Query 009895
Match_columns 523
No_of_seqs 259 out of 1787
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 15:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009895.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009895hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h4xa_ c.13.2.1 (A:) Anti-sig 99.7 4.2E-18 3E-22 141.7 10.0 102 396-512 9-110 (111)
2 d1th8b_ c.13.2.1 (B:) Anti-sig 99.7 4.2E-18 3.1E-22 142.6 8.5 106 394-513 8-113 (115)
3 d1vc1a_ c.13.2.1 (A:) Anti-sig 99.7 1.1E-17 8.1E-22 138.8 9.5 101 394-508 10-110 (110)
4 d2q3la1 c.13.2.2 (A:1-125) Unc 83.6 1 7.4E-05 35.5 6.2 103 397-512 19-124 (125)
5 d2nu7b1 c.23.4.1 (B:239-388) S 78.1 6.3 0.00046 31.7 9.3 94 400-512 48-143 (150)
6 d2csua3 c.23.4.1 (A:291-453) A 77.0 6.7 0.00049 31.7 9.6 84 411-513 61-152 (163)
7 d2c4na1 c.108.1.14 (A:1-250) N 74.2 1.5 0.00011 38.6 4.9 76 439-516 3-83 (250)
8 d1eucb1 c.23.4.1 (B:246-393) S 74.2 7.6 0.00055 31.1 8.7 94 400-512 48-143 (148)
9 d1ccwa_ c.23.6.1 (A:) Glutamat 61.6 16 0.0012 28.5 8.3 93 397-515 31-133 (137)
10 d1a04a2 c.23.1.1 (A:5-142) Nit 49.6 16 0.0011 28.4 6.3 71 438-513 48-120 (138)
11 d1vjra_ c.108.1.14 (A:) Hypoth 48.9 6.4 0.00046 34.3 4.1 76 437-514 5-85 (261)
12 d7reqa2 c.23.6.1 (A:561-728) M 43.0 28 0.002 28.2 6.9 94 397-513 65-163 (168)
13 d1yv9a1 c.108.1.14 (A:4-256) P 41.4 13 0.00091 32.1 4.8 74 439-514 2-81 (253)
14 d1jbea_ c.23.1.1 (A:) CheY pro 40.4 34 0.0024 25.8 6.9 73 437-512 48-122 (128)
15 d1wvia_ c.108.1.14 (A:) Putati 34.8 13 0.00096 32.0 3.8 76 439-515 2-82 (253)
16 d1mb3a_ c.23.1.1 (A:) Cell div 32.9 42 0.003 25.0 6.2 72 438-512 45-118 (123)
17 d1u0sy_ c.23.1.1 (Y:) CheY pro 31.9 57 0.0041 24.1 6.8 56 438-498 46-103 (118)
18 d1dz3a_ c.23.1.1 (A:) Sporulat 28.1 1.1E+02 0.0077 22.5 8.5 73 438-514 47-121 (123)
19 d1p6qa_ c.23.1.1 (A:) CheY pro 27.4 48 0.0035 25.0 5.7 73 437-512 50-124 (129)
20 d1dbwa_ c.23.1.1 (A:) Transcri 27.2 51 0.0037 24.6 5.7 57 437-498 46-104 (123)
21 d1i3ca_ c.23.1.1 (A:) Response 25.3 58 0.0042 25.0 5.9 73 437-512 55-129 (144)
22 d1zesa1 c.23.1.1 (A:3-123) Pho 23.6 40 0.0029 25.1 4.4 59 437-498 43-103 (121)
23 d1g6ha_ c.37.1.12 (A:) MJ1267 23.1 1.1E+02 0.0082 25.9 8.0 43 437-480 167-209 (254)
24 d1izca_ c.1.12.5 (A:) Macropho 23.1 2.3E+02 0.016 24.6 10.4 72 437-514 61-137 (299)
25 d1eo1a_ c.55.5.1 (A:) Hypothet 23.1 70 0.0051 23.7 5.8 54 464-520 58-112 (124)
26 g1f2t.1 c.37.1.12 (A:,B:) Rad5 22.2 43 0.0031 28.5 5.0 48 437-485 224-271 (292)
27 d2e74e1 f.23.24.1 (E:1-32) Pet 21.4 61 0.0044 17.4 4.0 14 345-358 12-25 (32)
28 d1b0ua_ c.37.1.12 (A:) ATP-bin 21.0 1.9E+02 0.014 24.5 9.0 46 437-483 166-211 (258)
29 d2ayxa1 c.23.1.1 (A:817-949) S 20.0 81 0.0059 23.7 5.7 57 437-498 51-109 (133)
No 1
>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}
Probab=99.73 E-value=4.2e-18 Score=141.65 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=95.0
Q ss_pred CcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEE
Q 009895 396 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV 475 (523)
Q Consensus 396 ~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~ 475 (523)
+++.+++++|+ |+|+|+++|++++.+.+++ ++++.+|+||++|+++|+||+++|.++.++++++|+++.
