BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009896
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZUX1|RPC3_DANRE DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio
GN=polr3c PE=2 SV=1
Length = 539
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/480 (24%), Positives = 213/480 (44%), Gaps = 36/480 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CVQAFTTEQ 71
++ HFGD+V V L+R G LT + + T+L+ + VK +L VL+Q C
Sbjct: 12 LLQEHFGDVVENVGTHLIRNGVLTLRALAHETKLALDLVKKSLCVLVQHGMCTFGPGRRG 71
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQM 127
P GP +Y + ++ILH +R+ +++ + +V+ +L+ G++T+ K +
Sbjct: 72 PAGP---VEYHINCEHILHMLRYPRYIYTAKSLYGDTGELIVEEILQRGQMTMSSTVKTV 128
Query: 128 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 187
DR + EG +D + + +LV H+++RCP M +E G +++
Sbjct: 129 ADRLTHNMPEGQSMDYNEVVSAFSRLVETHFLQRCPP-----MASAESSGTG---SAETP 180
Query: 188 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE 247
+ +P E LP ++ S+ GE ++ + +K K D E
Sbjct: 181 PAVTQPSNPESHPDCYKLPYISLSGHGKRRRSSEDGEADQRA-----AKKAKTDS---SE 232
Query: 248 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 307
CG ++ + ++ NFE F R + I V LD + ++ ML+ S
Sbjct: 233 CG---DEGIHWQVNFERFHLHFRDQAIISAVSCKLDQTSGEIVRTMLR-MSEVTTSANAA 288
Query: 308 NSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YSIDFEKII 363
+ LS + I+ + + LD LV + FV + DS + ++ + +
Sbjct: 289 FTQALSANEIFRALPSNYNIARPILDQYLTLLVD-DPMEFVGKAGDSGGGMFVVNLHRAL 347
Query: 364 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 423
+ESVV +R+G + RIFRLL + R LE ++ D + K+A ++LY L +
Sbjct: 348 ANLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKEMLYTLLSE 406
Query: 424 GYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 481
+ ++++ T A F L+ VN+ + +L + NL R YE K LL
Sbjct: 407 NLVQLQEIPKTPDHAPSRTFYLYAVNQLPTARLLLQHCYKTVGNLIERRLYETKENKRLL 466
>sp|Q2TBL4|RPC3_BOVIN DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus
GN=POLR3C PE=2 SV=1
Length = 533
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 119/494 (24%), Positives = 218/494 (44%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V + + +Y + +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLVTYQVHK-----RGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
+T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +E
Sbjct: 116 MTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPATEN-- 168
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
G P VV + S++ G++ ++S+ GE
Sbjct: 169 ----------SDTGPPPPAPTLVVSEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ +V T + P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D +
Sbjct: 329 SGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>sp|Q9D483|RPC3_MOUSE DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus
GN=Polr3c PE=2 SV=1
Length = 533
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 107/482 (22%), Positives = 213/482 (44%), Gaps = 46/482 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T+ S +QVK AL VLI N V +
Sbjct: 12 LLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVLYHVHK-- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + V+L H+V+RCP L+P ++ +
Sbjct: 127 DRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDTD------------SS 169
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 248
G P V+ + S++ G++ ++S+ GE + D
Sbjct: 170 DRGPPPPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEPKAKKPRYTDNK 224
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
+ + + ++ N + F + R + + V +D ++ ++ ML+ + ++ T +
Sbjct: 225 EPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTPS 279
Query: 309 SVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFEK 361
S P + E+ +S G N++ + L L + L F+ S DS + I+ K
Sbjct: 280 SAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMFVINLHK 339
