Your job contains 1 sequence.
>009896
MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ
QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG
RLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPAR
KKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH
DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA
EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFE
KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL
WKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL
LNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009896
(523 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2101268 - symbol:AT3G49000 species:3702 "Arabi... 1331 6.7e-136 1
UNIPROTKB|F1SDD7 - symbol:POLR3C "Uncharacterized protein... 207 3.3e-27 2
UNIPROTKB|Q2TBL4 - symbol:POLR3C "DNA-directed RNA polyme... 200 1.6e-26 2
UNIPROTKB|Q9BUI4 - symbol:POLR3C "DNA-directed RNA polyme... 203 1.9e-26 2
UNIPROTKB|F1MUY3 - symbol:POLR3C "DNA-directed RNA polyme... 200 2.6e-26 2
UNIPROTKB|E2R8J4 - symbol:POLR3C "Uncharacterized protein... 196 4.2e-25 2
UNIPROTKB|E2R8N8 - symbol:POLR3C "Uncharacterized protein... 196 5.1e-25 2
MGI|MGI:1921664 - symbol:Polr3c "polymerase (RNA) III (DN... 198 3.3e-24 2
DICTYBASE|DDB_G0268080 - symbol:rpc3 "RNA polymerase III ... 193 5.0e-24 2
UNIPROTKB|E9PHH9 - symbol:POLR3C "DNA-directed RNA polyme... 173 1.7e-23 2
RGD|1311545 - symbol:Polr3c "polymerase (RNA) III (DNA di... 187 3.6e-23 2
ZFIN|ZDB-GENE-040426-992 - symbol:polr3c "polymerase (RNA... 277 3.6e-22 2
UNIPROTKB|G4N9Y3 - symbol:MGG_03225 "Uncharacterized prot... 178 2.8e-15 2
FB|FBgn0038057 - symbol:CG12267 species:7227 "Drosophila ... 138 1.3e-12 3
ASPGD|ASPL0000011321 - symbol:AN8272 species:162425 "Emer... 118 7.1e-11 3
CGD|CAL0005140 - symbol:orf19.2847 species:5476 "Candida ... 124 2.6e-10 2
WB|WBGene00016750 - symbol:C48E7.2 species:6239 "Caenorha... 117 3.1e-09 2
POMBASE|SPAPB1E7.03 - symbol:rpc82 "DNA-directed RNA poly... 152 2.1e-07 1
>TAIR|locus:2101268 [details] [associations]
symbol:AT3G49000 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR008806 Pfam:PF05645 EMBL:CP002686
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 UniGene:At.22360
KO:K03023 InterPro:IPR013197 Pfam:PF08221 EMBL:AY099634
EMBL:BT010381 IPI:IPI00537035 RefSeq:NP_566914.1 UniGene:At.43222
ProteinModelPortal:Q8LPK6 SMR:Q8LPK6 PRIDE:Q8LPK6
EnsemblPlants:AT3G49000.1 GeneID:824061 KEGG:ath:AT3G49000
TAIR:At3g49000 HOGENOM:HOG000082749 InParanoid:Q8LPK6 OMA:VAYELEQ
PhylomeDB:Q8LPK6 ProtClustDB:CLSN2917391 ArrayExpress:Q8LPK6
Genevestigator:Q8LPK6 Uniprot:Q8LPK6
Length = 523
Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
Identities = 267/532 (50%), Positives = 379/532 (71%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 3 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGP--KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E D +C ++ GLL
Sbjct: 63 QHNCVQAFSIEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEELDSKCGAVLDGLL 122
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E+
Sbjct: 123 SNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKEKE 177
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G++
Sbjct: 178 PAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEGKR 236
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 237 KQRDVDTSDS-----SSGVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLEVG 291
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVDASS 352
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV+ +
Sbjct: 292 RSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVNEVN 351
Query: 353 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 412
DSY +D++ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EKKD
Sbjct: 352 DSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEKKD 411
Query: 413 APKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM+HA+LNLSLR++
Sbjct: 412 TPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLSLRLA 471
Query: 472 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+LFHDF
Sbjct: 472 HELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 523
>UNIPROTKB|F1SDD7 [details] [associations]
symbol:POLR3C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR008806
Pfam:PF05645 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 InterPro:IPR013197
Pfam:PF08221 OMA:GKMTMSA GeneTree:ENSGT00390000002799 EMBL:CU606940
Ensembl:ENSSSCT00000007330 Uniprot:F1SDD7
Length = 508
Score = 207 (77.9 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 72/308 (23%), Positives = 140/308 (45%)
Query: 223 GEKEKNSNNVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 281
G++ ++S+ GE K K D + + + ++AN + F + R + + V
Sbjct: 199 GKRRRSSDEDATGEPKAKRPKHATDNKEPSPDDGIYWQANLDRFHQHFRDQAIVSAVANR 258
Query: 282 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLV 340
+D ++ ++ ML+ + ++ T +S P + E+ +S G N++ + L
Sbjct: 259 MDQTSSEIVRTMLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLT 313
Query: 341 QLGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
L + L FV S DS Y I+ K + +ESVV +R+G RIFRL+ +
Sbjct: 314 LLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK- 372
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILW 452
+ LE ++ D + K+A +LYK+ + ++ ++++ T A F L+ VN
Sbjct: 373 KHLEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAA 432
Query: 453 KHVLDEMFHAALNLSLRVSYELDREKELLN--------LPADKRTGPLQDRYNRIRKVRI 504
+ +L + + + NL R +E K LL + + + TG +D+ I ++
Sbjct: 433 RMLLHKCYKSVANLIERRQFETKENKRLLEKSQRVEAIITSMQATGAEEDQLQEIEEMIT 492
Query: 505 LLESSQMK 512
E Q++
Sbjct: 493 APERQQLE 500
Score = 174 (66.3 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 48/181 (26%), Positives = 88/181 (48%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+L H+V+RCP L+P +E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----LVPATENSD 170