T Consensus 9 ~~~~vv~~~G~-L~~~~a~~~~~~~~~~i~~----------~~~~~vvlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~ 77 (111)
T d1h4xa_ 9 RETVVIRLFGE-LDHHAVEQIRAKISTAIFQ----------GAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTI 77 (111)
T ss_dssp TTEEEEEEEEE-ECHHHHHHHHHHHHHHHHH----------TSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCEEEEEEEEE-EEHHHHHHHHHHHHHHHhc----------CCCcEEEEEEECCcccCchHHHHHHHHHHHHHHCCCEEE
Confidence 46899999999 9999999999999887653 457899999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 476 MASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 476 l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
++|+++++++.|+.+|+.+.+ .|+|.+||++.+
T Consensus 78 l~~~~~~v~~~l~~~gl~~~~----~~~t~~eAl~~i 110 (111)
T d1h4xa_ 78 LLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRV 110 (111)
T ss_dssp EESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHT
T ss_pred EecCCHHHHHHHHHcCCCeEE----eeCCHHHHHHhc
Confidence 999999999999999998776 799999999875
No 2
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.72 E-value=4.2e-18 Score=142.57 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=98.5
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
..+++.+++++|+ |+|.|+++|++.+.+.+++ ++.+++|+||++|++||++|++.|.+++++++++|++
T Consensus 8 ~~~~v~vv~l~G~-L~~~~~~~~~~~l~~~~~~----------~~~~~iilDls~v~~iDssg~~~L~~~~~~~~~~g~~ 76 (115)
T d1th8b_ 8 VKQDVLIVRLSGE-LDHHTAEELREQVTDVLEN----------RAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQ 76 (115)
T ss_dssp EETTEEEEEEEEE-ESHHHHHHHHHHHHHHHHS----------SCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCC
T ss_pred EECCEEEEEEEEE-EEHHHHHHHHHHHHHHHhc----------CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 3468999999999 9999999999999987753 4578999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
++++|+++++++.|+++|+.+.+ .+|+|.++|++++.
T Consensus 77 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~l~ 113 (115)
T d1th8b_ 77 MVVCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALG 113 (115)
T ss_dssp EEEESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTT
T ss_pred EEEEECCHHHHHHHHHcCCCcee---EEeCCHHHHHHHhc
Confidence 99999999999999999999988 59999999998764
No 3
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=99.71 E-value=1.1e-17 Score=138.79 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=94.2
Q ss_pred CCCcEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCE
Q 009895 394 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 473 (523)
Q Consensus 394 ~~~~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~ 473 (523)
+.+++.+++++|+ ++|.|++.|++.+.+.+++ ++.+.+|+|+++++++||+|+++|.++.++++++|++
T Consensus 10 ~~~~~~vv~l~G~-l~~~~~~~~~~~l~~~~~~----------~~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~ 78 (110)
T d1vc1a_ 10 EQDDKAIVRVQGD-IDAYNSSELKEQLRNFIST----------TSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKE 78 (110)
T ss_dssp EETTEEEEEEESC-BSTTTHHHHHHHHHHHHHH----------CCCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCE
T ss_pred EECCEEEEEEEEE-EEhHHHHHHHHHHHHHHhc----------CCCCEEEEEEECCCccCHHHHHHHHHHHHHHHhCCCE
Confidence 3468999999999 9999999999999987763 4578999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHH
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEA 508 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~A 508 (523)
++++++++++++.|+.+|+.+.+ ++|+|++||
T Consensus 79 l~l~~~~~~v~~~l~~~gl~~~~---~i~~t~~~A 110 (110)
T d1vc1a_ 79 FILSSLKESISRILKLTHLDKIF---KITDTVEEA 110 (110)
T ss_dssp EEEESCCHHHHHHHHHHTGGGTS---EEESSTTTC
T ss_pred EEEEeCCHHHHHHHHHcCCCcee---eccCChHhC
Confidence 99999999999999999999888 699999986
No 4
>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102 {Shewanella loihica [TaxId: 359303]}
Probab=83.63 E-value=1 Score=35.54 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=65.0
Q ss_pred cEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCce-EEEEEecCCCccChHHHHHHHHHHHHHH--hCCCE
Q 009895 397 GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQ-AVIIDMSNSMNIDTSGILVLEELHKKLA--SNGIE 473 (523)
