (523)
Q Consensus 294 ~ll~~iP~~vla~ili~~~~~l~~~~~~~~~~~~~~~d~~v 334 (523)
|+++|+|++++|+++++++++|+|++.++++||.+|.|+++
T Consensus 240 ~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 240 PLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 99999999999999999999999999999999999999853
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=9.4e-28 Score=250.19 Aligned_cols=298 Identities=16% Similarity=0.140 Sum_probs=222.8
Q ss_pred CCCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAI 80 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~gigl 80 (523)
+|++.++..||+.+....+.....+ ..++.+.++.+++|++++++|. .++|+.|++|+.|++.++..+|+
T Consensus 55 ~G~~~P~~~g~s~a~~~~~~~~~~~---------~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl 124 (406)
T TIGR03173 55 FGIRLPVVQGVSFAAVGPMIAIGAG---------GGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGL 124 (406)
T ss_pred cCCccceeecCcHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHH
Confidence 5889999999987555544433322 2378899999999999999995 68999999999999999999999
Q ss_pred HHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHH
Q 009895 81 VIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVIL 160 (523)
Q Consensus 81 ~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~ 160 (523)
.+...++++..|... ..++ .++.++.+++++++++++++++.|++.| .++.++++++
T Consensus 125 ~l~~~~~~~~~g~~~---~~~~---------------~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivv 181 (406)
T TIGR03173 125 SLMPVAINWAAGGAG---APDF---------------GSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVV 181 (406)
T ss_pred HHHHHHHHHhccCCC---cccc---------------cchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHH
Confidence 999999887765321 0111 4456677888888777777666555432 2388999999
Q ss_pred HHHHHHHhhcCCCCeeEeeccCC-CCCC---CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccC--
Q 009895 161 STLIVYLTKADKHGVKIVKHIKG-GLNP---SSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLD-- 234 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~ip~-~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 234 (523)
++++++.++..+ ...+++.|. .+|. +.+|++++ . .+...+.++++++.|++.+.++.++..+++.|
T Consensus 182 g~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~P~f~~--~----~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~ 253 (406)
T TIGR03173 182 GTIVAAALGMVD--FSGVAEAPWFALPTPFHFGAPTFDL--V----AILTMIIVYLVSMVETTGDFLALGEITGRPITEK 253 (406)
T ss_pred HHHHHHHhcCCC--chhhccCCeeeCCCCCcCCCCeeCH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch
Confidence 999999987532 222232221 2232 23344332 2 23334568889999999999999888877654
Q ss_pred -CchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHH--HhhHhhhhhhHHHHHHHHHH
Q 009895 235 -GNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSA 311 (523)
Q Consensus 235 -~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~--~~~ll~~iP~~vla~ili~~ 311 (523)
.|||+.++|++|+++|+||++|.++...+++.+..+|++||+++++++++++++.++ ++++++++|++++|++++.
T Consensus 254 ~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~- 332 (406)
T TIGR03173 254 DLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV- 332 (406)
T ss_pred hccchHHhccHHHHHHHHhCCCCCcchhhhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-
Confidence 579999999999999999999988644445677889999999999999999888776 8999999999999998884
Q ss_pred hcccCCHHHHHhhhhcCch---hHHHHHHHHH
Q 009895 312 LPGLIDINEAINIYKVDKL---DFLACIGAFL 340 (523)
Q Consensus 312 ~~~l~~~~~~~~~~~~~~~---d~~v~~~t~~ 340 (523)
.+.++....++.+++.+.. +..+.-+.+.
T Consensus 333 ~~~~i~~~g~~~l~~~~~~~~rn~~i~g~~~~ 364 (406)
T TIGR03173 333 MFGMVAASGIRILSKVDFDRRRNLLIVAVSLG 364 (406)
T ss_pred HHHHHHHHHHHHHHhCcccCcceehhhHHHHH
Confidence 8889888888888765543 4445444433
No 7
>PRK10720 uracil transporter; Provisional
Probab=99.95 E-value=2.6e-26 Score=239.27 Aligned_cols=327 Identities=13% Similarity=0.093 Sum_probs=234.1
Q ss_pred CCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHh--hh--hhHHhhhhHhHHHHHHHH
Q 009895 2 GSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLF--RL--GFLVDFLSHAAIVGFMAG 77 (523)
Q Consensus 2 Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~--~l--g~l~~~ip~~Vi~Gf~~g 77 (523)
|++-+...||+.+.-..+.... . .-++.+.++.+++|+++++++++ |+ +++.|++|+.|++.+++.
T Consensus 61 g~rlP~~~G~sfa~i~~~~~~~-~---------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~l 130 (428)
T PRK10720 61 KGKIPAYLGSSFAFISPVLLLL-P---------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAV 130 (428)
T ss_pred cCccceEEeCcHHHHHHHHHHH-H---------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHH
Confidence 3466777787544421111111 1 12678899999999999999997 33 478899999999999999
Q ss_pred HHHHHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHH
Q 009895 78 AAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLS 157 (523)
Q Consensus 78 igl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~ 157 (523)
+|+.+....+++. |... +.+++ .++.++.+++++++++++..++.|++.|. .+.+++
T Consensus 131 IGl~L~~~~~~~~-g~~~--~~~~~---------------~~~~~~~lalv~l~iil~~~~~~kg~~~~-----~~iLig 187 (428)
T PRK10720 131 IGLELAGVAAGMA-GLLP--AEGQT---------------PDSKTIIISMVTLAVTVLGSVLFRGFLAI-----IPILIG 187 (428)
T ss_pred HHHHhHHHHHhhc-cccC--CCCcc---------------cchHHHHHHHHHHHHHHHHHHHhccHHHH-----hHHHHH
Confidence 9999997777532 3211 11111 45667888888888777665556655432 267999
Q ss_pred HHHHHHHHHHhhcCCCCeeEeec-cCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC----c
Q 009895 158 VILSTLIVYLTKADKHGVKIVKH-IKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----H 232 (523)
Q Consensus 158 vv~~~~~~~~~~~~~~~~~~~g~-ip~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 232 (523)
+++++++++.++.. ++..+++ .+.++|.+..|++ ++..+..+++ .+++.+.|++.+..+.++..++ +
T Consensus 188 IvvG~ila~~lG~~--d~~~v~~a~~~~lP~~~~P~f--d~~~il~l~~----~~lv~~~EsiG~~~a~~~~~~~~~~~~ 259 (428)
T PRK10720 188 VLVGYALSFAMGMV--DTTPIIEAHWFALPTFYTPRF--EWFAILTILP----AALVVIAEHVGHLVVTANIVKKDLLRD 259 (428)
T ss_pred HHHHHHHHHHhcCC--CHHHhhcCccccCCCCCCCcC--cHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999998753 2333332 2345666655654 4333444444 4445567787777776655543 4
Q ss_pred cCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHH--HhhHhhhhhhHHHHHHHHH
Q 009895 233 LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILS 310 (523)
Q Consensus 233 ~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~--~~~ll~~iP~~vla~ili~ 310 (523)
.|.|||+.++|++|+++|+||++|.+++..+..+...+|.++|++..+++++++++.++ ++++++.||.||+||+.+
T Consensus 260 ~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i- 338 (428)
T PRK10720 260 PGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL- 338 (428)
T ss_pred ccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-
Confidence 57899999999999999999999999877777788889999999999999988888865 899999999999999999
Q ss_pred HhcccCCHHHHHhhhh--cCch---hHHHHHH-----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCcC
Q 009895 311 ALPGLIDINEAINIYK--VDKL---DFLACIG-----------AFLGVLFASVEIGLLAAVTISFAKILLNAVRPG 370 (523)
Q Consensus 311 ~~~~l~~~~~~~~~~~--~~~~---d~~v~~~-----------t~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~ 370 (523)
+.+.+++..++|.+++ .+.. +..+..+ ++...+..|+..|.++|+++++++..+|.-|++
T Consensus 339 ~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 339 LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 6899999999999954 3321 2232221 222233458888999999999998887766654
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.95 E-value=5.2e-26 Score=236.94 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hh--hhHHhhhhHhHHHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhh
Q 009895 37 RKLVFTVTFFAGVFQSVFGLF--RL--GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSS 112 (523)
Q Consensus 37 ~~~~~~~~~l~G~~~~~lg~~--~l--g~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~ 112 (523)
++.+.+..+++|+++++++.+ |+ +++.|++|+.|.++++.++|+.++..+++++.|.....+..++
T Consensus 90 ~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~~---------- 159 (415)
T TIGR00801 90 IPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSATY---------- 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCccccccc----------
Confidence 578889999999999999985 43 4668999999999999999999999999998775421111111
Q ss_pred cCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccC-CCCCCCCCC
Q 009895 113 LHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNPSSAH 191 (523)
Q Consensus 113 ~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip-~~~p~~~~~ 191 (523)
.++.++.+++++++++++++++.|++.| .++.++++++++++++.+|..+ ...+.+.| .++|.+..|
T Consensus 160 -----~~~~~~~vg~~~l~~~vl~~~~~~g~~~-----~~aiLigiv~g~i~a~~lg~~~--~~~v~~~~~~~lP~~~~~ 227 (415)
T TIGR00801 160 -----GSLENLGVAFVVLALIILLNRFGKGFLK-----SISILIGILVGYILALFMGIVD--FSPVIDAPWFSLPTPFTF 227 (415)
T ss_pred -----CchhhHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHcCCcc--chhhccCcccccCCccCC
Confidence 3456788899998888777776665432 2389999999999999987532 21122333 244544433
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCcc----CCchhHHHHhHHHHHhhhcCCccCCCccchhhhh
Q 009895 192 QLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHL----DGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVN 267 (523)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~ 267 (523)
..+|++. .+...+.++++++.|++.+.++.+++.|++. +.|||+.++|++|+++|+||++|.+++..+++++
T Consensus 228 g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~ 303 (415)
T TIGR00801 228 GPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGVI 303 (415)
T ss_pred CceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhheee
Confidence 3334433 4444567888999999999999998888755 3589999999999999999999999999999999
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHH--HhhHhhhhhhHHHHHHHHHHhcccCCHHHHHhhhhcCc---hhHHHHHHH
Q 009895 268 FSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDK---LDFLACIGA 338 (523)
Q Consensus 268 ~~~Ga~t~~s~i~~~~~~l~~~~~--~~~ll~~iP~~vla~ili~~~~~l~~~~~~~~~~~~~~---~d~~v~~~t 338 (523)
..+|.+||++..+++++++++.++ ++++++++|.+++||+++ +.+.++...+++.+++.+. ++..+..+.
T Consensus 304 ~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~~~r~~~i~~~s 378 (415)
T TIGR00801 304 ALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLDNRRNRNIIAAS 378 (415)
T ss_pred eecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccCcccceehHHHH
Confidence 999999999999999999999999 999999999999999999 5888988888888876543 344444443
No 9
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.91 E-value=4.8e-22 Score=207.13 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=203.5
Q ss_pred CCCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhh----hhHHhhhhHhHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRL----GFLVDFLSHAAIVGFMA 76 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~l----g~l~~~ip~~Vi~Gf~~ 76 (523)
+|++-+...|+++.....+...... . ..+++.+++.+.++++++|++++++|++++ +++.|++|+.|.+-.+.
T Consensus 76 ~G~rlP~v~G~sf~f~~~~~~~~~~-~--~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~ 152 (429)
T TIGR03616 76 TGGRVPSYLGSSAAFVGAVIAATGY-N--GQGTNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVM 152 (429)
T ss_pred hCCCceeEEcCcHHHHHHHHHHHhh-c--ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHH
Confidence 4788888999987766655443221 1 112334678889999999999999998865 67889999999999999
Q ss_pred HHHHHHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhH
Q 009895 77 GAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLL 156 (523)
Q Consensus 77 gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li 156 (523)
.+|+.++...++...+ +++ .+|. ++++++.+++..++.|++.|.. +.++
T Consensus 153 lIGlsL~~vg~~~~~~-------~~~---------------~~~~----al~tl~~i~l~~l~~~~~l~~~-----avLi 201 (429)
T TIGR03616 153 AIGLNLAPIAVKSVSA-------SGF---------------DSWM----AVLTILCIGAVAVFTRGMLQRL-----LILV 201 (429)
T ss_pred HHHHHHHHHHHHhccc-------ccc---------------ccHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 9999999877765322 111 1222 2333333333334444443322 7899
Q ss_pred HHHHHHHHHHHh----hcC-CCCeeEe-eccCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC
Q 009895 157 SVILSTLIVYLT----KAD-KHGVKIV-KHIKGGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKG 230 (523)
Q Consensus 157 ~vv~~~~~~~~~----~~~-~~~~~~~-g~ip~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (523)
++++|+++++.+ +.. ..++..+ +.-+.++|++..|.+++ .. +...+..+++.+.|++....+.++..+
T Consensus 202 GivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~lP~~~~p~f~~--~~----il~~~~~~lv~~~esiG~~~a~~~~~~ 275 (429)
T TIGR03616 202 GLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGLPNFHTPVFNA--NA----MLLIAPVALILVAENLGHFKAVAGMTG 275 (429)
T ss_pred HHHHHHHHHHHHhhhcCCCccccCcccccCccccCCcCCCceEcH--HH----HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 999999998875 221 1233333 22333566666564433 22 233445677888999999999888887
Q ss_pred CccCC--chhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHH--HhhHhhhhhhHHHHH
Q 009895 231 YHLDG--NKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILAS 306 (523)
Q Consensus 231 ~~~~~--n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~--~~~ll~~iP~~vla~ 306 (523)
++.|. ||+++++|++|+++|+||+.|.+.+..+..+...+|.+||+....++++++++.++ ++.+++.||.||+||
T Consensus 276 ~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG 355 (429)
T TIGR03616 276 RNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGG 355 (429)
T ss_pred CCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 76665 89999999999999999999999887777778889999999999998887777655 566999999999999
Q ss_pred HHHHHhcccCCHHHHHhh
Q 009895 307 IILSALPGLIDINEAINI 324 (523)
Q Consensus 307 ili~~~~~l~~~~~~~~~ 324 (523)
+++ +.+.++...++|.+
T Consensus 356 ~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 356 ASI-VVFGLIAVAGARIW 372 (429)
T ss_pred HHH-HHHHHHHHHHHHHH
Confidence 998 68999988888854
No 10
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.90 E-value=9.3e-23 Score=207.72 Aligned_cols=292 Identities=14% Similarity=0.090 Sum_probs=221.1
Q ss_pred CCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hHHhhhhHhHHHHHHHHHHH
Q 009895 2 GSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLG-FLVDFLSHAAIVGFMAGAAI 80 (523)
Q Consensus 2 Gss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg-~l~~~ip~~Vi~Gf~~gigl 80 (523)
|+.-+...|.+.+...-+.....+++ +-++.+....+.+|++.++++.+ +. |+.|++|+.|.+-++.-||+
T Consensus 77 g~~lP~~lG~sFafi~p~i~~~~~~g-------~~~~~~~G~ii~ag~~~~li~~~-~~~~l~rlfPPvVtG~Vi~~IGl 148 (451)
T COG2233 77 GSGLPSYLGSSFAFVAPMIAIGGTTG-------DGIAALLGGIIAAGLVYFLISPI-VKIRLARLFPPVVTGPVVLVIGL 148 (451)
T ss_pred ccCCCeeEechHHHHHHHHHHHhccC-------CchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCceEEeEeeeehh
Confidence 55566666765554444444444322 12567888999999999999987 45 99999999999999999999
Q ss_pred HHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHH
Q 009895 81 VIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVIL 160 (523)
Q Consensus 81 ~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~ 160 (523)
.++...++++.|.+...++.++ .+..++.+++.++++.++..++.|.+-|.. +.++++++
T Consensus 149 sL~~vai~~~~G~~~~~~~~~~---------------~~~~~l~la~~tl~~il~~~~f~~g~~~~i-----~ILiGlv~ 208 (451)
T COG2233 149 SLAPVAINMAGGGPGAAGNPDF---------------GSLENLGLALVTLLIILLINRFGKGFLRRI-----PILIGLVV 208 (451)
T ss_pred hhHHHHHHHhhCCCCCCCCccc---------------CchhHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHH
Confidence 9999999999987632222233 566778899999988888888887765432 78999999
Q ss_pred HHHHHHHhhcCCCCeeEeeccC-CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCc----cCC
Q 009895 161 STLIVYLTKADKHGVKIVKHIK-GGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDG 235 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~ip-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 235 (523)
|+++++++|.- +.+.+.+-| -.+|.|..+...|++..+.. .+.++++.+.|++....+.++.+|++ .+.
T Consensus 209 G~~la~~~G~v--df~~v~~a~w~~~P~~~~fg~~F~~~ail~----m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l 282 (451)
T COG2233 209 GYLLALFMGMV--DFSGVAEAPWFALPTPFYFGMAFDWGAILT----MLPVAIVTIVEHTGDITATGEITGRDLDGKPRL 282 (451)
T ss_pred HHHHHHHhCCc--CccccccCceeeCCcccCCCeeecHHHHHH----HHHHHHHHHHHHhhhhhhHHhHhCCcCccCccc
Confidence 99999999842 222233322 23454444433455443433 44566677777777777776666654 556
Q ss_pred chhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHH--HhhHhhhhhhHHHHHHHHHHhc
Q 009895 236 NKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALP 313 (523)
Q Consensus 236 n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~--~~~ll~~iP~~vla~ili~~~~ 313 (523)
+|.++++|++++++++||++|.+....+..+...+|.+||+....++++++++.++ ++.+++.||.||+||+.++ .+
T Consensus 283 ~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~iv-mF 361 (451)
T COG2233 283 RRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLV-LF 361 (451)
T ss_pred ccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHH-HH
Confidence 78999999999999999999999888888888889999999999999999888877 7899999999999999885 88
Q ss_pred ccCCHHHHHhhhhcC
Q 009895 314 GLIDINEAINIYKVD 328 (523)
Q Consensus 314 ~l~~~~~~~~~~~~~ 328 (523)
+++....+|.+-|.+
T Consensus 362 G~Ia~sGir~l~~~~ 376 (451)
T COG2233 362 GMIAASGIRILIRNK 376 (451)
T ss_pred HHHHHHHHHHHHhcc
Confidence 898888887776543
No 11
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.89 E-value=7.4e-21 Score=196.87 Aligned_cols=300 Identities=13% Similarity=0.089 Sum_probs=212.8
Q ss_pred CCCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhHHhhhhHhHHHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAA 79 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~-lg~l~~~ip~~Vi~Gf~~gig 79 (523)
||++.+++.||+.+.-..+.++.......+...++.........+++|++++++|..+ ++|+.|++|+-|.+-++.-+|
T Consensus 64 ~G~rlPiv~G~Sf~~~~~~~~i~~~~~~~g~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIG 143 (433)
T PRK11412 64 CGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLG 143 (433)
T ss_pred cCCCCeeeeCCchHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHH
Confidence 6899999999987764323222211000000011223334456899999999999998 699999999999999999999
Q ss_pred HHHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHH
Q 009895 80 IVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVI 159 (523)
Q Consensus 80 l~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv 159 (523)
+.++...++++.|.+.. ...++ .+ ++...+.+++.++.+++...++.|++.|.. +.+++++
T Consensus 144 lsL~~~a~~~~~G~~~~-~~~~~-----------~~--~~~~~~~~a~~~l~~il~~~~~~~g~~~~~-----svLiGiv 204 (433)
T PRK11412 144 AQLTTIFFKGMLGLPFG-IADPN-----------GK--IQLPPFGLSVAVMCLVLAMIIFLPQRIARY-----SLLVGTI 204 (433)
T ss_pred HhhHHHHHHHhcCCCcc-Ccccc-----------cc--cchHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHH
Confidence 99999999998875210 01111 01 334556777777777777777777665433 7899999
Q ss_pred HHHHHHH-HhhcCCCCeeEeeccC-CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC----cc
Q 009895 160 LSTLIVY-LTKADKHGVKIVKHIK-GGLNPSSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----HL 233 (523)
Q Consensus 160 ~~~~~~~-~~~~~~~~~~~~g~ip-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 233 (523)
+|++++. .++.+ ...+++.+ ..+| +..|. +|++.. +...+..+++...|++....+.++..++ +.
T Consensus 205 ~G~v~a~~~~g~d---~~~v~~a~w~~~p-fG~P~-~F~~~~----il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~ 275 (433)
T PRK11412 205 VGWILWAFCFPSS---HSLSGELHWQWFP-LGSGG-ALEPGI----ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNT 275 (433)
T ss_pred HHHHHHHHHhCCC---cchhccCCceeec-CCCCC-ccCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999754 55542 22223322 2222 23342 234332 3344556667777777777777666555 44
Q ss_pred CCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHH--HhhHhhhhhhHHHHHHHHHH
Q 009895 234 DGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSA 311 (523)
Q Consensus 234 ~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~--~~~ll~~iP~~vla~ili~~ 311 (523)
+.+|.++++|++|+++|+||++|.+....+..+...+|.+||+...++|++++++.++ ++.+++.||.||+||+.++
T Consensus 276 ~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~- 354 (433)
T PRK11412 276 RYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV- 354 (433)
T ss_pred ccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-
Confidence 6789999999999999999999998777777888889999999999999999999887 7889999999999999886
Q ss_pred hcccCCHHHHHhhhhcCc
Q 009895 312 LPGLIDINEAINIYKVDK 329 (523)
Q Consensus 312 ~~~l~~~~~~~~~~~~~~ 329 (523)
.+.++--.+++.+.|.+.
