BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009896
(523 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|302143859|emb|CBI22720.3| unnamed protein product [Vitis vinifera]
Length = 524
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/528 (64%), Positives = 426/528 (80%), Gaps = 9/528 (1%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG LT +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDG----PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 116
NCVQAF +Q G P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GL
Sbjct: 61 HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120
Query: 117 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 176
L+HGRLTL+Q+ DRAKS++ EG V D+LRE+ +KLV AH+VERCPASEP L P SEEE
Sbjct: 121 LQHGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 180
Query: 177 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 236
PARK+G+KSAK + EP+TIEQ+ + AA PM+A RFSV+ N +DV +S NVT GE
Sbjct: 181 TPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDV----DDSPNVTAGE 236
Query: 237 KRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 295
KRK D LELD E G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+
Sbjct: 237 KRKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLE 296
Query: 296 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSY 355
AT S EKKVKT+NSVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QLG V +++SY
Sbjct: 297 ATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESY 356
Query: 356 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 415
S+D + IIE+AQN+EVES+ KRYGRDAYRIFRLLSKS RLLETDKISDTTFVEKKD K
Sbjct: 357 SVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAK 416
Query: 416 ILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
ILY+LWKD YL MEKL + G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL+
Sbjct: 417 ILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELE 476
Query: 476 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+E+E++ LP +KR G L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 477 QEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 524
>gi|359490507|ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
vinifera]
Length = 511
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/524 (63%), Positives = 421/524 (80%), Gaps = 14/524 (2%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG LT +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
NCVQAF +Q + P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GLL+HG
Sbjct: 61 HNCVQAFAIQQ-EAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLLQHG 119
Query: 121 RLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPAR 180
RLTL+Q+ DRAKS+++E V D+LRE+ +KLV AH+VERCPASEP L P SEEE PAR
Sbjct: 120 RLTLEQILDRAKSNQREP--VVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETPAR 177
Query: 181 KKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH 240
K+G+KSAK + EP+TIEQ+ + AA PM+A RFSV+ N +DV + +P RK
Sbjct: 178 KRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDD--------SPN--RKQ 227
Query: 241 DVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSS 299
D LELD E G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+AT S
Sbjct: 228 DALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRS 287
Query: 300 AEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDF 359
EKKVKT+NSVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QLG V +++SYS+D
Sbjct: 288 EEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDL 347
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
+ IIE+AQN+EVES+ KRYGRDAYRIFRLLSKS RLLETDKISDTTFVEKKD KILY+
Sbjct: 348 KNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAKILYQ 407
Query: 420 LWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
LWKD YL MEKL + G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL++E+E
Sbjct: 408 LWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQEQE 467
Query: 480 LLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
++ LP +KR G L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 468 IIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 511
>gi|224134849|ref|XP_002321920.1| predicted protein [Populus trichocarpa]
gi|222868916|gb|EEF06047.1| predicted protein [Populus trichocarpa]
Length = 519
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 302/530 (56%), Positives = 396/530 (74%), Gaps = 19/530 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++YG K+AVH+ITNHFG LVAKVC+CLL+KGPL + + RYTELS+ V+N LLVLIQ
Sbjct: 1 VSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQH 60
Query: 62 NCVQAFTTEQPDG----PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
NC+Q F E+ G K ++ Y+VLFDN+LHRVRF+KF+ I+SQEFD+ CV+L++ LL
Sbjct: 61 NCLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETLL 120
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLL-MPISEEE 176
+HGRL+ +Q+FD + G + ++L+E + KLV A YVERCP SEP L +P EE
Sbjct: 121 QHGRLSSEQIFDGFRDRSSSGGM---EALQENMHKLVMARYVERCPISEPFLALPSEEEA 177
Query: 177 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVG-EKEKNSNNVTPG 235
P R++G+KSAK EPET+EQ+V+ AA+P E MRFS N E +K +N+++ G
Sbjct: 178 APVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSSNIG 237
Query: 236 EKRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
+KRK D LE D + GVAD+Q ++R NFE FIRRLRHK CI+ VR LDD AA V +AML
Sbjct: 238 DKRKLDALESDIDGGVADKQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAATVFTAML 297
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-GELSFVDASSD 353
A+ S EKK+KT +SVPLS +SIY EVIKSE GRNMTLD+V + LV L FV +
Sbjct: 298 DASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVLVGLSSSPPFVRVVDN 357
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
SYSIDF+ IE+AQ + ES+V K+YG+DAYR+FRLLSK+GRLLETDKISD+ F+EKK+
Sbjct: 358 SYSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMFRLLSKAGRLLETDKISDSIFLEKKET 415
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
IL K+W+ YL MEKL+ A +QFLLWKVN L + VLD+MFHAALNLSLRV+YE
Sbjct: 416 ANILSKMWQGDYLQMEKLI---AGPTQFLLWKVNMINLRERVLDDMFHAALNLSLRVAYE 472
Query: 474 LDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
L+++KE+L+L D GP++++Y +++KVR LLESS+MKLDDAI++FHDF
Sbjct: 473 LEQQKEILHLGVD---GPMKEKYEKLKKVRFLLESSRMKLDDAIMIFHDF 519
>gi|255539431|ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
[Ricinus communis]
gi|223549895|gb|EEF51382.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
[Ricinus communis]
Length = 485
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 296/480 (61%), Positives = 370/480 (77%), Gaps = 24/480 (5%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
T++G K+A H+ITNHFG+LVAKVC+CLLRKGPLT Q V +TEL+ QVKN+LLVLIQ N
Sbjct: 4 TQHGIKYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
CVQA+ + D K T Y+ LFDNILHRVRF+KFL I+SQ+F + CV++V+GLLEHGRL
Sbjct: 64 CVQAYRS--GDDLKLTTHYIALFDNILHRVRFSKFLAIISQDFHKSCVDIVEGLLEHGRL 121
Query: 123 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 182
T+KQ+ DRA S N + LDS++E L KLV Y+E CPASEP+L P +EEE A+K+
Sbjct: 122 TVKQIVDRANSR----NSIGLDSVKENLCKLVNGRYIEHCPASEPVLAPPTEEEDRAKKR 177
Query: 183 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKN-SNNVTPGEKRKH 240
+KSAK + E ET+EQ+V+ A+PM+A RFSV + E D E ++N S++ G+K
Sbjct: 178 SAKSAKIVIESETLEQRVLAVAVPMDAKRFSVDLDTELKDDAENDQNKSSDKHVGDK--- 234
Query: 241 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 300
VA++Q V++RANFE FIRRLRHK CI++VR LDDGAA VLSAML A+ +
Sbjct: 235 ---------VAEDQVVLWRANFEEFIRRLRHKACIENVRGRLDDGAAIVLSAMLDASRTE 285
Query: 301 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE-LSFVDASSDSYSIDF 359
EKKVKT +SVPLSL+SIYEEVIK+E GRNMT+DH+ ++L QLG FV A D Y+IDF
Sbjct: 286 EKKVKTASSVPLSLNSIYEEVIKNENGRNMTIDHIESALGQLGSPPPFVKAVEDLYTIDF 345
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
+ IIE AQ++EVES+V KRYGRDAYRIFRLLSK+ RLLETDKISDT FVEKK+ KILYK
Sbjct: 346 KHIIEAAQSDEVESIVLKRYGRDAYRIFRLLSKASRLLETDKISDTIFVEKKETTKILYK 405
Query: 420 LWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
+W+D YLLMEKLV A + FLLWKVN+ LWK VLDEMFHA+LNLS+RV+YEL+++KE
Sbjct: 406 MWQDDYLLMEKLV---AGTATFLLWKVNKHTLWKQVLDEMFHASLNLSIRVAYELEQQKE 462
>gi|449446151|ref|XP_004140835.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Cucumis sativus]
Length = 518
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/527 (54%), Positives = 392/527 (74%), Gaps = 14/527 (2%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T+YG K+AVH++T HFG+LVAKVCE LLRKGPLT + + R+TEL+ QV N+LL+LIQ
Sbjct: 2 VMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQ 61
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEF--DQQCVELVQGLLE 118
NCVQAFT + D PK +T Y+ LF NILHR+RF+KF+ I SQ+ D+ C EL++GLL+
Sbjct: 62 HNCVQAFT-DFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEGLLQ 120
Query: 119 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
+GRL+++Q+ +RA+S + D + ++L KL+ AH+VERCPA EP L P EE P
Sbjct: 121 NGRLSMEQLVERAESRNHPIS----DVVHDSLFKLLNAHFVERCPAPEPTLSP-KVEEPP 175
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV-TNVESDVGEKEKNSNNVTPGEK 237
RK+G+K+AK PET+EQ+++EAA P+E +RFS+ TN E+ EK ++ + ++ G+K
Sbjct: 176 PRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEA---EKSEHHSQIS-GQK 231
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
RKHD LE+ + + +++RAN++ FIR LRHK CI+HVR+ DDG NVLSA+L+AT
Sbjct: 232 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 291
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYS- 356
S+EK VKT+ +VPLSL +IYEEV+K+E GR+MTLD V ASL LG D ++
Sbjct: 292 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKISMFTT 351
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+DF IIE AQ +EVES+V KRYGRDAYR+FR LSK+G L+ET+KISD++FV+K +APKI
Sbjct: 352 VDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKI 411
Query: 417 LYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
LY+LWKD YL MEK+ +T R S LLW+V+R LW+HVLDEM+HA+LNL LR+++E++
Sbjct: 412 LYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEE 471
Query: 477 EKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
KELL+LP D PL + + VR LL SS +KLDDA++LFHDF
Sbjct: 472 NKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 518
>gi|449522480|ref|XP_004168254.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Cucumis sativus]
Length = 518
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 286/527 (54%), Positives = 391/527 (74%), Gaps = 14/527 (2%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T+YG K+AVH++T HFG+LVAKVCE LLRKGPLT + + R+TEL+ QV N+LL+LIQ
Sbjct: 2 VMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQ 61
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEF--DQQCVELVQGLLE 118
NCVQAFT + D K +T Y+ LF NILHR+RF+KF+ I SQ+ D+ C EL++GLL+
Sbjct: 62 HNCVQAFT-DFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEGLLQ 120
Query: 119 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
+GRL+++Q+ +RA+S + D + ++L KL+ AH+VERCPA EP L P EE P
Sbjct: 121 NGRLSMEQLVERAESRNHPIS----DVVHDSLFKLLNAHFVERCPAPEPTLSP-KVEEPP 175
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV-TNVESDVGEKEKNSNNVTPGEK 237
RK+G+K+AK PET+EQ+++EAA P+E +RFS+ TN E+ EK ++ + ++ G+K
Sbjct: 176 PRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEA---EKSEHHSQIS-GQK 231
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
RKHD LE+ + + +++RAN++ FIR LRHK CI+HVR+ DDG NVLSA+L+AT
Sbjct: 232 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 291
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYS- 356
S+EK VKT+ +VPLSL +IYEEV+K+E GR+MTLD V ASL LG D ++
Sbjct: 292 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKISMFTT 351
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+DF IIE AQ +EVES+V KRYGRDAYR+FR LSK+G L+ET+KISD++FV+K +APKI
Sbjct: 352 VDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKI 411
Query: 417 LYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
LY+LWKD YL MEK+ +T R S LLW+V+R LW+HVLDEM+HA+LNL LR+++E++
Sbjct: 412 LYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEE 471
Query: 477 EKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
KELL+LP D PL + + VR LL SS +KLDDA++LFHDF
Sbjct: 472 NKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 518
>gi|356534135|ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Glycine max]
Length = 510
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/528 (54%), Positives = 387/528 (73%), Gaps = 23/528 (4%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+T++G K AVH+IT HFG +VAKVCE L GPLT + RYT+L+ +QV+N+LLVL+Q
Sbjct: 1 MVTQHGIKFAVHLITKHFGKIVAKVCENLFIHGPLTLDQLVRYTDLTKDQVRNSLLVLVQ 60
Query: 61 QNCVQAFTT--EQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 118
NCVQAF + + D + TQY+VLFD+ILHR+RF KFL I+S++ D++CV+L+ GLL
Sbjct: 61 HNCVQAFVSAPQDDDRLRVRTQYLVLFDSILHRLRFPKFLEIVSRKLDEECVKLLDGLLR 120
Query: 119 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
GRLTLKQM DR E N V +RETL KL+TA +VERCPA EP+ + S +E
Sbjct: 121 DGRLTLKQMVDR------EKNAVPTKVVRETLCKLLTARFVERCPAPEPV-VSTSFKETT 173
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
RK+G+KSAK PET+EQ+VV+AA+P + +RFS+ + V ++E NS++
Sbjct: 174 TRKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLAADTRCSV-DRETNSDDA------ 226
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
++ ++E VA E +++RANFE FIR LRHK I++VR DDG A VLSA+L+AT
Sbjct: 227 --QMISVEE-EVAKEGQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEATR 283
Query: 299 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSID 358
S +KKVKT+NSVPLSL +I EV+K++ GR MT+D +RASLVQLG S +SYSID
Sbjct: 284 SVQKKVKTENSVPLSLDTIITEVMKTDTGRTMTVDRIRASLVQLG-CSPSMILEESYSID 342
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
+KIIE A+NEEVES+V KRYG D YRIFRLL+K +TD+I+ +T VEKK+A K+LY
Sbjct: 343 LKKIIEPARNEEVESIVLKRYGTDGYRIFRLLAKDCCFHDTDQIAASTLVEKKEASKLLY 402
Query: 419 KLWKDGYLLMEKLVVT-GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 477
KLWKD YL MEK+ T GA+Q+ L+WKVN+ +LW++VLDEM+HAALNLSLR+++E +++
Sbjct: 403 KLWKDNYLYMEKVGATVGAKQTTILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFEQEKD 462
Query: 478 KELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+ELL +P DKR GPLQ +Y ++ V +LL SS MKLDDA++LFHDF
Sbjct: 463 EELLKVPKDKRQGPGPLQKKYKKLLNVWLLLGSSLMKLDDALMLFHDF 510
>gi|356574495|ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Glycine max]
Length = 518
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 288/532 (54%), Positives = 388/532 (72%), Gaps = 23/532 (4%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+TE+G K VH+IT HFG +VAKVCE L GPLT + RYT+ + +QV+N+LLVL+Q
Sbjct: 1 MVTEHGIKFGVHLITKHFGKIVAKVCEKLFSHGPLTLDQLVRYTDFTKDQVRNSLLVLVQ 60
Query: 61 QNCVQAFTTEQPDGP------KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 114
NC QAF + D + TQY+VLFDNI+HR+RF KFL I+S++ D++CV+L+
Sbjct: 61 HNCAQAFVSAPQDDDDDADRLRVRTQYLVLFDNIIHRLRFPKFLDIVSRKLDEECVKLLV 120
Query: 115 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 174
GLL GRLTLKQM DR S+ + N V +RETL KL+TA +VERCPA EP++ S
Sbjct: 121 GLLRDGRLTLKQMVDR--ESQGKENAVPTKVVRETLCKLLTARFVERCPAPEPVV-STSF 177
Query: 175 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 234
+E +K+G+KSAK PET+EQ+VV+AA+P + +RFS+ N+ S+V ++E NS++V
Sbjct: 178 KETTTKKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLTANMGSNV-DRETNSDDVP- 235
Query: 235 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
++ ++E VA E+ +++RANFE FIR LRHK I++VR DDG A VLSA+L
Sbjct: 236 -------MISVEE-DVAKEEQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVL 287
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 354
+AT S EKKVK NSVPLSL +I EV+K++ GR MT+D +RASLVQLG S +S
Sbjct: 288 EATGSVEKKVKMDNSVPLSLDTIITEVMKTDTGRTMTIDRIRASLVQLG-CSPSMILEES 346
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
Y ID +KIIE A+NEEVES+V KRYGRDAYR+FRLL+K +TD+I+ +T VEKK+A
Sbjct: 347 YCIDLKKIIEPARNEEVESIVLKRYGRDAYRMFRLLAKDCCFHDTDQIAASTLVEKKEAS 406
Query: 415 KILYKLWKDGYLLMEKLVVT-GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
K+LYKLWKD YL MEK+ T GA+Q L+WKVN+ +LW++VLDEM+HAALNLSLR+++E
Sbjct: 407 KLLYKLWKDNYLYMEKVGATAGAKQITILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFE 466
Query: 474 LDREKELLNLPADK--RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
++++ELL +P DK GPLQ +Y R+ VR+L+ SS +KLDDA++LFHDF
Sbjct: 467 QEKDEELLKVPKDKLREPGPLQKKYKRLLNVRLLMGSSLLKLDDALMLFHDF 518
>gi|297737009|emb|CBI26210.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/530 (54%), Positives = 371/530 (70%), Gaps = 20/530 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M EYG K AVH+I+ FGD AKVC+CLLRKG L ++ R +LS +QVK L VLIQ
Sbjct: 1 MTPEYGIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQ 60
Query: 61 QNCVQAFTTEQP----DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 116
NCVQAF E +GP TQY++LFDNILHR+RF K L I+S+E D++C EL +
Sbjct: 61 HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAF 120
Query: 117 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 176
L+HG LTL+Q+ DR S++ EGN D+LR + KLV AHYVERCPA +P L+P EE+
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEK 180
Query: 177 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDV-GEKE-KNSNNVTP 234
PARK + SAK + E E EQ + A P +A F V+T+ D+ G+K N V
Sbjct: 181 TPARKHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIGNPPGVVI 240
Query: 235 GEKRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 293
G+KRK D L+LD E G A E+ V +RAN++ + LRHK CI++VRA LD GAA VLSAM
Sbjct: 241 GKKRKQDALKLDTESGAASEKDVPWRANYKELVCHLRHKACIENVRARLDSGAAIVLSAM 300
Query: 294 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 353
L+AT SAEK VK + SV LS+S+I E V++SEAG +MTL+ +RASLVQLG +
Sbjct: 301 LEATQSAEKNVKEEISVLLSISTITEAVMQSEAGCSMTLERIRASLVQLGCHPNGVGADR 360
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+Y+ID +KIIE+AQN+EVES+V KRYGR+A+RIFRLLSKS LET KISDTTF+EKK+A
Sbjct: 361 TYNIDLKKIIELAQNDEVESMVLKRYGREAHRIFRLLSKSCCPLETTKISDTTFIEKKEA 420
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
KILYKLWKD L MEK+V+ +RQSQF+LWKV + W+H+LDEM+HAALNLS+++
Sbjct: 421 AKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHAALNLSIQI--- 477
Query: 474 LDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+ L DK G L++R R+ ILL++S MKLDDA++LFHDF
Sbjct: 478 -------IELRRDKHVGALRERDVRL---AILLQASLMKLDDALMLFHDF 517
>gi|297809071|ref|XP_002872419.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318256|gb|EFH48678.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 521
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 265/532 (49%), Positives = 377/532 (70%), Gaps = 23/532 (4%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +AVH+IT FG +V+KVCECLLRKGPL+ +++ R E ++ QVK+ L +LI
Sbjct: 3 MSEFGIVYAVHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNQVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGP--KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E +C ++ GLL
Sbjct: 63 QHNCVQAFSIEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEELGSECGAVLDGLL 122
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+GRLTL Q+ +R + S G + +++R++L KLV A +VER P+ EP+L ++++
Sbjct: 123 SNGRLTLGQLIERDRDS---GKTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKDQE 177
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK-EKNSNNVTPGE 236
PA+K+G+K+AK + EPET+E++VVEAA P++A+RF ++ E D + +N+T G+
Sbjct: 178 PAKKRGAKAAKILKEPETLEERVVEAATPVDAIRFPLI--FEEDFNSSLADDDSNITEGK 235
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
+++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 236 RKQRDVDSSDPSS-----RVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLEV 290
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVDAS 351
EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV
Sbjct: 291 GRPQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVTEM 350
Query: 352 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 411
+DSY +DF+ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR ++TDKI+D EKK
Sbjct: 351 NDSYIVDFKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVDTDKIADAALTEKK 410
Query: 412 DAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
D P+IL K+WKDGYL M+KL +TG FLLWKVN+ I+ + +LDEM+HA+LNL+LR++
Sbjct: 411 DTPQILLKMWKDGYLHMQKLAITGT-YVPFLLWKVNKLIVTRQMLDEMYHASLNLNLRLA 469
Query: 472 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+EL+ EKELL LP+DK GPL++R ++R R+LL S+ KLDDAI+LFHDF
Sbjct: 470 HELESEKELLMLPSDKLEGPLKERVKKVRAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|18408755|ref|NP_566914.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis
thaliana]
gi|20466336|gb|AAM20485.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
gi|34098883|gb|AAQ56824.1| At3g49000 [Arabidopsis thaliana]
gi|332644960|gb|AEE78481.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis
thaliana]
Length = 523
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 267/532 (50%), Positives = 379/532 (71%), Gaps = 21/532 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 3 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGP--KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E D +C ++ GLL
Sbjct: 63 QHNCVQAFSIEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEELDSKCGAVLDGLL 122
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E+
Sbjct: 123 SNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKEKE 177
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G++
Sbjct: 178 PAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEGKR 236
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 237 KQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLEVG 291
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVDASS 352
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV+ +
Sbjct: 292 RSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVNEVN 351
Query: 353 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 412
DSY +D++ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EKKD
Sbjct: 352 DSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEKKD 411
Query: 413 APKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM+HA+LNLSLR++
Sbjct: 412 TPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLSLRLA 471
Query: 472 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+LFHDF
Sbjct: 472 HELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 523
>gi|297816108|ref|XP_002875937.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321775|gb|EFH52196.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 521
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/531 (49%), Positives = 377/531 (70%), Gaps = 21/531 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +AVH+IT FG +V+KVCECLLRKGPL+ +++ R E ++ QVK+ L +LI
Sbjct: 3 MSEFGIVYAVHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNQVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGP--KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF ++++E +C ++ GLL
Sbjct: 63 QHNCVQAFSIEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRLVNEELGSECGAVLDGLL 122
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+GRLTL Q+ +R + S G + +++R++L KLV A +VER P+ EP+L ++E+
Sbjct: 123 SNGRLTLGQLIERDRGS---GKTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKEQE 177
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
PA+K+G+K+AK + EPET+E++VVEAA P++A+RF ++ ++ + +SN +T G++
Sbjct: 178 PAKKRGAKAAKILKEPETLEERVVEAATPVDAIRFPLIFEEDAHSSLADDDSN-ITEGKR 236
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
++ DV D V++ N+E FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 237 KQRDVDSSDPSS-----GVIWHPNYEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLEVG 291
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVDASS 352
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV +
Sbjct: 292 RSQEKKVKTDNSAPMSIGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVTEMN 351
Query: 353 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 412
DSY +DF+ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EKKD
Sbjct: 352 DSYIVDFKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEKKD 411
Query: 413 APKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
P+ L K+WKDGYL M+KL +TG FLLWKVN+ I+ + +LDEM+HA+LNL+LR+++
Sbjct: 412 TPQFLLKMWKDGYLHMQKLAITGT-YVPFLLWKVNKLIVTRQMLDEMYHASLNLNLRLAH 470
Query: 473 ELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
EL+ EKELL LP+DK GPL++R ++R R+LL S+ KLDDAI+LFHDF
Sbjct: 471 ELESEKELLMLPSDKLEGPLKERVIKVRAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|21553700|gb|AAM62793.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
Length = 521
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 266/532 (50%), Positives = 379/532 (71%), Gaps = 21/532 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 1 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 60
Query: 60 QQNCVQAFTTEQPDGP--KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I++++ D +C ++ GLL
Sbjct: 61 QHNCVQAFSIEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEQLDSKCGAVLDGLL 120
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E+
Sbjct: 121 SNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKEKE 175
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G++
Sbjct: 176 PAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEGKR 234
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 235 KQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLEVG 289
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVDASS 352
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV+ +
Sbjct: 290 RSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVNEVN 349
Query: 353 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 412
DSY +D++ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EKKD
Sbjct: 350 DSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEKKD 409
Query: 413 APKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM+HA+LNLSLR++
Sbjct: 410 TPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLSLRLA 469
Query: 472 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+LFHDF
Sbjct: 470 HELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|6522566|emb|CAB62010.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
Length = 529
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 261/542 (48%), Positives = 374/542 (69%), Gaps = 33/542 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 1 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 60
Query: 60 QQNCVQAFTTEQPDGP--KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E D +C ++ GLL
Sbjct: 61 QHNCVQAFSIEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEELDSKCGAVLDGLL 120
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E+
Sbjct: 121 SNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKEKE 175
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G++
Sbjct: 176 PAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEGKR 234
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 235 KQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLEVG 289
Query: 298 SSAEKKVKTK----------NSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS- 346
S EKK + + P+S+ SIYEEVIK+EAGR M + V A L QL S
Sbjct: 290 RSQEKKSTYEVLLTEFAIIFETAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSS 349
Query: 347 ----FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 402
FV+ +DSY +D++ II +AQ +E +VV +RYG++A+R+FR LS+ GR +ETDKI
Sbjct: 350 YLPAFVNEVNDSYIVDYKSIISVAQKDE--AVVMRRYGKEAFRMFRYLSQEGRFVETDKI 407
Query: 403 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMFH 461
+D EKKD P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM+H
Sbjct: 408 ADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYH 467
Query: 462 AALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFH 521
A+LNLSLR+++EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+LFH
Sbjct: 468 ASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFH 527
Query: 522 DF 523
DF
Sbjct: 528 DF 529
>gi|357444007|ref|XP_003592281.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
gi|355481329|gb|AES62532.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
Length = 505
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 263/532 (49%), Positives = 362/532 (68%), Gaps = 36/532 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G K AVH+IT HFG +VA V E LL GPLT + V RYTELS+E VKN+LLVLIQ
Sbjct: 1 MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQ 60
Query: 61 QNCVQAFT-TEQPDGPKA-NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 118
NCVQAFT DG + +Y+VLFDNI+HR+RF KF+ I+SQE D +CV +++GLL
Sbjct: 61 HNCVQAFTEAGDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKGLLR 120
Query: 119 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
GRLTLKQ+ D + E N + D++RE+L +L+ A YVERCP E ++ ++
Sbjct: 121 DGRLTLKQLVDMGQDKE---NAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGDDKK 177
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV--TNVESDVGEKEKNSNNVTPGE 236
R +K A+ PE E +VVEAA + +RFS+ T SD GE
Sbjct: 178 GRSTSNKKARVFKVPE--EHRVVEAAKRGDMIRFSLTAYTGCSSD-------------GE 222
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
+ D+ + VA E+S ++RANFE FIR LR K I++VRA +DDGAA VLSA+L+A
Sbjct: 223 TKLADISVAE--NVAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAILEA 280
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYS 356
T + +K VK + S P +L +I EV+K+E GR MT+D V+A+LVQLG ++
Sbjct: 281 TRNIDKNVKIEQSAPCTLDTISSEVMKTENGRTMTMDRVKAALVQLG-------CANQNI 333
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+DF++II +A+NEEVES+V KRYGRDAYR+FR L K + TD+I++ T VEKK+APK+
Sbjct: 334 VDFKRIIHLARNEEVESIVLKRYGRDAYRMFRHLLKENQFRPTDQIAEATLVEKKEAPKL 393
Query: 417 LYKLWKDGYLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
L+KLW++ YL MEKL V+ Q S L+WKVN+ +LW+HVLDEM+H ALNL LR+++E
Sbjct: 394 LFKLWRENYLQMEKLTVSMTSQNGTSPILMWKVNQPLLWEHVLDEMYHGALNLKLRMAFE 453
Query: 474 LDREKELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
++++E+LN+ R + PLQ +Y R+R V +LL+SS MKLDDA++LFHDF
Sbjct: 454 EEKDEEILNISKKTRNESAPLQKKYERLRNVLLLLKSSLMKLDDALMLFHDF 505
>gi|357444005|ref|XP_003592280.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
gi|355481328|gb|AES62531.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
Length = 468
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/487 (48%), Positives = 329/487 (67%), Gaps = 34/487 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G K AVH+IT HFG +VA V E LL GPLT + V RYTELS+E VKN+LLVLIQ
Sbjct: 1 MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQ 60
Query: 61 QNCVQAFT-TEQPDGPKA-NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 118
NCVQAFT DG + +Y+VLFDNI+HR+RF KF+ I+SQE D +CV +++GLL
Sbjct: 61 HNCVQAFTEAGDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKGLLR 120
Query: 119 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
GRLTLKQ+ D + E N + D++RE+L +L+ A YVERCP E ++ ++
Sbjct: 121 DGRLTLKQLVDMGQDKE---NAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGDDKK 177
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV--TNVESDVGEKEKNSNNVTPGE 236
R +K A+ PE E +VVEAA + +RFS+ T SD GE
Sbjct: 178 GRSTSNKKARVFKVPE--EHRVVEAAKRGDMIRFSLTAYTGCSSD-------------GE 222
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
+ D+ + VA E+S ++RANFE FIR LR K I++VRA +DDGAA VLSA+L+A
Sbjct: 223 TKLADISVAE--NVAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAILEA 280
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYS 356
T + +K VK + S P +L +I EV+K+E GR MT+D V+A+LVQLG ++
Sbjct: 281 TRNIDKNVKIEQSAPCTLDTISSEVMKTENGRTMTMDRVKAALVQLG-------CANQNI 333
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+DF++II +A+NEEVES+V KRYGRDAYR+FR L K + TD+I++ T VEKK+APK+
Sbjct: 334 VDFKRIIHLARNEEVESIVLKRYGRDAYRMFRHLLKENQFRPTDQIAEATLVEKKEAPKL 393
Query: 417 LYKLWKDGYLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
L+KLW++ YL MEKL V+ Q S L+WKVN+ +LW+HVLDEM+H ALNL LR+++E
Sbjct: 394 LFKLWRENYLQMEKLTVSMTSQNGTSPILMWKVNQPLLWEHVLDEMYHGALNLKLRMAFE 453
Query: 474 LDREKEL 480
++++E+
Sbjct: 454 EEKDEEV 460
>gi|147790067|emb|CAN75989.1| hypothetical protein VITISV_012194 [Vitis vinifera]
Length = 549
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 228/512 (44%), Positives = 303/512 (59%), Gaps = 76/512 (14%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M EYG K AVH+I+ FGD AKVC+CL+RKG L ++ R T+LS +QVK L VLIQ
Sbjct: 1 MTPEYGIKLAVHLISTDFGDHAAKVCDCLIRKGTLALDDIVRTTKLSPQQVKTYLKVLIQ 60
Query: 61 QNCVQAFTTEQ----PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 116
NCVQAF E +GP TQY++LFDNILHR+RF K L I+S+E D++C +L +
Sbjct: 61 HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEKLFEAF 120
Query: 117 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 176
L+HG LTL+Q+ DR S++ EGN D+LR + KLV AHYVERCPA +P L+P EE+
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEK 180
Query: 177 GPARKKGSKSAK-------KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
PARK + SAK + E E EQ + A P +A F V+T+ D+ +
Sbjct: 181 TPARKHDANSAKALTDSCQAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIG 240
Query: 230 NNVTPGEKRKHDVLE-------LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHL 282
N PG V + + G+A E+ V +RAN+ + CI++VRA L
Sbjct: 241 N--PPGVVIXKKVAQARCFKIGIQNLGLASEKDVPWRANY-------KELACIENVRARL 291
Query: 283 DDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL 342
D GAA VLSAML+AT SAEK VK + SV LS+++I E V++SEAG +MTL+ +RASLVQL
Sbjct: 292 DSGAAIVLSAMLEATQSAEKNVKEEISVLLSINTITEAVMQSEAGCSMTLERIRASLVQL 351
Query: 343 GELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 402
G + ++Y+I
Sbjct: 352 GCHPNGVGADETYNI--------------------------------------------- 366
Query: 403 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHA 462
DTTF+EKK+A KILYKLWKD L MEK+V+ +RQSQF+LWKV + W+H+LDEM+HA
Sbjct: 367 -DTTFIEKKEAAKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHA 425
Query: 463 ALNLSLRVSYELDREKELLNLPADKRTGPLQD 494
ALNLS+R+ EL+ + LL D+ GPLQ+
Sbjct: 426 ALNLSIRI-IELNSMETLLASCKDR--GPLQN 454
>gi|168046248|ref|XP_001775586.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673004|gb|EDQ59533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 520
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 198/532 (37%), Positives = 314/532 (59%), Gaps = 46/532 (8%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPD----GPKANT 79
KV +CL+ +GPL ++ R++EL+ +K++LLVL+Q +CVQA+ E P+ +T
Sbjct: 3 KVVKCLVYRGPLALADIARFSELNPSTLKSSLLVLVQHSCVQAYKVEHEGVGSAPPRVST 62
Query: 80 QYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGN 139
YV L DNILHR+RF KFL + ++ ++ LV+GLLEHGRLTL+Q+ R ++ K G
Sbjct: 63 SYVPLCDNILHRMRFPKFLLAVREDLGEEVGSLVEGLLEHGRLTLEQITQR--TAAKAGK 120
Query: 140 LVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE----PET 195
V + ++ET KLV A ++ERCPA+EP L P P +K +AK G +T
Sbjct: 121 KV-VKGVKETFAKLVAARFIERCPAAEPSLQPKDSNVEPPKKVPRGAAKARGPILSAQDT 179
Query: 196 IE---QQVVEAALPMEAMRFSV---VTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
+ Q++++AA P E RF + + + + + + E + P ++ +D+L
Sbjct: 180 VSEVVQRILKAAAPDETDRFRLPISMAGMSAPIVDNETTDPSSLP--QKVNDIL------ 231
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 309
DE+ V++R NFE F+R+LRH+ C+D VR LD GAA +LSAMLQAT + E + +S
Sbjct: 232 -IDEKEVLWRVNFEQFLRKLRHQTCVDMVRTRLDAGAAIILSAMLQATGNQETSARQHHS 290
Query: 310 VPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-----GELSFVDASSDSYSIDFEKIIE 364
VPLS+ +I + V + G++MTL+ +R + QL G L+ +SY+I+ IIE
Sbjct: 291 VPLSMDAITQAVRSTPDGQHMTLERIRGLVAQLASDGVGFLAKAGEGGNSYAINMHNIIE 350
Query: 365 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 424
Q EVE +V +R+GR+ RI+RLL+ G+ LE +I + K+ ++LY+L K+
Sbjct: 351 ARQRNEVEGIVLQRFGRECCRIYRLLAIKGQ-LEQKQIGERAMA-PKNVKELLYRLLKEQ 408
Query: 425 YLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL- 480
Y+ +++ + + LWKVN + + VLD+++HAA NL LR ++E+ +E+E+
Sbjct: 409 YVQVQQEIAKTSEHIASKSIYLWKVNYRAVLYRVLDDLYHAATNLCLRHAHEIQKEQEVG 468
Query: 481 ---------LNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+ P + QD+ RI ++ +L++S +KLDDAILLFHDF
Sbjct: 469 LFMITINTYTHPPLSQAAPAQQDQVKRISRITKILDASLLKLDDAILLFHDF 520
>gi|414881489|tpg|DAA58620.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
Length = 507
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 200/529 (37%), Positives = 316/529 (59%), Gaps = 28/529 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ Q++ R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLQDIVRRLELSPGQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
NCVQA+T+ + G + T Y+ +FDN+LHR+RF+KFL+++ + + L++GLL++G
Sbjct: 61 HNCVQAYTSPRGAGDRTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPEVSEVLLEGLLQNG 120
Query: 121 RLTLKQMFDRA--KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
RLT +Q+ +R K SE + L + +R KLV AHYVERCP EP P++ E+
Sbjct: 121 RLTFEQLVERTIFKVSE-DSPLPTREEVRMNFNKLVYAHYVERCPKPEPFFDPLAVEQPT 179
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
+ +K ++ K + ++EQ+VV A +A RFS + D K+ ++ G KR
Sbjct: 180 STRK--RAPKTVEAVLSLEQKVVCTAALSDAERFSEIPYF-MDGSSSAKDGHHAVAGNKR 236
Query: 239 KHDVLELDE-CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
KH+ LE+DE + E V++R NFE FI L+ K C + +A + G + A +A
Sbjct: 237 KHETLEVDEDDSIIAESEVLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAFFEAN 296
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSI 357
+ +V + I E V + E G +MTLDH+ + L L E + + + ++
Sbjct: 297 VTNND----NKTVTSPIDGILERVGQKEGGMSMTLDHITSVLNDL-ECTSTANNPEEFTF 351
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
D K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+ + L
Sbjct: 352 DLNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGSPVETDEITDRTILDKQVVHETL 411
Query: 418 YKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
YKLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL V+Y
Sbjct: 412 YKLWKDEYIDSERVPSTSATGTGSAQFFVWRV-KNIYREHFMDNLYHAALNLRQMVNY-- 468
Query: 475 DREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
ELL L K L++R N +L + + D++++LFHDF
Sbjct: 469 --MAELL-LEGSKDEIKLRNRKN-------ILILALTRHDESLMLFHDF 507
>gi|115439167|ref|NP_001043863.1| Os01g0679000 [Oryza sativa Japonica Group]
gi|56202140|dbj|BAD73473.1| RNA polymerase III subunit-like protein [Oryza sativa Japonica
Group]
gi|113533394|dbj|BAF05777.1| Os01g0679000 [Oryza sativa Japonica Group]
gi|215765022|dbj|BAG86719.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 203/528 (38%), Positives = 306/528 (57%), Gaps = 27/528 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGPLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
NCVQAF + +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GLL++G
Sbjct: 61 HNCVQAFNAPRGNGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPES-EALLEGLLQNG 119
Query: 121 RLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPA 179
RLT Q+ +R S EG++ + +R KLV AHYVERCP EP P+ +E+ +
Sbjct: 120 RLTFGQLVERTISKVPEGSITPAREEIRMNFNKLVFAHYVERCPKPEPFFDPLVDEQSTS 179
Query: 180 RKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 239
+K ++ K + +I+++VV A +A RFS + + D + + G KRK
Sbjct: 180 SRK--RAPKTVEIALSIDKKVVNTAALSDAERFSEIPYIMEDASNANDSPRSSISGAKRK 237
Query: 240 HDVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
H+ LE D + +A E V++RANFE F L+ K C D + L G + A +A
Sbjct: 238 HNALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEAFFEA 296
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYS 356
+ + NSV ++ I E + + E G +MTLDH+ L +L S DS+
Sbjct: 297 SLME----RDNNSVTSPINGIMERLGQKEGGTSMTLDHITRVLEELN-CSPSSEDPDSFI 351
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+D +I+E ++NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+
Sbjct: 352 LDLSRIVEASRNEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQIVHGT 411
Query: 417 LYKLWKDGYLLMEKLVV-TGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
LYKLWKD Y+ E+++ TG +Q+ +W+V + + +D + HAALNL V+Y
Sbjct: 412 LYKLWKDDYIDTERILSGTGTGNTQYFVWRV-KNTFREQFIDNLCHAALNLRQMVNY--- 467
Query: 476 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
ELL L K L++R N +L + + DD+++LF DF
Sbjct: 468 -IAELL-LEGSKDDTKLRNRKN-------ILILALTRHDDSLMLFQDF 506
>gi|414881486|tpg|DAA58617.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
gi|414881487|tpg|DAA58618.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
gi|414881488|tpg|DAA58619.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
Length = 506
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 201/529 (37%), Positives = 317/529 (59%), Gaps = 29/529 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ Q++ R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLQDIVRRLELSPGQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
NCVQA+T+ + G + T Y+ +FDN+LHR+RF+KFL+++ + + V L++GLL++G
Sbjct: 61 HNCVQAYTSPRGAGDRTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPESEV-LLEGLLQNG 119
Query: 121 RLTLKQMFDRA--KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
RLT +Q+ +R K SE + L + +R KLV AHYVERCP EP P++ E+
Sbjct: 120 RLTFEQLVERTIFKVSE-DSPLPTREEVRMNFNKLVYAHYVERCPKPEPFFDPLAVEQPT 178
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
+ +K ++ K + ++EQ+VV A +A RFS + D K+ ++ G KR
Sbjct: 179 STRK--RAPKTVEAVLSLEQKVVCTAALSDAERFSEIPYF-MDGSSSAKDGHHAVAGNKR 235
Query: 239 KHDVLELDE-CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
KH+ LE+DE + E V++R NFE FI L+ K C + +A + G + A +A
Sbjct: 236 KHETLEVDEDDSIIAESEVLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAFFEAN 295
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSI 357
+ +V + I E V + E G +MTLDH+ + L L E + + + ++
Sbjct: 296 VTNND----NKTVTSPIDGILERVGQKEGGMSMTLDHITSVLNDL-ECTSTANNPEEFTF 350
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
D K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+ + L
Sbjct: 351 DLNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGSPVETDEITDRTILDKQVVHETL 410
Query: 418 YKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
YKLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL V+Y
Sbjct: 411 YKLWKDEYIDSERVPSTSATGTGSAQFFVWRV-KNIYREHFMDNLYHAALNLRQMVNY-- 467
Query: 475 DREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
ELL L K L++R N +L + + D++++LFHDF
Sbjct: 468 --MAELL-LEGSKDEIKLRNRKN-------ILILALTRHDESLMLFHDF 506
>gi|357135934|ref|XP_003569562.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Brachypodium distachyon]
Length = 505
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 201/529 (37%), Positives = 307/529 (58%), Gaps = 30/529 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LVAKVC+CLLR G L+ Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVGIISDHFGPLVAKVCDCLLRHGELSLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDG-PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 119
NCVQAF+ P G + T Y+ +FDN+LHR+RF+KFL+++ + + V L++GLL++
Sbjct: 61 HNCVQAFSA--PKGRDRTVTLYLAIFDNVLHRLRFSKFLSVIRADIPESEV-LIEGLLQN 117
Query: 120 GRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMP-ISEEEG 177
GRLT Q+ R S EG++ + +R L KLV AH+VERCP EP + P + ++
Sbjct: 118 GRLTFDQLVGRTISKVPEGSIRPAREEIRMNLNKLVHAHFVERCPKPEPFIDPLVVQQPT 177
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
+R++ K+ +K+ ++EQ++V A +A RFS + + D + S + K
Sbjct: 178 SSRRRAPKNFEKVI---SLEQKIVNTADLSDAERFSEIPYIIEDASDVNGCSRDPVDSAK 234
Query: 238 RKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 295
RK E+DE E V++RANFE F L+ K C D + L G + + +
Sbjct: 235 RKRGAFEVDEELNSTIAENEVLWRANFEQFTFCLKKKFCADRKKLKLKVGTHPIWESFCE 294
Query: 296 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSY 355
A + K +SV ++ I E + + E G +MTLD V L L + + + + ++Y
Sbjct: 295 ANLTE----KDTDSVTSPINGILERLRQKEGGASMTLDQVTRVLEDL-QCTTSNENPEAY 349
Query: 356 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 415
+ D K++E +NEE+ES+V K+YG+ A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 350 TFDLRKMVESCRNEEIESLVKKKYGQAAFTIFRLLVTQGGPVETDQIIDTTILDKQIVHS 409
Query: 416 ILYKLWKDGYLLMEKL-VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
LYKLWKD Y+ EK+ V G +QF +W+ + + +D ++HAALNL V+Y
Sbjct: 410 TLYKLWKDDYVDTEKISSVAGTGYAQFYVWRA-KSTFREQFIDNLYHAALNLRQMVNY-- 466
Query: 475 DREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
ELL L K L++R N +L + + DD+++LFHDF
Sbjct: 467 --IAELL-LEGSKDDTKLRNRKN-------ILILALTRHDDSLMLFHDF 505
>gi|300681505|emb|CBH32599.1| RNA polymerase III subunit RPC82 domain containing protein,
expressed [Triticum aestivum]
Length = 502
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 194/528 (36%), Positives = 299/528 (56%), Gaps = 31/528 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G A +I++HFG LVAKVC+CLLR G L + R +L QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAAGLISDHFGPLVAKVCDCLLRHGALQLTEIVRRLKLPQGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
NCVQAF++ P G + T Y+ +FDN+LHR+RF+KF++I+ + + L++GLL++G
Sbjct: 61 HNCVQAFSS--PRGDRTITLYLAIFDNVLHRLRFSKFISIIRADIPES-EALIEGLLQNG 117
Query: 121 RLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP- 178
RLT Q+ R S EG + + +R +LV A YVERCP +EP P +E+
Sbjct: 118 RLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFNPQEDEQSTG 177
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
AR++ K+A+++ ++EQ+VV A + RFS + D + +N G KR
Sbjct: 178 ARRRVPKTAEEV---LSLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPHNAVAGAKR 234
Query: 239 KHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
KH E+DE E V++R NFE FI L+ K C D + L G + + +A
Sbjct: 235 KHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEA 294
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYS 356
K NSV S++ I E++ + E G M++ ++ L+ +L + + ++
Sbjct: 295 NLPD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQCTTSDGEEFT 347
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 348 FDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQIVHST 407
Query: 417 LYKLWKDGYLLMEKLV-VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
LYKLW DGY+ EK+ G +QF +W+ + + +D ++HAALNL V+Y
Sbjct: 408 LYKLWNDGYIDTEKIASAAGTGYAQFFVWRA-KNTFREQFIDNLYHAALNLRQMVNY--- 463
Query: 476 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
ELL L K L++R N +L + + DD+++LFHDF
Sbjct: 464 -IAELL-LEGSKDETKLRNRKN-------ILILALTRHDDSLMLFHDF 502
>gi|242053989|ref|XP_002456140.1| hypothetical protein SORBIDRAFT_03g031160 [Sorghum bicolor]
gi|241928115|gb|EES01260.1| hypothetical protein SORBIDRAFT_03g031160 [Sorghum bicolor]
Length = 506
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 196/528 (37%), Positives = 312/528 (59%), Gaps = 27/528 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ + R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLLEIGRRLELSPAQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
NCVQA+T+ + G K T Y+ +FDN+LHR+RF+KFL+++ + + V L++GLL++G
Sbjct: 61 HNCVQAYTSPRGGGDKTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPESEV-LLEGLLQNG 119
Query: 121 RLTLKQMFDRAKSSEKEGN-LVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPA 179
RLT +Q+ +R EG+ L + +R KLV AHYVERCP SEP P++ E+ +
Sbjct: 120 RLTFEQLVERTIFKVPEGSPLPTREEIRMNFNKLVYAHYVERCPKSEPFFDPLAVEQPTS 179
Query: 180 RKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 239
+K ++ K + ++EQ+VV A +A RFS + + + ++ G KRK
Sbjct: 180 TRK--RAPKIVEAVLSLEQKVVSTAALSDAERFSQIPYF-MEGSSSANDGHHAVAGNKRK 236
Query: 240 HDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
H+ LE+D E + E ++R NFE FI L+ K C + +A + G + A +A
Sbjct: 237 HEALEVDEEDSIIAESEFLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAFFEANV 296
Query: 299 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSID 358
+ +V + I E V + E G +MTLD + + L L E + + + ++ D
Sbjct: 297 TNND----NKTVTSPIDGILERVGQKEGGTSMTLDQIISVLNDL-ECTSTTNNPEEFTFD 351
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+ + LY
Sbjct: 352 LNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGCPVETDEITDRTILDKQVVHETLY 411
Query: 419 KLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
KLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL ++Y
Sbjct: 412 KLWKDEYIDSERVPSTSGTGTGSTQFFVWRV-KNIYREHFMDHLYHAALNLRQMINY--- 467
Query: 476 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
ELL L K L++R N +L + + D++++LFHDF
Sbjct: 468 -MAELL-LEGSKDEIKLRNRKN-------ILVLALTRHDESLMLFHDF 506
>gi|326514466|dbj|BAJ96220.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 186/505 (36%), Positives = 284/505 (56%), Gaps = 29/505 (5%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVV 83
KVC+CLLR+G L Q + R L QVKN+LLVLIQ NCVQAF++ P G + T Y+
Sbjct: 10 KVCDCLLRQGALQLQEIVRRLNLPPGQVKNSLLVLIQHNCVQAFSSPSPRGDRTMTLYLT 69
Query: 84 LFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL 143
+F+N+LHR+RF+KF++++ + + L++GLL++GRLT Q+ R S EG +
Sbjct: 70 IFNNVLHRLRFSKFISVIRADIPES-EALIEGLLQNGRLTFDQLVGRTISKVPEGTIRPA 128
Query: 144 -DSLRETLVKLVTAHYVERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVV 201
+ +R +LV+A YVERCP +EP P +E+ ARK+ K+A+++ ++EQ+VV
Sbjct: 129 REEIRMNFNRLVSARYVERCPKAEPHFNPQEDEQSTTARKRAPKTAEEV---LSLEQKVV 185
Query: 202 EAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYR 259
A + RFS + D + +NV G KRKH E+DE E V++R
Sbjct: 186 NTATLSDPERFSEIPYSMEDASKTNDRPHNVVAGAKRKHGAFEVDEELNSTIAENEVLWR 245
Query: 260 ANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYE 319
NFE FI L+ K C D + L G + + +A + K NSV S+ I E
Sbjct: 246 VNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSIGGILE 301
Query: 320 EVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRY 379
++ + E G M++ ++ L +L ++ + ++ D K+IE +NEE+ES+V K+Y
Sbjct: 302 KLGQKEGGAAMSIGQIQPV---LEDLQCTTSTGEEFTFDLHKMIEACRNEEIESLVKKKY 358
Query: 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV-VTGARQ 438
G++A+ IFRLL G +ETD+I DTT ++K+ LYKLW DGY+ EK+ G
Sbjct: 359 GQEAFTIFRLLVTQGCAVETDQIIDTTILDKQIVHSTLYKLWNDGYIDTEKIASAAGTGY 418
Query: 439 SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNR 498
+QF +W+ + + +D ++HAALNL V+Y ELL L K L++R N
Sbjct: 419 AQFFVWRA-KNTFREQFVDNLYHAALNLRQMVNY----IAELL-LEGSKDETKLRNRKN- 471
Query: 499 IRKVRILLESSQMKLDDAILLFHDF 523
+L + + DD++LLF DF
Sbjct: 472 ------ILILALTRHDDSLLLFCDF 490
>gi|218188842|gb|EEC71269.1| hypothetical protein OsI_03266 [Oryza sativa Indica Group]
Length = 476
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 192/528 (36%), Positives = 291/528 (55%), Gaps = 57/528 (10%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGSLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
NCVQAF + +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GLL++G
Sbjct: 61 HNCVQAFNAPRGNGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPESEA-LLEGLLQNG 119
Query: 121 RLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPA 179
RLT Q+ +R S EG++ + +R KLV AHYVERCP EP P+ +E+ +
Sbjct: 120 RLTFGQLVERTISKVPEGSITPAREEIRMNFNKLVFAHYVERCPKPEPFFDPLVDEQSTS 179
Query: 180 RKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 239
+K ++ K + +I+++VV +A +A RFS + + D + + G KRK
Sbjct: 180 SRK--RAPKTVEIALSIDKKVVNSAALSDAERFSEIPYIMEDASNANDSPRSSISGAKRK 237
Query: 240 HDVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
H+ LE D + +A E V++RANFE F L+ K C D + L G + A +A
Sbjct: 238 HNALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEAFFEA 296
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYS 356
+ + NSV ++ I E + + E
Sbjct: 297 SLME----RDNNSVTSPINGIMERLGQKEG------------------------------ 322
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
D +I+E ++NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+
Sbjct: 323 -DLSRIVEASRNEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQIVHGT 381
Query: 417 LYKLWKDGYLLMEKLVV-TGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
LYKLWKD Y+ E+++ TG +Q+ +W+V + + +D + HAALNL V+Y
Sbjct: 382 LYKLWKDDYIDTERILSGTGTGNTQYFVWRV-KNTFREQFIDNLCHAALNLRQMVNY--- 437
Query: 476 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
ELL L K L++R N +L + + DD+++LF DF
Sbjct: 438 -IAELL-LEGSKDDTKLRNRKN-------ILILALTRHDDSLMLFQDF 476
>gi|222619044|gb|EEE55176.1| hypothetical protein OsJ_03008 [Oryza sativa Japonica Group]
Length = 423
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 168/447 (37%), Positives = 255/447 (57%), Gaps = 29/447 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGPLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
NCVQAF + +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GLL++G
Sbjct: 61 HNCVQAFNAPRGNGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPES-EALLEGLLQNG 119
Query: 121 RLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPAR 180
+T + + +R KLV AHYVERCP EP P+ +E+ +
Sbjct: 120 SITPAR-----------------EEIRMNFNKLVFAHYVERCPKPEPFFDPLVDEQSTSS 162
Query: 181 KKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH 240
+K ++ K + +I+++VV A +A RFS + + D + + G KRKH
Sbjct: 163 RK--RAPKTVEIALSIDKKVVNTAALSDAERFSEIPYIMEDASNANDSPRSSISGAKRKH 220
Query: 241 DVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
+ LE D + +A E V++RANFE F L+ K C D + L G + A +A+
Sbjct: 221 NALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEAFFEAS 279
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSI 357
+ NSV ++ I E + + E G +MTLDH+ L +L S DS+ +
Sbjct: 280 LME----RDNNSVTSPINGIMERLGQKEGGTSMTLDHITRVLEELN-CSPSSEDPDSFIL 334
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
D +I+E ++NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+ L
Sbjct: 335 DLSRIVEASRNEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQIVHGTL 394
Query: 418 YKLWKDGYLLMEKLVVTGARQSQFLLW 444
YKLWKD Y+ E+++ + +L+
Sbjct: 395 YKLWKDDYIDTERILSGTGTGTHNILY 421
>gi|302808123|ref|XP_002985756.1| hypothetical protein SELMODRAFT_424745 [Selaginella moellendorffii]
gi|300146665|gb|EFJ13334.1| hypothetical protein SELMODRAFT_424745 [Selaginella moellendorffii]
Length = 521
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 196/541 (36%), Positives = 299/541 (55%), Gaps = 39/541 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M Y K A +I + FGDLV VCECL+ +G L+ + +T L+ Q+ + LLVLIQ
Sbjct: 1 MAAGYAGKLACFLIKDQFGDLVHSVCECLISRGQLSLPEIGSFTLLARPQLASCLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEF-DQQCVELVQGLLEH 119
NCVQAF D +A +Y + D+I+ R F F+ ++ ++ + Q EL GLL+H
Sbjct: 61 HNCVQAFKVLDEDNLEARLRYTAIVDHIVLRACFPLFVELIREKTGNDQSEELALGLLQH 120
Query: 120 GRLTLKQMFDR-AKSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
GRLTL+Q+ R A+ S E D S E L+ VERCP E +L S+ G
Sbjct: 121 GRLTLEQLIKRDAECSNSE----DAQSQFMEAFTNLLQHKLVERCPRPEAVL-GFSDNAG 175
Query: 178 PAR--KKGSKSAKKIGEPETIEQQ---VVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV 232
R KK S+KK P E Q V+ AA PMEA RF + + +++ ++
Sbjct: 176 DGRPAKKARGSSKKRSLPLNFETQVRRVLAAAAPMEAERFRGPSRW---IMDEDAAASTP 232
Query: 233 TPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 292
+ GEKRKH L + DE+ V++R NFE ++ LRHK C HV A V+ A
Sbjct: 233 STGEKRKHGALW--DSSSMDEKEVLWRVNFEECVKLLRHKACACHVNFSFGSDAKTVVEA 290
Query: 293 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASS 352
ML+AT E VK S L+L+ I +++S + T VR +L ++ E F+++
Sbjct: 291 MLEATRKTETTVKAAFSDALTLNDIL--ILRS----DWTAPVVRNALKRMVEEGFINSVG 344
Query: 353 DS---YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
D+ Y++ +KI+E+A+ EVES+VS+R+G+ + RI RLLSK G E IS+ +
Sbjct: 345 DAGSHYTVAMQKIVELARKTEVESIVSQRFGKPSSRILRLLSKKGG-SEQKAISEKCLIP 403
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTGARQS---QFLLWKVNRQILWKHVLDEMFHAALNL 466
K+A ++LY+L K+ Y+ ++++ + ++ F LW V+ L VL++M+HAA NL
Sbjct: 404 DKEAWQLLYQLMKERYIELQEVPKSAGDRAPARTFYLWHVDFSKLSSVVLEDMYHAAYNL 463
Query: 467 SLRVSYELDREKELLNLPADKRTGPL----QDRYNRIRKVRILLESSQMKLDDAILLFHD 522
++ + L+ EKELL +P TG L Q + +R++ + +LE S KL + I+L+ D
Sbjct: 464 HRQIEHRLEHEKELLIIPT---TGSLSNEQQQKLDRLQSIVKILEVSIFKLMNTIMLY-D 519
Query: 523 F 523
F
Sbjct: 520 F 520
>gi|302785359|ref|XP_002974451.1| hypothetical protein SELMODRAFT_414649 [Selaginella moellendorffii]
gi|300158049|gb|EFJ24673.1| hypothetical protein SELMODRAFT_414649 [Selaginella moellendorffii]
Length = 504
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 177/494 (35%), Positives = 271/494 (54%), Gaps = 31/494 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M Y K A +I + FGDLV VCECL+ +G L+ + +T L+ + + LLVLIQ
Sbjct: 1 MAAGYAGKLACFLIKDQFGDLVHSVCECLISRGQLSLPEIGSFTLLARPHLASCLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEF-DQQCVELVQGLLEH 119
NCVQAF D +A +Y + D+++ R F FL ++ ++ + Q EL GLL+H
Sbjct: 61 HNCVQAFKVLDEDNLEARLRYTAIVDHVVLRACFPLFLELIREKTGNDQSEELALGLLQH 120
Query: 120 GRLTLKQMFDR-AKSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
GRLTL+Q+ R A+ S E D S E L+ VERCP E +L S+ G
Sbjct: 121 GRLTLEQLIKRDAECSNSE----DAQSQFMEAFTNLLQHKLVERCPRPEAVL-GFSDNAG 175
Query: 178 PAR--KKGSKSAKKIGEPETIEQQ---VVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV 232
R KK S+KK P E Q V+ AA PMEA RF + + +++ ++
Sbjct: 176 DGRPAKKARGSSKKRSLPLNFETQVRRVLAAAAPMEAERFRGPSRW---IMDEDAAASTP 232
Query: 233 TPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 292
+ EKRKH L + DE+ V++R NFE ++ LRHK C HV A V+ A
Sbjct: 233 STSEKRKHGALW--DSSSMDEKEVLWRVNFEECVKLLRHKACASHVNFSFGSDAKTVVEA 290
Query: 293 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASS 352
ML+AT E VK S L+L+ I +++S + T VR +L ++ E F+++
Sbjct: 291 MLEATRKTETTVKAAFSDALTLNDIL--ILRS----DWTAPVVRNALKRMVEEGFINSVG 344
Query: 353 DS---YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
D+ Y++ +KI+E+A+ EVES+VS+R+G+ + RI RLLSK G E IS+ +
Sbjct: 345 DAGSHYTVAMQKIVELARKTEVESIVSQRFGKPSSRILRLLSKKGG-SEQKAISEKCLIP 403
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTGARQS---QFLLWKVNRQILWKHVLDEMFHAALNL 466
K+A ++LY+L K+ Y+ ++++ + ++ F LW V+ L VL++M+HAA NL
Sbjct: 404 DKEAWQLLYQLMKERYIELQEVPKSAGDRAPARTFYLWHVDFSKLSSVVLEDMYHAAYNL 463
Query: 467 SLRVSYELDREKEL 480
++ + L+ EKE+
Sbjct: 464 HRQIEHRLEHEKEV 477
>gi|147817006|emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]
Length = 721
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/213 (63%), Positives = 167/213 (78%), Gaps = 5/213 (2%)
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD-EC 248
+ EP+TIEQ+ + AA PM+A RFSV+ N +DV +S NVT GEKRK D LELD E
Sbjct: 288 VEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDV----DDSPNVTAGEKRKQDALELDKET 343
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+AT S EKKVKT+N
Sbjct: 344 GASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTEN 403
Query: 309 SVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQN 368
SVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QLG V +++SYS+D + IIE+AQN
Sbjct: 404 SVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQN 463
Query: 369 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 401
+EVES+ KRYGRDAYRIFRLLSKS RLLETDK
Sbjct: 464 DEVESITLKRYGRDAYRIFRLLSKSCRLLETDK 496