Q Consensus 397 ~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~vIlD~s~v~~iDssgl~~L~~~~~~~~--~~g~~ 473 (523)
.+.-++++|. |+=..-+++...++..++++ +..+ .+++|+++...+|..++ +.++.-.++ ++=-+
T Consensus 19 ~ii~~~~~G~-lt~~D~~~~~~~l~~~l~~~---------~~~~v~~li~~~~F~G~~~~A~--~ed~k~~~~h~~~f~R 86 (125)
T d2q3la1 19 FYLAFKAVGK-LTHEDYEQMTPLLESALAGI---------KTPEIVALIDITELDGLSLHAA--WDDLKLGLKHGKEFKR 86 (125)
T ss_dssp EEEEEEEEEE-ECHHHHHHHHHHHHHHTTTC---------CSSCEEEEEEEEEEEEECHHHH--HHHHHHHHHHGGGEEE
T ss_pred cEEEEEEEee-ECHHHHHHHHHHHHHHHHhc---------CCceEEEEEEcCCCCCCCHHHH--HHHHHhHHhhhccccE
Confidence 4678999999 65555455555555544432 2234 67888888888886664 333332332 22257
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 474 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 474 l~l~~~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
+.+++-++=++..-+..+..-. .+-+.|++.++|.+|+
T Consensus 87 iAiV~d~~W~~~~~~~~~~f~~-~evk~F~e~~~A~~Wl 124 (125)
T d2q3la1 87 VAIIGQGELQEWATRVANWFTP-GEFKFFEDKRDALDWL 124 (125)
T ss_dssp EEEECCSHHHHHHHHHHHHHCS-SEEEEESCHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhhccC-CceEccCCHHHHHHhh
Confidence 8888877766666665554322 2458899999999985
No 5
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=78.12 E-value=6.3 Score=31.69 Aligned_cols=94 Identities=10% Similarity=0.098 Sum_probs=67.3
Q ss_pred EEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEe-cCCCccChHHHHHHHHHHHHHHhCCCEEEEEc
Q 009895 400 TIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDM-SNSMNIDTSGILVLEELHKKLASNGIELVMAS 478 (523)
Q Consensus 400 ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~-s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 478 (523)
.+.+.|. ++.+++++.++-.++ +++.|.+.++. .+++..|-.+-+....+.+.-.+.-+-+.+.+
T Consensus 48 FlDiGG~----a~~e~v~~al~lil~----------d~~vk~IlINifGGI~rcd~vA~GIv~A~k~~~~~iPiVVRl~G 113 (150)
T d2nu7b1 48 FLDVGGG----ATKERVTEAFKIILS----------DDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEG 113 (150)
T ss_dssp EEECCSC----CCHHHHHHHHHHHHT----------STTCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEES
T ss_pred EEecCCC----ccHHHHHHHHHHHHc----------CCCCCEEEEEEeeeeehhHHHHHHHHHHHHhcCCCCcEEEEecC
Confidence 6677787 788888888876554 36788999987 88899999987665554432223345566777
Q ss_pred CCH-HHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 479 PRW-QVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 479 ~~~-~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.+. +-+++|+.+|+. . +.++|.+||.+.+
T Consensus 114 tn~eeg~~iL~~~gl~-i----~~~~~l~eAa~~a 143 (150)
T d2nu7b1 114 NNAELGAKKLADSGLN-I----IAAKGLTDAAQQV 143 (150)
T ss_dssp TTHHHHHHHHHHHCSS-E----EECSSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCC-e----EEeCCHHHHHHHH
Confidence 765 468889888873 2 3689999997764
No 6
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=76.97 E-value=6.7 Score=31.71 Aligned_cols=84 Identities=7% Similarity=-0.002 Sum_probs=46.1
Q ss_pred echHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEe--cCCCccChHHHHHHHHHHHHHHhC--CCEEEEEc----CCHH
Q 009895 411 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDM--SNSMNIDTSGILVLEELHKKLASN--GIELVMAS----PRWQ 482 (523)
Q Consensus 411 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~--s~v~~iDssgl~~L~~~~~~~~~~--g~~l~l~~----~~~~ 482 (523)
.+.+.+++.++..+++ ++...+++-+ ......+.. +....+.+..++. ...++.+. ..++
T Consensus 61 ~~~~~~~~~l~~~~~d----------~~vd~v~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~kpv~~~~~~~~~~~~ 128 (163)
T d2csua3 61 ARGEDYYRTAKLLLQD----------PNVDMLIAICVVPTFAGMTLT--EHAEGIIRAVKEVNNEKPVLAMFMAGYVSEK 128 (163)
T ss_dssp CCHHHHHHHHHHHHHS----------TTCSEEEEEEECCCSTTCCSS--HHHHHHHHHHHHHCCCCCEEEEEECTTTTHH
T ss_pred CCHHHHHHHHHHHHcC----------CCcCEEEEeeccCCcccccHH--HHHHHHHHHHHHhcCCCcEEEEECCCCChHH
Confidence 3456677777665553 4455554433 333322221 2223333333332 23344442 3467
Q ss_pred HHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 483 VIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 483 v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.++.|+..|+ .+|++.|+|++++.