T Consensus 355 ~Fg~I~~~Gi~~l~~~~~ 372 (433)
T PRK11412 355 SYLPLLGSALVFSQQITF 372 (433)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 777777777777766553
No 12
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.86 E-value=8.4e-20 Score=184.81 Aligned_cols=297 Identities=20% Similarity=0.280 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hHHhhhhHhHHHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhhcCc
Q 009895 37 RKLVFTVTFFAGVFQSVFGLFRLG-FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 115 (523)
Q Consensus 37 ~~~~~~~~~l~G~~~~~lg~~~lg-~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 115 (523)
|+.++++.|++|++++++++.++. +++|.+|+++..+..+|+|++|..-.+++ .|.-. .++.. .-.+.+
T Consensus 101 wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~~-~Givv-~~~~t--------lv~LG~ 170 (436)
T COG2252 101 WQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLKN-AGIVV-ANPAT--------LVALGD 170 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhh-CCeEE-ecCcc--------eEEeec
Confidence 899999999999999999999985 56899999999999999999999999883 45421 11111 111222
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccCCCCCCCCCCCCCC
Q 009895 116 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQLQL 195 (523)
Q Consensus 116 ~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip~~~p~~~~~~~~~ 195 (523)
.+.+.++++++.+++...+. .+|.+. +.+++++..+++++.+|.....-...+..|+-.|. +.+.++
T Consensus 171 --~~~p~vll~i~G~~l~~~L~--~~~i~G-------aili~i~~~t~~g~~~g~~~~~~~~~~~~p~~~~~--~~~~d~ 237 (436)
T COG2252 171 --FTSPGVLLAILGLLLIIVLV--SRKIKG-------AILIGILVTTILGIILGIDVHFGGLVGAPPSLSPI--FGQLDL 237 (436)
T ss_pred --CCCchHHHHHHHHHHHHHHH--HhhccH-------hhhHHHHHHHHHHHHhcccccccccccCCCCccch--hhHhhh
Confidence 33345555555554444332 244443 67899999999999988543222223333433322 223333
Q ss_pred ch-hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC------CccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhh
Q 009895 196 TG-PHLGQTAKIGLISAVVALTEAIAVGRSFASIKG------YHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNF 268 (523)
Q Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~ 268 (523)
.. ......++..+...++.+.|++.+..+.+++.| +..|.+|.+.+++++.++|+++|..|.+ ++..|+...
T Consensus 238 ~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t~~ga~~GtS~~t-~yIESaaGv 316 (436)
T COG2252 238 SGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVATVVGALFGTSTVT-AYIESAAGV 316 (436)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHHHHHHhcCCcchh-hhhhccccc
Confidence 32 334556667788888999999988888776643 2357899999999999999999999977 999999999
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHhcccCCHHHHHhhhhcCchhHHHHHHHHHHHHHHhhh
Q 009895 269 SAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFASVE 348 (523)
Q Consensus 269 ~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~~~l~~~~~~~~~~~~~~~d~~v~~~t~~~~~~~~~~ 348 (523)
..|+||.++.++.++++++. +|++|+...+|..+.++.|+++|..|+ ..+.+.++.|+......|++.++..+.
T Consensus 317 a~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~-----~~v~~id~~d~~ea~PaF~tiv~mplT 390 (436)
T COG2252 317 AAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALML-----SSVKQIDWSDFTEAVPAFLTIVMMPLT 390 (436)
T ss_pred ccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHH-----hhhccCCchhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999988 699999999999999999999999888 556678888888777777777777666
Q ss_pred HHHHHHHHHHHHHHH
Q 009895 349 IGLLAAVTISFAKIL 363 (523)
Q Consensus 349 ~gi~~Gi~~s~~~~~ 363 (523)
..+.-|+.++++.|.
T Consensus 391 ySIa~Gia~Gfi~y~ 405 (436)
T COG2252 391 YSIADGIAFGFISYV 405 (436)
T ss_pred HHHHhhHHHHHHHHH
Confidence 666666666665544
No 13
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.85 E-value=1e-19 Score=188.67 Aligned_cols=270 Identities=18% Similarity=0.115 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHhhhhHhHHHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhh
Q 009895 34 VAYRKLVFTVTFFAGVFQSVFGLFRL-GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSS 112 (523)
Q Consensus 34 ~~~~~~~~~~~~l~G~~~~~lg~~~l-g~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~ 112 (523)
...++.+.++.+++|+++++++++++ +++.|++|+.|.++++.++|+.+....+++..|.....+...+
T Consensus 86 ~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~~~~---------- 155 (389)
T PF00860_consen 86 GYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDGLLV---------- 155 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT-B-----------
T ss_pred hhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccccccccc----------
Confidence 34578889999999999999999997 5889999999999999999999999999988876521111011
Q ss_pred cCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccCCCCCCCCCCC
Q 009895 113 LHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQ 192 (523)
Q Consensus 113 ~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip~~~p~~~~~~ 192 (523)
.++....+++.++++.+....+.+++.++ .+.++++++++++++.++....+-. +.+ .|+..+|.
T Consensus 156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ailigi~~g~i~~~~~g~~~~~~~-~~~----~~~~~~p~ 220 (389)
T PF00860_consen 156 -----GDGKNLGLAVLTLLFILLLSLFLKGFLRK-----GAILIGIIAGWIVAAILGVVDFSPS-VSS----APWFSLPS 220 (389)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTTSSH--HHH----S-SS----
T ss_pred -----ccccccccccccchhhhhhhhhhhhhccc-----ccchhhhhhhhhhhhcccccccCcc-ccc----cccccccc
Confidence 33445566666666666665554444332 2789999999999999874211100 111 12222221
Q ss_pred -CCCchh-hHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC----ccCCchhHHHHhHHHHHhhhcCCccCCCccchhhh
Q 009895 193 -LQLTGP-HLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----HLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAV 266 (523)
Q Consensus 193 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~ 266 (523)
++|.++ .....+...+..+++.+.|++.+..+.++..++ +.+.+|.+.++|++|+++|+||+.|.+.+..+.+.
T Consensus 221 ~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~ 300 (389)
T PF00860_consen 221 PFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGG 300 (389)
T ss_dssp ----------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccchh
Confidence 122221 233445555667778888888887777666554 45588999999999999999999998866666666
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHHH--HhhHhhhhhhHHHHHHHHHHhcccCCHHHHHhhhhcCc
Q 009895 267 NFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDK 329 (523)
Q Consensus 267 ~~~~Ga~t~~s~i~~~~~~l~~~~~--~~~ll~~iP~~vla~ili~~~~~l~~~~~~~~~~~~~~ 329 (523)
...+|.+||.++..++++++++.++ +++++..||.++++|.+++ .+.++-..+++.+.+.+.
T Consensus 301 i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~ 364 (389)
T PF00860_consen 301 IAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDL 364 (389)
T ss_dssp HHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS
T ss_pred hhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheeccc
Confidence 7778999999999999988888765 8999999999998887664 333333455666554443
No 14
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.76 E-value=1.5e-18 Score=149.12 Aligned_cols=116 Identities=33% Similarity=0.486 Sum_probs=102.2
Q ss_pred CCccCCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHh
Q 009895 390 PMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLAS 469 (523)
Q Consensus 390 ~~~~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~ 469 (523)
++.++.+++.+++++|+ |+|+|+++|++.+.+.+.+.+.+ .......+.+|+||++|++||++|+++|.++.+++++
T Consensus 2 ~~~~~~~~v~ii~~~g~-l~f~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~ 78 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-LFFANAEEFRDRIRKLIDEDPER--IKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRR 78 (117)
T ss_dssp CEEEEETTEEEEEEESE-ESHHHHHHHHHHHHHHHCCSSS----HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHH
T ss_pred CeeEEECCEEEEEEeeE-EEHHHHHHHHHHHHHhhhccccc--ccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHH
Confidence 45566789999999999 99999999999999987643100 0012347999999999999999999999999999999
Q ss_pred CCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHH
Q 009895 470 NGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEA 508 (523)
Q Consensus 470 ~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~A 508 (523)
+|++++++++++++++.|+++|+.+.++++++|+|++||
T Consensus 79 ~g~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 79 RGVQLVLVGLNPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp TTCEEEEESHHHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 999999999999999999999999999999999999998
No 15
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.74 E-value=1.2e-17 Score=140.95 Aligned_cols=102 Identities=24% Similarity=0.337 Sum_probs=94.5
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
+.+++.+++++|+ |+|+|+++|++.+.+.+++ ++.+.+++||++|+||||||+++|.+++++++++|++
T Consensus 5 ~~~~~~vi~l~G~-L~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~ 73 (106)
T TIGR02886 5 VKGDVLIVRLSGE-LDHHTAERVRRKIDDAIER----------RPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGE 73 (106)
T ss_pred EECCEEEEEEecc-cchhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCE
Confidence 4568999999999 9999999999999887652 3468999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHH
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAM 509 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al 509 (523)
++++++++++++.|+++|+.+.+ ++|++.++|+
T Consensus 74 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 74 VIVCNVSPAVKRLFELSGLFKII---RIYESEEEAL 106 (106)
T ss_pred EEEEeCCHHHHHHHHHhCCceEE---EEcCChHHhC
Confidence 99999999999999999999988 6999999874
No 16
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.72 E-value=2.4e-17 Score=139.73 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=92.9
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
..+++.+++++|+ |||+++++|++++.+.+.+ .+.+.+++||++|+|||+||+++|.+++++++++|++
T Consensus 7 ~~~~~~v~~l~G~-L~~~~a~~~~~~l~~~~~~----------~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~ 75 (109)
T cd07041 7 VWDGVLVLPLIGD-LDDERAEQLQERLLEAISR----------RRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGAR 75 (109)
T ss_pred EeCCEEEEeeeee-ECHHHHHHHHHHHHHHHHH----------cCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCe
Confidence 4567999999999 9999999999998776542 3468999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCcc-ccCCcccccCHHHHH
Q 009895 474 LVMASPRWQVIHKLKSAKLLD-RIGKGCVYLSVAEAM 509 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~-~~~~~~if~s~~~Al 509 (523)
++++++++++++.|+++|+.+ .+ ++|+|.+||+
T Consensus 76 l~l~g~~~~v~~~l~~~gl~~~~~---~~~~t~~~Al 109 (109)
T cd07041 76 TILTGIRPEVAQTLVELGIDLSGI---RTAATLQQAL 109 (109)
T ss_pred EEEEeCCHHHHHHHHHhCCChhhc---eeeccHHHhC
Confidence 999999999999999999987 44 7999999985
No 17
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.69 E-value=2e-14 Score=145.62 Aligned_cols=295 Identities=16% Similarity=0.144 Sum_probs=180.3
Q ss_pred CCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhHHhhhhHhHHHHHHHHHHHHH
Q 009895 4 SREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVI 82 (523)
Q Consensus 4 s~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~-lg~l~~~ip~~Vi~Gf~~gigl~i 82 (523)
+.+++.+++..-+.++.....++. ++.+.++.+++|++.+++|..+ ++|++|++|+++..|+++|+.+.+
T Consensus 79 r~Pi~~awStPGaAll~~~~~~~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f 149 (395)
T TIGR00843 79 KTPVLTAWSAPGAALLVTGFPGIS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQF 149 (395)
T ss_pred cCCeeeecCchHHHHHHHhcCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 456677776555555544333322 5677889999999999999999 699999999999999999998876
Q ss_pred HHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHH
Q 009895 83 GLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILST 162 (523)
Q Consensus 83 ~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~ 162 (523)
...-++.+. .++ .++...++..++.+++. | .++.++++++|+
T Consensus 150 ~l~~~~a~~--------------------------~~p---ll~~~mll~~l~~~r~~---P------r~avl~aLlvG~ 191 (395)
T TIGR00843 150 GLGAFAALD--------------------------GLF---LICFSMLLCWLASKAFA---P------RYAMIAALICGI 191 (395)
T ss_pred HHHHHHHHH--------------------------HhH---HHHHHHHHHHHHHHHhc---c------hHHHHHHHHHHH
Confidence 532221110 011 23333333333333322 2 237899999999
Q ss_pred HHHHHhhcCCCCeeEeeccCCCCCCC--CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHH
Q 009895 163 LIVYLTKADKHGVKIVKHIKGGLNPS--SAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMV 240 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~ip~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~ 240 (523)
++++..+..+. . +....++.| ..|+++|. ..+..++...++.+.....-.-+..+..||+.+.|+-+.
T Consensus 192 iva~~~G~~~~--~---~~~~~l~~p~~~~P~fs~~-----a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~ 261 (395)
T TIGR00843 192 AFSFALGDMNP--T---DLDFKIALPQFIAPDFSFA-----HSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIA 261 (395)
T ss_pred HHHHHhcCCCc--c---ccccccccceeeCCCCCHH-----HHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHH
Confidence 99998764221 1 111123233 35554432 234444444444443332222334455899999999999
Q ss_pred HHhHHHHHhhhcCCccCCCc------cchhhhhhhcCCCcchhHHHHHHHHHHHHHH---HhhHhhhhhhHHHHHHHHHH
Q 009895 241 AMGFMNIVGSLTSCYVATGS------FSRTAVNFSAGCQTVVSNIVMAITVLLSLEL---FTSLLYYTPIAILASIILSA 311 (523)
Q Consensus 241 a~G~aNivs~lfGg~p~~~~------~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~---~~~ll~~iP~~vla~ili~~ 311 (523)
..|++|+++++|||++.+-+ +....... -++|.-.+++..|++.+++.++ +..++..+|+...+++-=.+
T Consensus 262 ~tGl~sll~ApfGg~~~nlaaitaAic~G~~ah~-d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlA 340 (395)
T TIGR00843 262 AAGLAALFAAFAGGISIGIAAITAAICMGKDAHE-DKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLA 340 (395)
T ss_pred HHHHHHHHHhccCCchhhhhHHhHHHhcCccccc-CcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999999999999993322 22222233 3788899999999999988887 45688999998776653333
Q ss_pred hcccCCHHHHHhhhhcCchhHHHHHHHHHHHH----HH---hhhHHHHHHHHHH
Q 009895 312 LPGLIDINEAINIYKVDKLDFLACIGAFLGVL----FA---SVEIGLLAAVTIS 358 (523)
Q Consensus 312 ~~~l~~~~~~~~~~~~~~~d~~v~~~t~~~~~----~~---~~~~gi~~Gi~~s 358 (523)
-++-+. ..+..-.+. ..+.--.++||+.|. ++ .-.+|+++|+...
T Consensus 341 ll~~~~-~~l~~a~~~-~~~r~~a~~tflvtaSg~~~~gigaafWgl~~G~~~~ 392 (395)
T TIGR00843 341 LLGAIA-GNIKIALHE-DQERDAALIAFLATASGLHFLGIGSAFWGLCAGGLAY 392 (395)
T ss_pred HHHHHH-HHHHHHhcC-cchhHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 233221 222332322 223334445555443 22 3567888886543
No 18
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.65 E-value=6.9e-16 Score=128.58 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=84.5
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
+.+++.+++++|+ +||+|+++|++++.+.+.+ +..+.+|+||++|+||||||+++|.+++++++++|++
T Consensus 5 ~~~~v~ii~~~G~-l~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~ 73 (100)
T cd06844 5 KVDDYWVVRLEGE-LDHHSVEQFKEELLHNITN----------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQ 73 (100)
T ss_pred EECCEEEEEEEEE-ecHhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 4568999999999 9999999999999876542 3468999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCcccc
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRI 496 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~ 496 (523)
++++++++++++.|+++|+.+.+
T Consensus 74 l~l~~~~~~v~~~l~~~gl~~~~ 96 (100)
T cd06844 74 FVLTGISPAVRITLTESGLDKGX 96 (100)
T ss_pred EEEECCCHHHHHHHHHhCchhhh
Confidence 99999999999999999998754
No 19
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.54 E-value=2.1e-14 Score=121.35 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=91.5
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
..+++.+++++|+ ++|.|++.|++.+.+..++ ++.+.+++||++++++||+|+++|.++.++++++|++
T Consensus 9 ~~~~~~vi~~~G~-l~~~~~~~~~~~l~~~~~~----------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~ 77 (108)
T TIGR00377 9 VQEGVVIVRLSGE-LDAHTAPLLREKVTPAAER----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQ 77 (108)
T ss_pred EECCEEEEEEecc-cccccHHHHHHHHHHHHHh----------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCE
Confidence 4568999999999 9999999999999886652 3578999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHH
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAE 507 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~ 507 (523)
+.++++++++++.|+++|+.+.+ ++++|++|
T Consensus 78 ~~l~~~~~~~~~~l~~~~l~~~~---~i~~~~~~ 108 (108)
T TIGR00377 78 LVLVSVSPRVARLLDITGLLRII---PIYPTVEE 108 (108)
T ss_pred EEEEeCCHHHHHHHHHhChhhee---ccCCCCCC
Confidence 99999999999999999999988 58988764
No 20
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.53 E-value=6.2e-12 Score=125.26 Aligned_cols=273 Identities=17% Similarity=0.204 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhHHhhhhHhHHHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhhcCc
Q 009895 37 RKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 115 (523)
Q Consensus 37 ~~~~~~~~~l~G~~~~~lg~~~-lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 115 (523)
++.+.++-+++|++.++.|..+ ++|++|+||.++..++++|+-+-....-++.+ .+
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~-----------------------~~ 143 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTAL-----------------------QA 143 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------Hh
Confidence 5677788899999999999999 59999999999999999999887654333221 11
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccCCCCCCC--CCCCC
Q 009895 116 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPS--SAHQL 193 (523)
Q Consensus 116 ~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip~~~p~~--~~~~~ 193 (523)
++ .+....++..++.|++.+|+ +.+.+++.+.++++..+.-. .. ..+..++.| ..|.|
T Consensus 144 ---~P---~l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~~---~~~~~~~~p~~~~P~F 203 (378)
T PF03594_consen 144 ---DP---LLVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--PS---ALQLSLAHPVFTTPEF 203 (378)
T ss_pred ---HH---HHHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--cc---ccccccceeEEECCcc
Confidence 11 22333444445566666654 46667778888877765321 11 112233334 34555
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhh--cC
Q 009895 194 QLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS--AG 271 (523)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~--~G 271 (523)
+| ...+..++.+.++.+...-.-.-++-+..||+.+.|+-+...|++|++.+.|||++.+-+--..++... ++
T Consensus 204 s~-----~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah 278 (378)
T PF03594_consen 204 SW-----SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAH 278 (378)
T ss_pred cH-----HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccC
Confidence 43 345666777777777665555555667789999999999999999999999999998877777776554 33
Q ss_pred ---CCcchhHHHHHHHHHHHHHH---HhhHhhhhhhHHHHHHHHHHhcccCCHHHHHhhhhcCchhHHHHHHHHHHHH--
Q 009895 272 ---CQTVVSNIVMAITVLLSLEL---FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVL-- 343 (523)
Q Consensus 272 ---a~t~~s~i~~~~~~l~~~~~---~~~ll~~iP~~vla~ili~~~~~l~~~~~~~~~~~~~~~d~~v~~~t~~~~~-- 343 (523)
.|--.+++..|++.+++.++ ...++...|++.++.+-=.+.++-+ -..++.-++.++ +..-.++||+++.
T Consensus 279 ~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l-~~sl~~A~~~~~-~r~aAlvtFlvtaSG 356 (378)
T PF03594_consen 279 PDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTL-GGSLQTAFSDEK-YREAALVTFLVTASG 356 (378)
T ss_pred CCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHhcCcc-hhHHHHHHHHHHHcC
Confidence 34445889999988888877 4567889999876655322222222 122334443222 2234445555443
Q ss_pred --HH---hhhHHHHHHHHHHH
Q 009895 344 --FA---SVEIGLLAAVTISF 359 (523)
Q Consensus 344 --~~---~~~~gi~~Gi~~s~ 359 (523)
++ .-.+|+++|+....
T Consensus 357 isl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 357 ISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred CCcccccHHHHHHHHHHHHHh
Confidence 22 45678888887653
No 21
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.48 E-value=4.7e-13 Score=112.63 Aligned_cols=101 Identities=37% Similarity=0.582 Sum_probs=88.6
Q ss_pred cCCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCC
Q 009895 393 IKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGI 472 (523)
Q Consensus 393 ~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~ 472 (523)
.+.+++.+++++|+ ++|.|++.+++.+.+..+.. +..+.+++||++++++|++|+++|.++.++++++|+
T Consensus 5 ~~~~~~~v~~l~G~-l~~~~~~~l~~~~~~~~~~~---------~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~ 74 (107)
T cd07042 5 EEPPGVLIYRIDGP-LFFGNAEYFKDRLLRLVDED---------PPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGV 74 (107)
T ss_pred ccCCCEEEEEecCc-eEeehHHHHHHHHHHHhccC---------CCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCC
Confidence 34568999999999 99999999999998765421 225799999999999999999999999999999999
Q ss_pred EEEEEcCCHHHHHHHHHCCCccccCCccccc
Q 009895 473 ELVMASPRWQVIHKLKSAKLLDRIGKGCVYL 503 (523)
Q Consensus 473 ~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~ 503 (523)
++.++++++++++.++++|+.+.++....++
T Consensus 75 ~~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~ 105 (107)
T cd07042 75 ELYLAGLNPQVRELLERAGLLDEIGEENFFP 105 (107)
T ss_pred EEEEecCCHHHHHHHHHcCcHHHhCccccee
Confidence 9999999999999999999998886554443
No 22
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.41 E-value=1.5e-12 Score=111.61 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=87.5
Q ss_pred EEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEE
Q 009895 398 ILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMA 477 (523)
Q Consensus 398 i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~ 477 (523)
..++++.|+ ||..++..+++.+.+.+.+ .+.+.+++|+++|+||||+|++.|...++.++.+|+++.++
T Consensus 14 ~~vl~l~G~-lD~~~a~~~~e~~~~~~~~----------~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~ 82 (117)
T COG1366 14 ILVLPLIGE-LDAARAPALKETLLEVIAA----------SGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLV 82 (117)
T ss_pred EEEEEeeEE-EchHHHHHHHHHHHHHHhc----------CCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEE
Confidence 379999999 9999999999999976654 34566999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCCccccCCcccccCHHHHHH
Q 009895 478 SPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAME 510 (523)
Q Consensus 478 ~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~ 510 (523)
+++|++++.++.+|+.+.+ ..+++.+++..
