Query 009895
Match_columns 523
No_of_seqs 259 out of 1787
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1.8E-28 6.2E-33 253.9 25.8 273 37-341 87-375 (429)
2 3llo_A Prestin; STAS domain, c 99.9 4.4E-25 1.5E-29 195.6 13.0 142 368-517 1-143 (143)
3 4dgh_A Sulfate permease family 99.9 3.2E-22 1.1E-26 174.1 8.9 124 379-515 2-125 (130)
4 2kln_A Probable sulphate-trans 99.9 7.8E-22 2.7E-26 171.6 10.6 125 383-516 1-125 (130)
5 4dgf_A Sulfate transporter sul 99.9 7E-22 2.4E-26 173.1 8.5 126 376-515 2-128 (135)
6 3ny7_A YCHM protein, sulfate t 99.8 3.9E-19 1.3E-23 151.6 9.3 104 394-511 14-117 (118)
7 2ka5_A Putative anti-sigma fac 99.7 1.7E-17 6E-22 142.9 10.9 108 392-514 16-124 (125)
8 3t6o_A Sulfate transporter/ant 99.7 2E-17 6.9E-22 141.7 8.6 107 393-513 10-120 (121)
9 4hyl_A Stage II sporulation pr 99.7 3.2E-17 1.1E-21 139.6 7.6 106 394-515 10-115 (117)
10 1th8_B Anti-sigma F factor ant 99.7 5.6E-17 1.9E-21 137.7 8.4 107 394-514 9-115 (116)
11 1h4x_A SPOIIAA, anti-sigma F f 99.7 1.1E-16 3.7E-21 136.2 9.0 108 394-516 8-115 (117)
12 1sbo_A Putative anti-sigma fac 99.6 6.1E-16 2.1E-20 129.8 11.0 101 394-508 10-110 (110)
13 3zxn_A RSBS, anti-sigma-factor 99.6 2.1E-14 7.1E-19 123.0 12.0 108 397-518 12-120 (123)
14 3oiz_A Antisigma-factor antago 99.6 7.6E-16 2.6E-20 126.8 2.5 85 395-493 14-98 (99)
15 3agd_A Salt-tolerant glutamina 96.3 0.0059 2E-07 61.4 6.7 84 396-480 324-445 (456)
16 3bl4_A Uncharacterized protein 95.2 0.024 8.2E-07 47.5 5.3 103 395-514 18-123 (124)
17 2q3l_A Uncharacterized protein 92.0 0.24 8.3E-06 41.5 5.9 109 395-513 18-126 (126)
18 3qe7_A Uracil permease; uracil 80.2 35 0.0012 34.6 15.0 126 233-360 41-198 (429)
19 3dcm_X AdoMet, uncharacterized 70.6 6.2 0.00021 35.3 5.6 60 460-519 31-105 (192)
20 3ghf_A Septum site-determining 67.3 20 0.00068 29.3 7.6 80 397-493 16-98 (120)
21 3pdw_A Uncharacterized hydrola 66.4 15 0.00052 33.9 7.8 55 438-493 5-65 (266)
22 2ook_A Hypothetical protein; s 63.8 0.2 6.9E-06 42.0 -5.4 107 395-513 18-126 (127)
23 2csu_A 457AA long hypothetical 63.1 42 0.0014 34.3 10.9 84 411-513 351-442 (457)
24 3rst_A Signal peptide peptidas 55.9 41 0.0014 31.0 8.6 68 396-475 3-83 (240)
25 2pr7_A Haloacid dehalogenase/e 53.7 21 0.00072 28.7 5.6 58 439-496 2-61 (137)
26 3qgm_A P-nitrophenyl phosphata 50.7 21 0.00073 32.8 5.8 56 438-493 7-67 (268)
27 2fp4_B Succinyl-COA ligase [GD 46.7 94 0.0032 31.0 10.1 84 411-513 300-389 (395)
28 3epr_A Hydrolase, haloacid deh 44.2 18 0.0006 33.5 4.0 74 438-513 4-82 (264)
29 3viv_A 441AA long hypothetical 41.3 39 0.0013 31.0 5.8 66 394-475 6-71 (230)
30 3n07_A 3-deoxy-D-manno-octulos 39.5 15 0.00051 32.7 2.6 73 438-514 24-110 (195)
31 3ij5_A 3-deoxy-D-manno-octulos 38.1 57 0.0019 29.2 6.4 72 438-515 48-135 (211)
32 2yx6_A Hypothetical protein PH 37.6 74 0.0025 25.5 6.4 57 462-521 54-111 (121)
33 2i33_A Acid phosphatase; HAD s 36.6 28 0.00095 32.5 4.1 56 437-493 57-144 (258)
34 2hx1_A Predicted sugar phospha 33.9 32 0.0011 32.0 4.1 74 438-513 13-92 (284)
35 2qr3_A Two-component system re 33.6 1.2E+02 0.0042 23.8 7.3 76 437-514 46-125 (140)
36 3nvb_A Uncharacterized protein 33.3 1.8E+02 0.0061 28.9 9.5 53 437-489 220-292 (387)
37 3ib6_A Uncharacterized protein 33.0 42 0.0014 29.1 4.5 38 459-496 38-80 (189)
38 3grc_A Sensor protein, kinase; 33.0 1E+02 0.0036 24.4 6.8 73 437-512 49-124 (140)
39 4e7p_A Response regulator; DNA 32.8 53 0.0018 26.8 4.9 74 437-515 65-140 (150)
40 3cz5_A Two-component response 32.5 1.1E+02 0.0037 24.8 6.9 73 437-514 50-124 (153)
41 3cnb_A DNA-binding response re 31.9 1.1E+02 0.0037 24.2 6.7 75 437-514 53-129 (143)
42 2qxy_A Response regulator; reg 30.9 99 0.0034 24.6 6.3 71 437-513 47-119 (142)
43 3eul_A Possible nitrate/nitrit 30.6 77 0.0026 25.8 5.6 72 438-514 61-134 (152)
44 2oyc_A PLP phosphatase, pyrido 30.5 74 0.0025 29.9 6.1 73 439-512 21-98 (306)
45 3kc2_A Uncharacterized protein 29.6 27 0.00091 34.4 2.7 73 438-512 12-90 (352)
46 3hv2_A Response regulator/HD d 29.6 1.1E+02 0.0037 24.9 6.4 70 437-511 57-129 (153)
47 2nu8_B SCS-beta, succinyl-COA 29.1 2.3E+02 0.008 27.9 9.7 89 401-512 287-381 (388)
48 3hdg_A Uncharacterized protein 28.5 51 0.0017 26.3 4.0 72 438-514 51-124 (137)
49 3l8h_A Putative haloacid dehal 28.4 84 0.0029 26.5 5.6 57 440-496 2-87 (179)
50 1o13_A Probable NIFB protein; 27.2 98 0.0034 25.6 5.5 54 462-518 67-121 (136)
51 3hzh_A Chemotaxis response reg 26.8 1E+02 0.0034 25.3 5.7 56 438-498 83-140 (157)
52 2gmw_A D,D-heptose 1,7-bisphos 26.7 49 0.0017 29.3 3.9 56 438-493 24-105 (211)
53 3gt7_A Sensor protein; structu 25.9 1.2E+02 0.0043 24.6 6.1 73 437-512 50-124 (154)
54 3eod_A Protein HNR; response r 25.6 90 0.0031 24.4 5.0 74 437-515 50-126 (130)
55 3f6c_A Positive transcription 25.4 51 0.0017 26.1 3.4 73 438-515 46-120 (134)
56 2wfb_A Putative uncharacterize 25.2 1.5E+02 0.0051 23.6 6.2 56 462-520 58-115 (120)
57 1zjj_A Hypothetical protein PH 25.0 67 0.0023 29.4 4.6 73 440-514 2-79 (263)
58 3n1u_A Hydrolase, HAD superfam 24.9 21 0.00073 31.4 0.9 72 437-512 17-102 (191)
59 3jte_A Response regulator rece 24.7 1.4E+02 0.0047 23.7 6.1 71 437-512 48-120 (143)
60 1tf7_A KAIC; homohexamer, hexa 24.6 83 0.0029 32.5 5.6 42 437-480 370-416 (525)
61 3lte_A Response regulator; str 24.1 1.9E+02 0.0065 22.3 6.8 74 437-513 49-123 (132)
62 1dz3_A Stage 0 sporulation pro 23.7 2.5E+02 0.0086 21.6 8.1 76 438-517 48-125 (130)
63 1vjr_A 4-nitrophenylphosphatas 23.7 49 0.0017 30.3 3.3 57 437-493 15-76 (271)
64 3t6k_A Response regulator rece 23.3 2.5E+02 0.0087 22.0 7.5 73 437-512 47-121 (136)
65 3kht_A Response regulator; PSI 23.0 88 0.003 25.0 4.5 59 437-498 50-110 (144)
66 4gib_A Beta-phosphoglucomutase 22.8 70 0.0024 29.0 4.2 38 460-497 121-158 (250)
67 2re2_A Uncharacterized protein 22.4 1.6E+02 0.0053 24.3 5.9 52 462-517 70-122 (136)
68 2lju_A Putative oxidoreductase 22.3 37 0.0013 27.1 1.8 17 500-516 64-80 (108)
69 2jya_A AGR_C_3324P, uncharacte 21.6 35 0.0012 27.2 1.5 17 500-516 56-72 (106)
70 3to5_A CHEY homolog; alpha(5)b 21.4 2.9E+02 0.0098 22.4 7.4 59 437-498 56-116 (134)
71 1eo1_A Hypothetical protein MT 20.7 1.9E+02 0.0064 23.1 6.0 55 462-519 56-111 (124)
72 3f6p_A Transcriptional regulat 20.7 2.8E+02 0.0096 21.0 7.2 56 437-498 45-102 (120)
73 2qv0_A Protein MRKE; structura 20.6 1.3E+02 0.0046 23.8 5.2 56 437-498 54-110 (143)
74 2pl1_A Transcriptional regulat 20.6 1.9E+02 0.0063 21.9 5.9 56 437-497 43-100 (121)
75 3b2n_A Uncharacterized protein 20.5 2.4E+02 0.0082 21.9 6.7 71 438-513 49-121 (133)
76 2olj_A Amino acid ABC transpor 20.4 4.3E+02 0.015 24.2 9.2 46 437-483 176-221 (263)
77 1b0u_A Histidine permease; ABC 20.4 4E+02 0.014 24.4 9.0 46 437-483 170-215 (262)
78 2pcj_A ABC transporter, lipopr 20.2 2.4E+02 0.0083 25.1 7.3 45 437-482 157-201 (224)
79 3m6m_D Sensory/regulatory prot 20.2 3.3E+02 0.011 21.5 9.2 75 437-514 57-135 (143)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.96 E-value=1.8e-28 Score=253.93 Aligned_cols=273 Identities=13% Similarity=0.084 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hhh--hHHhhhhHhHHHHHHHHHHHHHHHhhhccccCccccCCCcchHHHHHHHHhh
Q 009895 37 RKLVFTVTFFAGVFQSVFGLF--RLG--FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGSVFSS 112 (523)
Q Consensus 37 ~~~~~~~~~l~G~~~~~lg~~--~lg--~l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~ 112 (523)
++.+.++.+++|+++++++.+ |+| ++.|++|+.|++.+++.+|+.++..++++..|... .++
T Consensus 87 ~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~---~~~----------- 152 (429)
T 3qe7_A 87 YEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA---EGQ----------- 152 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB---TTB-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC---CCc-----------
Confidence 678899999999999999998 764 89999999999999999999999999887543211 011
Q ss_pred cCcCccchhHHHHHHHHHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHhhcCCCCeeEeeccC-CCCCCCCCC
Q 009895 113 LHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNPSSAH 191 (523)
Q Consensus 113 ~~~~~~~~~~~~lg~~~l~~l~~~~~~~~~~~~~~~~p~~~~li~vv~~~~~~~~~~~~~~~~~~~g~ip-~~~p~~~~~ 191 (523)
. .++.++.++++++++++++.++.|++.| .+++|+++++++++++.++..+ .+.+++.| .++|.+..|
T Consensus 153 --~--~~~~~~~la~~tl~iii~~~~~~kg~~~-----~~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~~~~P 221 (429)
T 3qe7_A 153 --T--PDSKTIIISITTLAVTVLGSVLFRGFLA-----IIPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPTLYTP 221 (429)
T ss_dssp --C--CCHHHHHHHHHHHHHHHHHHHSSSTTTT-----THHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCCCCCC
T ss_pred --c--ccHHHHHHHHHHHHHHHHHHHHhcccch-----hhHHHHHHHHHHHHHHHhcCCC--cccccccccccccCCCCC
Confidence 1 5677889999999888888776666543 2379999999999999988532 22233332 346666666
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC----ccCCchhHHHHhHHHHHhhhcCCccCCCccchhhhh
Q 009895 192 QLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGY----HLDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVN 267 (523)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~ 267 (523)
+++| ..+ ...+.++++.++|++.+..+.++..++ +.+.|||+.++|++|+++|+||++|.+++..++++.