T Consensus 129 ~~~~l~~~Gi-------p~f~~pe~a~~Al~ 152 (163)
T d2csua3 129 AKELLEKNGI-------PTYERPEDVASAAY 152 (163)
T ss_dssp HHHHHHTTTC-------CEESSHHHHHHHHH
T ss_pred HHHHHHHCCC-------CcCCCHHHHHHHHH
Confidence 8899998876 38999999988764
No 7
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Probab=74.22 E-value=1.5 Score=38.62 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=51.2
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc-----CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 439 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS-----PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 439 ~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
+|.|++|+.++=+-+...+..-.+..++++++|++++++. .++++++.|+..|+. +++++++.+...+.+.++
T Consensus 3 ik~VifDlDGTL~~~~~~i~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~~~~~l~~~G~~--~~~~~i~~~~~~~~~~l~ 80 (250)
T d2c4na1 3 IKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLR 80 (250)
T ss_dssp CCEEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCC--CCGGGEEEHHHHHHHHHH
T ss_pred CCEEEEECCCeeEECCCcCccHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHhhcccc--ccceeEechHHHHHHHHH
Confidence 6899999999876433222222345677899999998864 346788888888874 445567776666656655
Q ss_pred hcc
Q 009895 514 TSK 516 (523)
Q Consensus 514 ~~~ 516 (523)
.++
T Consensus 81 ~~~ 83 (250)
T d2c4na1 81 RQE 83 (250)
T ss_dssp TSS
T ss_pred hhh
Confidence 444
No 8
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=74.18 E-value=7.6 Score=31.10 Aligned_cols=94 Identities=6% Similarity=0.111 Sum_probs=67.7
Q ss_pred EEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEe-cCCCccChHHHHHHHHHHHHHHhCCCEEEEEc
Q 009895 400 TIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDM-SNSMNIDTSGILVLEELHKKLASNGIELVMAS 478 (523)
Q Consensus 400 ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~-s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 478 (523)
.+.+-|. ++.+++++.++-.++ +++.|.+.++. .+++..|-.+.+....+.+.-.+.-+-+.+.+
T Consensus 48 FlDiGGg----a~~e~v~~al~iil~----------d~~Vk~IlINIfGGI~rcD~vA~GIv~A~~e~~~~iPiVVRL~G 113 (148)
T d1eucb1 48 FLDLGGG----VKESQVYQAFKLLTA----------DPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEG 113 (148)
T ss_dssp EEECCSS----CCHHHHHHHHHHTTS----------CTTCCEEEEEEECSSSCHHHHHHHHHHHHHHHTCCSCEEEEEES
T ss_pred EEecCCC----CCHHHHHHHHHHHHC----------CCCccEEEEEeeEeehhHHHHHHHHHHHHHhcCCCccEEEEecc
Confidence 5667788 788888888875444 36788999985 88999999996665555443334456667777
Q ss_pred CC-HHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 479 PR-WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 479 ~~-~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.+ ++-+++|+.+|+. + ..++|.+||.+.+
T Consensus 114 tn~eeg~~iL~~sgl~--i---~~~~~l~eAa~~a 143 (148)
T d1eucb1 114 TNVHEAQNILTNSGLP--I---TSAVDLEDAAKKA 143 (148)
T ss_dssp TTHHHHHHHHHTTCSS--E---EECSSHHHHHHHH
T ss_pred CChHHHHHHHHHCCCC--e---EEeCCHHHHHHHH
Confidence 75 5678889988883 2 4688999997654
No 9
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=61.64 E-value=16 Score=28.54 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=61.5
Q ss_pred cEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhC---CCE
Q 009895 397 GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASN---GIE 473 (523)
Q Consensus 397 ~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~---g~~ 473 (523)
++.++.+-.. ...++|.+...+ .+++.|.+..+..+. ...+.++.++++++ ++.