T Consensus 83 ~i~p~v~~~~~~~gl~~~~---~~~~~~~~~~~ 112 (117)
T COG1366 83 GIQPEVARTLELTGLDKSF---IITPTELEAAL 112 (117)
T ss_pred eCCHHHHHHHHHhCchhhc---ccccchHHHHH
Confidence 9999999999999999876 46666555543
No 23
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.38 E-value=3.6e-12 Score=105.60 Aligned_cols=90 Identities=24% Similarity=0.280 Sum_probs=82.7
Q ss_pred CCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEE
Q 009895 395 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIEL 474 (523)
Q Consensus 395 ~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l 474 (523)
.+++.+++++|+ ++|.+++.+++.+.+..+ .+.+.+++|+++++++|++|+++|.++.++++++|.++
T Consensus 6 ~~~~~ii~l~G~-l~~~~~~~~~~~~~~~~~-----------~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v 73 (99)
T cd07043 6 RGGVLVVRLSGE-LDAATAPELREALEELLA-----------EGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRL 73 (99)
T ss_pred ECCEEEEEEece-ecccchHHHHHHHHHHHH-----------cCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeE
Confidence 347899999999 999999999999877544 23689999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHCCCcccc
Q 009895 475 VMASPRWQVIHKLKSAKLLDRI 496 (523)
Q Consensus 475 ~l~~~~~~v~~~l~~~gl~~~~ 496 (523)
.++++++++++.|++.|+.+.+
T Consensus 74 ~i~~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 74 VLVNVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred EEEcCCHHHHHHHHHhCcceee
Confidence 9999999999999999998876
No 24
>PF13466 STAS_2: STAS domain
Probab=99.22 E-value=4.5e-11 Score=95.09 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=74.3
Q ss_pred EEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC
Q 009895 401 IRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR 480 (523)
Q Consensus 401 i~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 480 (523)
++++|+ +++.+++.+++.+.+.++ .+ +.+++|+++|+++|++|+++|....++++++|.++.+.+++
T Consensus 1 l~l~G~-l~~~~~~~l~~~l~~~~~-----------~~-~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~ 67 (80)
T PF13466_consen 1 LRLSGE-LDIATAPELRQALQALLA-----------SG-RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPS 67 (80)
T ss_pred CEEEEE-EeHHHHHHHHHHHHHHHc-----------CC-CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 478999 999999999999998764 23 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCc
Q 009895 481 WQVIHKLKSAKLL 493 (523)
Q Consensus 481 ~~v~~~l~~~gl~ 493 (523)
+.+++.++..|+.
T Consensus 68 ~~~~~ll~~~gld 80 (80)
T PF13466_consen 68 PALRRLLELLGLD 80 (80)
T ss_pred HHHHHHHHHhCcC
Confidence 9999999999873
No 25
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.19 E-value=2.4e-08 Score=110.70 Aligned_cols=302 Identities=13% Similarity=0.080 Sum_probs=190.7
Q ss_pred CCCCCccccCchHHHHHH---HHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSML---LSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAG 77 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~g 77 (523)
||+-|-.++|+|+.+++. ++...... ..+|++..+.+.+.++++.++++.+....++||+.+--=..|-.-
T Consensus 420 f~GQPL~IlG~TGPilvF~~~ly~~c~~~------~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~l 493 (900)
T TIGR00834 420 LAAQPLLVVGFSGPLLVFEEAFFSFCESN------GLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFL 493 (900)
T ss_pred hcCCceEEecCcccHHHHHHHHHHHHhhc------CCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Confidence 455555666655555443 34444432 246889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCccccCCC-cchH-----------HHH-----HHHH-----------hhcCcCccchhHHHHHHHH
Q 009895 78 AAIVIGLQQLKGLLGISHFTNK-TDVV-----------SVL-----GSVF-----------SSLHHSYWYPLNFVLGCSF 129 (523)
Q Consensus 78 igl~i~~~ql~~~~G~~~~~~~-~~~~-----------~~~-----~~~~-----------~~~~~~~~~~~~~~lg~~~ 129 (523)
|+++.+...++.+...-...+. ..+. ... ..+. ...++ .-..++++++.+
T Consensus 494 Is~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~--~~llsliL~lgT 571 (900)
T TIGR00834 494 ISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPN--TALLSLVLMLGT 571 (900)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccccccccccccch--HHHHHHHHHHHH
Confidence 9999998888776442110000 0000 000 0000 00011 122344555555
Q ss_pred HHHHHHHHHHhhh--cccc--cccccchhhHHHHHHHHHHHHhh-cCCCCeeEeeccCCCCCCCCCC--------CCC--
Q 009895 130 LIFLLIARFIGRR--NKKL--FWLPAIAPLLSVILSTLIVYLTK-ADKHGVKIVKHIKGGLNPSSAH--------QLQ-- 194 (523)
Q Consensus 130 l~~l~~~~~~~~~--~~~~--~~~p~~~~li~vv~~~~~~~~~~-~~~~~~~~~g~ip~~~p~~~~~--------~~~-- 194 (523)
+.+.+.++.+++. +++. ..+.-.+..+++++.+.+.+.++ .+.+.. ++|.++++ ..| .+.
T Consensus 572 f~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~~~kl----~Vp~~f~p-t~p~~R~W~i~p~~~~ 646 (900)
T TIGR00834 572 FFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYTQKL----SVPSGLKV-TNPSARGWFIPPLGEN 646 (900)
T ss_pred HHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCccccc----CCCCCcCC-CCCCCCCeEEcccccc
Confidence 5555555544311 1110 01223456778888888888764 111111 34555431 112 111
Q ss_pred --CchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC---CccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhh
Q 009895 195 --LTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKG---YHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS 269 (523)
Q Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~ 269 (523)
+.+-....++..|+.++++.++|.-.++....++.. +..-.+-++.-.|+.|.++|+||--+.+++..+|....+
T Consensus 647 ~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~ 726 (900)
T TIGR00834 647 RPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHAN 726 (900)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHh
Confidence 111123456677888999999999887776654322 123356789999999999999998888888887766444
Q ss_pred c-----------------CC-CcchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHhcccC
Q 009895 270 A-----------------GC-QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLI 316 (523)
Q Consensus 270 ~-----------------Ga-~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~~~l~ 316 (523)
+ ++ -+|+++++.++++.+.+ +..|++.+||++||.|+.++.|+.-+
T Consensus 727 sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv-~~~PvL~~IP~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 727 ALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSI-LMEPILKRIPLAVLFGIFLYMGVTSL 790 (900)
T ss_pred HHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 2 22 26899999998765554 67889999999999999999998744
No 26
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.16 E-value=2.2e-09 Score=108.95 Aligned_cols=288 Identities=12% Similarity=0.084 Sum_probs=175.1
Q ss_pred CCCCCccccCchHHHHHHHHHHHh--hhcCCCC----Chhh---HHHHHHHHHHHHHHHHHHHHHhhh-hhHHhhhhHhH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQ--NVQDPAA----DPVA---YRKLVFTVTFFAGVFQSVFGLFRL-GFLVDFLSHAA 70 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~--~~~~~~~----~~~~---~~~~~~~~~~l~G~~~~~lg~~~l-g~l~~~ip~~V 70 (523)
||++-+...||+-+.-.-+-+++. ++..+.+ +++. .+..+-++.++++++|+++|+.++ |++.||+.+-.
T Consensus 69 fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plt 148 (510)
T KOG1292|consen 69 FGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLT 148 (510)
T ss_pred hhcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChh
Confidence 799999999998887777777766 3322211 1112 245667899999999999999996 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccchhHHHHHHHHHHHHHHHHHH---hhh-c--c
Q 009895 71 IVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYPLNFVLGCSFLIFLLIARFI---GRR-N--K 144 (523)
Q Consensus 71 i~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~l~~~~~~---~~~-~--~ 144 (523)
+.=.++-+|+.+.....+.+ - .+| -+|+..++.+++...+ .++ + +
T Consensus 149 i~P~v~lvgl~l~~~~~~~~-------------------~-------~~w---eI~l~~~llli~fsqy~~~~~~~~~~~ 199 (510)
T KOG1292|consen 149 IVPLVALVGLGLFQDGFPKL-------------------G-------KHW---EISLPEILLLILFSQYASLPKKGFGSR 199 (510)
T ss_pred hhhHHHHHhhhhHHhhhhhh-------------------h-------hhe---eecHHHHHHHHHHHHhhhccccccccc
Confidence 99888888887663322211 0 011 1233333333333322 111 1 1
Q ss_pred cccccccchhhHHHHHHHHHHHHh---hcCCC-------CeeE-eeccCCCCCCCCCCC-CCC-----chhhHHHHHHHH
Q 009895 145 KLFWLPAIAPLLSVILSTLIVYLT---KADKH-------GVKI-VKHIKGGLNPSSAHQ-LQL-----TGPHLGQTAKIG 207 (523)
Q Consensus 145 ~~~~~p~~~~li~vv~~~~~~~~~---~~~~~-------~~~~-~g~ip~~~p~~~~~~-~~~-----~~~~~~~~~~~~ 207 (523)
+...+...+.++.+.+.-+.++.+ |...+ .-++ -..+-+.-|+...|- +.| +......+
T Consensus 200 ~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m---- 275 (510)
T KOG1292|consen 200 RIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAM---- 275 (510)
T ss_pred ccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCCCcccHHHHHHH----
Confidence 111122224555666665665554 21111 0000 000111223333221 222 22223333
Q ss_pred HHHHHHHHHHHHHHhHHhhhh----cCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhh-cCCCcchhHHHHH
Q 009895 208 LISAVVALTEAIAVGRSFASI----KGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS-AGCQTVVSNIVMA 282 (523)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~-~Ga~t~~s~i~~~ 282 (523)
++.++++++|++..-.+.++. ...+...||....+|++.+++|+||.-.++.+++....... +...||.+--++|
T Consensus 276 ~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa 355 (510)
T KOG1292|consen 276 MAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAA 355 (510)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhH
Confidence 345566677776654444433 33457789999999999999999998777766666555444 8888999888888
Q ss_pred HHHHHHHHH--HhhHhhhhhhHHHHHHHHHHhcccCCHHHHH
Q 009895 283 ITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAI 322 (523)
Q Consensus 283 ~~~l~~~~~--~~~ll~~iP~~vla~ili~~~~~l~~~~~~~ 322 (523)
.+++++..+ ++.+++.||.++.||++-. ++.|+.--.+.
T Consensus 356 ~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv~avgLS 396 (510)
T KOG1292|consen 356 GFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMVGAVGLS 396 (510)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHHHHHhhh
Confidence 888888777 8999999999999998643 55555333333
No 27
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.14 E-value=9.9e-09 Score=100.23 Aligned_cols=273 Identities=17% Similarity=0.171 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhHHhhhhHhHHHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhhcCc
Q 009895 37 RKLVFTVTFFAGVFQSVFGLFR-LGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHH 115 (523)
Q Consensus 37 ~~~~~~~~~l~G~~~~~lg~~~-lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 115 (523)
...+.++-+.+|++..+.|.+| ++|+++-||+++..++++||=+-+....++..-
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~------------------------ 157 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALP------------------------ 157 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccC------------------------
Confidence 4667788899999999999999 799999999999999999988776655444221
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccCCC--CCCCCCCCC
Q 009895 116 SYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGG--LNPSSAHQL 193 (523)
Q Consensus 116 ~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip~~--~p~~~~~~~ 193 (523)
.++ .+.+..++..++.|.+.+|+ +...++++|.+++...|.-.+ +..+.- .|.+..|+|
T Consensus 158 --~~p---~l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-----~~~~~~~~~p~~v~P~F 218 (402)
T COG3135 158 --TQP---LLVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-----ALVALEISTPTWVTPEF 218 (402)
T ss_pred --CCh---HHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-----cccccccCcceeeCCcc
Confidence 111 22233334445567666664 567778888888888764211 111112 233334554
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhc---
Q 009895 194 QLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSA--- 270 (523)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~--- 270 (523)
++ ..++..++.+.++.+...-.-.-++-+..||+.+++--+.+.|+..+.++.||++..+-..-.-++...-
T Consensus 219 s~-----~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaH 293 (402)
T COG3135 219 SF-----AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAH 293 (402)
T ss_pred cH-----HHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCC
Confidence 43 2455566667777665544334444566899999999999999999999999999877544433333222
Q ss_pred --CCCcchhHHHHHHHHHHHHHHHh---hHhhhhhhHHHHHHHHHHhcccCC--HHHHHhhhhcCchhHHHHHHHHHHHH
Q 009895 271 --GCQTVVSNIVMAITVLLSLELFT---SLLYYTPIAILASIILSALPGLID--INEAINIYKVDKLDFLACIGAFLGVL 343 (523)
Q Consensus 271 --Ga~t~~s~i~~~~~~l~~~~~~~---~ll~~iP~~vla~ili~~~~~l~~--~~~~~~~~~~~~~d~~v~~~t~~~~~ 343 (523)
-+|--.+++++|+.-++..+|.+ .++..+|+..+..+ +|+-|+. ...+..-.+. .++.--.++||++|.
T Consensus 294 pD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l---AGLALlg~~~~~l~~A~~~-~~~R~aAlvtF~VTa 369 (402)
T COG3135 294 PDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL---AGLALLGTLGNSLQAALKD-EREREAALVTFLVTA 369 (402)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH---HHHHHHHHHHHHHHHHhcC-cccchhhhhheeehh
Confidence 24556789999998888888844 56778998765543 2332221 1222232331 112223334444333
Q ss_pred ----HH---hhhHHHHHHHHHHHHH
Q 009895 344 ----FA---SVEIGLLAAVTISFAK 361 (523)
Q Consensus 344 ----~~---~~~~gi~~Gi~~s~~~ 361 (523)
++ +-.+|+++|.....+.
T Consensus 370 SG~tl~GIgaafWGLvaG~~~~~L~ 394 (402)
T COG3135 370 SGLTLFGIGAAFWGLVAGLLVLALL 394 (402)
T ss_pred ccceeecccHHHHHHHHHHHHHHHH
Confidence 22 4567888887655444
No 28
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.12 E-value=7.1e-08 Score=104.41 Aligned_cols=304 Identities=12% Similarity=0.114 Sum_probs=192.6
Q ss_pred CCCCCccccCchHHHHHHH---HHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLL---SALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAG 77 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~g 77 (523)
||+-|-.++|+|+.+.+.- ..+... ++.+|++..+.+++.+.++.+++..+....+++|+.+.-=..|-.-
T Consensus 411 fggQPLlIlg~TgP~lVfe~~lf~f~~~------~~~dyl~~r~wVglW~~~l~illaa~~as~lv~~~TRfteEiF~~L 484 (876)
T KOG1172|consen 411 FGGQPLLILGVTGPLLVFEKALFKFCKD------NGLDYLAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEIFGLL 484 (876)
T ss_pred hcCCceEEEecCccHHHHHHHHHHHHhh------CCCchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHH
Confidence 4555666666655554433 333333 3467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCccccCCCc-c--h---H-HHHHHHHhhcCcC----ccchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 009895 78 AAIVIGLQQLKGLLGISHFTNKT-D--V---V-SVLGSVFSSLHHS----YWYPLNFVLGCSFLIFLLIARFIGRRNKKL 146 (523)
Q Consensus 78 igl~i~~~ql~~~~G~~~~~~~~-~--~---~-~~~~~~~~~~~~~----~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~ 146 (523)
|+++.+.-.++.+.+........ . . . ..... -.+.... .+.+.+.+++++..+..+......|++++.
T Consensus 485 Is~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s 563 (876)
T KOG1172|consen 485 ISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPE-CESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSS 563 (876)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccccccCCccccccccc-ccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999888555432100000 0 0 0 00000 0000000 012233333333222222222233444433
Q ss_pred cccc--------cchhhHHHHHHHHHHHHhh-cCCCCeeEeeccCCCCCCCCC--------CCCCCchhhHHHHHHHHHH
Q 009895 147 FWLP--------AIAPLLSVILSTLIVYLTK-ADKHGVKIVKHIKGGLNPSSA--------HQLQLTGPHLGQTAKIGLI 209 (523)
Q Consensus 147 ~~~p--------~~~~li~vv~~~~~~~~~~-~~~~~~~~~g~ip~~~p~~~~--------~~~~~~~~~~~~~~~~~~~ 209 (523)
.++| -.+..+++++-+.+.+..+ .....+. .|..+|++.- |.-+..+.....++..++.
T Consensus 564 ~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~----vp~~~~~t~~~~rgw~v~~~~~~P~~~~~~A~ipall 639 (876)
T KOG1172|consen 564 RYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLP----VPSVFPPTWPFDRGWFVPPFGKNPWWYVFAALIPALL 639 (876)
T ss_pred CccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccc----cCcCCCCCCcccCCeeeCCCCCCCHHHHHHHHHHHHH
Confidence 3333 3345666777777777764 2222222 2333332211 1111222345667777888
Q ss_pred HHHHHHHHHHHHhHHhhhhcC---CccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhc----------------
Q 009895 210 SAVVALTEAIAVGRSFASIKG---YHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSA---------------- 270 (523)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~---~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~---------------- 270 (523)
++++-++|.-.++....++.. +..-..-+|+-.|+.|.++|+||=-+.+++..+|-...++
T Consensus 640 l~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i 719 (876)
T KOG1172|consen 640 LTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQI 719 (876)
T ss_pred HHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCcccc
Confidence 999999999888876655432 2244556899999999999999999999999988776553
Q ss_pred -CCC-cchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHhcccC
Q 009895 271 -GCQ-TVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLI 316 (523)
Q Consensus 271 -Ga~-t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~~~l~ 316 (523)
|.| .|+++++.++++. +..+..|++..||++||-|+..+.|+.=+
T Consensus 720 ~~V~EQRvtgll~~llvg-ls~~~~pvL~~IP~~VL~GvFlYMgv~SL 766 (876)
T KOG1172|consen 720 VGVREQRVTGLLQFLLVG-LSVLLLPVLKLIPMPVLYGVFLYMGVSSL 766 (876)
T ss_pred ccchhhhhHHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHhhccC
Confidence 333 4889999999887 44478999999999999999999998744
No 29
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=98.21 E-value=2.8e-07 Score=97.10 Aligned_cols=309 Identities=13% Similarity=0.191 Sum_probs=0.9
Q ss_pred CCCCCccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHHHHH
Q 009895 1 MGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAI 80 (523)
Q Consensus 1 fGss~~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~gigl 80 (523)
||+.|-..+|+|+.+.+.-.. +.... .+..-+|++.-....+.++++.+++..+....++||+.+..=..|-.-|++
T Consensus 84 f~gQPL~Ilg~TgP~~vf~~~-l~~~~--~~~~~~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~ 160 (510)
T PF00955_consen 84 FSGQPLTILGSTGPVLVFEKI-LYKFC--KSYGLDFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISI 160 (510)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455555566666555443322 11111 112246788888999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCccccCCC-cch-------------------------H---HHHHHH----HhhcCcC----------c
Q 009895 81 VIGLQQLKGLLGISHFTNK-TDV-------------------------V---SVLGSV----FSSLHHS----------Y 117 (523)
Q Consensus 81 ~i~~~ql~~~~G~~~~~~~-~~~-------------------------~---~~~~~~----~~~~~~~----------~ 117 (523)
+.+...++.+.......+- .++ . ..+... ..+.+.. +
T Consensus 161 iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~ 240 (510)
T PF00955_consen 161 IFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPPENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQ 240 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9999888876554210000 000 0 000000 0000000 0
Q ss_pred cch----hHHHHHHHHHHHHHHHHHHhhh--cccc--cccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccCCCCCCCC
Q 009895 118 WYP----LNFVLGCSFLIFLLIARFIGRR--NKKL--FWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSS 189 (523)
Q Consensus 118 ~~~----~~~~lg~~~l~~l~~~~~~~~~--~~~~--~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip~~~p~~~ 189 (523)
..+ .++++.+.++.+...++.+++. +++. ..+.-.+..+++++-+.+.+.++.+.+.. ++|.++.+..