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 119/195 (61%), Positives = 155/195 (79%), Gaps = 6/195 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG T +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTXTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDG----PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 116
NCVQAF +Q G P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GL
Sbjct: 61 HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120
Query: 117 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 176
L+HGRLTL+Q+ DRAKS+++E V D+LRE+ +KLV AH+VERCPASEP L P SEEE
Sbjct: 121 LQHGRLTLEQILDRAKSNQREP--VVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 178
Query: 177 GPARKKGSKSAKKIG 191
PARK+G+KSAK+ G
Sbjct: 179 TPARKRGAKSAKQWG 193
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 21/152 (13%)
Query: 393 SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME---------------------KL 431
SG +ISDTTFVEKKD KILY+LWKD YL M KL
Sbjct: 570 SGITFYIGEISDTTFVEKKDTAKILYQLWKDEYLQMGGNLFKXIEEDILAIYMIPSVLKL 629
Query: 432 VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGP 491
+ G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL++E+E++ LP +KR G
Sbjct: 630 NLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGA 689
Query: 492 LQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 690 LGNRFERLRKVRILLESSLMKLDDAIMLFNDF 721
>gi|302820283|ref|XP_002991809.1| hypothetical protein SELMODRAFT_430080 [Selaginella moellendorffii]
gi|300140347|gb|EFJ07071.1| hypothetical protein SELMODRAFT_430080 [Selaginella moellendorffii]
Length = 430
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 156/442 (35%), Positives = 255/442 (57%), Gaps = 44/442 (9%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A +I + FG+LV ++G L + R+T + + + L LIQ NCVQAF
Sbjct: 7 ACDLINDQFGELV--------QRGSLLLSEIARFTGIDVAPLGDCLKQLIQHNCVQAFRA 58
Query: 70 ---EQPDG--------PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 118
++ DG PK NT Y+++ DN+LHR+RF KF+T++ + + L+ LL+
Sbjct: 59 SVEQEHDGLGAGGRPAPKPNTFYMLILDNVLHRMRFPKFMTLVRDDIGSEAQGLLGALLQ 118
Query: 119 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
HGRLTL Q+ RA + G++ S+++ V+LV AH++ERCP EP L P++EEE P
Sbjct: 119 HGRLTLDQLLKRAAECAQPGDVEVEMSVKKAFVELVEAHFIERCPLPEPTL-PLAEEEQP 177
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
K+ +A +T E++V++AA +A+RF + +++ G+ +++ G KR
Sbjct: 178 -NKRARMTA------QTRERRVLDAAAQSDALRFRLPASLQLQSGDLVTLDDSLITGHKR 230
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
K E+D + D++ V++R N+E FIRRLRH+ C+ V + D G VL+ +L +
Sbjct: 231 K----EMDT-TLLDDKDVIWRVNYEEFIRRLRHQACVRLVSSKCDLGCGTVLACILDRSR 285
Query: 299 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV----DASSDS 354
AE+ V+ + S PL + +I E V K+E GR M L+ +R +L+Q+ FV +S+
Sbjct: 286 KAERSVRQRLSSPLEMEAIVEAVRKTEEGRCMPLERIRCALLQMTADGFVVDRAGEASEH 345
Query: 355 YSI-------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
++ D KI+++A+ E+E +V +R+GR RIFRLLS GR L+ +ISD +
Sbjct: 346 RALMPLGMFPDMRKILDVARQAEIEGIVLQRFGRKCCRIFRLLSTKGR-LDHKQISDKSL 404
Query: 408 VEKKDAPKILYKLWKDGYLLME 429
V K+A ++L KL K+ ++ +E
Sbjct: 405 VPSKEAWELLSKLVKEHFIELE 426
>gi|302822625|ref|XP_002992969.1| hypothetical protein SELMODRAFT_431118 [Selaginella moellendorffii]
gi|300139169|gb|EFJ05915.1| hypothetical protein SELMODRAFT_431118 [Selaginella moellendorffii]
Length = 430
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/442 (35%), Positives = 254/442 (57%), Gaps = 44/442 (9%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A +I + FG+LV ++G L + R+T + + + L LIQ NCVQAF
Sbjct: 7 ACDLINDQFGELV--------QRGSLLLSEIARFTGIDVAPLGDCLKQLIQHNCVQAFRA 58
Query: 70 ---EQPDG--------PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 118
++ DG PK NT Y+++ DN+LHR+RF KF+T++ + + L+ LL+
Sbjct: 59 SVEQEHDGLGAGGRPAPKPNTFYMLILDNVLHRMRFPKFMTLVRDDIGSEAQGLLGALLQ 118
Query: 119 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
HGRLTL Q+ RA + G++ S+++ V+LV AH++ERCP EP L P++EEE P
Sbjct: 119 HGRLTLDQLLKRAAECAQPGDVEVEMSVKKAFVELVEAHFIERCPLPEPTL-PLAEEEQP 177
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
K+ +A +T E++V++AA +A+RF + +++ + +++ G KR
Sbjct: 178 -NKRARMTA------QTRERRVLDAAAQSDALRFRLPASLQLQSEDLVTLDDSLITGHKR 230
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
K E+D + D++ V++R N+E FIRRLRH+ C+ V + D G VL+ +L +
Sbjct: 231 K----EMDT-TLLDDKDVIWRVNYEEFIRRLRHQACVRLVSSKCDLGCGTVLACILDRSR 285
Query: 299 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV----DASSDS 354
AE+ V+ + S PL + +I E V K+E GR M L+ +R +L+Q+ FV +S+
Sbjct: 286 KAERSVRQRLSSPLEMEAIVEAVRKTEEGRCMPLERIRCALLQMTADGFVVDRAGEASEH 345
Query: 355 YSI-------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
++ D KI+++A+ E+E +V +R+GR RIFRLLS GR L+ +ISD +
Sbjct: 346 RALMPLGMFPDMRKILDVARQAEMEGIVLQRFGRKCCRIFRLLSTKGR-LDHKQISDKSL 404
Query: 408 VEKKDAPKILYKLWKDGYLLME 429
V K+A ++L KL K+ ++ +E
Sbjct: 405 VPSKEAWELLSKLVKEHFIELE 426
>gi|56202141|dbj|BAD73474.1| RNA polymerase III subunit-like protein [Oryza sativa Japonica
Group]
Length = 359
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 206/376 (54%), Gaps = 25/376 (6%)
Query: 152 KLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMR 211
KLV AHYVERCP EP P+ +E+ + +K ++ K + +I+++VV A +A R
Sbjct: 5 KLVFAHYVERCPKPEPFFDPLVDEQSTSSRK--RAPKTVEIALSIDKKVVNTAALSDAER 62
Query: 212 FSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD---ECGVADEQSVVYRANFEGFIRR 268
FS + + D + + G KRKH+ LE D + +A E V++RANFE F
Sbjct: 63 FSEIPYIMEDASNANDSPRSSISGAKRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFC 121
Query: 269 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 328
L+ K C D + L G + A +A+ + NSV ++ I E + + E G
Sbjct: 122 LKKKFCADRKKPKLKVGTHPIWEAFFEASLME----RDNNSVTSPINGIMERLGQKEGGT 177
Query: 329 NMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 388
+MTLDH+ L +L S DS+ +D +I+E ++NEE+ES+V K+YG++A+ IFR
Sbjct: 178 SMTLDHITRVLEELN-CSPSSEDPDSFILDLSRIVEASRNEEIESLVRKKYGQEAFTIFR 236
Query: 389 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV-TGARQSQFLLWKVN 447
LL + +ETDKI DTT ++K+ LYKLWKD Y+ E+++ TG +Q+ +W+V
Sbjct: 237 LLVRERGPVETDKIIDTTILDKQIVHGTLYKLWKDDYIDTERILSGTGTGNTQYFVWRV- 295
Query: 448 RQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLE 507
+ + +D + HAALNL V+Y ELL L K L++R N +L
Sbjct: 296 KNTFREQFIDNLCHAALNLRQMVNY----IAELL-LEGSKDDTKLRNRKN-------ILI 343
Query: 508 SSQMKLDDAILLFHDF 523
+ + DD+++LF DF
Sbjct: 344 LALTRHDDSLMLFQDF 359
>gi|355389059|gb|AER62472.1| hypothetical protein [Eremopyrum triticeum]
Length = 307
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 169/313 (53%), Gaps = 13/313 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFD 64
Query: 171 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 230
P +E PAR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDESTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPR 121
Query: 231 NVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 288
N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 NAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHP 181
Query: 289 VLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV 348
+ + +A + K NSV SL+ I E++ + E G M++ ++ L +L
Sbjct: 182 IWESFFEANLTD----KDTNSVTSSLNGILEKLGQKEGGAAMSIGDIKPVL---QDLQCT 234
Query: 349 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 408
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT +
Sbjct: 235 TSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTIL 294
Query: 409 EKKDAPKILYKLW 421
+K+ LYKLW
Sbjct: 295 DKQIVHSTLYKLW 307
>gi|355389017|gb|AER62451.1| hypothetical protein [Hordeum vulgare subsp. spontaneum]
Length = 308
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 172/314 (54%), Gaps = 14/314 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 171 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ ARK+ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARKRAPKTAEEV---LSLEQKVVNTATLSDPERFSEIPYSMEDASKTNDRP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S+ I E++ + E G M++ ++ L +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVL---EDLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
++ + ++ D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSTGEEFTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAIETDQIIDTTI 294
Query: 408 VEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389043|gb|AER62464.1| hypothetical protein [Taeniatherum caput-medusae]
gi|355389045|gb|AER62465.1| hypothetical protein [Taeniatherum caput-medusae]
Length = 307
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 170/313 (54%), Gaps = 13/313 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRTNFNRLVYARYVERCPKAEPHFD 64
Query: 171 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 230
P +E PAR++ K+A+++ ++EQ+VV A + RFS + D + +
Sbjct: 65 PREDESTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPH 121
Query: 231 NVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 288
N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 NAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHP 181
Query: 289 VLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV 348
+ + +A K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 IWESFFEANLYD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQCT 234
Query: 349 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 408
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT +
Sbjct: 235 TSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTIL 294
Query: 409 EKKDAPKILYKLW 421
+K+ LYKLW
Sbjct: 295 DKQIVHSTLYKLW 307
>gi|355389067|gb|AER62476.1| hypothetical protein [Hordeum bogdanii]
Length = 308
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 172/314 (54%), Gaps = 14/314 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 171 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDYP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A+ + K NSV S I E++ + E G M++ +R L +L
Sbjct: 182 PIWESFFEASLTD----KDTNSVTSSRDGILEKLGQKEGGAAMSIGQIRPVL---EDLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
++ + ++ D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSTGEEFTFDLRKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGSAVETDQIIDTTI 294
Query: 408 VEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389051|gb|AER62468.1| hypothetical protein [Psathyrostachys juncea]
Length = 312
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 171/315 (54%), Gaps = 12/315 (3%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 171 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +EE AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKANDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-GELS 346
+ + +A + + NSV S+S I E++ + E MT+D ++ L L S
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMSGILEKLGQKEGCAAMTVDQIKIVLADLQCTTS 237
Query: 347 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
+ D+++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 TSNEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTT 297
Query: 407 FVEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 298 ILDKQIVHSTLYKLW 312
>gi|355389021|gb|AER62453.1| hypothetical protein [Secale cereale]
Length = 308
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 171/314 (54%), Gaps = 14/314 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPFFN 64
Query: 171 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVVGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGQIKPVLL---DLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+ + Y+ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEYNFDLSKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 408 VEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389063|gb|AER62474.1| hypothetical protein [Henrardia persica]
Length = 308
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 171/314 (54%), Gaps = 14/314 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV AHYVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYAHYVERCPKAEPHFD 64
Query: 171 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S++ I E++ + E G MT+ ++ L +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMTIGQIKPVL---EDLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 408 VEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389031|gb|AER62458.1| hypothetical protein [Pseudoroegneria tauri subsp. libanotica]
Length = 311
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 170/314 (54%), Gaps = 11/314 (3%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVHARYVERCPKAEPHFN 64
Query: 171 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR+K K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARRKVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 SNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + + NSV S++ I E++ + E MT+DHV+ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSINRILEKLGQKEGSAAMTVDHVKRVLGDLQCALT 237
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
++++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 NSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 297
Query: 408 VEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 298 LDKQIVHSTLYKLW 311
>gi|355389049|gb|AER62467.1| hypothetical protein [Psathyrostachys juncea]
Length = 312
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 170/315 (53%), Gaps = 12/315 (3%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 171 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +EE AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKANDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-GELS 346
+ + +A + + NSV S++ I E++ + E MT+D ++ L L S
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMNGILEKLGQKEGCAAMTVDQIKIVLADLQCTTS 237
Query: 347 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
D+++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 TSSEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTT 297
Query: 407 FVEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 298 ILDKQIVHSTLYKLW 312
>gi|355389041|gb|AER62463.1| hypothetical protein [Pseudoroegneria spicata]
Length = 311
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 170/314 (54%), Gaps = 11/314 (3%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + ++ +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIQMNFNRLVHARYVERCPKAEPHFN 64
Query: 171 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR+K K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARRKVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 SNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + + NSV S++ I E++ + E MT+DHV+ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSINRILEKLGQKEGSAAMTVDHVKRVLGDLQCTLT 237
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
++++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 NSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 297
Query: 408 VEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 298 LDKQIVHSTLYKLW 311
>gi|355389025|gb|AER62455.1| hypothetical protein [Aegilops tauschii]
gi|355389027|gb|AER62456.1| hypothetical protein [Aegilops tauschii]
Length = 308
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 169/314 (53%), Gaps = 14/314 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R KLV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNKLVYARYVERCPKAEPYFN 64
Query: 171 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYGMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEIDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S + I E++ + E MT+ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLL---DLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 408 VEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389023|gb|AER62454.1| hypothetical protein [Aegilops longissima]
Length = 308
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 169/314 (53%), Gaps = 14/314 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R KLV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNKLVYARYVERCPKAEPYFN 64
Query: 171 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYGMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHRAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S + I E++ + E MT+ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLL---DLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 408 VEKKDAPKILYKLW 421
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389019|gb|AER62452.1| hypothetical protein [Hordeum vulgare subsp. spontaneum]
Length = 302
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 14/304 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 171 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ ARK+ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARKRAPKTAEEV---LSLEQKVVNTATLSDPERFSEIPYSMEDASKTNDRP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S+ I E++ + E G M++ ++ L +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVL---EDLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
++ + ++ D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSTGEEFTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 408 VEKK 411
++K+
Sbjct: 295 LDKQ 298
>gi|355389047|gb|AER62466.1| hypothetical protein [Dasypyrum villosum]
Length = 303
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 166/304 (54%), Gaps = 14/304 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
LV+GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LVEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFN 64
Query: 171 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 408 VEKK 411
++K+
Sbjct: 295 LDKQ 298
>gi|355389033|gb|AER62459.1| hypothetical protein [Dasypyrum villosum]
Length = 301
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 163/304 (53%), Gaps = 14/304 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP EP
Sbjct: 5 LIEGLLQNGRLTXDQLVGRTISKVPEGXIRPAREEIRMNFNRLVYARYVERCPKXEPYFN 64
Query: 171 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQC 234
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+ + ++ D K++E EE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLRKMVEACXXEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 408 VEKK 411
++K+
Sbjct: 295 LDKQ 298
>gi|355389035|gb|AER62460.1| hypothetical protein [Psathyrostachys juncea]
Length = 292
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 158/295 (53%), Gaps = 12/295 (4%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 171 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +EE PAR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-GELS 346
+ + +A + + NSV S++ I E++ + E MT+D ++ L L S
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMNGILEKLGQKEGCAAMTVDQIKVVLADLQCTTS 237
Query: 347 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 401
D+++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+
Sbjct: 238 TSSEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQ 292
>gi|355389065|gb|AER62475.1| hypothetical protein [Triticum monococcum subsp. aegilopoides]
Length = 283
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 150/281 (53%), Gaps = 13/281 (4%)
Query: 144 DSLRETLVKLVTAHYVERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVE 202
+ +R KLV A YVERCP +EP P +E+ AR++ K+A+++ +++Q+VV
Sbjct: 13 EEIRMNFNKLVYARYVERCPKAEPYFNPQEDEQSTAARRRVPKTAEEVL---SLKQKVVN 69
Query: 203 AALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRA 260
A + RFS + D + +N G KRKH E+DE E V++R
Sbjct: 70 TATLSDPERFSEIPYGMEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRV 129
Query: 261 NFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEE 320
NFE FI L+ K C D + L G + + +A + K NSV S + I E+
Sbjct: 130 NFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEK 185
Query: 321 VIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYG 380
+ + E MT+ ++ L+ +L + + ++ D K++E +NEE+ES+V K+YG
Sbjct: 186 LGQKEGTAAMTIGDIKPVLL---DLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYG 242
Query: 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
++A+ IFRLL G +ETD+I DTT ++K+ LYKLW
Sbjct: 243 QEAFTIFRLLVTQGCAVETDQIIDTTILDKQIVHSTLYKLW 283
>gi|326523087|dbj|BAJ88584.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 23/293 (7%)
Query: 234 PGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 291
P RKH E+DE E V++R NFE FI L+ K C D + L G +
Sbjct: 6 PEVLRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWE 65
Query: 292 AMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDAS 351
+ +A + K NSV S+ I E++ + E G M++ ++ L +L ++
Sbjct: 66 SFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVL---EDLQCTTST 118
Query: 352 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 411
+ ++ D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 119 GEEFTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQ 178
Query: 412 DAPKILYKLWKDGYLLMEKLV-VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 470
LYKLW DGY+ EK+ G +QF +W+ + + +D ++HAALNL V
Sbjct: 179 IVHSTLYKLWNDGYIDTEKIASAAGTGYAQFFVWRA-KNTFREQFVDNLYHAALNLRQMV 237
Query: 471 SYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+Y ELL L K L++R N +L + + DD++LLF DF
Sbjct: 238 NY----IAELL-LEGSKDETKLRNRKN-------ILILALTRHDDSLLLFCDF 278
>gi|355389057|gb|AER62471.1| hypothetical protein [Eremopyrum bonaepartis]
Length = 263
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 147/273 (53%), Gaps = 13/273 (4%)
Query: 152 KLVTAHYVERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAM 210
+LV A YVERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A +
Sbjct: 1 RLVYARYVERCPKAEPHFDPREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPE 57
Query: 211 RFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRR 268
RFS + D + +N G KRKH E+DE E V++R NFE FI
Sbjct: 58 RFSEIPYSMEDASKTNDCPHNTVVGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFC 117
Query: 269 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 328
L+ K C D + L G + + +A + K N V S++ I E++ + E G
Sbjct: 118 LKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNCVTSSINGILEKLGQKEGGA 173
Query: 329 NMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 388
MT+ ++ L +L + + ++ D K++E +NEE+ES+V K+YG++A+ IFR
Sbjct: 174 AMTIGQIKPVL---EDLQCTTSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFR 230
Query: 389 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
LL G +ETD+I DTT ++K+ LYKLW
Sbjct: 231 LLVTQGCAVETDQIIDTTILDKQIVHSTLYKLW 263
>gi|355389053|gb|AER62469.1| hypothetical protein [Australopyrum retrofractum]
Length = 258
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 142/265 (53%), Gaps = 10/265 (3%)
Query: 160 ERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV 218
ERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 ERCPKAEPHFNPQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYS 57
Query: 219 ESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCID 276
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 MEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCAD 117
Query: 277 HVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR 336
+ L G + + +A + K NSV S + I E++ + E MT+DH++
Sbjct: 118 RKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTVDHMK 173
Query: 337 ASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 396
L L + ++++ D K++E +NEE+ES+V K+YG++A+ IFRLL G
Sbjct: 174 KVLEDLQCSTTSSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCA 233
Query: 397 LETDKISDTTFVEKKDAPKILYKLW 421
+ETD+I DTT ++K+ LYKLW
Sbjct: 234 VETDQIIDTTILDKQIVHSTLYKLW 258
>gi|159475425|ref|XP_001695819.1| hypothetical protein CHLREDRAFT_174488 [Chlamydomonas reinhardtii]
gi|158275379|gb|EDP01156.1| predicted protein [Chlamydomonas reinhardtii]
Length = 535
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 148/580 (25%), Positives = 247/580 (42%), Gaps = 110/580 (18%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
+Y A ++ + +GD V KV + L+ KG L ++ R T ++ VK ALL+LIQQNC
Sbjct: 6 QYACDLACRLVQDQYGDAVGKVFKLLVSKGQLQLGDIVRGTSMNPNIVKQALLILIQQNC 65
Query: 64 VQAFTTEQPD-----GPKANTQ-YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
+ ++ QP GP+ + Y D +L +R + L ++
Sbjct: 66 INSYL--QPGEETLRGPRPSFYLYEANTDRVLQIIRMDQVLGSVA--------------- 108
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISE 174
RL K+ +KE DS+ T + LV AHYVER P P +P +
Sbjct: 109 --ARL--------GKALDKETR----DSISNTFISLVQAHYVERSP---PCSLPPPAVRP 151
Query: 175 EEGPARKKGSKSAKKIGEPETIEQQVVEAA---LPMEAMRFSVVTNVE-----SDVGEKE 226
R + +KSA E +Q + L E RF V + SD G++
Sbjct: 152 HPNSVRTRKAKSAASNTEGYAADQAAALKSFEELSFEKQRFKVPAELALEMFMSDEGDER 211
Query: 227 KNSNNV--------------------------------TPGEKRKHDVLELDECGVADEQ 254
S + P + + + A
Sbjct: 212 AASPDAKMEDADGAGESAGGSGAGGSGAGGGRGRKKRAAPDDDDELAIKITAPAKKAKPA 271
Query: 255 SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSL 314
V++R N + F RR RH+ + VR D+ AA V+SAML A E VK S+ LS+
Sbjct: 272 VVLWRVNNDEFNRRFRHQAIVGLVREKFDEDAAGVVSAMLAAGRPFESSVKLPPSLGLSV 331
Query: 315 SSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESV 374
E R++ L AS S S SY ++ +++I++ ++ E+V
Sbjct: 332 PLCEE--------RSVQLSEDEAS-------SPAWRGSASYVVNSQRVIDLIMLKQTEAV 376
Query: 375 VSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVT 434
V R+ R+FRLL+ G+ LE +I+D + KD ++LY + + G+++++ + T
Sbjct: 377 VKARFDVAGLRVFRLLALRGQ-LEQKQIADLAMLPAKDTRELLYLMLQGGFVMLQDIPKT 435
Query: 435 GARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKR---- 488
R F W+VN L +++ +A + R+ +E ++EK+L+ L +
Sbjct: 436 ADRAPSRTFYTWRVNMTSLSDSTAAQLYRSAGRVWQRLQFETEKEKDLVALIESAKETRT 495
Query: 489 -----TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
T + R+++V ++E+S LD I +F+DF
Sbjct: 496 VNFNLTTAQRQAVARLKRVNEVMETSLAHLDQMIAVFNDF 535
>gi|355389055|gb|AER62470.1| hypothetical protein [Australopyrum retrofractum]
Length = 257
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 141/264 (53%), Gaps = 10/264 (3%)
Query: 161 RCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE 219
RCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPHFNPQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSM 57
Query: 220 SDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDH 277
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 EDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADR 117
Query: 278 VRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRA 337
+ L G + + +A + K NSV S + I E++ + E MT+DH++
Sbjct: 118 KKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTVDHMKK 173
Query: 338 SLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 397
L L + ++++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +
Sbjct: 174 VLEDLQCSTTSSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAV 233
Query: 398 ETDKISDTTFVEKKDAPKILYKLW 421
ETD+I DTT ++K+ LYKLW
Sbjct: 234 ETDQIIDTTILDKQIVHSTLYKLW 257
>gi|355389061|gb|AER62473.1| hypothetical protein [Henrardia persica]
Length = 255
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 142/265 (53%), Gaps = 13/265 (4%)
Query: 160 ERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV 218
ERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 ERCPKAEPHFDPREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPERFSEIPYS 57
Query: 219 ESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCID 276
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 MEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFCLKKKFCAD 117
Query: 277 HVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR 336
+ L G + + +A + K NSV S++ I E++ + E G MT+ ++
Sbjct: 118 RKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMTIGQIK 173
Query: 337 ASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 396
L +L + + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G
Sbjct: 174 PVL---EDLQCTTSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCA 230
Query: 397 LETDKISDTTFVEKKDAPKILYKLW 421
+ETD+I DTT ++K+ LYKLW
Sbjct: 231 VETDQIIDTTILDKQIVHSTLYKLW 255
>gi|384247960|gb|EIE21445.1| hypothetical protein COCSUDRAFT_43175 [Coccomyxa subellipsoidea
C-169]
Length = 558
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 137/556 (24%), Positives = 239/556 (42%), Gaps = 61/556 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I FGD V +VC L +G T V R + L V++ALLVL+Q N V + +
Sbjct: 15 LIKEFFGDTVERVCNVLTARGQQTLPEVVRASGLPPSAVRSALLVLLQHNFVISELVQPD 74
Query: 73 DGPKANTQYVVLF----DNILHRVRFAKFLTILSQEF-----DQQCVELVQGLLEHGRLT 123
G +A L+ I+ +R + L + +E+ V++++ LL HGRL
Sbjct: 75 TGLRAPQAPYFLYHADTGAIIQILRRPRILQHVQREYGGPGESDMAVKIIEVLLAHGRLR 134
Query: 124 LKQMFD--RAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 181
L Q+ A+ EG + L + LV ++ER P P MP+ + +
Sbjct: 135 LDQVAAAVAARMERPEGEV--RGDLHARFISLVNGRHIERVP---PADMPLRKPVAFTKA 189
Query: 182 KGSKSAKKIGEPETIEQ------QVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 235
+ ++A K G PE Q Q+ + + E R D + S G
Sbjct: 190 QAKRAAPKPGTPEAAVQEAEAVRQLAQDSYSAERFRLPRDLTGAPDTTRDPRLSKQAGRG 249
Query: 236 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 295
++++ D + A ++R NFE F RLR + C ++V A +++A+L
Sbjct: 250 KRKRDDADAASQRSDAASAQELWRVNFEEFNCRLRDEACAEYVAVIYGREAGALVAALLT 309
Query: 296 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNM----TLDHVRASLVQLGELSFVDAS 351
+ + + ++S + + R+ L A+ V LGEL+ DA
Sbjct: 310 CAARQPGGSRLDSGASAAVSVLAAAAALPQMRRSRPDLPVLTGAAAARV-LGELT-EDAR 367
Query: 352 S------------DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLET 399
S +++ +D I + + +E++V +R+ R+FRLL + + LE
Sbjct: 368 SGVTRSGSSGVANEAFIVDTGAITRAIRQQHIEALVRERFPPIGMRVFRLLC-AKKQLEQ 426
Query: 400 DKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLD 457
+++D V +DA ++LY++ + G+L ++ + T + F W+V+ + + V +
Sbjct: 427 KQVADYAMVPVRDARELLYRMLRAGFLTLQDVPRTADHSASRTFYTWRVDSTAVTRRVGE 486
Query: 458 EMFHAALNLSLRVSYELDREKELLNL------------PADKRTGPLQDRYNRIRKVRIL 505
E+ AA NL R+ +EL E + P DK R+ +V L
Sbjct: 487 ELLQAAGNLRARLHHELSEHAEAPKVLKRVEAGDTALQPHDK------AEVERVCRVSAL 540
Query: 506 LESSQMKLDDAILLFH 521
LE+ + LD I LFH
Sbjct: 541 LETRLIALDPLIALFH 556
>gi|41053897|ref|NP_956526.1| DNA-directed RNA polymerase III subunit RPC3 [Danio rerio]
gi|54039272|sp|Q7ZUX1.1|RPC3_DANRE RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|28278013|gb|AAH46092.1| Polymerase (RNA) III (DNA directed) polypeptide C [Danio rerio]
Length = 539
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/480 (24%), Positives = 213/480 (44%), Gaps = 36/480 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CVQAFTTEQ 71
++ HFGD+V V L+R G LT + + T+L+ + VK +L VL+Q C
Sbjct: 12 LLQEHFGDVVENVGTHLIRNGVLTLRALAHETKLALDLVKKSLCVLVQHGMCTFGPGRRG 71
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQM 127
P GP +Y + ++ILH +R+ +++ + +V+ +L+ G++T+ K +
Sbjct: 72 PAGP---VEYHINCEHILHMLRYPRYIYTAKSLYGDTGELIVEEILQRGQMTMSSTVKTV 128
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 187
DR + EG +D + + +LV H+++RCP M +E G +++
Sbjct: 129 ADRLTHNMPEGQSMDYNEVVSAFSRLVETHFLQRCPP-----MASAESSGTG---SAETP 180
Query: 188 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE 247
+ +P E LP ++ S+ GE ++ + +K K D E
Sbjct: 181 PAVTQPSNPESHPDCYKLPYISLSGHGKRRRSSEDGEADQRA-----AKKAKTDS---SE 232
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
CG ++ + ++ NFE F R + I V LD + ++ ML+ S
Sbjct: 233 CG---DEGIHWQVNFERFHLHFRDQAIISAVSCKLDQTSGEIVRTMLR-MSEVTTSANAA 288
Query: 308 NSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YSIDFEKII 363
+ LS + I+ + + LD LV + FV + DS + ++ + +
Sbjct: 289 FTQALSANEIFRALPSNYNIARPILDQYLTLLVD-DPMEFVGKAGDSGGGMFVVNLHRAL 347
Query: 364 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 423
+ESVV +R+G + RIFRLL + R LE ++ D + K+A ++LY L +
Sbjct: 348 ANLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKEMLYTLLSE 406
Query: 424 GYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ ++++ T A F L+ VN+ + +L + NL R YE K LL
Sbjct: 407 NLVQLQEIPKTPDHAPSRTFYLYAVNQLPTARLLLQHCYKTVGNLIERRLYETKENKRLL 466
>gi|307104061|gb|EFN52317.1| hypothetical protein CHLNCDRAFT_139103 [Chlorella variabilis]
Length = 589
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 138/568 (24%), Positives = 248/568 (43%), Gaps = 73/568 (12%)
Query: 20 DLVAKVCE----CLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPD-- 73
+++ VCE CL+ G + + + L Q+ +A+LVLIQ N V + E+P
Sbjct: 29 EILGPVCEQAIACLINHGMQQYGELLKTSGLPAGQLSSAVLVLIQHNYVNCYLKEEPPTL 88
Query: 74 -GPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
GP + T Y IL +R +F+T +S E Q+ V LV+ L EHGRL Q+ +
Sbjct: 89 RGPGPSYTLYEAALPRILQSLRVPRFMTHISDEHGQESVRLVRNLTEHGRLRWDQLLEAV 148
Query: 132 --KSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPISEEEGP-ARKKGSKSA 187
+S+E+ G L LV Y+ER P L P + P ARKK +
Sbjct: 149 VRESAEEGGEAAPAPGVLLNQFRSLVMQRYIERVPPCT--LPPPPQHVHPNARKKKAPPK 206
Query: 188 KKIGEPETIEQQVVEAAL--PMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV--- 242
E + ++ +AAL + +RF + + + S G+ + P KRK
Sbjct: 207 PGSEEEADMHREQADAALRHDYQQVRFRLPSELMSPSGDAVEVDAQAKPAGKRKRGGKDA 266
Query: 243 ------------LELDECGVA-------------------DEQSVVYRANFEGFIRRLRH 271
E + G A +E V++R N++ F RR R+
Sbjct: 267 AAASSEAEPAKKRERKKAGEAGAEGGSAASLPAQAAAAGDEEAPVLWRVNYDEFNRRFRN 326
Query: 272 KGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMT 331
+ + A + +L A + E+ + +V LS+ + + + + +
Sbjct: 327 DVIVSTAKLKYGVHAGQAVEGLLVANACFEQTAHCEETVVLSVGDVSGALRRIHSNEDPP 386
Query: 332 LDHVRASLVQLGE--LSFVDA-----SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAY 384
D++ L L + + F+++ + Y + +++ A+ +++ V+ ++G
Sbjct: 387 -DNLACVLSDLADDDMHFLESRGSGPGGEQYVLSISRVLRFARLYQLKGVIRTKFGVAGM 445
Query: 385 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FL 442
RI+RLL +G+ LE +++D V K++A + LY + K GYL ++ + T R F
Sbjct: 446 RIWRLLLLNGQ-LEQKQVADLAMVTKEEAREALYAMLKGGYLALQDVPRTNDRAPSRTFY 504
Query: 443 LWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK---ELLNLPA-----DKRTGPLQD 494
W+ N + +++ AA NL R+ +E ++ ELL LP ++R G +
Sbjct: 505 TWRANADTTIARLTSDLYRAAGNLHARLEHEARKQSELWELLELPVAPSIIERRQGEIAA 564
Query: 495 RYNRIRKVRILLESSQMKLDDAILLFHD 522
++ V LE++ + LD + +F D
Sbjct: 565 ----LKAVTSRLEAALLDLDWQVCIFAD 588
>gi|432102040|gb|ELK29859.1| DNA-directed RNA polymerase III subunit RPC3 [Myotis davidii]
Length = 861
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 215/486 (44%), Gaps = 53/486 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V +
Sbjct: 212 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSPDQVKKALCVLIQHNLVTYQVHK-- 269
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 270 ---RGTVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSALVKRVA 326
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP P +E P
Sbjct: 327 DRLTETMEDGKTMDYAEVSSTFVRLADTHFVQRCPLVSP-----TENSEP---------- 371
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR----KHDVLE 244
G P+ V+ + S++ G++ ++S + GE + KH
Sbjct: 372 --GPPQPAPTLVINENDMYLVPKLSLIGK-----GKRRRSSEDDATGEPKAKRLKHST-- 422
Query: 245 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 304
D + + ++AN + F + R + + V +D ++ ++ ML+ + ++
Sbjct: 423 -DNKEPLPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EI 476
Query: 305 KTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSI 357
T + P + E+ +S G N++ + L L + L FV S DS Y I
Sbjct: 477 TTPSGAPFTQPLSSNEIFRSLPTGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVI 536
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
+ K++ +ESVV +R+G RIFRL+ + + LE ++ D + K+A +L
Sbjct: 537 NLHKVLGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDML 595
Query: 418 YKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
YK+ + ++L++++ T A F L+ VN + +L + + NL R +E
Sbjct: 596 YKMLSENFILLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLIERRQFETK 655
Query: 476 REKELL 481
K LL
Sbjct: 656 ENKRLL 661
>gi|84370055|ref|NP_001033600.1| DNA-directed RNA polymerase III subunit RPC3 [Bos taurus]
gi|124021674|sp|Q2TBL4.1|RPC3_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|83638574|gb|AAI09973.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Bos
taurus]
Length = 533
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/494 (24%), Positives = 218/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + +Y + +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLVTYQVHK-----RGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPATEN-- 168
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
G P VV + S++ G++ ++S+ GE
Sbjct: 169 ----------SDTGPPPPAPTLVVSEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ +V T + P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 329 SGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|350583445|ref|XP_003125853.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 1 [Sus scrofa]
Length = 514
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+L H+V+RCP L+P +E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----LVPATENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + P + + +P + S++ G++ ++S+ GE
Sbjct: 171 PGPLPPA--------PNLVINEKDMYLVP----KLSLIGK-----GKRRRSSDEDATGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKHATDNKEPSPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 329 SGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + + NL
Sbjct: 388 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHKCYKSVANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|255071113|ref|XP_002507638.1| predicted protein [Micromonas sp. RCC299]
gi|226522913|gb|ACO68896.1| predicted protein [Micromonas sp. RCC299]
Length = 493
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 132/537 (24%), Positives = 235/537 (43%), Gaps = 76/537 (14%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
+Y A ++T FG K+C +L G T + + T LS + + ALL+L Q N
Sbjct: 9 QYEISLACGIVTESFGKDPGKICRAMLYHGSRTLRETVQETGLSPSRSQRALLILAQHNV 68
Query: 64 VQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 123
V + + QY IL R+R+ ++L + + L++ LLE+GRL
Sbjct: 69 VLVIPESRDED---ECQYYTKLGVILERLRYPQYLLFAQEHYRGSHNLLIECLLENGRLD 125
Query: 124 LKQMFDRAKSSEKEGNLVDL-----DSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
Q+ +S+ E + + L S R+ L +L + S PL + E G
Sbjct: 126 EHQLMA-GIASKTESDRIGLKRAIVSSSRQALAQLAEDQLI----ISVPLFI---ESNGT 177
Query: 179 ARK----KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 234
+R +G S + P +++ +A E D+ E ++N+
Sbjct: 178 SRSNFVTRGQTSVSQNSVPSQTVKKIDDAG-----------RKTEDDIKEGKQNN----- 221
Query: 235 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
++ N + F RLR C R + + A ++L L
Sbjct: 222 ----------------------LWLINCDEFTFRLRRDACAAVFREKVGEPARHLL---L 256
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 354
+ + N + S++ + +G TL +++ S Q S ++ +
Sbjct: 257 EEVEFNNEAFLLSNKIDTPRKSVHGSSFRDYSGLVQTLPNLKYSTCQ----SCINNNEAH 312
Query: 355 Y-SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+ +I + ++ + +++E+E+VV +R+G A RIFRLL R LE +I++ + KD
Sbjct: 313 FHNIKLKHVMSLVRSKEIEAVVRERFGGPACRIFRLLLMK-RNLEQKQIAEMAMIPVKDT 371
Query: 414 PKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++LYKL K Y+ ++++ T A F LW+V+ + + V E+ HA N+ R+
Sbjct: 372 RELLYKLLKAKYVQIQEVARTSDHAPSRTFYLWRVDLPYVEEQVGREIHHATFNVRARLM 431
Query: 472 YELDREKE-LLNLPADKRTG--PL----QDRYNRIRKVRILLESSQMKLDDAILLFH 521
+E+ RE+E LL L + T PL +D R++ V LE S M+L++ L F+
Sbjct: 432 FEMSREQETLLLLGKAQHTNDFPLTMKQRDSLIRMKTVAARLECSMMRLNELGLFFN 488
>gi|296489517|tpg|DAA31630.1| TPA: DNA-directed RNA polymerase III subunit RPC3 [Bos taurus]
gi|440903799|gb|ELR54406.1| DNA-directed RNA polymerase III subunit RPC3 [Bos grunniens mutus]
Length = 533
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 119/494 (24%), Positives = 219/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y + +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPATEN-- 168
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
G P VV + S++ G++ ++S+ GE
Sbjct: 169 ----------SDTGPPPPAPTLVVSEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ +V T + P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 329 SGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|426216419|ref|XP_004002460.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Ovis
aries]
Length = 534
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 118/494 (23%), Positives = 219/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y + +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPATEN-- 168
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
G P V+ + S++ G++ ++S+ GE
Sbjct: 169 ----------SDTGPPPPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKQSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ +V T + P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 329 SGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|432908643|ref|XP_004077962.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Oryzias latipes]
Length = 543
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 209/493 (42%), Gaps = 59/493 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V KV LL+ G + + T LS + VK +L VL+Q +
Sbjct: 12 LLQEHFGEVVEKVGRNLLKSGTQNLRAIVHETGLSVDLVKKSLCVLVQHGACSFIQGRK- 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
GP + T+Y D +L +R+ +++ + +++ LL+ G +T+ K +
Sbjct: 71 -GPGSPTEYKAHCDRVLRILRYPRYIYTAKTLYGDTGELIIEELLQRGHMTMSNTVKTVA 129
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR S EG+ +D + T KLV H+++RCP PA G+ +
Sbjct: 130 DRLTQSMDEGSSMDYGEVSATFSKLVETHFLQRCP--------------PAAGAGTTGSS 175
Query: 189 KIGEPETIEQQVVEAALP---MEAMRFSVVT-------NVESDVGEKEKNSNNVTPGEKR 238
+ + A P + R VT ++ S+ GE ++N+
Sbjct: 176 QTANSTSAAPASSTAPTPESFPDCYRVPQVTLIGRSKRSLASEEGEDQRNAKKA------ 229
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ--- 295
++D DE + ++ NFE F + R + I V LD ++ ++ ML+
Sbjct: 230 -----KMDPETHGDE-GIYWQVNFERFHQHFRDQTIISAVANKLDQTSSEIVRTMLRMSE 283
Query: 296 -ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 354
TSS K PLS + I+ + + LD LV + FV + +S
Sbjct: 284 VTTSSTAPCTK-----PLSANEIFRSLPATYNIPRHILDQYLTLLVD-DPMEFVGKAGES 337
Query: 355 ----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 410
Y ++ + + +ES+V +R+G + RIFRLL + R LE ++ D +
Sbjct: 338 GGGMYIVNLNQALANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPA 396
Query: 411 KDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSL 468
K+A +LY L + ++++ T A F L+ VN+ + +L + NL
Sbjct: 397 KEAKDMLYTLLSQNLVQLQEIPKTPDFAPSRTFYLYTVNQLPTARLLLQNCYKTVANLME 456
Query: 469 RVSYELDREKELL 481
R +E K LL
Sbjct: 457 RRLFEAKESKRLL 469
>gi|409082490|gb|EKM82848.1| hypothetical protein AGABI1DRAFT_68847 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 541
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 120/481 (24%), Positives = 220/481 (45%), Gaps = 47/481 (9%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
VHV HFG L A+V LL +G L+ + RYT+L + ++L L+Q N + + +
Sbjct: 14 VHV---HFGSLAAQVVSVLLTRGRLSLPQILRYTQLKPRIARASILALVQHNLL--WHAQ 68
Query: 71 QPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 130
+G + + D L R+RF KF+ + Q F + ELVQ +L+HG+L +
Sbjct: 69 SDEGTEV---FEFNVDECLMRLRFGKFVHMAQQLFGKAGAELVQSILDHGKLRSPDILRL 125
Query: 131 AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKI 190
+ + V R + KLV+ +Y++ P++ +L +S + + +G + AK
Sbjct: 126 LGVHDSKSITVH----RGVMHKLVSENYLK--PST--VLSHVSPADKQIKYEGEEKAKIS 177
Query: 191 GEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNN-VTPGEKRKHDVLELDECG 249
G P E ++ A + R G K K +N+ V KRK L+E
Sbjct: 178 GFPTAKE---LKQAKQVAEARMRREEEEAGKAGLKPKATNHAVHRARKRK-----LEETD 229
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 309
+ ++ +R NF+ F +R+ + R ++ AA+VL A+L T S ++ V S
Sbjct: 230 EIVDNTIYFRVNFDKFNIHIRNTLIVRAARNRYNEEAASVLRAILHLTESWQRNVAEVRS 289
Query: 310 VPLSLSSIYEE-----------VIKSEAGRNMTLDHVRASLVQLGE--------LSFVDA 350
P+S+ ++ + V+ + N T ++ G+ SF+
Sbjct: 290 EPVSVPNLVVKLANEDNLARGLVLAVKKPSNTTCIKEYLGMLSCGDNPTAVGKAASFISL 349
Query: 351 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 410
+S ++F+ I + +ESV +R+G + RI RLL +G+ ++ +IS +
Sbjct: 350 NSSKVQVEFDVIGRRLRRHVLESVTRERHGNEGVRILRLLMDTGK-MDDKQISKVVMMAG 408
Query: 411 KDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSL 468
KD +L L D + +++ + R F LW V++ + +L +++ + N+S+
Sbjct: 409 KDVRALLTALATDSLISTQEVPKSADRNPTRTFYLWYVDQHKAFSTILGQVYKSLYNISV 468
Query: 469 R 469
R
Sbjct: 469 R 469
>gi|336367824|gb|EGN96168.1| hypothetical protein SERLA73DRAFT_94223 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380559|gb|EGO21712.1| hypothetical protein SERLADRAFT_474473 [Serpula lacrymans var.
lacrymans S7.9]
Length = 542
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 134/487 (27%), Positives = 223/487 (45%), Gaps = 56/487 (11%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-QAFTT 69
V +I +HFG L A V LL +G L + RYT L V+ A+L+L+QQN + A +
Sbjct: 11 VQIIHSHFGPLTASVASALLTRGRLPLLQLVRYTSLKPRTVRAAVLILVQQNILWHAHSE 70
Query: 70 EQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----TLK 125
E+ + + NT+ L R+RF +F+ Q F + E+VQ +L+HG+L +
Sbjct: 71 EEGEVLEVNTK------ECLMRLRFGRFVWQAEQVFGKAAAEIVQLILDHGKLRPVDIVA 124
Query: 126 QM--FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKG 183
Q+ +D SS + L KLVTA Y++ P++ +L S + R +G
Sbjct: 125 QLSIYDPKSSS----------MYSQALHKLVTASYLK--PST--ILSHNSPRDKRIRYEG 170
Query: 184 SKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVL 243
+ AK G P E + A A R +G K K + ++ V
Sbjct: 171 EEKAKISGFPTAKE---LREAKETAAARLKREEEEAEKIGLKRKPKEQSSNRSNKRKAVD 227
Query: 244 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 303
E E V DE V +R NF+ F +R+K V+ + AA V+ A L+AT + +
Sbjct: 228 E--EVFVDDE--VYFRVNFDKFNIHIRNKIIELAVKERFNSSAALVMRAALKATEAKQVS 283
Query: 304 VKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR----ASLVQ--LGELS----------- 346
+ S P S++ I V ++ + + + ASLV+ LG LS
Sbjct: 284 SASVRSDPTSIAGISMHVDDADDLASGLVTSSKKAPVASLVKNYLGLLSSADNPTPSGQA 343
Query: 347 --FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISD 404
FV S + ++F+ + + + +E+V +R+G D RI RLL +G++ E ++S
Sbjct: 344 AAFVSLSDNKVHVEFDVVNKRLRRRVLEAVTRERHGDDGVRILRLLLDTGKMDEK-QVSK 402
Query: 405 TTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHA 462
+ KDA +L L D + ++++ + R F LW V+ + +L ++
Sbjct: 403 VAMMANKDARPLLSALSTDSLISIQEVPKSADRNPTRTFYLWFVDLPKAYSVLLGSLYKT 462
Query: 463 ALNLSLR 469
N+S+R
Sbjct: 463 LYNISMR 469
>gi|291398107|ref|XP_002715432.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide C (62kD)
[Oryctolagus cuniculus]
Length = 534
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 114/483 (23%), Positives = 219/483 (45%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V + +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIVHDTGTSPDQVKKALCVLIQHNLV-IYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y ++L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSHMLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP ++P +E+ S S
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----VVPATED--------SDSGP 173
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
P + + +P + +++ G++ ++S+ GE K K D
Sbjct: 174 PPPAPTLVINEKDMYVVP----KLNLIGK-----GKRRRSSDEDAAGEPKAKRPKQSTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTP 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|290991727|ref|XP_002678486.1| predicted protein [Naegleria gruberi]
gi|284092099|gb|EFC45742.1| predicted protein [Naegleria gruberi]
Length = 597
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/461 (22%), Positives = 228/461 (49%), Gaps = 25/461 (5%)
Query: 81 YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNL 140
Y V+ +NI+ R++ AK L + + EL+ LL+HGRLT+K++ +A + + +
Sbjct: 144 YQVIIENIIMRLKSAKLLYTIRTSYGIDAEELLHILLQHGRLTMKELIQKALENITQTDY 203
Query: 141 VDLDSLRET-----LVKLVTAHYVERCPASEPLLMPI--SEEEGPARKKGSKSAKKIGEP 193
++T K+V +++R +P + I E++ A++ GS S + +
Sbjct: 204 TFATESKKTSFITAFQKMVKDRFIKRV---QPYVSSIQLQEQKKNAKEGGSNSTTDLLQK 260
Query: 194 ETIEQQVVEAALPMEAMRFSV-----VTNVESDVGEKEKNSNNVTPGE--KRKHDVLELD 246
+ + + + R ++ + E + +K+ S+ ++P E + D ++ D
Sbjct: 261 YSKQNKESKKKSDKSKKRKTIEDEDGSSQYEPEKKKKKGTSSEISPLEFDTEEFDSIDED 320
Query: 247 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKT 306
E + D +++++ N+ FIR R++ I +V + + A+++ A T+ ++
Sbjct: 321 EIHI-DAENILWTTNYSQFIRTFRNESIIKYVETKMGEQFASIVKAAFDETAPYQRSKND 379
Query: 307 KNSVPLSLSSIYEEVIKSEA-GRNMTLDHVRASLVQLGELSFVDA-SSDSYSIDFEKIIE 364
S PL +Y+ + ++E GR + +++ S + EL + A D+Y I+ + + +
Sbjct: 380 PMSTPLKFEKLYDRISETEEIGRKVLENNL--SFLCNPELDILRAMGKDTYFINLKGVAD 437
Query: 365 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 424
+ +E E ++S++Y R+FRLL + + LE I++ + +A +L + +
Sbjct: 438 KLKKQETEVIISQKYSVIGCRLFRLLLEK-KYLEQTHIAECALLPPCEARTLLMNMLRGS 496
Query: 425 YLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 482
L ++++ + R +Q F LW V + +++ ++D+M+ + NL +R+ E E
Sbjct: 497 ILHLQEVPKSKDRSAQQTFFLWSVKLEQVYEKIIDDMYKSVRNLRIRLKKEQQHIIESGI 556
Query: 483 LPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
L + + +++ R++ + LE+S +KL D I LF DF
Sbjct: 557 LESTYLSEEQEEQIRRLKNIEDRLEASLIKLVDLITLFEDF 597
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CV 64
AV ++ + FGD++ KV LL +GP T ++ + T L QV+NALLVLIQ N CV
Sbjct: 7 AVEILNDQFGDIIGKVGSVLLEQGPQTMTDLIQNTSLQFPQVRNALLVLIQHNMCV 62
>gi|170111356|ref|XP_001886882.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638240|gb|EDR02519.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 539
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 123/496 (24%), Positives = 219/496 (44%), Gaps = 56/496 (11%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M + + V +I ++FG L AK+ LL +G L + R+T L V+ +LVL+Q
Sbjct: 1 MADSHTARLCVEIIHSNFGPLTAKIASVLLVRGRLPLPQLTRFTALRPRTVRACILVLVQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
N + +++ + + V D L R+RF KF+ + F + E+VQ +L+HG
Sbjct: 61 HNIIWHVLSDEGE------MFEVNIDECLMRLRFGKFIYKSEELFGKPAAEVVQVILDHG 114
Query: 121 RLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS-----EPLLMPISEE 175
+L + + + +G + + + + KLV+ HY++ P++ P I E
Sbjct: 115 KLKMPDIMALLGIYDGKG----IIAYTQAIHKLVSGHYLK--PSTTLSHISPCDKRIQYE 168
Query: 176 EGPARK-KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 234
RK G +AK++ + ++V EA L E +G K K +
Sbjct: 169 AEEKRKISGFPTAKELRQA----KEVAEARLKRE-------EEEAEKIGLKRKAKDQSGR 217
Query: 235 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
KRK E + + +V +R N+E F LR+ + V+ + AA V+ A +
Sbjct: 218 SAKRK-----ASESEESVDDAVYFRVNYERFNVHLRNGLIVAAVKERFNHQAALVIRAAM 272
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSE-AGRNMTLDHVRASLVQ-----LG----- 343
+ T ++ V S P+S+++I ++ + E G+ + + S LG
Sbjct: 273 KVTEQSQLSVSEVRSEPISVANIMTQLPEDEDLGKGLAHSSKKTSNATCIKDYLGMLSSA 332
Query: 344 --------ELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGR 395
E SFV + ++FE + + VESV +++G + RI RLLS +G+
Sbjct: 333 DNPTAAGRESSFVSFGTSKVQVEFEVVGRRLRRRLVESVAREKHGVEGVRILRLLSDTGK 392
Query: 396 LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWK 453
+ E +IS + KD +L L D + +++ + R F LW V+
Sbjct: 393 MDE-KQISKIVMMAPKDVRPLLAALASDSLISTQEVPKSADRNPTRTFYLWYVDHNKAHL 451
Query: 454 HVLDEMFHAALNLSLR 469
+L +F N+S+R
Sbjct: 452 AILGNVFKTLYNISMR 467
>gi|47207522|emb|CAG14088.1| unnamed protein product [Tetraodon nigroviridis]
Length = 542
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 215/490 (43%), Gaps = 49/490 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CVQAFTTEQ 71
++ HFG++V KV LL+ G + + T + + VK AL VL+Q CV +
Sbjct: 12 LLREHFGEVVEKVGTHLLKSGAQNLRTILHETGMPLDLVKKALCVLVQHGICV-----FR 66
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQM 127
GP T Y D IL +R+ +++ + +V+ LL+ G +T+ K +
Sbjct: 67 HRGPGRPTDYQSSCDRILRILRYPRYIYTAKTLYGDTGELIVEELLQRGEMTMSRTVKTV 126
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKG---- 183
DR + ++G +D + KLV H+++RCP P++ G A+ G
Sbjct: 127 ADRLTQNMEDGQSMDYSEVSSAFCKLVETHFLQRCP-------PVA---GAAKTDGAAPA 176
Query: 184 ---SKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH 240
++++ + PE+ +P +R + + GE ++N+ +K K
Sbjct: 177 APAAQASASVPTPESFADCY---KVPQVTLRGRGKRRLSGEDGEDQRNA------KKAKM 227
Query: 241 DVLELDECGVA---DEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
D E+D C + ++ + ++ NFE F R + I V LD ++ ++ ML+
Sbjct: 228 DS-EVDFCFIVTTHGDEGIYWQVNFERFHLHFRDQAIISAVANKLDQTSSEIVRTMLR-M 285
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS--- 354
S + PLS + I+ + S LD LV + FV + +S
Sbjct: 286 SEVTTPPTASCTKPLSANEIFRSLPGSYNIARPVLDQYLTLLVD-DPMEFVGRAGESGGG 344
Query: 355 -YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
Y ++ K++ +ES+V +R+G + RIFRLL + R LE ++ D + K+A
Sbjct: 345 MYVVNLHKVLANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEA 403
Query: 414 PKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
+LY L + ++++ T A F L+ N+ + +L + NL +R
Sbjct: 404 KDMLYMLLSQNLVQLQEIPKTPDFAPSRTFYLYTCNQLPTARMLLQNCYKTVANLIVRRL 463
Query: 472 YELDREKELL 481
+E K LL
Sbjct: 464 FESKESKRLL 473
>gi|426200322|gb|EKV50246.1| hypothetical protein AGABI2DRAFT_199804 [Agaricus bisporus var.
bisporus H97]
Length = 541
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 119/481 (24%), Positives = 219/481 (45%), Gaps = 47/481 (9%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
VHV HFG L A+V LL +G L+ + RYT+L + ++L L+Q N + + +
Sbjct: 14 VHV---HFGSLAAQVVSVLLTRGRLSLPQILRYTQLKPRIARASILALVQHNLL--WHAQ 68
Query: 71 QPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 130
+G + + D L R+RF K + + Q F + ELVQ +L+HG+L +
Sbjct: 69 SDEGTEV---FEFNVDECLMRLRFGKIVHMAQQLFGKAGAELVQSILDHGKLRSPDILRL 125
Query: 131 AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKI 190
+ + V R + KLV+ +Y++ P++ +L +S + + +G + AK
Sbjct: 126 LGVHDSKSITVH----RGVMHKLVSENYLK--PST--VLSHVSPADKQIKYEGEEKAKIS 177
Query: 191 GEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNN-VTPGEKRKHDVLELDECG 249
G P E ++ A + R G K K +N+ V KRK L+E
Sbjct: 178 GFPTAKE---LKQAKQVAEARMRREEEEAGKAGLKPKATNHAVHRARKRK-----LEETD 229
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 309
+ ++ +R NF+ F +R+ + R ++ AA+VL A+L T S ++ V S
Sbjct: 230 EIVDNTIYFRVNFDKFNIHIRNTLIVRAARNRYNEEAASVLRAILHLTESWQRNVAEVRS 289
Query: 310 VPLSLSSIYEE-----------VIKSEAGRNMTLDHVRASLVQLGE--------LSFVDA 350
P+S+ ++ + V+ + N T ++ G+ SF+
Sbjct: 290 EPVSVPNLVVKLANEDNLARGLVLAVKKPSNTTCIKEYLGMLSCGDNPTAVGKAASFISL 349
Query: 351 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 410
+S ++F+ I + +ESV +R+G + RI RLL +G+ ++ +IS +
Sbjct: 350 NSSKVQVEFDVIGRRLRRHVLESVTRERHGNEGVRILRLLMDTGK-MDDKQISKVVMMAG 408
Query: 411 KDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSL 468
KD +L L D + +++ + R F LW V++ + +L +++ + N+S+
Sbjct: 409 KDVRALLTALATDSLISTQEVPKSADRNPTRTFYLWYVDQHKAFSTILGQVYKSLYNISV 468
Query: 469 R 469
R
Sbjct: 469 R 469
>gi|348527048|ref|XP_003451031.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Oreochromis niloticus]
Length = 547
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 119/479 (24%), Positives = 205/479 (42%), Gaps = 26/479 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V KV LL+ G + + T LS + VK +L VL+Q F++ +
Sbjct: 12 LLQEHFGEVVEKVGTHLLKSGAQNLRTIIHETGLSVDLVKKSLCVLVQHGAT-TFSSGR- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
G + T+Y D IL +R+ +++ + +++ LL+ G T+ K +
Sbjct: 70 KGLGSPTEYHTSCDRILRILRYPRYIYTAKTLYGDTGELIIEELLQRGHTTMSSTVKTVA 129
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + EG +D + T KLV H+++RCP PL G K S +
Sbjct: 130 DRLTQNMAEGRTMDYTEVSSTFSKLVETHFLQRCP---PL-------PGVGNKDSSAPIE 179
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 248
P T V A E+ + +G ++ + E+R ++D
Sbjct: 180 TPATPGTPAAPVNTAPPTPESFPECYKVPSVTLIGRGKRQLASEDGEEQRSAKRAKMDPE 239
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
DE + ++ NFE F R + I V LD ++ ++ ML+ + + T
Sbjct: 240 THGDE-GIYWQVNFERFHLHFRDQTIISAVANKLDQTSSEIVRTMLRMSEVTTSPMATCT 298
Query: 309 SVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YSIDFEKIIE 364
PLS + I+ + S LD LV + FV + +S + ++ + +
Sbjct: 299 K-PLSANEIFRSLPPSYNILRPILDQYLTLLVD-DPMEFVGKAGESGGGMFVVNLHRALA 356
Query: 365 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 424
+ESVV +R+G + RIFRLL + R LE ++ D + K+A +LY L
Sbjct: 357 NLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKDMLYTLLSQN 415
Query: 425 YLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ ++++ T A F L+ VN+ + +L + NL R +E K LL
Sbjct: 416 LVQLQEIPKTPDYAPSRTFYLYTVNQLPTARMLLQNCYKTVANLIERRLFETKESKRLL 474
>gi|355389071|gb|AER62478.1| hypothetical protein [Aegilops speltoides subsp. speltoides]
Length = 252
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 14/257 (5%)
Query: 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 170
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFN 64
Query: 171 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 229
P +E+ AR++ K+A+++ ++EQ+V+ A + RFS + D +
Sbjct: 65 PQEDEQSTGARRRVPKTAEEV---LSLEQKVINTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 230 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 287
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 347
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQC 234
Query: 348 VDASSDSYSIDFEKIIE 364
+ + ++ D K++E
Sbjct: 235 TTSDGEEFTFDLRKMVE 251
>gi|348587154|ref|XP_003479333.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Cavia
porcellus]
Length = 534
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 218/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L++ G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIKTGSQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +RF +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCSRVLRMLRFPRYIYTTKALYGDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+L +V+RCP + P + + G
Sbjct: 116 MTMSAVVKKVADRLTDTMEDGKTMDYAEVSNTFVQLADTRFVQRCPM---VHAPENSDTG 172
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P P VV + S++ G++ ++S+ GE
Sbjct: 173 P--------------PPPAPSLVVNEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++ N + F + R + ++ V +D ++ ++ AML+
Sbjct: 214 KAKKPKRTTDNKEPTPDDGIYWQTNLDRFHQHFRDQAIVNAVANRMDQTSSEIVRAMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ +V T + P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EVTTSSDAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+F K + +ESV+ +R+G RIFRL+ + + LE ++ D +
Sbjct: 329 SGGGMYVINFHKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSVTNLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|302835680|ref|XP_002949401.1| hypothetical protein VOLCADRAFT_89829 [Volvox carteri f.
nagariensis]
gi|300265228|gb|EFJ49420.1| hypothetical protein VOLCADRAFT_89829 [Volvox carteri f.