Query: 178 P 178
P
Sbjct: 171 P 171
>UNIPROTKB|Q2TBL4 [details] [associations]
symbol:POLR3C "DNA-directed RNA polymerase III subunit
RPC3" species:9913 "Bos taurus" [GO:0045089 "positive regulation of
innate immune response" evidence=ISS] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR008806
Pfam:PF05645 GO:GO:0005634 GO:GO:0003677 GO:GO:0045087
GO:GO:0006351 GO:GO:0051607 GO:GO:0045089 GO:GO:0003899
GO:GO:0032728 EMBL:BC109972 IPI:IPI00729638 RefSeq:NP_001033600.1
UniGene:Bt.14013 STRING:Q2TBL4 PRIDE:Q2TBL4 GeneID:507314
KEGG:bta:507314 CTD:10623 eggNOG:NOG262914 HOGENOM:HOG000046475
HOVERGEN:HBG059543 InParanoid:Q2TBL4 KO:K03023 OrthoDB:EOG4HQDJ8
NextBio:20868006 InterPro:IPR013197 Pfam:PF08221 Uniprot:Q2TBL4
Length = 533
Score = 200 (75.5 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 66/269 (24%), Positives = 122/269 (45%)
Query: 223 GEKEKNSNNVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 281
G++ ++S+ GE K K D + + ++AN + F + R + + V
Sbjct: 199 GKRRRSSDEDATGEPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANR 258
Query: 282 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLV 340
+D ++ ++ ML+ + +V T + P + E+ +S G N++ + L
Sbjct: 259 MDQTSSEIVRTMLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLT 313
Query: 341 QLGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
L + L FV S DS Y I+ K + +ESVV +R+G RIFRL+ +
Sbjct: 314 LLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK- 372
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILW 452
+ LE ++ D + K+A +LYK+ + ++ ++++ T A F L+ VN
Sbjct: 373 KHLEQKQVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAA 432
Query: 453 KHVLDEMFHAALNLSLRVSYELDREKELL 481
+ +L + + NL R +E K LL
Sbjct: 433 RMLLHRCYKSVANLIERRQFETKENKRLL 461
Score = 176 (67.0 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 52/183 (28%), Positives = 92/183 (50%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V T Q + +Y + +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV----TYQVH-KRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE--E 175
+T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +E +
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPATENSD 170
Query: 176 EGP 178
GP
Sbjct: 171 TGP 173
Score = 44 (20.5 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 445 KVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRI 504
K N+++L K E A++ + +L +E++ P ++ L+ N+
Sbjct: 455 KENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNK------ 508
Query: 505 LLESSQMKLDDAILLFHDF 523
L++ ++++D+ I L +
Sbjct: 509 -LDACEIQVDETIFLLESY 526
>UNIPROTKB|Q9BUI4 [details] [associations]
symbol:POLR3C "DNA-directed RNA polymerase III subunit
RPC3" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IMP]
[GO:0045089 "positive regulation of innate immune response"
evidence=IMP] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=TAS] [GO:0006359 "regulation of transcription from RNA
polymerase III promoter" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR008806 Pfam:PF05645 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0045089 Reactome:REACT_1788 GO:GO:0006359
GO:GO:0005666 GO:GO:0003899 GO:GO:0032728 GO:GO:0006386
GO:GO:0006385 CTD:10623 eggNOG:NOG262914 HOGENOM:HOG000046475
HOVERGEN:HBG059543 KO:K03023 OrthoDB:EOG4HQDJ8 InterPro:IPR013197
Pfam:PF08221 EMBL:U93867 EMBL:AY091463 EMBL:AJ238221 EMBL:AJ238222
EMBL:AJ238223 EMBL:AJ238224 EMBL:AJ238225 EMBL:AJ238226
EMBL:AJ238227 EMBL:AJ238228 EMBL:AJ238229 EMBL:AJ238230
EMBL:AJ238231 EMBL:AJ238232 EMBL:AJ238233 EMBL:AJ238234
EMBL:BC002586 IPI:IPI00007948 RefSeq:NP_006459.3
RefSeq:XP_003960209.1 UniGene:Hs.591457 PDB:2XUB PDB:2XV4
PDBsum:2XUB PDBsum:2XV4 ProteinModelPortal:Q9BUI4 SMR:Q9BUI4
DIP:DIP-59078N STRING:Q9BUI4 PhosphoSite:Q9BUI4 DMDM:60393871
PRIDE:Q9BUI4 DNASU:10623 Ensembl:ENST00000334163
Ensembl:ENST00000584371 GeneID:101060460 GeneID:10623
KEGG:hsa:101060460 KEGG:hsa:10623 UCSC:uc001eog.3
GeneCards:GC01M145592 HGNC:HGNC:30076 HPA:HPA027508 HPA:HPA027516
neXtProt:NX_Q9BUI4 PharmGKB:PA134870963 InParanoid:Q9BUI4
OMA:GKMTMSA PhylomeDB:Q9BUI4 EvolutionaryTrace:Q9BUI4
GenomeRNAi:10623 NextBio:40364 ArrayExpress:Q9BUI4 Bgee:Q9BUI4
CleanEx:HS_POLR3C Genevestigator:Q9BUI4 GermOnline:ENSG00000186141
Uniprot:Q9BUI4
Length = 534
Score = 203 (76.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 65/269 (24%), Positives = 123/269 (45%)
Query: 223 GEKEKNSNNVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 281
G++ ++S+ GE K K D + + ++AN + F + R + + V
Sbjct: 199 GKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANR 258
Query: 282 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLV 340
+D ++ ++ ML+ + ++ T +S P + E+ +S G N++ + L
Sbjct: 259 MDQTSSEIVRTMLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLT 313
Query: 341 QLGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
L + L FV S DS Y I+ K + +ESVV +R+G RIFRL+ +
Sbjct: 314 LLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK- 372
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILW 452
+ +E ++ D + K+A +LYK+ + ++ ++++ T A F L+ VN
Sbjct: 373 KHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAA 432
Query: 453 KHVLDEMFHAALNLSLRVSYELDREKELL 481
+ +L + + NL R +E K LL
Sbjct: 433 RMLLHRCYKSIANLIERRQFETKENKRLL 461
Score = 172 (65.6 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 47/181 (25%), Positives = 89/181 (49%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 170
Query: 178 P 178
P
Sbjct: 171 P 171
Score = 49 (22.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 16/79 (20%), Positives = 38/79 (48%)
Query: 445 KVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRI 504
K N+++L K E A++ + +L +E++ P ++ L+ N+