T Consensus 241 ~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~~vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~ 316 (510)
T PF00955_consen 241 YQPDTALLSLILALGTFWLAYTLRQFKNSPYFPRWVREIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTS 316 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccHHHHHhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCC
Confidence 111 2233344444433333332211 1110 11233455667777777776655322222 2333321110
Q ss_pred -------CCCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcC---CccCCchhHHHHhHHHHHhhhcCCccCC
Q 009895 190 -------AHQL-QLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKG---YHLDGNKEMVAMGFMNIVGSLTSCYVAT 258 (523)
Q Consensus 190 -------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~el~a~G~aNivs~lfGg~p~~ 258 (523)
.+.+ +..+-....++..++.++++-++|.-.++....++.. +..-.+-++.-.|+.|.++|++|--..+
T Consensus 317 ~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~ 396 (510)
T PF00955_consen 317 PGKRGWFVNPFGSLPWWAIFAAIIPALLLTILFFMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMN 396 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcc
Confidence 0011 0011112334445677888888888776655443221 1233355789999999999999988888
Q ss_pred Cccchhhhhhhc-----------------CC-CcchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHhcccCC
Q 009895 259 GSFSRTAVNFSA-----------------GC-QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLID 317 (523)
Q Consensus 259 ~~~s~s~~~~~~-----------------Ga-~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~~~l~~ 317 (523)
++..+|....++ +. -+|+++++..+++.+.+ ++.|++.+||++||.|+.++.|+.-++
T Consensus 397 aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~EqRvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~ 472 (510)
T PF00955_consen 397 AATPQSPMHVRSLAVESETSAPGEKPKIVGVREQRVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLS 472 (510)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cCccCCHHHhCcccEEeccccCCCCCeeCeEEEecccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeec
Confidence 888777665442 22 25889999988776555 678999999999999999999987553
No 30
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=98.19 E-value=9.3e-06 Score=64.97 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=70.8
Q ss_pred EEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC
Q 009895 400 TIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP 479 (523)
Q Consensus 400 ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 479 (523)
.+.++|+ |+=.+...+-+...... ++.+.+-+|+++|..+||+|+..|.++.+.+|++|..+.+.++
T Consensus 13 tL~LsGe-L~r~tl~~lw~~r~~~~------------~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~ 79 (99)
T COG3113 13 TLVLSGE-LDRDTLLPLWSQREAQL------------KQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGV 79 (99)
T ss_pred eEEEecc-ccHHHHHHHHHHHHHHc------------cccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecC
Confidence 5779999 87666665555554432 3347899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCcccc
Q 009895 480 RWQVIHKLKSAKLLDRI 496 (523)
Q Consensus 480 ~~~v~~~l~~~gl~~~~ 496 (523)
+++++...+..|+.+-+
T Consensus 80 p~~L~tLa~Ly~l~~~l 96 (99)
T COG3113 80 PEQLRTLAELYNLSDWL 96 (99)
T ss_pred cHHHHHHHHHhCcHhhh
Confidence 99999999999987654
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.00 E-value=0.037 Score=55.23 Aligned_cols=237 Identities=16% Similarity=0.164 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHhhh-hhHHhhhhHhHHHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhhcCcCccch
Q 009895 42 TVTFFAGVFQSVFGLFRL-GFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSSLHHSYWYP 120 (523)
Q Consensus 42 ~~~~l~G~~~~~lg~~~l-g~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (523)
+..++.|++-++++++|. .++++.=++-|.+|.+--.|+.=..+|++++..... .+. ..+
T Consensus 146 algilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~----------------~~~---~~~ 206 (492)
T PF11840_consen 146 ALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWAN----------------GFD---MGY 206 (492)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHh----------------ccC---ccH
Confidence 578899999999999996 577899999999998888888888888887653221 111 112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccCCCCCCCC----CCC---C
Q 009895 121 LNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSS----AHQ---L 193 (523)
Q Consensus 121 ~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip~~~p~~~----~~~---~ 193 (523)
..+++=.++.++..++.++.|||. .+| +.-+++.++++.+|... ++.+ +.|+|... |.. +
T Consensus 207 i~fvvi~~tiv~Ya~L~k~~KrWL---aIP-----l~~~~a~~~a~~lGa~f-~f~t----~pglp~lnP~YWWge~tGw 273 (492)
T PF11840_consen 207 IAFVVIIVTIVLYAYLAKIEKRWL---AIP-----LCSILAGVLAFALGAPF-EFTT----EPGLPNLNPMYWWGEETGW 273 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhccchh---hhh-----HHHHHHHHHHHHcCCCc-eeec----CCCCCCCCCcccccCCccc
Confidence 222222223333333444455543 233 22234445556655421 1211 22333211 100 1
Q ss_pred CCch---hhHHHHHHHHHHHHHHHHHHH----HHHhHHhhhh-cCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhh
Q 009895 194 QLTG---PHLGQTAKIGLISAVVALTEA----IAVGRSFASI-KGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTA 265 (523)
Q Consensus 194 ~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~ 265 (523)
...+ +.....++.++.....=.-|. +..-..+.++ .+...|.|+-.....+=|++++.+||--.+.+.+.-.
T Consensus 274 ~LglP~~~hfiav~PFAiLAVaMWSpDflghrvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTym 353 (492)
T PF11840_consen 274 QLGLPTLEHFIAVLPFAILAVAMWSPDFLGHRVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGTYM 353 (492)
T ss_pred ccCCCcHHHHHHhccHHHHHHHHhCchHHHHHHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccchhhh
Confidence 1111 123333343321111111111 1111122222 2335888999999999999999999987776665555
Q ss_pred hhhh-cCCCcchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHH
Q 009895 266 VNFS-AGCQTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILS 310 (523)
Q Consensus 266 ~~~~-~Ga~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~ 310 (523)
+-.. +.---|-..+.+++++++.....-|.=-.+=.|++...+++
T Consensus 354 IPaaIaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlv 399 (492)
T PF11840_consen 354 IPAAIAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLV 399 (492)
T ss_pred hhHHHhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHH
Confidence 4333 23233567788899888888776664333334556666665
No 32
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=95.17 E-value=0.011 Score=49.43 Aligned_cols=105 Identities=7% Similarity=-0.027 Sum_probs=66.9
Q ss_pred cEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEec-CCCccChHHHHHHHHHHHHHHhCCCEEE
Q 009895 397 GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMS-NSMNIDTSGILVLEELHKKLASNGIELV 475 (523)
Q Consensus 397 ~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s-~v~~iDssgl~~L~~~~~~~~~~g~~l~ 475 (523)
++..++++|. ++-....++.+.+.+.+++ .+.-.+.+|++ ++..++..+.....++.....++=.++.
T Consensus 1 ~il~v~~~g~-~t~ed~~~~~~~~~~~~~~----------~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~A 69 (109)
T PF11964_consen 1 NILAVRVSGK-LTEEDYKELLPALEELIAD----------HGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIA 69 (109)
T ss_dssp S-EEEEEEEE-E-HHHHHHHHHHHHHHHTT----------SSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEE
T ss_pred CEEEEEEeee-eCHHHHHHHHHHHHHHHhc----------CCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEE
Confidence 4678899999 7777777777777665542 34568999999 8888888776655544333222225778
Q ss_pred EEcCCHHHHHHHHHCCCccccCCcccc--cCHHHHHHHHh
Q 009895 476 MASPRWQVIHKLKSAKLLDRIGKGCVY--LSVAEAMEACL 513 (523)
Q Consensus 476 l~~~~~~v~~~l~~~gl~~~~~~~~if--~s~~~Al~~~~ 513 (523)
+++-++-.+.+.+..+... -.+.++| .+.+||++|++
T Consensus 70 vV~~~~~~~~~~~~~~~~~-~~~~~~F~~~~~~~A~~WL~ 108 (109)
T PF11964_consen 70 VVGDSEWIRMIANFFAAFP-PIEVRYFPPDEEEEALAWLR 108 (109)
T ss_dssp EE-SSCCCHHHHHHHHHH--SSEEEEE--SSHHHHHHHHC
T ss_pred EEECcHHHHHHHHHHHhcC-CCceEEECCCCHHHHHHHHc
Confidence 8887764444433332221 1234899 99999999986
No 33
>PRK10720 uracil transporter; Provisional
Probab=94.02 E-value=0.45 Score=50.17 Aligned_cols=61 Identities=13% Similarity=-0.005 Sum_probs=48.4
Q ss_pred hHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhhHhhhhhhH
Q 009895 238 EMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIA 302 (523)
Q Consensus 238 el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~ 302 (523)
++...=.++-++++++|+-++...+.++-|...+++||.++-....+-..++. ++..+||.
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li----~lg~~pk~ 321 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAI----LLSCVGKL 321 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHH----HHHHHHHH
Confidence 55677789999999999999888888888999999999999988875555553 34456663
No 34
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=93.84 E-value=3.5 Score=45.26 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhh-------hcCC
Q 009895 200 LGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNF-------SAGC 272 (523)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~-------~~Ga 272 (523)
+..-+..++..+++.+=+.++.+... ..++...|++--+..++.++||+.|-...-..++... ..|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~la------glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAILA------GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHc------CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 33444556677777777777765432 3567778999999999999999988654333332211 1232
Q ss_pred Ccc----------hhHHHHHHHHHHHHHH-HhhHhhhhhhHHHHHHHHHHhcccC
Q 009895 273 QTV----------VSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSALPGLI 316 (523)
Q Consensus 273 ~t~----------~s~i~~~~~~l~~~~~-~~~ll~~iP~~vla~ili~~~~~l~ 316 (523)
... ..++.+|++.+++.++ ++.+.+++|.+++.|.+--+++.++
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 222 6677788877777776 8899999999999997766555443
No 35
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=93.81 E-value=0.33 Score=37.58 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHH-HHHHHHHHHH--hCCCEEEEEcCCHHHHHHHH
Q 009895 412 NANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGIL-VLEELHKKLA--SNGIELVMASPRWQVIHKLK 488 (523)
Q Consensus 412 n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~-~L~~~~~~~~--~~g~~l~l~~~~~~v~~~l~ 488 (523)
+...+++.+.+.+++. +.|+|||++++.+-+|-++ ++-.+.+++. .-..++.+.+.+++++++++
T Consensus 2 ~G~~~~~~i~~~l~~~------------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG------------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred ChHHHHHHHHHHHhcC------------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 3567778887776642 3599999999999999887 5555555543 23468999999999999887
Q ss_pred H
Q 009895 489 S 489 (523)
Q Consensus 489 ~ 489 (523)
+
T Consensus 70 ~ 70 (74)
T PF14213_consen 70 R 70 (74)
T ss_pred H
Confidence 5
No 36
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=92.02 E-value=2.1 Score=46.60 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhh---cCC---Cc---
Q 009895 204 AKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS---AGC---QT--- 274 (523)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~---~Ga---~t--- 274 (523)
+..++..+++.+=++++.+.. .| .++...|++-=++-++-++|||.|.-.+-..++.... .=+ .+
T Consensus 25 l~AGltva~valP~ama~a~~----aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~ 98 (554)
T COG0659 25 LLAGLTVAAVALPLAMAFAIA----AG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA 98 (554)
T ss_pred HHHHHHHHHHHhHHHHHHHHH----cC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHH
Confidence 334455556665555555442 33 7888999999999999999999987633222222111 111 22
Q ss_pred --chhHHHHHHHHHHHHHH-HhhHhhhhhhHHHHHHHHHHhcccC
Q 009895 275 --VVSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSALPGLI 316 (523)
Q Consensus 275 --~~s~i~~~~~~l~~~~~-~~~ll~~iP~~vla~ili~~~~~l~ 316 (523)
-.+.+.+|++.+++.++ ++.+..+||.+|+-|.+--+++.++
T Consensus 99 ~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~ 143 (554)
T COG0659 99 LAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII 143 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 23455566666666655 8899999999999998776665543
No 37
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.42 E-value=0.39 Score=39.69 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=59.2
Q ss_pred EEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 442 VIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 442 vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
+++|+.+|=+-+...+.-=.+..+.++++|.++++..-+ .+..+.|+..|+. +++++++.+.+.+.++++++
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhc
Confidence 578999999998888887788899999999999888654 5788899999986 56679999999999999874
No 38
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=91.14 E-value=1.1 Score=47.13 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=40.0
Q ss_pred hhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCC--CcchhHHHHHHHHHHHHHHHhhHhhhhhhH
Q 009895 237 KEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGC--QTVVSNIVMAITVLLSLELFTSLLYYTPIA 302 (523)
Q Consensus 237 ~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga--~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~ 302 (523)
+.+..--.++-++++.+|.-+ ++..|......|. -||..+-.......+++. ++..+|+.
T Consensus 280 ~~l~rg~~aDGlat~iag~fg--~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili----~lgl~pk~ 341 (451)
T COG2233 280 PRLRRGLLADGLATLIAGLFG--GFPNTTFAQNIGVVALTGVYSRYVIAGAAVILI----LLGLFPKF 341 (451)
T ss_pred cccccceeeccHHHHHHHhcC--CCCCCchhhceeeeeeccCChhHHHHHHHHHHH----HHHhhHHH
Confidence 355666788999999998875 5666666666665 678777776665544443 34455653
No 39
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=89.50 E-value=0.71 Score=42.76 Aligned_cols=78 Identities=14% Similarity=0.300 Sum_probs=65.1
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCccccCCcccccCHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEA 511 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~ 511 (523)
...+.+.+|+|++-|+.-.++--=.+..+.++.++.++.++.- +..+.+.|++.||. +.++.+|.+.-.|.++
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~ 82 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQY 82 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHH
Confidence 4578999999999999777777667778899999999998864 45678889999995 5667899999999999
Q ss_pred Hhhcc
Q 009895 512 CLTSK 516 (523)
Q Consensus 512 ~~~~~ 516 (523)
+++++
T Consensus 83 ~~~~~ 87 (262)
T KOG3040|consen 83 LEENQ 87 (262)
T ss_pred HHhcC
Confidence 98765
No 40
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=87.64 E-value=4.3 Score=42.86 Aligned_cols=63 Identities=16% Similarity=-0.090 Sum_probs=40.9
Q ss_pred chhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhhHhhhhhhH
Q 009895 236 NKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPIA 302 (523)
Q Consensus 236 n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~ 302 (523)
++++..--.++-++++++|+-++......+-|...=+-||..+-.......+++. ++..+||.
T Consensus 274 ~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ili----llgl~PK~ 336 (433)
T PRK11412 274 NTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCL----LVALIPAL 336 (433)
T ss_pred CcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHH----HHHHHHHH
Confidence 5678888889999999999887544444444444445777777776665554443 23455653
No 41
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=87.00 E-value=1.8 Score=35.51 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=54.8
Q ss_pred EEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHH---HhCCCEE
Q 009895 398 ILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKL---ASNGIEL 474 (523)
Q Consensus 398 i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~---~~~g~~l 474 (523)
..++++.|+ =+=-|+..|-+-+.+++++..+ .+.+.+.+++ ++.|+++|..++|.++.+.+ .++|.++
T Consensus 9 ~g~l~i~Ge-SypEn~~~Fy~Pi~~wl~~Yl~-------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V 79 (99)
T PF09345_consen 9 TGRLEISGE-SYPENAFAFYQPILDWLEAYLA-------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKV 79 (99)
T ss_pred CCEEEEecc-cCccCHHHHHHHHHHHHHHHHh-------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcE
Confidence 457899999 8888999999999888886642 3456777887 67899999999888888777 5567666
Q ss_pred EE
Q 009895 475 VM 476 (523)
Q Consensus 475 ~l 476 (523)
.+
T Consensus 80 ~v 81 (99)
T PF09345_consen 80 TV 81 (99)
T ss_pred EE
Confidence 54
No 42
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=85.86 E-value=1.5 Score=34.99 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=38.3
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhC-CCEEEEEcCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASN-GIELVMASPR 480 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~-g~~l~l~~~~ 480 (523)
.++...++|++++.|++|||+.+|..+.-+.|++ +.++++-+.+
T Consensus 44 a~ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~ 88 (112)
T COG5439 44 ADPSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSK 88 (112)
T ss_pred cChHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCC
Confidence 3567899999999999999999999999999887 6788877754
No 43
>PRK11660 putative transporter; Provisional
Probab=84.32 E-value=24 Score=38.81 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhh-------cCC
Q 009895 200 LGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS-------AGC 272 (523)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~-------~Ga 272 (523)
+..=+..++.++++.+=+.++.+.. .| ..+...|++--++.++-++||+.+...+-..++.... .|-
T Consensus 29 l~~D~iAGltv~~~~iPq~mayA~l----ag--~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~~~~ 102 (568)
T PRK11660 29 FTRDLIAGITVGIIAIPLAMALAIA----SG--VPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL 102 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----cC--CChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHHhhH
Confidence 3334445667777877777776632 33 3444579999999999999999986543333222111 111
Q ss_pred C-cchhHHHHHHHHHHHHHH-HhhHhhhhhhHHHHHHHHHHhcc
Q 009895 273 Q-TVVSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSALPG 314 (523)
Q Consensus 273 ~-t~~s~i~~~~~~l~~~~~-~~~ll~~iP~~vla~ili~~~~~ 314 (523)
. .-.+++.+|++.+++.++ ++.+.++||.+++.|.+--+++-
T Consensus 103 ~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~ 146 (568)
T PRK11660 103 AGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIV 146 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHH
Confidence 1 123477788888887777 88899999999999877655553
No 44
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=80.19 E-value=29 Score=29.23 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=70.6
Q ss_pred CcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCC--ccChHHHHHHHHHHHHHHhCCCE
Q 009895 396 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSM--NIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 396 ~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~--~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
+++.++.+.+...--.+.++..+-+...-+ .+...+++|-+.++ |.|.+- +.--++.+++.+.+.+
T Consensus 4 ~~~~v~~~~s~~~~i~~~qdalDLi~~~~~-----------~~~~~i~l~~~~l~~dFF~L~T-glAGeiLQKf~NY~ik 71 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDEQDALDLIGTAYE-----------HGADRIILPKEALSEDFFDLRT-GLAGEILQKFVNYRIK 71 (113)
T ss_pred CCeEEEEEeCCCCeecchhHHHHHHHHHHH-----------cCCCEEEEEhHHCCHHHHHhhc-chHHHHHHHHHhhcee
Confidence 455555554332555566666665555422 45789999988775 555544 4556777888899999
Q ss_pred EEEEc------CCHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 474 LVMAS------PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 474 l~l~~------~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
+.+++ .+.+.++....++=.+.+ .+++|.+||++|+
T Consensus 72 lAivGD~s~~~~S~~l~dfi~EsN~G~~~---~F~~~~~eA~~~L 113 (113)
T PF13788_consen 72 LAIVGDFSAYATSKSLRDFIYESNRGNHF---FFVPDEEEAIAWL 113 (113)
T ss_pred EEEEEcccccccchhHHHHHHHhcCCCeE---EEECCHHHHHhhC
Confidence 99983 466778887777766666 7999999999873
No 45
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=73.58 E-value=48 Score=28.71 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=62.7
Q ss_pred CCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCC--
Q 009895 395 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGI-- 472 (523)
Q Consensus 395 ~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~-- 472 (523)
..+..++.+... .+.+++-+...+ .+.+.+.+ +.+|.+-.....++.++++++|.
T Consensus 28 ~~GfeVi~lg~~----~s~e~~v~aa~e--------------~~adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~ 84 (132)
T TIGR00640 28 DLGFDVDVGPLF----QTPEEIARQAVE--------------ADVHVVGV-----SSLAGGHLTLVPALRKELDKLGRPD 84 (132)
T ss_pred hCCcEEEECCCC----CCHHHHHHHHHH--------------cCCCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCC
Confidence 457777777765 555655555443 34566666 55667777788889999988753
Q ss_pred EEEEEc--CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 473 ELVMAS--PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 473 ~l~l~~--~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
-.++++ ..++-.+.++..|+.+.+++ =.+.++-++++.+
T Consensus 85 i~vivGG~~~~~~~~~l~~~Gvd~~~~~---gt~~~~i~~~l~~ 125 (132)
T TIGR00640 85 ILVVVGGVIPPQDFDELKEMGVAEIFGP---GTPIPESAIFLLK 125 (132)
T ss_pred CEEEEeCCCChHhHHHHHHCCCCEEECC---CCCHHHHHHHHHH
Confidence 235555 45666788999999988853 3366666666654
No 46
>PRK11778 putative inner membrane peptidase; Provisional
Probab=69.79 E-value=44 Score=33.87 Aligned_cols=70 Identities=14% Similarity=0.301 Sum_probs=48.6
Q ss_pred CCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCcc-ChHHHHHHHHHHHHHHhCCCE
Q 009895 395 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNI-DTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 395 ~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~i-Dssgl~~L~~~~~~~~~~g~~ 473 (523)
.+.+.+++++|. ++-.....+++.+...++... ++ +.|+|++..-... +.++ ......+++++.|..
T Consensus 89 ~~~v~VI~~~G~-I~~~~~~~l~e~i~a~l~~A~--------~~-~aVvLridSpGG~v~~s~--~a~~~l~~lr~~~kp 156 (330)
T PRK11778 89 KPRLFVLDFKGD-IDASEVESLREEITAILAVAK--------PG-DEVLLRLESPGGVVHGYG--LAASQLQRLRDAGIP 156 (330)
T ss_pred CCeEEEEEEEEE-ECCCcchhhHHHHHHHHHhcc--------CC-CeEEEEEeCCCCchhHHH--HHHHHHHHHHhcCCC
Confidence 468999999999 998888888888887665432 22 6899999665443 3333 333335667777777
Q ss_pred EEE
Q 009895 474 LVM 476 (523)
Q Consensus 474 l~l 476 (523)
++.
T Consensus 157 Vva 159 (330)
T PRK11778 157 LTV 159 (330)
T ss_pred EEE
Confidence 665
No 47
>PRK10444 UMP phosphatase; Provisional
Probab=69.62 E-value=13 Score=36.00 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=56.0
Q ss_pred eEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 440 QAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 440 ~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
+.+++|+.++=+-+..-..--.+..++++++|++++++.-+ .+..+.|+..|+. +++++++.+.+.+.+++++
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLRR 79 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEecHHHHHHHHHHh
Confidence 57899999988776555555567778899999999888754 3467778888883 4566788888888787765
Q ss_pred c
Q 009895 515 S 515 (523)
Q Consensus 515 ~ 515 (523)
+
T Consensus 80 ~ 80 (248)
T PRK10444 80 Q 80 (248)
T ss_pred C
Confidence 4
No 48
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=68.35 E-value=73 Score=26.96 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=59.2
Q ss_pred CcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhC---CC
Q 009895 396 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASN---GI 472 (523)
Q Consensus 396 ~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~---g~ 472 (523)
.+..++.+... -..+++.+...+ .+++.+.+-.+ |-.-...+.++.+.++++ ++
T Consensus 26 ~G~~vi~lG~~----vp~e~~~~~a~~--------------~~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i 82 (122)
T cd02071 26 AGFEVIYTGLR----QTPEEIVEAAIQ--------------EDVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDI 82 (122)
T ss_pred CCCEEEECCCC----CCHHHHHHHHHH--------------cCCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCC
Confidence 35666666555 334455554443 45677877554 455566678888888887 45
Q ss_pred EEEEEc-CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 473 ELVMAS-PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 473 ~l~l~~-~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.+.+.+ ..++..+.++..|+.+.++ -=.+.++.+++++
T Consensus 83 ~i~~GG~~~~~~~~~~~~~G~d~~~~---~~~~~~~~~~~~~ 121 (122)
T cd02071 83 LVVGGGIIPPEDYELLKEMGVAEIFG---PGTSIEEIIDKIR 121 (122)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEC---CCCCHHHHHHHHh
Confidence 555554 4555678899999988773 4456777777665
No 49
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=68.00 E-value=36 Score=35.65 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHh-hhhhHHhhhhHhHHHHHHHH
Q 009895 43 VTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAG 77 (523)
Q Consensus 43 ~~~l~G~~~~~lg~~-~lg~l~~~ip~~Vi~Gf~~g 77 (523)
....+|++.++++++ +++.+..++|.||++|.+..
T Consensus 297 ~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~ 332 (406)
T TIGR03173 297 VVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV 332 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 357888999898887 58999999999999995543
No 50
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=66.52 E-value=23 Score=31.71 Aligned_cols=45 Identities=11% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecC
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSN 448 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~ 448 (523)
+.+.+.+++++|+ +.-..++.+|+.+...+...+ ++ ..|++.++.