T Consensus 222 ~f~~--~~i----~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i 295 (429)
T 3qe7_A 222 RFEW--FAI----LTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVM 295 (429)
T ss_dssp CCCH--HHH----HHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHH
T ss_pred cccH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHH
Confidence 5443 333 334567788889999988888877764 457899999999999999999999999766666778
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHH--HhhHhhhhhhHHHHHHHHHHhcccCCHHHHHhh--hhcCc---hhHHHHHHHHH
Q 009895 268 FSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINI--YKVDK---LDFLACIGAFL 340 (523)
Q Consensus 268 ~~~Ga~t~~s~i~~~~~~l~~~~~--~~~ll~~iP~~vla~ili~~~~~l~~~~~~~~~--~~~~~---~d~~v~~~t~~ 340 (523)
..+|++||++.+++|++++++.++ ++++++.||.+++||+.++ .+.++....+|.+ .|.+. ++..+..+++.
T Consensus 296 ~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~ 374 (429)
T 3qe7_A 296 AITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYNKAQNLILTSVILI 374 (429)
T ss_dssp HHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Confidence 889999999999999988877654 6789999999999998765 8899999999988 67664 34455444443
Q ss_pred H
Q 009895 341 G 341 (523)
Q Consensus 341 ~ 341 (523)
.
T Consensus 375 ~ 375 (429)
T 3qe7_A 375 I 375 (429)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.92 E-value=4.4e-25 Score=195.62 Aligned_cols=142 Identities=25% Similarity=0.413 Sum_probs=125.5
Q ss_pred CcCeEEeeecCCCCcccCCCCCCCccCCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEec
Q 009895 368 RPGIELQGRLPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMS 447 (523)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s 447 (523)
||++.++|+.|+++.|++++++++.++.+++.+++++|+ |||+|+++|++.+.+.+++.. .++.+.+||||+
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~-L~f~~a~~~~~~l~~~~~~~~-------~~~~~~vvlDls 72 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAP-IYYANSDLYSSALKRKTGVNG-------SENIHTVILDFT 72 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSC-HHHHHHHHHHHC------------------CCSEEEEECT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCC-eEechHHHHHHHHHHHHccCC-------CCCceEEEEECC
Confidence 689999999999999999999999999999999999999 999999999999988764210 135789999999
Q ss_pred CCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccC-CcccccCHHHHHHHHhhccc
Q 009895 448 NSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIG-KGCVYLSVAEAMEACLTSKF 517 (523)
Q Consensus 448 ~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~-~~~if~s~~~Al~~~~~~~~ 517 (523)
+|++|||||+++|.++.++++++|++++++++++++++.|+++|+.+.++ +.++|+|++||+++++++|.
T Consensus 73 ~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~~~~ 143 (143)
T 3llo_A 73 QVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVREA 143 (143)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHTSSCCC
T ss_pred CCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccCccceEECcHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999887 77899999999999998763
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.86 E-value=3.2e-22 Score=174.08 Aligned_cols=124 Identities=22% Similarity=0.322 Sum_probs=114.7
Q ss_pred CCCcccCCCCCCCccCCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHH
Q 009895 379 RTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGIL 458 (523)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~ 458 (523)
+++.|+++++++..+..+++.+++++|+ |||+|+++|++.+.+ +. ++.+.+|+||++|++||+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~-L~f~~a~~~~~~l~~-~~-----------~~~~~vvlDls~v~~iDssgl~ 68 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGP-FFFAAAETFERVMGS-IQ-----------ETPQILILRLKWVPFMDITGIQ 68 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSS-CCHHHHHHHHHHHHH-SS-----------SCCSEEEEECTTCCCCCHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeee-EeehhHHHHHHHHHH-hc-----------cCCCEEEEECCCCCcccHHHHH
Confidence 4567888999999999999999999999 999999999999864 22 3468999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 459 VLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 459 ~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
+|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|.+||+++++++
T Consensus 69 ~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~~ 125 (130)
T 4dgh_A 69 TLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTE 125 (130)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999889999999999999864
No 4
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.86 E-value=7.8e-22 Score=171.63 Aligned_cols=125 Identities=26% Similarity=0.536 Sum_probs=113.8
Q ss_pred ccCCCCCCCccCCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHH
Q 009895 383 YGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEE 462 (523)
Q Consensus 383 ~~~~~~~~~~~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~ 462 (523)
|++++++|+.++.+++.+++++|+ |||+|+++|++.+.+.+.+. +++.+.+||||++|++|||||+++|.+
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~-L~f~~a~~~~~~l~~~~~~~--------~~~~~~vvlDls~v~~iDssgl~~L~~ 71 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAP-LCFANAEDFRRRALTVVDQD--------PGQVEWFVLNAESNVEVDLTALDALDQ 71 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSC-CBTTTHHHHHHHHHHHTTSS--------SSCCEEEEEECSCCSSSBCSTTTHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCc-eEechHHHHHHHHHHHHhcC--------CCCceEEEEECCCCChhhHHHHHHHHH
Confidence 567888888888999999999999 99999999999998866421 015789999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhcc
Q 009895 463 LHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSK 516 (523)
Q Consensus 463 ~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~ 516 (523)
+.++++++|++++++++++++++.|+++|+.+.+++.++|+|.+||+++++.+.
T Consensus 72 ~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~ 125 (130)
T 2kln_A 72 LRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLPTAVQAFRRRH 125 (130)
T ss_dssp HHHHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTTC-
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcceeECCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999988899999999999998654
No 5
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.85 E-value=7e-22 Score=173.09 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=108.4
Q ss_pred ecCCCCcccCCCCCCCccCCC-cEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccCh
Q 009895 376 RLPRTDTYGDISQFPMAIKTP-GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDT 454 (523)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~-~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDs 454 (523)
++|+++.|++++++ +.++.+ ++.+++++|+ |||+|+++|++++.+ +. ++.+.+|+||++|++||+
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~-L~f~~a~~~~~~l~~-~~-----------~~~~~vvlDls~v~~iDs 67 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGP-FFFGVADRLKGVLDV-IE-----------ETPKVFILRMRRVPVIDA 67 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSS-BSHHHHHHHTTGGGG-CS-----------SCCSEEEEECTTCSCBCH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeece-EEehhHHHHHHHHHH-hc-----------CCCcEEEEEcCCCCccCH
Confidence 46889999999998 555555 9999999999 999999999999864 21 456899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 455 SGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 455 sgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
||+++|.++.++++++|+++++++++++++++|+++|+.+.++++++|+|.++|++++++.
T Consensus 68 sgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~ 128 (135)
T 4dgf_A 68 TGMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLL 128 (135)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999889999999999999864
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.78 E-value=3.9e-19 Score=151.65 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=96.2
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
..+++.+++++|+ |||+|+++|++++.+.. ++.+.+|+||++|++||+||+++|.++.+++++ |++
T Consensus 14 ~~~~v~v~~l~G~-L~f~~a~~l~~~l~~~~------------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~ 79 (118)
T 3ny7_A 14 VPDDVLVLRVIGP-LFFAAAEGLFTDLESRL------------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCE 79 (118)
T ss_dssp CCTTEEEEEEESC-BCHHHHHHHHHHHHTTC------------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCE
T ss_pred CCCCEEEEEEece-eEehhHHHHHHHHHHhc------------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCE
Confidence 4578999999999 99999999999987532 246899999999999999999999999999999 999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHH
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEA 511 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~ 511 (523)
++++++++++++.|+++|+.+.++++++|+|.+||+++
T Consensus 80 l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 80 LRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp EEEECCCHHHHHHHHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred EEEecCCHHHHHHHHHcCChhhcChhhhcCCHHHHHhh
Confidence 99999999999999999999999988999999999854
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.72 E-value=1.7e-17 Score=142.95 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=98.5
Q ss_pred ccCCCcEEEEEECCCceeEechHHHHHHHHH-HHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhC
Q 009895 392 AIKTPGILTIRINSALFCFANANFIRERIMR-WVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASN 470 (523)
Q Consensus 392 ~~~~~~i~ii~l~G~~L~f~n~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~ 470 (523)
.+..+++.+++++|+ |+|+|+++|++.+.+ .+. .+.+.+++||++|+||||||+++|.++.++++++
T Consensus 16 ~~~~~~~~vv~l~G~-Ld~~~a~~l~~~l~~~~~~-----------~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~ 83 (125)
T 2ka5_A 16 YKIVDDVVILMPNKE-LNIENAHLFKKWVFDEFLN-----------KGYNKIFLVLSDVESIDSFSLGVIVNILKSISSS 83 (125)
T ss_dssp EEECSSCEEECCCSC-CSGGGTHHHHHHHHHHTTT-----------TTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred ceeeCCEEEEEEecE-EecccHHHHHHHHHHHHhh-----------CCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHc
Confidence 455678999999999 999999999999987 554 2467999999999999999999999999999999
Q ss_pred CCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 471 GIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 471 g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
|+++.++++++++++.|+++|+.+.+ .+|+|.+||+++++.