nagariensis]
Length = 634
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 149/297 (50%), Gaps = 23/297 (7%)
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
A+ V++R N + F R RH+ + +R D+ AA V++AML E VK +
Sbjct: 339 AAAEPPVVLWRVNNDEFNRVFRHQAMVGLIREKFDEDAAAVVTAMLATARPHEASVKEER 398
Query: 309 SVPLSLSSIYEEVIK-SEAG--RNMTLDHVRASLVQLGELSFVDAS--------SDSYSI 357
SVPLS I V + + AG + V A L L F S S Y I
Sbjct: 399 SVPLSEGEIETTVGRLTTAGVLEALPQQPVSAVLRTLASDPFEMFSLAATGMQGSPMYVI 458
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
+ +++I++ +++E+VV RY R+FRLL+ G+ LE +I+D + +KD ++L
Sbjct: 459 NSQRVIDLIMLKQIEAVVKSRYDIAGLRVFRLLALRGQ-LEQKQIADLAMLPQKDTRELL 517
Query: 418 YKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
Y++ G++L++ + + R F W+V+ + + ++F A + R+ +E++
Sbjct: 518 YRMLAGGFVLLQDIPKSADRAPSRSFYTWRVSVTAICEATAGQLFRATGRVHQRLKFEME 577
Query: 476 REKELLNLPADKR---------TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+EKELL L + T + NR++++ ++E+S LD+ I +F+DF
Sbjct: 578 KEKELLGLLESAKEAKTVNFTLTTAQRQAVNRLKRMSEVMETSLQHLDEMIAVFNDF 634
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 15/214 (7%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
++ A+ ++ +GD V V + L KG L + R T LS VK ALL+LIQQNC
Sbjct: 6 QFACDLAIRLVQEQYGDAVGGVFKYLAAKGQLPLGEIIRGTGLSASLVKQALLILIQQNC 65
Query: 64 VQAFTTEQPD-----GPKANTQ-YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
V + QP G + + Y +L +R ++FL + E + +V LL
Sbjct: 66 VSVYL--QPGEESFRGARPSFHVYECDLGRVLQIIRHSRFLLHIRDEAGEVAEHIVAQLL 123
Query: 118 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP---ASEPLLMP--- 171
+ GRL + Q+ + + D++R T + LV AHYVER P A P + P
Sbjct: 124 QDGRLRMDQVLGGVAARMGKAQEEVADTIRNTFISLVQAHYVERAPLCNAPPPTIRPHPN 183
Query: 172 -ISEEEGPARKKGSKSAKKIGEPETIEQQVVEAA 204
+ + PA + +A++ T+E+ +E A
Sbjct: 184 SVKARKKPAGGGEAFAAEQGAASRTLEELAIEKA 217
>gi|402855948|ref|XP_003892570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Papio anubis]
Length = 545
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 118/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 71
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 72 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 126
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 127 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 181
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 182 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGQ-----GKRRRSSDEDAAGEP 224
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 225 KAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 284
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 285 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 339
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 340 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 398
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 399 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 458
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 459 ERRQFETKENKRLL 472
>gi|198278473|ref|NP_083201.1| DNA-directed RNA polymerase III subunit RPC3 [Mus musculus]
gi|51703312|sp|Q9D483.1|RPC3_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|12855605|dbj|BAB30395.1| unnamed protein product [Mus musculus]
gi|148706970|gb|EDL38917.1| mCG14870 [Mus musculus]
gi|187956591|gb|AAI51029.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
gi|223462077|gb|AAI47486.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
Length = 533
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 107/482 (22%), Positives = 213/482 (44%), Gaps = 46/482 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T+ S +QVK AL VLI N V +
Sbjct: 12 LLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVLYHVHK-- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + V+L H+V+RCP L+P ++ +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDTD------------SS 169
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 248
G P V+ + S++ G++ ++S+ GE + D
Sbjct: 170 DRGPPPPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEPKAKKPRYTDNK 224
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
+ + + ++ N + F + R + + V +D ++ ++ ML+ + ++ T +
Sbjct: 225 EPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTPS 279
Query: 309 SVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFEK 361
S P + E+ +S G N++ + L L + L F+ S DS + I+ K
Sbjct: 280 SAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMFVINLHK 339
Query: 362 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
+ +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 ALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKML 398
Query: 422 KDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
+ ++L++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 SENFILLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKR 458
Query: 480 LL 481
LL
Sbjct: 459 LL 460
>gi|402855946|ref|XP_003892569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Papio anubis]
Length = 534
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 219/483 (45%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I E + +P + S++ G++ ++S+ GE K K D
Sbjct: 181 VINEKDMY-------LVP----KLSLIGQ-----GKRRRSSDEDAAGEPKAKRPKHTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|355558345|gb|EHH15125.1| hypothetical protein EGK_01174 [Macaca mulatta]
gi|355745608|gb|EHH50233.1| hypothetical protein EGM_01026 [Macaca fascicularis]
gi|380808874|gb|AFE76312.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
gi|383413173|gb|AFH29800.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
gi|384944846|gb|AFI36028.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
Length = 534
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 219/483 (45%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I E + +P + S++ G++ ++S+ GE K K D
Sbjct: 181 VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKHTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|73981410|ref|XP_540277.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Canis
lupus familiaris]
Length = 534
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 221/497 (44%), Gaps = 53/497 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+L H+V+RCP +P +E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----WVPATENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
P + P + + +P + S++ G++ ++S+ GE
Sbjct: 171 PGPLPPA--------PILVISEKDMYLVP----KLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 238 R----KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 293
+ KH+ D + + ++AN + F + R + + V +D ++ ++ M
Sbjct: 214 KAKRPKHNT---DNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 270
Query: 294 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDA 350
L+ + ++ T ++ P + E+ +S G N++ + L L + L FV
Sbjct: 271 LRMS-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGK 325
Query: 351 SSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 326 SGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFA 384
Query: 407 FVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAAL 464
+ K+A +LYK+ ++ ++++ T A F L+ VN + +L + +
Sbjct: 385 MIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIA 444
Query: 465 NLSLRVSYELDREKELL 481
NL R +E K LL
Sbjct: 445 NLIERRQFETKENKRLL 461
>gi|332809810|ref|XP_513732.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 6
[Pan troglodytes]
Length = 545
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 71
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 72 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 126
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 127 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 181
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 182 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 224
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 225 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 284
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 285 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 339
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 340 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 398
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 399 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 458
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 459 ERRQFETKENKRLL 472
>gi|410171279|ref|XP_003960210.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 2 [Homo sapiens]
Length = 547
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 74 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 128
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 129 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 183
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 184 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 226
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 227 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 286
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 287 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 341
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 342 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 400
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 401 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 460
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 461 ERRQFETKENKRLL 474
>gi|332237888|ref|XP_003268139.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Nomascus leucogenys]
Length = 555
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 22 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 81
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 82 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 136
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 137 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 191
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 192 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 234
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 235 KAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 294
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 295 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 349
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 350 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 408
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 409 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNTLSAARMLLHRCYKSIANLI 468
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 469 ERRQFETKENKRLL 482
>gi|21359969|ref|NP_006459.3| DNA-directed RNA polymerase III subunit RPC3 [Homo sapiens]
gi|114558425|ref|XP_001161607.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 5
[Pan troglodytes]
gi|410171277|ref|XP_003960209.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 1 [Homo sapiens]
gi|60393871|sp|Q9BUI4.1|RPC3_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C; AltName:
Full=RNA polymerase III 62 kDa subunit; Short=RPC62
gi|325053851|pdb|2XUB|A Chain A, Human Rpc62 Subunit Structure
gi|325053852|pdb|2XV4|S Chain S, Structure Of Human Rpc62 (Partial)
gi|12803519|gb|AAH02586.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Homo
sapiens]
gi|20159753|gb|AAM12033.1| RNA polymerase III subunit RPC62 [Homo sapiens]
gi|119591841|gb|EAW71435.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_b [Homo sapiens]
gi|119591842|gb|EAW71436.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_b [Homo sapiens]
gi|208967092|dbj|BAG73560.1| polymerase (RNA) III (DNA directed) polypeptide C [synthetic
construct]
gi|410225476|gb|JAA09957.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410258100|gb|JAA17017.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410290358|gb|JAA23779.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410349833|gb|JAA41520.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
Length = 534
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 171 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 329 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|332237890|ref|XP_003268140.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Nomascus leucogenys]
Length = 534
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/483 (23%), Positives = 219/483 (45%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I E + +P + S++ G++ ++S+ GE K K D
Sbjct: 181 VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKHTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFMSLQEIPKTPDHAPSRTFYLYTVNTLSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|4753153|emb|CAB41919.1| RNA polymerase III subunit [Homo sapiens]
Length = 534
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 171 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 329 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|296228565|ref|XP_002759865.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Callithrix jacchus]
Length = 534
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 218/483 (45%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I E + +P + S++ G++ ++S+ GE K K D
Sbjct: 181 VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKHTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N+ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNIAKQVLDQYLTLLADDPLQFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|355712759|gb|AES04456.1| polymerase III polypeptide C [Mustela putorius furo]
Length = 533
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 112/483 (23%), Positives = 215/483 (44%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V + +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLV-IYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T ++L H+V+RCP +P +E P +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFMRLADTHFVQRCP-----WVPATENSDPGPLPPA---- 177
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
P + + +P + S++ G++ ++S+ GE K K D
Sbjct: 178 ----PILVISEKDMYLVP----KLSLIGK-----GKRRRSSDEDATGEPKAKRSKHSTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTP 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
++ P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SAAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|297663832|ref|XP_002810369.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Pongo abelii]
Length = 534
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/494 (23%), Positives = 221/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIADDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRILRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+LV H+V+RCP+ +P +E
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPS-----VPTTENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + V+ + S++ G++ ++S+ GE
Sbjct: 171 PGPPPPAPTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 329 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|397469197|ref|XP_003806248.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Pan paniscus]
Length = 545
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 71
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 72 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 126
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 127 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 181
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + +++ G++ ++S+ GE
Sbjct: 182 PGPPPPAPTL-VINEKDMY-------LVP----KLTLIGK-----GKRRRSSDEDAAGEP 224
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 225 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 284
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 285 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 339
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 340 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 398
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 399 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 458
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 459 ERRQFETKENKRLL 472
>gi|296228563|ref|XP_002759864.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Callithrix jacchus]
Length = 547
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 222/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 74 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 128
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 129 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 183
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 184 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 226
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 227 KAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 286
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N+ + L L + L FV S D
Sbjct: 287 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNIAKQVLDQYLTLLADDPLQFVGKSGD 341
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 342 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 400
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 401 AKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 460
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 461 ERRQFETKENKRLL 474
>gi|338725136|ref|XP_001499327.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Equus
caballus]
Length = 534
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 113/483 (23%), Positives = 215/483 (44%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V + +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLV-IYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----FVPATENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
V+ + S++ G++ ++S+ GE K K D
Sbjct: 181 -----------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEPKAKRPKHTADN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R +G + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQGIVSAVANRMDQTSSEIVRTMLRMS-----EITTP 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
++ P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SNAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|397469195|ref|XP_003806247.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Pan paniscus]
Length = 534
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + +++ G++ ++S+ GE
Sbjct: 171 PGPPPPAPTL-VINEKDMY-------LVP----KLTLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 329 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|335775071|gb|AEH58449.1| DNA-directed RNA polymerase III subunit RPC-like protein [Equus
caballus]
Length = 508
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 113/483 (23%), Positives = 215/483 (44%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V + +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLV-IYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RCVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP PA +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPFV------------PANENSDPGPP 174
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I ++ + +P + S++ G++ ++S+ GE K K D
Sbjct: 175 PPAPTLVINEKDM-YLVP----KLSLIGK-----GKRRRSSDEDATGEPKAKRPKHTADN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R +G + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQGIVSAVANRMDQTSSEIVRTMLRMS-----EITTP 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
++ P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SNAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|426331118|ref|XP_004026542.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Gorilla gorilla gorilla]
Length = 547
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 115/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQSLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 74 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 128
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 129 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 183
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 184 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 226
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 227 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 286
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 287 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 341
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 342 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 400
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ V + +L + + NL
Sbjct: 401 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVTILSAARMLLHRCYKSIANLI 460
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 461 ERRQFETKENKRLL 474
>gi|297818094|ref|XP_002876930.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322768|gb|EFH53189.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 288
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 36/297 (12%)
Query: 145 SLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAA 204
S++E+L KLV AH+VER P+ +P S R++G+ ++++V++ A
Sbjct: 15 SVKESLKKLVAAHFVERSPSLDP-----SFGRDLPRRRGATYPLFFDNLIVLKKKVLQTA 69
Query: 205 LPMEAMRF--SVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANF 262
P E +RF + N +S++ ++ KRK DV D + + +R NF
Sbjct: 70 -PAEDIRFPLTAFANTDSNIAKR-----------KRKPDVDASDPSKL-----ITWRPNF 112
Query: 263 EGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVI 322
E FI RLRHK C+D V+ + + VL AML SAE+KV+ S +S+ S +EV
Sbjct: 113 EEFISRLRHKACLDIVKKNKGEECVAVLRAMLN-VKSAEEKVEKGQSGRMSVGSFSKEV- 170
Query: 323 KSEAGRNMTLDHVRASLVQLGEL---------SFVDASSDSYSIDFEKIIEIAQNEEVES 373
K+E G + + V L +L +FV SY +DFE II + + E+++
Sbjct: 171 KTEDGHPLLQEIVVECLGKLSSSSSSSSSSLPAFVIEMDGSYRVDFESIISVPRYHEMKA 230
Query: 374 VVSKRYGRDAYRIFR-LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429
V + YG + ++F LL K L ET +I +E++ A + L+ + K GY+ ME
Sbjct: 231 AVKRTYGEEFSQMFNYLLEKEDCLFETSEIVGAVEIEEEAALRGLFDMRKGGYVRME 287
>gi|395535853|ref|XP_003769935.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3
[Sarcophilus harrisii]
Length = 535
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/496 (23%), Positives = 219/496 (44%), Gaps = 50/496 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVDKIGTHLIRTGSQPLRAIVHGTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + +Y IL +R+ +++ + +V+ LL +G+
Sbjct: 61 NLVTYQIHK-----RGIVEYEAHCSRILRILRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T +L H+V+RCP L+P E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSSTFCRLADTHFVQRCP-----LVPDPPESA 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
A+ I E + +P + +++ G++ ++S++ GE
Sbjct: 171 EAQPPPPAPTLSINEKDMY-------LVP----KLNLIGK-----GKRRRSSDDDAAGEP 214
Query: 237 --KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
KR E E D + ++AN + F + R + ++ V +D ++ ++ ML
Sbjct: 215 RPKRPKQTAESKEPMPDD--GIYWQANLDRFHQHFRDQSIVNAVANRMDQTSSEIVRTML 272
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDAS 351
+ + ++ T + P + E+ +S G N++ + L L + L FV S
Sbjct: 273 RMS-----EITTSSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKS 327
Query: 352 SDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
DS Y I+ K + +ES+V +R+G RIFRL+ + + LE ++ D
Sbjct: 328 GDSGGGMYVINLHKALASLAMATLESIVQERFGSRCARIFRLVLRK-KHLEQKQVEDFAM 386
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALN 465
+ K+A +LYKL + + ++++ T A F L+ VN + +L + + N
Sbjct: 387 IPAKEAKDMLYKLLSENLISLQEIPKTPDHAPSRTFYLYTVNSLSAARMLLRRCYKSIAN 446
Query: 466 LSLRVSYELDREKELL 481
L R +E K LL
Sbjct: 447 LIERRQFETRENKRLL 462
>gi|426331116|ref|XP_004026541.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Gorilla gorilla gorilla]
Length = 534
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/483 (23%), Positives = 219/483 (45%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + + T S +QVK AL VL+Q N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQSLRVIAHDTGTSLDQVKKALCVLVQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I E + +P + S++ G++ ++S+ GE K K D
Sbjct: 181 VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKYTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ V + +L + + NL R +E K
Sbjct: 399 LSENFMSLQEIPKTPDHAPSRTFYLYTVTILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|297279785|ref|XP_002808279.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like [Macaca mulatta]
Length = 545
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 222/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 71
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 72 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 126
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 127 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 181
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 182 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 224
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 225 KAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 284
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G ++ + L L + L FV S D
Sbjct: 285 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYXISKQVLDQYLTLLADDPLEFVGKSGD 339
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 340 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 398
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 399 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 458
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 459 ERRQFETKENKRLL 472
>gi|444728584|gb|ELW69034.1| DNA-directed RNA polymerase III subunit RPC3 [Tupaia chinensis]
Length = 1120
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 117/481 (24%), Positives = 210/481 (43%), Gaps = 51/481 (10%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV--QAFTTEQPDG 74
HFG++V K+ L+R G + + T S +QVK AL VLIQ N V Q
Sbjct: 602 HFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVIYQVHKC----- 656
Query: 75 PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMFDR 130
+Y +L +R+ +++ + +V+ LL +G++T+ K++ DR
Sbjct: 657 --GVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVTDR 714
Query: 131 AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKI 190
+ ++ +D + T V+L H+V+RCP L+P +E+ +
Sbjct: 715 LTETMEDSKTMDYAEVSNTFVRLADTHFVQRCP-----LVPATEK------------SES 757
Query: 191 GEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDECG 249
G P V+ E + V T G++ ++S GE K K D
Sbjct: 758 GPPPPAPTLVI-----TEKDMYLVPTLSLIGKGKRRRSSEEDAAGEPKAKRPKHSTDNKE 812
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 309
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T +S
Sbjct: 813 PTPDDGIYWQANLDRFRQHFRDQAIMSAVANRMDQTSSEIVRTMLRMS-----EITTPSS 867
Query: 310 VPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFEKI 362
P +L E+ +S G N++ + L L + L FV S DS Y I K
Sbjct: 868 APFTLPLFSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVISLHKA 927
Query: 363 IEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWK 422
+ +ESVV +R+G RIF L+ + + LE ++ D + K+A +LYK+
Sbjct: 928 LASLATATLESVVQERFGSRCARIFCLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKMLS 986
Query: 423 DGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL 480
+ ++ ++++ T A F L+ VN + + +L + + NL R +E K L
Sbjct: 987 ENFMSLQEIPKTPDHAPSRTFYLYIVNVLSVARMLLHRCYKSIANLIERRQFEARENKRL 1046
Query: 481 L 481
L
Sbjct: 1047 L 1047
>gi|62898387|dbj|BAD97133.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) variant
[Homo sapiens]
Length = 534
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 222/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVRLIRTGSQPLRVIAHDTGTSLDQVKKALCVLAQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 171 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 329 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLEK-KHIEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|410171281|ref|XP_003960211.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 3 [Homo sapiens]
Length = 484
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 110/480 (22%), Positives = 214/480 (44%), Gaps = 47/480 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
V+ + S++ G++ ++S+ GE K K D
Sbjct: 181 -----------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKYTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
>gi|410968182|ref|XP_003990588.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Felis
catus]
Length = 534
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 115/494 (23%), Positives = 219/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+L H+V+RCP +P++E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYSEVSNTFVRLADTHFVQRCP-----WVPVTENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
I E + +P + S++ G++ ++S+ GE
Sbjct: 171 -PGPPPPAPILVISEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKHGTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T ++ P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 329 SGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>gi|395842050|ref|XP_003793833.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Otolemur
garnettii]
Length = 534
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 112/483 (23%), Positives = 213/483 (44%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V + +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLKVIAHDTGTSLDQVKKALCVLIQHNLV-IYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLQMLRYPRYIYTTKTLYSDPGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T +L H+V+RCP L+P ++ P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFARLADTHFVQRCP-----LVPTTDNSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
V+ + S++ G++ ++S+ GE K K D
Sbjct: 181 -----------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKHTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTP 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+ P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|431896577|gb|ELK05989.1| DNA-directed RNA polymerase III subunit RPC3 [Pteropus alecto]
Length = 577
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 114/483 (23%), Positives = 218/483 (45%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + + T S +QVK AL VLIQ N V + +
Sbjct: 56 LLQEHFGEIVEKIGVHLIRNGSQSLRVIAHDTGTSLDQVKKALCVLIQHNLV-IYQVHK- 113
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ I + +V+ LL +G++T+ K++
Sbjct: 114 ---RGVVEYEAQCSRVLRMLRYPRYIYIAKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 170
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T ++L H+V+RCP ++P +E P + +
Sbjct: 171 DRLTETMEDGKTMDYAEVSNTFMRLADTHFVQRCP-----MVPATENSDPGPPPPAPTL- 224
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I E + +P + S++ G++ ++S + GE K K D
Sbjct: 225 VINEKDMY-------LVP----KLSLIGK-----GKRRRSSEDDATGEPKAKRPKHTTDN 268
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + +V T
Sbjct: 269 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRVS-----EVTTP 323
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+ P + E+ +S G N+ + L L + L FV S DS Y I+
Sbjct: 324 SGAPFTQPLSSHEIFRSLPVGYNIAKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 383
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 384 KALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 442
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
+ ++ ++++ T A F L+ V+ + +L + + NL R +E K
Sbjct: 443 LSENFISLQEIPKTPDHAPSRTFYLYTVSILSAARMLLHRCYKSIANLIERRQFETKENK 502
Query: 479 ELL 481
LL
Sbjct: 503 RLL 505
>gi|281353327|gb|EFB28911.1| hypothetical protein PANDA_013978 [Ailuropoda melanoleuca]
Length = 533
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/483 (23%), Positives = 213/483 (44%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V + +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRAIAHDTGTSLDQVKKALCVLIQHNLV-IYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP PA +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPWV------------PATENSDPGPP 174
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I ++ + +P + S++ G++ ++S+ GE K K D
Sbjct: 175 PPAPILVISEKDM-YLVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKHSTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTP 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
++ P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 STAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|301778375|ref|XP_002924602.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Ailuropoda melanoleuca]
Length = 534
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 112/483 (23%), Positives = 213/483 (44%), Gaps = 47/483 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V + +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRAIAHDTGTSLDQVKKALCVLIQHNLV-IYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP PA +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPWV------------PATENSDPGPP 174
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
I ++ + +P + S++ G++ ++S+ GE K K D
Sbjct: 175 PPAPILVISEKDM-YLVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKHSTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTP 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
++ P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 STAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 KALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 LSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENK 458
Query: 479 ELL 481
LL
Sbjct: 459 RLL 461
>gi|344306663|ref|XP_003422005.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Loxodonta africana]
Length = 534
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 117/485 (24%), Positives = 218/485 (44%), Gaps = 51/485 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVTYQVHK-- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTSKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP L+P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----LVPATENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE---KRKHDVLEL 245
I E + +P + S++ G++ ++S GE KR E
Sbjct: 181 VINEKDMY-------LVP----KLSLIGK-----GKRRRSSEEDAAGEPKAKRLKHTTEN 224
Query: 246 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 305
E + D+ + ++AN + F + R + + V +D ++ ++ ML+ + ++
Sbjct: 225 KE-PIPDD-GIYWQANLDRFHQHFRDQTIVSAVANRMDQTSSEIVRTMLRMS-----EIT 277
Query: 306 TKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSID 358
T + P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 278 TPSCAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVIN 337
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +LY
Sbjct: 338 LHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLY 396
Query: 419 KLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
K+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 397 KMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKE 456
Query: 477 EKELL 481
K LL
Sbjct: 457 NKRLL 461
>gi|390345722|ref|XP_799017.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Strongylocentrotus purpuratus]
Length = 532
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/485 (22%), Positives = 207/485 (42%), Gaps = 54/485 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V K+C LL+ G ++V + EQVK AL VLIQ N V+ +
Sbjct: 12 LVQEHFGDVVEKICTHLLKNGSNNFRSVVSTVKEKPEQVKKALCVLIQHNIVKYGLNK-- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ +Y + L VR+ +++ + +V+ +L HG + + + ++ K
Sbjct: 70 ---RGMVEYTADVEKALLLVRYPRYIYSAKTLYGDIGELIVEEVLHHGEILMSNVVEKVK 126
Query: 133 SSEKE---GNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
KE GN ++ ++++ + LV H+++R P S SA
Sbjct: 127 VRLKEAMEGNQLEPSAIKDKFIDLVNTHFLQRLP--------------------SWSA-- 164
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
E E+ V +P ++ + + + G K + G +
Sbjct: 165 ----EDDEESKVIPLIPHLSVSDADLYRIPETAGVTGKRKRPLNDGGRSSKRARSSSVGS 220
Query: 250 VADEQ-----SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 304
D++ + ++ NFE F R R + I + +D A +V++ ML+ S
Sbjct: 221 EPDQEVPLDDGIYWKVNFERFHRYFRDQDIISAITQRIDKSAGDVVATMLR-MSELTTDF 279
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMT------LDHVRASLVQLGELSFVDASSDSYSID 358
+ + PLS I ++ K R + LD + + G DA Y ID
Sbjct: 280 MARETKPLSFHDIARQMPKKLENRQLEQYMKLLLDDQTMIVKKYG-----DAGGGMYEID 334
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
E+ + +ESVV +R+G ++RIF+ L K + LE +I + + K+A +++Y
Sbjct: 335 LEQASRVICTANIESVVQERFGSKSFRIFKTLLKK-KYLEQKQIENFALIPAKEAKELVY 393
Query: 419 KLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
+++ + ++ ++++ T A F L+ V + + + + + +NL R +E
Sbjct: 394 QMFAENFITVQEIPRTPDHAPSRTFYLFTVELGQVTFMLAERCYKSLINLMTRRHFESAE 453
Query: 477 EKELL 481
K L+
Sbjct: 454 NKRLI 458
>gi|148234765|ref|NP_001086474.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Xenopus
laevis]
gi|49670421|gb|AAH75179.1| Polr3c-prov protein [Xenopus laevis]
Length = 529
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 115/484 (23%), Positives = 213/484 (44%), Gaps = 54/484 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ H+G++VA+V L+R G + + T S +QVK AL VLIQ N V T Q
Sbjct: 12 LLEEHYGEIVARVGTFLIRTGNQPLRVIVNETGTSLDQVKKALCVLIQHNLV----TYQL 67
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ + +Y D LH +R+ +++ + +V+ L +G++TL K++
Sbjct: 68 N-KRGFVEYRAHCDRFLHILRYPRYIYTAKTLYGDTGELIVEELQLNGKMTLSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++ ++ + T L H+V+RCP G K ++
Sbjct: 127 DRLTETMEDSKSMEYSEVSATFTHLADTHFVQRCP-------------GLQEKDATE--- 170
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKNSNNVTPGEKRKHDVLELDE 247
G P + L M+ ++ V + G++ ++S++ G + K + +
Sbjct: 171 --GRPP------LAPTLQMDEKEMYIIPKVNLTGRGKRRRSSDDDDGGSQAKR---QKKD 219
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
V+ + + ++ N E F + R + I V +D ++ ++ ML+ + +V T
Sbjct: 220 TEVSQDDGIYWQVNTERFHQHFRDQAIISAVSNKMDQTSSEIVRTMLRMS-----EVTTS 274
Query: 308 NSV----PLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YSIDF 359
+S PLS + I+ + LD +L+ L +V S DS + I+
Sbjct: 275 SSAAYTQPLSSNEIFRSLPTGYNVSKQVLDQY-LTLLADDPLEYVGRSGDSGGGMFVINL 333
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
K + +ES+V +R+G + RIFRLL + R LE ++ D V K+A ++LYK
Sbjct: 334 HKAVASLATATLESLVQERFGSRSARIFRLLLRK-RHLEQKQVEDLAMVPAKEAKEMLYK 392
Query: 420 LWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 477
+ + ++++ T A F L+ VN + +L + NL R ++
Sbjct: 393 MLSQNLVSLQEIPKTPDHAPSRTFYLYTVNTLPCARMLLQRCYKTVANLIERRQFDTKEN 452
Query: 478 KELL 481
K LL
Sbjct: 453 KRLL 456
>gi|351703764|gb|EHB06683.1| DNA-directed RNA polymerase III subunit RPC3 [Heterocephalus
glaber]
Length = 534
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 114/497 (22%), Positives = 218/497 (43%), Gaps = 53/497 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLMLQEHFGEIVEKIGVHLIRTGSQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAHCSRVLRMLRYPRYIYTTKALYGDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T ++L +V+RCP + P + +
Sbjct: 116 MTMSAVVKKVADRLTETVEDGKTMDYAEVSNTFMQLADTRFVQRCPM---VHAPENSDTQ 172
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P P V+ + S++ G++ ++S+ GE
Sbjct: 173 P--------------PPPAPNLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 ---KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 293
+ KH D + + ++AN + F + R + + V +D ++ ++ AM
Sbjct: 214 AAKRPKHPT---DNKEPIPDDGIYWQANLDRFHQHFRDQTIVSAVANRMDQTSSEIVRAM 270
Query: 294 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDA 350
L+ + +V T + P + E+ +S G N++ + L L + L FV
Sbjct: 271 LRMS-----EVTTSSDAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGK 325
Query: 351 SSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
S DS Y I+F K + +ESV+ +R+G RIFRL+ + + LE ++ D
Sbjct: 326 SGDSGGGMYVINFCKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFA 384
Query: 407 FVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAAL 464
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 385 MIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSVT 444
Query: 465 NLSLRVSYELDREKELL 481
NL R +E K LL
Sbjct: 445 NLIERRQFETKENKRLL 461
>gi|355389039|gb|AER62462.1| hypothetical protein [Agropyron mongolicum]
Length = 214
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 12/224 (5%)
Query: 161 RCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVES 220
RCP +EP P +E PAR + K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPYFDPREDESTPARXRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSME 57
Query: 221 DVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHV 278
D + ++ G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 DASKTNDCPHSAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRK 117
Query: 279 RAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRAS 338
+ L G + + +A + K NSV SL+ I E++ + E G M++ ++
Sbjct: 118 KPKLKVGTHPIWESFFEANLTD----KDTNSVTSSLNGILEKLGQKEGGAAMSIGDIKPV 173
Query: 339 LVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRD 382
L +L + + ++ D K++E +NEE+ES+V K+YG++
Sbjct: 174 L---QDLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQE 214
>gi|126313694|ref|XP_001368997.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3
[Monodelphis domestica]
Length = 535
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 116/496 (23%), Positives = 219/496 (44%), Gaps = 50/496 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVDKIGTHLIRTGGQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + +Y IL +R+ +++ + +V+ LL +G+
Sbjct: 61 NLVTYQIHK-----RGIVEYEAHCSRILRILRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T +L H+V+RCP +P +
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYSEVSSTFGRLADTHFVQRCP-----FVPDPTDSA 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
A+ I E + +P + +++ G++ ++S++ GE
Sbjct: 171 DAQPPPPAPTLSINEKDMY-------LVP----KLNLIGK-----GKRRRSSDDDAAGEP 214
Query: 237 --KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
KR E E + D+ + ++AN + F + R + + V +D ++ ++ ML
Sbjct: 215 KPKRPKQTAESKE-PIPDD-GIYWQANLDRFHQHFRDQSIVSAVANRMDQTSSEIVRTML 272
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDAS 351
+ + ++ T + P + E+ +S G N++ + L L + L FV S
Sbjct: 273 RMS-----EITTSSCAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKS 327
Query: 352 SDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
DS Y I+ K + +ES+V +R+G RIFRL+ + + LE ++ D
Sbjct: 328 GDSGGGMYVINLHKALASLAMATLESIVQERFGSRCARIFRLVLRK-KHLEQKQVEDFAM 386
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALN 465
+ K+A +LYKL + + ++++ T A F L+ VN + +L + + N
Sbjct: 387 IPAKEAKDMLYKLLSENLISLQEIPKTPDHAPSRTFYLYTVNSLSAARMLLRRCYKSIAN 446
Query: 466 LSLRVSYELDREKELL 481
L R +E K LL
Sbjct: 447 LIERRQFETKENKRLL 462
>gi|443690865|gb|ELT92883.1| hypothetical protein CAPTEDRAFT_158707 [Capitella teleta]
Length = 525
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 109/487 (22%), Positives = 219/487 (44%), Gaps = 61/487 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++ K+ LLRKG + + + + ++VK L LIQ V F+ +
Sbjct: 12 ILREHFGEVAEKIVNYLLRKGSTSLKPLTTECGFTLDKVKRCLAALIQHGIV-TFSQHKA 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR-- 130
+Y DN+L + F +++ F + +++ LL G+LT+ +R
Sbjct: 71 ----GFVEYFASVDNVLSYLFFPQYINCAKTLFGDESELIIEELLHQGQLTMSGTINRVT 126
Query: 131 -----AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 185
A+SS+ D+ +R+ V L+ +V++CP LL P S+ PA + ++
Sbjct: 127 QRLAQAESSQ------DVYGVRDKFVDLIKTQFVKQCP----LLTPDSKARSPAFAEDTE 176
Query: 186 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE- 244
+ P +A V ++ V K K S++ RK LE
Sbjct: 177 N-------------------PEQAFTVPQV-DLAGLVKRKRKISDDENEDHARKKRKLEN 216
Query: 245 --LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT--SSA 300
++CG ++ + + N F + LR + + V +D A +++ L+ + +A
Sbjct: 217 SAAEKCG---DEGIYWTINHARFQQYLRDQAIVTAVSRKVDVRAGEIIACFLRISEMKTA 273
Query: 301 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YS 356
+ + T ++ + I++ + K LD +V+ F+ + DS ++
Sbjct: 274 SESISTN---AITYNEIFQSLPKEMGITRQILDQYLRIIVEDAS-DFLQKTGDSGGGMFA 329
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
I+F++ + V+SV+ ++YG R++RLL+ G LE +I + + K+A ++
Sbjct: 330 INFQRAFKHLCQAHVQSVIGEKYGSKCLRVYRLLAMKGH-LEQKQIEEMAMIPAKEAKEM 388
Query: 417 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
LY L+ + + ++++ T A F L+ + + + +L + A LN+ LR ++E
Sbjct: 389 LYSLFDEQLVTIKEVPKTPDHAPSRTFYLFGIQLNQVARMLLQKTTKAMLNVCLRRAHET 448
Query: 475 DREKELL 481
+ + LL
Sbjct: 449 QQHRRLL 455
>gi|444708696|gb|ELW49743.1| DNA-directed RNA polymerase III subunit RPC3 [Tupaia chinensis]
Length = 628
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 214/497 (43%), Gaps = 59/497 (11%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNV-----KRYTELSDE-------QVKNALLVL 58
++ + D + E LL G +T V R TE ++ +VK AL VL
Sbjct: 92 IYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDSKTMDYAEVKKALCVL 151
Query: 59 IQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 118
IQ N V + + + +Y +L +R+ +++ + +V+ LL
Sbjct: 152 IQHNLV-IYQVHK----RGVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVEELLL 206
Query: 119 HGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 174
+G++T+ K++ DR + ++ +D + T V+L H+V+RCP L+P +E
Sbjct: 207 NGKMTMSAVVKKVADRLTETMEDSKTMDYAEVSNTFVRLADTHFVQRCP-----LVPATE 261
Query: 175 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 234
+ P G P V+ + S++ G++ ++S
Sbjct: 262 KSEP------------GPPLPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSEEDAA 304
Query: 235 GE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 293
GE K K D + + ++AN + F + R + + V +D ++ ++ M
Sbjct: 305 GEPKAKRPKHSTDNKEPTPDDGIYWQANLDRFRQHFRDQAIVSAVANRMDQTSSEIVRTM 364
Query: 294 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDA 350
L+ + ++ T +S P +L E+ +S G N++ + L L + L FV
Sbjct: 365 LRMS-----EITTPSSAPFTLPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGK 419
Query: 351 SSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 420 SGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFA 478
Query: 407 FVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAAL 464
+ K+A +LYK+ + ++ ++++ T A F L+ VN + + +L + +
Sbjct: 479 MIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNVLSVARMLLHRCYKSIA 538
Query: 465 NLSLRVSYELDREKELL 481
NL R +E K LL
Sbjct: 539 NLIERRQFETRENKRLL 555
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-IYQVHK----RGVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 159
+T+ K++ DR + ++ +D +++ L L+ + V
Sbjct: 116 MTMSAVVKKVADRLTETMEDSKTMDYAEVKKALCVLIQHNLV 157
>gi|354472867|ref|XP_003498658.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Cricetulus
griseus]
gi|344238652|gb|EGV94755.1| DNA-directed RNA polymerase III subunit RPC3 [Cricetulus griseus]
Length = 533
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/482 (21%), Positives = 209/482 (43%), Gaps = 46/482 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLI N V +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIHHNLVIYRVHK-- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
++ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RSVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + V+L H+V+RCP L+P + G
Sbjct: 127 DRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPAT---------GDSDPG 172
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 248
T+ V+ + S++ G++ ++S+ GE + D
Sbjct: 173 PPPPAPTL---VINEKDMYLVPKLSLIGK-----GKRRRSSDEDASGEPKAKKPKHTDNK 224
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
+ + ++ N + F + R + + V +D ++ ++ ML+ + ++ T +
Sbjct: 225 EPIPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTPS 279
Query: 309 SVPLSLSSIYEEVIKSEAGR-NMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFEK 361
P + E+ +S G N++ + L L + L F+ S DS Y I+ K
Sbjct: 280 GAPFTQPLSSNEIFRSLPGSYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMYVINLHK 339
Query: 362 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
+ +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 ALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKML 398
Query: 422 KDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 SENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKR 458
Query: 480 LL 481
LL
Sbjct: 459 LL 460
>gi|410905693|ref|XP_003966326.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Takifugu rubripes]
Length = 536
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 114/485 (23%), Positives = 203/485 (41%), Gaps = 48/485 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ LLR G + + T + + VK L VL+Q N V F P
Sbjct: 12 LLREHFGEVVEKLGTHLLRSGSQNLRTILHETGMPRDLVKKVLCVLVQ-NGVCVFNHRGP 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
P T Y + IL +R+ +++ + +++ LL+ G +T+ K +
Sbjct: 71 GRP---TNYQANSNKILRILRYPRYIYTAKTLYGDTGELIIEELLQRGEMTMSRTVKTVA 127
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + KLV H+++RCP P+ + +++
Sbjct: 128 DRLTQNMEDGQCMDYSEVSSAFCKLVETHFLQRCP---PVAGAGKADSAAPATPATQAGA 184
Query: 189 KIGEPETIEQ--QVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 246
PE+ +V + + + R +V+ + +K K +D
Sbjct: 185 SAPTPESFPDCYRVPQVTIRGQGKRRLSSEDVDQTIAKKAK-----------------MD 227
Query: 247 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ----ATSSAEK 302
DE + ++ NFE F R + I V LD ++ ++ ML+ TS A
Sbjct: 228 PETHGDE-GIYWQVNFERFHLHFRDQAIISAVANKLDQTSSEIVRTMLRMSEVTTSPAAS 286
Query: 303 KVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YSID 358
K PLS + I+ + + LD LV + FV + +S + ++
Sbjct: 287 CTK-----PLSANEIFRSLPSTYNIARPILDQYLTLLVD-DPMEFVGRAGESGGGMFVVN 340
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
K++ +ES+V +R+G + RIFRLL + R LE ++ D V K+A +LY
Sbjct: 341 LHKVLANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMVPAKEAKDMLY 399
Query: 419 KLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
L + ++++ T A F L+ N+ + +L + NL R +E
Sbjct: 400 MLLSQNLVQLQEIPKTPDFAPSRTFYLYTCNQLPTARMLLQNCYKTVANLIERRLFESKE 459
Query: 477 EKELL 481
K LL
Sbjct: 460 SKRLL 464
>gi|355389073|gb|AER62479.1| hypothetical protein [Aegilops speltoides var. ligustica]
Length = 218
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Query: 159 VERCPASEPLLMPISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTN 217
VERCP +EP P + + AR+ K+A+++ ++EQ+VV A + RF +
Sbjct: 1 VERCPKAEPYFNPQEDXQSTGARRXVPKTAEEVL---SLEQKVVNTATLSDPERFFEIPY 57
Query: 218 VESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCI 275
+ D + +N G KRKH E+DE E V++R NFE FI L+ K C
Sbjct: 58 IMEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCA 117
Query: 276 DHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHV 335
D + L G + + +A + K NSV S++ I E++ + E G M++ +
Sbjct: 118 DRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDI 173
Query: 336 RASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDA 383
+ L+ +L + + ++ D K++E +NEE+ES V K+YG++A
Sbjct: 174 KPVLL---DLQCTTSDGEEFTFDLRKMVEACRNEEIESXVKKKYGQEA 218
>gi|58865732|ref|NP_001012081.1| DNA-directed RNA polymerase III subunit RPC3 [Rattus norvegicus]
gi|81883800|sp|Q5XIL3.1|RPC3_RAT RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|53733475|gb|AAH83667.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Rattus
norvegicus]
gi|149030569|gb|EDL85606.1| rCG51882 [Rattus norvegicus]
Length = 533
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 105/482 (21%), Positives = 211/482 (43%), Gaps = 46/482 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T+ S +QVK AL VLI N V +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVIYHVHK-- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + V+L H+V+RCP L+P ++ S
Sbjct: 127 DRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDTD--------SSDPGP 173
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 248
P + + +P + S++ G++ ++S+ GE + D
Sbjct: 174 PPPAPNLVINEKDMYLVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKKPRCTDNE 224
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
+ + ++ N + F + R + + V +D ++ ++ ML+ + ++ T +
Sbjct: 225 EPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTPS 279
Query: 309 SVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFEK 361
P + E+ +S G N++ + L L + L F+ + DS Y I+ K
Sbjct: 280 GAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGDSGGGMYVINLHK 339
Query: 362 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
+ +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 ALASLSTATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKML 398
Query: 422 KDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 SENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKR 458
Query: 480 LL 481
LL
Sbjct: 459 LL 460
>gi|410171283|ref|XP_003960212.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 4 [Homo sapiens]
Length = 411
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 98/429 (22%), Positives = 194/429 (45%), Gaps = 45/429 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
V+ + S++ G++ ++S+ GE K K D
Sbjct: 181 -----------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKYTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLME 429
+ ++ ++
Sbjct: 399 LSENFMSLQ 407
>gi|13325210|gb|AAH04424.1| POLR3C protein [Homo sapiens]
gi|325463117|gb|ADZ15329.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [synthetic
construct]
Length = 411
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/429 (22%), Positives = 194/429 (45%), Gaps = 45/429 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
V+ + S++ G++ ++S+ GE K K D
Sbjct: 181 -----------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKYTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 360
+S P + E+ +S G N++ + L L + L FV S DS Y I+
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLH 339
Query: 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 420
K + ++SVV +R+G RIFRL+ + + +E ++ D + K+A +LYK+
Sbjct: 340 KALASLATATLKSVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDMLYKM 398
Query: 421 WKDGYLLME 429
+ ++ ++
Sbjct: 399 LSENFMSLQ 407
>gi|355389037|gb|AER62461.1| hypothetical protein [Heteranthelium piliferum]
Length = 215
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 13/225 (5%)
Query: 161 RCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE 219
RCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPYFNPQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSM 57
Query: 220 SDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDH 277
D + N G KRKH E+DE E V++R NFE FI L+ K C +
Sbjct: 58 EDASKTNDCPQNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCAER 117
Query: 278 VRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRA 337
+ L G + + +A + K NSV S++ + E++ + E G M++ ++
Sbjct: 118 KKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGVLEKLGQKEGGALMSIGQIKP 173
Query: 338 SLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRD 382
L+ +L + + ++ D K++E +NEE+ES+V K+YG++
Sbjct: 174 VLL---DLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQE 215
>gi|303274164|ref|XP_003056405.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462489|gb|EEH59781.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 287
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 148/281 (52%), Gaps = 23/281 (8%)
Query: 257 VYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSS 316
++R NF F RR +HK C VR +DD ++L +L S E K + + + + +
Sbjct: 10 LWRINFVEFNRRFQHKACSATVRTKVDDETNHLLLLLLDILSPREVKDRGQ-AASIHQAD 68
Query: 317 IYEEVIKSEAGRNMTLDHVRASLVQL----GEL--SFVDA-SSDSYSIDFEKIIEIAQNE 369
I + KS ++ + L QL G+L F D ++YS+D + +++ + +
Sbjct: 69 ILPMICKSRKCSSIV---AKERLKQLCDSTGDLVSCFRDVQGGNNYSVDVNRTMQLIRTK 125
Query: 370 EVESVVSKRYGRDAYRIFR-LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428
E+E+++ +R+G A RIFR LL KS LE ++++ + KD ++LYKL K Y+ +
Sbjct: 126 EIEAIIRERFGVPACRIFRLLLLKSN--LEQKQVAELAMIPVKDTRELLYKLLKAEYVQI 183
Query: 429 EKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNL--- 483
+++ T A F LW+V+ ++V E+F NL R+ +EL RE+E L+L
Sbjct: 184 QEVSRTSDHAPSRTFFLWRVDLARAIENVERELFRTTSNLRSRLLHELARERETLSLLEC 243
Query: 484 PADKRTGPLQ--DRYN--RIRKVRILLESSQMKLDDAILLF 520
ADK T L R N R+R + LESS +LD+ + LF
Sbjct: 244 AADKVTVALTPGQRCNLARMRTIGTRLESSLQRLDELLPLF 284
>gi|389741288|gb|EIM82477.1| hypothetical protein STEHIDRAFT_171381 [Stereum hirsutum FP-91666
SS1]
Length = 552
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 128/514 (24%), Positives = 231/514 (44%), Gaps = 81/514 (15%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M E + V +I HFG L +KV LL +G L+ ++ R++ L V+ ++LVL+Q
Sbjct: 1 MADEDTARLCVQIIHTHFGPLTSKVASTLLTRGRLSFPHLVRFSSLKPRTVRASILVLVQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
N + ++ DG + V ++ L R+R+ +++ + Q F + ++VQ +L+HG
Sbjct: 61 HNLLWHAQSDD-DGE----VFEVNVEDCLTRLRYGRYVWLAEQLFGKAAADIVQLILDHG 115
Query: 121 RL----TLKQM--FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA------SEPL 168
+L + QM F AK S K + L LV++ Y++ A ++
Sbjct: 116 KLRPPDIISQMPIFLDAKESAK---------YTQALFTLVSSSYLKPATALSHQSTTDTR 166
Query: 169 LMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD---VGEK 225
L +EE+ A+ G +AK++ E ++V ++ L E E D +G K
Sbjct: 167 LKYFAEEK--AKVVGYPTAKQLREA----KEVADSRLKRE----------EEDAEKIGLK 210
Query: 226 EKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDG 285
K ++ V E + V +R N + F +R+K R +DG
Sbjct: 211 RKAREQGGRKSSKRQAVEE-----EVVDDDVFFRVNAQKFNIHIRNKLIESAARERFNDG 265
Query: 286 AANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAG-------------RNMTL 332
AA V+ A L+AT S +K V S ++++I + + + +
Sbjct: 266 AALVMRAALKATESKQKSVADVRSDSTTVATIAMHLSDEDVSTLSSTLITSSKSTSSSSS 325
Query: 333 DHVRASLVQ--LGELSFVD--------ASSDSYS-----IDFEKIIEIAQNEEVESVVSK 377
+L+Q LG LSF D AS S+S ++FE + + + +E+V +
Sbjct: 326 SKKTITLLQNFLGMLSFADNPTAAGRAASFVSFSGSKLFVEFETVGKRLRRRVLEAVTRE 385
Query: 378 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR 437
R+G D R+ RLL +G++ E +IS + KD +L + + + ++++ + R
Sbjct: 386 RHGEDGVRVLRLLMDTGKVDE-KQISKVAMMAPKDCRPLLSAMSAESLISIQEVPKSADR 444
Query: 438 QS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 469
F LW V++Q + +L ++ N+SLR
Sbjct: 445 NPTRTFYLWYVDQQKAYSVLLLNLYKTLYNISLR 478
>gi|409046168|gb|EKM55648.1| hypothetical protein PHACADRAFT_121372 [Phanerochaete carnosa