T Consensus 96 ~~~r~~VldF~Gd-i~A~~v~~LReeisail~~a~--------~~-DeV~~rLES 140 (155)
T PF08496_consen 96 PKPRLFVLDFKGD-IKASEVESLREEISAILSVAT--------PE-DEVLVRLES 140 (155)
T ss_pred CCCeEEEEecCCC-ccHHHHHHHHHHHHHHHHhCC--------CC-CeEEEEEec
Confidence 4688999999999 999999999999998887542 22 678887754
No 51
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=65.70 E-value=14 Score=35.87 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=53.4
Q ss_pred eEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc-----CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 440 QAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS-----PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 440 ~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
+.+++|+.++-+-+..-+.-=.+..++++++|++++++. ...++.+.++..|+. ..+++++.+...+.+++++
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~--~~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP--ATLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CChhhEeeHHHHHHHHHHh
Confidence 567888877765544333333577788899999999985 346678889999985 3456788888888787765
Q ss_pred c
Q 009895 515 S 515 (523)
Q Consensus 515 ~ 515 (523)
+
T Consensus 80 ~ 80 (249)
T TIGR01457 80 L 80 (249)
T ss_pred c
Confidence 4
No 52
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=64.94 E-value=39 Score=35.51 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHh-hhhhHHhhhhHhHHHHHHHHHHHHHHHhhhccc
Q 009895 43 VTFFAGVFQSVFGLF-RLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGL 90 (523)
Q Consensus 43 ~~~l~G~~~~~lg~~-~lg~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~ 90 (523)
+...+|++.++++++ |++.+...+|.||++|.....--.+..++++.+
T Consensus 313 ~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l 361 (415)
T TIGR00801 313 VIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRIL 361 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888898887 689999999999999988766556665555544
No 53
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=64.48 E-value=41 Score=31.49 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=49.2
Q ss_pred EEEEEECCCcee---EechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEE
Q 009895 398 ILTIRINSALFC---FANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIEL 474 (523)
Q Consensus 398 i~ii~l~G~~L~---f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l 474 (523)
+.+++++|. +. -....++.+.++++-+ +++.+.++++... ...|....+.+.+..+++++.+..+
T Consensus 2 v~vi~i~g~-i~~~~~~~~~~l~~~l~~a~~----------d~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGT-ISDGGGIGADSLIEQLRKARE----------DDSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEE-EcCCCCCCHHHHHHHHHHHHh----------CCCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 678999999 88 6677888888876433 3678999999865 4568777777777777777755444
Q ss_pred E
Q 009895 475 V 475 (523)
Q Consensus 475 ~ 475 (523)
+
T Consensus 70 i 70 (208)
T cd07023 70 V 70 (208)
T ss_pred E
Confidence 3
No 54
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=63.40 E-value=54 Score=34.63 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=45.6
Q ss_pred HHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhhHhhhhhh
Q 009895 241 AMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLYYTPI 301 (523)
Q Consensus 241 a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~~iP~ 301 (523)
.-=.++-+++.++|+.++...++++-|...+++||.++-.......+++. ++..+||
T Consensus 284 r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T~v~SR~v~~~a~~~li----llgl~Pk 340 (429)
T TIGR03616 284 RAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVTKVYSTLVFVAAAVFAI----LLGFSPK 340 (429)
T ss_pred cchhhhhHHHHHHHhcCCCCCcceeeeeeeeeecCcchHHHHHHHHHHHH----HHHHHHH
Confidence 34568889999999999999999999999999999999777665555543 4456775
No 55
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=63.38 E-value=14 Score=35.91 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=54.6
Q ss_pred eEEEEEecCCCccChH----HHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCccccCCcccccCHHHHHH
Q 009895 440 QAVIIDMSNSMNIDTS----GILVLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRIGKGCVYLSVAEAME 510 (523)
Q Consensus 440 ~~vIlD~s~v~~iDss----gl~~L~~~~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~s~~~Al~ 510 (523)
|.+++|+.++-+-+.. .+.-=.+..++++++|+++.++.-+ +++.+.++..|+. +.+++++.+-+.+.+
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~ts~~~~~~ 79 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFTPAPAARQ 79 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEcHHHHHHH
Confidence 5788999888665444 3444456667788999999888732 3578888999985 566789999888888
Q ss_pred HHhhc
Q 009895 511 ACLTS 515 (523)
Q Consensus 511 ~~~~~ 515 (523)
+++++
T Consensus 80 ~l~~~ 84 (257)
T TIGR01458 80 LLEEK 84 (257)
T ss_pred HHHhc
Confidence 88654
No 56
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=63.27 E-value=25 Score=36.18 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHh---hhhhHHh-hhhHhHHHHHHHHHHHHHHHhh
Q 009895 39 LVFTVTFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIGLQQ 86 (523)
Q Consensus 39 ~~~~~~~l~G~~~~~lg~~---~lg~l~~-~ip~~Vi~Gf~~gigl~i~~~q 86 (523)
.-...|+...++.+++|.+ |+..+.+ ++|.||++|++.++-.....+-
T Consensus 5 ~n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~ 56 (404)
T COG0786 5 LNALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGF 56 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhc
Confidence 3345677788888899976 2455555 8999999999999887776443
No 57
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=62.76 E-value=44 Score=31.31 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=44.0
Q ss_pred EEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHH
Q 009895 398 ILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLA 468 (523)
Q Consensus 398 i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~ 468 (523)
+.+++++|. +. .+.+++.+.++++-+ +++++.|+|+... ..-|.+...-+.+..++++
T Consensus 2 v~vi~i~g~-i~-~s~~~l~~~l~~a~~----------d~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGA-IA-VSPEDFDKKIKRIKD----------DKSIKALLLRINS-PGGTVVASEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEE-Ee-cCHHHHHHHHHHHhh----------CCCccEEEEEecC-CCCCHHHHHHHHHHHHHhc
Confidence 689999999 98 677888888876543 3678999999864 4457777777777777776
No 58
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=62.39 E-value=43 Score=31.48 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=45.2
Q ss_pred EEEEEECCCceeEech-------HHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhC
Q 009895 398 ILTIRINSALFCFANA-------NFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASN 470 (523)
Q Consensus 398 i~ii~l~G~~L~f~n~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~ 470 (523)
+.++.++|+ +.-.+. .++.+.++++-+ +++.+.++|+... ...|.+..+.+.+..+.+++.
T Consensus 2 i~v~~~~g~-i~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~ 69 (211)
T cd07019 2 IGVVFANGA-IVDGEETQGNVGGDTTAAQIRDARL----------DPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAA 69 (211)
T ss_pred EEEEEEEEE-EeCCCCCCCccCHHHHHHHHHHHhh----------CCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhC
Confidence 566677776 655543 455555554322 4678999998665 677888888777777788776
Q ss_pred CCEEEEE
Q 009895 471 GIELVMA 477 (523)
Q Consensus 471 g~~l~l~ 477 (523)
+..++-.
T Consensus 70 ~kpVia~ 76 (211)
T cd07019 70 GKPVVVS 76 (211)
T ss_pred CCCEEEE
Confidence 6555443
No 59
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=62.14 E-value=16 Score=35.99 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=55.7
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 439 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 439 ~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.+.+++|+.++=+-+...+.-..+..++++++|++++++.- ..+..+.|++.|+.. .+++++.+...+.++++
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~--~~~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNG--LAEQLFSSALCAARLLR 79 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--ChhhEecHHHHHHHHHH
Confidence 57899999998876666555567778888999999987754 234556788889853 34689999888888877
Q ss_pred h
Q 009895 514 T 514 (523)
Q Consensus 514 ~ 514 (523)
+
T Consensus 80 ~ 80 (279)
T TIGR01452 80 Q 80 (279)
T ss_pred h
Confidence 6
No 60
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=61.77 E-value=30 Score=34.23 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=63.8
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
....++.|+.+|-..-...+.--.+..+.+++.|.++.++.-+ ++-.+.+++.|+.. ++++++|.+-..+-.++
T Consensus 21 ~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ssa~~~a~yl 99 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSSAYAIADYL 99 (306)
T ss_pred hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccChHHHHHHHH
Confidence 4679999999998888888887888889999999888887643 45566788889865 77889999999888888
Q ss_pred hhcc
Q 009895 513 LTSK 516 (523)
Q Consensus 513 ~~~~ 516 (523)
+.++
T Consensus 100 k~~~ 103 (306)
T KOG2882|consen 100 KKRK 103 (306)
T ss_pred HHhC
Confidence 6655
No 61
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=60.75 E-value=29 Score=37.04 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=64.2
Q ss_pred cCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 436 KRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 436 ~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
..+++-||||=-+ +.+|+.|-.+|.+...+.|++|+.++++.-+|.+....++.=+.+ -|.-+.|...||-++....
T Consensus 488 YG~P~lvVLDEPN-sNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~-~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 488 YGDPFLVVLDEPN-SNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ-DGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred cCCCcEEEecCCC-CCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeec-CChHHhcCCHHHHHHHhcC
Confidence 3567899999544 679999999999999999999999999999999988877655543 2445789999999998864
No 62
>PLN02645 phosphoglycolate phosphatase
Probab=59.74 E-value=35 Score=34.28 Aligned_cols=75 Identities=20% Similarity=0.132 Sum_probs=54.4
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
+.+.+++|+.++=+-+..-+.--.+..++++++|++++++.-+ .++.+.|+..|+. ...+.++.+...+..+.
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~--~~~~~I~ts~~~~~~~l 104 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN--VTEEEIFSSSFAAAAYL 104 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC--CChhhEeehHHHHHHHH
Confidence 3689999999987776554555577888899999999888753 4456677888874 33457888877666666
Q ss_pred hh
Q 009895 513 LT 514 (523)
Q Consensus 513 ~~ 514 (523)
+.
T Consensus 105 ~~ 106 (311)
T PLN02645 105 KS 106 (311)
T ss_pred Hh
Confidence 54
No 63
>PRK10949 protease 4; Provisional
Probab=58.22 E-value=1.9e+02 Score=32.24 Aligned_cols=44 Identities=14% Similarity=0.329 Sum_probs=37.1
Q ss_pred ccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc
Q 009895 435 TKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS 478 (523)
Q Consensus 435 ~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 478 (523)
++++++.|+||++....-+.+.++-+.+..+++|+.|..++-.+
T Consensus 109 ~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~ 152 (618)
T PRK10949 109 DDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVG 152 (618)
T ss_pred cCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 35889999999999888888888999999999999888776543
No 64
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=57.97 E-value=2.1e+02 Score=29.77 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhcCCc-cC----CchhHHHHhHHHHHhhhcCCccCCCccchhhhhhh---cCCCc
Q 009895 203 TAKIGLISAVVALTEAIAVGRSFASIKGYH-LD----GNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFS---AGCQT 274 (523)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~---~Ga~t 274 (523)
.+..+++-.++++..+....-..++.-|-+ .+ ..--.++.|+++++=|+.--+|...+.|.-....- .+. -
T Consensus 23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~-~ 101 (395)
T TIGR00843 23 TLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG-I 101 (395)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC-C
Confidence 344556666677766655443333322211 11 12345788888888888889999888883322222 221 2
Q ss_pred chhH-----HHHHHHHHHHHH--HHhhHhhhhhhHHHHHHHH
Q 009895 275 VVSN-----IVMAITVLLSLE--LFTSLLYYTPIAILASIIL 309 (523)
Q Consensus 275 ~~s~-----i~~~~~~l~~~~--~~~~ll~~iP~~vla~ili 309 (523)
.++. +++|+++++..+ .+..+.+.||.++.++++.
T Consensus 102 ~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLA 143 (395)
T TIGR00843 102 SLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLA 143 (395)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 2433 444444444333 2677899999999999984
No 65
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=56.60 E-value=50 Score=31.10 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHh
Q 009895 412 NANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLAS 469 (523)
Q Consensus 412 n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~ 469 (523)
...++.+.++++-+ +++.+.|++++... .-|.++...+.+..+++++
T Consensus 26 ~~~~l~~~l~~a~~----------d~~i~~Vvl~~~s~-gg~~~~~~~l~~~l~~~~~ 72 (214)
T cd07022 26 SYEGIAAAIRAALA----------DPDVRAIVLDIDSP-GGEVAGVFELADAIRAARA 72 (214)
T ss_pred cHHHHHHHHHHHhh----------CCCCcEEEEEEeCC-CCcHHHHHHHHHHHHHHhc
Confidence 34566666665432 36789999998664 4577888878888888875
No 66
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=55.61 E-value=1.1e+02 Score=30.85 Aligned_cols=106 Identities=15% Similarity=0.064 Sum_probs=62.9
Q ss_pred CCCcEEEEEECCCce-------eEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHH
Q 009895 394 KTPGILTIRINSALF-------CFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKK 466 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L-------~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~ 466 (523)
.+|++..+..++. - .....+++|+-.+. +... +....+.|++| ...+.+|..+...|.+..++
T Consensus 70 ~HpD~~~~~p~~~-~~~~g~~~~~I~id~iR~l~~~-~~~~-------p~~~~~kV~ii-Ep~~~Ld~~a~naLLk~LEe 139 (325)
T PRK08699 70 SHPDFYEITPLSD-EPENGRKLLQIKIDAVREIIDN-VYLT-------SVRGGLRVILI-HPAESMNLQAANSLLKVLEE 139 (325)
T ss_pred CCCCEEEEecccc-cccccccCCCcCHHHHHHHHHH-HhhC-------cccCCceEEEE-echhhCCHHHHHHHHHHHHh
Confidence 4566666665431 0 11346677764433 2211 11344667776 99999999999999999999
Q ss_pred HHhCCCEEEEEcCCHH-HHHH-HHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 467 LASNGIELVMASPRWQ-VIHK-LKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 467 ~~~~g~~l~l~~~~~~-v~~~-l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
.. .+..++++.-+++ +... -.+..... + --++.+++.+|.+++
T Consensus 140 p~-~~~~~Ilvth~~~~ll~ti~SRc~~~~-~----~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 140 PP-PQVVFLLVSHAADKVLPTIKSRCRKMV-L----PAPSHEEALAYLRER 184 (325)
T ss_pred Cc-CCCEEEEEeCChHhChHHHHHHhhhhc-C----CCCCHHHHHHHHHhc
Confidence 85 4577777776543 3322 22232222 1 235677788888654
No 67
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=54.86 E-value=38 Score=32.49 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=50.3
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEE-cCCHH---HHHHHHHCCCcc-ccCCcccccCHHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMA-SPRWQ---VIHKLKSAKLLD-RIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~-~~~~~---v~~~l~~~gl~~-~~~~~~if~s~~~Al~~~ 512 (523)
+.+.+++|+.++-+-...-..--.+..++++++|+++.++ |-+.+ ..+.|+..|+.. .+. .++.+.+.+.+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~--~Ii~s~~~~~~~l 84 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPE--MIISSGEIAVQMI 84 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccc--eEEccHHHHHHHH
Confidence 4689999998877755555566677888899999999886 32222 226788999865 443 5677765544444
No 68
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=54.65 E-value=25 Score=36.66 Aligned_cols=40 Identities=15% Similarity=0.410 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHh---hhhhHHh-hhhHhHHHHHHHHHHHHHH
Q 009895 44 TFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVIG 83 (523)
Q Consensus 44 ~~l~G~~~~~lg~~---~lg~l~~-~ip~~Vi~Gf~~gigl~i~ 83 (523)
|+...++.+++|.. |+..+.| ++|.||++|++.++.+.+.
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 44445555666643 3566666 8999999999999877766
No 69
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=54.60 E-value=36 Score=33.47 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=63.0
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC----HH-HHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR----WQ-VIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~-v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
+.+.+++|+-+|-+-+...+.-=.+..+.++++|+++++..-+ ++ +.+.|+..+..+ ..++.++.|-+.+.+++
T Consensus 7 ~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~-~~~~~i~TS~~at~~~l 85 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVD-VTPDDIVTSGDATADYL 85 (269)
T ss_pred hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCC-CCHHHeecHHHHHHHHH
Confidence 4678999999999999999999999999999999999887643 33 677777745543 34558999998888888
Q ss_pred hhccc
Q 009895 513 LTSKF 517 (523)
Q Consensus 513 ~~~~~ 517 (523)
.+++.
T Consensus 86 ~~~~~ 90 (269)
T COG0647 86 AKQKP 90 (269)
T ss_pred HhhCC
Confidence 76543
No 70
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=54.36 E-value=1.4e+02 Score=25.93 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=58.0
Q ss_pred CcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhC---CC
Q 009895 396 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASN---GI 472 (523)
Q Consensus 396 ~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~---g~ 472 (523)
.+..++.+--. -..+++.+...+ .+++.|.+.+..- +....+.++.++++++ +.
T Consensus 30 ~G~eVi~LG~~----vp~e~i~~~a~~--------------~~~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~ 86 (137)
T PRK02261 30 AGFEVINLGVM----TSQEEFIDAAIE--------------TDADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDI 86 (137)
T ss_pred CCCEEEECCCC----CCHHHHHHHHHH--------------cCCCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCC
Confidence 35556655544 335555555543 4566777755443 3444455666666666 67
Q ss_pred EEEEEcCC-------HHHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 473 ELVMASPR-------WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 473 ~l~l~~~~-------~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
.+.+.+.. +..++.+++.|+...|++.. +.++.+++++.+
T Consensus 87 ~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~---~~~~i~~~l~~~ 133 (137)
T PRK02261 87 LLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT---DPEEAIDDLKKD 133 (137)
T ss_pred eEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHH
Confidence 77777753 56778999999876664322 778888887653
No 71
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=54.32 E-value=1.3e+02 Score=25.10 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=54.6
Q ss_pred CcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhC---CC
Q 009895 396 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASN---GI 472 (523)
Q Consensus 396 ~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~---g~ 472 (523)
.+..++.+... -..+++.+.+.+ .+++.+.+-.+.-... ..+.++.+++|++ +.
T Consensus 26 ~G~~V~~lg~~----~~~~~l~~~~~~--------------~~pdvV~iS~~~~~~~-----~~~~~~i~~l~~~~~~~~ 82 (119)
T cd02067 26 AGFEVIDLGVD----VPPEEIVEAAKE--------------EDADAIGLSGLLTTHM-----TLMKEVIEELKEAGLDDI 82 (119)
T ss_pred CCCEEEECCCC----CCHHHHHHHHHH--------------cCCCEEEEeccccccH-----HHHHHHHHHHHHcCCCCC
Confidence 35666666655 345556555543 4567888866544433 4445555555555 56
Q ss_pred EEEEEcCCHHH-HHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 473 ELVMASPRWQV-IHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 473 ~l~l~~~~~~v-~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.+++.+..... .+.++..|.+ .++.+-.+|++.+.
T Consensus 83 ~i~vGG~~~~~~~~~~~~~G~D------~~~~~~~~~~~~~~ 118 (119)
T cd02067 83 PVLVGGAIVTRDFKFLKEIGVD------AYFGPATEAVEVLK 118 (119)
T ss_pred eEEEECCCCChhHHHHHHcCCe------EEECCHHHHHHHHh
Confidence 77888875543 3577777774 35677778887765
No 72
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=54.05 E-value=34 Score=30.39 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=42.1
Q ss_pred EEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHH
Q 009895 400 TIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLA 468 (523)
Q Consensus 400 ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~ 468 (523)
+++++|+ ++-.+.+++.+.++++-+ +++.+.++++...- .-|.+....+.+..++++
T Consensus 1 vi~i~g~-I~~~~~~~l~~~l~~a~~----------d~~~~~ivl~~~s~-Gg~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGV-IEDVSADQLAAQIRFAEA----------DNSVKAIVLEVNTP-GGRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeE-EccchHHHHHHHHHHHHh----------CCCCceEEEEEECC-CcCHHHHHHHHHHHHHhC
Confidence 4789999 999999999999987533 25678999988653 347667666666666665
No 73
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=53.17 E-value=42 Score=33.34 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=47.9
Q ss_pred CCceEEEEEecCCCccChHHH----HHHHHHHHHHHhCCCEEEEEc--CCHHHHHHHHHCCCcccc
Q 009895 437 RTIQAVIIDMSNSMNIDTSGI----LVLEELHKKLASNGIELVMAS--PRWQVIHKLKSAKLLDRI 496 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl----~~L~~~~~~~~~~g~~l~l~~--~~~~v~~~l~~~gl~~~~ 496 (523)
+.++.+++|+.+.=.=|.--+ ....+..++++++|+.+.++. .++.+.+.++..|+.+.+
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 457899999988655554432 567788899999999999997 667889999999998655
No 74
>PRK09928 choline transport protein BetT; Provisional
Probab=52.50 E-value=1.4e+02 Score=33.44 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc
Q 009895 415 FIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS 478 (523)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 478 (523)
..|+|+.+.++.. ..+. --+|+|.++.-++.++.++++++|.+..+..
T Consensus 528 ~w~~RL~~~~~~p----------~~~~------~~~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 528 NWKQRLSRVMNYP----------GTRY------TRRMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred cHHHHHHHHhcCC----------CHHH------HHHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4888888876521 1111 1268999999999999999999999999875
No 75
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=52.27 E-value=1.8e+02 Score=30.19 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=44.4
Q ss_pred CchhHHHHhHHHHHhhh-cC-CccCCCccchhhhh---hhcC----CCcchhHH-----HHHHHHHHHHHHHh--hHhhh
Q 009895 235 GNKEMVAMGFMNIVGSL-TS-CYVATGSFSRTAVN---FSAG----CQTVVSNI-----VMAITVLLSLELFT--SLLYY 298 (523)
Q Consensus 235 ~n~el~a~G~aNivs~l-fG-g~p~~~~~s~s~~~---~~~G----a~t~~s~i-----~~~~~~l~~~~~~~--~ll~~ 298 (523)
....+++.|+++++=++ +| .+|...+.+-.... .-.| .+..+..+ +.+++.+++.+... .+..+
T Consensus 39 i~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~ 118 (389)
T PF00860_consen 39 ISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRL 118 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHH
Confidence 35677888999999888 54 34444333333332 2223 13333333 33333333333333 67789
Q ss_pred hhhHHHHHHHHHHhcccC
Q 009895 299 TPIAILASIILSALPGLI 316 (523)
Q Consensus 299 iP~~vla~ili~~~~~l~ 316 (523)
+|..+.+++++.+|+.+.