Query: 362 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
+ +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 ALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKML 398
Query: 422 KDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
+ ++L++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 SENFILLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKR 458
Query: 480 LL 481
LL
Sbjct: 459 LL 460
>sp|Q9BUI4|RPC3_HUMAN DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens
GN=POLR3C PE=1 SV=1
Length = 534
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 223/494 (45%), Gaps = 47/494 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
N V ++ + + +Y +L +R+ +++ + +V+ LL +G+
Sbjct: 61 NLV-SYQVHK----RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGK 115
Query: 122 LTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 177
LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +E
Sbjct: 116 LTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSD 170
Query: 178 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE- 236
P + + I E + +P + S++ G++ ++S+ GE
Sbjct: 171 PGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEP 213
Query: 237 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
K K D + + ++AN + F + R + + V +D ++ ++ ML+
Sbjct: 214 KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRM 273
Query: 297 TSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSD 353
+ ++ T +S P + E+ +S G N++ + L L + L FV S D
Sbjct: 274 S-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 328
Query: 354 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 409
S Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D +
Sbjct: 329 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIP 387
Query: 410 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467
K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + NL
Sbjct: 388 AKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447
Query: 468 LRVSYELDREKELL 481
R +E K LL
Sbjct: 448 ERRQFETKENKRLL 461
>sp|Q5XIL3|RPC3_RAT DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus
GN=Polr3c PE=2 SV=1
Length = 533
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 105/482 (21%), Positives = 211/482 (43%), Gaps = 46/482 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T+ S +QVK AL VLI N V +
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVIYHVHK-- 69
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 128
+ +Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 70 ---RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVA 126
Query: 129 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 188
DR + ++G +D + V+L H+V+RCP L+P ++ S
Sbjct: 127 DRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDTD--------SSDPGP 173
Query: 189 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 248
P + + +P + S++ G++ ++S+ GE + D
Sbjct: 174 PPPAPNLVINEKDMYLVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKKPRCTDNE 224
Query: 249 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 308
+ + ++ N + F + R + + V +D ++ ++ ML+ + ++ T +
Sbjct: 225 EPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTPS 279
Query: 309 SVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFEK 361
P + E+ +S G N++ + L L + L F+ + DS Y I+ K
Sbjct: 280 GAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGDSGGGMYVINLHK 339
Query: 362 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 421
+ +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +LYK+
Sbjct: 340 ALASLSTATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKML 398
Query: 422 KDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 479
+ ++ ++++ T A F L+ VN + +L + + NL R +E K
Sbjct: 399 SENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKR 458