HHB-10118-sp]
Length = 541
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 127/509 (24%), Positives = 220/509 (43%), Gaps = 53/509 (10%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
+IT FG L AK LL +G L + R++ L + ++VL+Q N + T+
Sbjct: 12 QIITREFGPLTAKAAAVLLHRGRLPLAQIIRFSGLRPRTARTCVIVLVQHNVLWHAQTDT 71
Query: 72 PDGP--KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 129
DG + NT D L R+R+ ++ Q F + E+VQ +L++G+L +
Sbjct: 72 -DGEVLEFNT------DECLMRLRYGRYAWQAEQLFGKVGAEIVQLILDNGKLRRPDVIS 124
Query: 130 RAKSSEKEGNLVDLDSL-RETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
R + V SL + KLV A Y++ P++ +L S + + + AK
Sbjct: 125 RLSIYDP----VKAHSLYSQAFHKLVEASYLK--PST--VLSHQSPRDKRIQYGAEEKAK 176
Query: 189 KIGEPETIE-QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE 247
G P E +Q E A + + +E+ S+ + + + DV++ D
Sbjct: 177 LSGFPTAKELRQAKEVAEARLRREEEEAEKIGTKRKAREQRSHRLKKRKTTEEDVVDDD- 235
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
V +R N E F +R+K D VR +D AA V+ A L++T + + K+
Sbjct: 236 --------VYFRINCERFNIHVRNKIIEDAVRERYNDSAALVMRAALKSTEAKQLKLTDV 287
Query: 308 NSVPLSLSSIYEEVIKSE-AGRNMTLDHVRASLVQLGEL-----------------SFVD 349
S P SL++I + + E + + + + L + SFV
Sbjct: 288 RSDPTSLANIATHISEDEDLSIGLAIGKRPSQMAMLKDYCGILAAADNPTPAGKAASFVS 347
Query: 350 ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
+ ++FE I + +E+V +RYG D RI LL +G+L E +IS T +
Sbjct: 348 LNGSKVQVEFEIIDNRLRRRILEAVTRERYGDDGVRIISLLLSTGKLDEK-QISKTGMMA 406
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLS 467
KD +L + D + ++++ + R F LW V+ Q + ++ ++ N+
Sbjct: 407 PKDVRPLLSAMAADSLISLQEVPKSADRNPARTFFLWYVDLQKAYTVLVGSLYKTLYNVI 466
Query: 468 LRVSYELDREKELLN--LPADKRTGPLQD 494
R E +E+ LL L +RT +QD
Sbjct: 467 TRRKSE--QEEPLLKAVLEKRQRTDVMQD 493
>gi|427789313|gb|JAA60108.1| Putative polymerase rna iii dna directed polypeptide c
[Rhipicephalus pulchellus]
Length = 517
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 113/475 (23%), Positives = 214/475 (45%), Gaps = 44/475 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +HFG +V V E LL+ + + R T L ++K +L+VLI QN F
Sbjct: 12 ILKDHFGPVVQTVGEALLKVSWRSLGEIARATNLPLSKIKKSLMVLIHQNLAN-FEAH-- 68
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
P+ +Y + D +L VR+++++ + + +V+ +L +GRL + + K
Sbjct: 69 --PRGTVKYSINADRVLCLVRYSRYIYCTKLLYGEAGEFIVEEILLNGRLCMSSVLQ--K 124
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
E++ + ++E V LV ++ R P +P + PA K S +
Sbjct: 125 VLERQQGAGTAEGVKEKFVDLVKTGFLCRVPYPDP--------DAPASKIPS-----LIL 171
Query: 193 PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVAD 252
P+ + ++ E L + + S + E P +K K + + D+ D
Sbjct: 172 PDDVMYKIPEVKLYLLKQKLSAEASEEP-------------PAKKVKMEDPQGDK--QPD 216
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 312
E+ +R N + F + LR + ++ + + A V+ ML+ S K S P+
Sbjct: 217 EKE-YWRVNIDRFDQHLRDQLIVEALSKRMGAKAGEVVRTMLR-LSETRCNPKDAFSAPV 274
Query: 313 SLSSIYEEVIKSEAGRNMTLDHVRASLV---QLGELSFVDASSDSYSIDFEKIIEIAQNE 369
S S I++ + + LD SLV LG + D +S++ E + +
Sbjct: 275 SRSEIHQFLKRETTFSPQELDSY-LSLVADDALGLVRRTDERGGMFSVNLELALRLLAEG 333
Query: 370 EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429
+ S+V R+G + RIFRLL + + LE +I + + +DA ++ YK++++ ++L +
Sbjct: 334 VLASIVQDRFGAKSCRIFRLLLQK-KYLEQKQIEELAMITARDAKEMTYKMFEEKFVLAQ 392
Query: 430 KLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 482
+L T A L+ V+ L + VL+ + A N+ LR + + +K LL+
Sbjct: 393 ELPRTPDYAPSRMIYLFHVDIPQLSRQVLEWCYKAMSNMMLRRMHVTEEQKRLLD 447
>gi|390598265|gb|EIN07663.1| hypothetical protein PUNSTDRAFT_103720 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 541
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/488 (23%), Positives = 212/488 (43%), Gaps = 54/488 (11%)
Query: 7 TKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
T+ ++ +HFG L A V LL +G L + RYT L V+ ++LVL+Q N +
Sbjct: 7 TRLCTQIVHSHFGPLTANVASTLLTRGRLPLSTIIRYTGLKPRTVRASVLVLVQHNILWH 66
Query: 67 FTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 126
+E DG N + V D+ L R+RF +++ + + ++VQ +L+HG+L
Sbjct: 67 TVSE--DG---NEVFEVNVDDCLARLRFGRYVQQAEELLGKAARDIVQIILDHGKL---- 117
Query: 127 MFDRAKSSEKEGNLVDLDS-----LRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 181
+ +E L D+ + + LV++ Y++ + +L +S + +
Sbjct: 118 -----RQAEVLAYLAQYDTKAQSRYSQAMHNLVSSSYLK----ASTVLSHVSPRDKRIKY 168
Query: 182 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 241
+ + AK G P +Q+ EA EA R + +G K KRK
Sbjct: 169 EAEEKAKITGFPTA--KQLREAKELAEA-RLKRERDEAEKIGLKRVTKETGYKSSKRK-- 223
Query: 242 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAE 301
+ E V D+ V +R N E F +R+K V + AA V+ A L+ T + +
Sbjct: 224 --AVTEEDVVDDD-VYFRVNCERFNVHIRNKLIESAVLERFNQSAAAVIRATLKTTEAKQ 280
Query: 302 KKVKTKNSVPLSLSSIYEEVIKS---EAGRNMTLDHVRASLV----QLGEL--------- 345
V S P S+++I + + E+G + +S+ +G L
Sbjct: 281 MSVSDVRSDPTSVANISQCLADDDDLESGLVLNTSKTPSSIALIKHYIGVLSAADNPTPA 340
Query: 346 ----SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 401
SFV ++ ++FE I + +E+V +R+G + RI RLL +G++ E +
Sbjct: 341 GKASSFVSMTNSKVQVEFEIIARRLRRRILENVTRERHGDEGVRILRLLMDTGKMDEK-Q 399
Query: 402 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEM 459
+ + KD +L + D + ++++ + R F LW V+ + +++ +
Sbjct: 400 VGKIAMMAPKDVRPLLSAMATDSIITIQEVPRSADRNPTRTFYLWFVDVDKAYSNLIRSL 459
Query: 460 FHAALNLS 467
+ N+S
Sbjct: 460 YKTLYNIS 467
>gi|346468825|gb|AEO34257.1| hypothetical protein [Amblyomma maculatum]
Length = 516
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/481 (23%), Positives = 210/481 (43%), Gaps = 57/481 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V ECLL+ T + R T L ++K +LLVLI QN V+
Sbjct: 12 ILKEHFGAVVQSVGECLLKVTSRTLAEIARATNLPLSKIKKSLLVLIHQNFVEFHA---- 67
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----TLKQMF 128
P+ +Y + D +L +R+ +++ + +++ +L +GRL ++++
Sbjct: 68 -HPRGFAKYSIHADRVLCMLRYPRYIYCAKLLYGDAGEFIIEEVLLNGRLCMSAVIQKVL 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR +GN + +++ V LV +++ R P +P + + P +
Sbjct: 127 DRL-----QGN-STAEEVKQKFVDLVQTNFLVRVPYPDP---NVEGTKIPTLVLREEDVH 177
Query: 189 KIGEPE--TIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 246
KI + + ++Q EA+L A + E+ GEK+ P EK
Sbjct: 178 KIPQVKLYLMKQNYGEASLEPPAKKI----KTENLDGEKQ-------PDEKE-------- 218
Query: 247 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKT 306
+R NF+ F + LR + + V + A V+ ML+ S K
Sbjct: 219 ----------YWRVNFDRFHQHLRDQLVVQAVSKRMGSKAGEVVRTMLR-LSETRSHPKD 267
Query: 307 KNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV---DASSDSYSIDFEKII 363
SVP+S S I++ + K + LD SL+ L V D +S++ E+ +
Sbjct: 268 VFSVPVSRSEIHQALKKEINISSQELDSY-LSLIADDALLLVRRTDERGGMFSVNLERAV 326
Query: 364 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 423
+ + S+V R+G + RIFRLL + E +I + + +DA + YK++++
Sbjct: 327 RLLAEAVLTSIVQDRFGAKSCRIFRLLL-VKKYTEQKQIEELAMIPARDAKEWTYKMFEE 385
Query: 424 GYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+++ ++L T A L+ V+ L + VL+ + A NL R + K L+
Sbjct: 386 KFIMAQELPRTPDYAPSRMIYLFYVDIPQLSRRVLEWCYQALTNLVQRRDHITQEHKRLV 445
Query: 482 N 482
+
Sbjct: 446 D 446
>gi|392567127|gb|EIW60302.1| hypothetical protein TRAVEDRAFT_164994 [Trametes versicolor
FP-101664 SS1]
Length = 543
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 128/508 (25%), Positives = 219/508 (43%), Gaps = 65/508 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + FG L A V +L G L + R++++ V+ A+L+L+Q N + +E+
Sbjct: 13 IVRSVFGPLTATVTSIILTHGRLGLPQLLRFSKMKPRTVRAAILILVQHNLLWHSQSEE- 71
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----TLKQM- 127
+ + D L R+R+ +++ + Q + + E++Q +L+HG+L + Q+
Sbjct: 72 ----EGEVFEINIDECLMRLRYGRYVWLAEQLYGKSGGEIIQLVLDHGKLRPPDIIAQLS 127
Query: 128 -FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 186
+D K L +TL KLV Y++ P++ LL S E R +G +
Sbjct: 128 IYDPVKGPA---------LLTQTLHKLVDEAYLK--PST--LLSHFSPREKLIRYEGEEK 174
Query: 187 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 246
K G P ++V EA +A R + VG K K + KRK +E D
Sbjct: 175 RKIPGFPTA--REVREARETAQA-RLTREEEEAEQVGMKRKAKDYSHKASKRK--AIEED 229
Query: 247 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKT 306
V + V +R N E F +R+K ++ A VL A L+AT ++K+
Sbjct: 230 ---VEVDDGVYFRVNCERFNVHIRNKLIETAASERFNESAGTVLRATLKATEPRQRKLTD 286
Query: 307 KNSVPLSLSSIYEEVI------------KSEAGRNMTLDHVRASLVQLGEL--------- 345
S P S +++ + S+ MTL V+ L L
Sbjct: 287 VRSDPTSFANVAMHLPDDVDLASGLVLQSSKTPPTMTL--VKEYLGILASADNPTPAGRA 344
Query: 346 -SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISD 404
SFV ++FE I Q +ESV +R+G + RI RLL+ +G +++ +IS
Sbjct: 345 ASFVSLGGSKVQVEFEIIARRLQRRVLESVARERHGDEGVRIIRLLADTG-MMDEKQISK 403
Query: 405 TTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHA 462
+ KDA +L + + + ++++ + R F LW V+ Q L ++
Sbjct: 404 IGMMAAKDARPLLSAMSAESLVSLQEVPKSADRNPTRMFYLWYVDLQKASTVQLRSLYKT 463
Query: 463 ALNLSLRVSYELDREKELLNLPA--DKR 488
N++ R E+E NL A DKR
Sbjct: 464 LYNIATRRQA----EQEEPNLKAVLDKR 487
>gi|395333322|gb|EJF65699.1| hypothetical protein DICSQDRAFT_177158 [Dichomitus squalens
LYAD-421 SS1]
Length = 542
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 115/492 (23%), Positives = 217/492 (44%), Gaps = 58/492 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-QAFTTEQ 71
++ + FG L AKV LL G L + R+++L V+ ++LVL+Q N + A + ++
Sbjct: 13 IVRSVFGPLTAKVASLLLTHGRLGLSQLVRFSKLKPRIVRASVLVLVQHNLLWHAQSEDE 72
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL------TLK 125
+ + NT D L R+R+ +++ + Q + + E+VQ +L+HG+L +
Sbjct: 73 GEVFEINT------DECLMRLRYGRYVWLAEQVYGKAGAEIVQLILDHGKLRPPDIVSQL 126
Query: 126 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 185
++D K+ + +TL KLV A Y++ P++ ++ +S + R + +
Sbjct: 127 SIYDPIKAPA---------VISQTLHKLVEATYLK--PST--VISHLSPRDKRIRYETEE 173
Query: 186 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 245
K G P E + A + R +G K K + +++ +
Sbjct: 174 KRKISGFPTAKE---LRQAKEIADARLRREEEEAEQIGMKRKAKDQYKSSKRKAME---- 226
Query: 246 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 305
++ V DE V +R N E F +R+K ++ A VL A L+AT ++K+
Sbjct: 227 EDLEVDDE--VYFRVNCERFNVHIRNKLIEATAAERFNECTALVLRATLKATEPKQRKLS 284
Query: 306 TKNSVPLSLSSIYEEV---IKSEAGRNMTLDHVRASLVQLGEL----------------- 345
S P SL++I + + AG + +++ + E
Sbjct: 285 DVRSDPTSLANIAMHLPDDVDLSAGLVLQSSKKPSTMTLMKEYLGFLSSADNPTPAGRSA 344
Query: 346 SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 405
SFV S ++FE I + +E+V +R+G + RI RLL +G +++ +IS
Sbjct: 345 SFVSMSGSKVQVEFEIIARRLRRRVLEAVARERHGDEGVRIIRLLLDTG-MMDEKQISKV 403
Query: 406 TFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAA 463
+ KD +L + + + ++++ + R F LW V+ Q + +LD M+
Sbjct: 404 GMMAPKDVRPLLSSMSAESLVSLQEVPKSADRNPTRMFYLWYVDLQKAYNVLLDNMYKTL 463
Query: 464 LNLSLRVSYELD 475
N++ R E D
Sbjct: 464 FNITARRQAEQD 475
>gi|449268623|gb|EMC79476.1| DNA-directed RNA polymerase III subunit RPC3 [Columba livia]
Length = 533
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 119/488 (24%), Positives = 205/488 (42%), Gaps = 58/488 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ LLR G + + T L +QVK AL VLIQ N T +P
Sbjct: 12 LLHEHFGEIVEKIGTQLLRAGGQALRGIAGGTGLLLDQVKKALCVLIQHN----LATFRP 67
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y IL +R+ +++ + +V+ LL +G+LT+ +++
Sbjct: 68 R--RGGVEYEAQCGRILRILRYPRYIYTAKTLYGDTGELIVEELLLNGQLTMSAVVRKVA 125
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+LV H+V+RCP L+P EGP +
Sbjct: 126 DRLTETMEDGKTMDYADVSSTFVRLVDTHFVQRCP-----LVP----EGPQSPEVPPPPA 176
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 248
+ V R S+V K + S GE R + +
Sbjct: 177 PTLLSSDKDMYTVP--------RLSLVGK------GKRRRSCEEEDGEPRAK---KQKQE 219
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
G + E + + + F + R + + V +D ++ ++ ML+ + +V T +
Sbjct: 220 GESSEVPGRLKPHIDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EVTTSS 274
Query: 309 SVPLSLSSIYEEVIKS-EAGRNM---TLDHVRASLVQLGELSFVDASSDS----YSID-- 358
P + E+ +S AG N+ LD A L L FV S DS Y++
Sbjct: 275 GAPYTQPLSSNEIFRSLPAGYNIVKQVLDQYLALLAD-DPLEFVGKSGDSGGGMYTVSIF 333
Query: 359 ---FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 415
F K +R+G RIFRLL + + LE ++ D + K+A +
Sbjct: 334 WGRFFKTFAPFPLHVTGVPAPRRFGSRCARIFRLLLRK-KHLEQKQVEDFAMIPAKEAKE 392
Query: 416 ILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
+LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 393 MLYKMLSESFVSLQEIPKTPDHAPSRTFYLYTVNVPAAARMLLHRCYKSVANLMERRQFE 452
Query: 474 LDREKELL 481
K LL
Sbjct: 453 TKENKRLL 460
>gi|2228748|gb|AAB63675.1| RNA polymerase III subunit [Homo sapiens]
Length = 533
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 111/495 (22%), Positives = 218/495 (44%), Gaps = 50/495 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L VR+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRIVRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T +L H+V+ P+ +P +E
Sbjct: 116 LTMCTVVKKVADRLTETMEDGKTMDYXEVSNTFXRLADTHFVQXXPS-----VPTTENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 171 PGPPPPAPTLV-INEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 238 RKHD--VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 295
+ D +L++ + R N + F + R + + V +D ++ ++ ML+
Sbjct: 214 KARDQNILQITRXPF-QMMGFIGRPNLDRFRQHFRDQAIVSAVANRMDQTSSEIVRTMLR 272
Query: 296 ATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASS 352
+ ++ T +S P + E+ +S G N++ + L L + L FV S
Sbjct: 273 MS-----EITTSSSAPFTQPLFSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSG 327
Query: 353 DS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 408
DS Y I+ K + +ESVV +R+G RI RL+ + + +E ++ D +
Sbjct: 328 DSGGGMYVINLHKALRSLATATLESVVQERFGSRCARICRLVLQK-KHIEQKQVEDFAMI 386
Query: 409 EKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNL 466
++A +LYK+ ++ ++++ T A F L+ VN + + D + + NL
Sbjct: 387 -LQEAKDMLYKMLSGNFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLFDRCYKSIANL 445
Query: 467 SLRVSYELDREKELL 481
R +E K LL
Sbjct: 446 IERRQFETKENKRLL 460
>gi|440792790|gb|ELR13998.1| RNA polymerase III subunit RPC82 helixturn-helix domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 328
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 141/327 (43%), Gaps = 32/327 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++T HFGD++ KV LL + L ++ TEL QVKN+LLVLIQ N V +F E P
Sbjct: 10 IVTEHFGDVIGKVAGALLTRDRLLMHELESITELEFLQVKNSLLVLIQHNLV-SFIEEHP 68
Query: 73 DGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 130
+G + Q Y IL R+RF +FL + F + +VQ LLEHGRLT +
Sbjct: 69 EGNPQDVQTYYQASVSFILWRLRFPRFLQVAKHRFGDEGRLMVQVLLEHGRLTHDLILQH 128
Query: 131 AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISEEEGPARKKGSKSA 187
A + + L +L+ +V R P + P P IS + ARK +
Sbjct: 129 AAQA------AGFELADTMLTELIRQRFVVRVPEA-PGPQPAVDISTQLNAARKAKPGAG 181
Query: 188 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGE---KEKNSNNVTPGEKRKHDVLE 244
E + + MR S ++N+ E K++ S + K ++
Sbjct: 182 GDEDEDDGV------------GMR-SGLSNLSEGYREAKPKKRKSKGAPKDPQPKRQNID 228
Query: 245 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 304
+ D V + N E F RH+ I V +D A L M + +
Sbjct: 229 PLSGRITD---VYWCINPERFNMHFRHEAIIKMVEEKVDATAGIYLRVMFKMIEPYIHSL 285
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMT 331
+SV +S + +++E+ K + ++T
Sbjct: 286 SDHDSVSVSTTELWQELKKEYSSEDIT 312
>gi|393245739|gb|EJD53249.1| hypothetical protein AURDEDRAFT_180799 [Auricularia delicata
TFB-10046 SS5]
Length = 547
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 133/547 (24%), Positives = 233/547 (42%), Gaps = 76/547 (13%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-QA 66
K V +I HFG L A++ LL +G L+ + R L + V+ A+LVL+Q N + A
Sbjct: 8 KLCVQIIHEHFGPLTAQIAAVLLHRGRLSMPQLARELGLKSQTVRAAVLVLVQHNILWHA 67
Query: 67 FTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 126
T ++ + + N D + R+RF ++++ + F Q+ E+V LL+HG+L L
Sbjct: 68 ETDDRTEVMEIN------IDECIARLRFGHYMSLAREIFGQEASEIVAILLDHGKLRLPD 121
Query: 127 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER-------CPASEPLLMPISEEEGPA 179
+ R S+ + V + + KL+++ +++ CP + L+ +E
Sbjct: 122 ILSRLLVSKPKEQAV----YTQMVHKLISSTHLKPSTVLSHICPRDK--LINYEADELKK 175
Query: 180 RKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 239
+K SAK I E A + R +G K K ++ G K
Sbjct: 176 KKTAIISAKDIRE-----------AKDLAVARLRKEEEEAEKIGFKRKAKEALS-GRASK 223
Query: 240 HDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA--- 296
++E D V DE V +R N F ++R+ + +D AA V+ A L+A
Sbjct: 224 KQIVEED---VIDED-VYFRVNHSKFNVQIRNNLIVAAAAERYNDAAAVVICATLKAAEA 279
Query: 297 ----TSSAEKKVKTKN---SVP----LSLSSIYEEVIKSEAGRNMTLDHVRASLVQ--LG 343
T + V T N S+P L+ Y S+A + + A+LV+ +G
Sbjct: 280 KSSLTDLRSEAVTTNNIMSSIPENHELASGLSYTSSKSSKAPKAPST----ANLVKEFIG 335
Query: 344 ELSFVD---------------ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 388
LS D +S+ ++++ I + +E+VV +R+G D RI R
Sbjct: 336 ILSAADNPTPAGVAGSFLSTSSSAGKVQVEYDIIHRRLRRRVLEAVVRERFGDDGVRIIR 395
Query: 389 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKV 446
+L +G+ ++ I+ KD +L + G + M+++ + R F LW V
Sbjct: 396 ILLATGK-MDDKHIAKVAMKPPKDVRTVLAGMSSAGIIAMQEVPKSADRAPIRTFYLWHV 454
Query: 447 NRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK-RTGPLQDRYNRIRKVRIL 505
+ + +L ++ N+ +R E + + L+ DK G L+D R R +
Sbjct: 455 DLPKTYAVLLRNLYKTLFNIQMRKRAE-EEDNALIRGILDKCERGGLRDESQLTRPEREM 513
Query: 506 LESSQMK 512
L Q K
Sbjct: 514 LADWQEK 520
>gi|392596049|gb|EIW85372.1| hypothetical protein CONPUDRAFT_118168 [Coniophora puteana
RWD-64-598 SS2]
Length = 538
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 214/493 (43%), Gaps = 56/493 (11%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDE--QVKNALLVLIQQNCVQ 65
K V +I +HFG L A + LL +G L+ + R+T+ S + V A+L LIQ N +
Sbjct: 8 KLCVQIIDSHFGPLTASLVSTLLARGRLSLPQLIRFTDPSPKPRSVHAAVLSLIQHNLLW 67
Query: 66 AFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK 125
D V F+ + R+RF +F+ + F E+VQ +L+HG++
Sbjct: 68 HSVD---DAGGQEMLEVNTFECFM-RLRFGRFVALADDLFGSAGTEIVQLVLDHGKVRPP 123
Query: 126 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS--------EPLLMPISEEEG 177
+ S +G+ + + ++TL KLV Y++ P++ + L+ +EE
Sbjct: 124 DII----SQLSQGDKKNTSAYKQTLHKLVDRSYLK--PSTVLSHQSPHDKLIAYDAEERR 177
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
R G +AK++ E ++ EA L E VG K K +N+T
Sbjct: 178 --RIAGFPTAKQLREA----RETAEARLKRE-------EEEAERVGFKRKAKDNITQRSS 224
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
++ V DE + D+ V +R N++ F +R++ VR ++ AA V+ A L++T
Sbjct: 225 KRKAV---DEDALDDD--VYFRVNYDKFNIHIRNQLIETLVRERFNESAACVVHATLKST 279
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEV---------IKSEAGRNMTLDHVRASLVQL------ 342
+K + S P S +SI + + S + ++ + L +
Sbjct: 280 ELKQKSMTDVRSDPTSTASIAMHIPDDAPLSAGLASSSKKSNPASLAKEFLTLMSSSANP 339
Query: 343 GELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 402
SFV + ++FE I + +E V +++ + RI RLL G++ E +I
Sbjct: 340 SAASFVSMGENKVYVEFETISRRMKRHVLEEVTREKHKDEGVRILRLLLDVGKMDEK-QI 398
Query: 403 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMF 460
+ + KD +L L D + +++ + R F LW V+ + +L ++
Sbjct: 399 AKVAMLPSKDLRPLLSALSSDFIISTQEVPRSADRNPTRTFYLWYVDLNRAYTSILRSLY 458
Query: 461 HAALNLSLRVSYE 473
N+ LR S E
Sbjct: 459 KTLFNIGLRRSAE 471
>gi|302690682|ref|XP_003035020.1| hypothetical protein SCHCODRAFT_14169 [Schizophyllum commune H4-8]
gi|300108716|gb|EFJ00118.1| hypothetical protein SCHCODRAFT_14169 [Schizophyllum commune H4-8]
Length = 517
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 121/500 (24%), Positives = 211/500 (42%), Gaps = 72/500 (14%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
+I +HFG L AKV + LL +G L + R T L V+ A LVL+Q N V + +
Sbjct: 11 AQIINSHFGPLTAKVADALLTRGRLPVPQIVRATGLRPRTVRAACLVLLQHN-VLWYALD 69
Query: 71 QPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 130
DG + + + R+RF + + Q F Q ++VQ +L+HG+L + ++
Sbjct: 70 PIDGEVLE----ISPEECMLRLRFGRAVWQAGQLFGQAGSDIVQLVLDHGKLRPPHIVEQ 125
Query: 131 -AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
+ SS KE +L R+TL KLVT Y++ P+ K S +
Sbjct: 126 LSLSSPKETSL-----HRQTLHKLVTLAYLK-----------------PSTPKRHLSPRD 163
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
+E++ A P E + +R+ D E CG
Sbjct: 164 KAIKYELEEKAKIAGFPT--------------AKELREAKEAAVARLRREED--EDAACG 207
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 309
+ DE V +R NF+ F +R++ R ++GAA V+ A+L+AT S + + + S
Sbjct: 208 L-DE--VYFRVNFDKFNTHIRNQLIEKAARERFNEGAAAVMRAVLKATESTQTSLTEERS 264
Query: 310 VPLSLSSIYEEVIK------------SEAGRNMTLDHVRASL------VQLGELSFVDAS 351
+S+ +I + + S+A ++ H L G S +
Sbjct: 265 DAVSIGNIILNIPEDADLASGLAISASKASKSTCTKHYLHLLACADNPTPTGRASAFLSY 324
Query: 352 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK-ISDTTFVEK 410
+F I + +E+ +++G + R+ RLL SG+ + DK ++ +
Sbjct: 325 GSKIQAEFGLIGRRLRRHVLEASAREKHGPNGLRVVRLLLGSGK--QDDKQVAHGVMLPA 382
Query: 411 KDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSL 468
KD +L L D + +++ T R F LW V++ + +L E++ N+ +
Sbjct: 383 KDVRTVLAALAADSLVSTQEVPKTADRNPTRTFYLWHVDQTKAYTVLLGELYKTLYNIGV 442
Query: 469 RVSYELDREKELLNLPADKR 488
R E RE+ ++ +KR
Sbjct: 443 RRQAE--REEPMVRAVLEKR 460
>gi|388580679|gb|EIM20992.1| hypothetical protein WALSEDRAFT_39160 [Wallemia sebi CBS 633.66]
Length = 554
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 119/493 (24%), Positives = 219/493 (44%), Gaps = 81/493 (16%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+T+ ++ ++ N FG +VAKV + +L G L + RY E+ +QV+ ALL+LIQ
Sbjct: 1 MVTKEASRLCGIILENDFGAVVAKVGQTVLEYGRLPLPLISRYAEIKAKQVRAALLILIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTI----LSQEFDQQCV-ELVQG 115
NC+ T+ + + N D IL R+RF +++ + + +C E++
Sbjct: 61 HNCMWHCQTDNDEFFETNA------DEILARIRFGRYIRYAIDSYKDKLESRCAGEMITT 114
Query: 116 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLV-TAHYVERCP-----ASEPLL 169
+L +G+L +F+R + +D ++++ LV+ + TA + + P + L
Sbjct: 115 VLLNGKLRSGDIFERMPAD------IDETTMKKVLVQFLNTAAFTKSTPIMHVSPRDKTL 168
Query: 170 MPISEEEGPARKK----GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK 225
+ E + KK G K KKI E + Q + L +E R V+ + + G K
Sbjct: 169 LYEKEIKDTTYKKSDILGPKDIKKIKE---LAQARLLQELQVE--RGEVLED-GTRAGMK 222
Query: 226 EKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDG 285
K S++ KR DV+ DE + +R N+E + RLR++ ++
Sbjct: 223 RKKSSS-----KRGEDVITFDE-------NAYFRVNYEHYNVRLRNRLIAAEAAKRWNEQ 270
Query: 286 AANVLSAMLQATSSAEKKVKTKNSVPLSLSSIY-----------EEVIKSE---AGRNMT 331
+ ++ A L+AT K T+N V ++S + E +K + +
Sbjct: 271 SGFIMEAFLRATEETRK--DTQNHVHDTISELVAIHQVAKYIPQENTLKKGIVLSNKENN 328
Query: 332 LDHVRASLVQLGELSFVD---------------ASSDSYSIDFEKIIEIAQNEEVESVVS 376
+ + A Q+ LS D SS Y + +E + + V+S+V
Sbjct: 329 VQKLVAEYCQI--LSSQDFPGPAGASTRFLQKAGSSKEYHVCYETVCARIKRSLVDSLVK 386
Query: 377 KRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA 436
+++G +A RI ++ + G+ LE IS + K+ + + KL G L ++++ +
Sbjct: 387 EQFGDEAARIINIVLEKGK-LEEKHISTIGLLSMKETRETIGKLQTSGLLQLQEVPKSAD 445
Query: 437 R--QSQFLLWKVN 447
R F LW V+
Sbjct: 446 RAVHRTFYLWYVD 458
>gi|321455740|gb|EFX66865.1| hypothetical protein DAPPUDRAFT_218866 [Daphnia pulex]
Length = 518
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 105/481 (21%), Positives = 222/481 (46%), Gaps = 63/481 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +++G++V +V LLR+G ++ T LS +VK AL V+IQ N V+ +E+
Sbjct: 16 LLNHYYGEIVGQVGSYLLRRGNRMLNDIPTATGLSIREVKKALAVMIQHNLVKFQASERN 75
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ +Y ++ N+ +R+ K+L ++ + + L++ LL G+ + + +
Sbjct: 76 NNV---AEYTMIHHNVYCLIRYPKYLYMIKRIYGTSEEILLEILLNLGQASASNVIFHSA 132
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
+ E N++ +L ++ +L +++ RCP K +++A +
Sbjct: 133 NRLNEANVLSPSALHQSFQRLAQDNFIIRCP------------------KLAENATLLKV 174
Query: 193 PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVAD 252
P T+E + E +F+V NVE + P + + + + G
Sbjct: 175 P-TLEIE--------EKEKFAV-PNVE------------IEPIARMLKE--KATQLGGHC 210
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ---ATSSAEKKVKTKNS 309
+ +++R N E F LR+ ++ +D A + +L+ +S+ + V T
Sbjct: 211 DSEIIWRVNHERFDIELRNVILVNAAARRVDTTAGELYHLILKLWRESSNPDSPVTT--- 267
Query: 310 VPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--FVDASSDS----YSIDFEKII 363
P+S + I + V K+++ + L+H L L E S +D + D+ +++D+ K+
Sbjct: 268 -PVSYNVIKDAVRKNDSSP-ILLEHFDHYLRVLYEDSAGLIDRAGDAGGGQFNLDYSKVF 325
Query: 364 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 423
E ++S+V +R+G A R+FR L++ + +E D++ + + K+A YKL +
Sbjct: 326 ENLACASLDSIVLERFGSKALRLFR-LTRIQKFMEQDQMQNVAMIPAKEAKMFTYKLLEH 384
Query: 424 GYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL 480
+L +++L A F+L+ V + + L+ + N +R ++L + L
Sbjct: 385 NFLQIKELKKGTSNFAPVKSFILYHVELPQVVRTTLEASYKGLFNAMVRQMHDLTENQRL 444
Query: 481 L 481
L
Sbjct: 445 L 445
>gi|291241158|ref|XP_002740482.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide C
(62kD)-like [Saccoglossus kowalevskii]
Length = 530
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 104/485 (21%), Positives = 208/485 (42%), Gaps = 61/485 (12%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPK 76
++G++V KV L++ G + + T L +QV+ AL VLI N + +T+ +
Sbjct: 16 NYGEIVEKVGSYLIKYGLKALRAIALDTNLKLDQVRKALCVLITHNMAKFTSTK-----R 70
Query: 77 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEK 136
Y V +L R+ +++ + + +V+ +L++G+L + ++ +
Sbjct: 71 GIIYYQVSVKTVLLLSRYPRYIYSVKTLYGDAGELIVEEILQNGQLLMSKVVRKVTERLN 130
Query: 137 EG---NLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEP 193
E V+ +R+ + LV+ H+++R + P
Sbjct: 131 EALEDRTVEESFVRDKFIDLVSTHFLQRV---------------------------VNPP 163
Query: 194 ETIEQQVVEAALPMEA---MRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGV 250
I+ V E+ +E + +E + K + S + G KR + D
Sbjct: 164 SDIDSTVTESETAIEEEDLYKIPEAMKIEGCISRKRRRSEDEDRGTKR----IRTDSTAS 219
Query: 251 AD------EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT--SSAEK 302
D + V + NF+ F + LR + ID V +D + ++ ML+ + ++ K
Sbjct: 220 EDPSESFPDDGVYWHTNFDRFHQHLRDQAIIDAVSRRVDKVSREIVRTMLRMSELTTDPK 279
Query: 303 KVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YSID 358
TK P+S I+ + + TLD L+ ++ F++ + +S Y I+
Sbjct: 280 ATLTK---PMSSHEIFHALSRELNIPRPTLDQY-LKLLADDQIDFINKTGESGGGIYVIN 335
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
K I+ +ESVV +R+G YRIFRLL LE ++ + + K+A ++LY
Sbjct: 336 IYKAIKSLCIAHIESVVQERFGSKCYRIFRLLLLKQH-LEQKQVEEFAMIPAKEAKELLY 394
Query: 419 KLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
+++ + ++ ++++ T A F L+ VN + + +L+ + NL R ++
Sbjct: 395 QMFSEHFVSVQEIPRTPDHAPSRTFYLFSVNLNQVCRMLLERCYKTNANLIARREHDTYE 454
Query: 477 EKELL 481
+ LL
Sbjct: 455 NRRLL 459
>gi|428185684|gb|EKX54536.1| DNA-directed RNA polymerase III subunit RPC3 [Guillardia theta
CCMP2712]
Length = 531
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 115/504 (22%), Positives = 210/504 (41%), Gaps = 85/504 (16%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A+ V+ +HFG VC L+R+ T + ++ TEL ++N LLVLIQ N V + T
Sbjct: 16 ALQVVKDHFGAASESVCAALIRRSQRTLKELQADTELGSAALRNNLLVLIQHNLV-SVTV 74
Query: 70 EQPDGPKANTQYVVLFDNILHRVRFAKFLTIL----SQEFDQQCVELVQGLLEHGRLTLK 125
+ + +Y + R+R+ KF T + S E + ++++ +LEHGR ++
Sbjct: 75 DSTSAAR-ECRYHFEVEEASLRLRYPKFCTHIKSQASMEHARVASQVMEAILEHGRASMA 133
Query: 126 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV-------ERCPASEPLLMPISEEEGP 178
Q+ + K ++E + D L + L+ Y+ ER L P ++ G
Sbjct: 134 QIIEHCKYGDEE---ISEDKLVKAGNLLIQEKYIVRAQSNMERADTPAVLFSPTQKKTGK 190
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
RK GS ++ E + ++ A +P+ + D KE
Sbjct: 191 -RKAGSAGEER--ESKLVKLDNGAAGIPL-----------KEDGALKES----------- 225
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
D + +R N F+ R + A+++ +L
Sbjct: 226 ------------IDNEGSTWRVNTPAFLWDFRTAAIAQLMEDRFGPQTASLMRLLL---- 269
Query: 299 SAEKKVKTKNSVPLSLSSIY------EEVIKSEAGRNMTLDHVRASLVQLGELSFV---- 348
+ ++ + P +L++ + + ++ + GRN L+ VR V +LS +
Sbjct: 270 ---RTIRNRALQPANLANGFIPSASVDAMLDASEGRNEDLNVVRTWEVLSEQLSALCQDP 326
Query: 349 -----------DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 397
+ ++ D ++ + + +ES+V K++ RIFRLL + + L
Sbjct: 327 AFKSVTKLMGGGSEGSTFKPDISLLMMELRQQILESIVEKKFTARGRRIFRLLLER-KYL 385
Query: 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHV 455
E+ + D + V KKDA IL K+ K ++ ++++ T +Q F LW V+ + V
Sbjct: 386 ESKTVWDLSMVPKKDANDILCKMLKAQFVRLQEVPRTIDHNTQRTFFLWYVDLPKVCSIV 445
Query: 456 LDEMFHAALNLSLRVSYELDREKE 479
DEM+ +N L E RE E
Sbjct: 446 EDEMYR-TINFLLLKREEKKRECE 468
>gi|355389029|gb|AER62457.1| hypothetical protein [Aegilops longissima]
Length = 153
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 237 KRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
+RKH E+DE E V++R NFE FI L+ K C D + L G + +
Sbjct: 1 QRKHRAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFF 60
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 354
+A + K NSV S + I E++ + E MT+ ++ L+ +L + +
Sbjct: 61 EANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLL---DLQCTTSDGEE 113
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
++ D K++E NEE+ES+V K+YG++A+ IFRLL G
Sbjct: 114 FTFDLRKMVEACXNEEIESLVKKKYGQEAFTIFRLLVTQG 153
>gi|449667076|ref|XP_002165558.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Hydra
magnipapillata]
Length = 611
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 116/484 (23%), Positives = 208/484 (42%), Gaps = 79/484 (16%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A+ +I +HFGD+ +V LL+ G + +++ ++S ++VK L++LIQ N V +F
Sbjct: 125 ALQIINDHFGDISEQVVAYLLQNGQRSLKDICDNVKISKDEVKKVLVILIQHNLV-SFNK 183
Query: 70 EQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----K 125
+ T+Y NI+ R F +++ I + +++ LL +G TL K
Sbjct: 184 YK----NKFTEYHTELHNIIRRRSFQRYIYIAKLKHGDIGELIIEKLLLNGCDTLSKVAK 239
Query: 126 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 185
++ +R + + E D + + L++AHY+ R L P K+G K
Sbjct: 240 RVTERLEVDDPEEQRPDQSVVIKKCSDLISAHYLMRYKC---LQYP---------KEGKK 287
Query: 186 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT-PGEKRKHDVLE 244
K I P + F VG+K K P K++ E
Sbjct: 288 ETKDIN--------------PNDVFLFP------QGVGKKRKAQTKTDEPMSKKRKIDSE 327
Query: 245 LDECGVADEQ----SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 300
DE +EQ V + NFE R D + A+++
Sbjct: 328 KDEEAGENEQYEDDGVYWYVNFE---------------RLDQDFNDQLITRAVVERIDQL 372
Query: 301 EKKVKTKNSVP-LSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDF 359
KK+ S P L +Y+ + ++ D V + +A+ YS++
Sbjct: 373 IKKLP---STPRLDQQEVYQYL-------SLLSDEKTGGFVSKTD----EAAGGMYSVNI 418
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
+ +E+ ++V +R+G A R+FRLL + RLLE +I + + KD ++LYK
Sbjct: 419 QTSLEMICESVCSTIVMERFGSKACRVFRLLIQK-RLLEQKQIGELAMIPFKDVKELLYK 477
Query: 420 LWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 477
L+++ +L ++++ T A F L+ V+ + + +L+ + A NL LR +E++
Sbjct: 478 LFEESFLTIQEVSKTKDYAPSRSFYLFGVDMPQVSRLLLNRSYQAMGNLMLRRKFEMEEN 537
Query: 478 KELL 481
K LL
Sbjct: 538 KRLL 541
>gi|403412256|emb|CCL98956.1| predicted protein [Fibroporia radiculosa]
Length = 519
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 126/550 (22%), Positives = 236/550 (42%), Gaps = 90/550 (16%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I +HFG L A V LL +G L ++ R++ L V+ A+LVL+Q N + ++
Sbjct: 13 IIRSHFGSLTAIVASVLLTRGRLPLSHLIRFSGLKPRTVRAAILVLVQHNLLWHAQSDD- 71
Query: 73 DGPKANTQYVVLFDNI---LHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 129
DG VL NI L R+RF +++ Q F + +++Q +L+HG++ +
Sbjct: 72 DGE-------VLEVNITECLLRLRFGRYVHQAEQLFGKAGADIIQLILDHGKMRPPDLIS 124
Query: 130 RAKSSEKEGNLVDLDSL-RETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
R + V+ ++ + L KL+ + Y++ P++ LL S + + + + AK
Sbjct: 125 RLSVYDP----VEAPAMYSQMLRKLIGSSYLK--PST--LLSHFSPRDKRIKYEAEEKAK 176
Query: 189 KIGEPETIE-QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE 247
G P E +Q E A ++ + +E+ + +DE
Sbjct: 177 ISGFPTAKELRQAKETA--------------QARLKREEEAPEQTS-----------MDE 211
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA-HLDDGAANVLSAMLQATSSAEKKVKT 306
+R N E F +R+ I+H ++ VL A+L++T + +K++
Sbjct: 212 T--------YFRINCEKFNIHIRN-NLIEHAAVERFNETTGLVLRAVLKSTEAKQKQLAD 262
Query: 307 KNSVPLSLSSI---YEEVIKSEAGRNMTLDH--VRASLVQ--LGEL-------------S 346
S P S++++ E + G + L A+L++ LG L S
Sbjct: 263 TRSDPTSIANVAMQLPEEVDLSTGLILQLSKKPSAAALIKDYLGLLASADNPTPAGRAAS 322
Query: 347 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
FV + ++F+ I Q +E++ +R+G D RI RLL +G++ E +IS
Sbjct: 323 FVSMNGSKVQVEFDIIARRLQRRVLEAITRERHGDDGVRIVRLLLDTGKMDEK-QISKIG 381
Query: 407 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAAL 464
+ KD +L L D + ++++ + R F LW V+ Q +LD ++
Sbjct: 382 MMANKDVRPLLSALSADSLISLQEVPKSADRNPTRTFYLWYVDLQKARSVLLDNLYKTLY 441
Query: 465 NLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKV-----------RILLESSQMKL 513
N+ R E + L +R+ QD + ++ R L +M++
Sbjct: 442 NILFRKQAEEEESNVKAVLEKRQRSDVSQDEERLLTRIERETLVDWEKRRDKLTVLEMRI 501
Query: 514 DDAILLFHDF 523
++A+ + HD
Sbjct: 502 EEAVFIIHDL 511
>gi|321259559|ref|XP_003194500.1| hypothetical protein CGB_E6680C [Cryptococcus gattii WM276]
gi|317460971|gb|ADV22713.1| Hypothetical protein CGB_E6680C [Cryptococcus gattii WM276]
Length = 584
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 112/512 (21%), Positives = 226/512 (44%), Gaps = 59/512 (11%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ + FGD+V++V LL +G L + R + LS ALL+L+Q N VQ+
Sbjct: 14 QIVAHSFGDVVSRVASTLLNRGRLPAPTIARLSGLSPSVASAALLILMQHNLVQSNGASV 73
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
+ + + QY + + L R+R+ K L I + D +++V+ L+ G+L + +
Sbjct: 74 KETGE-DEQYEFIVEECLLRLRWGKMLAITHERVDFLSMQVVKQLMIFGKLRVPDII--- 129
Query: 132 KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK------ 185
+ + + + +++ +++ L+ H+++ + P L + ++ R SK
Sbjct: 130 SALGGDTDAIRAEAITGSVIALLQNHFLQ---TTAPELQILESDQIARRFAASKRRLAQA 186
Query: 186 SAKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGEKRKHDVL 243
+ I +EAA + M S+ VT V + +KN+ G+ +
Sbjct: 187 QGSALLSANDINNCHLEAAHDVRTMNESLRAVTRVLITKPKVDKNAKRRKTGKAVEESDY 246
Query: 244 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT---SSA 300
EL +Q V R N++ + +R+ + + GA V+ A+L A+ +S
Sbjct: 247 EL-------KQDVHLRLNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLRDTSL 299
Query: 301 EKKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASLVQL-------- 342
K +T + P+ ++SI + S A ++ D VRA L L
Sbjct: 300 LKDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRAYLSVLAGEDQLTG 357
Query: 343 -GELSFVD---ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLE 398
G +F+ +++ Y ++FE + + + +V ++ G A R+ ++++S + E
Sbjct: 358 SGAGAFLQREGSTNPGYKVEFEAVCVKMREAMLSDLVREKLGDKAARVLAVVTRSSKAFE 417
Query: 399 TDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFLLWKVNRQ 449
T I D + KDA IL +L K + +++ T A+ +++ LW V+
Sbjct: 418 T-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWAVDLS 476
Query: 450 ILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ +L ++ N+ R E+D++K +L
Sbjct: 477 RCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|402218291|gb|EJT98368.1| hypothetical protein DACRYDRAFT_57600 [Dacryopinax sp. DJM-731 SS1]
Length = 568
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 119/511 (23%), Positives = 205/511 (40%), Gaps = 77/511 (15%)
Query: 7 TKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
T V ++ FG ++ LL +G L + R T L V+ L+VLIQ N V
Sbjct: 7 THLCVQILQTFFGGPCYEIGRVLLSRGRLPLPLIARLTRLKPRTVRACLIVLIQHNVVWF 66
Query: 67 FTTEQPDG--PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 124
++ DG P+ +T Y V + + R+RF KF+ I + F + ++V+ +L+HG+L L
Sbjct: 67 AESDGEDGEGPRGDTFYEVNVEEVCMRLRFGKFVEIAADVFGDEAKDIVRCILDHGKLRL 126
Query: 125 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 184
+ D + + + + S R T LVT+ Y LMP S R +
Sbjct: 127 PAVLDLLEVNAPKSTI----SHRSTFHALVTSRY----------LMPTS------RLLHT 166
Query: 185 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDV-GEKEKNSNN-----VTPGEKR 238
KI E IE++ ++ + +R S+ VE + E+E + +T G K
Sbjct: 167 SPKDKIIAWEEIEKRKLKEIPSAKVLR-SIRDGVEDRLRTEREGQTTGLKRKPITTGGKG 225
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
+ DE ++ V +R N+E F LR + V+SA+L+A
Sbjct: 226 RKKPRRDDEDEEVVDEDVWFRVNYERFNVHLRDTLLATGAAERYNPSFGAVMSALLEAAM 285
Query: 299 S---AEKKVKTKNSVPLSLSSIYEEV-IKSEAGRNMTLDHVRASLVQLG----------- 343
S ++ S P+S ++ + S G N T RA L+ G
Sbjct: 286 SVPNTHPRLSDVRSSPVSTPTLATFLQGGSSFGSNAT---SRAPLLSAGLKLPSSSTAPT 342
Query: 344 --------ELSFVDASSDS-------------------YSIDFEKIIEIAQNEEVESVVS 376
LS D + + ++FE I E + VE V
Sbjct: 343 SALKQYLLALSASDNPTPAGQAGAFTSRFAGGGGGEGKVQVEFETIAERMRRRLVEGYVR 402
Query: 377 KRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA 436
+R+G A R+ +L G +++ +I+ + ++ L L +L ++++ T
Sbjct: 403 ERWGDGAGRVLGVL-WGGTMMDERQIAKISLMQASVVRAALTALQSANFLSLQQVPKTPQ 461
Query: 437 RQS--QFLLWKVNRQILWKHVLDEMFHAALN 465
R+ F LW + Q + +L ++ N
Sbjct: 462 REPARSFFLWYCDPQNCYTSLLSTLYGTIAN 492
>gi|340373723|ref|XP_003385389.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Amphimedon queenslandica]
Length = 529
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/495 (22%), Positives = 214/495 (43%), Gaps = 47/495 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FG+LV +V LLR G +++ + + V +L+VLIQ
Sbjct: 1 MSQYQSVVCELILEESFGELVKEVGSYLLRNGGQKLKDLVKGLKKKKSDVIKSLIVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVE-LVQGLLEHG 120
+ V + K+ T Y ++ NIL R F ++ + +E + E +++ + +G
Sbjct: 61 SLVSCISH------KSATIYRMMTSNILCRGMFPQY-AVTGRELSGEIGEAIIEDFILNG 113
Query: 121 RLTLKQMFDRA--KSSEKEGNLVDL---DSLRETLVKLVTAHYVERCPASEPLLMPISEE 175
+ ++ R K S+ ++ +L + ++ V LV ++R +
Sbjct: 114 HSCMSEVITRVVLKLSDTNQDIKELKLAEDVKNHFVNLVDMRLLQRVALA---------- 163
Query: 176 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVES-DVGEKEKNSNNVTP 234
P+++ G + P+ + +P+E +V + G + + P
Sbjct: 164 --PSKELGMTTPSHSLSPQD------KYVIPVELGASDIVAACSARKRGRASPDEGELPP 215
Query: 235 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
+K K D E + + + +V++ +F+ F R + + V +D AA V+ +L
Sbjct: 216 SKKSKSD--EQGKDPLPPDATVLWYIDFQQFQCHYRDQAIVAGVNNRIDPIAAGVMKCLL 273
Query: 295 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDH--VRASLVQLGELSFVD--- 349
++ NS P+ I+ +K + ++L + L L E F++
Sbjct: 274 SLSTQD----VDPNSYPIVGPEIFLLRLKDTLPQYLSLTDTDLEQYLTVLTEDGFIEKVG 329
Query: 350 -ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 408
ASS SY I+F+K EI ++E VV +R+ R+FRLL R LE +ISD +
Sbjct: 330 EASSGSYHINFKKCSEILCQSQLELVVRERFNDKHLRLFRLLCLKKR-LEQKQISDMALI 388
Query: 409 EKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNL 466
K A +ILY L + ++ ++++ + A F L+ + + VL + A NL
Sbjct: 389 PNKKAKEILYSLLAENFITLQEVPRSNDYAPSRTFHLFSIELNTTTRIVLQRCYKALGNL 448
Query: 467 SLRVSYELDREKELL 481
E + K LL
Sbjct: 449 MTCRKEEGSKNKRLL 463
>gi|270006046|gb|EFA02494.1| hypothetical protein TcasGA2_TC008189 [Tribolium castaneum]
Length = 506
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 109/490 (22%), Positives = 209/490 (42%), Gaps = 78/490 (15%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +YG ++ ++ FG +V KV L + G + +K++T+L +VK AL +LI+
Sbjct: 1 MSIQYGRVVSL-ILLERFGPVVEKVGTYLFQYGTVPLLYIKKHTDLPISKVKEALCILIK 59
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
V FT P+ + Y + + +L +R+AK++ ++ ++F +C +++ LL+
Sbjct: 60 YRLV-TFT---PNRNENVANYTLQHERVLLMLRYAKYINLIKKKFGTECELIMEELLQRS 115
Query: 121 RLTLKQM----FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 176
T ++ +R K + V + +LRE + L+ A Y+ R +P S E+
Sbjct: 116 YWTASELILKVIERLKKDHNKN--VTILALREKIFSLLAAQYLIR--------LPYSMED 165
Query: 177 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 236
P K ++ P TI+ F + V+S N P +
Sbjct: 166 KPVPSLVIKETEQFS-PPTID--------------FKQIALVQS----------NKAPVD 200
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
+Q V + NF+ F + +R K ++ D+ A + +LQ
Sbjct: 201 S-------------LPDQGVYWTVNFDRFHQDMRDKLIVNAFIKKFDENAGEFVRLLLQQ 247
Query: 297 TS-SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNM---------TLDHVRASLV-QLGEL 345
+ + N VP + I + V K +++ L+ + L+ Q GE
Sbjct: 248 MYIRTQPWAEVSNPVP--IVEIRDLVRKQATHQHLLAFFDQYVNVLEQDSSKLIRQSGE- 304
Query: 346 SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 405
A S+ I ++ E VE +V +++ A RIFRL+ KS + +E D+I
Sbjct: 305 ----AGGGSFQIFLKETFTQFAWETVEQIVLEKFDTKAARIFRLV-KSKQYIEPDQIQQL 359
Query: 406 TFVEKKDAPKILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAA 463
+ K+A ++ Y+L ++ +L ++ L + F L+ N + + L+ +
Sbjct: 360 AMIPAKEAKRLSYQLLEENFLQVQDLKKSTSNGPNKSFTLFYTNLDQIVRMTLELCYKTL 419
Query: 464 LNLSLRVSYE 473
N+ R ++E
Sbjct: 420 FNIMTRKNHE 429
>gi|405121025|gb|AFR95795.1| hypothetical protein CNAG_02025 [Cryptococcus neoformans var.
grubii H99]
Length = 595
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 111/511 (21%), Positives = 225/511 (44%), Gaps = 60/511 (11%)
Query: 14 ITNH-FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
IT+H FGD+V++V LL +G L + R + LS +ALL+L+Q N VQ+
Sbjct: 15 ITSHAFGDIVSRVASTLLNRGRLPAPTIARLSGLSPPVALSALLILMQHNLVQSNGASAK 74
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ + + QY + + L R+R+ + L I + D +++V+ L+ G+L + +
Sbjct: 75 ETGE-DEQYEFIVEECLLRLRWGRMLAITHERVDFLSMQVVKQLMIFGKLRVPDII---S 130
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE------GPARKKGSKS 186
+ + + + +++ +++ L+ H+++ + P L + ++ R+
Sbjct: 131 ALGGDADAIRAEAITGSIITLLHNHFLQ---TTAPELQILESDQIARRFAANKRRLAQAQ 187
Query: 187 AKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGEKRKHDVLE 244
+ I +EAA + S+ +T + + +KN+ KR+
Sbjct: 188 GSALLSANDITNCRLEAAHDVHTANESLRAITRILITKPKVDKNT-------KRRKTGRA 240
Query: 245 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT---SSAE 301
++E A +Q V R N++ + +R+ + + GA V+ A+L A+ +S
Sbjct: 241 IEETDYALKQDVHLRVNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLRDTSLL 300
Query: 302 KKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASLVQL-GELSFVDA 350
K +T + P+ ++SI + S A ++ D VR L L GE A
Sbjct: 301 KDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRTYLSILAGEDQLTGA 358
Query: 351 -----------SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLET 399
++ Y ++FE I + + +V ++ G A R+ ++++S + ET
Sbjct: 359 GAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLGDKAARVLAVVTRSSKAFET 418
Query: 400 DKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFLLWKVNRQI 450
I D + KDA IL +L K + +++ T A+ +++ LW V+
Sbjct: 419 -TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWAVDLSR 477
Query: 451 LWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ +L ++ N+ R E+D++K +L
Sbjct: 478 CYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|350417205|ref|XP_003491308.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Bombus impatiens]
Length = 496
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 98/486 (20%), Positives = 207/486 (42%), Gaps = 75/486 (15%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67
K ++ HFG +V V E L + G ++ T L ++K +L VLI+ V
Sbjct: 7 KLCFSILFEHFGPIVQSVAEDLFKHGARPIGLIRHATHLPITKIKESLCVLIKHGLVTYN 66
Query: 68 TTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 127
E+ +Y ++ +N+L +R+ +++ + +C +++ +L +G +T +
Sbjct: 67 QAEK------GMEYSLIVENVLLILRYPRYIFFVKSMCGNECEMILEEVLMNGYITASEA 120
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 187
AK+ +K +E+ P+ +P+ +E+ K
Sbjct: 121 I--AKTYKK----------------------IEQSPSDLQPSVPVLKEKFELLVKNQFLM 156
Query: 188 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE 247
+ +G TIE++ + + + + +T K N++ +
Sbjct: 157 RSLG---TIEERNEKCNFTLPDLNLAAIT--------KRIEGNDI--------------D 191
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSSAEKK 303
CG + + ++ NF+ F + R + I + LD+ A +L M T+S E
Sbjct: 192 CG---DSKIYWKVNFDRFTQDFRDQIIISAISRRLDENAGVLMRQLLILMYLRTASWED- 247
Query: 304 VKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV----DASSDSYSIDF 359
T N +PL+ I E V K + + L++ F+ D+ YS++
Sbjct: 248 --TSNPIPLT--EIKEAVRKVDCPLLIQYLDQYLRLIEEDSSQFLKRVGDSGGGQYSVNM 303
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
++ + +E++V +R+G A RIFRL+ ++ + +E ++I + K+A + Y
Sbjct: 304 KEAFKQLTWTTLENIVMERFGSKAARIFRLV-RNRKYIEQEQIQQLAMIPAKEAKHLTYT 362
Query: 420 LWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
L ++ YL ++++ V+ A F L+ ++ ++ ++ +HA N+ R YE
Sbjct: 363 LLQENYLQIQEIKKSGVSAAPIKTFFLFHIDLNLVVHMEVEHCYHALYNIMQRREYEASS 422
Query: 477 EKELLN 482
K +++
Sbjct: 423 NKRMID 428
>gi|157116201|ref|XP_001652793.1| DNA-directed RNA polymerase III, 62-kS-subunit, putative [Aedes
aegypti]
gi|108876581|gb|EAT40806.1| AAEL007496-PA [Aedes aegypti]
Length = 507
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/478 (21%), Positives = 198/478 (41%), Gaps = 62/478 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V V + L T V + T LS +V AL +L++ QP
Sbjct: 12 IVQQHFGDVVRMVADDLFAAVAKTLSMVIKSTGLSKSEVCKALAILLKF----GLARHQP 67
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR-- 130
+ + T+Y++ ++ +L +R+ +F+ ++ ++ +C L + LL G T + +
Sbjct: 68 NKAGSATEYILDYEKVLMVLRYPRFVHLIQTKYGPECATLTEELLRAGCQTASYVILKGT 127
Query: 131 AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKI 190
A S K+ N + RE LV +Y R A +P K I
Sbjct: 128 AISDVKDKNTIT--KFREKFSDLVAKNYFIR--APDP--------------------KPI 163
Query: 191 GEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGV 250
+E E+A N + + RK L+ +
Sbjct: 164 DPSNELEMLDYESA-----------------------NLFQMPELDLRKLLDLQEGKTTK 200
Query: 251 ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSV 310
A ++ + + N E F R I+ +D A L +LQ S K + ++
Sbjct: 201 APDEGIHWLVNLEKFHLDFRDSIMINAAERLIDSSAGECLKFLLQLMYSRTKPWEMVSN- 259
Query: 311 PLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELS-FVDASSDSYSIDFEKIIEIAQ 367
P+ + + + K M LD A + + +S F D ++++ +KI+E
Sbjct: 260 PIPMVELKQLCEKKSNNLEMIKFLDQYVAVIESVNFVSKFGDTGGGQFTVNMKKILEQLT 319
Query: 368 NEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 427
+E+V++++YG A RIFR++ + + +E + I + K+A ++ YKL ++ +L
Sbjct: 320 WSCIENVITEKYGSKAARIFRVI-RMKKYIEQEDIQKEAMIPAKEAKQLTYKLLEENFLQ 378
Query: 428 MEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
++ TG + F L+ VN+ + +L+ + A N R +++ K L+
Sbjct: 379 IQTFRKTGGGNAGAPKSFFLFYVNQAQIVSMLLEICYKALYNSITRSTHDKTVNKRLI 436
>gi|328785682|ref|XP_394638.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Apis
mellifera]
Length = 496
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 100/488 (20%), Positives = 209/488 (42%), Gaps = 89/488 (18%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V E L + G ++ T L ++K AL VLI+ V+ TE+
Sbjct: 12 ILFEHFGQIVQCVGEDLFKYGAKPLVLIRHTTHLPVTKIKEALCVLIKHGLVKYRQTEK- 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA- 131
+Y+++++ +L+ +R+ K++ + + +++ +L++G +T ++ +
Sbjct: 71 -----GIEYILIYERVLNILRYPKYMFFVKTNCGNEAEMMLEQVLKNGYITASEVIIKTY 125
Query: 132 KSSEKEGNLV--DLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
K E+ ++ + L+E L+ ++ R +EEEG +++
Sbjct: 126 KRMEQSPCIIQPSIPVLKEKFELLIKYQFLMRSTNK-------NEEEGNSKR-------- 170
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
+ LP + D+ K LE D C
Sbjct: 171 ------------DFTLP------------DLDLAAISK--------------YLEGDNCN 192
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSSAEKKVK 305
+ D+ + + N + F + R + + + LD A +L M T+S E
Sbjct: 193 LKDK--IYWEINIDRFTQDFRDQIIVSSISKRLDKNAGELMRRLLFLMYLRTASWED--- 247
Query: 306 TKNSVPLSLSSIYEEVIKSEAGRNMTL--DHVRASLVQLGELS--FV----DASSDSYSI 357
T N +P + E+ + N L H+ L + E S F+ D+ YS+
Sbjct: 248 TSNPIPFA------EIKDAVKKLNYPLLTQHLDQYLRLIEEDSSQFLKRVGDSGGGQYSV 301
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
+ ++ +E++V +R+G A RIFRL+ ++ + +E ++I + K+A +
Sbjct: 302 NMKEAFNQLAWASLENIVMERFGSKAARIFRLV-RARKYIEQEQIQQLAMIPAKEAKHLT 360
Query: 418 YKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
Y L ++ YL M+++ V+ A F L+ ++ ++ + ++ +HA N+ R YE+
Sbjct: 361 YTLLQENYLQMQEIKKSGVSAAPIKTFFLFHIDLNLVVRMEIEHCYHALYNIMQRREYEV 420
Query: 475 DREKELLN 482
+ K +++
Sbjct: 421 NSNKRMID 428
>gi|299753734|ref|XP_001833454.2| hypothetical protein CC1G_05154 [Coprinopsis cinerea okayama7#130]
gi|298410438|gb|EAU88388.2| hypothetical protein CC1G_05154 [Coprinopsis cinerea okayama7#130]
Length = 505
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 106/449 (23%), Positives = 190/449 (42%), Gaps = 42/449 (9%)
Query: 42 RYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTIL 101
RY+ L V+ +LVLIQ N V +E Y V D L R+R+ +++
Sbjct: 6 RYSGLRPRTVRGCILVLIQHNIVWHVQSE-----GEQEMYEVNLDECLMRLRYGRYIFQA 60
Query: 102 SQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 161
+ F Q ++VQ +++HG+L +F E + L ++ L KLV+ Y++
Sbjct: 61 EKLFGQAGADIVQIIMDHGKLRPPDIFALLHVHESKA----LAQHKQALYKLVSGSYLK- 115
Query: 162 CPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD 221
AS P +S + + + + K +G P +Q+ EA E R +
Sbjct: 116 --ASTP-RSHVSPRDRLIQYEIEEKKKIVGFPTA--KQLREAKEVAEG-RLKREDDESEK 169
Query: 222 VGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 281
+G K K + T K LE +E V DE V +R N E F +R++ ++ +
Sbjct: 170 IGLKRK-AKEQTGHRSSKKKALE-EETVVDDE--VFFRVNCERFNVHIRNEIIVNAAKDR 225
Query: 282 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSE--------AGRNMTLD 333
+ A +V+ A ++AT A + S P+S+S++ + + R + L
Sbjct: 226 YNSQAGSVMQAAIKATEGANPSLSDARSDPVSVSNVIMLLTDDRELSSGLVYSSRKVPLA 285
Query: 334 HVRASLVQL----------GEL-SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRD 382
V L G+ +F+ +D+E I + +E++ +++G +
Sbjct: 286 TCVKDYVGLLAAADNPTPAGKAGAFLSFGGSKVQVDYETISRRLRRRLLEAMAQEKHGPE 345
Query: 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--Q 440
RI RLL +G++ E +IS + KD +L L D + +++ + R
Sbjct: 346 GVRIIRLLLDTGKMDEK-QISKVVLMASKDVRPLLAALSADSLVSTQEVPKSADRNPTRT 404
Query: 441 FLLWKVNRQILWKHVLDEMFHAALNLSLR 469
F LW V+ + +L + N+S R
Sbjct: 405 FYLWYVDLYKAYSSLLGNAYKTLYNISAR 433
>gi|134112521|ref|XP_775236.1| hypothetical protein CNBE5090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257888|gb|EAL20589.1| hypothetical protein CNBE5090 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 572
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/512 (20%), Positives = 223/512 (43%), Gaps = 59/512 (11%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ + FGD+V++V LL +G L + R + L+ +ALL+L+Q N VQ+
Sbjct: 14 QIVAHAFGDIVSRVASTLLNRGRLPAPTIARLSGLTPPVALSALLILMQHNLVQSNGASA 73
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
+ + + QY + + L R+R+ + L I + D +++V+ L+ G+L + +
Sbjct: 74 KETGE-DEQYEFIVEECLLRLRWGRMLAITHERVDFLAMQVVKQLMIFGKLRVPDIISGL 132
Query: 132 KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE------GPARKKGSK 185
+ + + +++ +++ L+ H+++ + P L + ++ R+
Sbjct: 133 GG---DADAIRAEAITGSIIALLQNHFLQ---TTAPELQILESDQIARRFAANKRRLAQA 186
Query: 186 SAKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGEKRKHDVL 243
+ I +EAA + S+ +T V + +KN+ KR+
Sbjct: 187 QGSALLSANDITNCRLEAAHDVRTANESLRAITRVLITKPKVDKNT-------KRRKGGK 239
Query: 244 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT---SSA 300
++E +Q V R N++ + +R+ + + GA V+ A+L A+ +S
Sbjct: 240 AIEESDYVLKQDVHLRVNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLRDTSL 299
Query: 301 EKKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASLVQL-GE----- 344
K +T + P+ ++SI + S A ++ D VR L L GE
Sbjct: 300 LKDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRTYLSILAGEDQLTG 357
Query: 345 ------LSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLE 398
L +++ Y ++FE I + + +V ++ G A R+ ++++S + E
Sbjct: 358 TGAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLGDKAARVLAVVTRSSKAFE 417
Query: 399 TDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFLLWKVNRQ 449
T I D + KDA IL +L K + +++ T A+ +++ LW V+
Sbjct: 418 T-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWAVDLS 476
Query: 450 ILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ +L ++ N+ R E+D++K +L
Sbjct: 477 RCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|301620366|ref|XP_002939548.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Xenopus
(Silurana) tropicalis]
Length = 471
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/470 (22%), Positives = 201/470 (42%), Gaps = 67/470 (14%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ H+G++V +V L+R G + + T S +QVK AL VLIQ N V T Q
Sbjct: 12 LLQEHYGEIVDRVGTFLIRTGNQPLRVIANETGTSLDQVKKALCVLIQHNLV----TYQL 67
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ + +Y D L +R+ +++ + +V+ LL +G++TL K++
Sbjct: 68 NK-RGFVEYKAHVDRFLRILRYPRYIYTAKTLYGDTGELIVEELLLNGKMTLSAAVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + + ++ + T L H+V+RCP + K A
Sbjct: 127 DRLTETMEGNQSMEYSEVSATFTHLADTHFVQRCPTVQ-----------------EKDAT 169
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKNSNNVTPGEKRKHDVLELDE 247
+ G P + L M +V + + G++ ++S++ G + K E ++
Sbjct: 170 E-GRPP------LAPTLQMNEKEMYIVPKLNMTGRGKRRRSSDDDDGGSQAKRPKKEAED 222
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + V ++ N E F + R + I V +D ++ ++ ML+ + +V T
Sbjct: 223 ---SQDDGVYWQVNTERFHQHFRDQAIISAVSNKMDQTSSEIVRTMLRMS-----EVTTS 274
Query: 308 NSV----PLSLSSIYEEVIKSEAGRNMT---LDHV-----RASLVQLGELSFVDASSDSY 355
+S PLS + I+ + G NM+ LD + ASL Q+G ++S+
Sbjct: 275 SSAAYTQPLSSNEIFRSL---PTGYNMSKQVLDQILVIFCPASLHQIGSCR----GAESF 327
Query: 356 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 415
S ++ ++ R+G RIFRLL + R LE ++ D V K+A +
Sbjct: 328 SCT-RPGGDLCLTPPPLTLC--RFGSRCARIFRLLLRK-RHLEQKQVEDFAMVPAKEAKE 383
Query: 416 ILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 463
+LYK+ + ++++ T A F L+ VN + +L +
Sbjct: 384 MLYKMLFQNLVSLQEIPKTPDHAPSRTFYLYTVNTLPCARMLLQRCYKGG 433
>gi|348684862|gb|EGZ24677.1| hypothetical protein PHYSODRAFT_487168 [Phytophthora sojae]
Length = 600
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 141/318 (44%), Gaps = 25/318 (7%)
Query: 228 NSNNVTPGEKRKHDVLELDECGV-ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 286
+ + T GE D D G DE+S+V+R +R LRHK CI +++ A
Sbjct: 286 SGDGTTGGETSGEDAP--DGSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENINAVA 343
Query: 287 ANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYE-----EVIKSEAGR--NMTLDHV---- 335
+++AMLQ +S E++ S P+S +++ + + EA + L+++
Sbjct: 344 GVIVAAMLQHSSPREREKDEPTSFPVSARDLFDMESVKKALPPEANNPWRLLLNYIMVMC 403
Query: 336 ---RASLVQLGELSFVDASSDS-----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIF 387
++++ + +F + + Y + +KI+E Q + + +YG + RI
Sbjct: 404 RDKSGMVMKVAQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIV 463
Query: 388 RLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWK 445
RLL + R LE I + + DA LY+L+ D L M+++ F W
Sbjct: 464 RLLMEK-RQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWS 522
Query: 446 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRIL 505
V+ + + + + + L R +E + KEL+ D+++++ +
Sbjct: 523 VDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDR 582
Query: 506 LESSQMKLDDAILLFHDF 523
L+ + + LD ++L+ DF
Sbjct: 583 LDRAIIHLDGMLMLYRDF 600
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 50 QVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQC 109
Q+K ALL L+Q N + G Y + L+R+RF KF+ + + F Q
Sbjct: 2 QIKCALLKLLQHNVLDVTPVAGARGGAPTVAYNINVQEALYRLRFPKFIELAKETFGVQG 61
Query: 110 VELVQGLLEHGRLTLKQMFD 129
+++ +L GR+ + Q +
Sbjct: 62 EVVMEEMLVQGRVRMDQSLE 81
>gi|449510977|ref|XP_004175526.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like, partial [Taeniopygia guttata]
Length = 636
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/492 (23%), Positives = 207/492 (42%), Gaps = 55/492 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +FG++V KV LLR GP + + T L +QVK AL VL+Q A QP
Sbjct: 12 LLRENFGEIVEKVGNSLLRTGPRPLRLLVGDTGLLPDQVKKALCVLLQHGL--ARYAPQP 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK----QMF 128
GP +Y +L +R+ +++ + LV+ LL HG L + ++
Sbjct: 70 RGP---VEYEARSRRVLRLLRYPRYIYTAKTLYGDPGELLVEELLLHGHLPMSAAVARVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
+R + ++G +D+ + T V+L H+++RCPA L + + AR A
Sbjct: 127 ERLTETMEDGKSMDVSEVSATFVRLADTHFIQRCPAPPALPPEVPPD---ARVPPPAPA- 182
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR-KHDVLELDE 247
GE + RF V G++ + + GE R K E
Sbjct: 183 --GE---------------DKDRFLVPRLGLGGKGKRRHSCDEEEEGEHRAKRQKQEGGS 225
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++ N E F + R + + V + +D ++ V+ ML+ S
Sbjct: 226 SEPPPDDGIYWQVNLERFHQHFRDQALVSAVASRMDQTSSEVVRTMLR-MSEVTTASGAS 284
Query: 308 NSVPLSLSSIYEEVIKSEAGRNMT---LDHVRASLVQLGELSFVDASSDS----YSIDFE 360
++ PLS + I+ + AG N++ LD A L L FV + DS Y++
Sbjct: 285 HTQPLSSNEIFRSL---PAGYNISKAVLDQYLALLAD-DPLEFVGKAGDSGGGTYTVSIY 340
Query: 361 KIIEIAQNEEVESVVS---------KRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 411
+ +++ + R+G RIFRLL + + LE ++ D + K
Sbjct: 341 NGLSSLWXAQIKDFLPXIPHPPSPLPRFGSRCARIFRLLLRK-KHLEQKQVEDFAMIPAK 399
Query: 412 DAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 469
+A +LY++ + + ++++ T A F L+ VN + +L + + NL R
Sbjct: 400 EAKDMLYRMLSENLVALQEIPKTPDHAPSRTFYLYTVNVMAAARMLLHRCYQSVANLMER 459
Query: 470 VSYELDREKELL 481
+E+ K LL
Sbjct: 460 RHHEMRENKRLL 471
>gi|405945676|gb|EKC17433.1| DNA-directed RNA polymerase III subunit RPC3 [Crassostrea gigas]
Length = 487
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 109/488 (22%), Positives = 193/488 (39%), Gaps = 102/488 (20%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG+ V+ V + LL+K P + T L EQVK L +LIQQN V F +
Sbjct: 12 LLFQQFGEQVSVVGKYLLQKSPSPLHLISSETHLDTEQVKKILCILIQQNIV-TFGQHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK------- 125
+ +Y + IL+R+ F K++ + L++ +L+ G++ +
Sbjct: 70 ---RGFIEYSIRTSEILNRLWFPKYIYCAKTLYGDAAELLLEDVLQRGQVQMSKVIEVVM 126
Query: 126 QMFDRA-----KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPAR 180
Q F+ A K E +VD LV H+++RC L PI
Sbjct: 127 QRFNEALETSGKQKISESFVVD------KFSNLVRTHFLQRC------LDPIK------- 167
Query: 181 KKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH 240
S+S K +G + E++ + LP D+ K K S++ P KR
Sbjct: 168 ---SESNKVVGLEVSGEEETL-YRLP--------------DLSRKRKKSHDDGPPAKRSK 209
Query: 241 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 300
+E + + + +R N E F + R + + + + +D A VL AML+ +
Sbjct: 210 SEVEGERPADDEGDGIFWRVNNERFHQMFRDQAIVQAISSKIDRSAGEVLRAMLRVSEVK 269
Query: 301 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YS 356
+ T + P+S++ I+ + K R + ++ SL+ +F+ DS YS