T Consensus 31 G~~V~~LG~~----~p~e~iv~a~~~--------------~~~d~v~lS~~~~~~-----~~~~~~~~~~l~~~~~~~i~ 87 (137)
T d1ccwa_ 31 GFNVVNIGVL----SPQELFIKAAIE--------------TKADAILVSSLYGQG-----EIDCKGLRQKCDEAGLEGIL 87 (137)
T ss_dssp TCEEEEEEEE----ECHHHHHHHHHH--------------HTCSEEEEEECSSTH-----HHHHTTHHHHHHHTTCTTCE
T ss_pred CCeEEecccc----cCHHHHHHHHHh--------------cCCCEEEEeeccccc-----hHHHHHHHHHHHHhccCCCE
Confidence 5566655433 345666666554 346788887766654 35566666666665 467
Q ss_pred EEEEcC-------CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhc
Q 009895 474 LVMASP-------RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 515 (523)
Q Consensus 474 l~l~~~-------~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~ 515 (523)
+++-+. .++..+.|+..|+...+++. .+.++++++++++
T Consensus 88 iivGG~~~~~~~~~~~~~~~l~~~Gv~~if~~~---t~~~~~~~~l~~~ 133 (137)
T d1ccwa_ 88 LYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPG---TPPEVGIADLKKD 133 (137)
T ss_dssp EEEEESCSSSSCCHHHHHHHHHHTTCSEECCTT---CCHHHHHHHHHHH
T ss_pred EEEeCCcCCCccccHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHHH
Confidence 777775 36789999999998776543 6788999988753
No 10
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=49.62 E-value=16 Score=28.36 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=43.1
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
++..+++|+. ++. ..|++.+.++.+.. ...++.+... .++....-.+.|..+.+.+..-...+.++++.+.
T Consensus 48 ~~DlvllD~~-mP~--~~G~el~~~ir~~~--~~~~vivlt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~v~ 120 (138)
T d1a04a2 48 DPDLILLDLN-MPG--MNGLETLDKLREKS--LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAA 120 (138)
T ss_dssp CCSEEEEETT-STT--SCHHHHHHHHHHSC--CCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHH
T ss_pred CCCEEEEecC-CCC--CCHHHHHHHHHhhC--CCCCEEEEEEECCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 4689999996 344 45888888886532 3455555443 3444444445788777765444445666666544
No 11
>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}
Probab=48.91 E-value=6.4 Score=34.27 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCccccCCcccccCHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEA 511 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~ 511 (523)
.+++.+++|+.++=+=+...+.--.+..++++++|.+++++.- ..+..+.++..|+. +.+++++.+.+.+.+.
T Consensus 5 ~~ik~vlFDlDGTL~~~~~~i~~a~e~l~~l~~~g~~~~~~TN~~~~~~~~~~~~~~~~g~~--~~~~~v~ts~~~~~~~ 82 (261)
T d1vjra_ 5 DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVD--VPDDAVVTSGEITAEH 82 (261)
T ss_dssp GGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCC--CCGGGEEEHHHHHHHH
T ss_pred HhCCEEEEeCCCeeEECCccCchHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhhccc--cccceeccHHHHHHHH
Confidence 4579999999998653322221113445678899999998742 34677778888873 3445677776666666
Q ss_pred Hhh
Q 009895 512 CLT 514 (523)
Q Consensus 512 ~~~ 514 (523)
...
T Consensus 83 ~~~ 85 (261)
T d1vjra_ 83 MLK 85 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 12
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=43.03 E-value=28 Score=28.18 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=56.3
Q ss_pred cEEEEEECCCceeEechHHHHHHHHHHHHhhhhhhhhhccCCceEEEEEecCCCccChHHHHHHHHHHHHHHhCC---CE
Q 009895 397 GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNG---IE 473 (523)
Q Consensus 397 ~i~ii~l~G~~L~f~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g---~~ 473 (523)
+.-++.+... .+.+++-+...+ .+.+.+.+. ..+.+......++.++++++| +.
T Consensus 65 G~eVi~lg~~----~~~e~iv~aa~~--------------~~advI~iS-----s~~~~~~~~~~~l~~~L~~~g~~~v~ 121 (168)
T d7reqa2 65 GFDVDVGPLF----QTPEETARQAVE--------------ADVHVVGVS-----SLAGGHLTLVPALRKELDKLGRPDIL 121 (168)
T ss_dssp TCEEEECCTT----BCHHHHHHHHHH--------------HTCSEEEEE-----ECSSCHHHHHHHHHHHHHHTTCTTSE
T ss_pred CcceecCCCc----CcHHHHHHHHHc--------------cCCCEEEEe-----cCcccchHHHHHHHHHHHhcCCCCeE
Confidence 4555555444 445555555443 335566655 455666788888888888876 55
Q ss_pred EEEEcC-CHHHHHHHHHCCCccccCCc-ccccCHHHHHHHHh
Q 009895 474 LVMASP-RWQVIHKLKSAKLLDRIGKG-CVYLSVAEAMEACL 513 (523)
Q Consensus 474 l~l~~~-~~~v~~~l~~~gl~~~~~~~-~if~s~~~Al~~~~ 513 (523)
++.-+. +++-.+.|+..|..+.|++. .+-+...+.+++++
T Consensus 122 VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~~~~~~~ 163 (168)
T d7reqa2 122 ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 163 (168)
T ss_dssp EEEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHHHHHHHHH
Confidence 555553 56666789999998887653 33233333444443
No 13
>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}
Probab=41.44 E-value=13 Score=32.07 Aligned_cols=74 Identities=12% Similarity=0.243 Sum_probs=44.9
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc-----CCHHHHHHHHH-CCCccccCCcccccCHHHHHHHH
Q 009895 439 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS-----PRWQVIHKLKS-AKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 439 ~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~-~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.+.+++|+.++=+-+.-.+.--.+..+++++.|++++++. ...++.+.|.. .++. .+++.++.+...+.+++
T Consensus 2 yk~v~fDlDGTL~~~~~~i~~a~~~i~~l~~~g~~~~~~Tn~s~~~~~~~~~~L~~~~~~~--~~~~~i~~~~~~~~~~l 79 (253)
T d1yv9a1 2 YQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIH--VPASLVYTATLATIDYM 79 (253)
T ss_dssp CCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCC--CCGGGEEEHHHHHHHHH
T ss_pred CCEEEEcCCCccEeCCCcCccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHHhcCCc--cccccccCHHHHHHHHH
Confidence 5799999999765332212212355688999999999873 23445554543 3332 34456777766666666
Q ss_pred hh
Q 009895 513 LT 514 (523)
Q Consensus 513 ~~ 514 (523)
+.