Query: 480 LL 481
LL
Sbjct: 459 LL 460
>sp|Q55FJ5|RPC3_DICDI DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium
discoideum GN=polr3c PE=3 SV=1
Length = 666
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGP----LTRQNVKRYTELSDEQVKNALLVLIQ 60
Y K A+ ++ FGD V KV E L+++G + Q++ L+ +++K LLVLIQ
Sbjct: 2 YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61
Query: 61 QNCVQ------AFTTEQ-----PDGP-KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ 108
N V T ++ P P +++ Y + N +HR+RF KF+ + +
Sbjct: 62 HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDE 121
Query: 109 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSL----RETLVKLVTAHYVERCPA 164
+++ L++HGRL + + +A ++ D D + +T KL+ ++ R P
Sbjct: 122 AAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRAPR 181
Query: 165 SEPLLMPISEEEGPARKKGSKSAKK 189
P+S++E SK AKK
Sbjct: 182 PR----PVSDQE--TSNALSKEAKK 200
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 112/258 (43%), Gaps = 27/258 (10%)
Query: 245 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 304
+D+ + DE V++ N+E FI + K C D V + + + +AM++ K+
Sbjct: 369 MDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVKLC----KRS 424
Query: 305 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS---------- 354
N L+ S +Y E I E R++ L LS + AS S
Sbjct: 425 IRSNQDSLT-SCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMVSKSK 483
Query: 355 ---------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 405
Y ++ II I + + VES++ +++G + R+F+LL LLE +I++
Sbjct: 484 QSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLLLIKN-LLEPKQIAEL 542
Query: 406 TFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAA 463
+ + +L+ + + + ++++ + F L+ V+ + +++F A
Sbjct: 543 AMIPPNECKALLFNMMQKNIIRLQEIPRSSDHFANRTFYLFFVDLPTIIATFTEDIFKAI 602
Query: 464 LNLSLRVSYELDREKELL 481
N R+ EL+ K+ L
Sbjct: 603 YNTRERLKSELEPHKDAL 620
>sp|A3LQX9|RPC3_PICST DNA-directed RNA polymerase III subunit RPC3 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=RPC82 PE=3 SV=1
Length = 599
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGP 75
NH GD+ A + CL+ G LT ++ T++ ++VK+AL+ LIQ NC+ + + G
Sbjct: 26 NHLGDVAALIISCLISYGRLTATDISHRTKIPVKKVKSALVSLIQMNCIFYW---RESGS 82
Query: 76 KANTQYVVLFD--NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 133
K Q F+ IL + ++ ++ + + E+VQ +L +G + ++ +
Sbjct: 83 K---QVFYSFNETGILVFLHSGDIISHVTTHYGEDSAEIVQNILVNGHIRIEDYVNNIDD 139
Query: 134 SEKEGNLVDLDSLRETLVKLVTAHYVER 161
EK+ +D+ +L +L T ++ R
Sbjct: 140 EEKK---LDIQTL---FFRLFTDRWIVR 161
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 302 KKVKTKNS--VPLSLSSIYEEVIKSEA-GRNMTLDHVRASLVQLGELS--FVDASSDSYS 356
KK+KT++S + SL S I+S G +++L L+ G + ++ + SY+
Sbjct: 365 KKIKTEDSDDIAESLESNGTVQIESNGNGNSISLIQHHLKLLSSGSGAQLLIEITPGSYT 424
Query: 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 416
+ + +++ + E++V G +++RI R L KS ++ + IS++ +++K
Sbjct: 425 VPYASLLKYLKQYNFETLVKTTLGPNSFRILRCL-KSLKIGDEKTISNSVLLKEKTVRNE 483
Query: 417 LYKLWKDGYLLMEKLVVTGARQSQ--FLLWK 445
+YKL K L ++++ + R + F L++
Sbjct: 484 IYKLLKANMLEVQEVPRSADRAASKTFYLFR 514
>sp|Q9C106|RPC3_SCHPO DNA-directed RNA polymerase III subunit rpc3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc82 PE=1 SV=1
Length = 591
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/317 (19%), Positives = 136/317 (42%), Gaps = 24/317 (7%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FGD + V LLR G LT +++ T L +++ AL+ L+Q
Sbjct: 1 MSQYAVELCEILVEEFFGDCCSAVASALLRHGRLTIPMLQKRTSLPGPKIRQALVSLMQH 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ V T + + T Y + I + +R K + ++SQ+ +Q+ +V+ L GR
Sbjct: 61 HMVLYVTV--IENVREVTYYETQWKEIYNILRKGKDVYLISQKLNQEAASVVKYLSTQGR 118
Query: 122 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 181