Sbjct: 270 TAGMATVTT-PISVTEIFNALPKDLMARPLLETYL--SLICDDSTNFLSKVGDSGGGMYS 326
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
I +IE D + K+A +
Sbjct: 327 ISILSVIE---------------------------------------DFVMISAKEAKDL 347
Query: 417 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
LY L+ + ++ ++ T A F L+ VN Q + VL+ + A N ++ E+
Sbjct: 348 LYTLFSENFITTTEISKTPDHAPSRTFFLFTVNIQHVASMVLNRCYKALYNAMVKKETEV 407
Query: 475 DREKELLN 482
+ + LL+
Sbjct: 408 NEHRRLLD 415
>gi|170048122|ref|XP_001851545.1| DNA-directed RNA polymerase III subunit C [Culex quinquefasciatus]
gi|167870301|gb|EDS33684.1| DNA-directed RNA polymerase III subunit C [Culex quinquefasciatus]
Length = 507
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/476 (20%), Positives = 193/476 (40%), Gaps = 58/476 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I HFGD+V V + L T + + EL+ +V A+ +L++ + QP
Sbjct: 12 IIQQHFGDVVRMVADDLFSGVAKTLPMIVKSCELTKSEVCKAIAILLKF----SLARHQP 67
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ T+Y++ ++ +L +R+ +++ ++ ++ + L + LL G T + +A
Sbjct: 68 NKAGTATEYILEYEKVLMILRYPRYVHLIQTKYGHESAILTEELLRAGCQTASCIILKAT 127
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
+ + RE LV ++ R P E
Sbjct: 128 AISDAKGKDTITKFREKFSDLVAKNFFIRAP----------------------------E 159
Query: 193 PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVAD 252
P+ ++Q AL E + + ++ RK L+ + A
Sbjct: 160 PKPVDQNTDLLALEYEDPKLFQMPELDL-----------------RKLLDLQEKKTTKAP 202
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 312
++ + + N E F R I V +D AA +LQ + K + K S P+
Sbjct: 203 DEGIHWLINLEKFHLDFRDTIMISSVERLIDPTAAECFKHLLQLMYTKTKPWE-KVSNPI 261
Query: 313 SLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELS-FVDASSDSYSIDFEKIIEIAQNE 369
S++ + + K + LD A L LS F D Y+++ + I E
Sbjct: 262 SMAELKQLCEKKSDNLELLKFLDQYVAVTESLNYLSKFGDMGGGQYTVNMKTIFEQLTWN 321
Query: 370 EVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429
+E++++++YG A RIFR++ + + +E + I + K+A ++ YKL ++ +L ++
Sbjct: 322 CIENIITEKYGSKAARIFRVI-RLKKYIEQENIQKEAMIPAKEAKQLTYKLLEENFLQIQ 380
Query: 430 KLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
G + F L+ VN+ + +L+ + + N R +++ K L+
Sbjct: 381 AFRKPGGGNAGAPKSFFLFYVNQMQIVSMLLEICYKSLYNSITRSTHDKTVNKRLI 436
>gi|340715006|ref|XP_003396012.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Bombus terrestris]
Length = 496
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/486 (19%), Positives = 203/486 (41%), Gaps = 75/486 (15%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67
K +++ HFG +V V E L + G + T L ++K +L VLI+ V
Sbjct: 7 KLCFSILSEHFGQIVQSVAEDLFKHGARPIGLIYHSTHLPIIKIKESLCVLIKHGLVTYN 66
Query: 68 TTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 127
TE+ +Y ++ +N+L +R+ +++ + +C + + +L HG +T +
Sbjct: 67 QTER------EMEYSLIVENVLLILRYPRYIFFVKTICGNECEMIFEEVLMHGYITASEA 120
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 187
+ T +E+ P+ +P+ +E+ K
Sbjct: 121 ITK------------------------TYKKIEQSPSDLQPSVPVLKEKFELLVKNQFLM 156
Query: 188 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE 247
+ + +T+E++ + + + +T K N++ +
Sbjct: 157 RSL---DTVEERNEKCDFTLPDLNLGAIT--------KRIEGNDI--------------D 191
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSSAEKK 303
CG + + ++ NF+ + R + I + LD+ A +L M T+S E
Sbjct: 192 CG---DSKIYWKVNFDRLTQDFRDQIIISAMSRRLDENAGALMRQLLILMYLRTASWED- 247
Query: 304 VKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV----DASSDSYSIDF 359
T N +PL+ I E V K + + L++ F+ D+ YS++
Sbjct: 248 --TSNPIPLT--EIKEAVRKVDCPLLIQYLDQYLRLIEEDSSQFLKRVGDSGGGQYSVNM 303
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
++ + +E++V++R+G A RIFRL+ ++ + +E ++I + K+A + Y
Sbjct: 304 KEAFKQLVWTTLENIVTERFGSKAARIFRLV-RNRKYIEQEQIQQLAMIPAKEAKHLTYT 362
Query: 420 LWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
L ++ YL ++++ V+ A F L+ ++ ++ ++ +HA N+ R YE
Sbjct: 363 LLQENYLQIQEIKKSGVSAAPIKTFFLFHIDLNLVVHMEVEHCYHALYNIMQRREYEASS 422
Query: 477 EKELLN 482
K +++
Sbjct: 423 NKRMID 428
>gi|380020291|ref|XP_003694023.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like [Apis florea]
Length = 496
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 102/488 (20%), Positives = 207/488 (42%), Gaps = 89/488 (18%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V E L + G ++ T L ++K AL VLI+ V+ TE+
Sbjct: 12 ILFEHFGQIVQCVGEDLFKYGAKPLVLIRHTTHLPVTKIKEALCVLIKYGLVKYRQTEK- 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA- 131
+Y+++++ +L+ +R+ K++ + + +++ +L++G +T ++ +
Sbjct: 71 -----GMEYILIYERVLNILRYPKYMFFVKTNCGSEAEMMLEQVLKNGYITASEVIIKTY 125
Query: 132 KSSEKEGNLV--DLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
K E+ ++ + L+E L+ ++ R SEEEG ++
Sbjct: 126 KRMEQLPCIIQPSIPVLKEKFELLIKYQFLMRSTNK-------SEEEGNSK--------- 169
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
+ LP + D+ K LE D C
Sbjct: 170 -----------CDFTLP------------DLDLAAIAK--------------YLEGDNCN 192
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV----LSAMLQATSSAEKKVK 305
+ D+ + + N + F + R + + + LD A + L M T+S E
Sbjct: 193 LKDK--IYWEINIDRFTQDFRDQIIVSSISKRLDKNAGELMRRLLFLMYLRTASWED--- 247
Query: 306 TKNSVPLSLSSIYEEVIKSEAGRNMTL--DHVRASLVQLGELS--FV----DASSDSYSI 357
T N +P + E+ + N L H+ L + E S F+ D+ YS+
Sbjct: 248 TSNPIPFA------EIKDAVKKLNYPLLTQHLDQYLRLIEEDSSQFLKRVGDSGGGQYSV 301
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
+ ++ +E++V +R+G A RIFRL+ ++ + +E ++I + K+A +
Sbjct: 302 NMKEAFNQLAWASLENIVMERFGSKAARIFRLV-RARKYIEQEQIQQLAMIPAKEAKHLT 360
Query: 418 YKLWKDGYLLME---KLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
Y L ++ YL M+ K V+ A F L+ ++ ++ + ++ +HA N+ R YE+
Sbjct: 361 YTLLQENYLQMQEXKKSGVSAAPIKTFFLFHIDINLVVRMEIEHCYHALYNIMQRREYEV 420
Query: 475 DREKELLN 482
+ K +++
Sbjct: 421 NSNKRMID 428
>gi|392574302|gb|EIW67439.1| hypothetical protein TREMEDRAFT_74583 [Tremella mesenterica DSM
1558]
Length = 550
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 104/506 (20%), Positives = 217/506 (42%), Gaps = 61/506 (12%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
H++ FG +V+++ L+ +G LT + R + LS ALL+L+Q + VQ+ + E
Sbjct: 14 HLVRQAFGTVVSRIASTLMNRGRLTCPTLARLSALSRSTTMAALLILMQHHLVQS-SGEP 72
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
PD K Y D L R+R+ + L + + E+++ L+ +GRL ++
Sbjct: 73 PDSDKEEA-YEFNMDECLLRLRWGRILAMTLDKLGPSATEVIRSLMLYGRLAKDEIIHAC 131
Query: 132 KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIG 191
N++ ++ E + LV H+++ P E G R +
Sbjct: 132 GGGHGASNIM---AIEEATLLLVRHHFIQ----------PTHPEMGIIRADAEE------ 172
Query: 192 EPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK-------NSNNVT----PGEKRKH 240
++ + + + + + N S G +E +SNN+ P K+K
Sbjct: 173 RRFLTHRRRLYSTKGLAYTTANDLANARSQAGWEESERRAALVSSNNIIVLPEPHPKKKR 232
Query: 241 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 300
++E + ++ ++ R N++ + +R + + VR L+ GAA V+ A+L + +
Sbjct: 233 KLVEPE---LSLRPNIALRINYDRYGVLIRDELIVRAVRDRLNVGAAEVMRAVLTSCLND 289
Query: 301 EKKVKTKNS-VPLSLSSIYEEVIK----------SEAGRNMTLDHVRASL-VQLGE---- 344
E + + V +S + + +++ + + + ++ D V+ L V GE
Sbjct: 290 ESALADPRTLVHVSANDVIDKIPEQACPFIFAGMAGSSKSSLADVVKQYLRVLSGEDQVA 349
Query: 345 --LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLE 398
SF+ S Y ++ E I + + +V ++ G + R+ ++ + ++ E
Sbjct: 350 SGGSFLSTEGTSLNPMYKVELEGICSKLRAALMNELVVQKLGDEGSRVLAVVVTANKVSE 409
Query: 399 TDKISDTTFVEKKDAPKILYKLWKDGYL---LMEKLVVTGARQSQFLLWKVNRQILWKHV 455
T + D + + A L +L K + M +++ GA LW ++ + ++
Sbjct: 410 T-TVRDCAMIPLRSARFYLSELQKLSLVETQEMPRVMGKGAMSKDAHLWSIDLARAYTYI 468
Query: 456 LDEMFHAALNLSLRVSYELDREKELL 481
L ++ N+ LR E+DR+K +L
Sbjct: 469 LSSVYKTLGNIELRKQTEVDRKKVVL 494
>gi|452822521|gb|EME29539.1| DNA-directed RNA polymerase III subunit C3 [Galdieria sulphuraria]
Length = 524
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 123/566 (21%), Positives = 232/566 (40%), Gaps = 108/566 (19%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT--- 69
++ HFG++ A++ L G + + + +++S +VK A+ VL+QQN + A+
Sbjct: 10 IVKFHFGEVYAQIFWNLSTYGACGFKELVKLSKVSAGEVKQAVAVLLQQNVIFAYEKGSG 69
Query: 70 ----EQPDGPKANTQYVVLFD----NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+P +LF+ L R+RF +F+ + + + + L Q LLE G
Sbjct: 70 RVFRNKPWKLDGEEGVEILFEAKVEEALLRLRFPRFIQLCREYYGETGEVLCQILLERGL 129
Query: 122 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 181
L+ + D + +G L + L K++ +V C A +
Sbjct: 130 LSFE---DVIQVGVTQGRLKSSAAADSVLHKMIEEKFV--CLAGYEYY-----------E 173
Query: 182 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 241
K K V++V S G K K S + P R+ D
Sbjct: 174 KNEKD----------------------------VSSVSS--GMKRKRSTDDAPSPAREAD 203
Query: 242 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA---ANVLSAMLQATS 298
+ + + Q +YR + R LRH+ D V + + + A+ AML
Sbjct: 204 MSQRSSETLRFVQLELYRISTSFLNRILRHEAFSDLVVHTVRENSRMVASCFRAMLSLIR 263
Query: 299 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN--MTLDHVRASL--VQLGELSFVDASS-D 353
++ + + SVP+ +I +E+ + +T+D + +L +Q +F+
Sbjct: 264 KEDECFEGEQSVPVQRDAILDEIRNQMPSSSELVTVDQLNEALNVLQDDRYNFISGIGIS 323
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG-----RLLETDKISDTTFV 408
S+ ++ + ++ + E ++ KR+G R++RLL G +LLE + TT
Sbjct: 324 SFVVEIRMMRQLLKQRATEHLILKRHGTSGLRVYRLLLDKGALEQRQLLEFAMLPGTTAR 383
Query: 409 EKKDAPKILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNL 466
EK LY +++DGY+++ ++ F LW V+ ++ +VL + A LN+
Sbjct: 384 EK------LYAMFRDGYVVVNEIPSSSDYKSSRSFFLWSVDVSNVFTNVLCHAYKATLNM 437
Query: 467 SLR------------------VSYELDR---EKELL---------NLPADKRTGPLQDRY 496
+R VS EL+ ++E+L N+ + L++R
Sbjct: 438 LIRMKNLHVEYSRLLGSNLYCVSEELESVPIQQEILERHISSQSSNMNYSCASLELKERL 497
Query: 497 NRIRKVRILLESSQMKLDDAILLFHD 522
++R+ L E S ++LD I+ D
Sbjct: 498 EKLRQRMALYEVSILRLDKNIMCIRD 523
>gi|195445897|ref|XP_002070533.1| GK10977 [Drosophila willistoni]
gi|194166618|gb|EDW81519.1| GK10977 [Drosophila willistoni]
Length = 523
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/490 (20%), Positives = 207/490 (42%), Gaps = 77/490 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ- 71
++ FG++V V CL T + T+L ++V AL VLI+ V +F Q
Sbjct: 12 ILKQCFGNVVESVANCLFSATTRTLSQIVSTTKLPRKEVCVALAVLIRFRLV-SFEPSQT 70
Query: 72 -PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT-LKQMFD 129
P P +Y + ++I+ +R +++ ++ ++ + + L+ G T + ++
Sbjct: 71 NPFLP----EYSLRREDIIFLLRHPRYIYLMQNKYGNVGASITEELIHSGSHTHVNKVLL 126
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
+ E G + ++ R T +++++ HY+
Sbjct: 127 NCLADEDVGT-ANAETHRNTFLQMISDHYI------------------------------ 155
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-------NVTPGEKRKHDV 242
I PE IE + ++P RF +SD E ++ N ++ GE D
Sbjct: 156 IKMPELIEGDDQDESVP----RF------QSDECEYFRHPNIDLHLLSMISKGEASLSD- 204
Query: 243 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 302
+ E ++++ N++ F + R +D ++ L D AA S +L +
Sbjct: 205 --------SKESNMMWTLNYDRFHQDFRDAIMVDSIKRKLGDSAAECFSFILTLIYNTTD 256
Query: 303 KVKTKNSVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELSFV----DASSDSYS 356
+ K S ++ I + + + ++ LD SL+ L F+ D + Y
Sbjct: 257 PWQRKTSNQITFMEIKQTIERKSNNLDLIKYLDQY-ISLLTDDSLGFLRKVGDMGNGQYL 315
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+D E+ E +ESV+++R+G A RIFR++ + + +E + + + K+A +
Sbjct: 316 VDMERAFESLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSL 374
Query: 417 LYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
Y L+++ ++ ++ + G + F L++V ++ + +LD F A N R SY
Sbjct: 375 AYNLFQEQFIHVKVIKKPGGGSNGPAKAFYLYQVKQKDTVRMLLDISFKALYNAIERSSY 434
Query: 473 ELDREKELLN 482
E K L++
Sbjct: 435 EKFEHKGLID 444
>gi|324510541|gb|ADY44409.1| DNA-directed RNA polymerase III subunit RPC3 [Ascaris suum]
Length = 535
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 123/556 (22%), Positives = 232/556 (41%), Gaps = 90/556 (16%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
V ++ +HFG LVA + LL R +++ +K +L++L Q N V T
Sbjct: 23 CVEILEDHFGGLVASLGRVLLCGEATLPIIALRLRKVNVGLIKRSLMILEQHNIV----T 78
Query: 70 EQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 129
+ D + Y + +++L R A+ ++ + + + + L+ GRL+ +
Sbjct: 79 FRMDDRR--VVYSIKPEDVLRLARSARCSFLVKTLYGEVAEAICEELVCQGRLSCSECLR 136
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
R S L ++ +L A V RCP L+ + + P +K +
Sbjct: 137 RVSSRLD----TPLSEVKTKFARLAEAQLVIRCP-----LVEAEDYDCPIFEKQT----- 182
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
+P + ++ A V + N ++ + KRKH E D G
Sbjct: 183 --DPFIMPDLILSA------------------VKQNTTNRDSSSTTRKRKH---EGDGSG 219
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 309
D +++R N F R +R + +D V + +D A + + +E K +K +
Sbjct: 220 DVD-ADILWRLNHPRFERYMRDEMVVDAV-SKIDSFGAECVKTIRTLLKISELKADSKAA 277
Query: 310 VPLSLSSIYEEVIKSEAGRNMTLDH--VRASLVQLGELS------FVDASSDSYSIDFEK 361
L +S ++VI++ M L+ + +L + + S D++ Y +DFEK
Sbjct: 278 ASLPIS--VQDVIRAANTNEMGLERNDIEVALRIMSDDSDQIVRRIGDSAGGLYVVDFEK 335
Query: 362 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
I + +ES++ +++ A RIFRLL + G LE ++I + K++ ++ Y L
Sbjct: 336 AISVQCQSNIESIIREKFDSMAVRIFRLLLQKGH-LEEEQIEKLAMLSSKESKELCYTLL 394
Query: 422 KDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
+ ++ + + T A F L+ V+ L + + D + N+ +R +E K
Sbjct: 395 DEHFISVRHVAKTNDFAPARTFCLYHVDLSDLAQLLYDNICKTLRNVIIRRRHETKEHKM 454
Query: 480 LL-----------NLPAD---------KRTGPLQDRY---------NRIRKVRILLESSQ 510
L+ N+ AD ++ G ++D Y R R+ + L +
Sbjct: 455 LIERQLKMESIIANIEADASLDEASKKQQIGEVEDMYLTAADRSTLERYRRGQNDLLCHE 514
Query: 511 MKLD-DAIL--LFHDF 523
M+L+ DA+L LF DF
Sbjct: 515 MELNHDALLFSLFIDF 530
>gi|449547618|gb|EMD38586.1| hypothetical protein CERSUDRAFT_153553 [Ceriporiopsis subvermispora
B]
Length = 574
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 131/583 (22%), Positives = 232/583 (39%), Gaps = 99/583 (16%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
+I +HFG L V +L +G L ++ R++ L V+ A+LVL+Q N +
Sbjct: 12 QIIRSHFGPLTGAVAGVILVRGRLALPHIVRFSGLKPRTVRAAVLVLVQHNLLW---HSH 68
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
DG + V + L R+R+ +++ + F + E+VQ +L+HG+L
Sbjct: 69 VDGEGEMLE--VNVEECLMRLRYGRYVAQAEELFGKAGSEIVQLVLDHGKL--------- 117
Query: 132 KSSEKEGNLVDLDSLR-ETLVKLVTAHYVERCPASEP--------------LLMP--ISE 174
+ E L D ++ E L + ++Y+ P + P L P +
Sbjct: 118 RPPEIISQLSVYDPIKGEYLARCFGSYYI---PVAAPAIYSQALHKLVDAFYLKPSTVLS 174
Query: 175 EEGP----ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 230
+ P R + + AK G P + +++ EA EA R +G K K +
Sbjct: 175 HQSPRDRQIRYEKEEKAKISGFPTS--KELREAKETAEA-RLKREEEEAEQIGMKRKAKD 231
Query: 231 NVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 290
KRK + + V +R N + F +R+ + ++ A VL
Sbjct: 232 QPHRPSKRKAVEED------VVAEEVYFRVNCDRFNVHVRNDIIVTAAVERFNESAGLVL 285
Query: 291 SAMLQATSSAEKKVKTKNSVPLSLSSIY----EEV--------IKSEAGRNMTLDHVRAS 338
A L+AT +K V S P S+++I EEV S+ NMT+ +R
Sbjct: 286 RAALKATEGKQKSVSDIRSDPTSVANISMQLSEEVDLSAGLALPSSKKPSNMTM--LRDF 343
Query: 339 LVQLGEL----------SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 388
L L SF+ + ++FE I + +E++ +R+G +A RI R
Sbjct: 344 LGILASADNPTPSGRAASFISFTGSKVQVEFEIIGRRLRQRVLETIARERHGDEAVRIIR 403
Query: 389 LLSKSGR---------------LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV 433
LL +G+ LL +IS + KD +L L D + ++++
Sbjct: 404 LLLDAGKMDEKQASGGAIYKGVLLIAVQISKVGMMANKDVRPLLSALSADTLISLQEVPK 463
Query: 434 TGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGP 491
+ R F LW V+ Q + +L ++ N+ R E + L +R+
Sbjct: 464 SADRNPTRTFYLWYVDLQKAYSVLLRNLYKTLYNIVARREAEAEEPTVKAVLEKRQRSDV 523
Query: 492 LQDRYNRIRKV-----------RILLESSQMKLDDAILLFHDF 523
QD + + +V R L Q+++++A+ + D
Sbjct: 524 SQDEEHLLTRVEREVLAEWDKKREKLAVLQLRVEEAVFILRDL 566
>gi|393220230|gb|EJD05716.1| hypothetical protein FOMMEDRAFT_103906 [Fomitiporia mediterranea
MF3/22]
Length = 546
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 178/424 (41%), Gaps = 72/424 (16%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ HFG L AKV LL +G LT + R+T L + A+L+L+Q N +E
Sbjct: 11 VQIVHAHFGPLTAKVASALLTRGRLTLPQIVRFTALRPRTARAAVLILVQHNLAWHSQSE 70
Query: 71 QPDGP--KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT---LK 125
+ DG + NT+ +L R+RF F+ Q F E+V +L+HG+L ++
Sbjct: 71 E-DGEMIEFNTEECLL------RLRFGTFVWQADQLFGSAAAEIVSLVLDHGKLRPPDIR 123
Query: 126 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS--------EEEG 177
F KS K+ ++ + L +LV++ Y+ P++ +L +S E+E
Sbjct: 124 SHFSSPKSKGKDASI-----YYQALYQLVSSSYL--VPST--VLFHVSPRDKFLQYEKEE 174
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 237
+ K +AK++ E A A R +G ++ S + +
Sbjct: 175 KNQIKSFPTAKELKE-----------AKERAAARLKREQEDAMKIGLTKRGSAKINGTKL 223
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
K ++ + V +R N F +R K VR ++ V+ A+L+
Sbjct: 224 GKRKAMDD----EVVDDDVYFRVNATKFNIHIRSKLIQTAVRERYNESTTTVMRAILK-- 277
Query: 298 SSAEKKVKTKN--SVPLSLSSIYEEV-----------------------IKSEAGRNMTL 332
SAE K + S +S+++I + +K G +
Sbjct: 278 -SAEAKATMSDVRSDSVSIATIASHIPDEQDITAGLAYSSTKKPSMMSALKEYLGILASA 336
Query: 333 DHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSK 392
D+ + +SF SS +++E I + +E+V +RYG +A R+ RLL +
Sbjct: 337 DNPTPAGRAASFISFAGVSSGKVYVEYEIICRRLRRRVLEAVARERYGDEAVRVVRLLLE 396
Query: 393 SGRL 396
+G++
Sbjct: 397 NGKM 400
>gi|328768118|gb|EGF78165.1| hypothetical protein BATDEDRAFT_91024 [Batrachochytrium
dendrobatidis JAM81]
Length = 485
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 120/540 (22%), Positives = 214/540 (39%), Gaps = 95/540 (17%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG LV KV LL KG + + ++L + ++ +L +LIQ + Q E
Sbjct: 12 ILKEHFGSLVQKVGFVLLSKGRSNLAAIAQSSKLPIKIIRESLFILIQNH--QVTFAENT 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+G + Y IL R RFA +++ S ++ +LE G L ++ K
Sbjct: 70 EGMRVVVYYEANIKEILLRDRFALYISTASTHLGVNAGLIISKVLEAGYLAPLKLLKSCK 129
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISEEEGPARKKGSKSAKK 189
+EK D+ + E KLV +V A + L + I EE G
Sbjct: 130 LTEK-----DISACME---KLVQGRFVRTVSAIDSLTINDKYILEEREAIANTG------ 175
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
A P+ + + + + EK N TP K VL+ +E
Sbjct: 176 -------------AGAPLSSTELA---KLRKSLAEKRSNYAQ-TPSSGTKRKVLDFEE-- 216
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 309
E++ K + ++D A ++ AML T S K
Sbjct: 217 ---EEN---------------RKKIAELASQRVNDTAGRLIKAMLDHTYSQLNSCKE--- 255
Query: 310 VPLSLSSIYEEVIKSEA-GRNM---------TLDHVRASLVQLGELSFVDASSDSYSIDF 359
PLS SI E+I + G+ + ++++ A + + ++ + + Y+I+
Sbjct: 256 -PLS-PSIRREMIGTLVRGQELHVHGHSNDPAMEYIEALVSERAKI-VSNLNGTLYAINL 312
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
+ + Q + +ES++ +++G RI+RLL +L E ++ + K A + LY
Sbjct: 313 RDSVRVMQIDLIESIIQEKFGDVCRRIWRLLYMKQKLDE-KQVGKQAMINNKVARECLYT 371
Query: 420 LWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 477
+ K+G + ++ + T + F LW V+ + +L + + LR R
Sbjct: 372 MLKEGLVYLQDVPKTMDHSASRTFFLWYVSIERTCTVLLTNAYKTLHRIKLR------RT 425
Query: 478 KELLN----LPADKRTGPL----------QDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
KELL+ L R+ L Q+ + V L S+M++D ++L DF
Sbjct: 426 KELLDRTLLLEKTNRSDVLSGEAQLTTTDQENLAHLNTVLKKLHISEMRIDQMVMLLRDF 485
>gi|328874073|gb|EGG22439.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 633
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 146/316 (46%), Gaps = 33/316 (10%)
Query: 230 NNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 289
N + E+ +HD+LE EQ ++ N++ F+ + CID V LD +A +
Sbjct: 329 NVINQVEQDQHDLLE--------EQKTYWKVNYDQFLLEFKLMACIDFVEHKLDGKSAAL 380
Query: 290 LSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEA----GRNMTLDHVR----ASLVQ 341
+ML+ + K N+ +S I +EV K G + +D+ SL+
Sbjct: 381 YESMLKLVKRSIKSSPDPNA-NISPKFIADEVFKDYNQMVDGMDQQMDNKHFENYLSLMA 439
Query: 342 LGELSFVDASSDS-------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
+ + + S Y+I+ + ++ + +ES++ ++YG R+F+LL
Sbjct: 440 ASRPAIITKQARSSTLETGIYNINISDVAKVVNQKMLESIIKQKYGDGGLRLFKLLM-IK 498
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILW 452
+ L+ +I++ + K+ +L+K+ + G + ++++ + F L+ VNR +
Sbjct: 499 KFLDAKQIAEMAMIPLKECKVLLFKMMERGVVKLQEVPRSADHFAAKTFYLFFVNRDAVT 558
Query: 453 KHVLDEMFHAALNLSLRVSYE----LDREKELLNLPADKRTGPLQDRY-NRIRKVRILLE 507
+ +D+++ A N LR+ E D K L +P DK Q + +++K+ +LE
Sbjct: 559 EMTIDDIYKAIYNTRLRLKAEAQPHADLIKRLETVP-DKEMSEDQSKIVTKVQKITEVLE 617
Query: 508 SSQMKLDDAILLFHDF 523
+ + LD +L+ F
Sbjct: 618 ITILNLDSDLLVLSHF 633
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 96/185 (51%), Gaps = 23/185 (12%)
Query: 22 VAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCV--QAFTTEQPD----G 74
V++V + L+ KG T R + ++K +L VL+Q V + + + D G
Sbjct: 20 VSEVFKHLVNKGKSTIRGLTTALKTIPTNRIKQSLQVLLQHQLVDFEEYIIKDEDKNKKG 79
Query: 75 PK----ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 130
P ++ YV +N +HR+R K++ + + +DQ+C +++ L+++GRLT++ + +
Sbjct: 80 PAEDQVSDAYYVANVNNAIHRLRIGKYINFIKERYDQECAVIIEELMDNGRLTMESVVKQ 139
Query: 131 AKS--SEKEGNLVDLDSLR---ETLVKLVTAHYVERCPASEPLLMPISEEEGPA-----R 180
+ S S++ G+ D +R + +LV H++ + P P+ ++E+G A R
Sbjct: 140 SVSYYSQRAGSFDPEDLVRRFEDLFTQLVVDHFIMKVPKPRPISQ--NDEDGEATVKEKR 197
Query: 181 KKGSK 185
+KG +
Sbjct: 198 EKGGR 202
>gi|281209832|gb|EFA84000.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 853
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 126/621 (20%), Positives = 252/621 (40%), Gaps = 140/621 (22%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ-- 65
K A ++ +FG+ V KV L+ +G T +N+ + TE+ ++V+ L VLIQ N V
Sbjct: 268 KVACDIVKENFGEDVEKVYRLLVTRGKSTIRNMVQGTEMKTKRVRQCLFVLIQHNLVDYE 327
Query: 66 ---AFTTEQPDGP-----KANTQYVVLFDNI------------LHRVRFAKFLTILSQEF 105
++P P A Q D++ +HR+RF K++ + ++
Sbjct: 328 EYLMPKEKKPGTPAKIPTTAQLQQAPTLDDLSDSLYSANVSYAIHRLRFTKYIVFIREKL 387
Query: 106 DQQCVELVQGLLEHGRLTLKQMFDRAKSSEKE--GNLVD-LD-SLRETLVKLVTAHYVER 161
L++ L+++GRLT++ + +++ + K+ GN D L+ E +LV H++ +
Sbjct: 388 GDAAAILLEELMDNGRLTMEAVVNQSATYTKQRTGNFDDDLNRQFEEVFSQLVVEHFIMK 447
Query: 162 CPAS---------------------------------EPLLMP----------------- 171
P +P +P
Sbjct: 448 APNPKPILGDEDEIKNAAKDAKKASTTLSKQQQQLLHDPFALPSSLLKKTKPADTNIISN 507
Query: 172 ----ISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD------ 221
I+ EE P RKKG+ +A A+R V + E D
Sbjct: 508 RPVAITPEEDPRRKKGAAGGLASKT-TMKTTSSTKATSKSGAVRKRKVDDDEDDESLPDV 566
Query: 222 --VGEKE----KNSNNVTPGEKRK----HDVLELDECGVA---DEQSVVYRANFEGFIRR 268
V E N ++ P ++R ++V+ +E A +E+ +++R N++ FI
Sbjct: 567 LLVSESAPVDIPNDGDLQPWKRRAVENVYNVVSSEEQNQALQSEEKKILWRINYDQFIIE 626
Query: 269 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 328
+ C + V++ L+ AA + +AM+ + K + N+ SSI+ E I E +
Sbjct: 627 FKLLACYEFVQSKLNHQAALIFNAMVNICKKSIKLNQENNT-----SSIFTEDILKEYNK 681
Query: 329 NMT--LDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRI 386
N+ D + ++ L + A+ S II Q++ S+ G Y++
Sbjct: 682 NVVDESDRIDGKILD-NYLPLMQATRPS-------IITRMQSQSKSSLAD---GGGVYQV 730
Query: 387 FRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 446
+ +L+ + + + ++ ++ P+ D + AR F L+ V
Sbjct: 731 N--IGNISAVLKQKMMMEQSIIKLQEVPR-----SSDHF---------AAR--TFYLFFV 772
Query: 447 NRQILWKHVLDEMFHAALNLSLRVSYEL----DREKELLNLPADKRTGPLQDRYNRIRKV 502
+ + + ++D+++ A N R+ EL D K++ +P ++ + +++++
Sbjct: 773 DYPNVSQMLIDDIYKAVYNCRERLRSELQPHEDMVKKMETIPEEQLSNDQTKLLRKVQRM 832
Query: 503 RILLESSQMKLDDAILLFHDF 523
+LE+ M LD+ +L+ F
Sbjct: 833 TEILETMVMNLDNDLLILSSF 853
>gi|345496353|ref|XP_001603173.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Nasonia vitripennis]
Length = 500
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 97/484 (20%), Positives = 209/484 (43%), Gaps = 78/484 (16%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V + L + GP T ++ +L ++K +L VLI+ V TE+
Sbjct: 12 ILLEHFGPIVEQTASDLFQHGPRTLGQMRSTIKLPISKIKESLCVLIKFGIVFYEQTER- 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
Y + D I+ +R+ +++ + + +++ +L++G
Sbjct: 71 -----GLIYNLDTDKIITILRYPRYMYFVENCCGNEAEMMLEEVLKNG------------ 113
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
D+ + +VK T +E+ P P R+ K E
Sbjct: 114 ----------YDTASQIIVK--TYKKLEQFP--------------PERRSSVPVLKDKFE 147
Query: 193 PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVAD 252
+V+ M ++ ++++V +D + S N+ K + + +E A
Sbjct: 148 ------LLVKNQFLMRSLCSDILSDVPTDKPDFSMPSLNI----KALTRLTQGNETEPAG 197
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML-----QATSSAEKKVKTK 307
+ ++ ++ N + F + LR + + + +DD A ++ +L + S A+
Sbjct: 198 DSNIYWKVNIDRFTQDLRDQILVKSIMNRIDDSAGELMRQLLYLMYLRTASWAD------ 251
Query: 308 NSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--FVDASSDS----YSIDFEK 361
S+P+ ++ I + + K+ L H+ L + E S F+ DS YS++ ++
Sbjct: 252 TSIPIPVTEIKDAMKKNFPS---ILPHLDQYLRIIEEDSSQFIQRVGDSGGGQYSVNMKE 308
Query: 362 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
+E+VV +R+G A RIFRL+ +S + +E +KI+ + K+A + +KL
Sbjct: 309 AFHQLAWAVLENVVMERFGSKAARIFRLI-RSHKYIEQEKINQIAMIPAKEAKILTFKLL 367
Query: 422 KDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
++ +L + +L V+ A F L+ ++ + + ++ +HA N+ R +E+ K
Sbjct: 368 EENFLQIHELKKAGVSTAPTKIFFLFHIDLNQVVRMTIEHCYHALYNVIQRREHEMTSNK 427
Query: 479 ELLN 482
+++
Sbjct: 428 RIID 431
>gi|403307951|ref|XP_003944445.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Saimiri
boliviensis boliviensis]
Length = 463
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 256 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLS 315
+ ++AN + F + R + + V +D ++ ++ ML+ + ++ T +S P +
Sbjct: 162 IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTSSSAPFTQP 216
Query: 316 SIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFEKIIEIAQN 368
E+ +S G N++ + L L + L FV S DS Y I+ K +
Sbjct: 217 LSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLAT 276
Query: 369 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428
+ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+ + ++ +
Sbjct: 277 ATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKMLSENFISL 335
Query: 429 EKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+++ T A F L+ VN + +L + + NL R +E K LL
Sbjct: 336 QEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLL 390
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 50 QVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQC 109
QVK AL VL+Q N V ++ + + +Y +L +R+ +++ +
Sbjct: 2 QVKKALCVLVQHNLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTG 56
Query: 110 VELVQGLLEHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 164
+V+ LL +G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+
Sbjct: 57 ELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 115
>gi|325181778|emb|CCA16234.1| PREDICTED: similar to Polymerase (RNA) III (DNA directed)
polypeptide C (62kD) putative [Albugo laibachii Nc14]
Length = 619
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 125/616 (20%), Positives = 250/616 (40%), Gaps = 111/616 (18%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRY-------TELSDEQVKNALLVLIQQNC 63
+++I + FG + + +LR L + Y T++S ++K +LL L+Q N
Sbjct: 12 LNIIESDFGQTAKLIAQGILRSDGLKLPGIIEYVQRTVKPTQISMSEIKCSLLKLLQHNM 71
Query: 64 VQ----AFTT-----EQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 114
+ A TT EQ +N Y + +L+R+ F +F+ + ++F +++
Sbjct: 72 LTFKPVAPTTNKKKSEQMSHTTSNACYYIDISEVLYRLHFPRFIDLAKKKFGDAGEIIME 131
Query: 115 GLLEHGRLTLKQM-----FDRAKSSEKEGNLVDLDSLRE------------TLVKLVTAH 157
+L +GR+ + + + A+S K+ N D S+ E V++
Sbjct: 132 EILVNGRVRMDESIELMSYRLAESRLKKENSEDASSISERELQDSRELVNFNFVEMAKNR 191
Query: 158 YVERC---------PASEPLLMPISEEEGPARKKGSK-------SAKKIGEPETI----- 196
Y+ R S+ + + E+ G ++G+ S + + + I
Sbjct: 192 YISRVHPVKMTLEQQKSKSIDLMAEEQSGNKNQRGANNMIKSEISTESLADEHGIAVRVK 251
Query: 197 --EQQVVEAALPMEAMRF---SVVTNVESDVGEKEKNSNNVTPGEKR----------KHD 241
++ V + LP+E M + VESD E N P +KR KH
Sbjct: 252 KEKKNVRGSNLPVELMMLLESQDMAMVESDEAEFVGTVN--PPAKKRSRLSKRAKLPKHG 309
Query: 242 VLELDECGVADEQS--------VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 293
AD QS ++R + +R LRH C+ +++ A ++SAM
Sbjct: 310 ATPYHTQTKADNQSNSEIDEKTPIWRCGTDQLLRELRHDACVRFAMENVNHVAGVIVSAM 369
Query: 294 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL--------GEL 345
L + S E++ S P+S IY+ +A D R L L G +
Sbjct: 370 LSHSMSHERESNEPTSHPMSAREIYKVDEVKQALPKEIKDTWRLLLNYLAVMVRDKSGMV 429
Query: 346 SFVDA-SSDS----------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
+ V A +DS Y + + I + + + + + ++G + RI RL+ +
Sbjct: 430 TRVGAEKADSATTQGGDGGQYVVHMKNITDFLKQATMHAYIQDKFGVQSARIVRLILEK- 488
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLL--WKVNRQILW 452
R LE I + + ++ + +Y L+ D ++ ++++ + W VN +
Sbjct: 489 RQLEQKSIGELALLPLNESRRRVYDLYSDKFIHLQEIPKRSDHNPVHTMYTWSVNTFHIE 548
Query: 453 KHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQD-----RYNRIRKVRILLE 507
+ + + + + L R + + KEL+ R+ L + +++++ + L+
Sbjct: 549 RVIRERVQDSICKLRSRRDFIANDNKELI-----ARSNQLVEENDLEKFDKLSRSLDRLD 603
Query: 508 SSQMKLDDAILLFHDF 523
S ++LD+ ++L+ DF
Sbjct: 604 RSLLQLDENLMLYRDF 619
>gi|66828367|ref|XP_647538.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74859265|sp|Q55FJ5.1|RPC3_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|60475558|gb|EAL73493.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 666
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGP----LTRQNVKRYTELSDEQVKNALLVLIQ 60
Y K A+ ++ FGD V KV E L+++G + Q++ L+ +++K LLVLIQ
Sbjct: 2 YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61
Query: 61 QNCVQ------AFTTEQ-----PDGP-KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ 108
N V T ++ P P +++ Y + N +HR+RF KF+ + +
Sbjct: 62 HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDE 121
Query: 109 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSL----RETLVKLVTAHYVERCPA 164
+++ L++HGRL + + +A ++ D D + +T KL+ ++ R P
Sbjct: 122 AAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRAPR 181
Query: 165 SEPLLMPISEEEGPARKKGSKSAKK 189
P+S++E SK AKK
Sbjct: 182 PR----PVSDQE--TSNALSKEAKK 200
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 112/258 (43%), Gaps = 27/258 (10%)
Query: 245 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 304
+D+ + DE V++ N+E FI + K C D V + + + +AM++ K+
Sbjct: 369 MDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVKLC----KRS 424
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS---------- 354
N L+ S +Y E I E R++ L LS + AS S
Sbjct: 425 IRSNQDSLT-SCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMVSKSK 483
Query: 355 ---------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 405
Y ++ II I + + VES++ +++G + R+F+LL LLE +I++
Sbjct: 484 QSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLLLIKN-LLEPKQIAEL 542
Query: 406 TFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAA 463
+ + +L+ + + + ++++ + F L+ V+ + +++F A
Sbjct: 543 AMIPPNECKALLFNMMQKNIIRLQEIPRSSDHFANRTFYLFFVDLPTIIATFTEDIFKAI 602
Query: 464 LNLSLRVSYELDREKELL 481
N R+ EL+ K+ L
Sbjct: 603 YNTRERLKSELEPHKDAL 620
>gi|119591840|gb|EAW71434.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_a [Homo sapiens]
Length = 319
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 143/325 (44%), Gaps = 38/325 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V ++ +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-SYQVHK- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G+LT+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + T V+L H+V+RCP+ +P +E P + +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPAPTL- 180
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 247
V+ + S++ G++ ++S+ GE K K D
Sbjct: 181 -----------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKYTTDN 224
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 225 KEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTS 279
Query: 308 NSVPLSLSSIYEEVIKS-EAGRNMT 331
+S P + E+ +S G N++
Sbjct: 280 SSAPFTQPLSSNEIFRSLPVGYNIS 304
>gi|440297472|gb|ELP90166.1| DNA-directed RNA polymerase III subunit RPC3, putative [Entamoeba
invadens IP1]
Length = 493
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 205/485 (42%), Gaps = 65/485 (13%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
+ +I+N FG+ V +V LL P T ++ R T+ +V ALLVL+ ++ ++ +
Sbjct: 11 IQIISNQFGEFVGRVSRELLLH-PTTIFDLWRRTKFPYSRVYEALLVLLHHGILR-YSKD 68
Query: 71 QPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 130
+P + + +L +R F+ ++ +F + LL +G L ++
Sbjct: 69 EPMVCSIDQ------NRVLFSLRHPHFVALMQVKFGDLAKSISMTLLSYGMLNFDDLYAV 122
Query: 131 AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKI 190
+S E E +D +++T LV A Y+ R + L + PA S S K
Sbjct: 123 IQSKEPE---LDRKEVKKTFDDLVKAKYIMRVNKNISDLAQLERTSTPA---PSFSIMKQ 176
Query: 191 GEPETIEQQV-----VEAALPMEAMRFSV-VTNVESDVGEKEKNSNNVTPGEKRKHDVLE 244
+ + + + +E +P + M+ V + N+ S + ++ N +V P
Sbjct: 177 NDGQKKKGRKKSKAEIEKPIP-KKMKAGVDIKNINSPLDQE--NQEDVEP---------- 223
Query: 245 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 304
V+ N E + + ++ D+ A +++ M + ++ +
Sbjct: 224 ------------VWMVNIEVYNKENILSKILEMATKKFDEKAGPIINKMWELSACGK--- 268
Query: 305 KTKNSVPLSLSSIYEEVIK--SEAGRN----MTLDHVRASLVQLGELSFVDASSDSYSID 358
P+ + + + +I+ E R MT D + S V A ++SY +
Sbjct: 269 -----TPVDFAVLCQNLIELPPETVRKYLEMMTRDE---PFIVAKNQSAVVAETNSYKLQ 320
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
E + + +ES +S RYG A +FR+L K +L +I+D + + IL+
Sbjct: 321 VEAATAFLKGQLIESTLSSRYGVLAANVFRVL-KMKHVLTDSQIADLLIGDIDNIRGILF 379
Query: 419 KLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
KL++ G++ +++ + R ++ + +W VN +L E A +N + R E+
Sbjct: 380 KLFQAGFINGQEVPRSHLRGGKNAYFMWSVNFSQTNAILLRETAKAIMNTTERYRMEISM 439
Query: 477 EKELL 481
+ EL+
Sbjct: 440 KAELI 444
>gi|357609201|gb|EHJ66344.1| putative DNA-directed RNA polymerase III, 62-kS-subunit [Danaus
plexippus]
Length = 497
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 108/488 (22%), Positives = 200/488 (40%), Gaps = 92/488 (18%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ +FG++V KV L G + + T L QV +L L++ F
Sbjct: 11 QILNRYFGEIVEKVGNDLFMYGCKPMGMIIKSTGLPRTQVIESLRTLLK------FDLAT 64
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT----LKQM 127
+ Y + +NIL +R+ ++L + ++ + LV+ LL+ T + +
Sbjct: 65 FEAKDVIVDYKLQPENILLLIRYPRYLLQMKTKYGSEAEMLVEELLQQASCTATVLIVSV 124
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASE-----PLLMPISEEEGPARKK 182
++ K +KE NL ++ L++T + L TA Y+++ P +E P+L+P++
Sbjct: 125 MNKYKD-DKEKNL-NIVKLKDTFISLATAGYIQQAPVAEINNEIPVLVPVA--------- 173
Query: 183 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 242
TI + +V + N NNV+
Sbjct: 174 ------------TIVPDL----------------DVRELINAMNSNLNNVS--------- 196
Query: 243 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 302
++ ++ N++ F R + I V +DD A +L ML+
Sbjct: 197 -----------DNIYWKVNYDRFHLDFRDEVMIKAVTRRIDDNAGELLKLMLEQMY-LSS 244
Query: 303 KVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE-LSFVDASSDSYSIDFEK 361
+S P+ L+ + + G NM +HV L + E F+ + D+ +
Sbjct: 245 SSWASDSSPVPLTDLKDGC--QRIGENMK-NHVEQYLRVIEESTGFIRRTGDAGGGQYSV 301
Query: 362 IIEIAQNEEVESV----VSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
I+ A + VE+V V++R G A RIFRL+ +S + LE D I + K+ ++
Sbjct: 302 RIQHALIQLVEAVCDHTVTERLGGKAARIFRLI-RSKKYLEEDDIQKNAMLPNKECKELT 360
Query: 418 YKLWKDGYL---LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
YKL ++ ++ M K G L+ V + HV+ +M + +L+ + VS
Sbjct: 361 YKLLEEHFISVQPMRKTASAGGMAKAIYLYHVKLHDV-AHVVRDMCYRSLHNVMSVS--- 416
Query: 475 DREKELLN 482
R + +LN
Sbjct: 417 -RHRRVLN 423
>gi|355389069|gb|AER62477.1| hypothetical protein [Hordeum marinum subsp. marinum]
Length = 138
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 312
E V++R NFE FI L+ K C D + L G + + +A+ + K NSV
Sbjct: 15 ENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEASLTD----KDTNSVTS 70
Query: 313 SLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVE 372
S+ I E++ + E G M++ ++ L +L + + + ++ D K+IE +NEE+E
Sbjct: 71 SIDGILEKLGQKEGGAAMSIGQIKPVL---EDLQCITSPGEEFTFDLRKMIEACRNEEIE 127
Query: 373 SVVSKRYGRDA 383
S+V K+YG++A
Sbjct: 128 SLVKKKYGQEA 138
>gi|393225849|gb|EJD33728.1| hypothetical protein AURDEDRAFT_177195 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 37/305 (12%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+E G K V +I HFG L A++ LL +G L+ + R L + V+ A+LVL+Q N
Sbjct: 4 SESG-KLCVQIIHEHFGPLTAQIAAVLLHRGRLSMPQLARELGLKSQTVRAAVLVLVQHN 62
Query: 63 CV-QAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ A T ++ + + N D + R+RF ++++ + F Q+ E+V LL+HG+
Sbjct: 63 ILWHAETDDRTEVMEIN------IDECIARLRFGHYVSLAREIFGQEASEIVAILLDHGK 116
Query: 122 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER-------CPASEPLLMPISE 174
L L + R S+ + V + + KL+++ +++ CP + L+
Sbjct: 117 LRLPDILSRLLVSKPKEQAV----YTQMVHKLISSTHLKPSTVLSHICPRDK--LINYEA 170
Query: 175 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 234
+E +K SAK I A + R +G K K + P
Sbjct: 171 DELKKKKTAIISAKDI-----------RGAKDLAVARLRKEEEEAEKIGFKRK-AKEALP 218
Query: 235 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 294
G K ++E + V DE V +R N F +R+ + +D AA V+ A L
Sbjct: 219 GRASKKQIVEEE---VIDED-VHFRVNHSKFNVHIRNNLIVAAAAERYNDAAAVVIRATL 274
Query: 295 QATSS 299
+A +
Sbjct: 275 KAAEA 279
>gi|189236566|ref|XP_975600.2| PREDICTED: similar to DNA-directed RNA polymerase III,
62-kS-subunit, putative [Tribolium castaneum]
Length = 475
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/480 (20%), Positives = 194/480 (40%), Gaps = 89/480 (18%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +YG ++ ++ FG +V KV L + G + +K++T+L +VK AL +LI+
Sbjct: 1 MSIQYGRVVSL-ILLERFGPVVEKVGTYLFQYGTVPLLYIKKHTDLPISKVKEALCILIK 59
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
V FT P+ + Y + + +L +R+AK++ ++ ++F +C +++ LL+
Sbjct: 60 YRLV-TFT---PNRNENVANYTLQHERVLLMLRYAKYINLIKKKFGTECELIMEELLQRS 115
Query: 121 RLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPAR 180
T ++ + + L++L P S E+ P
Sbjct: 116 YWTASEL------------------ILKYLIRL-----------------PYSMEDKPVP 140
Query: 181 KKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH 240
K ++ P TI+ F + V+S+ K
Sbjct: 141 SLVIKETEQFS-PPTID--------------FKQIALVQSN-----------------KA 168
Query: 241 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS-S 299
V L + GV + NF+ F + +R K ++ D+ A + +LQ
Sbjct: 169 PVDSLPDQGVY------WTVNFDRFHQDMRDKLIVNAFIKKFDENAGEFVRLLLQQMYIR 222
Query: 300 AEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV----DASSDSY 355
+ + N VP+ ++++ +A L + L + +A S+
Sbjct: 223 TQPWAEVSNPVPIVE---IRDLVRKQATHQHLLAFFDQYVNVLDSSKLIRQSGEAGGGSF 279
Query: 356 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 415
I ++ E VE +V +++ A RIFRL+ KS + +E D+I + K+A +
Sbjct: 280 QIFLKETFTQFAWETVEQIVLEKFDTKAARIFRLV-KSKQYIEPDQIQQLAMIPAKEAKR 338
Query: 416 ILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
+ Y+L ++ +L ++ L + F L+ N + + L+ + N+ R ++E
Sbjct: 339 LSYQLLEENFLQVQDLKKSTSNGPNKSFTLFYTNLDQIVRMTLELCYKTLFNIMTRKNHE 398
>gi|383855772|ref|XP_003703384.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Megachile rotundata]
Length = 511
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 116/249 (46%), Gaps = 24/249 (9%)
Query: 247 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML-----QATSSAE 301
+CG + + + NF+ F + LR + + + LD+ A ++ +L + S A+
Sbjct: 194 DCG---DDKIYWEVNFDRFTQDLRDQIIVSAMHKRLDENAGELMRQLLFLMYLRTASWAD 250
Query: 302 KKVKTKNSVPLSLSSIYEEVIK-SEAGRNMTLDHVRASLVQLGELSFV----DASSDSYS 356
S P+ L+ I + V K + LD L++ FV D+ YS
Sbjct: 251 ------TSNPIPLTEIKDAVKKINYPSLTQYLDQY-LRLIEEDSSQFVKRVGDSGGGQYS 303
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
I+ ++ +E++V +R+G A RIFRL+ + + +E ++I + K+A +
Sbjct: 304 INMKEAFSQLAWTTLENIVMERFGSKAARIFRLV-RDRKYIEQERIQQLAMIPAKEAKHL 362
Query: 417 LYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
Y L ++ YL M++L V+ A F L+ ++ ++ + ++ +HA N R YE
Sbjct: 363 TYTLLQENYLQMQELKKPGVSTAPIKTFFLFHIDLNMVVRMEVEHCYHALYNTMQRREYE 422
Query: 474 LDREKELLN 482
+ K +++
Sbjct: 423 ISSNKRMID 431
>gi|298707347|emb|CBJ29991.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 324
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 136/290 (46%), Gaps = 22/290 (7%)
Query: 255 SVVYRANFEGFIRRLRHKGCIDHVRAHLDDG--AANVLSAMLQATSSAEKKVKTKNSVPL 312
SV+++ F+ F R R+ + V+ A V+ ML +S E+KV + S +
Sbjct: 36 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASI 95
Query: 313 SLSSIYEEVIKSEAGRNMT-----------LDHVRASLVQLGELSFVDASSDS----YSI 357
S +++++ ++ N+T + + A L + SD+ Y +
Sbjct: 96 SARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVV 155
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
+ K+++ + V+ RYG++ RI +L ++ + L+ ++ + + DA + L
Sbjct: 156 NMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQN-KYLDQQQVGEMAMIPPSDARERL 214
Query: 418 YKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
Y+L +D + ++++ R + F LW + + + VL+ ++ A LN+ LR +
Sbjct: 215 YRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYS 274
Query: 476 REKELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+K L A R ++R +++R+ L+++ ++LD+ ++ F+ F
Sbjct: 275 NDKALFIHDAAARLSNDAERERLDQVRRSLDRLDTALLRLDENLMFFNTF 324
>gi|194742686|ref|XP_001953832.1| GF17964 [Drosophila ananassae]
gi|190626869|gb|EDV42393.1| GF17964 [Drosophila ananassae]
Length = 522
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 94/479 (19%), Positives = 201/479 (41%), Gaps = 58/479 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL + + T+LS ++V AL VL++ V F+ Q
Sbjct: 12 ILEQCFGKVVQLVADCLFSATTRSLSQIASSTKLSRKEVALALAVLVKYRLVD-FSASQQ 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ A +Y + +++L +R+ +++ ++ ++ + + L+ G T + +
Sbjct: 71 NPFLA--EYALRREDVLCLLRYPRYVHLVQAKYGNVGASIAEELINSGSDTATGILVKC- 127
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
+E E +S R + ++++T HY+ + +P L+ E + K +
Sbjct: 128 LTEGENKSESAESYRNSFLQMITDHYIIK----KPELLSSDETDEVIPKFETNECDYYRH 183
Query: 193 PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVAD 252
P I+ Q++ + + E+ V E A
Sbjct: 184 P-NIDLQLL-----------AKIRKGEATVSE--------------------------AK 205
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 312
+ +V+ N++ F + R ID + L + AA +L+ + + K S +
Sbjct: 206 DGHMVWTLNYDRFHQDFRDSIMIDAIERKLGENAAECFRFILKIMYNTTDPWQRKLSNQV 265
Query: 313 SLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELSFV----DASSDSYSIDFEKIIEIA 366
+ I + + K ++ LD SL+ L F+ D + +D EK E
Sbjct: 266 TFVEIKQTIEKKSNNLDLMKYLDQY-ISLITDDSLGFLRRVGDMGGGLFVVDMEKSFESL 324
Query: 367 QNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL 426
VESV+++R+G A RIFR++ + + +E + + + K+A + Y L+++ ++
Sbjct: 325 AFACVESVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKSLAYNLFQEQFI 383
Query: 427 LMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
++ + G + F L++V + + +LD + + N R ++E + K L+
Sbjct: 384 HVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDVSYKSLYNTIERSNFEKNEHKGLI 442
>gi|353235115|emb|CCA67132.1| hypothetical protein PIIN_00966 [Piriformospora indica DSM 11827]
Length = 530
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 39/306 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I +HFGD+V+ V + L G L+ + + +T+L + +L+VL Q + +
Sbjct: 12 IIKSHFGDMVSLVVQTLAAHGRLSFRELVLFTKLKPRAIAASLIVLSQHGLLWHSNVQDD 71
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ + N D L R RF KFL I + + + V +VQ +L+HGR+ Q+ +
Sbjct: 72 ERYECNV------DECLQRQRFGKFLLIANDLYGEDGVLVVQTILDHGRVRFPQLIEELP 125
Query: 133 SSEKEGNLVDL--DSLRETLVKLVTAHYVER-----CPASEPLLMPISEEEGPARKKGSK 185
E+ G L L L++ +K T + + A LLM + +
Sbjct: 126 QIER-GRLQKLVRRMLQKRFIKSTTEYLTKSRADRIADAENRLLMA----DVTTKNVAVA 180
Query: 186 SAKKIGEPET-IEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 244
SAK++ E E+QV +EA+ + E + + K K E
Sbjct: 181 SAKRLAEKRLEAEEQVAAREREVEALGLKL----------SESKATTKSMKGKDKDKEKE 230
Query: 245 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 304
+DE ++ R NF F LR+ VRA ++ AA+V+ A+L+AT EK +
Sbjct: 231 IDE-------TIWLRINFTTFNICLRNSLIESAVRARYNEPAASVMRAVLKAT---EKNI 280
Query: 305 KTKNSV 310
N +
Sbjct: 281 VGSNGI 286
>gi|195166136|ref|XP_002023891.1| GL27319 [Drosophila persimilis]
gi|194106051|gb|EDW28094.1| GL27319 [Drosophila persimilis]
Length = 522
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/482 (19%), Positives = 197/482 (40%), Gaps = 62/482 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE-Q 71
++ FG + V +CL T + T+LS ++V AL VLI V T+
Sbjct: 12 IVEQCFGKVSQSVSDCLFSATTRTLSQIASATKLSRKEVGLALSVLINFRLVNFEATKLN 71
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
P P +Y + +IL +R+ +++ ++ +++ + + L+ G T +
Sbjct: 72 PFVP----EYSLSRQDILCLLRYPRYIHMVQKKYGSIGASIAEELISAGSDTASATLTKC 127
Query: 132 KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIG 191
S E + +S R ++++T HY+ I
Sbjct: 128 LSDE-DTRADSAESYRNIFLQMITDHYI------------------------------IK 156
Query: 192 EPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-NVTPGEKRKHDVLELDECGV 250
PE I + + LP ES+ + ++ N ++ EK + L E G
Sbjct: 157 RPELILSEEQDEVLP----------KFESNECDYFRHPNVDLQLIEKIRRGEATLAEAG- 205
Query: 251 ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSV 310
+ ++++ N++ F + R ID + L + A+ +L+ + K S
Sbjct: 206 --DSNMIWNVNYDRFHQDFRDAIMIDAIERKLGENASECFRFILKIMYKTTDPWQRKLSN 263
Query: 311 PLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE--LSFV----DASSDSYSIDFEKIIE 364
++ I + + K ++ + H+ + L + L F+ D Y +D E +
Sbjct: 264 QITFVDIKQTIEKKSNNLDL-MKHLDQYITLLTDDSLGFLRRVGDMGGGLYVVDMEHAFQ 322
Query: 365 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 424
+ESV+++R+G A RIFR++ + + +E + + + K+A + Y L++D
Sbjct: 323 SLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLFQDQ 381
Query: 425 YLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL 480
++ ++ + G + F L+++ + + +LD + + N R ++E + L
Sbjct: 382 FIHVKAIKKAGGGGNGLAKAFYLFQIKEKDSVRMLLDVCYKSLYNTIERSNFEKNEHTGL 441
Query: 481 LN 482
++
Sbjct: 442 ID 443
>gi|125773573|ref|XP_001358045.1| GA11520 [Drosophila pseudoobscura pseudoobscura]
gi|54637780|gb|EAL27182.1| GA11520 [Drosophila pseudoobscura pseudoobscura]
Length = 522
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 92/482 (19%), Positives = 198/482 (41%), Gaps = 62/482 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE-Q 71
++ FG + V +CL T + T+LS ++V AL VLI V T+
Sbjct: 12 IVEQCFGKVSQSVSDCLFSATTRTLSQIASATKLSRKEVGLALSVLINFRLVNFEATKLN 71
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
P P +Y + +IL +R+ +++ ++ +++ + + L+ G T +
Sbjct: 72 PFVP----EYSLSRQDILCLLRYPRYIHMVQKKYGSIGASIAEELISAGSDTASATLIKC 127
Query: 132 KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIG 191
SE++ +S R ++++T HY+ I
Sbjct: 128 -LSEEDTRADSAESYRNIFLQMITDHYI------------------------------IK 156
Query: 192 EPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-NVTPGEKRKHDVLELDECGV 250
PE I + + LP ES+ + ++ N ++ EK + L E G
Sbjct: 157 RPELILSEEQDEVLP----------KFESNECDYFRHPNVDLQLIEKIRRGEATLAEAG- 205
Query: 251 ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSV 310
+ ++++ N++ F + R ID + L + A+ +L+ + K S
Sbjct: 206 --DSNMIWNVNYDRFHQDFRDAIMIDAIERKLGENASECFRFILKIMYKTTDPWQRKLSN 263
Query: 311 PLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE--LSFV----DASSDSYSIDFEKIIE 364
++ I + + K ++ + H+ + L + L F+ D Y +D E +
Sbjct: 264 QITFVDIKQTIEKKSNNLDL-MKHLDQYITLLTDDSLGFLRRVGDMGGGLYVVDMEHAFQ 322
Query: 365 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 424
+ESV+++R+G A RIFR++ + + +E + + + K+A + Y L++D
Sbjct: 323 SLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLFQDQ 381
Query: 425 YLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL 480
++ ++ + G + F L+++ + + +LD + + N R ++E + L
Sbjct: 382 FIHVKAIKKAGGGGNGLAKAFYLFQIKEKDSVRMLLDVCYKSLYNTIERSNFEKNEHTGL 441
Query: 481 LN 482
++
Sbjct: 442 ID 443
>gi|195500509|ref|XP_002097404.1| GE26202 [Drosophila yakuba]
gi|194183505|gb|EDW97116.1| GE26202 [Drosophila yakuba]
Length = 522
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 98/486 (20%), Positives = 198/486 (40%), Gaps = 72/486 (14%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+ S ++V AL VL++ V ++Q
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKFSRKEVAFALAVLVKFRLVDFAASKQ- 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
P +Y + +++L +R+ +++ ++ ++ + + L+ G T + +
Sbjct: 71 -NPFL-AEYALRREDVLCLLRYPRYVHLVQTKYGNVGASIAEELINSGSDTATGILVKC- 127
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
+E E +S R T ++++T HY+ + P E L+ +E P K +
Sbjct: 128 LAENENKTESPESYRNTFLQMITDHYIIKRP--ELLVGDDQDENVP--KFETNECDFFRH 183
Query: 193 PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVAD 252
P I+ Q++ EA T E R
Sbjct: 184 P-NIDLQLLAKIHKGEA-----------------------TLAEAR-------------- 205
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKVKTKN 308
+ +V+ N++ F + R +D + L + AA +L M T E+K
Sbjct: 206 DSHMVWNLNYDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERK----- 260
Query: 309 SVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSYSIDF 359
LS + E+ ++ ++ LD ++ SL+ L F D Y +D
Sbjct: 261 ---LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDM 317
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
E E E V+++R+G A RIFR++ +S + +E + + + K+A + Y
Sbjct: 318 EHAFESLAFACAECVITERFGSKAARIFRVI-RSKKYIEQEDLQKEAMIPSKEAKSLAYN 376
Query: 420 LWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
L+++ ++ ++ + G + F L++V + + +LD + + N R ++E +
Sbjct: 377 LFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKN 436
Query: 476 REKELL 481
K L+
Sbjct: 437 EHKGLI 442
>gi|195329508|ref|XP_002031452.1| GM24041 [Drosophila sechellia]
gi|194120395|gb|EDW42438.1| GM24041 [Drosophila sechellia]
Length = 522
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 102/490 (20%), Positives = 199/490 (40%), Gaps = 78/490 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ V FT
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALAVLVKFRLVD-FT---- 66
Query: 73 DGPKAN---TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 129
KAN +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 67 -ASKANPFLAEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGILL 125
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
+ +E E +S R T ++++T HY+ + P LL+ G +
Sbjct: 126 KC-LAENENKAESPESYRNTFLEMITDHYIIKRP---ELLV------------GDDQDEN 169
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
+ + ET E F N++ + K + K H V L
Sbjct: 170 VPKFETNE------------CDFFRHPNIDLQLLAKIQKGEATLAEAKDSHMVWNL---- 213
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKVK 305
N + F + R +D + L + AA +L M T E+K
Sbjct: 214 -----------NHDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERK-- 260
Query: 306 TKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSYS 356
LS + E+ ++ ++ LD ++ SL+ L F D Y
Sbjct: 261 ------LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYV 314
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+D E E VE V+++R+G A RIFR++ +S + +E + + + K+A +
Sbjct: 315 VDMEHAFESLAFACVECVITERFGSKAARIFRVI-RSKKYIEQEDLQKEAMIPSKEAKSL 373
Query: 417 LYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
Y L+++ ++ ++ + G + F L++V + + +LD + + N R ++
Sbjct: 374 AYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDASYKSLYNTIERSNF 433
Query: 473 ELDREKELLN 482
E + K L++
Sbjct: 434 EKNEHKGLID 443
>gi|198429990|ref|XP_002130318.1| PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC3
(RNA polymerase III subunit C3) (DNA-directed RNA
polymerase III subunit C) [Ciona intestinalis]
Length = 521
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 104/505 (20%), Positives = 196/505 (38%), Gaps = 65/505 (12%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A ++ H+G + A V LL+ G + + L +QV+ AL +LIQ +
Sbjct: 9 AYELLQEHYGKIAADVASFLLQNGWQPLRYIALKANLKLDQVRKALCLLIQHKLAKFHVR 68
Query: 70 EQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----TLK 125
+ + +Y + +N+L + KF+ + + +V+ L+HG + +K
Sbjct: 69 K-----RKIVEYAINIENVLSILFHPKFIYTVKLLYGDAAELIVEEALQHGIILMSTAIK 123
Query: 126 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 185
+ DR G + + LV H+++R
Sbjct: 124 NVADRLPDENGSGK------IEKAFKDLVQTHFLQR------------------------ 153
Query: 186 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR---KHDV 242
+ E E+ +V EA + + T E + K + + P KR +H+
Sbjct: 154 --EPEVEKNEEEEYIVPIFTQNEADLYRLPTLSEESLKRKRSDDGSDEPKAKRLKSEHET 211
Query: 243 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 302
+ V ++ V + N F + R + + V ++ AML+ S
Sbjct: 212 PSM-PTDVVEDDGVYWSVNISRFQQYFRDQSIVASVTQRFGTPCGEIVRAMLR-ISEVTT 269
Query: 303 KVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLV-------QLGELSFVDASSDSY 355
+++ P+S + I + + + ++HV L Q+ +L S Y
Sbjct: 270 PANAQSTQPISSAEIARSL-----PQKLPMEHVEQHLKLLSNDEDQIVQLFDDSGSGGLY 324
Query: 356 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 415
++ + V S V +RYG A RIFRLL + LE ++ + + K+A
Sbjct: 325 VVNLKNSALALATATVLSYVQQRYGSKACRIFRLLMLK-KHLEQKQVEEFAMIPPKEAKG 383
Query: 416 ILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 473
LY + + ++M+++ T A F L+ VN Q L + +L + + NL R ++
Sbjct: 384 YLYHMLAENMVIMQEVPRTPDHAPARTFYLYSVNIQRLSRILLVKCYKTCTNLMTRHNHL 443
Query: 474 LDREKELLN----LPADKRTGPLQD 494
+ K +L+ + A K T P D
Sbjct: 444 IKTNKRILDKEERITAIKATLPDAD 468
>gi|195394880|ref|XP_002056067.1| GJ10734 [Drosophila virilis]
gi|194142776|gb|EDW59179.1| GJ10734 [Drosophila virilis]
Length = 522
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/479 (19%), Positives = 189/479 (39%), Gaps = 58/479 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ- 71
++ FG +V V +CL T + T S ++V AL VLI+ V ++
Sbjct: 12 ILEQCFGKVVQSVADCLFSATTRTLSQIVNSTHFSRKEVMLALAVLIKFRLVNFEPSKNN 71
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
P P +Y + ++++ +R+++++ ++ ++ + + LL G T + +
Sbjct: 72 PFLP----EYSLRREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNAGSETATGLLLKC 127
Query: 132 KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIG 191
S+ E ++ R+T +K++ HY+ + P LM +E E + +
Sbjct: 128 -LSDGENKAESAETYRDTFIKMIADHYIIKIPE----LMTDNESEDAVPRFQTNECD--- 179
Query: 192 EPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVA 251
F V N++ + + + GE L+
Sbjct: 180 --------------------FFVPPNIDLHLLAQ------IRKGEATLSKALD------- 206
Query: 252 DEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVP 311
++V+ N++ F + R + L + AA S +L + + K S
Sbjct: 207 --GAIVWSLNYDRFHQEFRDDIMRLAMERKLGENAAECFSFILNLIYNTTDPWQRKASNQ 264
Query: 312 LSLSSIYEEV-IKSEAGRNMTLDHVRASLVQLGELSFV----DASSDSYSIDFEKIIEIA 366
++ I + + KS M L+ L F+ D Y +D EK E
Sbjct: 265 ITFVEIKQAIERKSNNLELMKFLDQYICLITDDSLGFLRKVGDMGGGQYLVDMEKAFESL 324
Query: 367 QNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL 426
VESV+++R+G A RIFR++ + + +E + + + K+A + Y L+++ ++
Sbjct: 325 ALACVESVITERFGSKAARIFRVI-RFKKYIEQEDLQKEAMIPAKEAKSLAYNLFQEQFI 383
Query: 427 ----LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ + F L+++ + + +LD F + N R +YE K L+
Sbjct: 384 HVKVIKKPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCFKSLYNTIRRSNYEKSEHKGLI 442
>gi|195036890|ref|XP_001989901.1| GH18539 [Drosophila grimshawi]
gi|193894097|gb|EDV92963.1| GH18539 [Drosophila grimshawi]
Length = 522
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 88/479 (18%), Positives = 188/479 (39%), Gaps = 58/479 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+L+ ++V AL VLI+ V+ E
Sbjct: 12 ILEQCFGQVVQAVADCLFSATTRTLSQIVSTTQLARKEVALALAVLIKFRLVRF---EPS 68
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ +Y + ++++ +R+++++ ++ ++ + + LL G T +
Sbjct: 69 KSNQFLPEYSLKREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNSGSETATSCLLKCL 128
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
S + + ++ R T ++++ HY+ + P + +E+ K +
Sbjct: 129 S-DGDNKAESAETYRTTFIQMIADHYIIKTPE-----LVTGDEQDDCVPKFLSNECDFFV 182
Query: 193 PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVAD 252
P I+ Q++ + RK D A
Sbjct: 183 PPNIDLQLL---------------------------------AQIRKGDA----TIASAT 205
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 312
+ +V+ NF+ F + R + L + AA S +L + K S +
Sbjct: 206 DGGIVWSLNFDRFHQEFRDDIMKLAIERKLGETAAECFSFILSLIYKTTDPWQRKASNHI 265
Query: 313 SLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELSFV----DASSDSYSIDFEKIIEIA 366
+ I + + + ++ LD SL+ L F+ D Y ID E E
Sbjct: 266 TFVEIKQAIERKSNNLDLMKYLDQY-ISLITDDSLGFLRRVGDMGGGQYVIDMEHAFESL 324
Query: 367 QNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL 426
VESV+++R+G A RIFR++ + + +E + + + K+A + Y L+++ ++
Sbjct: 325 AFACVESVITERFGSKATRIFRVI-RFKKYIEQEDLQKEAMIPAKEAKSLAYNLFQEQFI 383
Query: 427 ----LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ + F L+++ + + +LD + + N R ++E + K L+
Sbjct: 384 HVKVIKKPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCYKSLYNTIRRSNFEKNEHKGLI 442
>gi|195109104|ref|XP_001999130.1| GI23238 [Drosophila mojavensis]
gi|193915724|gb|EDW14591.1| GI23238 [Drosophila mojavensis]
Length = 522
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/473 (19%), Positives = 190/473 (40%), Gaps = 56/473 (11%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
FG +V V +CL T + T + ++V AL VLI+ V + E
Sbjct: 17 FGKVVQAVADCLFSATTRTLSQIVSSTNFARKEVVLALSVLIKFRLV---SFEPSKNNPF 73
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKE 137
+Y + ++++ +R+++++ ++ ++ + + LL G T + + ++ E
Sbjct: 74 LAEYALRREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNAGSETATALLLKC-LADGE 132
Query: 138 GNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIE 197
++ R+T +K+++ H++ + P L+P E++ P+
Sbjct: 133 NKAESAETYRDTFLKMISDHFIIKLPE----LVPGDEQDEAV-------------PKFQR 175
Query: 198 QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVV 257
+ LP N++ + + + GE L+ + V
Sbjct: 176 NECDYFMLP----------NIDLKILAQ------IQKGEATLSKALD---------TACV 210
Query: 258 YRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSI 317
+ N++ F + R + L + AA S +L + + K S ++ I
Sbjct: 211 WSLNYDRFHQEFRDDIMKLAIERKLGENAAECFSFILNLVYNTTDPWQRKASNLITFVEI 270
Query: 318 YEEVIKSEAGRNMT--LDHVRASLV--QLGELSFV-DASSDSYSIDFEKIIEIAQNEEVE 372
+E+ + + LD +V LG L V D Y +D EK E VE
Sbjct: 271 KQEIERKSNNLELIKYLDQYICLIVDDSLGFLRKVGDTGGGQYQVDMEKTFESLAFACVE 330
Query: 373 SVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL----LM 428
+V+++R+G A RIFR++ + + +E + + + K+A + Y L+++ ++ +
Sbjct: 331 AVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLFQEQFIHVKVIK 389
