BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009896
         (523 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XUB|A Chain A, Human Rpc62 Subunit Structure
 pdb|2XV4|S Chain S, Structure Of Human Rpc62 (Partial)
          Length = 534

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)

Query: 2   LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
           +T+   K    ++  HFG++V K+   L+R G    + +   T  S +QVK AL VL+Q 
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60

Query: 62  NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
           N V ++   +    +   +Y      +L  +R+ +++      +      +V+ LL +G+
Sbjct: 61  NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115

Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
           LT+    K++ DR   + ++G  +D   +  T V+L   H+V+RCP+     +P +E   
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 170

Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
           P     + +   I E +          +P    + S++       G++ ++S+    GE 
Sbjct: 171 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 213

Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
           K K      D      +  + ++AN + F +  R +  +  V   +D  ++ ++  ML+ 
Sbjct: 214 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273

Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
           +     ++ T +S P +      E+ +S   G N++   +   L  L +  L FV  S D
Sbjct: 274 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328

Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
           S    Y I+  K +       +ESVV +R+G    RIFRL+ +  + +E  ++ D   + 
Sbjct: 329 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 387

Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
            K+A  +LYK+  + ++ ++++  T   A    F L+ VN     + +L   + +  NL 
Sbjct: 388 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447

Query: 468 LRVSYELDREKELL 481
            R  +E    K LL
Sbjct: 448 ERRQFETKENKRLL 461


>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
 pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
          Length = 198

 Score = 29.6 bits (65), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 333 DHVRASLVQLGELSFVDASSDSYSIDF-EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 391
           D  R  L +LG    V+   DS S+DF ++I+E+     V+ V++   G    R  ++L+
Sbjct: 73  DAKREMLSRLG----VEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILA 128

Query: 392 KSGRLLETDK 401
             GR +E  K
Sbjct: 129 PGGRFIELGK 138


>pdb|2NWL|A Chain A, Crystal Structure Of Gltph In Complex With L-Asp
 pdb|2NWL|B Chain B, Crystal Structure Of Gltph In Complex With L-Asp
 pdb|2NWL|C Chain C, Crystal Structure Of Gltph In Complex With L-Asp
          Length = 422

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 1  MLTEYGTKHAVHVITNHFGDLVAKVCECLL 30
          +L  YG  HAVH     FGDL  ++ + L+
Sbjct: 29 ILGHYGYAHAVHTYVKPFGDLFVRLLKMLV 58


>pdb|1XFH|A Chain A, Structure Of Glutamate Transporter Homolog From
          Pyrococcus Horikoshii
 pdb|1XFH|B Chain B, Structure Of Glutamate Transporter Homolog From
          Pyrococcus Horikoshii
 pdb|1XFH|C Chain C, Structure Of Glutamate Transporter Homolog From
          Pyrococcus Horikoshii
 pdb|2NWW|A Chain A, Crystal Structure Of Gltph In Complex With Tboa
 pdb|2NWW|B Chain B, Crystal Structure Of Gltph In Complex With Tboa
 pdb|2NWW|C Chain C, Crystal Structure Of Gltph In Complex With Tboa
 pdb|2NWX|A Chain A, Crystal Structure Of Gltph In Complex With L-Aspartate
          And Sodium Ions
 pdb|2NWX|B Chain B, Crystal Structure Of Gltph In Complex With L-Aspartate
          And Sodium Ions
 pdb|2NWX|C Chain C, Crystal Structure Of Gltph In Complex With L-Aspartate
          And Sodium Ions
          Length = 422

 Score = 29.3 bits (64), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 1  MLTEYGTKHAVHVITNHFGDLVAKVCECLL 30
          +L  YG  HAVH     FGDL  ++ + L+
Sbjct: 29 ILGHYGYAHAVHTYVKPFGDLFVRLLKMLV 58


>pdb|3V8F|A Chain A, Crystal Structure Of Crosslinked Gltph V216c-M385c
          Mutant
 pdb|3V8F|B Chain B, Crystal Structure Of Crosslinked Gltph V216c-M385c
          Mutant
 pdb|3V8F|C Chain C, Crystal Structure Of Crosslinked Gltph V216c-M385c
          Mutant
          Length = 422

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 1  MLTEYGTKHAVHVITNHFGDLVAKVCECLL 30
          +L  YG  HAVH     FGDL  ++ + L+
Sbjct: 29 ILGHYGYAHAVHTYVKPFGDLFVRLLKMLV 58


>pdb|3V8G|A Chain A, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
          Transporter Homologue (Gltph)
 pdb|3V8G|B Chain B, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
          Transporter Homologue (Gltph)
 pdb|3V8G|C Chain C, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
          Transporter Homologue (Gltph)
 pdb|3V8G|D Chain D, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
          Transporter Homologue (Gltph)
 pdb|3V8G|E Chain E, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
          Transporter Homologue (Gltph)
 pdb|3V8G|F Chain F, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
          Transporter Homologue (Gltph)
          Length = 422

 Score = 29.3 bits (64), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 1  MLTEYGTKHAVHVITNHFGDLVAKVCECLL 30
          +L  YG  HAVH     FGDL  ++ + L+
Sbjct: 29 ILGHYGYAHAVHTYVKPFGDLFVRLLKMLV 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,988,085
Number of Sequences: 62578
Number of extensions: 542747
Number of successful extensions: 1339
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 17
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)