Sbjct: 455 KENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNK------ 508
Query: 505 LLESSQMKLDDAILLFHDF 523
L++S++++D+ I L +
Sbjct: 509 -LDASEIQVDETIFLLESY 526
>UNIPROTKB|F1MUY3 [details] [associations]
symbol:POLR3C "DNA-directed RNA polymerase III subunit
RPC3" species:9913 "Bos taurus" [GO:0045089 "positive regulation of
innate immune response" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008806 Pfam:PF05645 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
IPI:IPI00729638 UniGene:Bt.14013 InterPro:IPR013197 Pfam:PF08221
OMA:GKMTMSA GeneTree:ENSGT00390000002799 EMBL:DAAA02007324
EMBL:DAAA02007325 Ensembl:ENSBTAT00000028832 Uniprot:F1MUY3
Length = 533
Score = 200 (75.5 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 66/269 (24%), Positives = 122/269 (45%)
Query: 223 GEKEKNSNNVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 281
G++ ++S+ GE K K D + + ++AN + F + R + + V
Sbjct: 199 GKRRRSSDEDATGEPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANR 258
Query: 282 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLV 340
+D ++ ++ ML+ + +V T + P + E+ +S G N++ + L
Sbjct: 259 MDQTSSEIVRTMLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLT 313
Query: 341 QLGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
L + L FV S DS Y I+ K + +ESVV +R+G RIFRL+ +
Sbjct: 314 LLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK- 372
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILW 452
+ LE ++ D + K+A +LYK+ + ++ ++++ T A F L+ VN
Sbjct: 373 KHLEQKQVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAA 432
Query: 453 KHVLDEMFHAALNLSLRVSYELDREKELL 481
+ +L + + NL R +E K LL
Sbjct: 433 RMLLHRCYKSVANLIERRQFETKENKRLL 461
Score = 174 (66.3 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 50/183 (27%), Positives = 92/183 (50%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y + +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE--E 175
+T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +E +
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPATENSD 170
Query: 176 EGP 178
GP
Sbjct: 171 TGP 173
Score = 44 (20.5 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 445 KVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRI 504
K N+++L K E A++ + +L +E++ P ++ L+ N+
Sbjct: 455 KENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNK------ 508
Query: 505 LLESSQMKLDDAILLFHDF 523
L++ ++++D+ I L +
Sbjct: 509 -LDACEIQVDETIFLLESY 526
>UNIPROTKB|E2R8J4 [details] [associations]
symbol:POLR3C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008806 Pfam:PF05645 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 InterPro:IPR013197 Pfam:PF08221
GeneTree:ENSGT00390000002799 EMBL:AAEX03011037
Ensembl:ENSCAFT00000017917 Uniprot:E2R8J4
Length = 511
Score = 196 (74.1 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 65/269 (24%), Positives = 122/269 (45%)
Query: 223 GEKEKNSNNVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 281
G++ ++S+ GE K K D + + ++AN + F + R + + V
Sbjct: 199 GKRRRSSDEDAAGEPKAKRPKHNTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANR 258
Query: 282 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLV 340
+D ++ ++ ML+ + ++ T ++ P + E+ +S G N++ + L
Sbjct: 259 MDQTSSEIVRTMLRMS-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLT 313
Query: 341 QLGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
L + L FV S DS Y I+ K + +ESVV +R+G RIFRL+ +
Sbjct: 314 LLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK- 372
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILW 452
+ LE ++ D + K+A +LYK+ ++ ++++ T A F L+ VN
Sbjct: 373 KHLEQKQVEDFAMIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAA 432
Query: 453 KHVLDEMFHAALNLSLRVSYELDREKELL 481
+ +L + + NL R +E K LL
Sbjct: 433 RMLLHRCYKSIANLIERRQFETKENKRLL 461
Score = 166 (63.5 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 44/166 (26%), Positives = 82/166 (49%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163
+T+ K++ DR + ++G +D + T V+L H+V+RCP
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP 161
>UNIPROTKB|E2R8N8 [details] [associations]
symbol:POLR3C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045089 "positive regulation of innate immune
response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008806 Pfam:PF05645 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10623
KO:K03023 InterPro:IPR013197 Pfam:PF08221 OMA:GKMTMSA
GeneTree:ENSGT00390000002799 EMBL:AAEX03011037 RefSeq:XP_540277.2
ProteinModelPortal:E2R8N8 Ensembl:ENSCAFT00000017901 GeneID:483159
KEGG:cfa:483159 NextBio:20857601 Uniprot:E2R8N8
Length = 534
Score = 196 (74.1 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
Identities = 65/269 (24%), Positives = 122/269 (45%)
Query: 223 GEKEKNSNNVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 281
G++ ++S+ GE K K D + + ++AN + F + R + + V
Sbjct: 199 GKRRRSSDEDAAGEPKAKRPKHNTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANR 258
Query: 282 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLV 340
+D ++ ++ ML+ + ++ T ++ P + E+ +S G N++ + L
Sbjct: 259 MDQTSSEIVRTMLRMS-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLT 313
Query: 341 QLGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
L + L FV S DS Y I+ K + +ESVV +R+G RIFRL+ +
Sbjct: 314 LLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK- 372
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILW 452
+ LE ++ D + K+A +LYK+ ++ ++++ T A F L+ VN
Sbjct: 373 KHLEQKQVEDFAMIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAA 432
Query: 453 KHVLDEMFHAALNLSLRVSYELDREKELL 481
+ +L + + NL R +E K LL
Sbjct: 433 RMLLHRCYKSIANLIERRQFETKENKRLL 461
Score = 166 (63.5 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
Identities = 44/166 (26%), Positives = 82/166 (49%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163