+ ++F+ A + +G+ + +++ L +L+ ++ L+P+ ++E R
Sbjct: 119 ARVLEVFN-AFDKKVDGSDEESRMMQKNLTELIYQKFL--LVVQPRHLIPVGDQEMQLRI 175
Query: 182 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 241
K K E + + V+ ++ +E + E ++ + P ++RK
Sbjct: 176 KHLDRRKSENVSEIKKNREVDDSVALEMLELRAADMSELQGLTRKPKESIPHPTKRRKRA 235
Query: 242 V-----LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 296
V + D + D+ + + + +R ++ G +VLS +
Sbjct: 236 VGSAPSVSTDLNNILDDDNSILVPDLSAHVR--------------INSGKLSVLSKNARL 281
Query: 297 TSSAEKKVKTKNSVPLS 313
T E+++ S+ S
Sbjct: 282 THWVERRIGKSTSLVYS 298
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
Query: 318 YEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD----SYSIDFEKIIEIAQNEEVES 373
YEE + A R + L+ L F+ + ++++F + ++ + E E+
Sbjct: 371 YEESVDENANRKSKVLAQHLELLADCSLKFISKIGNRGMGEWAVNFTHLTDMLRAIEYEN 430
Query: 374 VVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV 433
+ +++G A R+ R++ G++ E ++++ + ++D +L + + G L ++++
Sbjct: 431 FIEQKFGERAIRLLRIIKDKGKI-EEKQLANIALLRQRDLRTVLQAMAEIGALELQEVPR 489
Query: 434 TGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV------SYELDREKELLNLPA 485
+ R F LW + +LDE++H L +R+ +L + E +++
Sbjct: 490 SSDRAPSKTFFLWFHRPDRAYSLLLDELYHVIARLYMRLRDARAQRAQLIEKAERIDIKG 549
Query: 486 DKRTGPLQDRYNRIRKV-----RILLESSQMKLDDAILLFHD 522
++ + ++K+ ++LL++S +LDD +L+F D
Sbjct: 550 NEEQYLQKFEQAELKKLYSYEEKLLLQAS--RLDDMVLVFRD 589
>sp|A1C4R7|RPC3_ASPCL DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=rpc82 PE=3 SV=1
Length = 635
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 456 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 514
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 515 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCFQRLR 574
Query: 472 YELDREKELL 481
+E +R KE L
Sbjct: 575 FERNRLKEFL 584
>sp|A2QUS7|RPC3_ASPNC DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=rpc82 PE=3 SV=1
Length = 627
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 448 TWTVEFRHLARKLRHLELERMIEARYGDVALRVIRVLHAKGKLDEK-RLQEISLLPFKDL 506
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + +L++ + A R+
Sbjct: 507 RQVLASMQSGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRIRSSILEDTYKAMSRCMQRLR 566
Query: 472 YELDREKELL 481
+E +R KE L
Sbjct: 567 FERNRLKEFL 576
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + ++ ++FG+L A++ L R L+ +K Y+ LSD Q+++ L +IQ
Sbjct: 1 MTSQYAAELCALLVEDNFGELFARIFSTLQRYDRLSLPRLKFYSRLSDRQLRHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
+ V +T+ DG T Y + VR K L + + + L++ ++
Sbjct: 61 HHLVYHYTSYD-DG---VTYYEPNLQAAYYLVRSGKILEFIEERLGKYAATLMETIM 113
>sp|Q2U9X7|RPC3_ASPOR DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=rpc82 PE=3 SV=1
Length = 653
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 474 TWTVEFRHLARKLRHLELERIIEARYGDVALRVVRVLHDKGKLDEK-RLQEISLLPFKDL 532
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL++ + A R+
Sbjct: 533 RQVLASMQTGGFVDLQEVPRDALRQPSKTIFLWFYDPDRVGNSVLEDTYKAMSRCLQRLR 592
Query: 472 YELDREKELL 481
+E R KE L
Sbjct: 593 FERSRLKEFL 602
>sp|A6RPU8|RPC3_BOTFB DNA-directed RNA polymerase III subunit rpc3 OS=Botryotinia
fuckeliana (strain B05.10) GN=rpc82 PE=3 SV=1
Length = 637
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 355 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 414
+++DFE++I+ + E++S++ + +G+ +R+ R++ K G+ LE I+ ++++D+
Sbjct: 459 WTVDFERVIDRLRESELDSIIYENFGQIGHRLVRVMRKMGK-LEEKHIAKLALIKQQDSR 517
Query: 415 KILYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 472
L + G + ++++ R LW + + +LD + A R+
Sbjct: 518 TTLVNMQMHGMVDIQEVPRDTGRMIVRTIHLWFCDEDRVTSLLLDRTYKAMSRCLQRLDV 577
Query: 473 ELDREKELLNLPADKRTGPLQDRY------NRIRKVRILLES--SQM-KLDDAILLFHDF 523
E R+ ++ L ++ + N++R++R E Q+ +LD+ + +F D+
Sbjct: 578 EKRRKANIIALSERTDVQGQEEAFLRPEQMNQLREIRAKEEDLLGQICRLDELVGIFQDY 637