T Consensus 84 g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~s~~~Al~~~~~ 124 (125)
T 2ka5_A 84 GGFFALVSPNEKVERVLSLTNLDRIV---KIYDTISEAMEEVRR 124 (125)
T ss_dssp TCEEEEECCCHHHHHHHHHTTSTTTS---EEESSHHHHHTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHcCCCceE---EecCCHHHHHHHhhc
Confidence 99999999999999999999999988 599999999987753
No 8
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.70 E-value=2e-17 Score=141.72 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=97.4
Q ss_pred cCCCcEEEEEECCCce---eEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHh
Q 009895 393 IKTPGILTIRINSALF---CFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLAS 469 (523)
Q Consensus 393 ~~~~~i~ii~l~G~~L---~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~ 469 (523)
++.+++.+++++|+ + ||.|+++|++++.+.+.+ .+.+.+++||++|+||||+|+++|.++++++++
T Consensus 10 ~~~~~~~vv~l~G~-l~~ld~~~~~~l~~~l~~~l~~----------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~ 78 (121)
T 3t6o_A 10 THEAQVTVISFPAV-FQRLRETEVEQIASTFLAAMQG----------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKE 78 (121)
T ss_dssp EEETTEEEEECCGG-GSEECHHHHHHHHHHHHHTTCC----------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTT
T ss_pred EEECCEEEEEEccc-cccCchhhHHHHHHHHHHHHhh----------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHH
Confidence 44578999999999 8 899999999999775532 346899999999999999999999999999999
Q ss_pred -CCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 470 -NGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 470 -~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
+|+++.+++++++++++|+++|+.+.+ .+|+|.+||++++.
T Consensus 79 ~~g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 120 (121)
T 3t6o_A 79 DQQGVFALCSVSPYCVEVLQVTHIDEVW---PRYSTKQEALLAMA 120 (121)
T ss_dssp STTCEEEEESCCHHHHHHHTTCSGGGGS---CEESSHHHHHHHTC
T ss_pred hcCCEEEEEeCCHHHHHHHHHhCcccee---cccCCHHHHHHHhc
Confidence 999999999999999999999999998 59999999998764
No 9
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.69 E-value=3.2e-17 Score=139.60 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=96.4
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
+.+++.+++++|+ ++|.|+++|++.+.+.++ ... .+++||++|+||||+|+++|.++.++++++|++
T Consensus 10 ~~~~~~v~~l~G~-ld~~~~~~l~~~l~~~~~-----------~~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 76 (117)
T 4hyl_A 10 TEQGIDIITLHGH-LDTRSSPAVQAAVLPRVT-----------AKG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGA 76 (117)
T ss_dssp EETTEEEEEEEEE-ECSSSHHHHHHHHGGGCC-----------TTC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCE
T ss_pred EECCEEEEEEEeE-EcchhHHHHHHHHHHHHc-----------cCC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 4468999999999 999999999999987543 223 999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
+.+++++++++++|+.+|+.+.+ .+|+|.+||+++++.+
T Consensus 77 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~~ 115 (117)
T 4hyl_A 77 LVLVGVSEEIRDTMEITGFWNFF---TACASMDEALRILGSE 115 (117)
T ss_dssp EEEECCCHHHHHHHHHHTCGGGC---EEESCHHHHHHHHCC-
T ss_pred EEEEeCCHHHHHHHHHhCcccee---eecCCHHHHHHHhccC
Confidence 99999999999999999999988 5999999999998654
No 10
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.68 E-value=5.6e-17 Score=137.67 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=97.8
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
+.+++.+++++|+ ++|.|++++++.+.+.+.+ .+.+.+++|+++|+++|++|+++|.++.++++++|++
T Consensus 9 ~~~~~~vv~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 77 (116)
T 1th8_B 9 VKQDVLIVRLSGE-LDHHTAEELREQVTDVLEN----------RAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQ 77 (116)
T ss_dssp EETTEEEEEEEEE-ESHHHHHHHHHHHHHHHHS----------SCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCC
T ss_pred EECCEEEEEEeee-eccccHHHHHHHHHHHHhc----------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCe
Confidence 3467899999999 9999999999999886642 2367999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
+.++++++++++.|+.+|+.+.+ ++|+|.+||+++++.
T Consensus 78 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~ 115 (116)
T 1th8_B 78 MVVCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALGV 115 (116)
T ss_dssp EEEESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHHhCCceeE---EEeCCHHHHHHhccC
Confidence 99999999999999999999988 699999999998763
No 11
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.67 E-value=1.1e-16 Score=136.24 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=96.6
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
+.+++.+++++|+ ++|.|+++|++.+.+.+.+ ++.+.+++|+++|+++||+|+++|.+++++++++|++
T Consensus 8 ~~~~~~vl~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 76 (117)
T 1h4x_A 8 VTRETVVIRLFGE-LDHHAVEQIRAKISTAIFQ----------GAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGR 76 (117)
T ss_dssp EETTEEEEEEEEE-ECHHHHHHHHHHHHHHHHH----------TSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCE
T ss_pred eeCCEEEEEEEeE-EchhhHHHHHHHHHHHHhc----------CCCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCE
Confidence 3467899999999 9999999999999886642 2357899999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhcc
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSK 516 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~ 516 (523)
+.++++++++++.|+.+|+.+.+ +|+|.+||++++++-+
T Consensus 77 l~l~~~~~~v~~~l~~~gl~~~~----i~~~~~~Al~~~~~~~ 115 (117)
T 1h4x_A 77 TILLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRVRGIV 115 (117)
T ss_dssp EEEESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHTC---
T ss_pred EEEEeCCHHHHHHHHHhCCceEE----EeCCHHHHHHHHHHhh
Confidence 99999999999999999999877 8999999999887544
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.65 E-value=6.1e-16 Score=129.84 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=92.1
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
+.+++.+++++|+ ++|.|++++++.+.+.+.+ .+.+.+++|+++|+++|++|+++|.++.++++++|++
T Consensus 10 ~~~~~~vv~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 78 (110)
T 1sbo_A 10 EQDDKAIVRVQGD-IDAYNSSELKEQLRNFIST----------TSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKE 78 (110)
T ss_dssp ECSSEEEEEEESC-BSTTTTTHHHHHHHTHHHH----------CSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCE
T ss_pred EeCCEEEEEEeeE-EccccHHHHHHHHHHHHhc----------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCE
Confidence 4568999999999 9999999999999876642 2347899999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHH
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEA 508 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~A 508 (523)
+.++++++++++.|+.+|+.+.++ +|+|.+||
T Consensus 79 l~l~~~~~~v~~~l~~~gl~~~~~---i~~~~~~A 110 (110)
T 1sbo_A 79 FILSSLKESISRILKLTHLDKIFK---ITDTVEEA 110 (110)
T ss_dssp EEEESCCHHHHHHHHHTTCGGGSC---BCSSGGGC
T ss_pred EEEEeCCHHHHHHHHHhCccceee---ccCCcccC
Confidence 999999999999999999999884 99999886
No 13
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.56 E-value=2.1e-14 Score=123.00 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=97.3
Q ss_pred cEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEE
Q 009895 397 GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVM 476 (523)
Q Consensus 397 ~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l 476 (523)
++.++.+.|+ +|..+++++++++.+.+.+ .+.+.+|+|+++|+++||+|++.|.+.++.++..|+++++
T Consensus 12 ~vlvv~l~G~-lD~~~a~~l~~~ll~~i~~----------~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l 80 (123)
T 3zxn_A 12 DYWVVAIEET-LHDQSVIQFKEELLHNITG----------VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVL 80 (123)
T ss_dssp TEEEEECCCC-C-CHHHHHHHHHHHHHHTS----------SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CEEEEEEeEe-eCHHHHHHHHHHHHHHHHh----------cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999 9999999999999887753 4578999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHCCCc-cccCCcccccCHHHHHHHHhhcccc
Q 009895 477 ASPRWQVIHKLKSAKLL-DRIGKGCVYLSVAEAMEACLTSKFA 518 (523)
Q Consensus 477 ~~~~~~v~~~l~~~gl~-~~~~~~~if~s~~~Al~~~~~~~~~ 518 (523)
++++|++.+.|..+|+. +.+ .+|+|.++|++.++...++
T Consensus 81 ~Gi~p~va~~l~~~G~~l~~i---~~~~~l~~Al~~l~~~~~~ 120 (123)
T 3zxn_A 81 TGIKPAVAITLTEMGLDLRGM---ATALNLQKGLDKLKNLARM 120 (123)
T ss_dssp ECCCHHHHHHHHHTTCCSTTS---EEESSHHHHHHHHHHHHTC
T ss_pred EcCCHHHHHHHHHhCCCccce---EEECCHHHHHHHHHHhhhh
Confidence 99999999999999996 555 6999999999998765443
No 14
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.56 E-value=7.6e-16 Score=126.82 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=73.2
Q ss_pred CCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEE
Q 009895 395 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIEL 474 (523)
Q Consensus 395 ~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l 474 (523)
.+++.+++++|+ |||+|+++|++++.. .++++.+|+||++|+|||+||+++|.++.++++++|+++
T Consensus 14 ~g~~~v~~l~G~-L~f~~a~~~~~~l~~-------------~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 79 (99)
T 3oiz_A 14 DGRERIYRVEGQ-LFYASVEDFMAAFDF-------------REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEV 79 (99)
T ss_dssp TSSEEEEEEEEE-ECGGGHHHHHHTCCT-------------TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEEEeeE-EehhhHHHHHHHHhh-------------cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEE
Confidence 346899999999 999999999999852 145689999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHCCCc
Q 009895 475 VMASPRWQVIHKLKSAKLL 493 (523)
Q Consensus 475 ~l~~~~~~v~~~l~~~gl~ 493 (523)
.+++++++++++|+++|+.
T Consensus 80 ~l~~~~~~v~~~l~~~g~~ 98 (99)
T 3oiz_A 80 RIVGMNEASETMVDRLAIH 98 (99)
T ss_dssp EEESHHHHHTTCC------
T ss_pred EEEcCCHHHHHHHHHhcCC
Confidence 9999999999999999874
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=96.28 E-value=0.0059 Score=61.45 Aligned_cols=84 Identities=15% Similarity=0.341 Sum_probs=67.2
Q ss_pred CcEEEEEECCCceeEechHHHHHHHHHHHHhhh-------------------hh-------------------hhhhccC
Q 009895 396 PGILTIRINSALFCFANANFIRERIMRWVTEEQ-------------------DE-------------------LEETTKR 437 (523)
Q Consensus 396 ~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~-------------------~~-------------------~~~~~~~ 437 (523)
+++.+++++|. +.|+.++.+.+++.+.....+ ++ .....+.
T Consensus 324 ~~~~~~~l~g~-~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (456)
T 3agd_A 324 GDRVFLHLQGV-IRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDG 402 (456)
T ss_dssp TTEEEEEEEEE-ESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCC
T ss_pred CcEEEEEeece-echhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 46999999999 999999999998887511000 00 0011235
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR 480 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 480 (523)
+.+.||+|+++|+.+|-.|.+++.+..++++..|.++++..+.