+T+ K++ DR + ++G +D + T V+L H+V+RCP
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP 161
>MGI|MGI:1921664 [details] [associations]
symbol:Polr3c "polymerase (RNA) III (DNA directed)
polypeptide C" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=ISO]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=ISO]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR008806 Pfam:PF05645 MGI:MGI:1921664 GO:GO:0005634
GO:GO:0003677 GO:GO:0045087 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10623
eggNOG:NOG262914 HOGENOM:HOG000046475 HOVERGEN:HBG059543 KO:K03023
OrthoDB:EOG4HQDJ8 InterPro:IPR013197 Pfam:PF08221 OMA:GKMTMSA
EMBL:AK016716 EMBL:BC026793 IPI:IPI00136782 IPI:IPI00421263
RefSeq:NP_083201.1 UniGene:Mm.276043 ProteinModelPortal:Q9D483
SMR:Q9D483 STRING:Q9D483 PhosphoSite:Q9D483 PaxDb:Q9D483
PRIDE:Q9D483 DNASU:74414 Ensembl:ENSMUST00000029741
Ensembl:ENSMUST00000141377 Ensembl:ENSMUST00000154679 GeneID:74414
KEGG:mmu:74414 UCSC:uc008qoc.2 GeneTree:ENSGT00390000002799
InParanoid:Q9D483 NextBio:340699 Bgee:Q9D483 CleanEx:MM_POLR3C
Genevestigator:Q9D483 GermOnline:ENSMUSG00000028099 Uniprot:Q9D483
Length = 533
Score = 198 (74.8 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 61/268 (22%), Positives = 123/268 (45%)
Query: 223 GEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHL 282
G++ ++S+ GE + D + + + ++ N + F + R + + V +
Sbjct: 199 GKRRRSSDEDATGEPKAKKPRYTDNKEPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRM 258
Query: 283 DDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQ 341
D ++ ++ ML+ + ++ T +S P + E+ +S G N++ + L
Sbjct: 259 DQTSSEIVRTMLRMS-----EITTPSSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTL 313
Query: 342 LGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGR 395
L + L F+ S DS + I+ K + +ESV+ +R+G RIFRL+ + +
Sbjct: 314 LADDPLEFIGKSGDSGGGMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQK-K 372
Query: 396 LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWK 453
LE ++ D + K+A +LYK+ + ++L++++ T A F L+ VN +
Sbjct: 373 HLEQKQVEDFAMIPAKEAKDMLYKMLSENFILLQEIPKTPDHAPSRTFYLYTVNVLSAAR 432
Query: 454 HVLDEMFHAALNLSLRVSYELDREKELL 481
+L + + NL R +E K LL
Sbjct: 433 MLLHRCYKSIANLIERRQFETKENKRLL 460
Score = 156 (60.0 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 42/166 (25%), Positives = 80/166 (48%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T+ S +QVK AL VLI
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLVLYHVHK-----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163
+T+ K++ DR + ++G +D + V+L H+V+RCP
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP 161
Score = 52 (23.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 39/174 (22%), Positives = 81/174 (46%)
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL-ETDKISD----TTF----VEK 410
+K +E Q E+ + +K +D ++++LS++ LL E K D TF V
Sbjct: 371 KKHLEQKQVEDFAMIPAKE-AKDM--LYKMLSENFILLQEIPKTPDHAPSRTFYLYTVNV 427
Query: 411 KDAPK-ILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 469
A + +L++ +K L+E+ RQ + K N+++L K E A++ +
Sbjct: 428 LSAARMLLHRCYKSIANLIER------RQFET---KENKRLLEKSQRVEAIMASMQATGA 478
Query: 470 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+L +E++ P ++ L+ N+ L++S++++D+ I L +
Sbjct: 479 EEVQLQEIEEMITAPERQQLETLKRNVNK-------LDASEIQVDETIFLLESY 525
>DICTYBASE|DDB_G0268080 [details] [associations]
symbol:rpc3 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0032774 "RNA
biosynthetic process" evidence=IEA;ISS] [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] dictyBase:DDB_G0268080
GenomeReviews:CM000150_GR EMBL:AAFI02000003 GO:GO:0006359
GO:GO:0005666 GO:GO:0003899 eggNOG:NOG262914 KO:K03023
InterPro:IPR013197 Pfam:PF08221 RefSeq:XP_647538.1 STRING:Q55FJ5
PRIDE:Q55FJ5 EnsemblProtists:DDB0216314 GeneID:8616345
KEGG:ddi:DDB_G0268080 OMA:AIYNTRE Uniprot:Q55FJ5
Length = 666
Score = 193 (73.0 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 58/207 (28%), Positives = 102/207 (49%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGP----LTRQNVKRYTELSDEQVKNALLVLIQ 60
Y K A+ ++ FGD V KV E L+++G + Q++ L+ +++K LLVLIQ
Sbjct: 2 YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61
Query: 61 QNCV--QAF----TTEQ-----PDGP-KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ 108
N V + F T ++ P P +++ Y + N +HR+RF KF+ + +
Sbjct: 62 HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDE 121
Query: 109 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSL----RETLVKLVTAHYVERCPA 164
+++ L++HGRL + + +A ++ D D + +T KL+ ++ R P
Sbjct: 122 AAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRAP- 180
Query: 165 SEPLLMPISEEEGPARKKGSKSAKKIG 191
P P+S++E SK AKK+G
Sbjct: 181 -RP--RPVSDQE--TSNALSKEAKKVG 202
Score = 163 (62.4 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 63/318 (19%), Positives = 146/318 (45%)
Query: 226 EKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDG 285
+++S+ T +++ + +D+ + DE V++ N+E FI + K C D V +
Sbjct: 352 DQSSSTTTTSSRQQQN--GMDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQ 409
Query: 286 AANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRA--SLVQL 342
+ + +AM++ + + + + + +I EE + ++ + M + S++Q
Sbjct: 410 SGLLFNAMVKLCKRSIRSNQDSLTSCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQA 469
Query: 343 GELSFV---------DASSD--SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 391
S V +SS+ +Y ++ II I + + VES++ +++G + R+F+LL
Sbjct: 470 SRPSMVTKMVSKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLLL 529
Query: 392 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQ 449
LLE +I++ + + +L+ + + + ++++ + + F L+ V+
Sbjct: 530 IKN-LLEPKQIAELAMIPPNECKALLFNMMQKNIIRLQEIPRSSDHFANRTFYLFFVDLP 588
Query: 450 ILWKHVLDEMFHAALNLSLRVSYELDREKELLN----LPADKRTGPLQDRYNRIRKVRIL 505
+ +++F A N R+ EL+ K+ L L D+ T Y + ++