T Consensus 80 ~~ 81 (253)
T d1yv9a1 80 KE 81 (253)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 14
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=40.44 E-value=34 Score=25.84 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=45.5
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.++..+++|+.- +.+ .|.+.+.++.+.-..++..+.+... +++........|..+.+.+..-...+.+++..+
T Consensus 48 ~~~dlii~D~~m-P~~--dG~el~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~ 122 (128)
T d1jbea_ 48 GGYGFVISDWNM-PNM--DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122 (128)
T ss_dssp CCCCEEEEESCC-SSS--CHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeccc-ccC--CHHHHHHHHHhCccCCCCcEEEEECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 457899999974 555 4888888887766566777666544 344444445678888775533344455555443
No 15
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=34.82 E-value=13 Score=31.97 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=47.9
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEc-----CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 009895 439 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS-----PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 513 (523)
Q Consensus 439 ~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~ 513 (523)
.|.+++|+.++=+-+...+..=.+..+.++++|++++++. ...++.+.++.....+ .+.++++.+...+.++++
T Consensus 2 yk~vlFDlDGTL~~~~~~i~~a~e~l~~l~~~g~~~~~~TN~s~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~~~~~~l~ 80 (253)
T d1wvia_ 2 YKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIK-TPLETIYTATLATIDYMN 80 (253)
T ss_dssp CCEEEEECBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHHHHSCC-CCGGGEEEHHHHHHHHHH
T ss_pred cCEEEEcCcCceEECCCcCccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHhhcCcc-ccccccccHHHHHHHHHH
Confidence 5799999999876433322222344567888899998864 2355677776543222 244567777777777665
Q ss_pred hc
Q 009895 514 TS 515 (523)
Q Consensus 514 ~~ 515 (523)
.+
T Consensus 81 ~~ 82 (253)
T d1wvia_ 81 DM 82 (253)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 16
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=32.85 E-value=42 Score=24.97 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=42.1
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
++..+++|+.- + |.+|.+.+.++.+.-..+++.+++.... +.-+......|..+.+.+..-...+.++++.+
T Consensus 45 ~~dlil~D~~m-p--~~dG~el~~~ir~~~~~~~iPii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~ 118 (123)
T d1mb3a_ 45 KPDLILMDIQL-P--EISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRL 118 (123)
T ss_dssp CCSEEEEESBC-S--SSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEEecc-C--CCcHHHHHHHHHhCCCcCCCCeEEEEEecCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 46789999863 4 4459998888876665567776666543 33344455678877775532222334444433
No 17
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=31.90 E-value=57 Score=24.05 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCC
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~ 498 (523)
++..+++|+ +.=|.+|++.+.++.+. ..+..+++.... ++......+.|..+.+.+
T Consensus 46 ~~dliilD~---~mp~~~G~e~~~~ir~~--~~~~pvi~ls~~~~~~~~~~a~~~Ga~~yl~K 103 (118)
T d1u0sy_ 46 KPDIVTMDI---TMPEMNGIDAIKEIMKI--DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVK 103 (118)
T ss_dssp CCSEEEEEC---SCGGGCHHHHHHHHHHH--CTTCCEEEEECTTCHHHHHHHHHTTCCEEEES
T ss_pred cCCEEEEec---CCCCCCHHHHHHHHHHh--CCCCcEEEEEccCCHHHHHHHHHcCCCEEEEC
Confidence 468999997 44456899999998654 345666666543 344444556777777654
No 18
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=28.14 E-value=1.1e+02 Score=22.53 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=46.3
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEE-c-CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhh
Q 009895 438 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMA-S-PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 514 (523)
Q Consensus 438 ~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~-~-~~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~ 514 (523)
++..+++|+.. + |-.|++.+.++.+... ....+++. + .++...+.....|..+.+.+..-...+.++++.+-+
T Consensus 47 ~~dlillD~~m-P--~~dG~e~~~~ir~~~~-~~~~ii~~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~v~~ 121 (123)