T Consensus 403 ~~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 445 (456)
T 3agd_A 403 PIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE 445 (456)
T ss_dssp CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 6789999999999999999999999999999999999999876
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=95.20 E-value=0.024 Score=47.51 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=70.4
Q ss_pred CCcEEEEEECC--CceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCC
Q 009895 395 TPGILTIRINS--ALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGI 472 (523)
Q Consensus 395 ~~~i~ii~l~G--~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~ 472 (523)
.+++..+++.| . ++-..+..+-..+.+ +.+ .+...+++|++....++..+-+.+.+-. .=-
T Consensus 18 ~dGIl~~~~~~~~~-i~~e~A~~~~~~~~~-l~~----------~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~ 80 (124)
T 3bl4_A 18 GDGILRLTWPRGAA-ITAADAERAMLRVNQ-LCG----------DDRHPMLVDMATTADVSRGARAVFGRPC-----QAS 80 (124)
T ss_dssp TTSCEEEECSSSSC-CCHHHHHHHHHHHHH-HHT----------TCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEE
T ss_pred CCCEEEEEEcCCCc-cCHHHHHHHHHHHHH-HhC----------CCceEEEEEcccccCCCHHHHHHHhCcc-----cee
Confidence 37899999999 6 565566666666555 221 3468999999999889999988887722 234
Q ss_pred EEEEEcCCHHHHHHHHH-CCCccccCCcccccCHHHHHHHHhh
Q 009895 473 ELVMASPRWQVIHKLKS-AKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 473 ~l~l~~~~~~v~~~l~~-~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
.+.+.+.++-.+.+-+. .++...-.+.++|.|++||++|+++
T Consensus 81 a~Al~g~s~~~r~ia~~~l~~~~~~~pt~fF~te~eA~aWL~~ 123 (124)
T 3bl4_A 81 RIALLGSSPVDRVLANFFLGINAVPCPTKFFTSERDALTWLAL 123 (124)
T ss_dssp EEEEECSSGGGHHHHHHHHHHHCCSSCEEEESCHHHHHHHHTC
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCCCCceeeCCHHHHHHHHHh
Confidence 57777777644433221 2333333445899999999999864
No 17
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=92.02 E-value=0.24 Score=41.48 Aligned_cols=109 Identities=7% Similarity=-0.024 Sum_probs=71.0
Q ss_pred CCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEE
Q 009895 395 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIEL 474 (523)
Q Consensus 395 ~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l 474 (523)
.+++..++++|. ++-...+++...+++.++++. .+.-.+.+|++.....+..++--=.++-....++=-++
T Consensus 18 ~~~vl~v~~~G~-lt~~d~~~l~~~l~~~l~~~~--------~~~i~ll~~~~~f~G~~~~a~~~d~k~~~~h~~~~~Ri 88 (126)
T 2q3l_A 18 DDFYLAFKAVGK-LTHEDYEQMTPLLESALAGIK--------TPEIVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRV 88 (126)
T ss_dssp TEEEEEEEEEEE-ECHHHHHHHHHHHHHHTTTCC--------SSCEEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEEEEee-ECHHHHHHHHHHHHHHHHhCC--------CceEEEEEEecCCCCCCHHHHHHHHHhhhhHHhcCCEE
Confidence 346899999999 766655566666665555321 12257888999888888665443222222333344688
Q ss_pred EEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 475 VMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 475 ~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.+++-++=++...+..+..-. ++.+.|++.++|.+|++
T Consensus 89 AvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl~ 126 (126)
T 2q3l_A 89 AIIGQGELQEWATRVANWFTP-GEFKFFEDKRDALDWLC 126 (126)
T ss_dssp EEECCSHHHHHHHHHHHHHCS-SEEEEESCHHHHHHHHC
T ss_pred EEEcChHHHHHHHHHHhhccC-CceeccCCHHHHHHHhC
Confidence 888888767766666554421 24478899999999973
No 18
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=80.19 E-value=35 Score=34.60 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=68.4
Q ss_pred cCCchhHHHHhHHHHHhhhcCCccCCCccchhhhh----hhcCCCcch-----hHHHHHHHHHHHHHHHh-----hHhhh
Q 009895 233 LDGNKEMVAMGFMNIVGSLTSCYVATGSFSRTAVN----FSAGCQTVV-----SNIVMAITVLLSLELFT-----SLLYY 298 (523)
Q Consensus 233 ~~~n~el~a~G~aNivs~lfGg~p~~~~~s~s~~~----~~~Ga~t~~-----s~i~~~~~~l~~~~~~~-----~ll~~ 298 (523)
.|++..+++-|++.++=+++++.+.-...+-|-.. ...+. ..+ +.+++|++.+++.+++. .+.++
T Consensus 41 l~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~ 119 (429)
T 3qe7_A 41 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVL 119 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35568999999999999988654422111111110 11111 223 33334444444443322 58889
Q ss_pred hhhHHHHHHHHHHhcccCCHHHHHhhh-------hcCchhHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHH
Q 009895 299 TPIAILASIILSALPGLIDINEAINIY-------KVDKLDFLACIGAFLGVLFA-----------SVEIGLLAAVTISFA 360 (523)
Q Consensus 299 iP~~vla~ili~~~~~l~~~~~~~~~~-------~~~~~d~~v~~~t~~~~~~~-----------~~~~gi~~Gi~~s~~ 360 (523)
+|..+.|.++..+|+.+.... ++..- ..+..++.+.+++++.+++. .+.+|+++|.+++..
T Consensus 120 ~PpvviG~~i~~IGl~l~~~~-~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg~~~~~aiLigivvg~~~a~~ 198 (429)
T 3qe7_A 120 FPPAAMGAIVAVIGLELAGVA-AGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFA 198 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCeeeHHHHHHHHHHHHHHH-HHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 999999999999898875221 11111 01224455666666655543 445555555555443
No 19
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=70.58 E-value=6.2 Score=35.31 Aligned_cols=60 Identities=2% Similarity=-0.059 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCC-CEEEEEcCCHHHHHHHHH--------CCC------ccccCCcccccCHHHHHHHHhhccccc
Q 009895 460 LEELHKKLASNG-IELVMASPRWQVIHKLKS--------AKL------LDRIGKGCVYLSVAEAMEACLTSKFAA 519 (523)
Q Consensus 460 L~~~~~~~~~~g-~~l~l~~~~~~v~~~l~~--------~gl------~~~~~~~~if~s~~~Al~~~~~~~~~~ 519 (523)
+-++.+.+|.-| .+++++++.+..++.-++ .|- .|.+..-++++|++||++.|++++.+.
T Consensus 31 ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~~~~~~g~~ 105 (192)
T 3dcm_X 31 VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGER 105 (192)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHHHHhhcCCc
Confidence 456778888888 789999998755443322 222 345566689999999999998654443
No 20
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=67.28 E-value=20 Score=29.34 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=55.0
Q ss_pred cEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCC-ccChHHHHHHHHHHHHHHhCCCEEE
Q 009895 397 GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSM-NIDTSGILVLEELHKKLASNGIELV 475 (523)
Q Consensus 397 ~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~-~iDssgl~~L~~~~~~~~~~g~~l~ 475 (523)
...++++.. .+.+.+++.+.+.+++.. .--.-..||||++.+. ..| +..+.+.++++|..++
T Consensus 16 ~l~vl~l~~-----~d~~~l~~~L~~ki~~aP------~FF~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 16 TLSVVHLHE-----AEPEVIRQALEDKIAQAP------AFLKHAPVVINVSGLESPVN------WPELHKIVTSTGLRII 78 (120)
T ss_dssp CCEEEEEES-----CCHHHHHHHHHHHHHHSH------HHHTTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEE
T ss_pred eEEEEEeCC-----CCHHHHHHHHHHHHHhCh------HhhCCCcEEEEccccCChHH------HHHHHHHHHHcCCEEE
Confidence 355666543 347788888888776542 1123468999999886 334 6667788899998775
Q ss_pred -EEcCCHH-HHHHHHHCCCc
Q 009895 476 -MASPRWQ-VIHKLKSAKLL 493 (523)
Q Consensus 476 -l~~~~~~-v~~~l~~~gl~ 493 (523)
+.+.+++ .++..+..|+-
T Consensus 79 GV~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 79 GVSGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp EEESCCCHHHHHHHHHHTCC
T ss_pred EEeCCCcHHHHHHHHHCCCC
Confidence 5555644 88888888885
No 21
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=66.43 E-value=15 Score=33.92 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=41.7
Q ss_pred CceEEEEEecCCCccChH-HHHHHHHHHHHHHhCCCEEEEE-----cCCHHHHHHHHHCCCc
Q 009895 438 TIQAVIIDMSNSMNIDTS-GILVLEELHKKLASNGIELVMA-----SPRWQVIHKLKSAKLL 493 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDss-gl~~L~~~~~~~~~~g~~l~l~-----~~~~~v~~~l~~~gl~ 493 (523)
.+|.+++|+.++- +|+. ...--.+..++++++|++++++ .....+.+.++..|+.
T Consensus 5 ~~kli~~DlDGTL-l~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTM-YNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CCSEEEEECSSST-TCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEeCcCce-EeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4789999999984 4542 2334467778899999999999 4456788888888885
No 22
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=63.78 E-value=0.2 Score=42.05 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=65.8
Q ss_pred CCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHH--HHHHhCCC
Q 009895 395 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELH--KKLASNGI 472 (523)
Q Consensus 395 ~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~--~~~~~~g~ 472 (523)
.+++..++++|. ++-...+++...+++.+++.+ .++++ +.+|++.....+..++-- ++. .+..++=-
T Consensus 18 ~~~vl~v~~~G~-lt~eD~~~l~~~i~~~l~~~~-------~~~i~-lL~~~~~f~G~~~~A~~~--d~k~~~~h~~~~~ 86 (127)
T 2ook_A 18 SVFFVTLKAIGT-LTHEDYLVITPMLEGALSQVD-------QPKVS-LFLDATELDGWDLRAAWD--DLKLGLKHKSEFE 86 (127)
T ss_dssp TEEEEEEEEEEE-ECHHHHHHHHHHHHHHHTTCC-------CSSCC-EEEEEEEEEEECTTCGGG--GCCCCCTTSCCEE
T ss_pred CCCEEEEEEeee-ECHHHHHHHHHHHHHHHhhcc-------CCCEE-EEEEccCCCCCCHHHHHH--HHHhhhhhHhcCC
Confidence 356899999999 766666666666666555300 13444 899999888888544321 111 11111235
Q ss_pred EEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 473 ELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 473 ~l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
++.+++-++=++...+..+..-. ++.+.|++.++|.+|++
T Consensus 87 RiAvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl~ 126 (127)
T 2ook_A 87 RVAILGNKDWQEWAAKIGSWFIA-GEIKYFEDEDDALKWLR 126 (127)
T ss_dssp EEEEECCSSCCTTTTTGGGGCCE-EEEEEESCHHHHHHHHH
T ss_pred EEEEEcChHHHHHHHHHHhhCcC-CceEccCCHHHHHHHHh
Confidence 77787776655555544444311 24589999999999986
No 23
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=63.13 E-value=42 Score=34.30 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=54.7
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCc--cC--hHHHHHHHHHHHHHHhCCCEEEEEcC----CHH
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMN--ID--TSGILVLEELHKKLASNGIELVMASP----RWQ 482 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~--iD--ssgl~~L~~~~~~~~~~g~~l~l~~~----~~~ 482 (523)
.+.+.+++.++..+++ ++.+.+++++..-.+ .+ ..+ +.+.+..++.+ .+..++.+.+ .++
T Consensus 351 a~~~~~~~al~~~l~d----------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~~~~g~~~~~ 418 (457)
T 2csu_A 351 ARGEDYYRTAKLLLQD----------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAMFMAGYVSEK 418 (457)
T ss_dssp CCHHHHHHHHHHHHHS----------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEEEECTTTTHH
T ss_pred CCHHHHHHHHHHHhcC----------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEEeCCCcchHH
Confidence 5677888888876663 667888888853323 33 322 44444445543 5566666443 356
Q ss_pred HHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 483 VIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 483 v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.++.|+..|+ .+|+|.++|++++.