Sbjct: 589 TIIATFTEDIFKAIYNTRERLKSELEPHKDALEKLTQLDEDQITEDQAKIYKKTDRITQT 648
Query: 506 LESSQMKLDDAILLFHDF 523
L + + LD+ +L + F
Sbjct: 649 LLTVILNLDNDLLHLYSF 666
Score = 45 (20.9 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 21/80 (26%), Positives = 30/80 (37%)
Query: 222 VGEKEKNSNNVTPGEKRKHDVLELDECGVADE---QSVVYRANFEGFIRRLRHKGCIDHV 278
VG N NNV +K+ D L G + SV AN + L K +
Sbjct: 201 VGGGGANGNNVGAHQKKDSDPFALPSVGFSSNGPLSSVDNSANDAESLEILTGKSSTTTI 260
Query: 279 RAHLDDGAANVLSAMLQATS 298
+ G A SA ++T+
Sbjct: 261 PSQPKKGTAKKTSAKPKSTA 280
Score = 43 (20.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 225 KEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYR 259
+E+ + + P + + +LDE + ++Q+ +Y+
Sbjct: 606 RERLKSELEPHKDALEKLTQLDEDQITEDQAKIYK 640
>UNIPROTKB|E9PHH9 [details] [associations]
symbol:POLR3C "DNA-directed RNA polymerase III subunit
RPC3" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR008806 Pfam:PF05645
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 EMBL:AL160282
GO:GO:0003899 InterPro:IPR013197 Pfam:PF08221 GeneID:101060460
KEGG:hsa:101060460 HGNC:HGNC:30076 IPI:IPI00642130
RefSeq:XP_003960212.1 ProteinModelPortal:E9PHH9 SMR:E9PHH9
PRIDE:E9PHH9 Ensembl:ENST00000369294 UCSC:uc009wix.3
ArrayExpress:E9PHH9 Bgee:E9PHH9 Uniprot:E9PHH9
Length = 411
Score = 173 (66.0 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 51/215 (23%), Positives = 101/215 (46%)
Query: 223 GEKEKNSNNVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 281
G++ ++S+ GE K K D + + ++AN + F + R + + V
Sbjct: 199 GKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANR 258
Query: 282 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLV 340
+D ++ ++ ML+ + ++ T +S P + E+ +S G N++ + L
Sbjct: 259 MDQTSSEIVRTMLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLT 313
Query: 341 QLGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
L + L FV S DS Y I+ K + +ESVV +R+G RIFRL+ +
Sbjct: 314 LLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK- 372
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429
+ +E ++ D + K+A +LYK+ + ++ ++
Sbjct: 373 KHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQ 407
Score = 172 (65.6 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 47/181 (25%), Positives = 89/181 (49%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 170
Query: 178 P 178
P
Sbjct: 171 P 171
>RGD|1311545 [details] [associations]
symbol:Polr3c "polymerase (RNA) III (DNA directed) polypeptide
C" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO;ISS]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=ISO;ISS]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR008806 Pfam:PF05645
RGD:1311545 GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10623
eggNOG:NOG262914 HOGENOM:HOG000046475 HOVERGEN:HBG059543 KO:K03023
OrthoDB:EOG4HQDJ8 InterPro:IPR013197 Pfam:PF08221 OMA:GKMTMSA
GeneTree:ENSGT00390000002799 EMBL:BC083667 IPI:IPI00368669
RefSeq:NP_001012081.1 UniGene:Rn.35251 STRING:Q5XIL3 PRIDE:Q5XIL3
Ensembl:ENSRNOT00000028815 GeneID:310685 KEGG:rno:310685
UCSC:RGD:1311545 InParanoid:Q5XIL3 NextBio:662443
Genevestigator:Q5XIL3 GermOnline:ENSRNOG00000033560 Uniprot:Q5XIL3
Length = 533
Score = 187 (70.9 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 59/268 (22%), Positives = 120/268 (44%)
Query: 223 GEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHL 282
G++ ++S+ GE + D + + ++ N + F + R + + V +
Sbjct: 199 GKRRRSSDEDAAGEPKAKKPRCTDNEEPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRM 258
Query: 283 DDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQ 341
D ++ ++ ML+ + ++ T + P + E+ +S G N++ + L
Sbjct: 259 DQTSSEIVRTMLRMS-----EITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTL 313
Query: 342 LGE--LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGR 395
L + L F+ + DS Y I+ K + +ESV+ +R+G RIFRL+ + +
Sbjct: 314 LADDPLEFIGKAGDSGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQK-K 372
Query: 396 LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWK 453
LE ++ D + K+A +LYK+ + ++ ++++ T A F L+ VN +
Sbjct: 373 HLEQKQVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAAR 432
Query: 454 HVLDEMFHAALNLSLRVSYELDREKELL 481
+L + + NL R +E K LL
Sbjct: 433 MLLHRCYKSIANLIERRQFETKENKRLL 460
Score = 158 (60.7 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 45/181 (24%), Positives = 87/181 (48%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T+ S +QVK AL VLI
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYHVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + V+L H+V+RCP L+P ++
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDTDSSD 170
Query: 178 P 178
P
Sbjct: 171 P 171
Score = 51 (23.0 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 16/79 (20%), Positives = 38/79 (48%)
Query: 445 KVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRI 504
K N+++L K E A++ + +L +E++ P ++ L+ N+
Sbjct: 454 KENKRLLEKSQRVEAIMASMQATGAEEVQLQEIEEMITAPERQQLETLKRNVNK------ 507
Query: 505 LLESSQMKLDDAILLFHDF 523
L++S++++D+ I L +
Sbjct: 508 -LDASEIQVDETIFLLESY 525
>ZFIN|ZDB-GENE-040426-992 [details] [associations]
symbol:polr3c "polymerase (RNA) III (DNA directed)
polypeptide C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR008806 Pfam:PF05645 ZFIN:ZDB-GENE-040426-992
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 CTD:10623
eggNOG:NOG262914 HOGENOM:HOG000046475 HOVERGEN:HBG059543 KO:K03023
OrthoDB:EOG4HQDJ8 InterPro:IPR013197 Pfam:PF08221 EMBL:BC046092
IPI:IPI00504965 RefSeq:NP_956526.1 UniGene:Dr.20880 STRING:Q7ZUX1
GeneID:393201 KEGG:dre:393201 InParanoid:Q7ZUX1 NextBio:20814265
ArrayExpress:Q7ZUX1 Uniprot:Q7ZUX1
Length = 539
Score = 277 (102.6 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 111/479 (23%), Positives = 215/479 (44%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CVQAFTTEQ 71