T d1dz3a_ 47 RPDILLLDIIM-P--HLDGLAVLERIRAGFE-HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 121 (123)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHHHCS-SCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CCCEEEEcCCC-C--CCCHHHHHHHHHhcCC-CCCeEEEEECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 46789999943 4 4458998888876543 33444443 3 345666666678888877654445556666665443
No 19
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=27.43 E-value=48 Score=24.95 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=46.7
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
.++..+++|+.- +.+| |.+.+.++.+.-..++..+++... +++..+.....|..+.+.+..-...+.++++.+
T Consensus 50 ~~~dlii~D~~m-P~~~--G~el~~~lr~~~~~~~~pii~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~v 124 (129)
T d1p6qa_ 50 NPHHLVISDFNM-PKMD--GLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAV 124 (129)
T ss_dssp SCCSEEEECSSS-CSSC--HHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHH
T ss_pred CCCCeEEeeeec-CCCC--hHHHHHHHHhCcccCCCeEEEEEecCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 456789999864 5554 888888776655556677766654 455566666778888776543344444555443
No 20
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=27.23 E-value=51 Score=24.57 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=35.9
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHHCCCccccCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW--QVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~ 498 (523)
.++..+++|+.- + |.+|++.+.++.+. ..+..+++..... +....-.+.|..+.+.+
T Consensus 46 ~~~dlvi~D~~m-p--~~~G~e~~~~lr~~--~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~K 104 (123)
T d1dbwa_ 46 VRNGVLVTDLRM-P--DMSGVELLRNLGDL--KINIPSIVITGHGDVPMAVEAMKAGAVDFIEK 104 (123)
T ss_dssp CCSEEEEEECCS-T--TSCHHHHHHHHHHT--TCCCCEEEEECTTCHHHHHHHHHTTCSEEEES
T ss_pred cCCcEEEEeccC-c--cccchHHHHHHHhc--CCCCeEEEEEeeCCHHHHHHHHHCCCCEEEEC
Confidence 456789999955 3 45699999888653 3345555555443 34444446777776654
No 21
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=25.31 E-value=58 Score=24.98 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 512 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~ 512 (523)
..+..+++|+ .+..+ +|.+.+.++.+.-+-+++.+++... +++.++.....|..+.+.+..-...+.+.++.+
T Consensus 55 ~~pdlIllD~-~mP~~--~G~el~~~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~l 129 (144)
T d1i3ca_ 55 PRPNLILLDL-NLPKK--DGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGI 129 (144)
T ss_dssp CCCSEEEECS-CCSSS--CHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCCEEEEEC-ccccc--cchHHHHHHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 4567999999 44545 4999888887655556676666654 345555556678877765433333344444443
No 22
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=23.64 E-value=40 Score=25.06 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=39.3
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~ 498 (523)
.++..+++|+.. +.+| |.+.+.++.+.-..++..+++.... ++.+......|..+.+.+
T Consensus 43 ~~~dlil~D~~m-p~~~--G~~l~~~lr~~~~~~~~pvi~lt~~~~~~~~~~~~~~G~~d~l~K 103 (121)
T d1zesa1 43 PWPDLILLDWML-PGGS--GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITK 103 (121)
T ss_dssp SCCSEEEECSSC-TTSC--HHHHHHHHHHSTTTTTSCEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred cCCCEEEeecCC-CCCC--HHHHHHHHHhCccCCCCeEEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 457899999864 5554 8888888876555567777776554 333344446677777654
No 23
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.10 E-value=1.1e+02 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=38.0
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR 480 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 480 (523)
.+++-+++| +....+|......+.++.++++++|..++++.-+
T Consensus 167 ~~P~llilD-EPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHd 209 (254)
T d1g6ha_ 167 TNPKMIVMD-EPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 209 (254)
T ss_dssp TCCSEEEEE-STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred hCcCchhhc-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 457889999 7889999999999999999999999999998654
No 24
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}
Probab=23.06 E-value=2.3e+02 Score=24.61 Aligned_cols=72 Identities=13% Similarity=-0.012 Sum_probs=42.2
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC---H-HHHHHHHHCCCccc-cCCcccccCHHHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR---W-QVIHKLKSAKLLDR-IGKGCVYLSVAEAMEA 511 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~---~-~v~~~l~~~gl~~~-~~~~~if~s~~~Al~~ 511 (523)
....+|+||+++- -+|...+..+....+.....+.. .++.++ + .+++.|+. |..-+ +| ..+|.+||-+.