T Consensus 419 ~~~~L~~~Gi-------p~~~spe~Av~al~ 442 (457)
T 2csu_A 419 AKELLEKNGI-------PTYERPEDVASAAY 442 (457)
T ss_dssp HHHHHHTTTC-------CEESSHHHHHHHHH
T ss_pred HHHHHHhCCC-------CccCCHHHHHHHHH
Confidence 7888888775 48999999988764
No 24
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=55.91 E-value=41 Score=30.97 Aligned_cols=68 Identities=6% Similarity=0.096 Sum_probs=47.8
Q ss_pred CcEEEEEECCCceeEe------------chHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHH
Q 009895 396 PGILTIRINSALFCFA------------NANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEEL 463 (523)
Q Consensus 396 ~~i~ii~l~G~~L~f~------------n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~ 463 (523)
+++.+++++|. +.-. +.+++.+.++++-+ +++.|.|+|+... ..-|.++.+.+.+.
T Consensus 3 ~~iavi~i~G~-I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~i~~~ 70 (240)
T 3rst_A 3 SKIAVLEVSGT-IQDNGDSSSLLGADGYNHRTFLKNLERAKD----------DKTVKGIVLKVNS-PGGGVYESAEIHKK 70 (240)
T ss_dssp CEEEEEEEESC-BCCC---------CCCCHHHHHHHHHHHHH----------CTTEEEEEEEEEE-CCBCHHHHHHHHHH
T ss_pred CeEEEEEEEEE-EcCCCCcCcccccCCcCHHHHHHHHHHHHh----------CCCcEEEEEEecC-CCCCHHHHHHHHHH
Confidence 46888888888 7643 34566666655432 3678999998864 56788888888888
Q ss_pred HHHHHh-CCCEEE
Q 009895 464 HKKLAS-NGIELV 475 (523)
Q Consensus 464 ~~~~~~-~g~~l~ 475 (523)
.+++++ .+..++
T Consensus 71 l~~~~~~~~kPVi 83 (240)
T 3rst_A 71 LEEIKKETKKPIY 83 (240)
T ss_dssp HHHHHHHHCCCEE
T ss_pred HHHHHHhCCCeEE
Confidence 888877 455543
No 25
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=53.69 E-value=21 Score=28.66 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=39.9
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCcccc
Q 009895 439 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRI 496 (523)
Q Consensus 439 ~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~ 496 (523)
.|.+++|+.++=.=+..-..-..++.++++++|.++.++.-+ ..+++.++..|+.+.+
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f 61 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVV 61 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSS
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhc
Confidence 478999998865333344455777888999999998877653 4456667776655444
No 26
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=50.65 E-value=21 Score=32.84 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=40.5
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCc
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLL 493 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~ 493 (523)
.+|.+++|+.++-.=+..-..--.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 7 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CCSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 478999999987543322222345667888999999999944 45678888888885
No 27
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=46.74 E-value=94 Score=30.97 Aligned_cols=84 Identities=7% Similarity=0.161 Sum_probs=54.9
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEe-cCCCccChHHHHHHHHHHHHHHhCCCE--EEEEcCCHH-HHHH
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDM-SNSMNIDTSGILVLEELHKKLASNGIE--LVMASPRWQ-VIHK 486 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~-s~v~~iDssgl~~L~~~~~~~~~~g~~--l~l~~~~~~-v~~~ 486 (523)
++.+++++.++-.++ +++.+.++++. .++...|.-+ +.+.+..+++. .+.. +.+.+.+.+ -+++
T Consensus 300 a~~e~~~~al~~il~----------d~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~~ 367 (395)
T 2fp4_B 300 VKESQVYQAFKLLTA----------DPKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQNI 367 (395)
T ss_dssp CCHHHHHHHHHHHHH----------CTTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHHH
T ss_pred CCHHHHHHHHHHHhC----------CCCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHH
Confidence 566667766665554 36678888876 6777767666 55555555552 3444 445566654 7788
Q ss_pred HHHCCCccccCCcccc--cCHHHHHHHHh
Q 009895 487 LKSAKLLDRIGKGCVY--LSVAEAMEACL 513 (523)
Q Consensus 487 l~~~gl~~~~~~~~if--~s~~~Al~~~~ 513 (523)
|+.+|+ .+| +|.++|.+.+-
T Consensus 368 L~~~gl-------~~~~~~~~~~Aa~~~v 389 (395)
T 2fp4_B 368 LTNSGL-------PITSAVDLEDAAKKAV 389 (395)
T ss_dssp HHHTCS-------CCEECSSHHHHHHHHH
T ss_pred HHHCCC-------ceEeCCCHHHHHHHHH
Confidence 888875 255 99999987653
No 28
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=44.18 E-value=18 Score=33.54 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=47.7
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc---C--CHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS---P--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~---~--~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.+|.+++|+.++-.-+...+.--.+..++++++|++++++. . ...+.+.++..|+.. ..+.++.+...+.+..
T Consensus 4 ~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~--~~~~ii~~~~~~~~~l 81 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVET--PLETIYTATMATVDYM 81 (264)
T ss_dssp CCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCC--CGGGEEEHHHHHHHHH
T ss_pred CCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhheecHHHHHHHHH
Confidence 47899999999844333323334466678888999999998 2 356778888888742 2224444444444444
Q ss_pred h
Q 009895 513 L 513 (523)
Q Consensus 513 ~ 513 (523)
+
T Consensus 82 ~ 82 (264)
T 3epr_A 82 N 82 (264)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=41.28 E-value=39 Score=31.00 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=42.8
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
..+++.++.++|. ++-..++++.+.++++-+ ++.+.++|....-. =|.+ ...++++.+++....
T Consensus 6 ~~~~V~vI~i~g~-I~~~~~~~l~~~l~~a~~-----------~~~~~Ivl~inspG-G~v~---~~~~i~~~i~~~~~P 69 (230)
T 3viv_A 6 AKNIVYVAQIKGQ-ITSYTYDQFDRYITIAEQ-----------DNAEAIIIELDTPG-GRAD---AMMNIVQRIQQSKIP 69 (230)
T ss_dssp CCCEEEEEEEESC-BCHHHHHHHHHHHHHHHH-----------TTCSEEEEEEEBSC-EEHH---HHHHHHHHHHTCSSC
T ss_pred CCCeEEEEEEeCE-ECHHHHHHHHHHHHHHhc-----------CCCCEEEEEEeCCC-cCHH---HHHHHHHHHHhCCCC
Confidence 3457999999999 998888888888876422 34678888764322 2222 334555556655555
Q ss_pred EE
Q 009895 474 LV 475 (523)
Q Consensus 474 l~ 475 (523)
++
T Consensus 70 Vi 71 (230)
T 3viv_A 70 VI 71 (230)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 30
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=39.53 E-value=15 Score=32.70 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=49.1
Q ss_pred CceEEEEEecCCC-----ccChHHHHHHHHH-------HHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCccccc
Q 009895 438 TIQAVIIDMSNSM-----NIDTSGILVLEEL-------HKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYL 503 (523)
Q Consensus 438 ~~~~vIlD~s~v~-----~iDssgl~~L~~~-------~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~ 503 (523)
..+.+++|+.++- +.+..+ ..+.++ .+.++++|+++.++.- .+.+++.++..|+.+.+.. ..
T Consensus 24 ~ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~---~k 99 (195)
T 3n07_A 24 QIKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG---QD 99 (195)
T ss_dssp TCCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS---CS
T ss_pred CCCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC---CC
Confidence 4789999998752 222221 122233 6888999999988875 5678899999999877642 25
Q ss_pred CHHHHHHHHhh
Q 009895 504 SVAEAMEACLT 514 (523)
Q Consensus 504 s~~~Al~~~~~ 514 (523)
+..++++.+.+
T Consensus 100 ~k~~~~~~~~~ 110 (195)
T 3n07_A 100 DKVQAYYDICQ 110 (195)
T ss_dssp SHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 56666665543
No 31
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=38.15 E-value=57 Score=29.21 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=49.5
Q ss_pred CceEEEEEecCCCccChH--------------HHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCccc
Q 009895 438 TIQAVIIDMSNSMNIDTS--------------GILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCV 501 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDss--------------gl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~i 501 (523)
..|.+++|+.++ -+|+. -.+.+ ..++++++|+++.++.- .+.+++.++..|+.+.+.. +
T Consensus 48 ~ik~viFDlDGT-L~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~--~ 122 (211)
T 3ij5_A 48 NIRLLICDVDGV-MSDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQG--Q 122 (211)
T ss_dssp TCSEEEECCTTT-TSSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECS--C
T ss_pred CCCEEEEeCCCC-EECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcc--c
Confidence 478999999886 22221 00111 67889999999999864 4578999999999877752 2
Q ss_pred ccCHHHHHHHHhhc
Q 009895 502 YLSVAEAMEACLTS 515 (523)
Q Consensus 502 f~s~~~Al~~~~~~ 515 (523)
.+..++++.+.++
T Consensus 123 -k~K~~~l~~~~~~ 135 (211)
T 3ij5_A 123 -SDKLVAYHELLAT 135 (211)
T ss_dssp -SSHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHH
Confidence 5666676665443
No 32
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=37.62 E-value=74 Score=25.52 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhccccccc
Q 009895 462 ELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFAALS 521 (523)
Q Consensus 462 ~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~~~~~ 521 (523)
++.+.++++|+++++|+- -+..++.|+..|+.-..+ .-.+.+||++...+.+-....
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~v~eal~~~~~g~L~~~~ 111 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVTG---VYGRISDVIKAFIGGKLKIDY 111 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHTTCEEECS---BCSBHHHHHHHHHTTCCCBCT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHcCCCCcCC
Confidence 455666778999999975 788999999999853332 346899999998876655443
No 33
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=36.63 E-value=28 Score=32.52 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=41.3
Q ss_pred CCceEEEEEecCCCccChHH---------------------------HHHHHHHHHHHHhCCCEEEEEcCCH-----HHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSG---------------------------ILVLEELHKKLASNGIELVMASPRW-----QVI 484 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssg---------------------------l~~L~~~~~~~~~~g~~l~l~~~~~-----~v~ 484 (523)
..++.+++|+.++- +|+.. ..-..++.++++++|+++.++.-++ .+.
T Consensus 57 ~~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~ 135 (258)
T 2i33_A 57 EKKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATI 135 (258)
T ss_dssp SSEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHH
T ss_pred CCCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHH
Confidence 56889999999865 45431 1123457788999999999987654 567
Q ss_pred HHHHHCCCc
Q 009895 485 HKLKSAKLL 493 (523)
Q Consensus 485 ~~l~~~gl~ 493 (523)
+.|+..|+.