++ HFGD+V V L+R G LT + + T+L+ + VK +L VL+Q C
Sbjct: 12 LLQEHFGDVVENVGTHLIRNGVLTLRALAHETKLALDLVKKSLCVLVQHGMCTFGPGRRG 71
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQM 127
P GP +Y + ++ILH +R+ +++ + +V+ +L+ G++T+ K +
Sbjct: 72 PAGP---VEYHINCEHILHMLRYPRYIYTAKSLYGDTGELIVEEILQRGQMTMSSTVKTV 128
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 187
DR + EG +D + + +LV H+++RCP P M +E G +++
Sbjct: 129 ADRLTHNMPEGQSMDYNEVVSAFSRLVETHFLQRCP---P--MASAESSGTG---SAETP 180
Query: 188 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE 247
+ +P E LP ++ S+ GE ++ + +K K D E +
Sbjct: 181 PAVTQPSNPESHPDCYKLPYISLSGHGKRRRSSEDGEADQRA-----AKKAKTDSSECGD 235
Query: 248 CGVADEQSVV-YRANF--EGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 304
G+ + + + +F + I + K +D + +S + + ++A +
Sbjct: 236 EGIHWQVNFERFHLHFRDQAIISAVSCK--LDQTSGEIVRTMLR-MSEVTTSANAAFTQA 292
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIE 364
+ N + +L S Y + + + +TL V + +G+ D+ + ++ + +
Sbjct: 293 LSANEIFRALPSNYN-IARPILDQYLTL-LVDDPMEFVGKAG--DSGGGMFVVNLHRALA 348
Query: 365 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 424
+ESVV +R+G + RIFRLL + R LE ++ D + K+A ++LY L +
Sbjct: 349 NLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKEMLYTLLSEN 407
Query: 425 YLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ ++++ T A F L+ VN+ + +L + NL R YE K LL
Sbjct: 408 LVQLQEIPKTPDHAPSRTFYLYAVNQLPTARLLLQHCYKTVGNLIERRLYETKENKRLL 466
Score = 49 (22.3 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 17/79 (21%), Positives = 37/79 (46%)
Query: 445 KVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRI 504
K N+++L K E A+L + + +L +E++ P ++ L+ N+
Sbjct: 460 KENKRLLEKSQRIEAILASLQATGAEATQLTEVEEMITAPERQQLESLRHHINK------ 513
Query: 505 LLESSQMKLDDAILLFHDF 523
L+S + ++D+ I L +
Sbjct: 514 -LDSGENQVDETIFLLESY 531
>UNIPROTKB|G4N9Y3 [details] [associations]
symbol:MGG_03225 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0030448
"hyphal growth" evidence=IMP] [GO:0048315 "conidium formation"
evidence=IMP] InterPro:IPR008806 Pfam:PF05645 GO:GO:0009405
GO:GO:0003677 GO:GO:0006351 GO:GO:0048315 GO:GO:0030448
EMBL:CM001234 GO:GO:0003899 KO:K03023 InterPro:IPR013197
Pfam:PF08221 RefSeq:XP_003716754.1 EnsemblFungi:MGG_03225T0
GeneID:2676459 KEGG:mgr:MGG_03225 Uniprot:G4N9Y3
Length = 667
Score = 178 (67.7 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 60/257 (23%), Positives = 126/257 (49%)
Query: 283 DDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL 342
+DG AN +S +++ +K + + S P + + + E +K + + L +R L+ L
Sbjct: 415 EDGGANGIS-VIEYDEELDKLLHRQQSAPPTTNGMKESKVKFKEPKESRLSQMRQHLLLL 473
Query: 343 GELS--FV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLET 399
E S F+ + +++DFE ++ Q E+++V+ + GR + R+ R++ K G++ E
Sbjct: 474 CESSQGFLRHCGNGQWTVDFEPLVRRLQETELDTVLERTVGRHSLRLIRIVRKRGKVDEK 533
Query: 400 DKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLD 457
+ + + K KI+ ++ G++ ++++ R +S LW + + +LD
Sbjct: 534 S-LPNQAMMSKGTVHKIMLEMQMHGFVDVQEVPKDSTRNAKSTIFLWFCHTESSLSQLLD 592
Query: 458 EMFHAALNLSLRVSYELDRE--KELLNL---PADK--RTGPLQ----DRYNRIRKVRILL 506
+ L L+V E+ R+ +E+L P K L+ DRY++ R++ +
Sbjct: 593 NTYKTMLRC-LQVR-EVHRQNAREVLRFVERPDIKGREQEALEKKYFDRYDQYRRIEDKI 650
Query: 507 ESSQMKLDDAILLFHDF 523
+ M+LDD I + D+
Sbjct: 651 LAHVMRLDDIISILRDY 667
Score = 95 (38.5 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 30/127 (23%), Positives = 58/127 (45%)
Query: 7 TKHAVH----VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKH VI + +G+L +++ LL +G T + YT L+ Q+++ L VLIQ N
Sbjct: 4 TKHLAELCSLVIDDVYGELPSRIFSTLLIRGRSTLPQLVHYTSLTSRQLRHGLAVLIQHN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
+ + P +AN+ N+ +R K ++ + +++Q ++ G
Sbjct: 64 LLYYSSGSGPTAYEANSAAAY---NL---IRMGKVADLVGTLHGEAAKDVIQSIMVLGNT 117
Query: 123 TLKQMFD 129
+ + D
Sbjct: 118 RIGDLRD 124
>FB|FBgn0038057 [details] [associations]
symbol:CG12267 species:7227 "Drosophila melanogaster"
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008806 Pfam:PF05645 Pfam:PF02002 EMBL:AE014297
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:NOG262914
KO:K03023 InterPro:IPR013197 Pfam:PF08221 InterPro:IPR024550
GeneTree:ENSGT00390000002799 EMBL:AY051718 RefSeq:NP_001189212.1
RefSeq:NP_650207.1 UniGene:Dm.4497 SMR:Q9VG60 STRING:Q9VG60
EnsemblMetazoa:FBtr0082635 EnsemblMetazoa:FBtr0303028 GeneID:41542
KEGG:dme:Dmel_CG12267 UCSC:CG12267-RA FlyBase:FBgn0038057
InParanoid:Q9VG60 OMA:ECVITER OrthoDB:EOG43R22W ChiTaRS:CG12267
GenomeRNAi:41542 NextBio:824322 Uniprot:Q9VG60
Length = 522
Score = 138 (53.6 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 50/240 (20%), Positives = 106/240 (44%)
Query: 251 ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSV 310
A + +V+ N + F + R +D + L + AA +L+ + + K S
Sbjct: 204 ARDSHMVWHLNHDRFHQDFRDTIMVDAIERKLGENAAECFKFILKIMYNTTDPWERKLSN 263
Query: 311 PLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQ--LGELSFV-DASSDSYSIDFEKIIEI 365
++ I + + + ++ LD + L + LG V D Y +D E E
Sbjct: 264 QITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDMEHAFES 323
Query: 366 AQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY 425
VE V+++R+G A RIFR++ + + +E + + + K+A + Y L+++ +
Sbjct: 324 LAFACVECVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKSLAYNLFQEQF 382
Query: 426 LLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ ++ + G + F L++V + + +LD + + N R ++E + K L+
Sbjct: 383 IHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKGLI 442
Score = 112 (44.5 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 33/151 (21%), Positives = 72/151 (47%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ V F +
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALAVLVKFRLVD-FAASKA 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ A +Y + +++L +R+ +++ ++ ++ + + L+ G T + +