T Consensus 119 ~pp~v~g~v~~~IGl~L~ 136 (389)
T PF00860_consen 119 FPPVVKGAVVLLIGLSLA 136 (389)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred hChhheEeeEeeehhhhh
Confidence 999999999999998875
No 76
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=52.01 E-value=52 Score=30.90 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=43.0
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-C-H-HHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-R-W-QVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~-~-~-~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
++..+++|+..+..=|-.|++.+.++.+... +.++++... . + .+.+.+...|....+.+..=.+..-+|++.+
T Consensus 37 ~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v 112 (207)
T PRK11475 37 SFSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLS 112 (207)
T ss_pred CCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 4578888888876666779988888765432 455554443 2 2 2445555667666555433333444455443
No 77
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=43.21 E-value=59 Score=30.19 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=42.0
Q ss_pred hhhhhHHHHHHHHHHhcccC-CHHHHHhhhhcCchhHHHHHHHHHHHHHHhhhHHHHH
Q 009895 297 YYTPIAILASIILSALPGLI-DINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLA 353 (523)
Q Consensus 297 ~~iP~~vla~ili~~~~~l~-~~~~~~~~~~~~~~d~~v~~~t~~~~~~~~~~~gi~~ 353 (523)
..+...+|=.+++.+|+++= |...++++++.++.-..+-+.+.+.++..+...+...
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777889999999999985 6677888888888777777777666665554444433
No 78
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=43.03 E-value=81 Score=23.15 Aligned_cols=18 Identities=11% Similarity=0.484 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHhhc
Q 009895 153 APLLSVILSTLIVYLTKA 170 (523)
Q Consensus 153 ~~li~vv~~~~~~~~~~~ 170 (523)
..-+++++|.+++|+.|.
T Consensus 41 GSAIAI~lGLvLAy~GG~ 58 (60)
T PF03818_consen 41 GSAIAIVLGLVLAYIGGV 58 (60)
T ss_pred hHHHHHHHHHHHHHHccc
Confidence 788899999999998653
No 79
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=41.91 E-value=1.7e+02 Score=23.22 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIG 497 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~ 497 (523)
..+..+++|.+. -|-+|.+.+.++.+.. .+..+++...+ +.........|..+.+.
T Consensus 42 ~~~d~iiid~~~---~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 99 (112)
T PF00072_consen 42 HPPDLIIIDLEL---PDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAGADDYLS 99 (112)
T ss_dssp STESEEEEESSS---SSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTTESEEEE
T ss_pred cCceEEEEEeee---cccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 457899999644 3467888888886555 56677666643 44555556888877663
No 80
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=41.26 E-value=54 Score=33.87 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHh---hhhhHHh-hhhHhHHHHHHHHHHHHH
Q 009895 44 TFFAGVFQSVFGLF---RLGFLVD-FLSHAAIVGFMAGAAIVI 82 (523)
Q Consensus 44 ~~l~G~~~~~lg~~---~lg~l~~-~ip~~Vi~Gf~~gigl~i 82 (523)
++....+++++|.+ |+..+.| ++|.||++|++..+-..+
T Consensus 8 tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~ 50 (368)
T PF03616_consen 8 TLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLI 50 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHH
Confidence 44445556666644 3566666 999999999997665433
No 81
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=40.78 E-value=93 Score=30.27 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=41.7
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW-QVIHKLK 488 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~-~v~~~l~ 488 (523)
.+++-+++| +..+.+|..+...+.++.++++++|..++++.-.- .+.+..+
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFD 207 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCC
Confidence 456788888 78899999999999999999999999998887653 3444343
No 82
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=39.64 E-value=1e+02 Score=29.18 Aligned_cols=54 Identities=9% Similarity=0.213 Sum_probs=40.2
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV 475 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~ 475 (523)
.+..++.+.++++-+ +++++.|+|+...-.+ +.+.++.+.+..+++++.+..++
T Consensus 29 ~~~~~l~~~l~~a~~----------d~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVi 82 (222)
T cd07018 29 LSLRDLLEALEKAAE----------DDRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVI 82 (222)
T ss_pred ccHHHHHHHHHHHhc----------CCCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEE
Confidence 345556666655432 4679999999988777 88889999998888887666654
No 83
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=38.65 E-value=81 Score=33.05 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=51.4
Q ss_pred CcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 009895 396 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV 475 (523)
Q Consensus 396 ~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~ 475 (523)
+.+.+++++|. ++=++++++++.++++-+ ++...+|+++.-=...+.+..+ +.+...+..+.+.
T Consensus 26 ~~v~vi~i~g~-I~~~s~~~l~r~l~~A~~-----------~~a~~vvl~ldTPGGl~~sm~~----iv~~i~~s~vPV~ 89 (436)
T COG1030 26 KKVYVIEIDGA-IDPASADYLQRALQSAEE-----------ENAAAVVLELDTPGGLLDSMRQ----IVRAILNSPVPVI 89 (436)
T ss_pred CeEEEEEecCc-cCHHHHHHHHHHHHHHHh-----------CCCcEEEEEecCCCchHHHHHH----HHHHHHcCCCCEE
Confidence 46899999999 999999999999987544 4568999999888887766654 5566677777744
Q ss_pred EE
Q 009895 476 MA 477 (523)
Q Consensus 476 l~ 477 (523)
..
T Consensus 90 ~y 91 (436)
T COG1030 90 GY 91 (436)
T ss_pred EE
Confidence 43
No 84
>PRK10949 protease 4; Provisional
Probab=38.45 E-value=1.8e+02 Score=32.36 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=54.0
Q ss_pred CCCcEEEEEECCCceeEe-------chHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHH
Q 009895 394 KTPGILTIRINSALFCFA-------NANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKK 466 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~-------n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~ 466 (523)
..+.+.++.++|. +.-+ +.+.+.+.++++.+ +++.|.|+|+...-. -+.++.+.+.+..++
T Consensus 324 ~~~~Iavi~~~G~-I~~g~~~~g~~~~~~~~~~l~~a~~----------D~~vkaVvLrInSpG-Gs~~ase~i~~~i~~ 391 (618)
T PRK10949 324 TGGSIAVIFANGA-IMDGEETPGNVGGDTTAAQIRDARL----------DPKVKAIVLRVNSPG-GSVTASEVIRAELAA 391 (618)
T ss_pred CCCeEEEEEEEEE-EcCCCCcCCCcCHHHHHHHHHHHHh----------CCCCcEEEEEecCCC-CcHHHHHHHHHHHHH
Confidence 3568999999999 8643 34456666666443 477999999997544 578888999999999
Q ss_pred HHhCCCEEEE
Q 009895 467 LASNGIELVM 476 (523)
Q Consensus 467 ~~~~g~~l~l 476 (523)
+|+.|..++.
T Consensus 392 ~r~~gKPVva 401 (618)
T PRK10949 392 ARAAGKPVVV 401 (618)
T ss_pred HHhcCCcEEE
Confidence 9988877765
No 85
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=38.41 E-value=1.5e+02 Score=28.79 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=49.3
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHH
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV-MASPRWQVIHKLKS 489 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~-l~~~~~~v~~~l~~ 489 (523)
.+.+.+.+.+.+.+++.. +.-....+|||++.+..-.. . .-|..+.+.++++|...+ +.+.+++.++.-..
T Consensus 28 ~d~~~l~~~L~~ki~~aP------~FF~~~PvVlDl~~l~~~~~-~-~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~~ 99 (248)
T PRK04596 28 LDVPRLVQEMRERVTRAP------KLFGRAAVILDFGGLSQVPD-L-ATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQ 99 (248)
T ss_pred CCHHHHHHHHHHHHHhCh------HhhCCCcEEEEchhhcCccc-c-ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 457788888888776542 22345689999999863110 0 125557778888886554 66667777677666
Q ss_pred CCCc
Q 009895 490 AKLL 493 (523)
Q Consensus 490 ~gl~ 493 (523)
.|+.
T Consensus 100 ~gL~ 103 (248)
T PRK04596 100 LGLP 103 (248)
T ss_pred CCCC
Confidence 7764
No 86
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.26 E-value=55 Score=26.41 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=11.4
Q ss_pred cccccccchhhHHHHHHHHHHHH
Q 009895 145 KLFWLPAIAPLLSVILSTLIVYL 167 (523)
Q Consensus 145 ~~~~~p~~~~li~vv~~~~~~~~ 167 (523)
+.+|+|..+.++++++|.+.+++
T Consensus 32 ~~K~iPlIs~viGilLG~~~~~~ 54 (93)
T PF06946_consen 32 PNKWIPLISVVIGILLGAAAYPL 54 (93)
T ss_pred CcchhhHHHHHHHHHHHHHhhhc
Confidence 34577754444444444444333
No 87
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=37.30 E-value=1.3e+02 Score=25.69 Aligned_cols=54 Identities=26% Similarity=0.373 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhcccc
Q 009895 462 ELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFA 518 (523)
Q Consensus 462 ~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~~ 518 (523)
.+.+.++++|+++++|.- -+.-...|+..|+.-...+. .+++||++.+..-+.+
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~g~l~ 110 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLEGELE 110 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhcCCcc
Confidence 345778899999999875 78899999999996554432 8999999998765543
No 88
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=37.26 E-value=3.6e+02 Score=29.83 Aligned_cols=62 Identities=6% Similarity=0.053 Sum_probs=35.8
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.+.+.+++|-+. +..+++++.|.+++.-+.. -.+.|+..|..+---=--..+|.++.+..++
T Consensus 422 ~g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat--~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~ 483 (601)
T PRK03659 422 NKMRITVLERDI-------------SAVNLMRKYGYKVYYGDAT--QLELLRAAGAEKAEAIVITCNEPEDTMKIVE 483 (601)
T ss_pred CCCCEEEEECCH-------------HHHHHHHhCCCeEEEeeCC--CHHHHHhcCCccCCEEEEEeCCHHHHHHHHH
Confidence 346789999643 2345566778887777654 3567777777652100024455555555443
No 89
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=36.96 E-value=1.8e+02 Score=30.71 Aligned_cols=87 Identities=13% Similarity=0.146 Sum_probs=55.4
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEe-cCCCccChHHHHHHHHHHHHHH-hCCCEEEEEcCC-HHHHHHH
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDM-SNSMNIDTSGILVLEELHKKLA-SNGIELVMASPR-WQVIHKL 487 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~-s~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~-~~v~~~l 487 (523)
++.+++++.++-.+. +++.|.+.++. .+.+..|--+- .+.+..++.. +.-+-+.+.+.+ ++-+++|
T Consensus 328 a~~~~v~~a~~ii~~----------d~~vk~iliNIfGGI~~cd~iA~-gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l 396 (422)
T PLN00124 328 ASEQQVVEAFKILTS----------DDKVKAILVNIFGGIMKCDVIAS-GIVNAAKQVGLKVPLVVRLEGTNVDQGKRIL 396 (422)
T ss_pred CCHHHHHHHHHHHhc----------CCCCcEEEEEecCCccchHHHHH-HHHHHHHhcCCCCcEEEEcCCCCHHHHHHHH
Confidence 555666666654333 36788998885 78888888874 4444444442 122444555555 3468888
Q ss_pred HHCCCccccCCcccccCHHHHHHHHh
Q 009895 488 KSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 488 ~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
+.+|+ +. ..++|.+||.+.+-
T Consensus 397 ~~~~~-~~----~~~~~l~~A~~~~v 417 (422)
T PLN00124 397 KESGM-TL----ITAEDLDDAAEKAV 417 (422)
T ss_pred HhCCC-Ce----EEcCCHHHHHHHHH
Confidence 88887 22 47999999987653
No 90
>PRK01973 septum formation inhibitor; Reviewed
Probab=36.53 E-value=1.7e+02 Score=28.75 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=49.0
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHC
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLKSA 490 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~ 490 (523)
.+.+.+++.+.+.+++.. +.-+...+|||++++..-+. + -|..+.+.++++|...+=+..+++.++.-...
T Consensus 26 ~d~~~l~~~L~~ki~~aP------~FF~~aPvVlDl~~l~~~~~--~-dl~~L~~~lr~~gl~~VGV~g~~~~~~~a~~~ 96 (271)
T PRK01973 26 ADLDALRAELVKRFEATP------EFFADDVVAIDVRRLADDER--V-PLDDIRQMLNDVRMRPIGVVAQPAQQGWAGEA 96 (271)
T ss_pred CCHHHHHHHHHHHHHhCh------HhhcCCCEEEEchHhCCCcc--c-CHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 457778888888776432 12234689999999975331 1 26667788888887766655566666666666
Q ss_pred CCc
Q 009895 491 KLL 493 (523)
Q Consensus 491 gl~ 493 (523)
|+.
T Consensus 97 gL~ 99 (271)
T PRK01973 97 GLP 99 (271)
T ss_pred CCC
Confidence 763
No 91
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=34.76 E-value=1.4e+02 Score=33.01 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=37.0
Q ss_pred cCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc
Q 009895 436 KRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS 478 (523)
Q Consensus 436 ~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 478 (523)
+++++.|+||++....-+.+.++.+.+..+++|+.|..++-.+
T Consensus 91 D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~ 133 (584)
T TIGR00705 91 DRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYG 133 (584)
T ss_pred CCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5789999999998888888999999999999998887776544
No 92
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=34.47 E-value=95 Score=35.90 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhh---h-----hhhcC---
Q 009895 203 TAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTA---V-----NFSAG--- 271 (523)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~---~-----~~~~G--- 271 (523)
.+...+-+.+-++.-.++.+.-++++++..+..+.-+++.+++.++=|+|||-|-+ ..+-|+ + ..-+.
T Consensus 371 ~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~-IlG~TGPilvF~~~ly~~c~~~~ 449 (900)
T TIGR00834 371 CLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLL-VVGFSGPLLVFEEAFFSFCESNG 449 (900)
T ss_pred hHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceE-EecCcccHHHHHHHHHHHHhhcC
Confidence 33333444444444455555556777888899999999999999999999999976 333222 1 11111
Q ss_pred ----CCcchhHHHHHHHHHHHHHH-HhhHhhhhhhH
Q 009895 272 ----CQTVVSNIVMAITVLLSLEL-FTSLLYYTPIA 302 (523)
Q Consensus 272 ----a~t~~s~i~~~~~~l~~~~~-~~~ll~~iP~~ 302 (523)
.---|.|++++++++++..+ ...++.|+=..
T Consensus 450 ~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRF 485 (900)
T TIGR00834 450 LEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRF 485 (900)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 11247888999888888776 44566666553
No 93
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.32 E-value=1.1e+02 Score=26.75 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHhCCC--EEEEEcCC-----HH---HHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 454 TSGILVLEELHKKLASNGI--ELVMASPR-----WQ---VIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 454 ssgl~~L~~~~~~~~~~g~--~l~l~~~~-----~~---v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
.+....+.++.++++++|. ..++++-. ++ +++.|++.|+...|++.. +.++.+++++.
T Consensus 63 ~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~iv~~l~~ 130 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVVIADLKK 130 (134)
T ss_pred ccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHH
Confidence 4556667788888888763 44555553 22 456799999877665432 67888888764
No 94
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=33.88 E-value=4.9e+02 Score=25.98 Aligned_cols=28 Identities=14% Similarity=0.391 Sum_probs=24.0
Q ss_pred EEEEECCCceeEechHHHHHHHHHHHHhh
Q 009895 399 LTIRINSALFCFANANFIRERIMRWVTEE 427 (523)
Q Consensus 399 ~ii~l~G~~L~f~n~~~~~~~l~~~~~~~ 427 (523)
..+.+++. +...++.++.+++++.+++.
T Consensus 249 ~~i~v~~~-ls~~eah~I~~~ie~~i~~~ 276 (304)
T COG0053 249 VHIEVDPD-LSLEEAHEIADEVEKRIKKE 276 (304)
T ss_pred EEEEECCC-CChHHHHHHHHHHHHHHHHh
Confidence 45778999 99999999999999988754
No 95
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=33.73 E-value=2.3e+02 Score=28.66 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=60.9
Q ss_pred cCCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCC
Q 009895 393 IKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGI 472 (523)
Q Consensus 393 ~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~ 472 (523)
..+|++..+..++. =.-...+++|+-..+.-. . +...+.|.+|| .+.+.++..+..+|.+..++-.+ +.
T Consensus 69 g~HPD~~~i~~~~~-~~~i~id~iR~l~~~~~~-~------~~~~~~kv~iI--~~a~~m~~~aaNaLLK~LEEPp~-~~ 137 (328)
T PRK05707 69 GSHPDNFVLEPEEA-DKTIKVDQVRELVSFVVQ-T------AQLGGRKVVLI--EPAEAMNRNAANALLKSLEEPSG-DT 137 (328)
T ss_pred CCCCCEEEEeccCC-CCCCCHHHHHHHHHHHhh-c------cccCCCeEEEE--CChhhCCHHHHHHHHHHHhCCCC-Ce
Confidence 34567888877653 222456777765443222 1 11244566665 78899999999999998888654 45
Q ss_pred EEEEEcCCH-HHH-HHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 473 ELVMASPRW-QVI-HKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 473 ~l~l~~~~~-~v~-~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
.++++.-++ .+. .+..+...... --++.+++.+|+++
T Consensus 138 ~fiL~t~~~~~ll~TI~SRc~~~~~-----~~~~~~~~~~~L~~ 176 (328)
T PRK05707 138 VLLLISHQPSRLLPTIKSRCQQQAC-----PLPSNEESLQWLQQ 176 (328)
T ss_pred EEEEEECChhhCcHHHHhhceeeeC-----CCcCHHHHHHHHHH
Confidence 555555443 333 22333333321 12456677777654
No 96
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=33.60 E-value=2.2e+02 Score=31.45 Aligned_cols=71 Identities=7% Similarity=0.114 Sum_probs=50.2
Q ss_pred CCCcEEEEEECCCceeEe-------chHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHH
Q 009895 394 KTPGILTIRINSALFCFA-------NANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKK 466 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~-------n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~ 466 (523)
..+++.++.++|+ +.-+ ..+.+.+.++++-+ +++.+.|+|+...-.. +..+.+.+.+..++
T Consensus 306 ~~~~vavI~~~G~-I~~~~~~~~~~~~~~~~~~l~~a~~----------D~~VkaIVLrinSpGG-s~~ase~i~~~i~~ 373 (584)
T TIGR00705 306 VQDKIGIVHLEGP-IADGRDTEGNTGGDTVAALLRVARS----------DPDIKAVVLRINSPGG-SVFASEIIRRELAR 373 (584)
T ss_pred CCCeEEEEEEEEE-EcCCCCcccccCHHHHHHHHHHHhh----------CCCceEEEEEecCCCC-CHHHHHHHHHHHHH
Confidence 4578999999999 8642 23455555554322 4678999999876543 66777888888888
Q ss_pred HHhCCCEEEE
Q 009895 467 LASNGIELVM 476 (523)
Q Consensus 467 ~~~~g~~l~l 476 (523)
+++.|..++.
T Consensus 374 ~~~~gKPVva 383 (584)
T TIGR00705 374 AQARGKPVIV 383 (584)
T ss_pred HHhCCCcEEE
Confidence 8888766654
No 97
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=33.47 E-value=81 Score=30.14 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=46.4
Q ss_pred EEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc-----CCHHHHHHHHH-CCCccccCCcccccCHHHHHHHHhhc
Q 009895 443 IIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS-----PRWQVIHKLKS-AKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 443 IlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~-~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
++|+.++-+-+...+.-=.+..+.++++|.++.+.. ...+..+.|+. .|+. +.+++++.+...+.++++++
T Consensus 2 lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~--~~~~~iits~~~~~~~l~~~ 78 (236)
T TIGR01460 2 LFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD--VSPDQIITSGSVTKDLLRQR 78 (236)
T ss_pred EEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC--CCHHHeeeHHHHHHHHHHHh
Confidence 556666554444333333466677788999998884 23456667777 6663 45568888888888888753
No 98
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=33.39 E-value=1e+02 Score=28.13 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=34.5
Q ss_pred EEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHH
Q 009895 398 ILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSG 456 (523)
Q Consensus 398 i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssg 456 (523)
+.+++++|. ++....+++++.++++.+ .+.+.+++++..-...-.++
T Consensus 1 v~vi~i~g~-I~~~~~~~l~~~l~~a~~-----------~~~~~ivl~inspGG~v~~~ 47 (178)
T cd07021 1 VYVIPIEGE-IDPGLAAFVERALKEAKE-----------EGADAVVLDIDTPGGRVDSA 47 (178)
T ss_pred CEEEEEeeE-ECHHHHHHHHHHHHHHHh-----------CCCCeEEEEEECcCCCHHHH
Confidence 368899999 998888888888877544 23689999996655553333
No 99
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=32.65 E-value=8.2e+02 Score=28.16 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=28.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHH
Q 009895 118 WYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVY 166 (523)
Q Consensus 118 ~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~ 166 (523)
.|...+++|...+++.++...+++|.+ +| .+++.+++|.+++-
T Consensus 11 ~~l~~~~lG~~lll~~l~s~~lkeRl~----Ls--~~~v~Ll~GiilGP 53 (810)
T TIGR00844 11 AHVAYSCVGIFSSIFSLVSLFVKEKLY----IG--ESMVASIFGLIVGP 53 (810)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcC----Cc--HHHHHHHHHHHhhh
Confidence 556677777777776666665554543 33 67777777777654
No 100
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=32.61 E-value=1.3e+02 Score=30.07 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=43.5
Q ss_pred CCceEEEEEecCCCccChHHH----HHHHHHHHHHHhCCCEEEEEc--CCHHHHHHHHHCCCcccc
Q 009895 437 RTIQAVIIDMSNSMNIDTSGI----LVLEELHKKLASNGIELVMAS--PRWQVIHKLKSAKLLDRI 496 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl----~~L~~~~~~~~~~g~~l~l~~--~~~~v~~~l~~~gl~~~~ 496 (523)
+.++.+++|+.+.-.=|---+ ....+..++++++|+.+.++. .++.+.+.++..|+.+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 456789999977443332222 345567788889999999985 578899999999997654
No 101
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.49 E-value=2.2e+02 Score=24.33 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhccc
Q 009895 453 DTSGILVLEELHKKLASN--GIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKF 517 (523)
Q Consensus 453 Dssgl~~L~~~~~~~~~~--g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~ 517 (523)
|..+...+..+.++++++ +..+..+=.+.-+++.++..|+ -.|+.+||++.+.++.-
T Consensus 12 ~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~--------~~p~~~eaL~~l~~~G~ 70 (127)
T cd03412 12 YPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGI--------EVDTPEEALAKLAADGY 70 (127)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCC--------CCCCHHHHHHHHHHCCC
Confidence 336777888888888766 4588888888889999987753 36889999998876643
No 102
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=31.38 E-value=6.1e+02 Score=26.26 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhcC-CccCCchh----HHHHhHHHHHhhhcCCccCCCccchhhhhhhcCC--Ccc
Q 009895 203 TAKIGLISAVVALTEAIAVGRSFASIKG-YHLDGNKE----MVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGC--QTV 275 (523)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~n~e----l~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga--~t~ 275 (523)
.+..+++-.++++..+....-..++.-| .+-+...- .++.|+.++.-|+--=+|.....|.-....-.++ .-.