Query: 429 EKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ F L+++ + + +LD F + N R +YE K L+
Sbjct: 390 KPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCFKSLYNTIRRSNYEKHEHKGLI 442
>gi|330792604|ref|XP_003284378.1| hypothetical protein DICPUDRAFT_45403 [Dictyostelium purpureum]
gi|325085724|gb|EGC39126.1| hypothetical protein DICPUDRAFT_45403 [Dictyostelium purpureum]
Length = 644
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 129/289 (44%), Gaps = 38/289 (13%)
Query: 221 DVGEKEKNSNNVTPGEKRKHDVL------ELDECGVADEQSVVYRANFEGFIRRLRHKGC 274
D+G+ +N+ P +K K DV E + + DE V++ N+E F+ + K C
Sbjct: 321 DIGD-----SNIQPNKKSKLDVYTVVSPQEQQQRIINDETRVLWTINYEQFVTEFKLKAC 375
Query: 275 IDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDH 334
D V + + + +AM++ K+ NS L+ S +Y E E R++
Sbjct: 376 YDFVVEKNNQQSGLLFNAMVKLC----KRSIRSNSDTLT-SCVYGENALEEYNRDLDPSK 430
Query: 335 VRASLVQLGELSFVDASSDS-------------------YSIDFEKIIEIAQNEEVESVV 375
L LS + AS S Y ++ II + + + VES++
Sbjct: 431 RMDKLQFEKYLSVMQASRPSMVTKMQTKSKQSSSSELGAYQVNVGNIIAVIKQKMVESII 490
Query: 376 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG 435
+++G + R+F+LL LLE +I+D + K+ +L+ + + + ++++ +
Sbjct: 491 KQKFGDNGLRVFKLLLIKN-LLEPKQIADLAMIPIKECKALLFNMMQKNIIRLQEVPRSS 549
Query: 436 ARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 482
+ F L+ V+ + + +++F A N R++ EL K++L+
Sbjct: 550 DHFANRTFYLFFVDLPSIIRDFTEDIFKAIYNTRERLNSELAPHKDMLD 598
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 34/218 (15%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLIQQN 62
Y K A+ ++ FGD V+KV E L+ +G + + + + + + +++K LLVLIQ N
Sbjct: 2 YEQKLAIGIVNEAFGDDVSKVFEFLVHRGKSSFKIINQALQGTVGLKRIKQCLLVLIQHN 61
Query: 63 C-------VQAFTTEQ----PDGP-KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCV 110
+ EQ P P +++ Y + N +HR+RF KF+ + +
Sbjct: 62 LATFEEFLIPLGKDEQESLTPGDPFPSDSVYEAIIVNAIHRLRFPKFINFIKVSKGDEAA 121
Query: 111 ELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRET----------LVKLVTAHYVE 160
+++ L++HGRL + + +A + + DS +T KL+ ++
Sbjct: 122 FILEELIDHGRLPMDMILKQASAYSRAA-----DSFEDTEEITKRFEDIFTKLIMDQFIM 176
Query: 161 RCPASEPL-----LMPISEEEGPARKKGSKSAKKIGEP 193
R P P+ I++E + S S KK +P
Sbjct: 177 RAPRPRPINDQDQSNAINKEAKKTKDSQSSSNKKEADP 214
>gi|21357263|ref|NP_650207.1| CG12267, isoform A [Drosophila melanogaster]
gi|320542649|ref|NP_001189212.1| CG12267, isoform B [Drosophila melanogaster]
gi|15291747|gb|AAK93142.1| LD24919p [Drosophila melanogaster]
gi|23171112|gb|AAF54828.2| CG12267, isoform A [Drosophila melanogaster]
gi|220944880|gb|ACL84983.1| CG12267-PA [synthetic construct]
gi|220954778|gb|ACL89932.1| CG12267-PA [synthetic construct]
gi|318068760|gb|ADV37303.1| CG12267, isoform B [Drosophila melanogaster]
Length = 522
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 100/489 (20%), Positives = 197/489 (40%), Gaps = 78/489 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ F
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALAVLVK------FRLVDF 65
Query: 73 DGPKAN---TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 129
KAN +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 66 AASKANPFLAEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGILL 125
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
+ +E E +S R T ++++T HY+ + P E L+ +E P K +
Sbjct: 126 KC-LAENENKAESPESYRNTFLEMITDHYIIKRP--ELLVGDDQDENVP--KFETNECDF 180
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
P I+ Q++ EA T E R
Sbjct: 181 FRHP-NIDLQLLAKIQKGEA-----------------------TLAEAR----------- 205
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKVK 305
+ +V+ N + F + R +D + L + AA +L M T E+K
Sbjct: 206 ---DSHMVWHLNHDRFHQDFRDTIMVDAIERKLGENAAECFKFILKIMYNTTDPWERK-- 260
Query: 306 TKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSYS 356
LS + E+ ++ ++ LD ++ SL+ L F D Y
Sbjct: 261 ------LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYV 314
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+D E E VE V+++R+G A RIFR++ + + +E + + + K+A +
Sbjct: 315 VDMEHAFESLAFACVECVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKSL 373
Query: 417 LYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
Y L+++ ++ ++ + G + F L++V + + +LD + + N R ++
Sbjct: 374 AYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNF 433
Query: 473 ELDREKELL 481
E + K L+
Sbjct: 434 EKNEHKGLI 442
>gi|195571401|ref|XP_002103691.1| GD18841 [Drosophila simulans]
gi|194199618|gb|EDX13194.1| GD18841 [Drosophila simulans]
Length = 522
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 97/489 (19%), Positives = 196/489 (40%), Gaps = 78/489 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ F
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALTVLVK------FRLVDF 65
Query: 73 DGPKAN---TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 129
KAN +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 66 AASKANPFLAEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGILL 125
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 189
+ +E E +S R T ++++T HY+ + P L+ +++ K +
Sbjct: 126 KC-LAENENKAESPESYRNTFLEMITDHYIIK----RPELLVGDDQDENVPKFETNECDF 180
Query: 190 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 249
P I+ Q++ EA T E R
Sbjct: 181 FRHP-NIDLQLLAKIQKGEA-----------------------TLAEAR----------- 205
Query: 250 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKVK 305
+ +V+ N + F + R +D + L + AA +L M T E+K
Sbjct: 206 ---DSHMVWNLNHDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERK-- 260
Query: 306 TKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSYS 356
LS + E+ ++ ++ LD ++ SL+ L F D Y
Sbjct: 261 ------LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYV 314
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+D E E VE V+++R+G A RIFR++ + + +E + + + K+A +
Sbjct: 315 VDMEHAFESLAFACVECVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKSL 373
Query: 417 LYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
Y L+++ ++ ++ + G + F L++V + + +LD + + N R ++
Sbjct: 374 AYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDASYKSLYNTIERSNF 433
Query: 473 ELDREKELL 481
E + K L+
Sbjct: 434 EKNEHKGLI 442
>gi|328859337|gb|EGG08446.1| hypothetical protein MELLADRAFT_84617 [Melampsora larici-populina
98AG31]
Length = 604
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV---QAFT 68
H++T +G ++ LLR+G L ++ + + L+ +++AL+ LIQQNCV + +
Sbjct: 12 HLLTTLYGHACGEIGSLLLRRGRLPFSSLVKLSSLTSHSIRSALITLIQQNCVCHSETSS 71
Query: 69 TEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 128
+ + V+ + IL R+RF K++TI+ + F + +++ +LE+G++ + Q+
Sbjct: 72 ASTSTQTNSPEYFEVIPNEILARIRFGKYITIVDELFGIESSSIIEFVLENGKIRIGQLI 131
>gi|403164986|ref|XP_003325023.2| hypothetical protein PGTG_06560 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165486|gb|EFP80604.2| hypothetical protein PGTG_06560 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 612
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 150/333 (45%), Gaps = 37/333 (11%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-----QA 66
H++T +G ++ LL +G L ++ R + L+ ++ AL+VLI QNCV
Sbjct: 14 HILTQLYGHACGEIGSILLNRGRLPFSSLLRMSCLTGNSIRAALVVLIHQNCVLHSDTSL 73
Query: 67 FTTE--QPDGPKANTQYV-VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 123
TT P+ + +Y + D IL RVRF +F+ + ++F + +V+ LL++G+L
Sbjct: 74 LTTAAGDPNPSSSGPEYFEAIPDEILTRVRFGQFVNLAYEQFGIESKLIVECLLDNGKLR 133
Query: 124 LKQMF----DRAKSSEKEGNLVDLDSLRETLVK-----------LVTAHYVERCPASEPL 168
+ Q+ ++ S K + D D L+ + VK L+ Y++ +
Sbjct: 134 VGQLVTMVCEQYYSQRKRLDETD-DGLQHSPVKMPQIVKSNVLNLLAERYLKPSHPKHSI 192
Query: 169 ----LMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGE 224
L E++ A+ G S K+I + +++QV++ E F + + G+
Sbjct: 193 NPTDLELAYEKQLIAKLPGVPSPKEI---KAVKEQVMDMMATEETQAFEEMCS----FGQ 245
Query: 225 KEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDD 284
K++ SN+ K + + ++ + D+ + R N+ F ++R+ +
Sbjct: 246 KQRASNSAQNDRKAQTKRQKTEDVSLQDDMYI--RVNYARFNMKIRNSIFEQECFRSYNL 303
Query: 285 GAANVLSAMLQATSSAEKKVKTKNSVPLSLSSI 317
A V+ AML + ++ + S P+S +I
Sbjct: 304 EAGLVMRAMLILAETKQQDLNDLVSDPISAQAI 336
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
YS++ K + V ++ ++YG +A R+ R+L GRL E ++ + KD+
Sbjct: 437 YSLELRKAL-------VSRIIREKYGIEAARVVRILMHKGRLDE-KHLAKFAMMTLKDSR 488
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
++ KL + ++++ T RQ F L+ ++ Q L ++ + + NL +R+
Sbjct: 489 ELCLKLSAGKVIELQEVPKTNDRQPSRTFYLFFIDFQKLILNLTMMIRKSQTNLIIRIDQ 548
Query: 473 ELDREKELL 481
EL + K LL
Sbjct: 549 ELKQRKNLL 557
>gi|194901712|ref|XP_001980395.1| GG18993 [Drosophila erecta]
gi|190652098|gb|EDV49353.1| GG18993 [Drosophila erecta]
Length = 522
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 93/486 (19%), Positives = 194/486 (39%), Gaps = 72/486 (14%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+ S ++V AL VL++ V ++Q
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKFSRKEVAFALAVLVKFRLVDFAASKQN 71
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+Y + +++L +R+ +++ ++ ++ + + L+ G T + +
Sbjct: 72 SFL---AEYALRREDVLCLLRYPRYVHLVQTKYGNVGASIAEELINSGSDTATGILVKC- 127
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
+E E +S R T ++++T HYV + P LM +++ K +
Sbjct: 128 LAENENKTESPESYRNTFLQMITDHYVIK----RPELMVGDDQDENVPKFETNECDFFRH 183
Query: 193 PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVAD 252
P I+ Q++ + GE D A
Sbjct: 184 P-NIDLQLLA----------------------------KIQKGEATLAD---------AR 205
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKVKTKN 308
+ +V+ N++ F + R +D + L + AA +L M T E+K
Sbjct: 206 DSHMVWNLNYDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERK----- 260
Query: 309 SVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSYSIDF 359
LS + E+ ++ ++ LD ++ SL+ L F D Y +D
Sbjct: 261 ---LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDM 317
Query: 360 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 419
E + E V+++R+G A RIFR++ + +E + + + K+A + Y
Sbjct: 318 EHAFQSLAFACAECVITERFGSKAARIFRVI-RCKVYIEQEDLQKEAMIPSKEAKSLAYN 376
Query: 420 LWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 475
L+++ ++ ++ + G + F L++V + + +LD + + N R ++E +
Sbjct: 377 LFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKN 436
Query: 476 REKELL 481
K L+
Sbjct: 437 EHKGLI 442
>gi|393906030|gb|EJD74152.1| hypothetical protein LOAG_18495 [Loa loa]
Length = 519
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/438 (20%), Positives = 177/438 (40%), Gaps = 66/438 (15%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
V ++ +HFG + A V LL + P+ Q ++ + +++ A+++L Q +Q
Sbjct: 9 CVEILEDHFGPIAAAVGSVLLNEAVPLPVIFQRLR--NQFRIPEIRRAMVILEQHGILQ- 65
Query: 67 FTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 126
FT ++ + Q + +IL VR A+ + + + + + ++ GRLT
Sbjct: 66 FTQDERQRIIYSAQVI----DILRLVRSARCSFVAKTLYGEIAEAICEEIISQGRLTCSS 121
Query: 127 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 186
R + + V ++ ++ +L +V R P E G
Sbjct: 122 CIRRVVARLE----VSINEVKTAFARLAETQFVMRYPKVESNFC------------GCPI 165
Query: 187 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 246
+K +P + ++ A +E +V K + N++ E D
Sbjct: 166 FEKHPDPFIMPDVILNA------------KKLEINVDSKSRKRKNLSNEED--------D 205
Query: 247 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA--HLDDGAANVLSAMLQATSSAEKKV 304
G ++ + N+ F R LR + ++ + + + L +L+ + ++
Sbjct: 206 PDG-----NIYWHLNYIRFERYLRDEMVVNAYESGDAVHENCVKTLRILLKIS-----EI 255
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDH--VRASLVQLGELSFV-----DASSDSYSI 357
K +S S +V+++ ++L + +L L E + D++ + I
Sbjct: 256 KADSSAAASFPISIHDVLRAANSNEVSLGKHDIEVALRLLCESGGIVRKVGDSAGGLFVI 315
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 417
DFEK I VES + +R A R+FRLL + G LE D + + +A K+
Sbjct: 316 DFEKAIATHCQRHVESAIRERLDMRAVRVFRLLMQKG-FLEEDHVEKLAMLSSTEARKLC 374
Query: 418 YKLWKDGYLLMEKLVVTG 435
Y+L + G++LM+ + T
Sbjct: 375 YQLLEQGFVLMKHVAKTN 392
>gi|308800048|ref|XP_003074805.1| Rpc3 DNA-directed RNA polymerase III 62 kDa polypeptide (RNA pol
(IC) [Ostreococcus tauri]
gi|116061345|emb|CAL52063.1| Rpc3 DNA-directed RNA polymerase III 62 kDa polypeptide (RNA pol
(IC) [Ostreococcus tauri]
Length = 390
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 366 AQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY 425
++ + VE+V+ R G A RI+R+L ++ LE +++D + V KD ILYKL K GY
Sbjct: 234 SRRKHVEAVIRARLGVQALRIYRMLGQTQ--LEQKQVADLSMVPVKDTRDILYKLLKFGY 291
Query: 426 LLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNL 483
+ M+++ T A LW+V+ ++ V E+ N+ LR+ +L ++
Sbjct: 292 VQMQEIARTNDHAPSRTNYLWRVDCTVVDAVVKRELTQTLTNIHLRLLSQLQLHCRMIQ- 350
Query: 484 PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFH 521
P+D R ++ R V +LE ++LD+ +L+F+
Sbjct: 351 PSDSRHCRKEEVS---RDVLDILELGALRLDELLLVFN 385
>gi|167382764|ref|XP_001736255.1| DNA-directed RNA polymerase III subunit RPC3 [Entamoeba dispar
SAW760]
gi|165901422|gb|EDR27505.1| DNA-directed RNA polymerase III subunit RPC3, putative [Entamoeba
dispar SAW760]
Length = 499
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/485 (19%), Positives = 198/485 (40%), Gaps = 59/485 (12%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ N FG V ++ +CLL K P T ++ R ++ AL VL+ + ++ ++ E
Sbjct: 11 VQIVENQFGKFVGQITKCLLVK-PSTIFDLWRQCHQPYSKMYEALFVLLHHSILK-YSNE 68
Query: 71 QPDGPKANTQYVVLFDN--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 128
+P ++ D IL +R + F+ ++ Q+F + E+ L+ +G L + +F
Sbjct: 69 EP--------VIISIDQNRILFSLRHSHFIALMQQKFGELAKEISTTLITYGMLNFEDIF 120
Query: 129 DRAKSSEKEGNLVDLDSLRETLVK----------LVTAHYVERCPASEPLLMPISEEEGP 178
+S + DL + + +VK +V +ER P + + E
Sbjct: 121 AVLQSKNIDVKENDLKIVFDEMVKEKYITRVNKNVVDLVQLERTSTPAPSFSTVKQNEN- 179
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
R+KG + K+ V E +P + VG K ++ K
Sbjct: 180 VRRKGIRKRGKV-------DVVTENPIPKKV-----------KVGIDLKAQTSINSSTKV 221
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
+ +D V+ N E + + +D V D+ A ++ M ++
Sbjct: 222 ED----------SDNSQPVWTVNIEVYNKETILYKLLDLVNKKFDNKAVPIIEKMWDLSA 271
Query: 299 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSID 358
+ V + +L I E I+ M+ D ++ + +FV + ++S+ +
Sbjct: 272 YGKTPVDFA-ILCQNLREIAPETIRKYL-EMMSRDE--PFIIAKNQSAFV-SDTNSFKLQ 326
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
+ + +ES + ++G I R+L K +L +I+D E + + LY
Sbjct: 327 VDAATAFLKGVMIESCIQSKFGVIGASIHRVL-KIKHILTDSQIADLLIGEGDEVKRGLY 385
Query: 419 KLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
++ + GY+ +++ + R ++ + +W +N + +L E + +N R+ E+
Sbjct: 386 QMHQAGYINGQEVPKSNIRGGKNSYYMWSINFSQINAILLSETAKSLMNTMDRLKLEISS 445
Query: 477 EKELL 481
+ L+
Sbjct: 446 KSALI 450
>gi|407044497|gb|EKE42630.1| RNA polymerase III subunit, putative [Entamoeba nuttalli P19]
Length = 499
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 96/485 (19%), Positives = 202/485 (41%), Gaps = 59/485 (12%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ N FG V ++ + LL K P T ++ R ++ AL VL+ + ++ ++ E
Sbjct: 11 VQIVENQFGKFVGQITKYLLVK-PSTIFDLWRQCHQPYSKMYEALFVLLHHSILK-YSNE 68
Query: 71 QPDGPKANTQYVVLFDN--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 128
+P ++ D IL +R + F+ ++ Q+F + E+ L+ +G L + +F
Sbjct: 69 EP--------VIISIDQNRILFSLRHSHFIALMQQKFGELAKEISITLITYGMLNFEDIF 120
Query: 129 DRAKSSEKEGNLVDLDSLRETLVK----------LVTAHYVERCPASEPLLMPISEEEGP 178
+S + DL ++ + +VK +V +ER P + + E
Sbjct: 121 AVLQSKNIDVKESDLKAVFDEMVKEKYITRVNKNVVDLVQLERTSTPAPSFSTVKQNEN- 179
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 238
R+KG + KI V E +P + V D+ + + N N+ T E
Sbjct: 180 VRRKGIRKRGKI-------DVVTENPIPKKV-------KVGIDL-KAQTNLNSTTKAED- 223
Query: 239 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 298
+D V+ N E + + +D V D+ A ++ M ++
Sbjct: 224 ------------SDNSQPVWTVNIEVYNKETILYKLLDLVNKKFDNKAVPIIEKMWDLSA 271
Query: 299 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSID 358
+ V + +L I E I+ M+ D ++ + +FV + ++S+ +
Sbjct: 272 YGKTPVDFA-ILCQNLREIAPETIRKYL-EMMSRDE--PFIIAKNQSAFV-SDTNSFKLQ 326
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
+ + +ES + ++G I R+L K +L +I+D E ++ + LY
Sbjct: 327 VDAATAFLKGVMIESCIQSKFGVIGASIHRVL-KIKHILTDSQIADLLIGEGEEVKRGLY 385
Query: 419 KLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
++ + GY+ +++ + R ++ + +W +N + +L E + +N R+ E+
Sbjct: 386 QMHQAGYINGQEVPKSNIRGGKNSYYMWSINFSQINAILLSETAKSLMNTMDRLKLEISS 445
Query: 477 EKELL 481
+ L+
Sbjct: 446 KSALI 450
>gi|167517589|ref|XP_001743135.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778234|gb|EDQ91849.1| predicted protein [Monosiga brevicollis MX1]
Length = 484
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/474 (18%), Positives = 181/474 (38%), Gaps = 87/474 (18%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
EY A +I + FG +VA V L + R+ S + ++ A+ VLIQ
Sbjct: 22 AEYRLDCAASIIESQFGPIVASVFRVLAIQPCHVRRLYVLCKGTSHKNIRKAVTVLIQHG 81
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
++ E P + +++L R+ F + ++ + + + L HG
Sbjct: 82 MLEYEEAEHPI-------FYAKIEDVLLRLHFPAYAHVIGTMYGTLAERIFEQLFLHG-- 132
Query: 123 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 182
L+ L L T+V+L Y + L + ++ +
Sbjct: 133 -----------------LMRLSRLMGTVVQLTGGQYSQ--TEILELFRTLVQDARVIQLH 173
Query: 183 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 242
G+K ++ P+ + N++ + +++ +NN++ + R +
Sbjct: 174 GAKDSELFTFPDECK-------------------NLDKLISQEDGATNNISADQHRYWTI 214
Query: 243 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAE- 301
+ +L+ + + ++RA + D AA ++ A+ SA
Sbjct: 215 CHTQ------------------LLDKLQTRWGVTYIRAKISDEAAIIVEALAALRQSASP 256
Query: 302 KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR---ASLVQLGELSFVDASSDSYSID 358
++V T+ +K + ++ +H+ L+ GE V A +Y +
Sbjct: 257 EEVATQ--------------LKRMGAKQLSREHIAEWLQVLISEGEEIVVQAGMYAYMYN 302
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
+ +++ VE + +RYG ++ RI+ +L + LE D++S A ++L
Sbjct: 303 HSAVATVSRTRAVEKTIEERYGIESMRIYNILCEK-HYLEQDQLSKIAIAANFKATRLLI 361
Query: 419 -KLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 469
+LWK G++ + + R + LW + + +LDE H A NL R
Sbjct: 362 NRLWKAGFVQIYEAARAQDRTTGRYMHLWTADPEAGRHLILDECIHIATNLIQR 415
>gi|20070909|gb|AAH26793.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
Length = 202
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPK 76
HFG++V K+ L+R G + + T+ S +QVK AL VLI N V + +
Sbjct: 16 HFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVLYHVHK-----R 70
Query: 77 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMFDRAK 132
+Y +L +R+ +++ + +V+ LL +G++T+ K++ DR
Sbjct: 71 GVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVADRLT 130
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163
+ ++G +D + V+L H+V+RCP
Sbjct: 131 ETMEDGKTMDYAEVSNAFVRLADTHFVQRCP 161
>gi|384496944|gb|EIE87435.1| hypothetical protein RO3G_12146 [Rhizopus delemar RA 99-880]
Length = 379
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 128/300 (42%), Gaps = 33/300 (11%)
Query: 256 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLS 315
+ + N++ F R+ ID ++ A ++ A + K +K ++S +
Sbjct: 81 IFFSVNYDKFNMLFRNDAIIDFATERINRSAGQIVKAFFEYGKDKMKTLKEQDSPSATPV 140
Query: 316 SIYEEVIKS---------------EAGRNMTLDHV---RASLVQLGELSFVDA----SSD 353
I V K+ E + +L + +L+++ F+ + ++
Sbjct: 141 HIANVVTKTDVATRGDIVLPKDPLEPNKKPSLQEIVRGYITLLKMDPAGFIKSKDERGAN 200
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
Y+++FEK+ + +E +V +RYG R+F++L + G+L E+ +I + KD
Sbjct: 201 HYAVNFEKLRNTMKRRIIEGLVRERYGVATCRVFKILIEKGKLDES-QIQKLAMLPAKDT 259
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
+ L L G++ ++++ T R F LW V + ++ VL + + NL R
Sbjct: 260 REKLALLKTKGFVEIQEVPRTADRAPGRCFHLWYVPLEKCYQEVLVDSYRIICNLQQRKR 319
Query: 472 YELDREKELLNLPADKRTGPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 523
EL K L++ A K D ++ KV LE ++ ++D +++ DF
Sbjct: 320 QELKLRKRLVDKIARKDVMENPDLLGEGEKKEIEQMNKVFERLEVAKSRVDLVVMILRDF 379
>gi|145343676|ref|XP_001416439.1| DNA-directed RNA polymerase III 62 kDa polypeptide (RNA polymerase
C subunit 3) [Ostreococcus lucimarinus CCE9901]
gi|144576664|gb|ABO94732.1| DNA-directed RNA polymerase III 62 kDa polypeptide (RNA polymerase
C subunit 3) [Ostreococcus lucimarinus CCE9901]
Length = 392
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 363 IEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWK 422
+ + + + VE+V+ R G A RIFR+L ++ LE ++++ + V KD ILYKL K
Sbjct: 230 VHLRRQKHVEAVIKTRLGAQALRIFRVLIRNQ--LEQKQVAELSMVPVKDTRDILYKLLK 287
Query: 423 DGYLLMEKLVVT--GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 478
GY+ M+++ T A LW+V+ + K V E+ A N+ LR +E+ R +
Sbjct: 288 FGYVQMQEIARTHDHAPSRTNYLWRVDCSDVEKTVKRELIQALTNVHLRKLFEVRRYR 345
>gi|389638242|ref|XP_003716754.1| hypothetical protein MGG_03225 [Magnaporthe oryzae 70-15]
gi|351642573|gb|EHA50435.1| hypothetical protein MGG_03225 [Magnaporthe oryzae 70-15]
gi|440465153|gb|ELQ34493.1| RNA polymerase III subunit Rpc82 [Magnaporthe oryzae Y34]
gi|440489696|gb|ELQ69325.1| RNA polymerase III subunit Rpc82 [Magnaporthe oryzae P131]
Length = 667
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 117/253 (46%), Gaps = 16/253 (6%)
Query: 285 GAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE 344
G AN +S +++ +K + + S P + + + E +K + + L +R L+ L E
Sbjct: 417 GGANGIS-VIEYDEELDKLLHRQQSAPPTTNGMKESKVKFKEPKESRLSQMRQHLLLLCE 475
Query: 345 LS---FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 401
S + +++DFE ++ Q E+++V+ + GR + R+ R++ K G++ E
Sbjct: 476 SSQGFLRHCGNGQWTVDFEPLVRRLQETELDTVLERTVGRHSLRLIRIVRKRGKVDEK-S 534
Query: 402 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEM 459
+ + + K KI+ ++ G++ ++++ R +S LW + + +LD
Sbjct: 535 LPNQAMMSKGTVHKIMLEMQMHGFVDVQEVPKDSTRNAKSTIFLWFCHTESSLSQLLDNT 594
Query: 460 FHAALN-LSLRVSYELDREKELLNLPADKRTGPLQ--------DRYNRIRKVRILLESSQ 510
+ L L +R + + + L + G Q DRY++ R++ + +
Sbjct: 595 YKTMLRCLQVREVHRQNAREVLRFVERPDIKGREQEALEKKYFDRYDQYRRIEDKILAHV 654
Query: 511 MKLDDAILLFHDF 523
M+LDD I + D+
Sbjct: 655 MRLDDIISILRDY 667
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
VI + +G+L +++ LL +G T + YT L+ Q+++ L VLIQ N + + P
Sbjct: 14 VIDDVYGELPSRIFSTLLIRGRSTLPQLVHYTSLTSRQLRHGLAVLIQHNLLYYSSGSGP 73
Query: 73 DGPKANT 79
+AN+
Sbjct: 74 TAYEANS 80
>gi|260784191|ref|XP_002587152.1| hypothetical protein BRAFLDRAFT_241929 [Branchiostoma floridae]
gi|260784193|ref|XP_002587153.1| hypothetical protein BRAFLDRAFT_241950 [Branchiostoma floridae]
gi|229272290|gb|EEN43163.1| hypothetical protein BRAFLDRAFT_241929 [Branchiostoma floridae]
gi|229272291|gb|EEN43164.1| hypothetical protein BRAFLDRAFT_241950 [Branchiostoma floridae]
Length = 204
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G++V V L KG +++ T+L +VK AL VLIQ N + +
Sbjct: 12 LLQHQYGEIVENVGTFLASKGSFALRDITDGTKLGVNEVKKALCVLIQHNMM-----DFE 66
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF---- 128
+ +Y V + +L R+ +++ + LV+ LL HG++ + Q+
Sbjct: 67 KNRRGLIEYTVHINKVLLITRYPRYIYCAKTLYGDVGEFLVEELLSHGQMLMSQVCRRVS 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEP 167
DR + +EG +D +R+T V+LV H+++R AS P
Sbjct: 127 DRITQALEEGQSMDEFQVRKTFVELVKTHFLQRV-ASPP 164
>gi|196001967|ref|XP_002110851.1| hypothetical protein TRIADDRAFT_54190 [Trichoplax adhaerens]
gi|190586802|gb|EDV26855.1| hypothetical protein TRIADDRAFT_54190 [Trichoplax adhaerens]
Length = 512
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/476 (19%), Positives = 195/476 (40%), Gaps = 77/476 (16%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
FG++V V CL +KG +++ + ++LS ++VKN+L +L+Q + + +T +G
Sbjct: 47 FGEVVEHVVSCLAQKGGAPLRDIIQRSKLSKDEVKNSLCILLQHDLID-YTLSNTNG--- 102
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSS--- 134
Y + D IL R+ +++ F +V+ +L +G++ ++ D+ KS
Sbjct: 103 -YLYRLKIDRILLCNRYPRYIYASKFLFGDIAELIVEEILLNGQIIKNELLDQIKSRLAD 161
Query: 135 --EKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE 192
EK+ D + +L +++ E G R +++ +
Sbjct: 162 IVEKDNTPPDPTEVDTAFDELARNNFI--------------IEVGGGRMLVKSEVEQVDK 207
Query: 193 --PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV--TPGEKRKHDVLELDEC 248
P T + E + P + G K + S ++ P KR H
Sbjct: 208 MTPTTNNKPSEEVSTPKK--------------GNKRQRSEDIPSAPVSKRLH-------- 245
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
E + + ++ + D AA ++ +ML+ ++ ++ N
Sbjct: 246 -------------LEEGTNEINYMMIVEVIGKKYDSIAAAIMRSMLELDANPQESDIITN 292
Query: 309 SVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQN 368
+V L + IKS + + + ++ L + + + D ++ D I
Sbjct: 293 AVRL-------KEIKSHLPKEVNV--TKSILEEYLTILYEDKQLNTGDPDILHIFSEIVK 343
Query: 369 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428
+E +V +R+G + RIFR++ + LE KI D + KDA ILY L + ++ M
Sbjct: 344 RTLECLVQQRFGSNFGRIFRIIVHK-KSLEQKKICDMAMLPSKDAKAILYTLMVEKFIRM 402
Query: 429 EKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL--DREKEL 480
+++ + F L+ ++ VL + A N +R +E+ +R++E+
Sbjct: 403 QEIPRSLDCVASKTFHLFSLDILDTCTVVLSRSYKAIANSIIRRDWEVNSNRQREM 458
>gi|17506119|ref|NP_491807.1| Protein C48E7.2 [Caenorhabditis elegans]
gi|351050084|emb|CCD64205.1| Protein C48E7.2 [Caenorhabditis elegans]
Length = 544
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 107/518 (20%), Positives = 208/518 (40%), Gaps = 85/518 (16%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V +I + FG +VAKV E +L++ L+ K ++S+ ++ ++ LI
Sbjct: 5 KYETQMCVIIIEDIFGKIVAKVMETILKESCQLSTLFYKLKGQISNTLIRKSVSTLIN-- 62
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
F T D T YV D I H + + I + + L+ GRL
Sbjct: 63 --FGFVTFHLD-TNNRTTYVADSDQIQHVISSPRACLIAKTLYGPAAESICVELISQGRL 119
Query: 123 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 182
T+ + R +++++ D ++++ +L AH++ R P+ E SE G
Sbjct: 120 TVSETIRRIQATDETAVFSD---IKKSFEELAAAHFLIRVPSVE------SEIHGCP--- 167
Query: 183 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 242
Q V P F++ TN+ + +KE S + + RK
Sbjct: 168 ----------------QFVTNFDP-----FAISTNI---MEKKEGTSTSDSTSNNRKRKA 203
Query: 243 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA---------- 292
E G A + +R N+ F LR + ID++ G L+
Sbjct: 204 DSTPEDGDAGQ---YWRINWIRFNGYLRDELIIDYLIGGGSKGTMTNLNVKKEETIEDPQ 260
Query: 293 ------MLQATSSAEKKVKTKNSVPLSLSSIYEEV-----IKSEAGRNMT---------- 331
+ Q + K+ + P+S+ SI + + E G N+
Sbjct: 261 GDRTQYITQNVAHLMFKINETRAKPMSMESITASLTDLQRLVKENGLNLAKPDIELACQI 320
Query: 332 -LDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
+D + +LGE ++ + +D + I ES++ +++ A R+ RLL
Sbjct: 321 LVDESDGIIRKLGE-----SNGGIFIVDIRRAIRQICRHHCESLIREQFEGRAIRVMRLL 375
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNR 448
++ L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+ V+
Sbjct: 376 -ENRHYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLYYVDL 434
Query: 449 QILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 486
+ +++ NL +R +E K +L+ A+
Sbjct: 435 PRTIRGLVEYTCKLVRNLIVRQRHERTENKSVLDKDAN 472
>gi|242001606|ref|XP_002435446.1| conserved hypothetical protein [Ixodes scapularis]
gi|215498782|gb|EEC08276.1| conserved hypothetical protein [Ixodes scapularis]
Length = 436
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 133/346 (38%), Gaps = 51/346 (14%)
Query: 56 LVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 115
+VLI N V F PK +Y++ D +L+ +R+ ++ + +V+
Sbjct: 1 MVLIHHNIVD-FRLH----PKGYVEYIIDADRVLYMLRYPRYTHCAKTLYGDTGELIVEE 55
Query: 116 LLEHGRL----TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEP---- 167
LL++GR+ L+++ R + S +++R V LV H++ R PA EP
Sbjct: 56 LLQNGRMCMSSVLRKVLGRLQGSHTA------EAVRSKFVDLVQTHFLCRVPAPEPGGPD 109
Query: 168 ---LLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGE 224
+ + EE+ + K S S G T P+ SV E G
Sbjct: 110 AKVPTLILLEEDMYSVPKASPSPSIAGSQPTP---------PVHLQLLSVAAEDEDQEGP 160
Query: 225 KEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDD 284
K S + ++ + ++ NFE F R + + L
Sbjct: 161 PSKKSRVES-----------------QPDEGIYWQVNFERFHLFFRDQLLVQAASRRLGL 203
Query: 285 GAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQ--L 342
A V+ +L+ + K+ S P+S +++++ K + LD + LV+ L
Sbjct: 204 KAGEVVRTLLR-LAETRTHPKSAQSCPVSKQEVHQQLHKEISLSQKELDSFLSLLVEDPL 262
Query: 343 GELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 388
+ D + +D + + + S V R+G + RIFR
Sbjct: 263 RLVQRSDERGGMFCVDLHRGLRVLAEAFFASTVQDRFGAKSCRIFR 308
>gi|213402243|ref|XP_002171894.1| DNA-directed RNA polymerase III complex subunit Rpc82
[Schizosaccharomyces japonicus yFS275]
gi|211999941|gb|EEB05601.1| DNA-directed RNA polymerase III complex subunit Rpc82
[Schizosaccharomyces japonicus yFS275]
Length = 585
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 112/254 (44%), Gaps = 10/254 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + VI FG+ A VC LL G +T Q ++ T+L ++++ AL+ L++
Sbjct: 1 MSQYAVELCEVVIQEFFGECCATVCHALLNHGRMTLQTLRSRTKLPLKKLRQALVSLMRH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ V + + + T Y + I + VR K + I+SQ Q+ + + + GR
Sbjct: 61 HLV--LYAKVIEHLREVTHYEAQWTEIYNFVRKGKAVYIISQRVSQEAGSIAKYIATQGR 118
Query: 122 LTLKQMFDRAKSSEKEGNLVD--LDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPA 179
+ + +F K+ K+ + VD + LR + L+ +++ L+P+ ++E
Sbjct: 119 VRVSDIF---KAFGKDPDAVDDETNKLRNEIYALMEKKFLDVVQPRH--LIPMFDQEMEL 173
Query: 180 RKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 239
R K ++ K + ++ A+ ++ + +VG K K + KR+
Sbjct: 174 RLKHTERLKSENMSDAKRNHEIQDAIQLDLAKLDAAEQ-SKEVGMKRKPIESFARPSKRR 232
Query: 240 HDVLELDECGVADE 253
DE D+
Sbjct: 233 RRAGAADETADGDD 246
>gi|384494305|gb|EIE84796.1| hypothetical protein RO3G_09506 [Rhizopus delemar RA 99-880]
Length = 376
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 32/302 (10%)
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 312
+ +V + N+E + R+ D ++ A VL A L+ K VK + S
Sbjct: 76 DPTVFFALNYEKYNIAFRNNMITDFATDRINRTAGIVLKAFLRNGKDKMKIVKEETSAAS 135
Query: 313 SLSSI----YEEVIK----------SEAGRNMTLDHVRASLVQL------GELSFVDA-S 351
+ + I + EV++ S + T+ V+L G L+ D
Sbjct: 136 TPNHIANMLHPEVLERGDIILPRDPSNPKKKPTVSETIEGYVKLLKTDTAGFLTTKDQLG 195
Query: 352 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 411
+ Y+++FEK+ + E+ +++RYGR RI R+L G++ E+ +I + + K
Sbjct: 196 PNHYAVNFEKLRYNMKKRLFENSITERYGRAVCRIVRILLDKGKMDES-QIQKISMLPLK 254
Query: 412 DAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 469
D + L L+ DG + ++++ + R + F LW V + ++ +L + + +NL R
Sbjct: 255 DIRQKLEMLFADGIVEIQEVPRSTDRATSRSFHLWHVPLEKCFEDLLTKAYKIIVNLQQR 314
Query: 470 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRI--------LLESSQMKLDDAILLFH 521
EL + LL K D N I K + +E S+ +LD+ ++
Sbjct: 315 KVEELQQRSRLLEKMNRKDVIANMDLLNEIDKAEVGNMNKIIERIEVSKARLDEMAMILR 374
Query: 522 DF 523
DF
Sbjct: 375 DF 376
>gi|268567834|ref|XP_002640090.1| Hypothetical protein CBG12577 [Caenorhabditis briggsae]
Length = 546
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 110/522 (21%), Positives = 208/522 (39%), Gaps = 91/522 (17%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGP-LTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V ++ + FG +VAKV E +L++ L +K ++S V+ AL LI
Sbjct: 5 KYETQMCVIMVEDIFGKIVAKVLETVLKESCHLPTLLLKLKGQMSSVLVRKALSTLINFG 64
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFL----TILSQEFDQQCVELVQGLLE 118
V +F+ + + T YV D I + + + T+ + CVEL+
Sbjct: 65 FV-SFSLDTNN----RTTYVADADQIQYVISAPRACLIAKTLHGPAAESICVELI----S 115
Query: 119 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
GRLT+ + R +S+++ V+ ++ + +L A ++ R PA E L
Sbjct: 116 QGRLTVSETIRRIRSTDES---VEFSDIKHSFEELARAQFLIRVPAVESNLY-------- 164
Query: 179 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV-ESDVGEKEKNSNNVTPGEK 237
G P+ L + +F + N+ E + +S N K
Sbjct: 165 ------------GCPQ----------LTVNFNQFEMPKNIMEKKEPQTRGSSFNDASSRK 202
Query: 238 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 297
RK D D + +R N+ F LR + ID +L G + L
Sbjct: 203 RKADASPEDM-----DAGQYWRINWARFNGYLRDELIID----YLIGGGSTATMTHLNVR 253
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN--MTLDHVRASLVQLGEL---------- 345
++E+ V ++ ++ + KS R +++D + S+ L +L
Sbjct: 254 KNSEEDVPQQDRTQYITQNVAHLMFKSNELRANPLSMDSITVSITDLQKLVRENELDLSK 313
Query: 346 -------------------SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRI 386
D++ Y++D I ES++ +++ A R+
Sbjct: 314 PDIELACQILVDESDGIVRKVGDSNGGLYTVDIRHGIRQICRHHCESLIREQFEGRAIRV 373
Query: 387 FRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLW 444
RLL +S L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+
Sbjct: 374 MRLL-ESRHYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLY 432
Query: 445 KVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 486
V+ + +++ NL LR +E K LL+ A+
Sbjct: 433 YVDLPRTIRGLVEYTCKLVRNLILRQRHERTENKALLDKDAN 474
>gi|229594701|ref|XP_001022455.2| hypothetical protein TTHERM_00989510 [Tetrahymena thermophila]
gi|225566695|gb|EAS02210.2| hypothetical protein TTHERM_00989510 [Tetrahymena thermophila
SB210]
Length = 558
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 143/343 (41%), Gaps = 56/343 (16%)
Query: 150 LVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEA 209
LV+ + ++++++ + + EG RK+ K+ K + + + + Q +E ALP +
Sbjct: 216 LVQQLQSYFIQKYKGEDK-----DKVEGQIRKQVKKTKKNLIDDDELLQNELEIALPQKE 270
Query: 210 MRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRL 269
+ E+++N+++ D L D A++Q + Y+ N FI
Sbjct: 271 AK-----------KEEQQNTSD---------DYLIYDP---ANKQPLSYKINVRQFIHVF 307
Query: 270 RHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIK-----S 324
R + L A ++ ML + + K + P++L I +IK +
Sbjct: 308 RTEEISKLAEGKLSVQAKQIIKLMLDNSQRIGPAREIKTTEPMTLDQIKNLLIKAKGKDT 367
Query: 325 EAGRNMTLDHVRASLVQLG----ELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYG 380
+A ++ L + + + G + F++ + YS++ EKII + + +V ++Y
Sbjct: 368 QAVKDENLQNFLRVMKRDGGKFISIDFINGK-EMYSVNVEKIINKMKIRHIAQIVERKYS 426
Query: 381 RDAYRIFRLLSKSGRL------------------LETDKISDTTFVEKKDAPKILYKLWK 422
A RIFR++ K L E +KIS+ KD K L KL
Sbjct: 427 LIAGRIFRIMRKYKHLEEKAVKLILKIFVNTLNVFEINKISEIALQSLKDTQKYLNKLST 486
Query: 423 DGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALN 465
+GY+ ++ + ++K + Q + +++ + LN
Sbjct: 487 EGYIDYIEVKEKDKTVNLLCMYKYDEQKVLSKTIEQYYQIRLN 529
>gi|297818842|ref|XP_002877304.1| hypothetical protein ARALYDRAFT_905475 [Arabidopsis lyrata subsp.
lyrata]
gi|297323142|gb|EFH53563.1| hypothetical protein ARALYDRAFT_905475 [Arabidopsis lyrata subsp.
lyrata]
Length = 148
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 356 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 415
++DF+KII +AQ +++E+V++ + G ++ +IFR LSK L+ +I + KD
Sbjct: 8 NLDFDKIITLAQKDKMEAVITDKLGDESCKIFRFLSKEQTFLQDYEIKSAMGI-GKDLQD 66
Query: 416 ILYKLWKDGYLLMEKLVVT 434
L LW +G+L ++K +VT
Sbjct: 67 DLMTLWCEGFLTIQKEMVT 85
>gi|340517829|gb|EGR48072.1| RNA polymerase III subunit [Trichoderma reesei QM6a]
Length = 638
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++++ +G+L +++ L KG T + YT+L Q++N L VLIQQN + T P
Sbjct: 11 LVSDLYGELPSRILAALFTKGRSTIAQLGLYTQLGPRQIRNGLGVLIQQNLLYHHTN--P 68
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM----F 128
D + T Y D + VRF K L ++ ++ +LVQ LL G + ++
Sbjct: 69 DTKR--TTYDANPDACYNLVRFGKILEMIESQYGTAERDLVQTLLLLGYARIAELTHAYV 126
Query: 129 DRAKSSEKEGN 139
RA +S N
Sbjct: 127 SRAPTSNGHAN 137
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 105/236 (44%), Gaps = 23/236 (9%)
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--FV----DASSDSYSID 358
K P+ ++ +E+ S R LD +R L+ L E FV +++D
Sbjct: 409 KPNGGRPMKVT--FEDTATSSDNR---LDQMRQHLLLLAESKHRFVRHCGTQGRGQWTVD 463
Query: 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 418
F++++E + E++ + + +GR R+ R+L + G+L E + ++K D +
Sbjct: 464 FDQVMERLRELELDGFIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKTDVQAKML 522
Query: 419 KLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 476
+ G + ++++ R + W +R+ H+LD+++ A + + E R
Sbjct: 523 AMQMAGLVDIQEVPKDNTRLANRTLFFWFFDRERYQAHILDDLYKAMVRALQVLQVERHR 582
Query: 477 EKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
E+ +L+ K T ++YNR + + L M+LD+ + +F D+
Sbjct: 583 ERNILSFVERKDVMGKEEEVMTAEHYNKYNRHLEEQNKLIGQVMRLDEMVSIFRDY 638
>gi|443925339|gb|ELU44196.1| RNA polymerase III subunit RPC82 helix-turn-helix domain-containing
protein [Rhizoctonia solani AG-1 IA]
Length = 821
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 94/432 (21%), Positives = 164/432 (37%), Gaps = 66/432 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +HFG + KV LL +G L + R+T L V+ A++ LIQ N V +
Sbjct: 318 IVHSHFGPIAGKVAGTLLNRGRLQLPTLIRFTGLKPSLVRAAVIALIQHNLVW-HAEDAI 376
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF---- 128
+G + + + R RF K L I ++F ++ +L+HG+L L +
Sbjct: 377 EGEVVEIDW----EECIARQRFGKILAITKEKFGVPGQAIISIILDHGKLRLPDILRLLN 432
Query: 129 --DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 186
D K SE ++ L L ++H PAS IS + R + +
Sbjct: 433 KSDNQKESEA--------YIKVALELLTSSHLRVSTPASH-----ISPRDKLIRYEAEER 479
Query: 187 AKKIG--EPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 244
K +G P+ Q + A + + R + K KN N G R V+
Sbjct: 480 KKHVGIVAPKDSRQFRITAEVRIRREREEAEAPSVGLIKRKAKNKENKEGGSGRSKKVIA 539
Query: 245 LDEC----GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 300
+ GV D + ++ + + R +D AA VL +LQ
Sbjct: 540 VKWASPIFGVRDAKQMI--------------QLIVAAAREKYNDEAAAVLKGILQV---C 582
Query: 301 EKKVKTKNSVPLSLSSIYEEVIK-----SEAGRNMTLDHVRASLVQLGELSFVDASS--- 352
E K+ + + S IY +V++ S G ++ + + ++ AS+
Sbjct: 583 EPKMTQLDEI-RSGEHIYRDVLRLYLKGSGVGTSVIREFISILACADNPTTWGVASAFLS 641
Query: 353 ---------DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKIS 403
+++FE I + VE V R+G +I L R+L + ++
Sbjct: 642 ISGSGGGGGGKVAVEFEAISRRLKRGVVEGAVRDRWGDHIAKIAMLAPNDVRVL-VNTLN 700
Query: 404 DTTFVEKKDAPK 415
V ++ PK
Sbjct: 701 TANIVALQEVPK 712
>gi|312377081|gb|EFR23998.1| hypothetical protein AND_11727 [Anopheles darlingi]
Length = 505
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
++++ +KI E +E+++ ++YG A RIFR++ + R +E ++I V K+A
Sbjct: 305 FTVNAKKIFEQLTWSCIENIIVEKYGSKAARIFRVI-RMKRFIEQEEIQKEAMVPAKEAK 363
Query: 415 KILYKLWKDGYLLMEKL-----VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 469
++ YKL ++ +LL++ + GA +S FL + RQIL +L+ + A N R
Sbjct: 364 QLTYKLMEENFLLIQTIRKPGGGSAGAPKSFFLFYVNQRQIL-SMLLESCYKALYNSITR 422
Query: 470 VSYELDREKELL 481
+++ K L+
Sbjct: 423 STHDKAVNKRLI 434
>gi|260951159|ref|XP_002619876.1| hypothetical protein CLUG_01035 [Clavispora lusitaniae ATCC 42720]
gi|238847448|gb|EEQ36912.1| hypothetical protein CLUG_01035 [Clavispora lusitaniae ATCC 42720]
Length = 595
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 20/154 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V NH G+ A + L+ G LT +++ ++L+ +QVK AL+ LIQ NC+Q +
Sbjct: 22 VALNHLGETSAIIISTLISYGRLTAKDISIKSKLTLKQVKIALVSLIQLNCIQYW----- 76
Query: 73 DGPKANTQYVVLFD----NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 128
K N+ V + I+ + + + ++ ++ ELVQ ++E+G +T+K
Sbjct: 77 ---KENSSKSVFYTFNDRGIITLLHAGDIIARIKSQYGEKAAELVQNIIENGNITVKDFI 133
Query: 129 DR-AKSSEKEGNLVDLDSLRETLVKLVTAHYVER 161
+ EK N+ LVKL ++ R
Sbjct: 134 STLSDEQEKYDNMA-------ILVKLFNDGWLHR 160
>gi|71028552|ref|XP_763919.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350873|gb|EAN31636.1| hypothetical protein TP04_0284 [Theileria parva]
Length = 429
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
++VI +FG L ++V LL +GP++ + T+ + + V+NAL++LI+ V+
Sbjct: 9 VLYVIEYYFGRLTSRVTSQLLLRGPISLYKLVNPTKFNFKVVRNALVILIRHGIVEYNLE 68
Query: 70 EQPDGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 127
GP+ T Y V +N L L Q+ D C +++ + ++G + K++
Sbjct: 69 TSSSGPRLVTHVLYSVNINNALSLFIVPLILLNCKQQLDDNCYDVLLHISKYGITSQKKI 128
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 178
+S + G+ V + L KL+ +H++ + + L+ ++++GP
Sbjct: 129 ---KESFPELGDYV----ISNCLSKLINSHFIVAVESFDHLM---NKQQGP 169
>gi|400597939|gb|EJP65663.1| RNA polymerase III subunit RPC82 [Beauveria bassiana ARSEF 2860]
Length = 642
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DF K++ + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 464 WTVDFSKVLNRLKETELDAYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKSDVQ 522
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
+ + G + ++++ +R + W +R+ LD+++ A + +
Sbjct: 523 LKMIAMQMAGLVDVQEVPKDNSRMANRTLFFWFFDRERTESQALDDIYKAMVRCLQTMQV 582
Query: 473 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
E RE+ +L+ K T D+YN+ KV+ L M+LD+ + +F D+
Sbjct: 583 ERHRERNILSFVERKDVQGKEEEVMTSEHYDKYNKHLKVQEKLLGQVMRLDEMVAIFRDY 642
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L ++N L VL+QQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILSALLTKGRSTIAQLAQHTSLPPRFLRNGLSVLVQQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG-- 120
+ T D T Y D + VR K L + ++ +LVQ LL+ G
Sbjct: 64 LLFHHT----DSDSRGTSYEANSDACYNLVRSGKILEAIESQYGTAERDLVQTLLQLGFA 119
Query: 121 RLT-LKQMFDRAKSSEKEGN----------LVDLDS-LRETLVKLVTAHYVE 160
R+ L Q F + ++S+ G+ L++ +S L L +L+ A VE
Sbjct: 120 RIADLTQAF-KGRTSKTNGHTNGSTEMASGLIESESHLNAVLGRLIQAEIVE 170
>gi|156062964|ref|XP_001597404.1| hypothetical protein SS1G_01598 [Sclerotinia sclerotiorum 1980]
gi|154696934|gb|EDN96672.1| hypothetical protein SS1G_01598 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 585
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+KHAV + + + +G+L +++ LLR+G L+ +KR+T+L+ Q+K L VL++QN
Sbjct: 4 SKHAVELCSLLVDDIYGELSSRIFTILLRRGRLSMIALKRHTQLTTRQLKLGLTVLVRQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--LLEHG 120
V + E A+T Y D VR K L I + F E++ LL H
Sbjct: 64 LVYHNSDE-----GADTNYEANIDAAYALVRSGKILEIAEERFGSVAAEIMGQLVLLGHA 118
Query: 121 RLT-LKQMFDRAKSSEKEGNLVD 142
+++ + +++ + GN ++
Sbjct: 119 KVSDIIAELNKSHDTRANGNGIN 141
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DFE+++E + E++S++ + +G+ +R+ R++ K G+ LE I+ V+++D+
Sbjct: 483 WTVDFERVVERLRELEIDSIIYENFGQIGHRLIRVMRKMGK-LEEKHIAKVALVKQQDSR 541
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQFL 442
L ++ G + ++++ R F
Sbjct: 542 TKLVEMQMHGMVDVQEVPRDAGRMIAFF 569
>gi|341876865|gb|EGT32800.1| hypothetical protein CAEBREN_14755 [Caenorhabditis brenneri]
Length = 542
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 112/514 (21%), Positives = 204/514 (39%), Gaps = 75/514 (14%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V +I + FG +VAKV E +L++ L +K +++ +K AL LI
Sbjct: 5 KYETQMCVIIIEDIFGKIVAKVMETILKESCQLATLMLKLKGQMTTVLIKKALTTLIN-- 62
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
F T D T YV D I + + + I + + L+ GRL
Sbjct: 63 --FGFVTFNLDNNHRAT-YVADADQIQYVISAPRACLIAKTLYGPTAESICIELISQGRL 119
Query: 123 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 182
T+ + R K++++ D ++ +L +H++ R P E
Sbjct: 120 TVSETIRRIKAADESAVWSD---IKNAFGELAASHFLIRVPPVE---------------- 160
Query: 183 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 242
++ G P+ + A AM +++ E++ E + +N KRK D
Sbjct: 161 ----SEIYGCPQFV------ANFDPFAMPNAIMEKNETNSSELSTSDSN---SRKRKADS 207
Query: 243 LELDECGVADEQSVVYRANFEGFIRRLRHKGCID------------HVRAHLDDG----A 286
D + +R N+ F LR + ID H+ ++G
Sbjct: 208 SPEDA-----DAGQYWRLNWVRFNGYLRDELIIDYLIGGESTATMTHLNVKREEGEEVPQ 262
Query: 287 ANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIK-SEAGRNMTLDHVRASLVQLGEL 345
+ + Q + K+ + PLSL +I V R +LD + ++L
Sbjct: 263 VDRTQYITQNVAHLMFKINETRANPLSLENITASVTDLQRLVRENSLDLAKPD-IELACQ 321
Query: 346 SFVDAS-------SDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 394
VD S DS Y++D I ES++ +++ A R+ RLL +S
Sbjct: 322 ILVDESDGIVRKLGDSNGGLYTVDIRHAIRQICRHHCESLIREQFEGRAIRVMRLL-ESR 380
Query: 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILW 452
L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+ V+
Sbjct: 381 HYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSTDFQPARTFYLYYVDLPRTV 440
Query: 453 KHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 486
+ +++ NL LR +E K LL+ A+
Sbjct: 441 RGLVEYNCKLVRNLILRQRHERAENKALLDKDAN 474
>gi|307174179|gb|EFN64824.1| DNA-directed RNA polymerase III subunit RPC3 [Camponotus
floridanus]
Length = 500
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/450 (18%), Positives = 180/450 (40%), Gaps = 82/450 (18%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+ ++ +K + ++ +FG++V + LL T ++ +T L +VK L VLI+
Sbjct: 1 MKDFQSKLCMLLLEEYFGNIVQCIGNSLLHSRK-TLDVIRLHTNLPLIKVKEGLCVLIKY 59
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
F T Q D K + YV+ + I+ +R+ +++ + +++ +L+HG
Sbjct: 60 ----GFVTYQQD-EKGSVHYVLHCEKIIMLLRYPRYMLFAKTYCRDEGEIMLEEVLKHGY 114
Query: 122 LTLKQMFDRA-----KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 176
+T ++ + ++ K + + +L+ T LV + L+ IS
Sbjct: 115 ITASEVIIKTYKRLEETPSKCAEQLSVANLKNTFELLVKNQF---------LMHSIS--- 162
Query: 177 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 236
T+++ + + + + + ++N+ N PG+
Sbjct: 163 ----------------FNTMKENIEKPEYNLPHLNMTAISNI--------LQGQNADPGD 198
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
+ + ++ NF+ F + R K + + D A ++ ++
Sbjct: 199 NK-----------------LYWKVNFDRFTQDFRDKIMVSAMTQRFDINAGELMRQLINL 241
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGEL------SFV-- 348
T S P+ + I EEV + +T + L Q L F+
Sbjct: 242 MY-LRTAPWTATSNPIPYTEIKEEV------KKLTFLELEQYLDQYLRLIEEDSSQFIKR 294
Query: 349 --DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
D+ YS++ + + +ES+V++R+G A RIFRL+ + + + D+I
Sbjct: 295 VGDSGGGQYSVNMKNAFKQLVWATIESIVAERFGSKAARIFRLV-RIEKNVNLDQIQQLA 353
Query: 407 FVEKKDAPKILYKLWKDGYLLMEKLVVTGA 436
+ K+A + Y L ++ ++ M+++ G
Sbjct: 354 MIPAKEAKCLTYILAQENFIQMQEIKKAGT 383
>gi|407928158|gb|EKG21030.1| RNA polymerase III Rpc82 C -terminal [Macrophomina phaseolina MS6]
Length = 637
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G+L ++V L + G LT + + +Y++LS +K+ L VLIQQ V +TTE
Sbjct: 12 LVDDLYGELSSRVFSILAKLGRLTIRGLVKYSDLSARDLKHGLAVLIQQGLVLHYTTED- 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
Y +D+ VR K + ++ F + LV LL G + + D
Sbjct: 71 -----EIYYEPHWDHAYSLVRAGKIVKMVEDRFGESAGGLVSNLLLLGHAKVSDLADAYG 125
Query: 133 SSEKEGNLVDLDSL 146
S K G VD SL
Sbjct: 126 VSSKTG-AVDAASL 138
>gi|388853668|emb|CCF52636.1| uncharacterized protein [Ustilago hordei]
Length = 709
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 58/195 (29%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQ--------------------- 50
HV+ HFG + A+V LL++G L + ++R+ + +
Sbjct: 16 HVLLQHFGPIAARVGALLLKRGRLNIREIQRFLNQAPTRTNRGPTDPFSNASTTHSKPTL 75
Query: 51 ---------------------------VKNALLVLIQQNCVQAFTTEQPDGPKANTQYV- 82
V+ ++ LIQ C +T+ P+ N ++
Sbjct: 76 VSAPIAGASSSHNTGDPNAPVPVPKLLVEQTVMTLIQHGCAWHSSTD-PELADPNEEFFE 134
Query: 83 VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVD 142
+ + +L R+RF K++ I QE +V+ +L+HG+L + DR S D
Sbjct: 135 INVNQVLLRLRFGKYIGIAEQELGDTAARIVKLVLQHGKLQASDIIDRTAS--------D 186
Query: 143 LDSLRETLVKLVTAH 157
+D+ R+ + AH
Sbjct: 187 MDTQRKASLAAAQAH 201
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 352 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 411
+ S +I+F + E + + + +V+ +++G A RI +L + G+ LE IS V
Sbjct: 518 ASSLTIEFSNVAERMRRDLLRNVIEEKFGTAAIRIMNILREKGK-LEEKHISKLALVSIS 576
Query: 412 DAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 469
+ + +L+ L ++++ T R F LW V+ +LD ++ + L R
Sbjct: 577 ETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAKCRAWLLDHLYQSLARLGQR 636
Query: 470 VSYELDREKELL 481
+ E+ R+ LL
Sbjct: 637 RNEEMRRQLTLL 648
>gi|126134279|ref|XP_001383664.1| subunit of RNA polymerase III (C) [Scheffersomyces stipitis CBS
6054]
gi|206558138|sp|A3LQX9.1|RPC3_PICST RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|126095813|gb|ABN65635.1| subunit of RNA polymerase III (C) [Scheffersomyces stipitis CBS
6054]
Length = 599
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGP 75
NH GD+ A + CL+ G LT ++ T++ ++VK+AL+ LIQ NC+ + + G
Sbjct: 26 NHLGDVAALIISCLISYGRLTATDISHRTKIPVKKVKSALVSLIQMNCIFYW---RESGS 82
Query: 76 KANTQYVVLFD--NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 133
K Q F+ IL + ++ ++ + + E+VQ +L +G + ++ +
Sbjct: 83 K---QVFYSFNETGILVFLHSGDIISHVTTHYGEDSAEIVQNILVNGHIRIEDYVNNIDD 139
Query: 134 SEKEGNLVDLDSLRETLVKLVTAHYVER 161
EK+ +D+ +L +L T ++ R
Sbjct: 140 EEKK---LDIQTL---FFRLFTDRWIVR 161
>gi|405956637|gb|EKC23109.1| DNA-directed RNA polymerase III subunit RPC3 [Crassostrea gigas]
Length = 200
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 371 VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430
+ESVV +R+G RIFR+L LE +I D + K+A +LY L+ + ++ +
Sbjct: 16 IESVVQERFGSKCLRIFRVLLLKKH-LEQKQIEDFVMISAKEAKDLLYTLFSENFITTTE 74
Query: 431 LVVT--GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 482
+ T A F L+ VN Q + VL+ + A N ++ E++ + LL+
Sbjct: 75 ISKTPDHAPSRTFFLFTVNIQHVASMVLNRCYKALYNAMVKKETEVNEHRRLLD 128
>gi|253745283|gb|EET01310.1| Hypothetical protein GL50581_1430 [Giardia intestinalis ATCC 50581]
Length = 487
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 223 GEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHL 282
G K + P K+ H D V+D V Y + E I + + D+V
Sbjct: 184 GRNTKGTEPAEPPRKQPHSFCTTDPSAVSDSGEV-YCVSVERLIALFQEEELADYVSTVY 242
Query: 283 DDGAANVLSAMLQATSS---------AEKKVKTKNSVPLSLSSIYEEVIKSE-----AGR 328
D V A L +SS + V+ N+ P +L +++ ++ ++ G
Sbjct: 243 DKDMGTVFRAALFISSSFQALGFCSFSSADVR-PNTRPFNLEQLHDALMNTQYSLNATGS 301
Query: 329 NMTLDHVRASLVQLG---ELSFVDASSDS-YSIDFEKIIEIAQNEEVESVVSKRYGRDAY 384
N TL AS++ L + V ++D Y +D + +E Q + ++++R+G A
Sbjct: 302 NFTLSFC-ASVLNLYISESKAMVHMTNDGQYIVDVDAAVERLQMAILLRIITERHGPMAR 360
Query: 385 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 431
R+F ++S G ++E ++ + + A +L L +GYL + L
Sbjct: 361 RMFNIISSRG-MMEASVVAAEGMIPRSQAVSLLTTLCTEGYLQITML 406
>gi|412990321|emb|CCO19639.1| DNA-directed RNA polymerase III subunit RPC3 [Bathycoccus prasinos]
Length = 392
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 371 VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430
+ESVV +R+G A RIFRLL + R L+ +IS+ + K +ILYKL+K Y+ +++
Sbjct: 233 IESVVHQRFGLLAKRIFRLLFINRR-LDQKEISEMAMLPIKQTREILYKLFKSEYIKIQE 291
Query: 431 LVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
+ T A W V+ + + F A LN+S
Sbjct: 292 VSRTSDHAPSRTLYFWYVDLDCIRHKICQNCFQAYLNIS 330
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNV-KRYTELSDEQVKNALLVLI 59
M G + A+H++ + FG++ VC L+ G T + + + +++ + VL+
Sbjct: 1 MANPLGNRLALHIMRDLFGEVAENVCTTLMHHGEATLDEILSKTMPVEKNKIQRIIYVLL 60
Query: 60 QQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 119
+Q C++ F++ Q G K T+Y ++ +R L L+ + +++ LL H
Sbjct: 61 KQRCIR-FSSNQVKG-KQETKYTFHSSDVFKFMRQPIILKNLNSGLEINERKMLVYLLLH 118
Query: 120 GRLTLKQ 126
G ++ ++
Sbjct: 119 GSVSCQR 125
>gi|322696531|gb|EFY88322.1| RNA polymerase III subunit RPC82 [Metarhizium acridum CQMa 102]
Length = 653
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + FG+L +++ L KG T + ++ L ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLFGELPSRILVALFTKGRCTLAQLVQHVSLGPRHLRNGLGVLIQQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
+ +T PD T Y D + VR K L +++ ++ +LVQ L++ G
Sbjct: 64 LLYHYT--DPD--TGGTNYEANSDACYNLVRSGKILEVINSQYGTAERDLVQTLMQLG 117
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 322 IKSEAG---RNMTLDHVRASLVQLGELS--FV----DASSDSYSIDFEKIIEIAQNEEVE 372
+K E G ++ LD +R L+ L E FV +++DFE +++ + E++
Sbjct: 433 VKFEDGAMAKDSRLDQMRQHLLLLAESKHRFVRHCGTQGRGQWTVDFELLMDRLRESELD 492
Query: 373 SVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432
+ + + +GR R+ R+L + G+L E + ++K D + + G + ++++
Sbjct: 493 AYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKGDVQGKMLAMQMAGLVDVQEVP 551
Query: 433 VTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK--- 487
+R + W + + + +LD+++ L + E +E+ +L K
Sbjct: 552 KDNSRLANRTLFFWFFDGERVQSQLLDDIYKGMLRCLQTLDVERHKERNILTFVERKDVK 611
Query: 488 ------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
T ++YNR + + L M+LDD + +F D+
Sbjct: 612 GKEEEVMTAEHYNKYNRHLEGQQKLLGQVMRLDDMVAVFRDY 653
>gi|361126875|gb|EHK98861.1| putative DNA-directed RNA polymerase III subunit RPC-3 [Glarea
lozoyensis 74030]
Length = 616
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G+L +++ LLR+G L + R+T L+ +Q+++ L+VL+QQN + T D
Sbjct: 19 YGELASRIFTILLRRGRLPIPTLARHTRLTPKQLRHGLVVLVQQNLIYHHT----DSVTG 74
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKE 137
T Y ++ +R K ++ + E+V LL G + + D ++ +KE
Sbjct: 75 VTHYEANYNAAYALLRSGKIMSFVETRHGVLAREIVHNLLLLGHTKISDLLDAYEAQKKE 134
>gi|170575484|ref|XP_001893264.1| hypothetical protein Bm1_08965 [Brugia malayi]
gi|158600845|gb|EDP37905.1| hypothetical protein Bm1_08965 [Brugia malayi]
Length = 228
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 349 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 408
D++ + +DFEK I + VES + ++ A R+FRLL + G LE D + +
Sbjct: 46 DSAGGLFVVDFEKAIAMHCQRHVESAIREKLDVRAVRVFRLLMQKG-FLEEDHVEKLAML 104
Query: 409 EKKDAPKILYKLWKDGYLLMEKLVVTG 435
+A K+ Y+L + G++LM+ + T
Sbjct: 105 SSTEARKLCYQLLEKGFVLMKHVAKTN 131
>gi|84996465|ref|XP_952954.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303951|emb|CAI76330.1| hypothetical protein, conserved [Theileria annulata]
Length = 465
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/437 (19%), Positives = 174/437 (39%), Gaps = 77/437 (17%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
L EY ++VI +FG L ++V LL +GP++ + + + + +NAL++LI+
Sbjct: 3 LIEYDL--VLYVIEYYFGRLTSRVTSQLLLRGPISLPKLVNPKKFNFKVFRNALVILIRH 60
Query: 62 NCVQAFTTEQPDGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 119
V+ GP+ T Y V +N L L ++ D C +++ + ++
Sbjct: 61 GIVEYSFETTTIGPRLVTHLLYSVNINNALSMFLIPSILLNCKEQLDDDCYKVLLHISKY 120
Query: 120 GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPA 179
G T +++ +S + GN V + L L+ +H++ + + L+
Sbjct: 121 GITTPRKI---KESLPELGNYV----ISNCLFNLINSHFIVPVDSFDQLM---------N 164
Query: 180 RKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 239
++KG + P + + F V+ + + + N + G
Sbjct: 165 KQKGHE-------------------YPCDGI-FDVLETL-------TRGTTNSSAGP--- 194
Query: 240 HDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA--NVLSAMLQAT 297
+C + D Q +Y+ +FE + L + + + + + A+ VL ++
Sbjct: 195 -------QCNIKDNQ--LYKIDFEFALENLVKEEIKQLIYSRVGNNASIKIVLDVLMDNN 245
Query: 298 SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE----LSFVDASSD 353
+ K+ L I + + +N+T D++ L L + L
Sbjct: 246 TRKWPKI-------LHYRDIESRIRSLKNTQNITSDYLMKLLNGLNKHPDNLVVYSPQDQ 298
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKS-----GRLLETDKISDTTFV 408
SY +D+ K + + + V + G A RI+ LL K L+T ++S+ V
Sbjct: 299 SYYLDWYKARRMLKEMAIFESVKRLLGIRAARIWNLLLKELDNDVSSKLDTHQVSENALV 358
Query: 409 EKKDAPKILYKLWKDGY 425
+ A ILY+L G+
Sbjct: 359 SLQTARSILYRLTMKGF 375
>gi|347832925|emb|CCD48622.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Botryotinia fuckeliana]
Length = 666
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+KHAV + + + +G+L +++ LLR+G L +KR+T+L+ Q+K L VL++QN
Sbjct: 4 SKHAVELCSLLVDDIYGELSSRIFTILLRRGRLPMNALKRHTQLTTRQLKLGLTVLVRQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--LLEHG 120
V + ++T Y D VR K L I + F E++ LL H
Sbjct: 64 LVYH------NSEGSDTHYEANIDAAYALVRSGKILEIAEERFGSVAAEIMGQLVLLGHA 117
Query: 121 RLT 123
+++
Sbjct: 118 KIS 120
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DFE++I+ + E++S++ + +G+ +R+ R++ K G+ LE I+ ++++D+
Sbjct: 488 WTVDFERVIDRLRESELDSIIYENFGQIGHRLVRVMRKMGK-LEEKHIAKLALIKQQDSR 546
Query: 415 KILYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
L + G + ++++ R LW + + +LD + A R+
Sbjct: 547 TTLVNMQMHGMVDIQEVPRDTGRMIVRTIHLWFCDEDRVTSLLLDRTYKAMSRCLQRLDV 606
Query: 473 ELDREKELLNLPADKRTGPLQDRY------NRIRKVRILLES--SQM-KLDDAILLFHDF 523
E R+ ++ L ++ + N++R++R E Q+ +LD+ + +F D+
Sbjct: 607 EKRRKANIIALSERTDVQGQEEAFLRPEQMNQLREIRAKEEDLLGQICRLDELVGIFQDY 666
>gi|71017949|ref|XP_759205.1| hypothetical protein UM03058.1 [Ustilago maydis 521]
gi|46098826|gb|EAK84059.1| hypothetical protein UM03058.1 [Ustilago maydis 521]
Length = 715
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 46/272 (16%)
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT-SSAEKKVKTKNSVP 311
+ +V R +F+ F LR + ID VR ++ AA V ++QA +S K V+ S P
Sbjct: 387 DPTVWLRVHFDRFDVHLRDEVMIDAVREKYNNTAAEVFRHLIQAGDASTNKSVRDVRSAP 446
Query: 312 LSLSSIYEEV---IKSEAG---RNMTLDHVRASLVQLGE--------------------- 344
+S++++ ++ + + G R+ D RASL E
Sbjct: 447 ISITTLCHKLPSDLSLQKGFDRRSFGKD--RASLPSKQEFLAEYSAIFSHSEDVSGRSKS 504
Query: 345 LSFVDASSDS-------------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 391
L + +SDS +I+F + E + + + +VV +++G A RI +L
Sbjct: 505 LRLMAPASDSTTKTAGGSKVASTLTIEFGNLAEGMRKDLLRNVVEEKFGTAAIRIMNILR 564
Query: 392 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 449
+ G+ LE IS V + + +L+ L ++++ T R F LW V+
Sbjct: 565 EKGK-LEEKHISKLALVSISETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEA 623
Query: 450 ILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+LD ++ + L R + E+ ++ LL
Sbjct: 624 KCRAWLLDHLYQSLARLGQRRNEEMRKQTPLL 655
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 50/168 (29%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRY-------------TELSDEQVKNA---- 54
H++ HFG + A+V LL++G LT + + R+ S+ N+
Sbjct: 16 HILLQHFGPIAARVGALLLKRGRLTIREISRFLNQQPTRTNRGPIDPFSNHSATNSKSTL 75
Query: 55 -------------------------------LLVLIQQNCVQAFTTEQPDGPKANTQYV- 82
++ LIQ C +T+ PD N ++
Sbjct: 76 VSAPIAGASSSSSTSDPNAPVPVPKLLIEQTVMTLIQHGCAWHSSTD-PDVADPNQEFFE 134
Query: 83 VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 130
+ + +L R+RF +++ I E Q +V+ +L+HG+L + DR
Sbjct: 135 ININEVLLRLRFGRYIGIAEDELGQTAARIVKLVLQHGKLQANDIIDR 182
>gi|302927138|ref|XP_003054435.1| hypothetical protein NECHADRAFT_75140 [Nectria haematococca mpVI
77-13-4]
gi|256735376|gb|EEU48722.1| hypothetical protein NECHADRAFT_75140 [Nectria haematococca mpVI
77-13-4]
Length = 662
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 25 TKHAAELCALLVNDLYGELPSRILIALLTKGRSTISQLVQHTALTPRFLRNGLAVLIQQN 84
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--LLEHG 120
+ T D T Y D + VR K L I+ +++ EL Q LL H
Sbjct: 85 LLYHHTDPDTD----VTSYQANADACYNLVRSGKILDIIERQYGTAERELAQTLMLLGHA 140
Query: 121 RLT-LKQMF-DRAKSSEKEGN--------LVDLDS-LRETLVKLVTAHYVE 160
R+ L F RA + + N L++ +S L LV+L+ A VE