Sbjct: 71 NPFLA--EYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGILLKCL 128
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163
+ E E +S R T ++++T HY+ + P
Sbjct: 129 A-ENENKAESPESYRNTFLEMITDHYIIKRP 158
Score = 42 (19.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNV 40
VH++ +G++ A + E L+ G T +
Sbjct: 94 VHLVQTKYGNVGASISEELINSGSDTATGI 123
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 489 TGPLQDRYNRIRKVRILLESSQMKLDDAILL 519
T P + N+++ L +++ LDD I L
Sbjct: 473 TPPECEILNKVKNRIKTLSKAELTLDDTIFL 503
>ASPGD|ASPL0000011321 [details] [associations]
symbol:AN8272 species:162425 "Emericella nidulans"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
InterPro:IPR008806 Pfam:PF05645 Pfam:PF02002 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000145
GO:GO:0003899 eggNOG:NOG262914 KO:K03023 InterPro:IPR013197
Pfam:PF08221 RefSeq:XP_681541.1 STRING:Q5ATV8 GeneID:2869139
KEGG:ani:AN8272.2 HOGENOM:HOG000048480 OMA:KAMSRCL
OrthoDB:EOG4X6GJ6 InterPro:IPR024550 Uniprot:Q5ATV8
Length = 623
Score = 118 (46.6 bits), Expect = 7.1e-11, Sum P(3) = 7.1e-11
Identities = 40/181 (22%), Positives = 82/181 (45%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E +V RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 444 NWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-RLQEISLLPFKDL 502
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + +L + + A R+
Sbjct: 503 RQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDTYKAMSRCLQRLK 562
Query: 472 YELDREKELLNLPADKRTGPLQDRY------NRIRKVRI---LLESSQMKLDDAILLFHD 522
+E R K+ L ++ Y +R+R+ R LL +LDD I + D
Sbjct: 563 FERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEVARLDDMIAVMRD 622
Query: 523 F 523
+
Sbjct: 623 Y 623
Score = 94 (38.1 bits), Expect = 7.1e-11, Sum P(3) = 7.1e-11
Identities = 30/111 (27%), Positives = 56/111 (50%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + + ++ ++FG+L ++ L R LT + T LS+ +++ AL+ +IQ
Sbjct: 1 MASQYAAELCMLLVEDNFGELFGRIFSTLHRYERLTLPRLLGLTRLSENRLRAALVAMIQ 60
Query: 61 QNCVQAFTTEQPDGP---KANTQ---YVVLFDNILHRV--RFAKFL-TILS 102
+ V +T + G AN Q Y++ IL V R K+ T++S
Sbjct: 61 HHLVHFYTAVEEGGVTYYSANMQAAYYLIRSGKILEFVEDRLGKYAATVMS 111
Score = 63 (27.2 bits), Expect = 7.1e-11, Sum P(3) = 7.1e-11
Identities = 23/96 (23%), Positives = 39/96 (40%)
Query: 216 TNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCI 275
TN SD E EK + GE + LD+ V E S+ R N+E LR++ +
Sbjct: 256 TNGVSDDNETEKARFDYDDGEDEDEENEWLDD-EVPMESSLTVRVNYEKLDVALRNRRFL 314
Query: 276 DHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVP 311
+ +A + +L+ K + + +P
Sbjct: 315 ELAERGAPPESAQIYDYLLRRIEYQTSKCRDASEIP 350
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 191 GEPETIEQQVVEAALPMEAMRFSVVTNVES-DVGEKEK 227
GE E E + ++ +PME+ +V N E DV + +
Sbjct: 275 GEDEDEENEWLDDEVPMESS-LTVRVNYEKLDVALRNR 311
>CGD|CAL0005140 [details] [associations]
symbol:orf19.2847 species:5476 "Candida albicans" [GO:0005816
"spindle pole body" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0042797 "tRNA transcription
from RNA polymerase III promoter" evidence=IEA] InterPro:IPR008806
Pfam:PF05645 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
EMBL:AACQ01000080 EMBL:AACQ01000079 GO:GO:0003899 eggNOG:NOG262914
KO:K03023 InterPro:IPR013197 Pfam:PF08221 RefSeq:XP_715778.1
RefSeq:XP_715829.1 ProteinModelPortal:Q5A246 STRING:Q5A246
GeneID:3642519 GeneID:3642585 KEGG:cal:CaO19.10366
KEGG:cal:CaO19.2847 Uniprot:Q5A246
Length = 595
Score = 124 (48.7 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 35/149 (23%), Positives = 72/149 (48%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+ D
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPTKNIKSALVSLIQLNCIY-YWQEEKD- 81
Query: 75 PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ---MFDRA 131
Y + +L V + + +++ + E++Q +L HG + ++ F+
Sbjct: 82 --RKFYYSLKETGLLLFVYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQFNHD 139
Query: 132 KSS--EKEGNLVDLDSLRETLVKLVTAHY 158
KS ++E + L + L+KL H+
Sbjct: 140 KSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
Score = 103 (41.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 59/274 (21%), Positives = 122/274 (44%)
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
K +L ++ + +E+ + + A I+RL K ID + + A + +S
Sbjct: 302 KEYILSIEN-KLVNEKKITFSARD---IQRLLPKD-IDFKNSVITPTFAKPKRPLENGSS 356
Query: 299 SAEKKVKTKNSVPLSLS-SIYEEVIKSEAGRNMTLDHVRASLVQL--G-ELSFV-DASSD 353
KK+K ++ + S S S S G ++ L+ + L L G +FV + S
Sbjct: 357 PTLKKIKLEDGIASSTSTSTSTSSSTSSNGTSIDLNTLEQHLKLLLNGTNTAFVNEISPG 416
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+Y+I F + I + E++V G A+RI R + KS +L + I + +++K
Sbjct: 417 NYTIPFSHLTNILKQNNFEALVKATLGDYAFRILRCV-KSMKLCDEKSICNGALLKEKTV 475
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
LY L K + ++++ + R + F L++ + ++ + + + + R+
Sbjct: 476 RSELYHLIKANIIEIQEVPRSADRAASKTFYLFRHKSNSNFNYLKNCLIYDMAEILNRIQ 535
Query: 472 YELDREKELLNLPADKRTGPLQDRYNRIRKVRIL 505
+ E ++L L K +D+Y R++++L
Sbjct: 536 -DFKLEHKIL-LEKYKLVEGQEDQYLLDRELKLL 567
>WB|WBGene00016750 [details] [associations]
symbol:C48E7.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] InterPro:IPR008806 Pfam:PF05645 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0010171
GO:GO:0000003 GO:GO:0006351 GO:GO:0003899 eggNOG:NOG262914
KO:K03023 InterPro:IPR013197 Pfam:PF08221 OMA:GKMTMSA
GeneTree:ENSGT00390000002799 EMBL:FO080501 PIR:T15175
RefSeq:NP_491807.1 ProteinModelPortal:Q8IG67 SMR:Q8IG67
STRING:Q8IG67 PaxDb:Q8IG67 EnsemblMetazoa:C48E7.2.1
EnsemblMetazoa:C48E7.2.2 EnsemblMetazoa:C48E7.2.3 GeneID:172321
KEGG:cel:CELE_C48E7.2 UCSC:C48E7.2 CTD:172321 WormBase:C48E7.2
HOGENOM:HOG000019756 InParanoid:Q8IG67 NextBio:875015
Uniprot:Q8IG67
Length = 544