T Consensus 7 ~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~~~~~~~~ 86 (378)
T PF03594_consen 7 AVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLATSLPGYS 86 (378)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHHHhccCCC
Confidence 3444555566666655544433333222 11112222 3566778888888888899888887666544322 334
Q ss_pred hhHHHH-----HHHHHHHHHH--HhhHhhhhhhHHHHHHHH
Q 009895 276 VSNIVM-----AITVLLSLEL--FTSLLYYTPIAILASIIL 309 (523)
Q Consensus 276 ~s~i~~-----~~~~l~~~~~--~~~ll~~iP~~vla~ili 309 (523)
+.-.+. ++++++..+. +..++++||.++..+++-
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLA 127 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLA 127 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 443333 3333333332 678999999987666544
No 103
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=29.87 E-value=2.6e+02 Score=22.53 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=34.4
Q ss_pred HhhHhhhhhhHHHHHHHHHHhcccCCHHHHHhhhhcCchhHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 009895 292 FTSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFLGVLFA-SVEIGLLAAVTISF 359 (523)
Q Consensus 292 ~~~ll~~iP~~vla~ili~~~~~l~~~~~~~~~~~~~~~d~~v~~~t~~~~~~~-~~~~gi~~Gi~~s~ 359 (523)
...+++++|.++++++++...+.--+..+. ..+..+..-.+++++..... ++...++.|++...
T Consensus 32 ~~~~l~~vp~avl~aLv~~~i~~~~~~~~~----~~~~~~l~a~~~~~~~~~~~~~~~~~v~~G~~~~~ 96 (99)
T PF05437_consen 32 VRRFLRYVPPAVLAALVVPSIFFPTGSLEL----SLGNPYLIAALVAALVALRTRNLLLSVLAGVAAFA 96 (99)
T ss_pred HHHHHHHhHHHHHHHHHHHHHccCcccccc----ccchHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 345899999999999988755432111000 01122233333333333332 57777777776543
No 104
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=29.63 E-value=2.5e+02 Score=27.04 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=48.8
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHH
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV-MASPRWQVIHKLKS 489 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~-l~~~~~~v~~~l~~ 489 (523)
.+.+.+++.+.+.+++.. + -+...+|||++.+..-+. --|..+.+.++++|..++ +.+.+++.+.....
T Consensus 25 ~d~~~l~~~L~~ki~qaP------~-f~~aPvVldl~~l~~~~~---~dl~~L~~~l~~~gl~~vGv~g~~~~~~~~a~~ 94 (235)
T PRK04516 25 SDLFDLEDVLVKLGKKFQ------E-SGVVPFVLDVQEFDYPES---LDLAALVSLFSRHGMQILGLKHSNERWAAVAMK 94 (235)
T ss_pred CCHHHHHHHHHHHHHhCc------C-CCCCcEEEEchhhCCccc---ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHhh
Confidence 457788888888776532 1 233589999999975332 126667788889886654 55566666666666
Q ss_pred CCCc
Q 009895 490 AKLL 493 (523)
Q Consensus 490 ~gl~ 493 (523)
.|+.
T Consensus 95 ~gL~ 98 (235)
T PRK04516 95 YHLL 98 (235)
T ss_pred CCCc
Confidence 6764
No 105
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=29.41 E-value=2.3e+02 Score=25.71 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=55.3
Q ss_pred CCceEEEEEecC--CCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcc-cccCHHHHHHH
Q 009895 437 RTIQAVIIDMSN--SMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGC-VYLSVAEAMEA 511 (523)
Q Consensus 437 ~~~~~vIlD~s~--v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~-if~s~~~Al~~ 511 (523)
.+.+.+++|+.+ |..=+..+..-+.+...++++.|+++++++-+ ..|....++.|+.-+.+..+ +=.....|++.
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~ 105 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKE 105 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHH
Confidence 578999999965 66667788889999999999999999988765 35677788887765443222 22234555555
Q ss_pred Hh
Q 009895 512 CL 513 (523)
Q Consensus 512 ~~ 513 (523)
.+
T Consensus 106 m~ 107 (175)
T COG2179 106 MN 107 (175)
T ss_pred cC
Confidence 44
No 106
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=29.24 E-value=1.5e+02 Score=32.90 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=57.7
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW--QVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
.+++.+++| +..+.+|+.....+.+..+++.++|.+++++.-++ ++.+.+++.-+.+. |+...+.+.+|++++.++
T Consensus 183 ~~p~vlllD-EPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 183 TDPPLLFCD-EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred cCCCEEEee-CCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHHH
Confidence 345778888 77899999999999999999988888887776664 46778877666542 444556667777777665
Q ss_pred c
Q 009895 515 S 515 (523)
Q Consensus 515 ~ 515 (523)
.
T Consensus 261 ~ 261 (617)
T TIGR00955 261 L 261 (617)
T ss_pred c
Confidence 3
No 107
>PTZ00445 p36-lilke protein; Provisional
Probab=28.83 E-value=1.1e+02 Score=28.79 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=39.0
Q ss_pred CCceEEEEEecC--CC-----ccChH---------HHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Q 009895 437 RTIQAVIIDMSN--SM-----NIDTS---------GILVLEELHKKLASNGIELVMASPRWQVI 484 (523)
Q Consensus 437 ~~~~~vIlD~s~--v~-----~iDss---------gl~~L~~~~~~~~~~g~~l~l~~~~~~v~ 484 (523)
.++|.|+.|+.. +. +.|-. +-..+..+.+++++.|+++.++--+++..
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 578999999955 44 55554 56678999999999999999999988744
No 108
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.82 E-value=1.1e+02 Score=29.57 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=46.3
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHhCC-CEEEEEcCCHH--HHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 439 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNG-IELVMASPRWQ--VIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 439 ~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g-~~l~l~~~~~~--v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
++.|.++=+.=..|.+.+ +.+|+-| -++++++++.. -...-..+|=.+++.+.++|+|++||++.|.
T Consensus 5 i~iVLVep~~~gNIG~vA--------RaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~ 74 (242)
T COG0565 5 IRIVLVEPSHPGNIGSVA--------RAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCD 74 (242)
T ss_pred cEEEEEcCCCCccHHHHH--------HHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcCCC
Confidence 455555555555544443 6777777 57999999773 4444455677777878899999999998663
No 109
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=28.45 E-value=1.9e+02 Score=27.52 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCe----eEeecc--CC--CCCCCCCCCCCCchh
Q 009895 127 CSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGV----KIVKHI--KG--GLNPSSAHQLQLTGP 198 (523)
Q Consensus 127 ~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~----~~~g~i--p~--~~p~~~~~~~~~~~~ 198 (523)
+++++...+.+++.||+++.+..| .+++.++...+-..+|.+-.+. +...+. |. .+-.|-..+++.-.+
T Consensus 12 ~lTl~~y~~a~~l~~r~~~~~l~P---lLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq~~~ik~ 88 (230)
T COG1346 12 LLTLLAYFAAKRLYKRTKSPFLNP---LLVATVLLIAFLLLFGISYEDYMKGGQWINFLLGPATVALAVPLYKQRHLIKR 88 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCcccch---HHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445666667777888877644333 4555554444444444211111 101000 00 010111112222224
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 009895 199 HLGQTAKIGLISAVVALTEAIAVGRSF 225 (523)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (523)
+|.+.+...++-+++++......++.+
T Consensus 89 ~w~~I~~g~~vGs~~ai~s~~llak~~ 115 (230)
T COG1346 89 HWKPILAGVLVGSVVAIISGVLLAKLF 115 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666666666666554
No 110
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=28.39 E-value=2.9e+02 Score=26.50 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=53.2
Q ss_pred ECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHH-----H-------------------
Q 009895 403 INSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGI-----L------------------- 458 (523)
Q Consensus 403 l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl-----~------------------- 458 (523)
-+-+ +.+-+++++++.+.. .++-.|++|+.+. -+||+.. .
T Consensus 42 ~~~~-~~~~~~~~~~~~~~~--------------~~p~aViFDlDgT-LlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~ 105 (237)
T TIGR01672 42 EQAP-IHWISVAQIENSLEG--------------RPPIAVSFDIDDT-VLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKV 105 (237)
T ss_pred ccCC-eeEEEHHHHHHhcCC--------------CCCeEEEEeCCCc-cccCcHHHhCCcccCCHHHhhhhcChHHHHHH
Confidence 4566 888888888887752 2334899998774 5666652 0
Q ss_pred ------------HHHHHHHHHHhCCCEEEEEcCC------HHHHHHHHHCCCccc
Q 009895 459 ------------VLEELHKKLASNGIELVMASPR------WQVIHKLKSAKLLDR 495 (523)
Q Consensus 459 ------------~L~~~~~~~~~~g~~l~l~~~~------~~v~~~l~~~gl~~~ 495 (523)
...++.+.++++|+++.++.-+ ..++++++..|+.+.
T Consensus 106 ~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~ 160 (237)
T TIGR01672 106 NNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAM 160 (237)
T ss_pred HHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchh
Confidence 0456778889999999998654 346666777888654
No 111
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=28.31 E-value=2.7e+02 Score=28.07 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=33.8
Q ss_pred hhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhh
Q 009895 249 GSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTS 294 (523)
Q Consensus 249 s~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ 294 (523)
.++|+++|+. ...-.....+.|+.+|...+...+=++.+.+....
T Consensus 85 TA~~~~~PGg-~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~ 129 (318)
T PF05145_consen 85 TAFFASMPGG-LSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPF 129 (318)
T ss_pred HHHHHcCCcc-HHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHH
Confidence 6899999975 44455667889999999999999866666644433
No 112
>PLN03211 ABC transporter G-25; Provisional
Probab=27.78 E-value=1.8e+02 Score=32.74 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=56.6
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW--QVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
+++.+++| +..+.+|+.....+.+..++++++|.+++++.-++ ++.+..++.-+.+. |+...+.+.++++++.++.
T Consensus 224 ~P~iLlLD-EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 224 NPSLLILD-EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred CCCEEEEe-CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHHHHHHHHC
Confidence 46788888 78899999999999999999988888888887665 35666666544432 3334456788888887653
No 113
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=27.41 E-value=4e+02 Score=25.80 Aligned_cols=95 Identities=11% Similarity=0.047 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchh
Q 009895 198 PHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVS 277 (523)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s 277 (523)
..+...+..+++..+.++...-...+....+.+.+-+.-..=.+.=++.+++|+-++...+-+..+-....++...+-++
T Consensus 148 ~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~ 227 (280)
T PF00916_consen 148 DLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLIS 227 (280)
T ss_pred ccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHH
Confidence 34666677777777777777666666666666776666666677788889999988888788888888889988888888
Q ss_pred HHHHHHHHHHHHHHH
Q 009895 278 NIVMAITVLLSLELF 292 (523)
Q Consensus 278 ~i~~~~~~l~~~~~~ 292 (523)
+++..++++...-++
T Consensus 228 ~~~~l~~l~~~~~~l 242 (280)
T PF00916_consen 228 ALFVLLVLLFLAPLL 242 (280)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887766665443
No 114
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.81 E-value=3.3e+02 Score=23.97 Aligned_cols=20 Identities=25% Similarity=0.036 Sum_probs=14.3
Q ss_pred cCCccCCCccchhhhhhhcC
Q 009895 252 TSCYVATGSFSRTAVNFSAG 271 (523)
Q Consensus 252 fGg~p~~~~~s~s~~~~~~G 271 (523)
.||||.+++.--|+.....|
T Consensus 46 TGGMPSsHSA~VtALat~ia 65 (153)
T COG1963 46 TGGMPSSHSALVTALATSIA 65 (153)
T ss_pred cCCCCchHHHHHHHHHHHHH
Confidence 38999998877766655433
No 115
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=26.45 E-value=62 Score=28.43 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=9.7
Q ss_pred cccchhhHHHHHH
Q 009895 149 LPAIAPLLSVILS 161 (523)
Q Consensus 149 ~p~~~~li~vv~~ 161 (523)
+|.|++++++++-
T Consensus 32 lPiPGsViGMlLL 44 (141)
T PRK04125 32 IPMPASVIGLVLL 44 (141)
T ss_pred CCCcHHHHHHHHH
Confidence 6777888887654
No 116
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.27 E-value=3e+02 Score=27.69 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=46.9
Q ss_pred cEEEEEECCCceeEec-------hHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHh
Q 009895 397 GILTIRINSALFCFAN-------ANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLAS 469 (523)
Q Consensus 397 ~i~ii~l~G~~L~f~n-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~ 469 (523)
.+.+++++|. +.++. .+...+.++++-. +++.+.|+|+.+. +.=...+.+.+.+..+++++
T Consensus 60 ~Iavi~~~G~-I~~~~~~~~~~~~~~~~~~l~~~~~----------~~~vk~vvL~inS-PGG~v~as~~i~~~l~~l~~ 127 (317)
T COG0616 60 VIAVIHVEGA-IVAGGGPLRFIGGDDIEEILRAARA----------DPSVKAVVLRINS-PGGSVVASELIARALKRLRA 127 (317)
T ss_pred EEEEEEeeee-eecCCCccccccHHHHHHHHHHHhc----------CCCCceEEEEEEC-cCCchhHHHHHHHHHHHHhh
Confidence 6999999999 99766 5666666665433 3668899999866 44456666778888888888
Q ss_pred CC
Q 009895 470 NG 471 (523)
Q Consensus 470 ~g 471 (523)
++
T Consensus 128 ~~ 129 (317)
T COG0616 128 KK 129 (317)
T ss_pred cC
Confidence 76
No 117
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=26.05 E-value=3.1e+02 Score=27.67 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=46.7
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH-HHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHK-LKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~-l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
.+.|.+||| ..+.+.-++..+|.+..++--++..-+.+++-...+... ..+...... --++.+++.+|++++
T Consensus 112 g~~kV~iI~--~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~-----~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 112 GIAQVVIVD--PADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF-----KLPPAHEALAWLLAQ 184 (319)
T ss_pred CCcEEEEec--cHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC-----CCcCHHHHHHHHHHc
Confidence 456888887 678889999999999998876655455555544444432 333333321 135678888888754
No 118
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=25.88 E-value=2e+02 Score=26.21 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=34.8
Q ss_pred EEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHH
Q 009895 398 ILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSG 456 (523)
Q Consensus 398 i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssg 456 (523)
+.+++++|. +.-+..+++++.+++..+ ++.+.+++++..-...-.++
T Consensus 1 v~vi~i~G~-I~~~~~~~l~~~l~~A~~-----------~~~~~i~l~inSPGG~v~~~ 47 (172)
T cd07015 1 VYVAQIKGQ-ITSYTYDQFDRYITIAEQ-----------DNAEAIIIELDTPGGRADAA 47 (172)
T ss_pred CEEEEEeeE-ECHhHHHHHHHHHHHHhc-----------CCCCeEEEEEECCCCCHHHH
Confidence 368899999 998888888888876432 34688999887766654444
No 119
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.49 E-value=1.7e+02 Score=25.18 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHHHhCC---CEEEEEcCC-------HHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 453 DTSGILVLEELHKKLASNG---IELVMASPR-------WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 453 Dssgl~~L~~~~~~~~~~g---~~l~l~~~~-------~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
-.+....+.++.+.++++| ..+.+=+.. ++.++.|+..|+...|++.. +.++.++.++
T Consensus 60 ~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt---~~~~i~~~l~ 127 (128)
T cd02072 60 YGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT---PPEEAIADLK 127 (128)
T ss_pred ccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHh
Confidence 3344455666666776665 344444431 34567899999987775432 6666665543
No 120
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=25.33 E-value=6.5e+02 Score=26.67 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=48.5
Q ss_pred ECCCceeE---echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhC-CCEEEEEc
Q 009895 403 INSALFCF---ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASN-GIELVMAS 478 (523)
Q Consensus 403 l~G~~L~f---~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~-g~~l~l~~ 478 (523)
...+ +|. .+.+.+++.++...+ +++...+++-+..-..-|. ..+...+.+..++. +..++.+.
T Consensus 343 ~~NP-lDl~~~~~~~~~~~al~~l~~----------dp~vd~Vlv~~~~~~~~~~--~~~a~~l~~~~~~~~~KPvv~~~ 409 (447)
T TIGR02717 343 IKNP-VDVLGDATPERYAKALKTVAE----------DENVDGVVVVLTPTAMTDP--EEVAKGIIEGAKKSNEKPVVAGF 409 (447)
T ss_pred cCCC-EecCCCCCHHHHHHHHHHHHc----------CCCCCEEEEEccCCccCCH--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 3455 555 334556666655443 2556666655542122222 12223333333333 55664444
Q ss_pred CC----HHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 479 PR----WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 479 ~~----~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.. ++.++.|+..|+ .+|.+.++|..++.
T Consensus 410 ~gg~~~~~~~~~L~~~Gi-------p~f~~p~~A~~al~ 441 (447)
T TIGR02717 410 MGGKSVDPAKRILEENGI-------PNYTFPERAVKALS 441 (447)
T ss_pred cCCccHHHHHHHHHhCCC-------CccCCHHHHHHHHH
Confidence 32 346677777665 38999999988765
No 121
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=25.27 E-value=3.7e+02 Score=25.14 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=37.7
Q ss_pred ccccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhH-------HHHHHHHH
Q 009895 6 EIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAA-------IVGFMAGA 78 (523)
Q Consensus 6 ~~~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~V-------i~Gf~~gi 78 (523)
|+..||.++.+.++.+.-.+ +...+.... .+.+++.++.++.-+. -+++.|++-+.- .+=+++++
T Consensus 119 PllaGPG~It~vi~~~~~~~------~~~~~~~~~-~ai~~~~~~~~l~l~~-a~~i~~~lG~~g~~vi~Ri~Glil~ai 190 (203)
T PF01914_consen 119 PLLAGPGTITTVIVLSAEAG------SLQSLLIVL-IAILLVALITYLILRF-ADKIMRRLGKTGLQVITRIMGLILAAI 190 (203)
T ss_pred hhccChHHHHHHHHHHhccC------cHHHHHHHH-HHHHHHHHHHHHHHHH-hHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 56789998888887754433 112222222 2222222222222111 345555555544 44455666
Q ss_pred HHHHHHhhhcc
Q 009895 79 AIVIGLQQLKG 89 (523)
Q Consensus 79 gl~i~~~ql~~ 89 (523)
|+.++.++++.
T Consensus 191 avq~i~~Gl~~ 201 (203)
T PF01914_consen 191 AVQMILSGLRG 201 (203)
T ss_pred HHHHHHHHHHH
Confidence 77666665543
No 122
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=25.05 E-value=3.4e+02 Score=25.67 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=43.5
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAK 491 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g 491 (523)
.+++++.+| +....+|--++.-+.++.++++++|+-+.++.-| |++.|..+.
T Consensus 156 ~~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHN--VREtL~i~d 207 (243)
T COG1137 156 ANPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN--VRETLDICD 207 (243)
T ss_pred cCCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEcccc--HHHHHhhhh
Confidence 457899999 6778889999999999999999999999998754 677776554
No 123
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=25.01 E-value=2.7e+02 Score=25.24 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=39.1
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Q 009895 439 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVI 484 (523)
Q Consensus 439 ~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~ 484 (523)
++.+++| +..+.+|....+.+.+..++++++|..++++.-+.+..
T Consensus 108 p~llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 108 GTLFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred CCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 6788887 67899999999999999999988899999998887654
No 124
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=24.96 E-value=8.5e+02 Score=25.82 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHhcccC-CHHHHHhhhhcCchhHHHHHHHHHHHHHHhhhHHHHHHH
Q 009895 277 SNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLI-DINEAINIYKVDKLDFLACIGAFLGVLFASVEIGLLAAV 355 (523)
Q Consensus 277 s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~~~l~-~~~~~~~~~~~~~~d~~v~~~t~~~~~~~~~~~gi~~Gi 355 (523)
++.+.++++.+.+++.+-+=+..|+..++.+.-.+..... ... -..+. . .-.++...++..+.+|+++++
T Consensus 136 ~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~g-----~~~p~---~-~~~~l~~~ll~P~~ig~ai~~ 206 (459)
T PF10337_consen 136 ASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTYG-----PLFPT---F-FAYTLGKTLLKPFLIGIAIAL 206 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHhC-----cCcCc---c-hHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667667777778887655554433332211 000 01111 1 223334455667777777777
Q ss_pred HHHHHH
Q 009895 356 TISFAK 361 (523)
Q Consensus 356 ~~s~~~ 361 (523)
+++++.