Sbjct: 141 RIADLSHAFGSRAPKTNGQTNGDHESHDGLIESESHLNSVLVRLIRAEIVE 191
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/180 (17%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DF +++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 484 WTVDFTRLMTHLRETELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPSAALMKKTDVQ 542
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
+ + G + ++++ +R + W +++ LD+++ A L +
Sbjct: 543 GKMLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCMQTLQV 602
Query: 473 ELDREKELLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
E ++ +L+ + T ++YN+ +V+ L M+LD+ + + D+
Sbjct: 603 ERHNQRNILSFVEREDVQGKEEEVMTTEHYNKYNKHLEVQSKLLGQVMRLDELVSVLRDY 662
>gi|402591885|gb|EJW85814.1| hypothetical protein WUBG_03275, partial [Wuchereria bancrofti]
Length = 383
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 349 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 408
D++ + +DFEK I + VES + ++ A R+FRLL + G LE D + +
Sbjct: 171 DSAGGLFVVDFEKAIAMHCQRHVESAIREKLDVRAVRVFRLLMQKG-FLEEDHVEKLAML 229
Query: 409 EKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNL 466
+A K+ Y+L + G++LM+ + T A L+ V+ I+ ++ N+
Sbjct: 230 SSTEARKLCYQLLEKGFVLMKHVAKTNDFAPARTIYLYYVDLNIVAHNLYLFTCKVLRNV 289
Query: 467 SLRVSYELDREKELLN 482
+R +E K L++
Sbjct: 290 IIRRRHETKEHKVLID 305
>gi|164656160|ref|XP_001729208.1| hypothetical protein MGL_3675 [Malassezia globosa CBS 7966]
gi|159103098|gb|EDP41994.1| hypothetical protein MGL_3675 [Malassezia globosa CBS 7966]
Length = 572
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 352 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 411
S ++S+++ I+E Q + VV +R+G A RIF +L + G+ LE IS +
Sbjct: 389 STTFSVEYVNIVERIQLRMIRDVVVERFGSMAGRIFTILVEKGK-LEEKHISKVGLISMS 447
Query: 412 DAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLR 469
+ I +L+ L ++++ + R Q F LW V+ +LD+++ + LS R
Sbjct: 448 ETRDICSRLFAASILSLQEVPKSNERNPQRTFFLWFVDVLKCKSWLLDQLYKTLVQLSRR 507
Query: 470 VSYELDREKELLN 482
YE + LL
Sbjct: 508 RLYEQSQRTLLLQ 520
>gi|440631806|gb|ELR01725.1| hypothetical protein GMDG_00101 [Geomyces destructans 20631-21]
Length = 639
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G+L +++ L R+G T +K++T L+ QV++ L+VLIQQN + TEQ G
Sbjct: 19 YGELTSRIFAILQRRGRQTINTIKQHTGLTGRQVRHGLVVLIQQNLL-FHNTEQESG--- 74
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKE 137
+T Y D+ +R + L + + + ++VQ LL G + + + +S K
Sbjct: 75 STFYEANEDSAYFLLRSGRILETVEERYGVDARDVVQNLLLLGHTKVADLAEAYESKNKT 134
Query: 138 GN 139
N
Sbjct: 135 TN 136
>gi|326436836|gb|EGD82406.1| hypothetical protein PTSG_03049 [Salpingoeca sp. ATCC 50818]
Length = 327
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+ E + A+ ++ FG LVAKV + L K T Q + R TELS EQV+ +LLVL Q
Sbjct: 1 MMEVARECALAILEEDFGPLVAKVAKVLF-KCSCTMQTLVRLTELSPEQVRKSLLVLRQH 59
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ + ++T + NTQ +L R RF I+++++ +++ +L HG
Sbjct: 60 HLL-SYTETRRIFYTINTQTALL------RNRFPAMCHIVNEQYGDMEQLVLETVLLHG- 111
Query: 122 LTLKQMFDRAKSSEKEGNLVDLDSLRE 148
T+ FD S +E + SL E
Sbjct: 112 -TISTCFDFTASPCRECLRIIASSLGE 137
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 274 CIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLD 333
C+ + + L + AA V ++ S+ +++ VP++L+ I + +G +T D
Sbjct: 127 CLRIIASSLGEEAAAVAKVLM--FSNLHQELGNDRDVPVALAHITVHR-QLPSGSGLTPD 183
Query: 334 HVRASL---VQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
L V G F S Y D + + + + ++E +++ RYG+++ R+ RLL
Sbjct: 184 LTEKWLKLLVAEGSGMFHAGRSGLYYFDLKTAMHLVASLQLERILADRYGQESLRLIRLL 243
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILY-KLWKDGYLLMEKLVVTGARQSQ--FLLWKVN 447
++ L+ D+I VE+ A ++L +L++ G + +++ + R LW +
Sbjct: 244 LEN-HYLDQDQIVRMAMVERYAATRVLLNELFQAGLISCQEIPKSADRAPSRCHYLWHAD 302
Query: 448 RQILWKHVLDEMFHA 462
+ K + ++ HA
Sbjct: 303 HASVVKTLQAQLLHA 317
>gi|212537869|ref|XP_002149090.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces marneffei ATCC 18224]
gi|210068832|gb|EEA22923.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces marneffei ATCC 18224]
Length = 637
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FGDL ++ L++ G LT ++ ++++S +Q+ +AL L+Q
Sbjct: 1 MSQYAAELCTLLVEDNFGDLFGRIYSTLVQYGRLTLFRLRDHSQVSQKQLLHALAALVQM 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ V +T+ DG T Y D + +R K L ++ + +++ + HG
Sbjct: 61 HLVYHYTSTD-DG---FTYYEANIDGAYYLIRTGKVLEVVEERLGSYAAQVMAAIAYHGH 116
Query: 122 LTLKQM 127
+ + ++
Sbjct: 117 IMISEL 122
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 89/181 (49%), Gaps = 12/181 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
++ +++ ++ ++ E+E +V R+G+ A R+ ++L G+L E ++ + + + +KD
Sbjct: 458 AWYVEYRRLARQLRHLEIERIVGIRFGKLALRVIQILLSMGKLDEK-RLQEVSLISQKDL 516
Query: 414 PKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ ++G++ ++++ R LW + + +++L + + A R+
Sbjct: 517 RQVLAQMQENGFVDLQEIPKDAQRLPNRTVFLWFYDPDRVGRNLLHDTYKAMSRCIQRLR 576
Query: 472 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 522
+E R K+ L+ +++Y + R+ L+ +LDD + +F D
Sbjct: 577 FERTRLKDFLDKTERTDVRGDEEKYLTEAELETLRQWREKEGLMLGEIARLDDLVAVFRD 636
Query: 523 F 523
F
Sbjct: 637 F 637
>gi|19115041|ref|NP_594129.1| DNA-directed RNA polymerase III complex subunit Rpc82 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74623716|sp|Q9C106.1|RPC3_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3; AltName: Full=RNA
polymerase III subunit C82
gi|13624758|emb|CAC36920.1| DNA-directed RNA polymerase III complex subunit Rpc82 (predicted)
[Schizosaccharomyces pombe]
gi|76782165|gb|ABA54853.1| RNA polymerase III subunit Rpc82 [Schizosaccharomyces pombe]
Length = 591
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/317 (19%), Positives = 136/317 (42%), Gaps = 24/317 (7%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FGD + V LLR G LT +++ T L +++ AL+ L+Q
Sbjct: 1 MSQYAVELCEILVEEFFGDCCSAVASALLRHGRLTIPMLQKRTSLPGPKIRQALVSLMQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ V T + + T Y + I + +R K + ++SQ+ +Q+ +V+ L GR
Sbjct: 61 HMVLYVTV--IENVREVTYYETQWKEIYNILRKGKDVYLISQKLNQEAASVVKYLSTQGR 118
Query: 122 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 181
+ ++F+ A + +G+ + +++ L +L+ ++ L+P+ ++E R
Sbjct: 119 ARVLEVFN-AFDKKVDGSDEESRMMQKNLTELIYQKFL--LVVQPRHLIPVGDQEMQLRI 175
Query: 182 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 241
K K E + + V+ ++ +E + E ++ + P ++RK
Sbjct: 176 KHLDRRKSENVSEIKKNREVDDSVALEMLELRAADMSELQGLTRKPKESIPHPTKRRKRA 235
Query: 242 V-----LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
V + D + D+ + + + +R ++ G +VLS +
Sbjct: 236 VGSAPSVSTDLNNILDDDNSILVPDLSAHVR--------------INSGKLSVLSKNARL 281
Query: 297 TSSAEKKVKTKNSVPLS 313
T E+++ S+ S
Sbjct: 282 THWVERRIGKSTSLVYS 298
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
Query: 318 YEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD----SYSIDFEKIIEIAQNEEVES 373
YEE + A R + L+ L F+ + ++++F + ++ + E E+
Sbjct: 371 YEESVDENANRKSKVLAQHLELLADCSLKFISKIGNRGMGEWAVNFTHLTDMLRAIEYEN 430
Query: 374 VVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV 433
+ +++G A R+ R++ G++ E ++++ + ++D +L + + G L ++++
Sbjct: 431 FIEQKFGERAIRLLRIIKDKGKI-EEKQLANIALLRQRDLRTVLQAMAEIGALELQEVPR 489
Query: 434 TGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV------SYELDREKELLNLPA 485
+ R F LW + +LDE++H L +R+ +L + E +++
Sbjct: 490 SSDRAPSKTFFLWFHRPDRAYSLLLDELYHVIARLYMRLRDARAQRAQLIEKAERIDIKG 549
Query: 486 DKRTGPLQDRYNRIRKV-----RILLESSQMKLDDAILLFHD 522
++ + ++K+ ++LL++S +LDD +L+F D
Sbjct: 550 NEEQYLQKFEQAELKKLYSYEEKLLLQAS--RLDDMVLVFRD 589
>gi|399218957|emb|CCF75844.1| unnamed protein product [Babesia microti strain RI]
Length = 978
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
VI + +VA V + L+ P T ++ RYT++ + KNAL++L+ + V+ T P
Sbjct: 513 VIARQYNSVVASVAKYLMLNSPSTLYSISRYTKIELNETKNALILLVLHDIVRPDTRVHP 572
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 126
D Y VL +NIL+R+ LT++ + + +L+ ++G L L++
Sbjct: 573 D-TGTQVYYTVLLENILNRLLLPVVLTVVGHVYSKIHSQLLLQFAKYGYLCLEK 625
>gi|310798055|gb|EFQ32948.1| RNA polymerase III subunit RPC82 [Glomerella graminicola M1.001]
Length = 662
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T++G + H++ + G+L A++ L +G T + + T L+ Q+++ L VL+Q
Sbjct: 2 LVTKHGAELCAHLVNDICGELPARILGVLFSRGRSTIAQLVQTTALTPRQLRHGLAVLVQ 61
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE-- 118
QN V Q D Y D + +R K + ++ E+ E+VQ +++
Sbjct: 62 QNLV----YHQADSKNTIATYEANPDGCYNLIRAGKIVEMVGTEYGSPEQEVVQTIMQLG 117
Query: 119 HGRLT-LKQMFD 129
H R++ L Q F+
Sbjct: 118 HARVSDLLQAFE 129
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 103/233 (44%), Gaps = 21/233 (9%)
Query: 311 PLSLSSIYEEVIKSEAG---RNMTLDHVRASLVQLGE--LSFV----DASSDSYSIDFEK 361
P ++S E +K E G +D VR L+ L E F+ +++DF+
Sbjct: 431 PRAVSGSREAKVKFEDGPAPGTSRMDQVRQHLLLLSESRQGFLRHCGGQGRGQWTVDFKP 490
Query: 362 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
+IE + EV++V+ + +GR R+ R+L + G+L E + ++K + + +
Sbjct: 491 LIEGFKQTEVDAVIEQSFGRHGLRLTRILREKGKLDEK-MLPSLALMKKGEVQGKMLAMQ 549
Query: 422 KDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
G++ ++++ +R + W + + + ++D+ + L + RE+
Sbjct: 550 MAGFVDVQEVPRDASRTATRTMFFWFFDIERIEAQLVDDFYKTMLRCLQNLEVHRYRERN 609
Query: 480 LLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
+L+ + T ++Y+R ++ L M+LDD + +F D+
Sbjct: 610 ILSFVERNDVKGKEEEVMTAEHYNKYSRYLDLQSKLLGHVMRLDDLVAVFRDY 662
>gi|156848460|ref|XP_001647112.1| hypothetical protein Kpol_1050p114 [Vanderwaltozyma polyspora DSM
70294]
gi|156117795|gb|EDO19254.1| hypothetical protein Kpol_1050p114 [Vanderwaltozyma polyspora DSM
70294]
Length = 638
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT----RQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68
+ +H G+ A + L+ KG L +NV+ E+ + +K L+ LIQ C++ +T
Sbjct: 45 IAKSHLGERAAIIIGVLIAKGRLNINELNENVR---EMDRKSIKTTLVCLIQLRCIKYYT 101
Query: 69 TEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-CVELVQGLLEHGRLTLKQM 127
G K+ T Y D IL + L ++ F +++Q +L G +T+ Q
Sbjct: 102 ETTYSG-KSITHYYFNEDGILLWLYSGLILEEINSRFQSSIAAQIIQNILSIGSITVNQY 160
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 174
KS+E++ D + VKL Y+ P E L PI +
Sbjct: 161 VSNIKSNEEK------DEVYSAFVKLCENGYI--VPIKEIHLSPIGD 199
>gi|403224119|dbj|BAM42249.1| uncharacterized protein TOT_040000619 [Theileria orientalis strain
Shintoku]
Length = 471
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
+H++ +FG+ AK+ LL +GP+T + Y+E + V+N L++LI V+
Sbjct: 9 VIHILEYYFGEAAAKIASHLLLRGPVTLHKLVSYSEYDFKIVRNTLVILIHHGVVEYAMD 68
Query: 70 EQPDGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 127
G K+ T Y + +N+L + L ++ D+ +++ + ++G ++ ++
Sbjct: 69 ASQFGNKSVTHVLYSIKSENVLSILLIPFLLHTAKEKVDENTFKILFHIAKYGIVSPGKI 128
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS 165
+ + E ++ E++ KL+ Y+ RC S
Sbjct: 129 RESFEDMETH-------TIFESISKLINEGYI-RCVDS 158
>gi|342883381|gb|EGU83894.1| hypothetical protein FOXB_05608 [Fusarium oxysporum Fo5176]
Length = 633
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N + VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLAQHTSLTPRYLRNGIAVLIQQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE--HG 120
+ T D T Y D + VR K L ++ ++ EL Q L++ H
Sbjct: 64 LLYHHTDANTD----ITYYQADADACYNLVRSGKILNVIENQYGIAERELAQTLMQLGHA 119
Query: 121 RLT-LKQMF-DRAKSSEKEGN--------LVDLDS-LRETLVKLVTAHYVE 160
R+ L Q F RA N L++ +S L LV+L+ A VE
Sbjct: 120 RIADLSQAFGSRAPKLNGHTNGEHKTHDGLIESESHLNSVLVRLIRAEIVE 170
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DF +++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 455 WTVDFSRLVGKLREIELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQ 513
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
+ + G + ++++ +R + W +++ LD+++ A L +
Sbjct: 514 GKMLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERTQTQALDDIYKAMLRCLQTLEV 573
Query: 473 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
E +E+ +L+ K T ++YNR V+ L M+LD+ + + D+
Sbjct: 574 ERHKERNILSFVERKDVQGKEEEVMTAEHYNKYNRHLGVQDKLLGQVMRLDELVSVLRDY 633
>gi|358378220|gb|EHK15902.1| hypothetical protein TRIVIDRAFT_80209 [Trichoderma virens Gv29-8]
Length = 640
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ L KG T + YT+L Q++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILAALFTKGRSTITQLGLYTQLGPRQIRNGLGVLIQQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
+ T D T Y + VR K L ++ ++ +LVQ LL
Sbjct: 64 LLYHHT----DADTKRTTYEANPGACYNLVRSGKILEMIESQYGTAERDLVQTLL 114
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 21/223 (9%)
Query: 318 YEEVIKSEAGRNMTLDHVRASLVQLGELS--FV----DASSDSYSIDFEKIIEIAQNEEV 371
+EE S R LD +R L+ L E FV +++DF++++E + E+
Sbjct: 422 FEEAATSTDNR---LDQMRQHLLLLAESKHRFVRHCGAQGRGQWTVDFDQVMERLRETEL 478
Query: 372 ESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 431
++ + + +GR R+ R+L + G+L E + ++K D + + G + ++++
Sbjct: 479 DASIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKTDVQAKMLAMQMAGLVDVQEV 537
Query: 432 VVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK-- 487
R + W +R+ +LD+++ A + + E RE+ +L+ K
Sbjct: 538 PKDNTRVANRTLFFWFFDRERSQAQILDDLYKAMVRALQTLQVERHRERNILSFVERKDV 597
Query: 488 -------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
T ++YNR + + L M+LD+ + F ++
Sbjct: 598 MGKEEEVMTAEHYNKYNRHLEEQNKLLGQVMRLDEMVSTFREY 640
>gi|396478432|ref|XP_003840531.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Leptosphaeria maculans JN3]
gi|312217103|emb|CBX97052.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Leptosphaeria maculans JN3]
Length = 663
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
H++ + +G+L A+V L R G T + R + L+ Q+K L++L+QQ+ V
Sbjct: 16 THLVEDVYGELAARVYSILARHGRQTLAAIARASYLTGRQIKYGLVILLQQHLVFHSGDH 75
Query: 71 QPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
P T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 76 TP-----VTYYEIDWQNSYSIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 350 ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
A + I+F +I + EVE+ + R G+ ++ R L K GRL E +T +
Sbjct: 473 AGFSQWHIEFNEIAKQLIQTEVENTIYARKGKLGVKLIRALRKKGRLDER-ATCNTMMMS 531
Query: 410 KKDAPKILYKLWKDGYLLME---KLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNL 466
D I+ L G++ + K+ A+ S L+W +RQ + +L + + + +
Sbjct: 532 ATDIRGIINDLTVQGFVQTQEIPKVERREAKHSLHLVW-YDRQRAREKLLHDTYKGMVRI 590
Query: 467 SLRVSYELDREKELL 481
R+++E D+ + LL
Sbjct: 591 LQRIAFERDKVQPLL 605
>gi|443898635|dbj|GAC75969.1| RNA polymerase III (C) subunit [Pseudozyma antarctica T-34]
Length = 715
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 50/171 (29%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRY----------------TELSDEQVKNAL 55
HV+ HFG + A++ LL++G LT + ++R+ T S K+ L
Sbjct: 16 HVLLVHFGPIAARIGALLLKRGRLTIREIQRFLNQAPTRTNRGPTDPFTNASTTHTKSTL 75
Query: 56 --------------------------------LVLIQQNCVQAFTTEQPDGPKANTQYV- 82
L LIQ C +T+ PD + ++
Sbjct: 76 VSAPIAGASTSYNTGDPNAPVPVPKLLIEQTILTLIQHGCAWHSSTD-PDVADPSQEFFE 134
Query: 83 VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 133
+ +++L R RF +++ I E +V+ +L+HG+L + DR S
Sbjct: 135 ININDVLLRPRFGRYIGIAEDELGDTSARIVKLVLQHGKLQASDIIDRIAS 185
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 42/270 (15%)
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT-SSAEKKVKTKNSVP 311
+ SV R +++ F +R + +D VR ++ AA V ++ A SS + V+ S P
Sbjct: 387 DPSVWLRVHYDRFDVHVRDEIMVDAVREKYNNTAAEVFRQLIHAGDSSMRRSVRDVRSAP 446
Query: 312 LSLSSIYEEV----------------------------------IKSEA----GRNMTLD 333
+S++++ ++ I S A G++ T
Sbjct: 447 ISITTLAHKLPSELSLQKGFDRRSFGKDKSALPTRQEFLAEYCAIFSHAEDVSGKSKTSR 506
Query: 334 HVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKS 393
+ + + + + S +++F + E + + + +VV ++G A RI +L
Sbjct: 507 LMAPASDSTTKTAGGSKVASSLTVEFANVAERMRRDLLRNVVEDKFGGAAIRIMNILRDK 566
Query: 394 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQIL 451
G+ LE IS V + + +L+ L ++++ T R F LW V+
Sbjct: 567 GK-LEEKHISKLALVSISETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAKC 625
Query: 452 WKHVLDEMFHAALNLSLRVSYELDREKELL 481
+LD ++ + +S R + E+ R+ LL
Sbjct: 626 RAWLLDHLYQSLARISQRRNDEMRRQLPLL 655
>gi|326479889|gb|EGE03899.1| DNA-directed RNA polymerase III subunit RPC3 [Trichophyton equinum
CBS 127.97]
Length = 649
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 464 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDE-KRLQEISL 522
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 465
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 523 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 582
Query: 466 LSLRVSYELDREKELL 481
R++YE + K L+
Sbjct: 583 CLQRLAYERSKLKPLI 598
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L+ G PL R + T LS Q+K+ L VLI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVHHGRQPLMR--IVHNTHLSPRQIKHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 116
QQ + +T + DG +AN + L VR L + + ++V +
Sbjct: 59 QQQLIFHYTGFE-DGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKVVSTI 111
Query: 117 LEHGRLTLKQM 127
L G + + +
Sbjct: 112 LSLGHVKISHL 122
>gi|327300751|ref|XP_003235068.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton rubrum
CBS 118892]
gi|326462420|gb|EGD87873.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton rubrum
CBS 118892]
Length = 651
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 466 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISL 524
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 465
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 525 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 584
Query: 466 LSLRVSYELDREKELL 481
R++YE + K L+
Sbjct: 585 CLQRLAYERSKLKPLI 600
>gi|158291041|ref|XP_312561.3| AGAP002394-PA [Anopheles gambiae str. PEST]
gi|157018184|gb|EAA08103.3| AGAP002394-PA [Anopheles gambiae str. PEST]
Length = 506
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I HFG++V V + L + R T L+ +V +L +LI+ N V F+ +
Sbjct: 12 IIEQHFGEVVRTVVDDLFASIAKPLSQIIRSTGLTKSEVCKSLAILIKFNMV-GFSLNKA 70
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
+ +Y + +D I+ +R+ +++ ++ +F + L++ LL G + ++
Sbjct: 71 ---RTGYEYRLHYDRIVMVLRYPRYVHLIQTKFGHESAVLMEELLRSGTQCASYIIVKSM 127
Query: 133 SS--EKEGNLVDLDSLRETLVKLVTAHYVERCPASEP 167
S+ K+ N + L LR+ L +Y+ R P +P
Sbjct: 128 SNVDGKDNNTLAL--LRDKFADLAQENYITRAPEPKP 162
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 347 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
F ++++ ++I E +E+++ ++YG A RIFR++ + + +E + I
Sbjct: 299 FDTKGGGQFTVNVKRIFEQLTWACIENIIVEKYGSKAARIFRVV-RMKKYVEQEDIQKEA 357
Query: 407 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHA 462
V KDA + YKL ++ +L ++ G S F L+ VN+ + +L+ + A
Sbjct: 358 MVPAKDAKLLTYKLLEENFLQIQTFRKPGGGNSGAPKSFFLFYVNQPQIVSMLLELSYKA 417
Query: 463 ALNLSLRVSYELDREKELL 481
N R++++ K L+
Sbjct: 418 LYNSITRLTHDKTVNKRLI 436
>gi|302658985|ref|XP_003021188.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Trichophyton verrucosum HKI 0517]
gi|291185075|gb|EFE40570.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Trichophyton verrucosum HKI 0517]
Length = 683
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 498 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISL 556
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 465
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 557 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 616
Query: 466 LSLRVSYELDREKELL 481
R++YE + K L+
Sbjct: 617 CLQRLAYERSKLKALI 632
>gi|242808055|ref|XP_002485084.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces stipitatus ATCC 10500]
gi|218715709|gb|EED15131.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces stipitatus ATCC 10500]
Length = 634
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 350 ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S ++ +++ ++ ++ E+E +V R+G+ A R+ R+L G+L E ++ + + +
Sbjct: 451 GSVPAWYVEYRRLARQLRHFEIERIVGIRFGKLALRVIRILLSVGKLDEK-RLQEVSLIA 509
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
+KD ++L ++ ++G++ ++++ R LW + + ++VL +++ A
Sbjct: 510 QKDLRQVLAQMQENGFVDLQEIPKDAQRIPNRTVYLWFYDPDRVGRNVLHDIYKAMSRCL 569
Query: 468 LRVSYELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAIL 518
R+ +E +R K+ L+ ++ Y + R+ L+ +LDD +
Sbjct: 570 QRLRFERNRLKDFLDKTERIDVRGNEEEYLTEAELETLRQWREKEALMLGEISRLDDLVA 629
Query: 519 LFHDF 523
+F DF
Sbjct: 630 VFRDF 634
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FGDL ++ L++ G L+ ++ +++++ +Q+ +AL L+Q
Sbjct: 1 MSQYAAELCTLLVEDNFGDLFGRIYSTLVQYGRLSLLRLREHSKVTHKQLLHALAALVQM 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ V FT+ DG T Y D + +R K L ++ ++ + HG
Sbjct: 61 HLVHHFTS-IDDGF---TYYEANVDGAYYLIRMGKILEVVEDRLGSYAARVMSAIAYHGH 116
Query: 122 LTLKQM 127
+ + +
Sbjct: 117 IMISDL 122
>gi|326468627|gb|EGD92636.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton
tonsurans CBS 112818]
Length = 613
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 428 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDE-KRLQEISL 486
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 465
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 487 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 546
Query: 466 LSLRVSYELDREKELL 481
R++YE + K L+
Sbjct: 547 CLQRLAYERSKLKPLI 562
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L+ G PL R + T LS Q+K+ L VLI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVHHGRQPLMR--IVHNTHLSPRQIKHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 116
QQ + +T + DG +AN + L VR L + + ++V +
Sbjct: 59 QQQLIFHYTGFE-DGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKVVSTI 111
Query: 117 LEHGRLTLKQM 127
L G + + +
Sbjct: 112 LSLGHVKISHL 122
>gi|302418969|ref|XP_003007315.1| RNA polymerase III subunit Rpc82 [Verticillium albo-atrum VaMs.102]
gi|261352966|gb|EEY15394.1| RNA polymerase III subunit Rpc82 [Verticillium albo-atrum VaMs.102]
Length = 665
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
+++++ + HV+ + FG+L A++ LL KG T + R+T L Q+++ L VL+Q
Sbjct: 4 LISKHAAELCAHVVNDLFGELPARIIAVLLSKGRSTIPQLVRHTSLPPRQMRHGLAVLVQ 63
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE-- 118
QN + + T Y D + +R K + ++ E+ E+ Q +++
Sbjct: 64 QNLLYYHAI----AGSSVTSYEANPDACYNLIRSGKIIDMVGTEYGLAEQEVFQTIMQLG 119
Query: 119 HGRLT-LKQMF 128
H R++ L Q F
Sbjct: 120 HARVSDLVQAF 130
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 332 LDHVRASLVQLGE--LSFV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 385
LD +R L+ L E FV +++DF+ ++E + EV++V+ + +GR R
Sbjct: 458 LDEMRQHLLLLAESPQGFVRHCGTQGRGQFTVDFKPLMESLRQVEVDAVIEQTFGRHGLR 517
Query: 386 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLL 443
+ R+L G+L E + ++K D + L G++ ++++ +R +
Sbjct: 518 LTRILRAKGKLDEK-TLPGLALMKKSDVQGKMLALQMAGFVDVQEVPRDNSRTANRTMFF 576
Query: 444 WKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKR----------TGPLQ 493
W + + ++D+++ L + + RE+ +L+ D++ T
Sbjct: 577 WFFDATRVDNQLMDDVYKTMLRCLQTLDVQRHRERNILSF-VDRKDVKGKEEEVMTAEHY 635
Query: 494 DRYNRIRKVRILLESSQMKLDDAILLFHDF 523
++Y++ ++ L M+LD+ I +F D+
Sbjct: 636 NKYSQFLDLQSKLLGQVMRLDELISVFKDY 665
>gi|302505627|ref|XP_003014520.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Arthroderma benhamiae CBS 112371]
gi|291178341|gb|EFE34131.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Arthroderma benhamiae CBS 112371]
Length = 684
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 499 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISL 557
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 465
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 558 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 617
Query: 466 LSLRVSYELDREKELL 481
R++YE + K L+
Sbjct: 618 CLQRLAYERSKLKALI 633
>gi|296809077|ref|XP_002844877.1| RNA polymerase III subunit Rpc82 [Arthroderma otae CBS 113480]
gi|238844360|gb|EEQ34022.1| RNA polymerase III subunit Rpc82 [Arthroderma otae CBS 113480]
Length = 638
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F ++ ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD
Sbjct: 459 TWAVEFRHLVRQLRHLEIERLVEARYGTVAVRVLRVLADKGRLDEK-RLQEISLMPSKDL 517
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
+IL +L G++ ++++ RQ LW + + ++++ + R++
Sbjct: 518 RQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLVEDAYKCMARCLQRLA 577
Query: 472 YELDREKELL 481
YE + K L+
Sbjct: 578 YERGKLKALI 587
>gi|346321439|gb|EGX91038.1| RNA polymerase III Rpc82, C -terminal [Cordyceps militaris CM01]
Length = 642
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DF K++ + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 464 WTVDFSKVLNRLKETELDAYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKSDVQ 522
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
+ + G + ++++ +R + W +R+ VLD+++ A + +
Sbjct: 523 LKMIAMQMAGLVDVQEVPKDNSRMANRTLFFWFFDRERTESQVLDDIYKAMVRCLETLQV 582
Query: 473 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
E +E+ +L+ K T D+YN V L M+LD+ + +F D+
Sbjct: 583 ERHKERNILSFVERKDVQGKEEEVMTTEHYDKYNDHLAVEEKLLGQVMRLDEMVAVFRDY 642
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILATLLTKGRSTIAQLAQHTSLPPRFLRNGLSVLIQQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
+ T PD T Y D R K L + +F +LVQ LL+ G
Sbjct: 64 LLYHHT--DPD--SRGTSYEANPDACYTLTRSGKILEAIESQFGTAERDLVQTLLQLG 117
>gi|315048453|ref|XP_003173601.1| DNA-directed RNA polymerase III subunit RPC3 [Arthroderma gypseum
CBS 118893]
gi|311341568|gb|EFR00771.1| DNA-directed RNA polymerase III subunit RPC3 [Arthroderma gypseum
CBS 118893]
Length = 651
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 466 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGTVAVRVLRVLADKGRLDEK-RLQEISL 524
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 465
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 525 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLVEDTYKSMAR 584
Query: 466 LSLRVSYELDREKELL 481
R++YE + K L+
Sbjct: 585 CLQRLAYERGKLKTLI 600
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L++ G PL R + T LS QVK+ L +LI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVQHGRQPLMR--IVHNTNLSPRQVKHGLAILI 58
Query: 60 QQNCVQAFTTEQPDGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 116
QQ + +T + DG +AN + L VR L + + ++V +
Sbjct: 59 QQQLIFHYTGFE-DGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKVVSAI 111
Query: 117 LEHGRLTLKQM 127
L G + + +
Sbjct: 112 LSLGHVKISHL 122
>gi|401424695|ref|XP_003876833.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493076|emb|CBZ28361.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 604
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 387 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQETVCERVVYSRYGVLGVRIMKLL 440
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 445
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 441 LQH-HFLEERTLAEQSVATYVKVREVLHQMFKDGFLLQQEVPRTSALVERPAKASVYLWG 499
Query: 446 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
++ W L + L +L +++E RE +
Sbjct: 500 LS----WSATLLPVVRERLAKTLTIAWEKLREAQ 529
>gi|358396963|gb|EHK46338.1| hypothetical protein TRIATDRAFT_195782, partial [Trichoderma
atroviride IMI 206040]
Length = 614
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 95/209 (45%), Gaps = 18/209 (8%)
Query: 332 LDHVRASLVQLGELS--FV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 385
LD +R L+ L E FV +++DF++++ ++ E+++ + + +GR R
Sbjct: 407 LDQMRQHLLLLSESKHRFVRHCGTQGRGQWTVDFDQVMGRLRDTELDASIEQSFGRHGLR 466
Query: 386 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLL 443
+ R+L + G+L E + + ++K D + + G + ++++ R +
Sbjct: 467 LTRILREKGKLDEK-MLPSASLMKKTDVQAKMLAMQMAGLVDVQEVPKDNTRVANRTLFF 525
Query: 444 WKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK---------RTGPLQD 494
W +R +LD+++ A + + E RE+ +L+ K T +
Sbjct: 526 WFFDRDRSQAQILDDLYKAMVRCLQTLQVERHRERNILSFVERKDVMGKEEEVMTAEHYN 585
Query: 495 RYNRIRKVRILLESSQMKLDDAILLFHDF 523
+YN+ + + L M+LD+ + +F D+
Sbjct: 586 KYNKHLEEQNKLLGQMMRLDEVVSIFRDY 614
>gi|308499707|ref|XP_003112039.1| hypothetical protein CRE_29652 [Caenorhabditis remanei]
gi|308268520|gb|EFP12473.1| hypothetical protein CRE_29652 [Caenorhabditis remanei]
Length = 543
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/518 (19%), Positives = 207/518 (39%), Gaps = 86/518 (16%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V ++ + FG +V+KV E LL + L K ++ +K +L LI
Sbjct: 5 KYETQMCVIIVEDIFGKIVSKVLETLLNESCQLATLVYKLKGQIKTVLIKKSLSTLINF- 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
F T D T YV ++I + + + I + + L+ GRL
Sbjct: 64 ---GFVTFSLD-TNNRTTYVADSEHIQYMISAPRACLIAKTLYGPSAESICIELISQGRL 119
Query: 123 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 182
T+ + R K++++ + +++ + +LV ++++ R PA E SE G
Sbjct: 120 TISETIRRIKATDETA---EFSNIKHSFEELVKSNFLIRVPAVE------SEIHGCP--- 167
Query: 183 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 242
Q + + P A+ +++ E V E +++ + KRK D
Sbjct: 168 ----------------QFITSFDPF-ALPTAIMEKKEEKVDE---STDTASTSRKRKADS 207
Query: 243 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 302
D + ++ N+ F LR + ID++ + G+ ++ M E
Sbjct: 208 TPSDA-----DAGQYWKINWSRFNGYLRDELIIDYL---IGGGSTATMTHMNHKKGEEED 259
Query: 303 KVKTK-------------NSV---PLSLSSIYEEVI----------------KSEAGRNM 330
+T+ N V PLS+ SI + E +
Sbjct: 260 GDRTQYITQNVAHLMFKMNEVRAKPLSMDSITVSITDLQRLVRENELNLSKPDIEFACQI 319
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
+D + ++GE ++ Y++D I ES++ +++ A R+ RLL
Sbjct: 320 LVDESDGIVRKVGE-----SNGGLYTVDIRHAIRQICRHHCESLIREQFEGRAIRVMRLL 374
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNR 448
++ L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+ V+
Sbjct: 375 -ENRHFLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLYYVDL 433
Query: 449 QILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 486
+ +++ NL +R +E K+LL+ A+
Sbjct: 434 PRTVRGLVEYTCKLVRNLVIRQRHERTENKQLLDKDAN 471
>gi|332025342|gb|EGI65510.1| DNA-directed RNA polymerase III subunit RPC3 [Acromyrmex
echinatior]
Length = 503
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 93/505 (18%), Positives = 198/505 (39%), Gaps = 96/505 (19%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+ ++ K + ++ FG +V ++ LL G T + T LS ++K L VLI+
Sbjct: 1 MRDFYNKLCLLLLEESFGPIVGQIGNNLLY-GTKTLPAIHFGTHLSKIKIKEGLSVLIKF 59
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
F T + + +Y + + I+ +R+ +++ + + + +L++G
Sbjct: 60 ----GFVTYHKNEDNLHVEYTIHQNKIIMILRYPRYILFAKTYCGDEGEIMFEEVLKNGY 115
Query: 122 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 181
+T E ++K T +E+ P++ S +E P+
Sbjct: 116 ITAS----------------------EVIIK--TYKRIEQAPSN-------STDEPPS-- 142
Query: 182 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 241
I + + + + +V+ M F ++ EK K+D
Sbjct: 143 --------ISDLKNVFELLVKNQFLMNCTSFDTMSE----------------DTEKPKYD 178
Query: 242 VLELDECGVA----------DEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 291
+ LD ++ ++ V ++ NF+ F + LR + I V D ++
Sbjct: 179 LPNLDLLAISKSLKGQNVEFSDRKVYWKVNFDRFTQDLRDQTVISAVTRKFDKETGELMR 238
Query: 292 AM-----LQATSSAEKKVKTKNSVPLSLSSIYEEV--IKSEAGRNMTLDHVRASLVQLGE 344
M L+ S A+ S P+ + I E+V + E ++R L++
Sbjct: 239 EMINLMYLRTASWAD------TSNPIPYTEIKEQVKKLNYEILERYIDQYLR--LLEEDR 290
Query: 345 LSFV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETD 400
F+ D+ YS++ + + +E++V++R+G A RIFRL+ + +
Sbjct: 291 TQFIKRVGDSGGGQYSVNMKNAFKELTWTTLENIVTERFGSKAARIFRLVRYEVD-VSLE 349
Query: 401 KISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHV----L 456
+I + K+A + Y L ++ Y+ ++L +G + I + +
Sbjct: 350 QIQKLAMIPAKEAKFLTYILSQEKYIQTQELKKSGTSSGPTTKLPYHFCIDLNEIVEMEI 409
Query: 457 DEMFHAALNLSLRVSYELDREKELL 481
+ +HA N+ +R YE + K ++
Sbjct: 410 EHCYHALYNIIIRREYESNSNKRMI 434
>gi|224002599|ref|XP_002290971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972747|gb|EED91078.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 579
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+ I ++++ ++ + V++ +G A RI +L G + E+D I++ + K+A
Sbjct: 404 FEISTRQLLQRMRDRILHRVLTTHHGLAAARIVSILQVKGHM-ESDSIAEDAMMPAKEAR 462
Query: 415 KILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
+IL++L +D ++ + + +T S LW V L V++ ++ A L+L LR +
Sbjct: 463 EILHRLHRDKFINLFDMHMTKQHNSGTAIYLWNVIPSRLMNTVVNNVYTAILHLRLRRQH 522
Query: 473 ELDREKELLNLPADKRTGPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 523
E++ K+ ++ K G ++ +Y+ K L+ + ++LD+ +++ DF
Sbjct: 523 EVEVGKDWMDRA--KEAGATEENVHEDDKRKYHAFCKGLDRLDFACLQLDETLMVLKDF 579
>gi|389601866|ref|XP_001566025.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505218|emb|CAM45549.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 602
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
T+ RA LV+ + SD Y++D +++ Q E VV RYG RI RLL
Sbjct: 385 TMPSTRALLVK------PQSESDLYALDDVTAVQLLQEAVCERVVYSRYGVLGVRIMRLL 438
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 445
+ LE +++ + A ++L++++KDG+LL +++ T A ++ LW
Sbjct: 439 LQH-HFLEERTLAEQSVATYVKAREVLHRMFKDGFLLQQEVPRTSALVERSAKASVYLWG 497
Query: 446 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
++ W L L +L +++ RE +
Sbjct: 498 LS----WSATLLPAVRERLAKTLTIAWVKLREAQ 527
>gi|312078385|ref|XP_003141715.1| hypothetical protein LOAG_06131 [Loa loa]
Length = 364
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 80/409 (19%), Positives = 161/409 (39%), Gaps = 66/409 (16%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
V ++ +HFG + A V LL + P+ Q ++ + +++ A+++L Q +Q
Sbjct: 9 CVEILEDHFGPIAAAVGSVLLNEAVPLPVIFQRLR--NQFRIPEIRRAMVILEQHGILQ- 65
Query: 67 FTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 126
FT ++ + Q + +IL VR A+ + + + + + ++ GRLT
Sbjct: 66 FTQDERQRIIYSAQVI----DILRLVRSARCSFVAKTLYGEIAEAICEEIISQGRLTCSS 121
Query: 127 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 186
R + + V ++ ++ +L +V R P E G
Sbjct: 122 CIRRVVARLE----VSINEVKTAFARLAETQFVMRYPKVESNFC------------GCPI 165
Query: 187 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 246
+K +P + ++ A +E +V K + N++ E
Sbjct: 166 FEKHPDPFIMPDVILNA------------KKLEINVDSKSRKRKNLSNEEDDP------- 206
Query: 247 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA--HLDDGAANVLSAMLQATSSAEKKV 304
+ ++ + N+ F R LR + ++ + + + L +L+ + ++
Sbjct: 207 ------DGNIYWHLNYIRFERYLRDEMVVNAYESGDAVHENCVKTLRILLKIS-----EI 255
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDH--VRASLVQLGELSFV-----DASSDSYSI 357
K +S S +V+++ ++L + +L L E + D++ + I
Sbjct: 256 KADSSAAASFPISIHDVLRAANSNEVSLGKHDIEVALRLLCESGGIVRKVGDSAGGLFVI 315
Query: 358 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
DFEK I VES + +R A R+FRLL + G LE D +S T
Sbjct: 316 DFEKAIATHCQRHVESAIRERLDMRAVRVFRLLMQKG-FLEEDHVSFMT 363
>gi|225713960|gb|ACO12826.1| DNA-directed RNA polymerase III subunit RPC3 [Lepeophtheirus
salmonis]
Length = 497
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 349 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 408
D+ Y ++F+ + E + ++VV +++G A RIFR++ +S + +E +++ +
Sbjct: 285 DSGGGEYHMNFKSLFEQLVHATFDNVVLEKFGSKALRIFRVI-RSHKRIEESALANLVMI 343
Query: 409 EKKDAPKILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALN 465
K+ + YKL ++ ++ +++L V + A F L+ ++ + + V + F A N
Sbjct: 344 PAKETKLLTYKLLENNFIQLQELRKSVASNAVAKGFYLFYIDTDSVARMVRELCFKAIGN 403
Query: 466 LSLRVSYELDREKELLN 482
R +E + LL+
Sbjct: 404 CIFRKDHEFSIHQRLLD 420
>gi|346979163|gb|EGY22615.1| RNA polymerase III subunit Rpc82 [Verticillium dahliae VdLs.17]
Length = 666
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
+++++ + HV+ + FG+L A++ LL KG T + R+T L Q+++ L VL+Q
Sbjct: 4 LISKHAAELCAHVVNDLFGELPARIIAVLLSKGRSTIPQLVRHTSLPPRQMRHGLAVLVQ 63
Query: 61 QNCV--QAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 118
QN + A +AN D + VR K + ++ E+ E+ Q +++
Sbjct: 64 QNLLYHHAIAGSSVASYEANP------DACYNLVRSGKIIDMVGTEYGLAEQEVFQTIMQ 117
Query: 119 --HGRLT-LKQMF 128
H R++ L Q F
Sbjct: 118 LGHARVSDLVQAF 130
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 332 LDHVRASLVQLGE--LSFV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 385
LD +R L+ L E FV +++DF+ ++E + EV++V+ + +GR R
Sbjct: 459 LDEMRQHLLLLAESPQGFVRHCGTQGRGQFTVDFKPLMESLRQVEVDAVIEQTFGRHGLR 518
Query: 386 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLL 443
+ R+L G+L E + ++K D + L G++ ++++ +R +
Sbjct: 519 LTRILRAKGKLDEK-TLPGLALMKKSDVQGKMLALQMAGFVDVQEVPRDNSRTANRTMFF 577
Query: 444 WKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKR----------TGPLQ 493
W + + ++D+++ L + + RE+ +L+ D++ T
Sbjct: 578 WFFDATRVDNQLMDDVYKTMLRCLQTLDVQRHRERNILSF-VDRKDVKGKEEEVMTAEHY 636
Query: 494 DRYNRIRKVRILLESSQMKLDDAILLFHDF 523
++Y++ ++ L M+LD+ I +F D+
Sbjct: 637 NKYSQFLDLQSKLLGQVMRLDELISVFKDY 666
>gi|402076616|gb|EJT72039.1| hypothetical protein GGTG_11287 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 577
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 26/187 (13%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DF +I Q E+++V+ ++ GR + R+ R+L K G+ E + + K
Sbjct: 399 WTVDFRPLIRKIQESELDTVIERKIGRHSLRLIRILRKRGKADEK-SLPMQAMMAKGTVH 457
Query: 415 KILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNL------ 466
KI+ ++ G++ ++++ R +S LW + +LD + L
Sbjct: 458 KIMLEMQMHGFVDVQEVPKDNTRNAKSTIFLWFCVTDLSLTQLLDNTYKTMLRCLQVRDV 517
Query: 467 -------SLRVSYELD---REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDA 516
LR D REKE L DRY+R R + + M+LDD
Sbjct: 518 HRQNAREVLRFVGRADVKGREKEALE-------KKYFDRYDRYRSIEDKMLGHVMRLDDL 570
Query: 517 ILLFHDF 523
+ + +D+
Sbjct: 571 VGVLNDY 577
>gi|380474589|emb|CCF45694.1| RNA polymerase III subunit Rpc82 [Colletotrichum higginsianum]
Length = 417
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 106/238 (44%), Gaps = 21/238 (8%)
Query: 306 TKNSVPLSLSSIYEEVIKSEAG---RNMTLDHVRASLVQLGE--LSFV----DASSDSYS 356
+++ P + S E +K E G +DHVR L+ L E F+ ++
Sbjct: 181 SEDDEPRTASGSREARVKFEDGPAPGASRMDHVRQHLLLLAESRQGFLRHCGGQGRGQWT 240
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+DF+ +I+ + EV++V+ + +GR R+ R+L + G+L E + ++K +
Sbjct: 241 VDFKPLIDGFKQTEVDAVIEQSFGRHGLRLTRILREKGKLDEK-MLPSLALMKKGEVQGK 299
Query: 417 LYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 474
+ + G++ ++++ +R + W + + ++D+ + L +
Sbjct: 300 MLAMQMAGFVDVQEVPRDASRTATRTMFFWFFDIERTEAQLVDDFYKTMLRCLQNLEVHR 359
Query: 475 DREKELLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
RE+ +L+ + T ++Y+R +++ L M+LDD + +F D+
Sbjct: 360 YRERNILSFVERNDVKGKEEEVMTAEHYNKYSRYLELQSKLLGHVMRLDDLVAVFRDY 417
>gi|322710712|gb|EFZ02286.1| DNA-directed RNA polymerase III subunit rpc3 [Metarhizium
anisopliae ARSEF 23]
Length = 680
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 322 IKSEAG---RNMTLDHVRASLVQLGELS--FV----DASSDSYSIDFEKIIEIAQNEEVE 372
+K E G ++ LD +R L+ L E FV +++DFE +++ + E++
Sbjct: 460 VKFEDGAIAKDSRLDQMRQHLLLLAESKHRFVRHCGTQGRGQWTVDFELLMDRLRESELD 519
Query: 373 SVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432
+ + + +GR R+ R+L + G+L E + ++K D + + G + ++++
Sbjct: 520 AYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKGDVQGKMLAMQMAGLVDVQEVP 578
Query: 433 VTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK--- 487
+R + W + + + +LD+++ L + E +E+ +L K
Sbjct: 579 KDNSRLANRTLFFWFFDGERVQSQLLDDVYKGMLRCLQTLDVERHKERNILTFVERKDVK 638
Query: 488 ------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
T ++YNR + + L M+LDD + +F D+
Sbjct: 639 GKEEEVMTAEHYNKYNRHLEGQQKLLGQVMRLDDMVAVFRDY 680
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVV 83
++ L KG T + ++ L ++N L VLIQQN + +T PD T Y
Sbjct: 52 RILVALFTKGRCTLSQLVQHVSLGPRHLRNGLGVLIQQNLLYHYT--DPD--TGGTSYEA 107
Query: 84 LFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
D + VR K L +++ ++ +LVQ L++ G
Sbjct: 108 NSDACYNLVRSGKILEVINSQYGTAERDLVQTLMQLG 144
>gi|294867271|ref|XP_002765036.1| hypothetical protein Pmar_PMAR004492 [Perkinsus marinus ATCC 50983]
gi|239864916|gb|EEQ97753.1| hypothetical protein Pmar_PMAR004492 [Perkinsus marinus ATCC 50983]
Length = 699
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 42/162 (25%)
Query: 10 AVH-----VITNHFGDLVAKVCECLLRKGPLTRQNVKRYT--ELS-------DEQV---- 51
AVH +IT+ FG V+ V CLL +GP+ + +Y ELS D +V
Sbjct: 26 AVHKLCCDIITDQFGPAVSAVASCLLSRGPMRFPELSKYVNEELSWPLDLRTDAKVPHSM 85
Query: 52 ------------KNALLVLIQQNCVQAFTTEQPDGPK-----ANTQYVVLF----DNILH 90
++AL++L+Q N + Q P A Q++VL+ ++
Sbjct: 86 HEITNRMTWSCIRDALMILLQNNIAVSHMVRQVQVPSQEKAGAPPQHLVLYSASPSAVIA 145
Query: 91 RVRFAKFLTILSQEFDQQ---CVELVQGLLEHGRLTLKQMFD 129
R+R+ +++ ++ Q+ ++ V ++ +L GR+ + +
Sbjct: 146 RLRYPRYMNLVQQQLGRRRPVAVHVMAEVLRRGRVPWDDLIE 187
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
SY +D++ ++ E ++++++YG R+++ L +G ET ++++ +++++
Sbjct: 523 SYRVDWKNVLAKLTEELTHAILTEKYGVVGARVYQYLLTTGYKSETIRVAERCMIDREEC 582
Query: 414 PKILYKLWKDGYLLME---KLVVTGARQSQ-----FLLWKVNRQILWKHVLDEMFHAALN 465
+L++L + + + K V+ + Q F L+ ++ +++ + AALN
Sbjct: 583 QMLLHRLHSEHIIKISEVPKSVIAPSLNQQASIISFWLYYLDPPTTKMAMMELVARAALN 642
Query: 466 LSLRVSYELDR 476
+ +R +E+ R
Sbjct: 643 MRVRFRHEVAR 653
>gi|219121737|ref|XP_002181217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407203|gb|EEC47140.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 559
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 106/231 (45%), Gaps = 34/231 (14%)
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIE 364
K V +++SS +EE+ RN T+ VR ++G+ D Y I +++
Sbjct: 351 KKMGGVTMAVSSAWEEL---SVVRNPTV--VR----RVGD--------DRYEIACSQLVA 393
Query: 365 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 424
+ V +V R+G A R+ +L K G LE+D ++ + KD ++L++L++
Sbjct: 394 YLRKRTVHQIVHDRHGEVAARVVSILGKKG-WLESDNLASFAMIPAKDTREVLHQLYRSQ 452
Query: 425 YLLMEKLVVTGARQ----SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL 480
Y+ E + +RQ S LW V+ Q L + + + + + LR ++++ K+
Sbjct: 453 YV--ELFQLANSRQHNPASTIYLWLVHEQRLVQKAIANVASSLWYVRLRRQHQIEIGKDW 510
Query: 481 LNLPADKRTGPLQDRYNRIRKVRI--------LLESSQMKLDDAILLFHDF 523
+ ++ + + + KV L+ S ++LD+ +++ DF
Sbjct: 511 IE--RAQQADDTDENDHEMDKVSYEMFCLGLERLDCSTLQLDETLMVLQDF 559
>gi|408395935|gb|EKJ75106.1| hypothetical protein FPSE_04726 [Fusarium pseudograminearum CS3096]
Length = 634
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLIQHTSLTLRYLRNGLAVLIQQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE--HG 120
+ T D T Y D + +R K L ++ ++ EL Q L++ H
Sbjct: 64 LIYHHT----DTNNNVTNYQANADACYNLIRSGKILDVIETQYGTAERELTQTLIQLGHA 119
Query: 121 RLT-LKQMF 128
R+ L Q F
Sbjct: 120 RIADLSQAF 128
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DF++++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 456 WTVDFDRLVGKLRETELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQ 514
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
+ + G + ++++ +R + W +++ LD+++ A L +
Sbjct: 515 GKMLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCLQTLEV 574
Query: 473 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
E +E+ +L+ K T ++YN +V+ L M+LD+ + + D+
Sbjct: 575 ERHKERNILSFVERKDVQGKEEEVMTAEHYNKYNTHLEVQNKLLGQLMRLDELVSVLRDY 634
>gi|354544740|emb|CCE41465.1| hypothetical protein CPAR2_800170 [Candida parapsilosis]
Length = 596
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V + H G++ +K+ L+ +G T + + + T+L+ + VK+AL+ LIQ CV +
Sbjct: 22 VASTHLGEVASKIISVLIAQGRQTAKELSQRTQLTLKSVKSALVSLIQLGCVYFW----Q 77
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ---MFD 129
D K+ T Y + + + L ++QE+ ++ E+VQ ++E G + L++ FD
Sbjct: 78 DRDKS-THYSLNETGLKILINSGDILNHITQEYGEEEAEVVQNVMELGHIKLEEYLKQFD 136
Query: 130 RAK 132
+ K
Sbjct: 137 QDK 139
>gi|367034616|ref|XP_003666590.1| hypothetical protein MYCTH_2311408 [Myceliophthora thermophila ATCC
42464]
gi|347013863|gb|AEO61345.1| hypothetical protein MYCTH_2311408 [Myceliophthora thermophila ATCC
42464]
Length = 670
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 350 ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
D +++DF ++ + E++SV+ + GR R+ R+L G+L E + + +
Sbjct: 487 CGPDEWTVDFGPVMNSLREAELDSVIERTCGRQGLRLVRILRAKGKLDEK-ALPNVALMR 545
Query: 410 KKDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K + + + ++ G++ ++++ V + F LW + K +LD + ++
Sbjct: 546 KPELQQKMLEMQTAGFVSVQEVPRDVKADVKKSFFLWYCDIDRSLKRLLDTSYRTMVH-C 604
Query: 468 LRVSYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDA 516
L+V E R+KE L KRT G +D RY+R L + M++DD
Sbjct: 605 LQV-LEALRQKERDVLETTKRTDVRGRERDIMRKSYYERYSRFLDCERKLFAQVMRIDDL 663
Query: 517 ILLFHDF 523
+ + DF
Sbjct: 664 VSVLRDF 670
>gi|448090129|ref|XP_004196993.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|448094511|ref|XP_004198024.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|359378415|emb|CCE84674.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|359379446|emb|CCE83643.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
Length = 609
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 7/182 (3%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V H G++ A V L+ G LT +++ + +++ + VK L+ LIQ NC+ +
Sbjct: 24 VAKTHLGEVAAVVISILISYGRLTAKDISQRSKIQLKLVKLTLVSLIQLNCIYYW----H 79
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 132
D N Y IL + + + + +F ++ EL Q L+E G + ++ K
Sbjct: 80 DKTSNNVYYSFNERGILMLLHSGEIIVHIKNKFGEEAAELTQHLIEFGNIKIEDYLINFK 139
Query: 133 SSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE--EGPARKKGSKSAKKI 190
E + + + T L+ V+ P E L M + EE R AK+I
Sbjct: 140 DEESKYKRESIITTLFTQKWLIGVSKVDFNPI-EDLWMTVYEEVLRNTPRSTTMSEAKRI 198
Query: 191 GE 192
E
Sbjct: 199 AE 200
>gi|154331522|ref|XP_001561579.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058897|emb|CAM41465.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 329
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 352 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 411
SD Y++D +++ Q E VV RYG RI RLL + LE +++ +
Sbjct: 127 SDLYALDDVTAVQLLQEAVCERVVYSRYGVLGVRIMRLLLQH-HFLEERTLAEQSVATYV 185
Query: 412 DAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAALNL 466
A ++L++++KDG+LL +++ T A ++ LW ++ W L L
Sbjct: 186 KAREVLHRMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPAVRERLAK 241
Query: 467 SLRVSYELDREKE 479
+L +++ RE +
Sbjct: 242 TLTIAWVKLREAQ 254
>gi|294893388|ref|XP_002774447.1| hypothetical protein Pmar_PMAR006028 [Perkinsus marinus ATCC 50983]
gi|239879840|gb|EER06263.1| hypothetical protein Pmar_PMAR006028 [Perkinsus marinus ATCC 50983]
Length = 667
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 42/162 (25%)
Query: 10 AVH-----VITNHFGDLVAKVCECLLRKGPLTRQNVKRYT--ELS-------DEQV---- 51
AVH +IT+ FG V+ V CLL +GP+ + +Y ELS D +V
Sbjct: 26 AVHKLCCDIITDQFGPAVSAVASCLLSRGPMRFPELSKYVNEELSWPLDLRTDAKVPHSM 85
Query: 52 ------------KNALLVLIQQNCVQAFTTEQPDGPK-----ANTQYVVLF----DNILH 90
++AL++L+Q N + Q P A Q++VL+ ++
Sbjct: 86 HEITNRMTWSCIRDALMILLQNNIAVSHMVRQVQVPSQEKAGAPPQHLVLYSASPSAVIA 145
Query: 91 RVRFAKFLTILSQEFDQQ---CVELVQGLLEHGRLTLKQMFD 129
R+R+ +++ ++ Q+ ++ V ++ +L GR+ + +
Sbjct: 146 RLRYPRYMNLVQQQLGRRRPVAVHVMAEVLRRGRVPWDDLIE 187
>gi|160331229|ref|XP_001712322.1| hypothetical protein HAN_1g161 [Hemiselmis andersenii]
gi|159765769|gb|ABW97997.1| hypothetical protein HAN_1g161 [Hemiselmis andersenii]
Length = 454
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 39/219 (17%)
Query: 320 EVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRY 379
E++KS+ + + + V + F+ + I + EI +N+ E+++ ++
Sbjct: 257 EILKSQNFNEINITEIFDGGVM--DRCFLRIKNSRLKISVKFFFEIIRNKIFENLIGNQF 314
Query: 380 GRDAYRIFRLLSKSGRLLETD--KISDTTFVEKKDAPKILYKLWKDGYLLMEK----LVV 433
G++ RIF++L+K LE++ +IS +++E K K L+K++K G + E+
Sbjct: 315 GKNFLRIFKILAKD---LESEEKQISIQSWLEVKIIRKELFKMYKLGLVTFEEKNCSFFQ 371
Query: 434 TGARQSQFLLWKVNRQILWKHVLDEMFHAALN----------LSLRVSYEL-DREKELLN 482
+ ++S L+WK+N L K + E+ + N L++S+ D+ K L N
Sbjct: 372 STTKKS--LIWKINFLSLKKRFISEILKSIYNLLLKLENLQLFFLKISFFFKDQPKNLKN 429
Query: 483 LPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFH 521
+R G L +S ++LD+ +L+ +
Sbjct: 430 YFQHQRVG---------------LTTSILRLDEILLIIY 453
>gi|67592886|ref|XP_665677.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656471|gb|EAL35447.1| hypothetical protein Chro.40024 [Cryptosporidium hominis]
Length = 618
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-----------RQNVKRYTELSDEQV---KNALLVL 58
+I+ HFG L A + + LL GPL +++ K + S + +N+++ L
Sbjct: 11 IISTHFGGLPAMIIKKLLVNGPLPMDRLYHLVIKDKESSKYLSSNSKDNFLSFRNSMMYL 70
Query: 59 IQQNCVQAFTTEQP----DGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 112
+ C+ + P D K N + V D+++ R+RF ++ + + + C +
Sbjct: 71 VHHYCIIYYEISDPNIELDNSKEGKNVVFEVNIDHVISRLRFPLYMAHIEKLLGETCKYI 130
Query: 113 VQGLLEHGRLTLK 125
+++HGR++ K
Sbjct: 131 FMEVIKHGRISTK 143
>gi|330921180|ref|XP_003299319.1| hypothetical protein PTT_10280 [Pyrenophora teres f. teres 0-1]
gi|311327077|gb|EFQ92598.1| hypothetical protein PTT_10280 [Pyrenophora teres f. teres 0-1]
Length = 681
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G+L A+V L R G + ++ R + LS Q+K L++L+QQ+ + + P
Sbjct: 23 YGELAARVYSILARHGRQSLASIARASYLSGRQIKYGLVILLQQHLIFHSGSNAP----- 77
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 129
T Y + + N VRF K ++ F ++ ++ L+ G + + D
Sbjct: 78 LTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANIMSNLVALGHTRIADLKD 129
>gi|121717643|ref|XP_001276111.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus clavatus NRRL 1]
gi|206558078|sp|A1C4R7.1|RPC3_ASPCL RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|119404309|gb|EAW14685.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus clavatus NRRL 1]
Length = 635
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 456 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 514
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 515 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCFQRLR 574
Query: 472 YELDREKELL 481
+E +R KE L
Sbjct: 575 FERNRLKEFL 584
>gi|343429865|emb|CBQ73437.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 707
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 66/171 (38%), Gaps = 50/171 (29%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQ--------------------- 50
HV+ HFG + A+V LL++G LT + + R+ + +
Sbjct: 16 HVLLQHFGPIAARVGALLLKRGRLTIREIGRFLNQAPTRTNRGPTDPFSNNSATHSKSTL 75
Query: 51 ---------------------------VKNALLVLIQQNCVQAFTTEQPDGPKANTQYV- 82
++ +++LIQ C +T+ P+ N ++
Sbjct: 76 VSAPIAGASSSYDTNDPNAPVPVPRLLIEQTIMILIQHGCAWHSSTD-PEVADPNQEFFE 134
Query: 83 VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 133
+ + +L R+RF +++ I E +V+ +L+HG+L + R S
Sbjct: 135 ININEVLLRLRFGRYIGIAEDELGDTAARIVKLVLQHGKLQASDIIHRVAS 185
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 46/272 (16%)
Query: 253 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK-VKTKNSVP 311
+ +V R +F+ F LR + +D VR ++ AA V ++ A ++ KK V+ S P
Sbjct: 379 DPTVYLRVHFDRFDVHLRDETMVDAVREKYNNTAAQVFRHLIHAGDASTKKSVRDVRSAP 438
Query: 312 LSLSSIYEEV---IKSEAG---RNMTLDHVRASLVQLGEL-------------------- 345
+S++++ ++ + + G R+ D +ASL E
Sbjct: 439 ISITTLAHKLPSDLSLQKGFDRRSFGKD--KASLPSRQEFLAEYCAIFSHSEDVSGKSKT 496
Query: 346 -SFVDASSDS-------------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 391
+ +SDS +I++ + E + + + +VV +++G A RI +L
Sbjct: 497 SRLMAPASDSTTKTAGGSKVASSLTIEYSNVAERMRRDLLRNVVEEKFGTAAIRIMNILR 556
Query: 392 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 449
+ G+ LE IS V + + +L+ L ++++ T R F LW V+
Sbjct: 557 EKGK-LEEKHISKLALVSISETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEA 615
Query: 450 ILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+LD ++ + L R + E+ ++ LL
Sbjct: 616 KCRAWLLDHLYQSLARLGQRRNEEMRKQMPLL 647
>gi|358371561|dbj|GAA88168.1| DNA directed RNA polymerase III subunit Rpc82 [Aspergillus kawachii
IFO 4308]
Length = 628
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + ++ ++FG+L A++ L R L+ +K Y+ LSD Q+++ L +IQ
Sbjct: 1 MTSQYAAELCALLVEDNFGELFARIFSTLQRYDRLSLPRLKFYSRLSDRQLRHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
+ V +T+ DG T Y + VR K L + + + L++ ++ G
Sbjct: 61 HHLVYHYTSYD-DG---VTYYEPNLQAAYYLVRSGKILEFIEERLGKYAATLMETIMYLG 116
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 449 TWTVEFRHLARKLRHLELERMIEARYGDVALRVIRVLHAKGKLDEK-RLQEISLLPFKDL 507
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + +L++ + A R+
Sbjct: 508 RQVLASMQSGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRIRSSILEDTYKAMSRCMQRLR 567
Query: 472 YELDREKELL 481
+E +R KE L
Sbjct: 568 FERNRLKEFL 577
>gi|145242812|ref|XP_001393979.1| DNA-directed RNA polymerase III subunit RPC-3 [Aspergillus niger
CBS 513.88]
gi|206558114|sp|A2QUS7.1|RPC3_ASPNC RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|134078536|emb|CAK40457.1| unnamed protein product [Aspergillus niger]
gi|350640252|gb|EHA28605.1| hypothetical protein ASPNIDRAFT_50014 [Aspergillus niger ATCC 1015]
Length = 627
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 448 TWTVEFRHLARKLRHLELERMIEARYGDVALRVIRVLHAKGKLDEK-RLQEISLLPFKDL 506
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + +L++ + A R+
Sbjct: 507 RQVLASMQSGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRIRSSILEDTYKAMSRCMQRLR 566
Query: 472 YELDREKELL 481
+E +R KE L
Sbjct: 567 FERNRLKEFL 576
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + ++ ++FG+L A++ L R L+ +K Y+ LSD Q+++ L +IQ
Sbjct: 1 MTSQYAAELCALLVEDNFGELFARIFSTLQRYDRLSLPRLKFYSRLSDRQLRHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
+ V +T+ DG T Y + VR K L + + + L++ ++
Sbjct: 61 HHLVYHYTSYD-DG---VTYYEPNLQAAYYLVRSGKILEFIEERLGKYAATLMETIM 113
>gi|389593619|ref|XP_003722063.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438565|emb|CBZ12325.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 604
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 387 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLL 440
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 445
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 441 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 499
Query: 446 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
++ W L + L +L +++ RE +
Sbjct: 500 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 529
>gi|425774118|gb|EKV12435.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Penicillium digitatum PHI26]
gi|425778571|gb|EKV16695.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Penicillium digitatum Pd1]
Length = 641
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+++ + + +I ++FG+L A++ L R LT +K Y LSD Q+ + L +IQ
Sbjct: 1 MMSQCCAELCMLLIEDNFGELFARIFTVLQRYERLTLPRLKFYARLSDRQLHHGLCAMIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
+ + FT+ DG NT Y VR K L ++ + ++++ ++ G
Sbjct: 61 HHLIYHFTSLD-DG---NTYYEANPQAAYSLVRSGKILQLVESRLGEYAAQVLEAIMMLG 116
Query: 121 RLTLKQM 127
++ +
Sbjct: 117 HSSIAHL 123
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 322 IKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGR 381
I S+ N+T HV + L ++ + F + ++ E+E ++ RYG
Sbjct: 443 ILSQPPLNLTTKHVISGL-------------PTWRVAFRGLSRKLRHLELERMIESRYGD 489
Query: 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ- 440
A R+ R+L G+L E ++ + + + KD + L + G++ ++++ RQ
Sbjct: 490 VALRVVRVLHSKGKLDEK-RLQEISLLPFKDLRQTLASMQTGGFVDLQEVPRDAQRQPSK 548
Query: 441 -FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
LW + + +L++ + A R+ +E RE++ L
Sbjct: 549 TIYLWYYDPDRVCSSILEDTYKAMSRCLQRIKFERSRERDFL 590
>gi|169776609|ref|XP_001822771.1| DNA-directed RNA polymerase III subunit RPC-3 [Aspergillus oryzae
RIB40]
gi|238503327|ref|XP_002382897.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus flavus NRRL3357]
gi|121800841|sp|Q2U9X7.1|RPC3_ASPOR RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|83771506|dbj|BAE61638.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220691707|gb|EED48055.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus flavus NRRL3357]
Length = 653
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 474 TWTVEFRHLARKLRHLELERIIEARYGDVALRVVRVLHDKGKLDEK-RLQEISLLPFKDL 532
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL++ + A R+
Sbjct: 533 RQVLASMQTGGFVDLQEVPRDALRQPSKTIFLWFYDPDRVGNSVLEDTYKAMSRCLQRLR 592
Query: 472 YELDREKELL 481
+E R KE L
Sbjct: 593 FERSRLKEFL 602
>gi|345560340|gb|EGX43465.1| hypothetical protein AOL_s00215g201 [Arthrobotrys oligospora ATCC
24927]
Length = 627
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G+L ++V LL G T + R ++ + VK L+VLIQQ+ V +T E
Sbjct: 12 LVRDTYGELSSRVVAALLEYGRSTLYTIVRRVKIPERVVKQTLVVLIQQHLVLHYTNE-- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--LLEHGRLT 123
DG + T Y + I + + + + + F + ++ LL H R++
Sbjct: 70 DGGRDATHYECNWLQIYELLHSGRMVRTIEERFGSEAASVISNFLLLGHARVS 122
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++D +K+ E + E+E +V +R+G A R+ R++ G++ E ++DT + +KD
Sbjct: 448 GWTVDTQKLCEALRIRELEQIVEERFGGIATRLVRIIKDKGKMDEKG-LADTALLRQKDI 506
Query: 414 PKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
L L + G+L ++++ T R F + + ++ +L++ + A + R+
Sbjct: 507 RAHLGVLHERGFLHIQEVPKTAERLPARTFYFFYFDEKMSKMAMLNDFYKAMSRILQRID 566
Query: 472 YE 473
+E
Sbjct: 567 HE 568
>gi|429857629|gb|ELA32486.1| RNA polymerase iii subunit rpc82 [Colletotrichum gloeosporioides
Nara gc5]
Length = 653
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T++G + H++ + G+L A++ L KG + + T L+ Q+++ L VL+Q
Sbjct: 2 LVTKHGAELCAHLVNDICGELPARILAVLFSKGRSNIATLVQSTGLNPRQLRHGLAVLVQ 61
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE-- 118
Q+ V Q D Y D + R K + ++ E+ E+VQ +++
Sbjct: 62 QSLV----YHQSDSSNTTGVYEANPDGCYNLCRTGKIIEMVGIEYGPAEQEVVQTIMQLG 117
Query: 119 HGRLT-LKQMFD 129
H R++ L Q F+
Sbjct: 118 HARVSDLAQAFE 129
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DF+ ++E + EV++V+ + +GR R+ R+L G+L E + ++K+D
Sbjct: 475 WTVDFKPLMEGLKQTEVDAVIEQSFGRHGLRLTRILRDKGKLDEK-MLPSLALMKKQDVQ 533
Query: 415 KILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
+ + G++ ++++ +R + W + + + ++D+ + L +
Sbjct: 534 GKMLAMQMAGFVDVQEVPKDASRTATRTMFFWFFDIERIESQLVDDYYKTMLRCLQNLEV 593
Query: 473 ELDREKELLNLPADKR----------TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHD 522
RE+ +L+ ++R T ++Y+ ++ L M+LDD + +F D
Sbjct: 594 HRYRERNILSF-VERRDVKGKEEEVMTAEHYNKYSTFLDLQSKLLGHVMRLDDLVSVFRD 652
Query: 523 F 523
+
Sbjct: 653 Y 653