T Consensus 136 ~~L~~~Gl~ 144 (258)
T 2i33_A 136 KNLERVGAP 144 (258)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHcCCC
Confidence 788888886
No 34
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=33.89 E-value=32 Score=32.04 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=47.4
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCc-cccCCcccccCHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLL-DRIGKGCVYLSVAEAMEA 511 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~-~~~~~~~if~s~~~Al~~ 511 (523)
.++.+++|+.++-+-+.....--.+..++++++|+++.++.- ...+.+.++..|+. ... +.++.+.+.+.++
T Consensus 13 ~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~~~~~--~~ii~~~~~~~~~ 90 (284)
T 2hx1_A 13 KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSITA--DKIISSGMITKEY 90 (284)
T ss_dssp GCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCTTCCG--GGEEEHHHHHHHH
T ss_pred cCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcCCCCH--hhEEcHHHHHHHH
Confidence 478999999987654332222233556778889999999873 35678888888885 322 3455555444444
Q ss_pred Hh
Q 009895 512 CL 513 (523)
Q Consensus 512 ~~ 513 (523)
++
T Consensus 91 l~ 92 (284)
T 2hx1_A 91 ID 92 (284)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 35
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=33.64 E-value=1.2e+02 Score=23.84 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=40.3
Q ss_pred CCceEEEEEecCCC--ccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSM--NIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~--~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
..+..+++|...-. .-|..|.+.+.++.+. ..+..+++.... .+........|..+.+.+..-...+.++++.+
T Consensus 46 ~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 46 ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ--YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNA 123 (140)
T ss_dssp SCEEEEEEETTTTC-----CCHHHHHHHHHHH--CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh--CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHH
Confidence 34789999986421 0144577777777654 234555555433 33444445567766654322233344555554
Q ss_pred hh
Q 009895 513 LT 514 (523)
Q Consensus 513 ~~ 514 (523)
.+
T Consensus 124 ~~ 125 (140)
T 2qr3_A 124 AS 125 (140)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 36
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=33.33 E-value=1.8e+02 Score=28.86 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=39.4
Q ss_pred CCceEEEEEecCCCccC------------------hHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNID------------------TSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKS 489 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iD------------------ssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~ 489 (523)
.++|.+|+|+.++-.=. ...-.-+.++.+.++++|+++.++.-+ +.+++.++.
T Consensus 220 ~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp CCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 67899999998864221 112345777889999999999998764 567888877
No 37
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=33.04 E-value=42 Score=29.13 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCcccc
Q 009895 459 VLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRI 496 (523)
Q Consensus 459 ~L~~~~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~ 496 (523)
-..++.++++++|.++.++.-+ ..+++.++..|+.+.+
T Consensus 38 g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 38 NAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp THHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred CHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 3456678888999999887643 5788999999987654
No 38
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.02 E-value=1e+02 Score=24.37 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=44.0
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH---HHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKL---KSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l---~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.++..+++|..- -|..|.+.+.++.+.-...+..+++.....+..... ...|..+.+.+..-...+.++++.+
T Consensus 49 ~~~dlvi~d~~l---~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 124 (140)
T 3grc_A 49 RPYAAMTVDLNL---PDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRA 124 (140)
T ss_dssp SCCSEEEECSCC---SSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC---CCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHH
Confidence 456899999853 245677777777664445678888888776554433 3456666554432233344444443
No 39
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=32.77 E-value=53 Score=26.81 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=44.5
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
.++..+++|... -|.+|.+.+.++.+. ..+..+++.... ++........|..+.+.+..-...+.++++.+.+
T Consensus 65 ~~~dlii~D~~l---~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 65 ESVDIAILDVEM---PVKTGLEVLEWIRSE--KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp SCCSEEEECSSC---SSSCHHHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCC---CCCcHHHHHHHHHHh--CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 457899999853 245677777776654 245666666554 3355555667877776543334445556655543
Q ss_pred c
Q 009895 515 S 515 (523)
Q Consensus 515 ~ 515 (523)
+
T Consensus 140 ~ 140 (150)
T 4e7p_A 140 G 140 (150)
T ss_dssp T
T ss_pred C
Confidence 3
No 40
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=32.55 E-value=1.1e+02 Score=24.83 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=42.1
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
..+..+++|+..- |..|.+.+.++.+.. .+..+++.... .+........|..+.+.+..-...+.++++.+.+
T Consensus 50 ~~~dlii~D~~l~---~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 50 TTPDIVVMDLTLP---GPGGIEATRHIRQWD--GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp TCCSEEEECSCCS---SSCHHHHHHHHHHHC--TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred CCCCEEEEecCCC---CCCHHHHHHHHHHhC--CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 3468999998542 455777777776652 34555555433 3444445567777766543333445566665543
No 41
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=31.87 E-value=1.1e+02 Score=24.23 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=42.1
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
.++..+++|...- |..|.+.+.++.+.-...+..+++.... .+........|..+.+.+..-...+.++++.+.+
T Consensus 53 ~~~dlii~d~~l~---~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 53 VKPDVVMLDLMMV---GMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp TCCSEEEEETTCT---TSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEecccC---CCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3468999998542 4457666666654323356677766543 3333445567777766443333344555555443
No 42
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.93 E-value=99 Score=24.60 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=41.0
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
..+..+++|+ .. |..|.+.+.++.+. ..+..+++.... .+........|..+.+.+..-...+.++++.+.
T Consensus 47 ~~~dlvi~d~--~~--~~~g~~~~~~l~~~--~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 47 EKIDLVFVDV--FE--GEESLNLIRRIREE--FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp SCCSEEEEEC--TT--THHHHHHHHHHHHH--CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeC--CC--CCcHHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 4578999998 43 56777777776653 235666666543 334444555677666543222334445555543
No 43
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=30.61 E-value=77 Score=25.77 Aligned_cols=72 Identities=10% Similarity=0.087 Sum_probs=42.4
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
++..+++|+.. -|..|.+.+.++.+. ..+..+++.... ++........|..+.+.+..-...+.++++.+.+
T Consensus 61 ~~dlii~d~~l---~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 61 LPDVALLDYRM---PGMDGAQVAAAVRSY--ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp CCSEEEEETTC---SSSCHHHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHHhc--CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHc
Confidence 46789999854 245677777766554 235666666553 3344445567777766543334445556655543
No 44
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=30.51 E-value=74 Score=29.91 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=46.8
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 439 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 439 ~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.|.+++|+.++-+-+..-..--.+..++++++|++++++.- ...+.+.++..|+.. ..++.++.+...+..++
T Consensus 21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~~-~~~~~i~~~~~~~~~~l 98 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFGG-LRAEQLFSSALCAARLL 98 (306)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCCS-CCGGGEEEHHHHHHHHH
T ss_pred CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCCc-CChhhEEcHHHHHHHHH
Confidence 68999999887654443333345567788899999998872 245678888888741 22234555444444444
No 45
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=29.61 E-value=27 Score=34.40 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=52.3
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHH-HCCCccccCCcccccCHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLK-SAKLLDRIGKGCVYLSVAEAMEA 511 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~-----~~v~~~l~-~~gl~~~~~~~~if~s~~~Al~~ 511 (523)
..+.+++|+.+|-+-+...+.--.+..+.++++|+++.++.-+ .+..+.|+ ..|+. +.+++++.|...+.++
T Consensus 12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~--~~~~~i~ts~~~~~~~ 89 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVD--VSPLQIIQSHTPYKSL 89 (352)
T ss_dssp CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSC--CCGGGEECTTGGGGGG
T ss_pred cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCC--CChhhEeehHHHHHHH
Confidence 4689999999988877666666666778888999999887643 45667776 57874 4556777776554443
Q ss_pred H
Q 009895 512 C 512 (523)
Q Consensus 512 ~ 512 (523)
.
T Consensus 90 ~ 90 (352)
T 3kc2_A 90 V 90 (352)
T ss_dssp T
T ss_pred H
Confidence 3
No 46
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=29.56 E-value=1.1e+02 Score=24.89 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=39.5
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHHCC-CccccCCcccccCHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW--QVIHKLKSAK-LLDRIGKGCVYLSVAEAMEA 511 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~g-l~~~~~~~~if~s~~~Al~~ 511 (523)
.++..+++|...- |..|.+.+.++.+ +..+..+++..... +........| ..+.+.+..-...+.++++.
T Consensus 57 ~~~dlvi~D~~l~---~~~g~~~~~~l~~--~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~ 129 (153)
T 3hv2_A 57 REVDLVISAAHLP---QMDGPTLLARIHQ--QYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQ 129 (153)
T ss_dssp SCCSEEEEESCCS---SSCHHHHHHHHHH--HCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCC---cCcHHHHHHHHHh--HCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHH
Confidence 4578999998642 5668888877765 33466777766543 3333333455 66665443222333344433
No 47
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=29.15 E-value=2.3e+02 Score=27.93 Aligned_cols=89 Identities=10% Similarity=0.151 Sum_probs=55.8
Q ss_pred EEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEe-cCCCccChHHHHHHHHHHHHHHhCCCEE--EEE
Q 009895 401 IRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDM-SNSMNIDTSGILVLEELHKKLASNGIEL--VMA 477 (523)
Q Consensus 401 i~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~-s~v~~iDssgl~~L~~~~~~~~~~g~~l--~l~ 477 (523)
+.+.|. ++.+++++.++..++ +++.+.++++. .++...|--+ +.+.+..+++ +.++.+ .+.
T Consensus 287 lD~gG~----a~~~~~~~~~~~il~----------d~~v~~ilvni~ggi~~~~~vA-~gii~a~~~~-~~~~pivvrl~ 350 (388)
T 2nu8_B 287 LDVGGG----ATKERVTEAFKIILS----------DDKVKAVLVNIFGGIVRCDLIA-DGIIGAVAEV-GVNVPVVVRLE 350 (388)
T ss_dssp EECCSC----CCHHHHHHHHHHHHT----------STTCCEEEEEEESCSSCHHHHH-HHHHHHHHHH-TCCSCEEEEEE
T ss_pred eEecCC----CCHHHHHHHHHHHhc----------CCCCCEEEEEecCCcCCchHHH-HHHHHHHHhc-CCCCeEEEEeC
Confidence 444555 566777777665554 35677777775 6777767665 4455555554 244444 455
Q ss_pred cCCH-HHHHHHHHCCCccccCCcccc--cCHHHHHHHH
Q 009895 478 SPRW-QVIHKLKSAKLLDRIGKGCVY--LSVAEAMEAC 512 (523)
Q Consensus 478 ~~~~-~v~~~l~~~gl~~~~~~~~if--~s~~~Al~~~ 512 (523)
+.+. +-+++|+.+|+ .++ +|.++|.+.+
T Consensus 351 G~n~~~g~~~l~~~g~-------~~~~~~~~~~aa~~~ 381 (388)
T 2nu8_B 351 GNNAELGAKKLADSGL-------NIIAAKGLTDAAQQV 381 (388)
T ss_dssp STTHHHHHHHHHTTCS-------SEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCC-------ceecCCCHHHHHHHH
Confidence 5554 45678877774 355 9999998764
No 48
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.47 E-value=51 Score=26.26 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=43.2
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
++..+++|... -|..|.+.+.++.+.. .+..+++.... ++........|..+.+.+..-...+.++++.+.+
T Consensus 51 ~~dlvi~d~~l---~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 51 APDVIITDIRM---PKLGGLEMLDRIKAGG--AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CCSEEEECSSC---SSSCHHHHHHHHHHTT--CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHHhcC--CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 46789999863 2556777777665432 45666666553 3344445567777777554444455556665543
No 49
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=28.38 E-value=84 Score=26.52 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=35.8
Q ss_pred eEEEEEecCCCccChH----------HHHHHHHHHHHHHhCCCEEEEEcCCH-----------------HHHHHHHHCC-
Q 009895 440 QAVIIDMSNSMNIDTS----------GILVLEELHKKLASNGIELVMASPRW-----------------QVIHKLKSAK- 491 (523)
Q Consensus 440 ~~vIlD~s~v~~iDss----------gl~~L~~~~~~~~~~g~~l~l~~~~~-----------------~v~~~l~~~g- 491 (523)
|.+++|+.++-.-+.. -..-..+..++++++|.++.++.-++ .+++.++..|
T Consensus 2 k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 81 (179)
T 3l8h_A 2 KLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGG 81 (179)
T ss_dssp CEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 4667777665332211 11123556677889999988887653 4678888888
Q ss_pred -Ccccc
Q 009895 492 -LLDRI 496 (523)
Q Consensus 492 -l~~~~ 496 (523)
+...+
T Consensus 82 ~~~~~~ 87 (179)
T 3l8h_A 82 VVDAIF 87 (179)
T ss_dssp CCCEEE
T ss_pred ceeEEE
Confidence 65544
No 50
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=27.22 E-value=98 Score=25.56 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhcccc
Q 009895 462 ELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFA 518 (523)
Q Consensus 462 ~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~~ 518 (523)
++.+.+.++|+++++|+- -+..++.|+..|+.-..+ .-.+++||++.+.+.+-.