Score = 117 (46.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 40/164 (24%), Positives = 76/164 (46%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V +I + FG +VAKV E +L++ L+ K ++S+ ++ ++ LI
Sbjct: 5 KYETQMCVIIIEDIFGKIVAKVMETILKESCQLSTLFYKLKGQISNTLIRKSVSTLINFG 64
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
F T D T YV D I H + + I + + L+ GRL
Sbjct: 65 ----FVTFHLD-TNNRTTYVADSDQIQHVISSPRACLIAKTLYGPAAESICVELISQGRL 119
Query: 123 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASE 166
T+ + R +++++ D+ +++ +L AH++ R P+ E
Sbjct: 120 TVSETIRRIQATDETAVFSDI---KKSFEELAAAHFLIRVPSVE 160
Score = 99 (39.9 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 47/232 (20%), Positives = 106/232 (45%)
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-ASLVQLGELS 346
NV M + + K + + S+ SL+ + + ++K E G N+ + A + + E
Sbjct: 270 NVAHLMFKINETRAKPMSME-SITASLTDL-QRLVK-ENGLNLAKPDIELACQILVDESD 326
Query: 347 FV-----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 401
+ +++ + +D + I ES++ +++ A R+ RLL ++ L+ ++
Sbjct: 327 GIIRKLGESNGGIFIVDIRRAIRQICRHHCESLIREQFEGRAIRVMRLL-ENRHYLDEEQ 385
Query: 402 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEM 459
+ + + K+A ++LY L ++GY+ + + + Q F L+ V+ + +++
Sbjct: 386 VEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLYYVDLPRTIRGLVEYT 445
Query: 460 FHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQM 511
NL +R +E K +L+ A+ +Q IR L E+S++
Sbjct: 446 CKLVRNLIVRQRHERTENKSVLDKDAN-----VQPIIENIRSSEQLDEASKL 492
Score = 58 (25.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 30/134 (22%), Positives = 62/134 (46%)
Query: 212 FSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRH 271
F++ TN+ + E S++ + KRK D E G A + +R N+ F LR
Sbjct: 176 FAISTNI-MEKKEGTSTSDSTSNNRKRKAD--STPEDGDAGQY---WRINWIRFNGYLRD 229
Query: 272 KGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMT 331
+ ID++ G L+ + T + +T+ + +++ + ++ ++ A + M+
Sbjct: 230 ELIIDYLIGGGSKGTMTNLNVKKEETIEDPQGDRTQY-ITQNVAHLMFKINETRA-KPMS 287
Query: 332 LDHVRASLVQLGEL 345
++ + ASL L L
Sbjct: 288 MESITASLTDLQRL 301
Score = 46 (21.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 453 KHVLDEMFHAALNL-SLRVSYELDREKELLNLPADKRT---GPLQDRYNRIRKVRILLES 508
K VLD+ + + ++R S +LD +L + + GP + + NR RK + L +
Sbjct: 464 KSVLDKDANVQPIIENIRSSEQLDEASKLAQIAEVEEMYLPGPDRAQLNRFRKAQATLLA 523
Query: 509 SQMKLDDAILLFHDF 523
+Q + +L F F
Sbjct: 524 AQDQSIRVLLSFKLF 538
>POMBASE|SPAPB1E7.03 [details] [associations]
symbol:rpc82 "DNA-directed RNA polymerase III complex
subunit Rpc82 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISO] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=ISO] [GO:0044732 "mitotic spindle pole body"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] InterPro:IPR008806 Pfam:PF05645 PomBase:SPAPB1E7.03
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003677
GO:GO:0006383 GO:GO:0005666 GO:GO:0003899 eggNOG:NOG262914
KO:K03023 InterPro:IPR013197 Pfam:PF08221 OMA:KAMSRCL
OrthoDB:EOG4X6GJ6 EMBL:DQ156225 RefSeq:NP_594129.1 STRING:Q9C106
EnsemblFungi:SPAPB1E7.03.1 GeneID:2543417 KEGG:spo:SPAPB1E7.03
NextBio:20804432 Uniprot:Q9C106
Length = 591
Score = 152 (58.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 78/389 (20%), Positives = 162/389 (41%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FGD + V LLR G LT +++ T L +++ AL+ L+Q
Sbjct: 1 MSQYAVELCEILVEEFFGDCCSAVASALLRHGRLTIPMLQKRTSLPGPKIRQALVSLMQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ V T + + T Y + I + +R K + ++SQ+ +Q+ +V+ L GR
Sbjct: 61 HMVLYVTVIE--NVREVTYYETQWKEIYNILRKGKDVYLISQKLNQEAASVVKYLSTQGR 118
Query: 122 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPL-LMPISEEEGPAR 180
+ ++F+ A + +G+ + +++ L +L+ Y + +P L+P+ ++E R
Sbjct: 119 ARVLEVFN-AFDKKVDGSDEESRMMQKNLTELI---YQKFLLVVQPRHLIPVGDQEMQLR 174
Query: 181 KKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT-PGEKRK 239
K K E + + V+ ++ +E + E G K ++ P ++RK
Sbjct: 175 IKHLDRRKSENVSEIKKNREVDDSVALEMLELRAADMSELQ-GLTRKPKESIPHPTKRRK 233
Query: 240 HDV-----LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
V + D + D+ + + + +R K + A L +
Sbjct: 234 RAVGSAPSVSTDLNNILDDDNSILVPDLSAHVRINSGKLSVLSKNARLTHWVERRIGKST 293
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLD-HVRASLVQLGELSFVDASSD 353
S + +S S + E RN D V +S+V + S AS++
Sbjct: 294 SLVYSHVLSMLEPRLFSISNQSPVFTLTTMELTRNFPNDIDVESSIVDK-QYSVNSASNE 352
Query: 354 SYSID-FEKIIEIAQNEEVESVVSKRYGR 381
++ ++ E+A+ + E V + R
Sbjct: 353 LRVMEKLNELDELAEEDNYEESVDENANR 381
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/245 (20%), Positives = 116/245 (47%)
Query: 297 TSSAEKKVKTK-NSVP-LSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD- 353
++S E +V K N + L+ YEE + A R + L+ L F+ +
Sbjct: 348 SASNELRVMEKLNELDELAEEDNYEESVDENANRKSKVLAQHLELLADCSLKFISKIGNR 407
Query: 354 ---SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 410
++++F + ++ + E E+ + +++G A R+ R++ G++ E ++++ + +
Sbjct: 408 GMGEWAVNFTHLTDMLRAIEYENFIEQKFGERAIRLLRIIKDKGKI-EEKQLANIALLRQ 466
Query: 411 KDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSL 468
+D +L + + G L ++++ + R F LW + +LDE++H L +
Sbjct: 467 RDLRTVLQAMAEIGALELQEVPRSSDRAPSKTFFLWFHRPDRAYSLLLDELYHVIARLYM 526
Query: 469 RVS------YELDREKELLNLPADKRTGPLQDRYNRIRKV-----RILLESSQMKLDDAI 517
R+ +L + E +++ ++ + ++K+ ++LL++S +LDD +
Sbjct: 527 RLRDARAQRAQLIEKAERIDIKGNEEQYLQKFEQAELKKLYSYEEKLLLQAS--RLDDMV 584
Query: 518 LLFHD 522
L+F D
Sbjct: 585 LVFRD 589
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 523 523 0.00090 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 606 (64 KB)
Total size of DFA: 271 KB (2144 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.06u 0.17s 51.23t Elapsed: 00:00:03
Total cpu time: 51.06u 0.17s 51.23t Elapsed: 00:00:03
Start: Sat May 11 11:54:45 2013 End: Sat May 11 11:54:48 2013