T Consensus 61 ~g~D~v~iD~EHg-~~~~~~~~~~i~a~~~~~~~~~~-~iVRvp~~~~~~I~~~LD~-Ga~GIivP---~V~s~eea~~~ 134 (299)
T d1izca_ 61 TKPDFVWIDVEHG-MFNRLELHDAIHAAQHHSEGRSL-VIVRVPKHDEVSLSTALDA-GAAGIVIP---HVETVEEVREF 134 (299)
T ss_dssp TCCSEEEEETTTS-CCCHHHHHHHHHHHHHHTTTCSE-EEEECCTTCHHHHHHHHHH-TCSEEEET---TCCCHHHHHHH
T ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHHHHHHhCCCCCC-eEEeCCCCChHHHHHHHHh-CcCeeecc---ccccHHHHHHH
Confidence 5688999999985 55666655555544443333333 344443 3 46666665 44433 44 56677777665
Q ss_pred Hhh
Q 009895 512 CLT 514 (523)
Q Consensus 512 ~~~ 514 (523)
.+.
T Consensus 135 v~~ 137 (299)
T d1izca_ 135 VKE 137 (299)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 25
>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.06 E-value=70 Score=23.74 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhhcccccc
Q 009895 464 HKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFAAL 520 (523)
Q Consensus 464 ~~~~~~~g~~l~l~~~-~~~v~~~l~~~gl~~~~~~~~if~s~~~Al~~~~~~~~~~~ 520 (523)
.+.+++.|+++++|+- -+..++.|+..|+.-... .-.+++||++...+.+-+.+
T Consensus 58 ~~~l~~~~vd~vi~~~iG~~~~~~L~~~GI~v~~~---~~~~v~eal~~~~~g~L~~~ 112 (124)
T d1eo1a_ 58 AQIIANNGVKAVIASSPGPNAFEVLNELGIKIYRA---TGTSVEENLKLFTEGNLEEI 112 (124)
T ss_dssp HHHHHHTTCCEEEECCSSHHHHHHHHHHTCEEEEC---CSCCHHHHHHHHHTTCSCEE
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHHhCCCCcC
Confidence 3445567999999974 678899999998853322 23578999998776555443
No 26
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.22 E-value=43 Score=28.51 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIH 485 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~ 485 (523)
.+++-++|| +.-+++|......|.++.+++.+++.++.++.-++++.+
T Consensus 224 ~~~~llllD-Ep~~~Ld~~~~~~l~~~l~~~~~~~~qviv~TH~~~~~~ 271 (292)
T g1f2t.1 224 GEISLLILD-EPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 271 (292)
T ss_dssp SSCSEEEEE-SCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG
T ss_pred CCCCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeecHHHHH
Confidence 346789999 889999999999999999999988889999988887654
No 27
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.40 E-value=61 Score=17.40 Aligned_cols=14 Identities=7% Similarity=0.301 Sum_probs=6.8
Q ss_pred HhhhHHHHHHHHHH
Q 009895 345 ASVEIGLLAAVTIS 358 (523)
Q Consensus 345 ~~~~~gi~~Gi~~s 358 (523)
..+..|+.+|+.++
T Consensus 12 ialffgiavgiifa 25 (32)
T d2e74e1 12 IALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheee
Confidence 34444555555443
No 28
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=20.95 E-value=1.9e+02 Score=24.54 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQV 483 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 483 (523)
.+++.+++| +..+.+|......+.++.++++++|.+++++.-.-+.
T Consensus 166 ~~P~llilD-EPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~ 211 (258)
T d1b0ua_ 166 MEPDVLLFD-EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 211 (258)
T ss_dssp TCCSEEEEE-STTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred cCCCEEEec-cccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHH
Confidence 457788888 7899999999999999999999999998888755433
No 29
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.00 E-value=81 Score=23.66 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCC
Q 009895 437 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGK 498 (523)
Q Consensus 437 ~~~~~vIlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~~ 498 (523)
.++..+++|+.- + |..|.+.+.++.+.. ....+.+.... ++.+......|..+.+.+
T Consensus 51 ~~~dlillD~~m-P--~~dG~el~~~ir~~~--~~~pii~lt~~~~~~~~~~~~~~G~~~~l~K 109 (133)
T d2ayxa1 51 NHIDIVLSDVNM-P--NMDGYRLTQRIRQLG--LTLPVIGVTANALAEEKQRCLESGMDSCLSK 109 (133)
T ss_dssp SCCSEEEEEESS-C--SSCCHHHHHHHHHHH--CCSCEEEEESSTTSHHHHHHHHCCCEEEEES
T ss_pred cCceEEEEeccC-C--CCCHHHHHHHHHHhC--CCCCEEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence 467899999955 3 445888888887653 34566655543 344444555788877654
Done!