T Consensus 67 ~~a~~L~~~gv~vVI~g~IG~~a~~~L~~~GI~v~~~---~~g~i~eal~~~~~G~L~ 121 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIKG---ASGTVEEVVNQYLSGQLK 121 (136)
T ss_dssp CHHHHHHHTTCSEEECSCCCHHHHHHHHHTTCEEECS---CCSBHHHHHHHHHTTC--
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEec---CCCCHHHHHHHHHhCCCC
Confidence 445667778999999975 788999999999953332 236899999988765543
No 51
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=26.84 E-value=1e+02 Score=25.31 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=35.1
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCC
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~ 498 (523)
++..+++|... -|..|.+.+.++.+.. .+..+++... +++........|..+.+.+
T Consensus 83 ~~dliilD~~l---~~~~g~~~~~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~K 140 (157)
T 3hzh_A 83 NIDIVTLXITM---PKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVK 140 (157)
T ss_dssp GCCEEEECSSC---SSSCHHHHHHHHHHHC--TTCCEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeccC---CCccHHHHHHHHHhhC--CCCcEEEEeccCcHHHHHHHHHcCCCEEEeC
Confidence 56789999853 2456788777776544 3455555544 3555555666777766643
No 52
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=26.74 E-value=49 Score=29.30 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=39.8
Q ss_pred CceEEEEEecCCCccCh---------HHHHHHHHHHHHHHhCCCEEEEEcCCH-----------------HHHHHHHHCC
Q 009895 438 TIQAVIIDMSNSMNIDT---------SGILVLEELHKKLASNGIELVMASPRW-----------------QVIHKLKSAK 491 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDs---------sgl~~L~~~~~~~~~~g~~l~l~~~~~-----------------~v~~~l~~~g 491 (523)
..+.+++|+.++-.-+. .-..-..++.++++++|+++.++.-++ .+++.++..|
T Consensus 24 ~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 103 (211)
T 2gmw_A 24 SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD 103 (211)
T ss_dssp CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcC
Confidence 46789999988765442 222335667788899999988776554 4677888888
Q ss_pred Cc
Q 009895 492 LL 493 (523)
Q Consensus 492 l~ 493 (523)
+.
T Consensus 104 l~ 105 (211)
T 2gmw_A 104 VD 105 (211)
T ss_dssp CC
T ss_pred Cc
Confidence 74
No 53
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=25.85 E-value=1.2e+02 Score=24.60 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=39.8
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.++..+++|...- |..|.+.+..+.+.-...+..+++... .++........|..+.+.+..-...+.++++.+
T Consensus 50 ~~~dlii~D~~l~---~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (154)
T 3gt7_A 50 TRPDLIISDVLMP---EMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRL 124 (154)
T ss_dssp CCCSEEEEESCCS---SSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCC---CCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 4578999998532 455777776665432224566666553 344444445567766664422223334444443
No 54
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=25.62 E-value=90 Score=24.37 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=38.2
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcc-cccCHHHHHHHHh
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGC-VYLSVAEAMEACL 513 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~-if~s~~~Al~~~~ 513 (523)
.++..+++|... -|.+|.+.+.++.+. ..+..+++.... +.........|..+.+.+.. -...+.++++.+.
T Consensus 50 ~~~dlvi~d~~l---~~~~g~~~~~~l~~~--~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 50 FTPDLMICDIAM---PRMNGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp CCCSEEEECCC--------CHHHHHHHHHT--TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred CCCCEEEEecCC---CCCCHHHHHHHHHhc--CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 457899999853 256677777766553 234555555443 33334444567776664422 2344566666554
Q ss_pred hc
Q 009895 514 TS 515 (523)
Q Consensus 514 ~~ 515 (523)
++
T Consensus 125 ~~ 126 (130)
T 3eod_A 125 YP 126 (130)
T ss_dssp C-
T ss_pred ch
Confidence 43
No 55
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=25.42 E-value=51 Score=26.06 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=42.7
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQ--VIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~--v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
++..+++|... -|..|.+.+.++.+. ..+..+++...+.+ ........|..+.+.+..-...+.++++.+.++
T Consensus 46 ~~dlii~d~~l---~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 46 KPDIVIIDVDI---PGVNGIQVLETLRKR--QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CCSEEEEETTC---SSSCHHHHHHHHHHT--TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCEEEEecCC---CCCChHHHHHHHHhc--CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 46789999854 345677777776553 23566666655443 344445677777665443344556666665443
No 56
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=25.24 E-value=1.5e+02 Score=23.58 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCccccc-CHHHHHHHHhhcccccc
Q 009895 462 ELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYL-SVAEAMEACLTSKFAAL 520 (523)
Q Consensus 462 ~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~-s~~~Al~~~~~~~~~~~ 520 (523)
+..+.+.++|+++++|+- -+...+.|+..|+.-..+ .-. +.+||++.+.+.+-+..
T Consensus 58 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~g~~i~eal~~~~~g~L~~~ 115 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTGYVGPKAFQALQAAGIKVGQD---LEGLTVRQAVQRFLDGQVPMA 115 (120)
T ss_dssp HHHHHHHHHTEEEEECSCCCHHHHHHHHHTTCEEECC---CTTSBHHHHHHHHHTTCSCBC
T ss_pred HHHHHHHHCCCCEEEECCCCHhHHHHHHHCCCEEEEc---CCCCcHHHHHHHHHcCCCCcC
Confidence 344556668999999985 688999999999853332 235 88999999887655443
No 57
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=24.99 E-value=67 Score=29.42 Aligned_cols=73 Identities=18% Similarity=0.093 Sum_probs=43.5
Q ss_pred eEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 440 QAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 440 ~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~-----~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
|.+++|+.++=+-+...+..-.+..++++++|+++.++.-+ .++.+.++..|+.. .++.++.+...+.+++++
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~--~~~~i~~~~~~~~~~l~~ 79 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV--SSSIIITSGLATRLYMSK 79 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCC--CGGGEEEHHHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhhEEecHHHHHHHHHH
Confidence 67889998865533211222345566778889999888754 34556666667742 223566555555555543
No 58
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=24.90 E-value=21 Score=31.40 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=46.7
Q ss_pred CCceEEEEEecCCCc-----cChHHHHHHHHH-------HHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccc
Q 009895 437 RTIQAVIIDMSNSMN-----IDTSGILVLEEL-------HKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVY 502 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~-----iDssgl~~L~~~-------~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if 502 (523)
.+.+.+++|+.++-. .|..+ ..+.++ .++++++|+++.++.- .+.+++.++..|+.+.+.. +
T Consensus 17 ~~ik~vifD~DGtL~~~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~--~- 92 (191)
T 3n1u_A 17 KKIKCLICDVDGVLSDGLLHIDNHG-NELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG--Q- 92 (191)
T ss_dssp HTCSEEEECSTTTTBCSCCEECTTC-CEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECS--C-
T ss_pred hcCCEEEEeCCCCCCCCceeecCCc-hhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeC--C-
Confidence 357899999988642 22211 112222 6888999999998875 4578889999999876642 2
Q ss_pred cCHHHHHHHH
Q 009895 503 LSVAEAMEAC 512 (523)
Q Consensus 503 ~s~~~Al~~~ 512 (523)
.+..++++.+
T Consensus 93 kpk~~~~~~~ 102 (191)
T 3n1u_A 93 VDKRSAYQHL 102 (191)
T ss_dssp SSCHHHHHHH
T ss_pred CChHHHHHHH
Confidence 3334555444
No 59
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.70 E-value=1.4e+02 Score=23.69 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=40.9
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW--QVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
..+..+++|... -|.+|.+.+.++.+. ..+..+++..... +........|..+.+.+..-...+.++++.+
T Consensus 48 ~~~dlvi~d~~l---~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 120 (143)
T 3jte_A 48 NSIDVVITDMKM---PKLSGMDILREIKKI--TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNA 120 (143)
T ss_dssp TTCCEEEEESCC---SSSCHHHHHHHHHHH--CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC---CCCcHHHHHHHHHHh--CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 457899999864 256688877777654 3456666665543 3344455667766654432233344444433
No 60
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=24.59 E-value=83 Score=32.52 Aligned_cols=42 Identities=7% Similarity=-0.039 Sum_probs=37.0
Q ss_pred CCceEEEEEecCCCccChH-----HHHHHHHHHHHHHhCCCEEEEEcCC
Q 009895 437 RTIQAVIIDMSNSMNIDTS-----GILVLEELHKKLASNGIELVMASPR 480 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDss-----gl~~L~~~~~~~~~~g~~l~l~~~~ 480 (523)
.+++.+|+| .++.+|.. ....+.++.+.++++|+.+++++-.
T Consensus 370 ~~p~llilD--p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~ 416 (525)
T 1tf7_A 370 FKPARIAID--SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS 416 (525)
T ss_dssp TCCSEEEEE--CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hCCCEEEEc--ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 457899999 88999998 8889999999999999999988754
No 61
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=24.13 E-value=1.9e+02 Score=22.33 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=40.7
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.++..+++|...- |..|.+.+.++.+........+++... .++........|..+.+.+..-...+.++++...
T Consensus 49 ~~~dlii~d~~l~---~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 49 FEPAIMTLDLSMP---KLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp TCCSEEEEESCBT---TBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCC---CCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 3467899998632 456777776665443224456666654 3333334445677776654333334444554443
No 62
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=23.71 E-value=2.5e+02 Score=21.59 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=44.2
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
++..+++|+.. . |.+|.+.+.++.+. ......+++... +++........|..+.+.+..-.....++++.+..+
T Consensus 48 ~~dlvllD~~l-~--~~~g~~~~~~l~~~-~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 48 RPDILLLDIIM-P--HLDGLAVLERIRAG-FEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHHH-CSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred CCCEEEEecCC-C--CCCHHHHHHHHHhc-CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 35789999863 3 34577777766552 123455554433 334444455567777665544556677788776554
Q ss_pred cc
Q 009895 516 KF 517 (523)
Q Consensus 516 ~~ 517 (523)
+.