T Consensus 207 ~vslli 212 (459)
T PF10337_consen 207 VVSLLI 212 (459)
T ss_pred HHheee
Confidence 777664
No 125
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=24.57 E-value=1.5e+02 Score=29.74 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=40.3
Q ss_pred CceEEEEEecCC-----------CccChHH-HHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHH----CCCcccc
Q 009895 438 TIQAVIIDMSNS-----------MNIDTSG-ILVLEELHKKLASNGIELVMASPR--WQVIHKLKS----AKLLDRI 496 (523)
Q Consensus 438 ~~~~vIlD~s~v-----------~~iDssg-l~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~----~gl~~~~ 496 (523)
..|.+|+|+.+. ..|.... -.-+.+..++++++|+.+.+|.-+ +.+.+.|+. .++.+.|
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDF 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHe
Confidence 468899999752 1122221 346788889999999999999765 457778887 6665443
No 126
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=24.44 E-value=2.8e+02 Score=26.58 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=58.5
Q ss_pred cEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEE
Q 009895 397 GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVM 476 (523)
Q Consensus 397 ~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l 476 (523)
+...+-+..+ |.--+.+.+++++...++ .+..-+.|++=.-+|...++.+.+++++|++.|+-+ +
T Consensus 71 ~LvrviVpk~-Ll~q~~~~L~~~lg~l~~-------------r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gil-l 135 (229)
T PF12340_consen 71 RLVRVIVPKA-LLEQMRQMLRSRLGGLLN-------------RRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGIL-L 135 (229)
T ss_pred cEEEEEcCHH-HHHHHHHHHHHHHHHHhC-------------CeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEE-E
Confidence 4444556666 666667777777765443 467889999999999999999999999999887744 3
Q ss_pred EcCCHHHHHHHHHCCCcc
Q 009895 477 ASPRWQVIHKLKSAKLLD 494 (523)
Q Consensus 477 ~~~~~~v~~~l~~~gl~~ 494 (523)
..|+-...|+..++..
T Consensus 136 --~~PEhilSf~L~~le~ 151 (229)
T PF12340_consen 136 --ATPEHILSFKLKGLER 151 (229)
T ss_pred --eChHHHHHHHHHHHHH
Confidence 3455566677766643
No 127
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=24.43 E-value=2.2e+02 Score=22.97 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=27.3
Q ss_pred CchhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhcCcC
Q 009895 328 DKLDFLACIGAFLGVLFAS-VEIGLLAAVTISFAKILLNAVRPG 370 (523)
Q Consensus 328 ~~~d~~v~~~t~~~~~~~~-~~~gi~~Gi~~s~~~~~~~~~~~~ 370 (523)
+..|..+.++.+...+..+ ..+|+++|+++...+--.+..+++
T Consensus 19 ~~De~~~~~~~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~~~~~ 62 (95)
T PF07178_consen 19 PMDEFIPALILFVIGILSGHFLIGLILGIVLWWGYRKFKKGRGR 62 (95)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccCCc
Confidence 4467777777776666555 467788877776655444544444
No 128
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=24.22 E-value=5.8e+02 Score=26.32 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=39.4
Q ss_pred cCCceEEEEEec-CCCccChHHHHHHHHHHHHHHhCCCEEEEEcC---CHHHHHHHHHCCCccccCCcccccCHHHHHHH
Q 009895 436 KRTIQAVIIDMS-NSMNIDTSGILVLEELHKKLASNGIELVMASP---RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEA 511 (523)
Q Consensus 436 ~~~~~~vIlD~s-~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~---~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~ 511 (523)
+++.+.+++.+. +.+..|. -.+.+.+..++.. .+..++.+-. .++.++.|+..|+ .+ .+|.+.++|++.
T Consensus 308 dp~vd~ilv~i~gg~~~~~~-va~~i~~a~~~~~-~~kPvvv~~~g~~~~~~~~~L~~~G~--~i---p~~~~~~~Av~~ 380 (386)
T TIGR01016 308 DKSVKVVFINIFGGITRCDL-VAKGLVEALKEVG-VNVPVVVRLEGTNVEEGKKILAESGL--NI---IFATSMEEAAEK 380 (386)
T ss_pred CCCCCEEEEECCCCCCCHHH-HHHHHHHHHHhcC-CCCcEEEEeCCccHHHHHHHHHHcCC--Cc---cccCCHHHHHHH
Confidence 366788887654 3333332 2244444444421 1145533332 2456777888884 12 389999999877
Q ss_pred Hh
Q 009895 512 CL 513 (523)
Q Consensus 512 ~~ 513 (523)
+-
T Consensus 381 ~~ 382 (386)
T TIGR01016 381 AV 382 (386)
T ss_pred HH
Confidence 54
No 129
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=24.01 E-value=52 Score=27.10 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=14.6
Q ss_pred ccccCHHHHHHHHhhcc
Q 009895 500 CVYLSVAEAMEACLTSK 516 (523)
Q Consensus 500 ~if~s~~~Al~~~~~~~ 516 (523)
.-|+|.|||+++|+.+.
T Consensus 53 l~F~skE~Ai~yaer~G 69 (101)
T PF04800_consen 53 LKFDSKEDAIAYAERNG 69 (101)
T ss_dssp EEESSHHHHHHHHHHCT
T ss_pred eeeCCHHHHHHHHHHcC
Confidence 57999999999998653
No 130
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.76 E-value=2.3e+02 Score=25.94 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH---HhhhhHhHHHHHHHHHHHHHHHhhhcccc
Q 009895 39 LVFTVTFFAGVFQSVFGLFRLGFL---VDFLSHAAIVGFMAGAAIVIGLQQLKGLL 91 (523)
Q Consensus 39 ~~~~~~~l~G~~~~~lg~~~lg~l---~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~ 91 (523)
++..+.++.|++.++.|...+-.. .-.+..+.+++.+.++|+.++..++..+.
T Consensus 6 i~~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666555554432111 12223445555555666666666655443
No 131
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=23.59 E-value=2.3e+02 Score=22.14 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=35.8
Q ss_pred HHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 463 LHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 463 ~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
+.+.+..+|+++++|+- .+...+.|+..|+.-... .-.+++|+++...
T Consensus 45 ~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~---~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG---AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES---TSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHh
Confidence 34555568999988875 788999999999853332 4578999998765
No 132
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=23.04 E-value=3.7e+02 Score=24.18 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=37.4
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV 475 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~ 475 (523)
.+.+++.+.+++.-+ +++.+.|+|+.... .-|....+.+.+..+++++.+..++
T Consensus 22 ~~~~~l~~~l~~a~~----------d~~v~~vvl~~~~~-gg~~~~~~~~~~~i~~~~~~~kpVi 75 (177)
T cd07014 22 VSGDTTAAQIRDARL----------DPKVKAIVLRVNSP-GGSVTASEVIRAELAAARAAGKPVV 75 (177)
T ss_pred cCHHHHHHHHHHHhc----------CCCceEEEEEeeCC-CcCHHHHHHHHHHHHHHHhCCCCEE
Confidence 356677777776433 36789999999654 4587777777777778876654433
No 133
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=22.87 E-value=3e+02 Score=26.95 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=39.8
Q ss_pred CchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHHHhhHhh
Q 009895 235 GNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLELFTSLLY 297 (523)
Q Consensus 235 ~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~~~~ll~ 297 (523)
..-|+...|+.|+-++. --=|..++.-.|...+.+|..++-+....++-+.....++.-+.+
T Consensus 53 atLEL~~LG~~~iGgav-pPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 53 ATLELAALGWANIGGAV-PPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HHHHHHHHhCcCcccCC-CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999986522 222456677778888888877666666556555555555544444
No 134
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=22.81 E-value=1.7e+02 Score=24.66 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCH----------HHHHHHHHCCCc
Q 009895 459 VLEELHKKLASNGIELVMASPRW----------QVIHKLKSAKLL 493 (523)
Q Consensus 459 ~L~~~~~~~~~~g~~l~l~~~~~----------~v~~~l~~~gl~ 493 (523)
-..+..+.++++|+++.++.-++ .+++.++..++.
T Consensus 29 ~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 29 EVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 44567788899999999987754 578888888875
No 135
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=22.53 E-value=2.9e+02 Score=23.62 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=32.6
Q ss_pred eEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc
Q 009895 440 QAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS 478 (523)
Q Consensus 440 ~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 478 (523)
.-||.|.+.+..-|-+--+.+.++.+..++.|+.+.-.+
T Consensus 65 NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~l~ 103 (124)
T COG2450 65 NIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAKLG 103 (124)
T ss_pred CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhhhc
Confidence 689999999999888888888888888888887765444
No 136
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=21.95 E-value=8.2e+02 Score=25.24 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=45.9
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecC-CCccChHHHHHHHHHHHHHHhCCCEEEEEcCC---HHHHHH
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSN-SMNIDTSGILVLEELHKKLASNGIELVMASPR---WQVIHK 486 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~-v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~---~~v~~~ 486 (523)
.+.+.+++.++..++ +++.+.+++.+.. .+..|. -.+.+.+..++. +.+..++.+... ++.++.
T Consensus 293 ~~~e~~~~aL~~l~~----------d~~vd~vlv~~~~~~~~~~~-va~~i~~~~~~~-~~~kPvv~~~~g~~~~~~~~~ 360 (388)
T PRK00696 293 ATAERVAEAFKIILS----------DPNVKAILVNIFGGITRCDV-IAEGIIAAVKEV-GVTVPLVVRLEGTNVELGKKI 360 (388)
T ss_pred CCHHHHHHHHHHHhc----------CCCCCEEEEEeCCCCCCHHH-HHHHHHHHHHhc-CCCCcEEEEeCCCCHHHHHHH
Confidence 344566666655444 2567777765542 222221 223333333221 145566444322 456777
Q ss_pred HHHCCCccccCCcccccCHHHHHHHHh
Q 009895 487 LKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 487 l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
|+..|+ -+ .+|+|.++|..++.
T Consensus 361 L~~~Gi--~i---p~f~~pe~A~~al~ 382 (388)
T PRK00696 361 LAESGL--NI---IAADTLDDAAQKAV 382 (388)
T ss_pred HHHCCC--Cc---eecCCHHHHHHHHH
Confidence 887774 11 38999999998875
No 137
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=21.95 E-value=2.3e+02 Score=26.00 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHH-HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCC
Q 009895 413 ANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGIL-VLEELHKKLASNGIELVMASPRWQVIHKLKSAK 491 (523)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~-~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g 491 (523)
..++.+-+++.+.+.. ..+-.|.=|+...+.-..+.-... .+..+.+.+..+|.+-+++...+++++.|++.|
T Consensus 63 EqYLd~piE~~l~~~~------g~~v~R~~IvEvGnLAs~~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~rlg 136 (179)
T PF12261_consen 63 EQYLDQPIEQLLSRRF------GRPVSRSQIVEVGNLASFSPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRRLG 136 (179)
T ss_pred hhhcCCcHHHHHHhhc------CCCcchhheeEeechhhcCcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHcC
Confidence 3445555555554321 113456778888888777765555 688888999999999999999999999999999
Q ss_pred Ccc
Q 009895 492 LLD 494 (523)
Q Consensus 492 l~~ 494 (523)
+.-
T Consensus 137 l~~ 139 (179)
T PF12261_consen 137 LPP 139 (179)
T ss_pred CCc
Confidence 964
No 138
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=21.65 E-value=3.6e+02 Score=25.56 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=48.8
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-HHHHHHHHHCCCccccCCcccccCHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEA 511 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~-~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~ 511 (523)
.+++.+++| +..+.+|.....-+.++.+++++.|..+++..-. +++..+-++.=+... | +.++..--+++..
T Consensus 150 h~P~i~vlD-EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~-G-evv~~gs~~~l~~ 222 (245)
T COG4555 150 HDPSILVLD-EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHK-G-EVVLEGSIEALDA 222 (245)
T ss_pred cCCCeEEEc-CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEec-C-cEEEcCCHHHHHH
Confidence 456788888 7889999999999999999999999888888753 444444433222211 2 2345444444443
No 139
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.64 E-value=1.5e+02 Score=25.37 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=10.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhcC
Q 009895 345 ASVEIGLLAAVTISFAKILLNAVR 368 (523)
Q Consensus 345 ~~~~~gi~~Gi~~s~~~~~~~~~~ 368 (523)
+|+..|+ +|+++-+.++++|..|
T Consensus 71 ~gv~aGv-Ig~Illi~y~irR~~K 93 (122)
T PF01102_consen 71 FGVMAGV-IGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhc
Confidence 3444444 4455544555555443
No 140
>COG4392 Predicted membrane protein [Function unknown]
Probab=21.24 E-value=4.2e+02 Score=22.06 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=34.9
Q ss_pred hhHhhhhhhHHHHHHHHHHhcccCCHHHHHhhhhcCchhHHHHHHHHH-HHHHHhhhHHHHHHHHHHHH
Q 009895 293 TSLLYYTPIAILASIILSALPGLIDINEAINIYKVDKLDFLACIGAFL-GVLFASVEIGLLAAVTISFA 360 (523)
Q Consensus 293 ~~ll~~iP~~vla~ili~~~~~l~~~~~~~~~~~~~~~d~~v~~~t~~-~~~~~~~~~gi~~Gi~~s~~ 360 (523)
-.+++|+|.++++|+.+-..+ .........|+.++ ..-.++|.+ ....-++...+++|++.-..
T Consensus 38 ~~~L~fvP~a~ltAL~~p~vl--~~~~g~~~s~~~p~--llA~lvav~la~lTrnll~~il~Gm~~~~~ 102 (107)
T COG4392 38 RRFLSFVPVAILTALIAPDVL--MPHGGLDPSWNNPY--LLAGLVAVALAILTRNLLATILVGMASFAL 102 (107)
T ss_pred HHHHhhccHHHHHHHHhhhHh--ccCCCcchhhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999765332 22222222233322 112222222 33334888888888865443
No 141
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=21.21 E-value=9.6e+02 Score=26.69 Aligned_cols=243 Identities=10% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHHHHHHHHHHHHH-HhhHhhhhhhHHHHHHHHHHhcccCCHH
Q 009895 241 AMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIVMAITVLLSLEL-FTSLLYYTPIAILASIILSALPGLIDIN 319 (523)
Q Consensus 241 a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~~~~~~l~~~~~-~~~ll~~iP~~vla~ili~~~~~l~~~~ 319 (523)
..|++-.+|+|..|+-...+--|..+..+... ..+++.+++++.+.+- -.+.+..-|..+++.++.....+.+-..
T Consensus 237 ~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~p---f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~ 313 (621)
T PRK03562 237 EVGLSMALGAFLAGVLLASSEYRHALESDIEP---FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLW 313 (621)
T ss_pred HhCccHHHHHHHHHHHhcCCccHHHHHHHHHH---HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhcCchhHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHHhcCcCeEEeeecCCCCcccCCCCCCCc
Q 009895 320 EAINIYKVDKLDFLACIGAFL-------GVLFASVEIGLLAAVTISFAKILLNAVRPGIELQGRLPRTDTYGDISQFPMA 392 (523)
Q Consensus 320 ~~~~~~~~~~~d~~v~~~t~~-------~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (523)
..-++.+.++.|......... .....+...|++--=..+.+....-.+---...+.+.-+.-..+..++.+..
T Consensus 314 ~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~~~~~~~~~~ 393 (621)
T PRK03562 314 LLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQSRTEEAREA 393 (621)
T ss_pred HHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccc
Q ss_pred cCCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCC
Q 009895 393 IKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGI 472 (523)
Q Consensus 393 ~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~ 472 (523)
++.++- +++ .--....++=+.+.+.+++ .+.+.+++|.+. +..+++++.|.
T Consensus 394 ~~~~~~-----~~~-vII~G~Gr~G~~va~~L~~----------~g~~vvvID~d~-------------~~v~~~~~~g~ 444 (621)
T PRK03562 394 DEIDEQ-----QPR-VIIAGFGRFGQIVGRLLLS----------SGVKMTVLDHDP-------------DHIETLRKFGM 444 (621)
T ss_pred cccccc-----cCc-EEEEecChHHHHHHHHHHh----------CCCCEEEEECCH-------------HHHHHHHhcCC
Q ss_pred EEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhccc
Q 009895 473 ELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKF 517 (523)
Q Consensus 473 ~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~ 517 (523)
+++.-+..+ .+.|+..|+.+---=-...+|.++.+..++.-|.
T Consensus 445 ~v~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~ 487 (621)
T PRK03562 445 KVFYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKE 487 (621)
T ss_pred eEEEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHH
No 142
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.06 E-value=6.5e+02 Score=23.97 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=37.4
Q ss_pred CcchhHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHhcccCCHHHHHhhh-----hcCchhHHHHHHHHHHHHHHhh
Q 009895 273 QTVVSNIVMAITVLLSLELFTSLLYYTPIAILASIILSALPGLIDINEAINIY-----KVDKLDFLACIGAFLGVLFASV 347 (523)
Q Consensus 273 ~t~~s~i~~~~~~l~~~~~~~~ll~~iP~~vla~ili~~~~~l~~~~~~~~~~-----~~~~~d~~v~~~t~~~~~~~~~ 347 (523)
+++...++.|+..+++++. |=++++.+|.++++|-++..++ +...++- ..+++--+++++
T Consensus 144 ~k~~k~~~~gi~aml~Vf~------------LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~---~~~~lwyi~Y~v 208 (230)
T PF03904_consen 144 QKRQKSMYKGIGAMLFVFM------------LFALVMTIGSDFMDFLHVDHLYKAIASKIKASES---FWTYLWYIAYLV 208 (230)
T ss_pred HHHHHHHHHhHHHHHHHHH------------HHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHh---HHHHHHHHHHhh
Confidence 4555666666554444422 2234455566666665544433 2223333 223333455666
Q ss_pred hHHHHHHHHHHHHHHH
Q 009895 348 EIGLLAAVTISFAKIL 363 (523)
Q Consensus 348 ~~gi~~Gi~~s~~~~~ 363 (523)
..-+.+|..+.+.-.+
T Consensus 209 PY~~~ig~~i~l~~~~ 224 (230)
T PF03904_consen 209 PYIFAIGLFIYLYEWI 224 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666566655544444
No 143
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=20.45 E-value=6e+02 Score=22.44 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhhhhcCCCcchhHHH
Q 009895 201 GQTAKIGLISAVVALTEAIAVGRSFASIKGYHLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVNFSAGCQTVVSNIV 280 (523)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~~~~Ga~t~~s~i~ 280 (523)
.+.+...+...+..+.-+...+..+.+.++. |. ..++++..|+. ...-+....+.|+..+.....
T Consensus 73 ~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~--~~------------~ta~La~~PGG-l~~m~~~A~~~gad~~~V~~~ 137 (156)
T TIGR03082 73 KRLWPAALLSTVLLLALSALLAWLLARLTGV--DP------------LTAFLATSPGG-ASEMAALAAELGADVAFVAAM 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CH------------HHHHHHhCCch-HHHHHHHHHHhCCCHHHHHHH
Confidence 3344444444444444455555555544442 22 34678888864 445566677789999999999
Q ss_pred HHHHHHHHHHHH
Q 009895 281 MAITVLLSLELF 292 (523)
Q Consensus 281 ~~~~~l~~~~~~ 292 (523)
+-.=++.+.+..
T Consensus 138 q~~Rl~~v~~~~ 149 (156)
T TIGR03082 138 QTLRLLFVVLLV 149 (156)
T ss_pred HHHHHHHHHHHH
Confidence 988666665433
No 144
>PRK10408 putative L-valine exporter; Provisional
Probab=20.39 E-value=4.7e+02 Score=21.77 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=34.7
Q ss_pred ccCchHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHhHHHHHHHHHHHH
Q 009895 8 AIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAGVFQSVFGLFRLGFLVDFLSHAAIVGFMAGAAIV 81 (523)
Q Consensus 8 ~~Gp~a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~lg~~~lg~l~~~ip~~Vi~Gf~~gigl~ 81 (523)
++|+.++.|+++.+.+-... .+|+..++. +.|..-+...+. |-.+.++....+...-|+.+-
T Consensus 46 sIGIAsIcaLLVVS~~P~v~---~~~~k~~pt------lvGf~~l~~~fy---ktrsIi~aTL~gAl~YGl~fk 107 (111)
T PRK10408 46 SIGIASICALLVVSTAPEVM---HDPRKLLPT------LVGFLVLGACFY---KTRSIIIATLLGALAYGLAFK 107 (111)
T ss_pred hccHHHHHHHHHHhcChHHH---hChHHHHHH------HHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHH
Confidence 57888999998887766543 234454444 334433333333 223455666666555555543
No 145
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=20.34 E-value=4.1e+02 Score=27.41 Aligned_cols=46 Identities=9% Similarity=-0.021 Sum_probs=28.4
Q ss_pred HHHHHHhCCCEEEEEcCCH----HHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 463 LHKKLASNGIELVMASPRW----QVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 463 ~~~~~~~~g~~l~l~~~~~----~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
+.+...+.+..+++||..+ .+++.|...+..+ --.|.+||-++.++
T Consensus 321 ~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~------~~~~~~~a~~~~~~ 370 (382)
T cd06207 321 VYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKH------GGGDEELAEKKIEE 370 (382)
T ss_pred HHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 3344444445899999776 6777776544422 12466778777654
No 146
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.31 E-value=4e+02 Score=24.52 Aligned_cols=47 Identities=15% Similarity=0.387 Sum_probs=39.4
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVI 484 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~ 484 (523)
.+++.+++| +..+.+|....+.+.+..++++++|..++++.-+.+..
T Consensus 145 ~~p~~lllD-EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~ 191 (210)
T cd03269 145 HDPELLILD-EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV 191 (210)
T ss_pred cCCCEEEEe-CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 356888988 67799999999999999999988888888888776543
No 147
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=20.18 E-value=1.5e+02 Score=26.51 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccC
Q 009895 460 LEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIG 497 (523)
Q Consensus 460 L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 497 (523)
..++.+.++++|.++.+++.++...+.+++.|+.+.+.
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~~~f~ 129 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNAPTVLEKLGLIDYFD 129 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcHhhCc
Confidence 34555678888999999887666778899998876653
Done!