>gi|391874457|gb|EIT83339.1| RNA polymerase III (C) subunit [Aspergillus oryzae 3.042]
Length = 653
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 474 TWTVEFRHLARKLRHLELERIIEARYGDVALRVVRVLHDKGKLDEK-RLQEISLLPFKDL 532
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL++ + A R+
Sbjct: 533 RQVLASMQTGGFVDLQEVPRDALRQPSKTIFLWFYDPDRVGNSVLEDTYKAMSRCLQRLR 592
Query: 472 YELDREKELL 481
+E R KE L
Sbjct: 593 FERSRLKEFL 602
>gi|389592804|ref|XP_003721673.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438205|emb|CBZ11958.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 377
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
T+ RA LV+ + S+ Y++D + + Q E VV RYG RI +LL
Sbjct: 95 TMPSTRALLVK------PHSQSNFYAVDHVTAVHLLQEAVCERVVHSRYGVLGVRIMKLL 148
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 445
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 149 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 207
Query: 446 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
++ W L + L +L +++ RE +
Sbjct: 208 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 237
>gi|367017192|ref|XP_003683094.1| hypothetical protein TDEL_0H00240 [Torulaspora delbrueckii]
gi|359750758|emb|CCE93883.1| hypothetical protein TDEL_0H00240 [Torulaspora delbrueckii]
Length = 632
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVK-RYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGP 75
H G+ + + + LL KG L+ ++ R +L ++ L+ LIQ CV+ + P G
Sbjct: 48 HLGERASSIIDVLLSKGRLSVFEIQERLPDLDTRSIRTTLVSLIQLRCVKYWEETTPTG- 106
Query: 76 KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ--CVELVQGLLEHGRLTLKQMFDRAKS 133
+ T Y D +L + + +SQ+F Q +++Q +L G +T + K
Sbjct: 107 RTITYYYANEDGLLLFLYSGLIIDEVSQQFQQSKLAAQIMQNILTLGSVTTEDFLQNCKD 166
Query: 134 SEKE 137
S+ E
Sbjct: 167 SKNE 170
>gi|344304130|gb|EGW34379.1| DNA-directed RNA polymerase III subunit RPC3 [Spathaspora
passalidarum NRRL Y-27907]
Length = 602
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPK 76
H G++ + + CL+ G LT + + + T++ + +K+AL+ L+Q NCV +T++ D K
Sbjct: 26 HLGEVASCIISCLISNGRLTSKELSQRTKIPLKSIKSALVSLVQLNCVYYWTSK--DSAK 83
Query: 77 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
Y + +L + + + + + E++Q +L +G +
Sbjct: 84 T-VHYSLNESGLLAFIHSGDIIQHIKERYGDDAAEIIQNVLINGHV 128
>gi|344233379|gb|EGV65251.1| hypothetical protein CANTEDRAFT_102848 [Candida tenuis ATCC 10573]
Length = 590
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V NH G + A V L+ G LT +++ + T+ + VK +L+ LIQ NCV +
Sbjct: 22 VTKNHLGSVAAVVVSTLISHGRLTAKDISKKTKFPLKTVKTSLVSLIQLNCVLYWQ---- 77
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 131
+G + + Y +L + + + + + +D + ++Q L++ G + ++ + A
Sbjct: 78 EGERVD--YTFHEQGLLVLLHSGQIINHIRETYDHESAAIIQNLIQIGSIRVEDLVKDA 134
>gi|154319039|ref|XP_001558837.1| hypothetical protein BC1G_02471 [Botryotinia fuckeliana B05.10]
gi|206558269|sp|A6RPU8.1|RPC3_BOTFB RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
Length = 637
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DFE++I+ + E++S++ + +G+ +R+ R++ K G+ LE I+ ++++D+
Sbjct: 459 WTVDFERVIDRLRESELDSIIYENFGQIGHRLVRVMRKMGK-LEEKHIAKLALIKQQDSR 517
Query: 415 KILYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
L + G + ++++ R LW + + +LD + A R+
Sbjct: 518 TTLVNMQMHGMVDIQEVPRDTGRMIVRTIHLWFCDEDRVTSLLLDRTYKAMSRCLQRLDV 577
Query: 473 ELDREKELLNLPADKRTGPLQDRY------NRIRKVRILLES--SQM-KLDDAILLFHDF 523
E R+ ++ L ++ + N++R++R E Q+ +LD+ + +F D+
Sbjct: 578 EKRRKANIIALSERTDVQGQEEAFLRPEQMNQLREIRAKEEDLLGQICRLDELVGIFQDY 637
>gi|341039022|gb|EGS24014.1| hypothetical protein CTHT_0007250 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 662
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 353 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 412
+ +++DFE +++ + E++SV+ + GR R+ R+L G+L E + + + K +
Sbjct: 482 NEWTVDFEPVMKALREAELDSVIERTSGRQGLRLVRILRAKGKLDEK-ALPNVALMRKSE 540
Query: 413 APKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 470
+ + ++ G++ ++++ V + F LW + + +L+ + L+ L+V
Sbjct: 541 LQQKMLEMQTAGFVHVQEVPRDVKADVKKSFFLWYCDVEKSLSRLLETSYVTMLH-CLQV 599
Query: 471 SYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILL 519
L R KE L KRT G +D RY R L + M+LDD + +
Sbjct: 600 LEAL-RRKEKDVLQTTKRTDVRGREKDAMRKEYYERYARFLACERKLFAQVMRLDDLVSV 658
Query: 520 FHDF 523
DF
Sbjct: 659 LRDF 662
>gi|255931675|ref|XP_002557394.1| Pc12g05490 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582013|emb|CAP80176.1| Pc12g05490 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 641
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 322 IKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGR 381
I S+ N+T HV + L ++ + F + ++ E+E ++ RYG
Sbjct: 443 ILSQPPLNLTTKHVISGL-------------PTWRVAFRGLARKLRHLELERMIESRYGD 489
Query: 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ- 440
A R+ R+L G+L E ++ + + + KD + L + G++ ++++ RQ
Sbjct: 490 VALRVVRVLHAKGKLDEK-RLQEISLLPFKDLRQTLASMQTGGFVDLQEVPRDAQRQPSK 548
Query: 441 -FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
LW + + +L++ + A R+ +E RE++ L
Sbjct: 549 TIYLWYYDPDRVCSSILEDTYKAMSRCLQRIKFERSRERDFL 590
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+++ + + +I ++FG+L A++ L R LT +K Y L+D Q+ + L +IQ
Sbjct: 1 MMSQCSAELCMLLIEDNFGELFARIFTVLQRYERLTLPRLKFYARLTDRQLHHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
+ + FT+ DG NT Y VR K L ++ + ++++ ++ G
Sbjct: 61 HHLIYHFTSLD-DG---NTYYEANPQAAYSLVRSGKILQLVENRLGEYAAQVLEAIMMLG 116
Query: 121 RLTLKQM 127
++ +
Sbjct: 117 HSSIAHL 123
>gi|146075711|ref|XP_001462768.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134066847|emb|CAM65309.1| conserved hypothetical protein, partial [Leishmania infantum JPCM5]
Length = 328
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 111 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLL 164
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 445
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 165 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 223
Query: 446 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
++ W L + L +L +++ RE +
Sbjct: 224 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 253
>gi|313230088|emb|CBY07792.1| unnamed protein product [Oikopleura dioica]
Length = 281
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
Y++ K++E + V +S +YG DA +I LL + G E ++ T +++KDA
Sbjct: 66 YTVLLFKMVEKMVQQCVLQWISTKYGMDARKIMALLFE-GNYFEPKNVAKTCVMDEKDAN 124
Query: 415 KILYKLWKDGYLLMEKLVVTG 435
++LY+L DG + + + G
Sbjct: 125 QVLYRLMNDGLVSFQDMTPAG 145
>gi|58267762|ref|XP_571037.1| hypothetical protein CNE05090 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227271|gb|AAW43730.1| hypothetical protein CNE05090 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 455
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 121/279 (43%), Gaps = 37/279 (13%)
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
KR+ ++E +Q V R N++ + +R+ + + GA V+ A+L A
Sbjct: 116 KRRKGGKAIEESDYVLKQDVHLRVNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDA 175
Query: 297 T---SSAEKKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASLVQL- 342
+ +S K +T + P+ ++SI + S A ++ D VR L L
Sbjct: 176 SLRDTSLLKDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRTYLSILA 233
Query: 343 GE-----------LSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 391
GE L +++ Y ++FE I + + +V ++ G A R+ +++
Sbjct: 234 GEDQLTGTGAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLGDKAARVLAVVT 293
Query: 392 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFL 442
+S + ET I D + KDA IL +L K + +++ T A+ +++
Sbjct: 294 RSSKAFET-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYH 352
Query: 443 LWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
LW V+ + +L ++ N+ R E+D++K +L
Sbjct: 353 LWAVDLSRCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 391
>gi|171690080|ref|XP_001909972.1| hypothetical protein [Podospora anserina S mat+]
gi|170944995|emb|CAP71106.1| unnamed protein product [Podospora anserina S mat+]
Length = 644
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 351 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 410
++ +++DF ++ + E+++ + GR+ R+ R+L G+L E I + K
Sbjct: 462 GAEEWTVDFVPLMAALRQAEIDATIENTVGREGVRLVRMLRAKGKLDEK-AIMSVALMRK 520
Query: 411 KDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSL 468
D K L ++ K G++ +++ + F LW + + + +LD + ++ SL
Sbjct: 521 ADMSKKLAEMHKYGFVQTQEVPREAKADVKKSFFLWYFDGTMALERILDVSYKTMIH-SL 579
Query: 469 RVSYELDREKELLNLPADKRTGPLQDRYNRIRKV------------RILLESSQMKLDDA 516
+V L REK+ L KR+ +++RK+ R+LL Q ++DD
Sbjct: 580 QVLDTL-REKDQHVLSLIKRSDVKGQEDDKLRKIHKEKLTQFLKLERMLLGQIQ-RVDDL 637
Query: 517 ILLFHDF 523
+ + D+
Sbjct: 638 VAVLRDY 644
>gi|146075658|ref|XP_001462755.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134066834|emb|CAM65296.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 192
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 48 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLL 101
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 445
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 102 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 160
Query: 446 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
++ W L + L +L +++ RE +
Sbjct: 161 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 190
>gi|398009521|ref|XP_003857960.1| hypothetical protein, conserved [Leishmania donovani]
gi|322496163|emb|CBZ31235.1| hypothetical protein, conserved [Leishmania donovani]
Length = 192
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 48 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLL 101
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 445
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 102 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 160
Query: 446 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
++ W L + L +L +++ RE +
Sbjct: 161 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 190
>gi|451995146|gb|EMD87615.1| hypothetical protein COCHEDRAFT_1184836 [Cochliobolus
heterostrophus C5]
Length = 679
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G+L ++V L R G + ++ R + L+ Q+K L++L+QQ+ + ++ P
Sbjct: 23 YGELASRVYSVLARHGRQSLASIARASYLNARQIKYGLVILLQQHLIFHSGSDAP----- 77
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 78 LTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
>gi|336468974|gb|EGO57137.1| hypothetical protein NEUTE1DRAFT_130844 [Neurospora tetrasperma
FGSC 2508]
gi|350288719|gb|EGZ69944.1| RNA polymerase III subunit C3 [Neurospora tetrasperma FGSC 2509]
Length = 624
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 141/356 (39%), Gaps = 60/356 (16%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G L A+V L ++G L+ + + ++++LS QVKN L VL Q N + F + D
Sbjct: 19 YGQLPARVYATLFQRGKLSVRLISQFSKLSARQVKNGLCVLQQHNLL--FYS--VDANSG 74
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF--------- 128
+Y V + + VR K L ++ + +++Q LL G+ + +
Sbjct: 75 EAEYSVNHEYAYNLVRTGKILEMVDNSYGPAGRDVMQNLLLLGQTRISDLVAAYQAKINE 134
Query: 129 ---DRAKSSEKEGNLV--DLDSLRETLVKLV--------------TAHYVERCPASEPLL 169
D A ++K+ LV L L +L+ +AH +E+ E
Sbjct: 135 VNNDDAWLNDKKPELVIKSKAQLNSVLCRLIEAELIDVIHSKTFQSAHEIEKQVHRE--- 191
Query: 170 MPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK-- 227
+ + P KG+K+ + EQ+V E + ++ + + G ++
Sbjct: 192 --VMDVYFPNGIKGTKAKVE------FEQRVAEGLRKVREESKTLKRKLAQNGGASKRRK 243
Query: 228 ----NSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLD 283
N N P E+ D D + V+ R N+E I LR + + +V L
Sbjct: 244 LAVGNETNGAPEEEEDLD-------PALDPRQVI-RINYEKCIVELRSRRLVQYVNETLG 295
Query: 284 DGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASL 339
+ V +L+ + K + S PL + EE + N LD V+ S+
Sbjct: 296 ETTGYVYGQLLKQLT---KNISRCRSDPLMDTLTPEEKVTPSVTTNEILDKVKTSI 348
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 339 LVQLGELSFV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 397
L+ G FV D +++DF+ ++E + E++S++ + GR R+ R+L G+L
Sbjct: 429 LLAEGHPGFVRHCGEDEWTVDFKPLMENLRATELDSIIEQTSGRQGLRLIRILRTKGKLG 488
Query: 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHV 455
E + + + K D + + ++ G+ +++ + LW + + + +
Sbjct: 489 E-QALQSLSLMRKVDLQQKMLEMRLVGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSSL 547
Query: 456 LDEMFHAALNLSLRVSYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRI 504
+ + + ++ + ++K++L+L KRT G +D R+ + K
Sbjct: 548 IAKCYATMVHCLQVLEVRRQKDKDVLSLA--KRTNVKGKEKDMMRDESYARFAKFLKDER 605
Query: 505 LLESSQMKLDDAILLFHDF 523
LL + M++DD + L DF
Sbjct: 606 LLMAEMMRIDDTLALLQDF 624
>gi|448507857|ref|XP_003865864.1| Rpc82 protein [Candida orthopsilosis Co 90-125]
gi|380350202|emb|CCG20422.1| Rpc82 protein [Candida orthopsilosis Co 90-125]
Length = 629
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V H G++ +K+ L+ G T + + + T+L+ + +K+AL+ LIQ +CV F E+
Sbjct: 60 VALTHLGEVASKIISTLIAHGRQTAKELSQRTQLTLKSIKSALVSLIQLSCVN-FWQEK- 117
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ---MFD 129
+T Y + V L ++QE+ ++ E VQ ++E G + L++ FD
Sbjct: 118 ---DKSTYYSFNETGLKILVNSGDILNHITQEYGEEEAEAVQNVMELGHIKLEEYLKQFD 174
Query: 130 RAK 132
+ K
Sbjct: 175 QDK 177
>gi|68480567|ref|XP_715778.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
gi|46437417|gb|EAK96764.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
Length = 595
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPIKNIKSALVSLIQLNCIYYWQEEK--- 80
Query: 75 PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-----D 129
Y + +L V + + +++ + E++Q +L HG + ++ D
Sbjct: 81 -DRKFYYSLKETGLLLFVYSGDIINHIKRQYGEDGAEIIQNILIHGHVKIEDYLTQFNHD 139
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHY 158
++ ++E + L + L+KL H+
Sbjct: 140 KSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
>gi|353526281|sp|Q5ATV8.2|RPC3_EMENI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|259481063|tpe|CBF74254.1| TPA: DNA-directed RNA polymerase III subunit rpc3 (RNA polymerase
III subunit C3) [Source:UniProtKB/Swiss-Prot;Acc:Q5ATV8]
[Aspergillus nidulans FGSC A4]
Length = 623
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 84/181 (46%), Gaps = 12/181 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E +V RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 444 NWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-RLQEISLLPFKDL 502
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + +L + + A R+
Sbjct: 503 RQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDTYKAMSRCLQRLK 562
Query: 472 YELDREKELL------NLPADKRTGPLQDRYNRIRKVR---ILLESSQMKLDDAILLFHD 522
+E R K+ L ++ ++ + +R+R+ R LL +LDD I + D
Sbjct: 563 FERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEVARLDDMIAVMRD 622
Query: 523 F 523
+
Sbjct: 623 Y 623
>gi|451845886|gb|EMD59197.1| hypothetical protein COCSADRAFT_127652 [Cochliobolus sativus
ND90Pr]
Length = 679
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G+L ++V L R G + ++ R + L+ Q+K L++L+QQ+ + + P
Sbjct: 23 YGELASRVYSVLARHGRQSLASIARASYLNARQIKYGLVILLQQHLIFHSGNDAP----- 77
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 78 LTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
>gi|67902570|ref|XP_681541.1| hypothetical protein AN8272.2 [Aspergillus nidulans FGSC A4]
gi|40739820|gb|EAA59010.1| hypothetical protein AN8272.2 [Aspergillus nidulans FGSC A4]
Length = 566
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 84/181 (46%), Gaps = 12/181 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E +V RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 387 NWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-RLQEISLLPFKDL 445
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + +L + + A R+
Sbjct: 446 RQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDTYKAMSRCLQRLK 505
Query: 472 YELDREKELL------NLPADKRTGPLQDRYNRIRKVR---ILLESSQMKLDDAILLFHD 522
+E R K+ L ++ ++ + +R+R+ R LL +LDD I + D
Sbjct: 506 FERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEVARLDDMIAVMRD 565
Query: 523 F 523
+
Sbjct: 566 Y 566
>gi|68480462|ref|XP_715829.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
gi|74590267|sp|Q5A246.1|RPC3_CANAL RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|46437470|gb|EAK96816.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
Length = 595
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPTKNIKSALVSLIQLNCIYYWQEEK--- 80
Query: 75 PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-----D 129
Y + +L V + + +++ + E++Q +L HG + ++ D
Sbjct: 81 -DRKFYYSLKETGLLLFVYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQFNHD 139
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHY 158
++ ++E + L + L+KL H+
Sbjct: 140 KSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
>gi|452986792|gb|EME86548.1| hypothetical protein MYCFIDRAFT_43158, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 602
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I G L +++ L G LTR +++ T + Q+++AL VLIQQ+ + TTE+
Sbjct: 13 LIEESCGHLSSQIFLALADNGRLTRWQLQQTTRIPARQLRHALAVLIQQHLLLHNTTEE- 71
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE--HGRLT-LKQMFD 129
T Y V + N + +R +++ + + ++V L++ H R+ L Q FD
Sbjct: 72 ----GLTFYHVDWRNAYYTLRSNSIISLTRDRYGESAAKIVTSLIQLGHARVGDLAQAFD 127
Query: 130 RAKSSEKE 137
+++++
Sbjct: 128 FTSTTKRD 135
>gi|66356884|ref|XP_625620.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226721|gb|EAK87700.1| hypothetical protein cgd4_110 [Cryptosporidium parvum Iowa II]
Length = 618
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-----------RQNVKRYTELSDEQV---KNALLVL 58
+I+ HFG L A + + L+ GPL +++ K + S +N+++ L
Sbjct: 11 IISTHFGGLPAIIIKKLVVNGPLPMDRLYHLVIKDKESSKYLSSNSKNNFLSFRNSMMYL 70
Query: 59 IQQNCVQAFTTEQP----DGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 112
+ C+ + P D K N + V D+++ R+RF ++ + + + C +
Sbjct: 71 VHHYCIIYYEISDPNIELDNSKEGKNVVFEVNIDHVISRLRFPLYMAHIEKLLGETCKYI 130
Query: 113 VQGLLEHGRLTLK 125
+++HGR++ K
Sbjct: 131 FMEVIKHGRISTK 143
>gi|119498711|ref|XP_001266113.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Neosartorya fischeri NRRL 181]
gi|206558087|sp|A1CZP6.1|RPC3_NEOFI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|119414277|gb|EAW24216.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Neosartorya fischeri NRRL 181]
Length = 655
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 476 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 534
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 535 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCLQRLR 594
Query: 472 YELDREKELL 481
+E R K+ L
Sbjct: 595 FERSRIKDFL 604
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQQ+ V +T+
Sbjct: 32 LVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQQHLVYHYTSYD- 90
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
DG T Y + + VR K L + + + ++ ++ G
Sbjct: 91 DGV---TYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLSTIMNLG 135
>gi|336275208|ref|XP_003352357.1| hypothetical protein SMAC_07798 [Sordaria macrospora k-hell]
gi|380088461|emb|CCC13616.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 625
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 353 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 412
D +++DF+ ++E + E++S++ + GR R+ R+L G+L E + + + K D
Sbjct: 445 DEWTVDFKPLMENLRATELDSIIEQTCGRQGLRLTRILRTKGKLGE-QALQSLSLMRKVD 503
Query: 413 APKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 470
+ + ++ G+ +++ + LW + + + ++ + + A + L+V
Sbjct: 504 LQQKMLEMRLAGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSGLIAKCY-ATMVHCLQV 562
Query: 471 SYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILL 519
E+ R+KE L KRT G +D R+ + K LL + M++DD + L
Sbjct: 563 -LEVRRQKEKAVLSLAKRTNVKGKEKDMMRDESYARFAKFLKDEKLLMAEVMRIDDTLAL 621
Query: 520 FHDF 523
DF
Sbjct: 622 LQDF 625
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G L A+V L ++G L+ + + ++++L+ QVKN L VL Q N + F T D
Sbjct: 19 YGQLPARVYATLFQRGKLSIRLITQFSKLNARQVKNGLCVLQQHNLL--FYT--VDANSG 74
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+Y V ++ + VR K L ++ + +++Q LL G+
Sbjct: 75 EAEYSVNHESAYNLVRAGKILEMVDNSYGPAGRDVMQNLLLLGQ 118
>gi|241958266|ref|XP_002421852.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223645197|emb|CAX39796.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 610
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E +G
Sbjct: 24 TTHLGEIASCIISILISNGRLTAKEISNRTKIPFKNIKSALVSLIQLNCI-YYWQEDKNG 82
Query: 75 PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK-------QM 127
Y + +L V + + +++ + E++Q +L HG + ++ Q
Sbjct: 83 K---FYYSLKETGLLLFVYSGDIINHIKRQYGDEEAEIIQNILIHGHVKIEDYLNQFNQQ 139
Query: 128 FDRAKSSEKEGN 139
D++KS+ + N
Sbjct: 140 DDKSKSNSMKIN 151
>gi|303319265|ref|XP_003069632.1| RNA polymerase III subunit RPC82 family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240109318|gb|EER27487.1| RNA polymerase III subunit RPC82 family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 653
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L A + LL G PL R + + T LS QVK+ L VL+
Sbjct: 1 MSQYAAELCKLLITDNFGELYALIFIYLLNHGRQPLPR--IVQNTHLSPRQVKHGLAVLV 58
Query: 60 QQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 119
QQ+ V T DG T Y + + + VR K + ++ + +V LL
Sbjct: 59 QQHLV-FHCTSLDDGI---TYYESNWRSAYNLVRSGKIIQLVEERLGNHAASIVSTLLAL 114
Query: 120 G 120
G
Sbjct: 115 G 115
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
++++++ + + ++ E+E ++ R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 474 TWAVEYRHLAKKLRHLELERLIEARFGGFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 532
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 533 RQILGQMASAGFVELQEVPRDAQRQPSRTMYLWFYDPDRVRFMVIEDTYKSMSRCLQRIR 592
Query: 472 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 522
E ++ K LL +DRY R LL +LD+ + + D
Sbjct: 593 VEREKLKFLLEKTERSDVKGNEDRYLSAAELQTLKEWRDTEKLLLGEVARLDELVAVLRD 652
Query: 523 F 523
+
Sbjct: 653 Y 653
>gi|46107524|ref|XP_380821.1| hypothetical protein FG00645.1 [Gibberella zeae PH-1]
Length = 635
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DF++++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 457 WTVDFDRLVGKLRETELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQ 515
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
+ + G + ++++ +R + W +++ LD+++ A L +
Sbjct: 516 GKMLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCLQTLEV 575
Query: 473 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523
E +E+ +L+ K T ++YN +V+ L M+LD+ + + D+
Sbjct: 576 ERHKERNILSFVERKDVQGKEEEVMTAEHYNKYNTHLEVQNKLLGQLMRLDELVSVLRDY 635
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLIQHTSLTLRYLRNGLAVLIQQN 63
Query: 63 CVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE--HG 120
+ T T Y D + +R K L ++ ++ EL Q L++ H
Sbjct: 64 LIYHHTDTN---NNNVTNYQANADACYNLIRSGKILDVIETQYGTAERELTQTLIQLGHA 120
Query: 121 RLT-LKQMF 128
R+ L Q F
Sbjct: 121 RIADLSQAF 129
>gi|159126152|gb|EDP51268.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus fumigatus A1163]
Length = 626
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 447 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 505
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 506 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCLQRLR 565
Query: 472 YELDREKELL 481
+E R K+ L
Sbjct: 566 FERSRIKDFL 575
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +++ + ++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQ
Sbjct: 1 MTSQFAAELCELLVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQ 60
Query: 61 QNCVQAFTTEQPDGP---KANTQ---YVVLFDNILHRV--RFAKF-LTILS 102
Q+ V +T+ DG +AN Q Y+V IL V R K+ T+LS
Sbjct: 61 QHLVYHYTSYD-DGVTYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLS 110
>gi|70984834|ref|XP_747923.1| DNA directed RNA polymerase III subunit Rpc82 [Aspergillus
fumigatus Af293]
gi|74668051|sp|Q4WEU2.1|RPC3_ASPFU RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|66845551|gb|EAL85885.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus fumigatus Af293]
Length = 629
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 450 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 508
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 509 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCLQRLR 568
Query: 472 YELDREKELL 481
+E R K+ L
Sbjct: 569 FERSRIKDFL 578
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +++ + ++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQ
Sbjct: 1 MTSQFAAELCELLVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQ 60
Query: 61 QNCVQAFTTEQPDGP---KANTQ---YVVLFDNILHRV--RFAKF-LTILS 102
Q+ V +T+ DG +AN Q Y+V IL V R K+ T+LS
Sbjct: 61 QHLVYHYTSYD-DGVTYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLS 110
>gi|154277094|ref|XP_001539392.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|206558266|sp|A6R9K6.1|RPC3_AJECN RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|150414465|gb|EDN09830.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 649
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 24/151 (15%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + +IT++FG+L A PL R + + T LS QV++ L VLIQQ
Sbjct: 1 MSQYAAELCKLLITDNFGELYA----------PLPR--IVQNTRLSPRQVRHGLAVLIQQ 48
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ +T+ DG Y + + VR + L ++ ++ + +++ +L HG
Sbjct: 49 RLIYHYTSLD-DGI---AYYEASWMTAYNLVRSGRILQLVEEKLGKYVAKVLSTILYHGH 104
Query: 122 L------TLKQMFDRAKSSEKEGNLVDLDSL 146
+ TL ++ R + S K G LV + L
Sbjct: 105 VRISYLETLPEL--RPQVSSKAGKLVAANGL 133
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 470 TWAVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 528
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 529 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDLDRVARMVLEDTYKCMSRCLQRIG 588
Query: 472 YELDREKELL 481
E ++ K L
Sbjct: 589 VERNKLKLFL 598
>gi|307202972|gb|EFN82188.1| DNA-directed RNA polymerase III subunit RPC3 [Harpegnathos
saltator]
Length = 260
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 349 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 408
D+S YS++ + ++++V++++G A RIFRL+ ++ +E +++ +
Sbjct: 57 DSSGGQYSVNMKNAFNQLAWATLDNIVTEKFGSKAARIFRLI-RNKTTIELEQLQQVAMM 115
Query: 409 EKKDAPKILYKLWKDGYLL---MEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALN 465
+ A + Y L ++GY+ M++ V+ F ++ ++ + + + +HA N
Sbjct: 116 PTRQAKLLTYTLAQEGYIQVQEMKRSGVSAGPMKTFFMFYIDLNQVVQMQIGHCYHALHN 175
Query: 466 LSLRVSYELDREKELLN 482
+ R +E K +++
Sbjct: 176 IIQRRDHESTSNKRMID 192
>gi|238879751|gb|EEQ43389.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 590
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 19 TTHLGEIASCIISILISNGRLTAREISNRTKIPIKNIKSALVSLIQLNCIYYWQEEK--- 75
Query: 75 PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-----D 129
Y + +L V + + +++ + E++Q +L HG + ++ D
Sbjct: 76 -DRKFYYSLKETGLLLFVYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQFNHD 134
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHY 158
++ ++E + L + L+KL H+
Sbjct: 135 KSMKIDQENKFLKLFN-DNWLIKLQDYHF 162
>gi|119182545|ref|XP_001242401.1| hypothetical protein CIMG_06297 [Coccidioides immitis RS]
gi|121754656|sp|Q1DTR6.1|RPC3_COCIM RecName: Full=DNA-directed RNA polymerase III subunit RPC-3;
Short=RNA polymerase III subunit C3
gi|392865296|gb|EAS31079.2| DNA-directed RNA polymerase III subunit RPC-3 [Coccidioides immitis
RS]
Length = 653
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L A + LL G PL R + + T LS QV++ L VL+
Sbjct: 1 MSQYAAELCKLLITDNFGELYALIFIYLLNHGRQPLPR--IVQNTHLSPRQVRHGLAVLV 58
Query: 60 QQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 119
QQ+ V T DG T Y + + + VR K + ++ + + +V LL
Sbjct: 59 QQHLV-FHCTSLDDGI---TYYESNWRSAYNLVRSGKIIQLVEERLGNRAASIVSTLLAL 114
Query: 120 G 120
G
Sbjct: 115 G 115
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
++++++ + + ++ E+E ++ R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 474 TWAVEYRHLAKKLRHLELERLIEARFGGFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 532
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 533 RQILGQMASAGFVELQEVPRDAQRQPSRTMYLWFYDPDRVRFMVIEDTYKSMSRCLQRIR 592
Query: 472 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 522
E ++ K LL +DRY R LL +LD+ + + D
Sbjct: 593 VEREKLKFLLEKTERSDVKGNEDRYLSAAELQTLKEWRDTEKLLLGEVARLDELVAVLRD 652
Query: 523 F 523
+
Sbjct: 653 Y 653
>gi|149246041|ref|XP_001527490.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|206558157|sp|A5DRM4.1|RPC3_LODEL RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|146447444|gb|EDK41832.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 610
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPK 76
H G++ + + LL G L + + T+L+ + +K+A++ LIQ NC+ + Q D
Sbjct: 26 HLGEVASVIITTLLASGRLNIKQISVKTKLAIKSIKSAIVSLIQLNCLYYW---QDDKNP 82
Query: 77 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 124
Y V + V L ++QE+ + E++Q ++ +G L L
Sbjct: 83 TIFYYSVNETGLKTLVYSGDILNHITQEYGDEEAEIIQNIIMNGHLKL 130
>gi|85078174|ref|XP_956123.1| hypothetical protein NCU03560 [Neurospora crassa OR74A]
gi|74622578|sp|Q8WZW7.1|RPC3_NEUCR RecName: Full=DNA-directed RNA polymerase III subunit rpc-3;
Short=RNA polymerase III subunit C3
gi|18376039|emb|CAD21045.1| related to DNA-directed RNA polymerase III chain RPC82 [Neurospora
crassa]
gi|28917171|gb|EAA26887.1| predicted protein [Neurospora crassa OR74A]
Length = 624
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G L A+V L ++G L+ + + ++++LS QVKN L VL Q N + F + D
Sbjct: 19 YGQLPARVYATLFQRGKLSVRLISQFSKLSARQVKNGLCVLQQHNLL--FYS--VDANSG 74
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+Y V + + VR K L ++ + +++Q LL G+
Sbjct: 75 EAEYSVNHEYAYNLVRTGKILEMVDNSYGPAGRDVMQNLLLLGQ 118
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 339 LVQLGELSFV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 397
L+ G FV D +++DF+ ++E + E++S++ + GR R+ R+L G+L
Sbjct: 429 LLAEGHPGFVRHCGEDEWTVDFKPLMENLRATELDSIIEQTSGRQGLRLIRILRTKGKLG 488
Query: 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHV 455
E + + + K D + + ++ G+ +++ + LW + + + +
Sbjct: 489 E-QALQSLSLMRKVDLQQKMLEMRLVGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSSL 547
Query: 456 LDEMFHAALNLSLRVSYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRI 504
+ + + ++ + ++K++L+L KRT G +D R+ + K
Sbjct: 548 IAKCYATMVHCLQVLEVRRQKDKDVLSLA--KRTNVKGKEKDMMRDESYARFAKFLKDER 605
Query: 505 LLESSQMKLDDAILLFHDF 523
LL + M++DD + L D+
Sbjct: 606 LLMAEMMRIDDTLALLQDY 624
>gi|50303501|ref|XP_451692.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74607505|sp|Q6CWJ7.1|RPC3_KLULA RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|49640824|emb|CAH02085.1| KLLA0B03542p [Kluyveromyces lactis]
Length = 657
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
+H G+ + V L+ KG L+ + + + ELS +K L+ LIQ CVQ G
Sbjct: 59 SHLGERASTVLSVLVNKGRLSTREIHSFIPELSLSSIKTVLVSLIQLRCVQYLEETSLSG 118
Query: 75 PKANTQYVVLFDNILHRVRFA-----KFLTILSQEFDQQCVELVQGLLEH----GRLTLK 125
K T Y + L + +A + + +Q+ +Q V + Q ++ + G LT+K
Sbjct: 119 RK--TLYYYFNEEGLFLMLYAGDISDRIVQYFNQDEEQHLVNIAQQIIHNVLALGSLTVK 176
Query: 126 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 159
+SE N D+ ++ + V+L ++
Sbjct: 177 DYL----ASESNSNDTDIFNIHQAFVRLADLEFL 206
>gi|45190324|ref|NP_984578.1| AEL282Wp [Ashbya gossypii ATCC 10895]
gi|74693899|sp|Q758N7.1|RPC3_ASHGO RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|44983220|gb|AAS52402.1| AEL282Wp [Ashbya gossypii ATCC 10895]
Length = 636
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ +V E LL KG L+ + V EL + V+ L+ LIQ CVQ
Sbjct: 40 VARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRCVQYLEETT 99
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD-----QQCVELVQGLLEHGRLTLKQ 126
G K T Y D + + + +F+ + ++VQ +L G LT K
Sbjct: 100 VSGRKI-TYYYFNEDGFQLMLYAGDIVAAVESQFEADDAKEIAAQIVQNVLALGSLTTKD 158
Query: 127 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 174
S V ++ + VKLV ++ P S MP+++
Sbjct: 159 YMQSLASD------VSVNDVASMFVKLVELGFL--VPLSNVHYMPLAD 198
>gi|258571533|ref|XP_002544570.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904840|gb|EEP79241.1| predicted protein [Uncinocarpus reesii 1704]
Length = 652
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL G PL R + + T LS QVK+ L+VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLHHGRQPLPR--IVQNTHLSPRQVKHGLVVLI 58
Query: 60 QQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE- 118
QQ+ V T DG T Y + + VR KF ++ + + +L
Sbjct: 59 QQHLV-FHCTSFDDGI---TYYESDWRAAYNLVRPGKFTQLVKNRLGKHAARVFSTILSL 114
Query: 119 -HGRLT-LKQMFDRAKSSEKEGNLVDLDSLRE 148
H +++ L+ + + SE G + ++ E
Sbjct: 115 GHAKISYLESLPELQPGSEPAGKMNGVNGTHE 146
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
++++++ + ++ E+E +V R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 473 TWAVEYRHLARKLRHLELERLVEARFGSFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 531
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 532 RQILGQMASSGFVELQEVPRDAQRQPSRTIYLWFYDADRVRLMVIEDTYKSMSRCLQRIR 591
Query: 472 YELDREKELL 481
E ++ K LL
Sbjct: 592 VEREKLKYLL 601
>gi|296415506|ref|XP_002837427.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633299|emb|CAZ81618.1| unnamed protein product [Tuber melanosporum]
Length = 643
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+SI+++++ ++ ++ E+E VV + +G R+ R++ G+ LE +I+ +++K+
Sbjct: 465 WSINYKELGKLMRHIELEKVVEETFGEMGLRLLRIIKDKGK-LEEKQIASIALLKQKEIR 523
Query: 415 KILYKLWKDGYLLMEKLVVTGARQ--SQFLLW 444
IL L + GYL ++++ T Q + LW
Sbjct: 524 SILTGLQESGYLHLQEVPKTSIPQISRTYFLW 555
>gi|327357371|gb|EGE86228.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis ATCC
18188]
Length = 664
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL + PL R + + T LS QV++ L VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLYHDRQPLPR--IVQNTRLSPRQVRHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL--L 117
QQ+ + +T+ DG T Y + + VR + L + ++ + +++ + L
Sbjct: 59 QQHLIYHYTSLD-DGI---TYYEASWRTAYNLVRSGRILQFVEKKLGEYAGKVLATILYL 114
Query: 118 EHGRL----TLKQMFDRAKSSEKEGNLVDLDSL 146
H R+ TL ++ +A S ++G L+ +
Sbjct: 115 GHARISYLETLPELRPQATSKARKGATNGLNGV 147
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 485 TWAVEFRHLARRLRHLELERIIESRFGTIAVRVIRVLTAKGKLDE-KRLQEISLMASKEL 543
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 544 RQVLARMETAGFVDLQEVPRDAQRQPSRTMYLWFFDADRVARMVLEDTYKCMSRCLQRIG 603
Query: 472 YELDREKELL 481
E ++ K L
Sbjct: 604 VERNKLKFFL 613
>gi|261194549|ref|XP_002623679.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis
SLH14081]
gi|239588217|gb|EEQ70860.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis
SLH14081]
Length = 664
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL + PL R + + T LS QV++ L VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLYHDRQPLPR--IVQNTRLSPRQVRHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL--L 117
QQ+ + +T+ DG T Y + + VR + L + ++ + +++ + L
Sbjct: 59 QQHLIYHYTSLD-DGI---TYYEASWRTAYNLVRSGRILQFVEKKLGEYAGKVLATILYL 114
Query: 118 EHGRL----TLKQMFDRAKSSEKEGNLVDLDSL 146
H R+ TL ++ +A S ++G L+ +
Sbjct: 115 GHARISYLETLPELRPQATSKARKGATNGLNGV 147
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 485 TWAVEFRHLARRLRHLELERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 543
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 544 RQVLARMETAGFVDLQEVPRDAQRQPSRTMYLWFFDADRVARMVLEDTYKCMSRCLQRIG 603
Query: 472 YELDREKELL 481
E ++ K L
Sbjct: 604 VERNKLKFFL 613
>gi|374107793|gb|AEY96700.1| FAEL282Wp [Ashbya gossypii FDAG1]
Length = 636
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ +V E LL KG L+ + V EL + V+ L+ LIQ CVQ
Sbjct: 40 VARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRCVQYLEETT 99
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD-----QQCVELVQGLLEHGRLTLKQ 126
G K T Y D + + + +F+ + ++VQ +L G LT K
Sbjct: 100 VSGRKI-TYYYFNEDGFQLMLYAGDIVAAVESQFEADDAKEIAAQIVQNVLALGSLTTKD 158
Query: 127 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 174
S V ++ + VKLV ++ P S MP+++
Sbjct: 159 YMQSLASD------VSVNDVASMFVKLVELGFL--VPLSNVHYMPLAD 198
>gi|401887553|gb|EJT51538.1| hypothetical protein A1Q1_07300 [Trichosporon asahii var. asahii
CBS 2479]
gi|406699861|gb|EKD03055.1| hypothetical protein A1Q2_02657 [Trichosporon asahii var. asahii
CBS 8904]
Length = 507
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 86/462 (18%), Positives = 198/462 (42%), Gaps = 71/462 (15%)
Query: 51 VKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI--LHRVRFAKFLTILSQEFDQQ 108
V +L++L+Q + V + + + P+ + + FD I L R+R+ + L + +EF ++
Sbjct: 27 VGASLIILLQHHLVGSTGGSRRNPPE---EEMYEFDIIECLMRLRWGRMLALTEKEFGEE 83
Query: 109 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPL 168
+ +G+LT++++ D + + SLR + ++ ++E P L
Sbjct: 84 -------IFLYGKLTMEEIQDVLAEYDMSAS-----SLRRVVTLMLRRGFLE--PTCAEL 129
Query: 169 LMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKN 228
M S++ ++ K+A I E + E M F + ++ +K+
Sbjct: 130 TMLRSDQIDRRYRELKKAA--IDE------------ITDERMDFRNPSRALKELKVPKKS 175
Query: 229 SNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 288
S++ G+ + + +D V RAN++ + +R++ I + A
Sbjct: 176 SSSALKGKSKGENWDVVD--------GVPLRANYDKYNVLIRNEMIIQAATDRWNAAAGE 227
Query: 289 VLSAMLQATSSAEKKVK-TKNSVPLSLSSI--------YEEVIKSEAGRN---------- 329
V+ A L A+ ++ + + SV ++++ I Y+ ++ G
Sbjct: 228 VMRAALAASIDSQSDPRELRTSVAVNVTQIVDRIPQHAYKLLMAGMVGTGSKNIPEITRQ 287
Query: 330 ----MTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 385
M+ D + + L+ D +S ++ ++ E I ++ + +V +R A R
Sbjct: 288 YLAVMSGDDLASGGGGGRFLTHSDGTSPTFFVELEAICTALKHSLLTELVRERIDEKAAR 347
Query: 386 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQ------S 439
+ +++++ ET + D + ++A IL +L K + ++++ T A+ +
Sbjct: 348 VLAVIAEAKFASET-MVRDCAMIPLREARHILSELQKLSLIDIQEVPKTAAKGRNMFPGN 406
Query: 440 QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
F LW ++ + + +L ++ A N+ R +EL++ LL
Sbjct: 407 DFHLWSIDLRKAYGFLLSGVYKTAANVMQRRQHELEKRSVLL 448
>gi|449300307|gb|EMC96319.1| hypothetical protein BAUCODRAFT_33657 [Baudoinia compniacensis UAMH
10762]
Length = 652
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 351 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 410
S +SI+F + E+++ +S RY + R+ R+L G+ LE I+ +
Sbjct: 461 SHGGWSINFPALTSTLITSELDTTLSSRYSKHHLRLTRMLRSIGK-LEEKSIASLAMMRI 519
Query: 411 KDAPKILYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSL 468
KD ++L +L G + +++L G RQ + LW + + K V++ + A
Sbjct: 520 KDVRELLTELQYAGIVDVQELPKDGRRQPSNTIFLWYCDEDRVRKLVVEWTYKAMARCLQ 579
Query: 469 RVSYELDREK 478
R+ E +REK
Sbjct: 580 RL--ETEREK 587
>gi|367054060|ref|XP_003657408.1| hypothetical protein THITE_2123067 [Thielavia terrestris NRRL 8126]
gi|347004674|gb|AEO71072.1| hypothetical protein THITE_2123067 [Thielavia terrestris NRRL 8126]
Length = 631
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 351 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 410
D +++DF +++ + E++SV+ + GR R+ R+L G+L E + + + K
Sbjct: 449 GPDEWTVDFIPLMKALREAELDSVIEQTSGRQGLRLVRILRAKGKLDEK-ALPNVALMRK 507
Query: 411 KDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSL 468
+ + + +L G++ ++++ V + F LW + + +LD + ++ +
Sbjct: 508 PELQQKMLELQTAGFVDVQEVPRDVKADVKKSFFLWFCDVDRSLERLLDTSYKTMVH-CI 566
Query: 469 RVSYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAI 517
+V L REKE L KRT G +D RY R + L + ++DD +
Sbjct: 567 QVLEAL-REKERDVLETTKRTDVRGREKDTMRKEYYERYARFLECERKLFAQVSRVDDLV 625
Query: 518 LLFHDF 523
+ DF
Sbjct: 626 AVLRDF 631
>gi|255722193|ref|XP_002546031.1| hypothetical protein CTRG_00812 [Candida tropicalis MYA-3404]
gi|240136520|gb|EER36073.1| hypothetical protein CTRG_00812 [Candida tropicalis MYA-3404]
Length = 584
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPK 76
H G++ + + L+ G LT + + TE+ + VK AL+ LIQ NC+ + E+ D
Sbjct: 26 HLGEIASCIISRLISNGRLTAKEISTRTEIPIKNVKTALVSLIQLNCI--YFWEEKD--- 80
Query: 77 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-----DRA 131
Y + +L + + + +E+ + E+VQ +L +G + + D++
Sbjct: 81 KKVYYSLKETGLLLFLYSGDIINHIKKEYGEDEAEIVQNILTYGHVKVNDYLSQFKDDKS 140
Query: 132 KSSEKEGNLVDL 143
K ++E + L
Sbjct: 141 KQIDEENRFLRL 152
>gi|367003123|ref|XP_003686295.1| hypothetical protein TPHA_0G00230 [Tetrapisispora phaffii CBS 4417]
gi|357524596|emb|CCE63861.1| hypothetical protein TPHA_0G00230 [Tetrapisispora phaffii CBS 4417]
Length = 666
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 130/317 (41%), Gaps = 51/317 (16%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE------------LSDEQVKNALLVLIQ 60
V +H G+ V L+ KG LT + RY ++ ++K L+ L+Q
Sbjct: 55 VTKSHLGENAELVIRVLVSKGRLTIHEIHRYISGVLENGMNKFAGINKGKIKKILISLVQ 114
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-CVELVQGLLEH 119
CV +F E KA+T Y V +D + + L +S F+ +VQ +L
Sbjct: 115 LRCV-SFFVENSLNKKASTYYSVNYDGLDILLYNGLILEEVSNRFNSDLATRVVQNILSV 173
Query: 120 GRLTLKQMFDRA--KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
G LT+++ KS E N +++ ++L ++ P S L PI++
Sbjct: 174 GSLTIEEYLHSGDFKSEGIEFN------VKQAFLQLFEQGFL--VPMSMVLHTPIND--- 222
Query: 178 PARKKGSKSAKKIGEPETI-EQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 236
K ++ KKI T+ E + A ++F + D+ KN+ + P
Sbjct: 223 LWNKIYAEEYKKIPRTSTLSELKKKTEAKEKAKVKFLFYFD---DLNNISKNT-MIDPQT 278
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K +L +Q++ NF+ F++ R K + R+ + D A + LQ+
Sbjct: 279 SMK--IL---------KQNIPLTINFDRFLKTRRTKQLVHFARSRVGDIPAFIYKLALQS 327
Query: 297 TSSAEKKVKTKNSVPLS 313
T +NS+P++
Sbjct: 328 TE--------RNSLPVT 336
>gi|444316394|ref|XP_004178854.1| hypothetical protein TBLA_0B05000 [Tetrapisispora blattae CBS 6284]
gi|387511894|emb|CCH59335.1| hypothetical protein TBLA_0B05000 [Tetrapisispora blattae CBS 6284]
Length = 650
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ H G+ V E L+ KG LT R+ R + + +K+ L+ LIQ CV+ + TE+
Sbjct: 45 LVNTHIGERAKLVIELLIDKGRLTVREIYDRLNQFRPKVIKSILVSLIQLRCVR-YHTER 103
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-CVELVQGLLEHGRLTLKQMFDR 130
K+NT Y + L + L + +F+ ++VQ +L G LT D
Sbjct: 104 DFKGKSNTYYYFNEEGPLLWLYSGLILEEIDLQFNSTIATQIVQNILSLGSLTPN---DL 160
Query: 131 AKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 162
+ + N+ L LVKLV + ++ R
Sbjct: 161 QSITTNQKNITK-SKLSTVLVKLVESGFLVRV 191
>gi|170595460|ref|XP_001902390.1| hypothetical protein [Brugia malayi]
gi|158589960|gb|EDP28759.1| conserved hypothetical protein [Brugia malayi]
Length = 354
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 91/414 (21%), Positives = 159/414 (38%), Gaps = 97/414 (23%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
V ++ +HFG + A V LL + P+ Q +++ ++S +++ +++L Q +Q
Sbjct: 9 CVEILEDHFGPIAAAVGNVLLSEAAPLPVIFQRLRKQFKIS--EIRRTMVILDQHGILQ- 65
Query: 67 FTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 126
FT ++ + Q + NIL VR A+ + + + + + ++ GRLT
Sbjct: 66 FTQDERQRIIYSAQVI----NILRLVRSARCSFVAKTLYGEIAEAICEEIISQGRLTCSS 121
Query: 127 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 186
R + + N + ++ +L +V R P E
Sbjct: 122 CIRRVAARLEVSN----NEVKTIFARLAETQFVMRYPRVE-------------------- 157
Query: 187 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 246
+ G P E+ + +P +V D ++E + N KRKH E +
Sbjct: 158 SNFCGCP-IFEKHLDPFMMP----------DVILDAKKQETSVNG--KSRKRKHLSNEKE 204
Query: 247 ECGVADEQSVVYRANFEGFIRRLR--------------HKGCIDHVRAHLDDGAANVLSA 292
+ + + + N+ F R LR H+ CI ++ L +S
Sbjct: 205 D----PDSDIYWHLNYIRFERYLRDEMVITAYESSDAVHENCIKTLKILLK------ISE 254
Query: 293 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASS 352
M +S+A S P+SL+ + E+G VR G L VD
Sbjct: 255 MKADSSAAA-------SFPISLAL----RLLCESG-----GIVRKVGDSAGGLFVVD--- 295
Query: 353 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 406
FEK I + VES + ++ A R+FRLL + G LE D +S T
Sbjct: 296 ------FEKAIAMHCQRHVESAIREKLDVRAVRVFRLLMQKG-FLEEDHVSFMT 342
>gi|159111769|ref|XP_001706115.1| Hypothetical protein GL50803_4155 [Giardia lamblia ATCC 50803]
gi|157434208|gb|EDO78441.1| hypothetical protein GL50803_4155 [Giardia lamblia ATCC 50803]
Length = 487
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 227 KNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 286
K + P K H + L+ V+D Y + E I + + D+V D
Sbjct: 188 KGPESTEPPRKHSHGLHSLESDNVSDSGES-YCVSVEQLIALFQEEELADYVCTVYDRDM 246
Query: 287 ANVLSAMLQATSS-----------AEKKVKTKNSVPLSLSSIYEEVIKSE-----AGRNM 330
V A L ++S A+ + T++ +L +++ ++ ++ G N
Sbjct: 247 GTVFRAALFISNSFQALGFCPFSPADVRPSTRS---FNLEQLHDALMNAQYSLNATGSNF 303
Query: 331 TLDHVRASLVQLG---ELSFVDASSDS-YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRI 386
TL AS+++L + + +SD Y +D + IE Q + +V++R+G A R+
Sbjct: 304 TLSFC-ASVLKLYVSEPKAMMHMTSDGQYIVDIDAAIERMQMAVLLRIVAERHGPMARRM 362
Query: 387 FRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLW 444
F ++ G ++E ++ + + A +L L +GYL + L + ++ + L+
Sbjct: 363 FNIIRARG-MMEASVVAAEGMIPRSQAVSLLTTLCTEGYLQITMLSTSAEPKVETSYFLY 421
Query: 445 KVN 447
N
Sbjct: 422 STN 424
>gi|452845393|gb|EME47326.1| hypothetical protein DOTSEDRAFT_69302 [Dothistroma septosporum
NZE10]
Length = 648
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+ + F + + +++S VS RYG+ A RI RLL + GR LE +++ + KD
Sbjct: 466 WKVHFPSLTDNLIQADIDSTVSARYGKVAVRIVRLLRERGR-LEEKQVAAFVMMRIKDVR 524
Query: 415 KILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKH 454
+L L G++ +++ +RQ ++ LW H
Sbjct: 525 AVLTILQYAGFVESQEIPKDASRQPSRAVY------LWFH 558
>gi|115432954|ref|XP_001216614.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|121735401|sp|Q0CE91.1|RPC3_ASPTN RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|114189466|gb|EAU31166.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 650
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FG+L + L+R LT ++ Y++L D Q++ L ++QQ
Sbjct: 1 MSQYIAELCTLLVEDNFGELFGHIFATLIRYDRLTLPRLRLYSKLPDAQLRRGLAAMVQQ 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
+ V +T+ + + T Y + + +R K L + + + ++ ++
Sbjct: 61 HLVYHYTSYE----EGVTYYEPNLQSAYYLIRAGKILEFIEERLGKYAATVMSTIM 112
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
V A+ S++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + +
Sbjct: 465 VVANLPSWTVEFRSLACKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISL 523
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 465
+ + ++L + G++ ++++ RQ LW + +L++ + +
Sbjct: 524 LPFRVLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWFYDPDRTRASILEDTYKSMSR 583
Query: 466 LSLRVSYELDREKELL 481
R+ +E +R KE L
Sbjct: 584 CLQRLRFERNRLKEFL 599
>gi|116200165|ref|XP_001225894.1| hypothetical protein CHGG_08238 [Chaetomium globosum CBS 148.51]
gi|121779992|sp|Q2GUW6.1|RPC3_CHAGB RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|88179517|gb|EAQ86985.1| hypothetical protein CHGG_08238 [Chaetomium globosum CBS 148.51]
Length = 628
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 89/204 (43%), Gaps = 15/204 (7%)
Query: 334 HVRASLVQLGELS--FV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
+R L+ L E + FV + +++DF +++ + E++SV+ + GR R+ R+L
Sbjct: 426 QLRQHLLMLAESTQHFVRHCGPNEWTVDFVPVMKSLREAELDSVIERTCGRQGLRLVRIL 485
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNR 448
G+L E + + + K + + + ++ G++ ++++ + + F LW +
Sbjct: 486 RAKGKLDEK-ALPNVALMRKPELQQKMLEMQTAGFVSVQEVPRDLKADVKKSFFLWFCDM 544
Query: 449 QILWKHVLD----EMFHA-----ALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRI 499
+LD M H AL R E + ++ D +RY+R
Sbjct: 545 DSSLSRLLDTGYVTMVHCLQVLEALRRKERDVLETTKRTDVRGREKDTMRKSYYERYSRF 604
Query: 500 RKVRILLESSQMKLDDAILLFHDF 523
+ L + M++DD + + DF
Sbjct: 605 LESERKLFAQVMRVDDLVSVLRDF 628
>gi|156099137|ref|XP_001615571.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148804445|gb|EDL45844.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 1023
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR-LLSKSGRLLETDKISDTTFVEKKD 412
+Y+ DF I I +N+ +++ G A RI+ L+S + + + IS+ + D
Sbjct: 815 TYAADFCNIKNIYKNKITTNIIKNMNGSGALRIWNFLISSPEQKVNDEVISENVLIPLND 874
Query: 413 APKILYKLWKDGYLLMEKLVVTGARQSQF---LLWKVNRQILWKHVLDEMFHAALNLSLR 469
K LY L GY+ + + ++ L + N + + +F A N+ +R
Sbjct: 875 VRKKLYNLLYHGYIKCHECNNSNVNKTYIKHSLSFSTNVYYTANKIKENLFTIAKNIYIR 934
Query: 470 VSYELDREKELLN------------LPADKRTG 490
+E + L N LPA+ RTG
Sbjct: 935 KLHENNEINTLHNKSNICANDVGKELPAELRTG 967
>gi|298707346|emb|CBJ29990.1| hypothetical protein Esi_0170_0035 [Ectocarpus siliculosus]
Length = 301
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 28/140 (20%)
Query: 13 VITNHFGDLVAKVCECLLRK-----GPLTR-----QNV-------KRYTELSDEQVKNAL 55
VI + G +V+ V E L+R LTR Q + K T+++ VK +L
Sbjct: 25 VIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESL 84
Query: 56 LVLIQQNCVQAFTTEQPDGPKANT-----------QYVVLFDNILHRVRFAKFLTILSQE 104
L++ Q N V A + + KA Y +L +L R R +F + ++
Sbjct: 85 LIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAART 144
Query: 105 FDQQCVELVQGLLEHGRLTL 124
F + +V L HGR TL
Sbjct: 145 FSKVAGLVVDCFLRHGRRTL 164
>gi|401414336|ref|XP_003871666.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487884|emb|CBZ23129.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 158
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 331 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
T+ RA LV+ + S+ Y+ID + + Q E VV RYG I +LL
Sbjct: 44 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVCIMKLL 97
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA 436
+ LE +++ + ++L++++KDG+LL +++ T A
Sbjct: 98 LQH-HFLEERTLAEQSVATYVKVREVLHQMFKDGFLLQQEVPRTSA 142
>gi|308160777|gb|EFO63250.1| Hypothetical protein GLP15_3091 [Giardia lamblia P15]
Length = 487
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 24/241 (9%)
Query: 227 KNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 286
K S + P K + + L+ ++D Y + E I + + D+V D
Sbjct: 188 KGSESGEPPRKHSYGLHSLEPDNISDSGES-YCVSVEQLIALFQEEELADYVCTVYDRDM 246
Query: 287 ANVLSAMLQATSS---------AEKKVKTKNSVPLSLSSIYEEVIKSE-----AGRNMTL 332
V A L ++S + V+ N+ +L ++ +I ++ G N TL
Sbjct: 247 GTVFRAALFISNSFQALGFCPFSPADVR-PNTRSFNLEQLHGALINTQYSLNATGSNFTL 305
Query: 333 DHVRASLVQLG---ELSFVDASSDS-YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 388
AS++ L + V +SD Y +D + IE Q + +V++R+G A R+F
Sbjct: 306 SFC-ASVLNLYVSEPKAMVHMTSDGQYIVDIDTAIERMQMAVLLRIVAERHGPMARRMFN 364
Query: 389 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKV 446
++ G ++E ++ + + A +L L +GYL + L + ++ + L+ +
Sbjct: 365 IIRARG-MMEASVVAAEGMIPRSQAVSLLTTLCTEGYLQITMLSNSAEPKVETSYFLYSI 423
Query: 447 N 447
N
Sbjct: 424 N 424
>gi|320040943|gb|EFW22876.1| DNA-directed RNA polymerase III subunit RPC-3 [Coccidioides
posadasii str. Silveira]
Length = 603
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
++++++ + + ++ E+E ++ R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 424 TWAVEYRHLAKKLRHLELERLIEARFGGFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 482
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 483 RQILGQMASAGFVELQEVPRDAQRQPSRTMYLWFYDPDRVRFMVIEDTYKSMSRCLQRIR 542
Query: 472 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 522
E ++ K LL +DRY R LL +LD+ + + D
Sbjct: 543 VEREKLKFLLQKTERSDVKGNEDRYLSAAELQTLKEWRDTEKLLLGEVARLDELVAVLRD 602
Query: 523 F 523
+
Sbjct: 603 Y 603
>gi|325094884|gb|EGC48194.1| RNA polymerase III subunit Rpc82 [Ajellomyces capsulatus H88]
Length = 641
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 462 TWTVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 520
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 521 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDPDRVARMVLEDTYKCMSRCLQRIG 580
Query: 472 YELDREKELL 481
E ++ K L
Sbjct: 581 VERNKLKLFL 590
>gi|240276950|gb|EER40460.1| RNA polymerase III subunit Rpc82 [Ajellomyces capsulatus H143]
Length = 641
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 462 TWTVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 520
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 521 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDPDRVARMVLEDTYKCMSRCLQRIG 580
Query: 472 YELDREKELL 481
E ++ K L
Sbjct: 581 VERNKLKLFL 590
>gi|225554605|gb|EEH02901.1| RNA polymerase III subunit Rpc82 [Ajellomyces capsulatus G186AR]
Length = 641
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 462 AWAVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 520
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 521 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDPDRVARMVLEDTYKCMSRCLQRIG 580
Query: 472 YELDREKELL 481
E ++ K L
Sbjct: 581 VERNKLKLFL 590
>gi|365990636|ref|XP_003672147.1| hypothetical protein NDAI_0J00120 [Naumovozyma dairenensis CBS 421]
gi|343770922|emb|CCD26904.1| hypothetical protein NDAI_0J00120 [Naumovozyma dairenensis CBS 421]
Length = 673
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 20/175 (11%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQN-VKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
V ++ +H G+ +K+ E LL G L+ + V + T + E K L+ LIQ CV+ +
Sbjct: 65 VELVKSHLGERASKMVELLLSLGRLSVHDMVDKLTNFTYESAKATLVSLIQLRCVR-YLE 123
Query: 70 EQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ----------CVELVQGLLEH 119
E K T Y D L + + + F Q+ ++Q +L
Sbjct: 124 ETSFSGKKTTYYYYNEDGFLLFLYSGSIIEEMHNYFPQRAKSQDSKLSLAAHIIQNILSL 183
Query: 120 GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 174
G +TLK A S + L V+LV + ++ P ++ PI++
Sbjct: 184 GSVTLKDYLQSASSD------ISTHELTAMFVQLVESEFL--IPITKLNYTPIND 230
>gi|363750233|ref|XP_003645334.1| hypothetical protein Ecym_2821 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888967|gb|AET38517.1| Hypothetical protein Ecym_2821 [Eremothecium cymbalariae
DBVPG#7215]
Length = 644
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 13/158 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKR-YTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ A + LL KG ++ Q + +LS + +K L+ LIQ CVQ + E
Sbjct: 47 VARSHLGERAATLTGMLLNKGRMSAQELSHAIPKLSTKSIKTILVSLIQLRCVQ-YVEET 105
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-----CVELVQGLLEHGRLTLKQ 126
+ T Y + + + +S F + ++VQ +L G LT K
Sbjct: 106 AISGRKTTYYYFCEEGFQLMLYAGDIVETVSSYFAGEHDRDITAQIVQNVLALGSLTTKD 165
Query: 127 -----MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 159
+F +SE +G + L LV L + HY
Sbjct: 166 YKQSIVFGSTSASEVQGLFLKLVE-SGFLVPLSSVHYT 202
>gi|255710411|ref|XP_002551489.1| KLTH0A00616p [Lachancea thermotolerans]
gi|238932866|emb|CAR21047.1| KLTH0A00616p [Lachancea thermotolerans CBS 6340]
Length = 623
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGP 75
H G+ A V L+ KG L+ + + ++ + VK L+ L+Q CVQ + E
Sbjct: 42 THLGERAAAVMNMLVSKGRLSARELCDRLDMDLKSVKRILVSLVQLRCVQ-YCAETSVSG 100
Query: 76 KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-CVELVQGLLEHGRLTLKQMFDRAKS- 133
+ Y D +L + + + + F ++VQ +L G LTLK S
Sbjct: 101 RTTVYYSYCEDGLLLMLYAGEIVEAMQVHFQSDLAAQIVQNVLALGSLTLKAYLSSGLSE 160
Query: 134 -SEKEGNLVDLDSLRETLVKLVTAHYVERCPASE 166
S E + L + +TA+ + CP SE
Sbjct: 161 VSPSEVSAYFLRLFEAGFLVPLTAN--DYCPVSE 192
>gi|239613503|gb|EEQ90490.1| DNA-directed RNA polymerase III subunit rpc3 [Ajellomyces
dermatitidis ER-3]
Length = 645
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 466 TWAVEFRHLARRLRHLELERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 524
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 525 RQVLARMETAGFVDLQEVPRDAQRQPSRTMYLWFFDADRVARMVLEDTYKCMSRCLQRIG 584
Query: 472 YELDREKELL 481
E ++ K L
Sbjct: 585 VERNKLKFFL 594
>gi|429962323|gb|ELA41867.1| hypothetical protein VICG_01051 [Vittaforma corneae ATCC 50505]
Length = 402
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I + +G + + LL+ T ++ T+LSDE + + L +LIQ+ V+ F E+
Sbjct: 6 LILSDYGTIPKTIGMFLLKCNSSTYLQIQSATKLSDEDLTDGLSLLIQRRIVKFFIFEKV 65
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
+Y VL I R+ F+ +L+ +SQ + + + ++ +G
Sbjct: 66 ------YKYSVLKSMIKRRMYFSVYLSYVSQNYSSKHAKYFSKIMVNG 107
>gi|210063897|gb|ACJ06624.1| putative DNA binding protein [Secale cereale]
Length = 55
Score = 38.5 bits (88), Expect = 7.8, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 326 AGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRD 382
G M++ ++ L+ +L + + Y+ D K++E +NEE+ES+V K+YG++
Sbjct: 2 GGAAMSIGQIKPVLL---DLQCTTSDGEEYNFDLSKMVEACRNEEIESLVKKKYGQE 55
>gi|210063891|gb|ACJ06621.1| putative DNA binding protein [Triticum monococcum]
gi|210063895|gb|ACJ06623.1| putative DNA binding protein [Triticum urartu]
Length = 56
Score = 38.5 bits (88), Expect = 9.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 330 MTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDA 383
MT+ ++ L+ +L + + ++ D K++E +NEE+ES+V K+YG++A
Sbjct: 6 MTIGDIKPVLL---DLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEA 56
>gi|114563838|ref|YP_751351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Shewanella frigidimarina NCIMB 400]
gi|114335131|gb|ABI72513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Shewanella frigidimarina NCIMB 400]
Length = 1451
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 317 IYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVS 376
IY+E + + N +L H S++ + E++F+ S Y I+ E IE N ++ +VS
Sbjct: 365 IYDENVILKNIINTSLPHGPKSILLINEIAFIGTKSGLYVINIENGIERKINNDL--IVS 422
Query: 377 KRYGRDAYRIF--------RLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428
+Y + +I+ ++LS +G + T++I+ D KI KLW
Sbjct: 423 IKYSKSENKIYSSNFKGEIQVLSPTGEI--TEEINTNFSYPIYDMIKIGSKLWI------ 474
Query: 429 EKLVVTGARQSQFLLWKVNR 448
A Q+ LLW+ N
Sbjct: 475 -------ASQAGLLLWENNN 487
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,410,168,686
Number of Sequences: 23463169
Number of extensions: 290896337
Number of successful extensions: 910977
Number of sequences better than 100.0: 420
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 909589
Number of HSP's gapped (non-prelim): 805
length of query: 523
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 376
effective length of database: 8,910,109,524
effective search space: 3350201181024
effective search space used: 3350201181024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)