T Consensus 124 ~~ 125 (130)
T 1dz3_A 124 TT 125 (130)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 63
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=23.68 E-value=49 Score=30.31 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc-----CCHHHHHHHHHCCCc
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS-----PRWQVIHKLKSAKLL 493 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~~gl~ 493 (523)
...+.+++|+.++=.=+..-..--.+..++++++|+++.++. .....++.++..|+.
T Consensus 15 ~~~~~v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~ 76 (271)
T 1vjr_A 15 DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVD 76 (271)
T ss_dssp GGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCC
T ss_pred cCCCEEEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 457899999988654332222223456678899999999888 235677888887763
No 64
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=23.29 E-value=2.5e+02 Score=21.96 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=40.4
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW--QVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
..+..+++|+.. . |..|.+.+.++.+.-...+..+++...+. .........|..+.+.+..-...+.++++.+
T Consensus 47 ~~~dlvl~D~~l-p--~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 121 (136)
T 3t6k_A 47 NLPDALICDVLL-P--GIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNI 121 (136)
T ss_dssp SCCSEEEEESCC-S--SSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-C--CCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 456799999863 3 45588877777554334456666665543 3333344566666554322223344444444
No 65
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.03 E-value=88 Score=25.03 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=35.9
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~ 498 (523)
.++..+++|... -|..|.+.+.++.+.-...+..+++... +++........|..+.+.+
T Consensus 50 ~~~dlii~D~~l---~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~K 110 (144)
T 3kht_A 50 AKYDLIILDIGL---PIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDK 110 (144)
T ss_dssp CCCSEEEECTTC---GGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEeCCC---CCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 456789999853 2556777776665532234566666554 3455555556787776643
No 66
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=22.78 E-value=70 Score=28.95 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccC
Q 009895 460 LEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIG 497 (523)
Q Consensus 460 L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~ 497 (523)
..++.+.++++|+++.+++.++...+.|+..|+.+.|.
T Consensus 121 ~~~ll~~Lk~~g~~i~i~~~~~~~~~~L~~~gl~~~Fd 158 (250)
T 4gib_A 121 IESLLIDVKSNNIKIGLSSASKNAINVLNHLGISDKFD 158 (250)
T ss_dssp HHHHHHHHHHTTCEEEECCSCTTHHHHHHHHTCGGGCS
T ss_pred HHHHHHHHHhcccccccccccchhhhHhhhcccccccc
Confidence 45667788999999999999888999999999987663
No 67
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=22.35 E-value=1.6e+02 Score=24.29 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhccc
Q 009895 462 ELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKF 517 (523)
Q Consensus 462 ~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~ 517 (523)
...+.+.++|+++++|+- -+..++.|+. |+.-..+ --.+++||++.+.+.+.
T Consensus 70 ~~~~~L~~~gv~~VI~g~iG~~a~~~L~~-GI~v~~~---~~~~veeal~~~~~G~L 122 (136)
T 2re2_A 70 FMLKSALDHGANALVLSEIGSPGFNFIKN-KMDVYIV---PEMPVADALKLILEGKV 122 (136)
T ss_dssp HHHHHHHHTTCSEEEESCCBHHHHHHHTT-TSEEEEC---CSCBHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHC-CCEEEEc---CCCCHHHHHHHHHhCCC
Confidence 445666678999999984 6778899999 9853333 22689999998876443
No 68
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=22.33 E-value=37 Score=27.15 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=14.5
Q ss_pred ccccCHHHHHHHHhhcc
Q 009895 500 CVYLSVAEAMEACLTSK 516 (523)
Q Consensus 500 ~if~s~~~Al~~~~~~~ 516 (523)
.-|+|.|||+++|+.+.
T Consensus 64 L~F~skE~AiayAek~G 80 (108)
T 2lju_A 64 LSFTTRELAIAYAVAHK 80 (108)
T ss_dssp EEESSHHHHHHHHHHTT
T ss_pred EecCCHHHHHHHHHHcC
Confidence 46999999999999754
No 69
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=21.63 E-value=35 Score=27.17 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.4
Q ss_pred ccccCHHHHHHHHhhcc
Q 009895 500 CVYLSVAEAMEACLTSK 516 (523)
Q Consensus 500 ~if~s~~~Al~~~~~~~ 516 (523)
.-|+|.|||+++|+.+.
T Consensus 56 L~F~skE~AiayAek~G 72 (106)
T 2jya_A 56 LTFETQEQAEAYAQRKG 72 (106)
T ss_dssp EEESSHHHHHHHHHHHT
T ss_pred EecCCHHHHHHHHHHcC
Confidence 46999999999998753
No 70
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.39 E-value=2.9e+02 Score=22.44 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=38.6
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~ 498 (523)
.++.-+++|.. ++.+| |.+.+.++.+.-+.++..+++.... ++........|..+.+.+
T Consensus 56 ~~~DlillD~~-MP~md--G~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~K 116 (134)
T 3to5_A 56 GDFDFVVTDWN-MPGMQ--GIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVK 116 (134)
T ss_dssp HCCSEEEEESC-CSSSC--HHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEES
T ss_pred CCCCEEEEcCC-CCCCC--HHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 35679999984 45554 8888888866545566777776654 333444456788777654
No 71
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=20.74 E-value=1.9e+02 Score=23.09 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhccccc
Q 009895 462 ELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFAA 519 (523)
Q Consensus 462 ~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~~~ 519 (523)
...+.+..+|+++++|+- -+...+.|+..|+.-..+ .-.+.+||++.+.+.+...
T Consensus 56 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~g~L~~ 111 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIASSPGPNAFEVLNELGIKIYRA---TGTSVEENLKLFTEGNLEE 111 (124)
T ss_dssp THHHHHHHTTCCEEEECCSSHHHHHHHHHHTCEEEEC---CSCCHHHHHHHHHTTCSCE
T ss_pred HHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHHhCCCCc
Confidence 345566788999999975 688899999999853332 3368999999987655443
No 72
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.68 E-value=2.8e+02 Score=21.02 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=33.0
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~ 498 (523)
.++..+++|+.. =|.+|.+.+.++.+. .+..+++... .+.........|..+.+.+
T Consensus 45 ~~~dlii~D~~~---p~~~g~~~~~~lr~~---~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~K 102 (120)
T 3f6p_A 45 LQPDLILLDIML---PNKDGVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTK 102 (120)
T ss_dssp TCCSEEEEETTS---TTTHHHHHHHHHHTT---CCSCEEEEEESSCHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEeCCC---CCCCHHHHHHHHHhc---CCCCEEEEECCCChHHHHHHHhCCcceeEcC
Confidence 356789999863 356788887777542 3455554443 3333334455677666543
No 73
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=20.62 E-value=1.3e+02 Score=23.77 Aligned_cols=56 Identities=14% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHCCCccccCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV-MASPRWQVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~-l~~~~~~v~~~l~~~gl~~~~~~ 498 (523)
..+..+++|... . |..|.+.+.++.+. .....++ +++......+.+ ..|..+.+.+
T Consensus 54 ~~~dlvi~d~~l-~--~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~-~~g~~~~l~K 110 (143)
T 2qv0_A 54 NKVDAIFLDINI-P--SLDGVLLAQNISQF--AHKPFIVFITAWKEHAVEAF-ELEAFDYILK 110 (143)
T ss_dssp CCCSEEEECSSC-S--SSCHHHHHHHHTTS--TTCCEEEEEESCCTTHHHHH-HTTCSEEEES
T ss_pred CCCCEEEEecCC-C--CCCHHHHHHHHHcc--CCCceEEEEeCCHHHHHHHH-hCCcceEEeC
Confidence 346789999854 2 34577666665442 2344444 444444445444 5666665543
No 74
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=20.56 E-value=1.9e+02 Score=21.92 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIG 497 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~ 497 (523)
..+..+++|+.. + |.+|.+.+.++.+. ..+..+++...+ ++........|..+.+.
T Consensus 43 ~~~dlil~D~~l-~--~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 100 (121)
T 2pl1_A 43 HIPDIAIVDLGL-P--DEDGLSLIRRWRSN--DVSLPILVLTARESWQDKVEVLSAGADDYVT 100 (121)
T ss_dssp SCCSEEEECSCC-S--SSCHHHHHHHHHHT--TCCSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEecCC-C--CCCHHHHHHHHHhc--CCCCCEEEEecCCCHHHHHHHHHcCccceEE
Confidence 346789999864 2 34566666655432 234555555443 33334444567766654
No 75
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=20.52 E-value=2.4e+02 Score=21.93 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=39.5
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW--QVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
++..+++|+.. + |..|.+.+.++.+. ..+..+++..... +......+.|..+.+.+..-...+.++++.+.
T Consensus 49 ~~dlvilD~~l-p--~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 121 (133)
T 3b2n_A 49 NPNVVILDIEM-P--GMTGLEVLAEIRKK--HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVN 121 (133)
T ss_dssp CCSEEEECSSC-S--SSCHHHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHH
T ss_pred CCCEEEEecCC-C--CCCHHHHHHHHHHH--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 35789999853 3 34577776666542 3456777665433 33333445677766644333344455555443
No 76
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=20.39 E-value=4.3e+02 Score=24.24 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=39.7
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQV 483 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 483 (523)
.+++.+++| +..+.+|......+.++.++++++|..++++.-..+.
T Consensus 176 ~~p~lllLD-EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 176 MEPKIMLFD-EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp TCCSEEEEE-STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCCCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 457899999 8899999999999999999998888899888876544
No 77
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=20.37 E-value=4e+02 Score=24.36 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=39.4
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQV 483 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 483 (523)
.+++.+++| +..+.+|......+.++.++++++|..++++.-..+.
T Consensus 170 ~~p~lllLD-EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 170 MEPDVLLFD-EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 215 (262)
T ss_dssp TCCSEEEEE-STTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred cCCCEEEEe-CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 457899999 8899999999999999999998888888888876544
No 78
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=20.20 E-value=2.4e+02 Score=25.14 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=38.9
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQ 482 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 482 (523)
.+++.+++| +..+.+|......+.++.++++++|..++++.-+.+
T Consensus 157 ~~p~lllLD-EPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 201 (224)
T 2pcj_A 157 NEPILLFAD-EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201 (224)
T ss_dssp TCCSEEEEE-STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 457899999 889999999999999999999888889988876644
No 79
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.15 E-value=3.3e+02 Score=21.55 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=44.3
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHh--CCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLAS--NGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~--~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.++..+++|... . |..|.+.+.++.+.-.. +...+++... .++..+.....|..+.+.+..-...+.++++.+
T Consensus 57 ~~~dlvl~D~~m-p--~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~ 133 (143)
T 3m6m_D 57 EDYDAVIVDLHM-P--GMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADL 133 (143)
T ss_dssp SCCSEEEEESCC-S--SSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-C--CCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHH
Confidence 457899999863 3 44588887777654333 2345555544 355556666778877665444444555566555
Q ss_pred hh
Q 009895 513 LT 514 (523)
Q Consensus 513 ~~ 514 (523)
..
T Consensus 134 ~~ 135 (143)
T 3m6m_D 134 AV 135 (143)
T ss_dssp C-
T ss_pred HH
Confidence 43
Done!