>sp|Q5ATV8|RPC3_EMENI DNA-directed RNA polymerase III subunit rpc3 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=rpc82 PE=3 SV=2
Length = 623
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 84/181 (46%), Gaps = 12/181 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E +V RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 444 NWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-RLQEISLLPFKDL 502
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + +L + + A R+
Sbjct: 503 RQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDTYKAMSRCLQRLK 562
Query: 472 YELDREKELL------NLPADKRTGPLQDRYNRIRKVR---ILLESSQMKLDDAILLFHD 522
+E R K+ L ++ ++ + +R+R+ R LL +LDD I + D
Sbjct: 563 FERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEVARLDDMIAVMRD 622
Query: 523 F 523
+
Sbjct: 623 Y 623
>sp|Q5A246|RPC3_CANAL DNA-directed RNA polymerase III subunit RPC3 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=RPC82 PE=3 SV=1
Length = 595
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPTKNIKSALVSLIQLNCIYYWQEEK--- 80
Query: 75 PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-----D 129
Y + +L V + + +++ + E++Q +L HG + ++ D
Sbjct: 81 -DRKFYYSLKETGLLLFVYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQFNHD 139
Query: 130 RAKSSEKEGNLVDLDSLRETLVKLVTAHY 158
++ ++E + L + L+KL H+
Sbjct: 140 KSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
>sp|A1CZP6|RPC3_NEOFI DNA-directed RNA polymerase III subunit rpc3 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=rpc82 PE=3 SV=1
Length = 655
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 476 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 534
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 535 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCLQRLR 594
Query: 472 YELDREKELL 481
+E R K+ L
Sbjct: 595 FERSRIKDFL 604
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQQ+ V +T+
Sbjct: 32 LVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQQHLVYHYTSYD- 90
Query: 73 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 120
DG T Y + + VR K L + + + ++ ++ G
Sbjct: 91 DGV---TYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLSTIMNLG 135
>sp|Q4WEU2|RPC3_ASPFU DNA-directed RNA polymerase III subunit rpc3 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=rpc82 PE=3 SV=1
Length = 629
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 450 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 508
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 509 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCLQRLR 568
Query: 472 YELDREKELL 481
+E R K+ L
Sbjct: 569 FERSRIKDFL 578
Score = 39.3 bits (90), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +++ + ++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQ
Sbjct: 1 MTSQFAAELCELLVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQ 60
Query: 61 QNCVQAFTTEQPDGP---KANTQ---YVVLFDNILHRV--RFAKF-LTILS 102
Q+ V +T+ DG +AN Q Y+V IL V R K+ T+LS
Sbjct: 61 QHLVYHYTSYD-DGVTYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLS 110
>sp|A6R9K6|RPC3_AJECN DNA-directed RNA polymerase III subunit rpc3 OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=RPC82 PE=3 SV=1
Length = 649
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 24/151 (15%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + +IT++FG+L A PL R + + T LS QV++ L VLIQQ
Sbjct: 1 MSQYAAELCKLLITDNFGELYA----------PLPR--IVQNTRLSPRQVRHGLAVLIQQ 48
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+ +T+ DG Y + + VR + L ++ ++ + +++ +L HG
Sbjct: 49 RLIYHYTSLD-DGI---AYYEASWMTAYNLVRSGRILQLVEEKLGKYVAKVLSTILYHGH 104
Query: 122 L------TLKQMFDRAKSSEKEGNLVDLDSL 146
+ TL ++ R + S K G LV + L
Sbjct: 105 VRISYLETLPEL--RPQVSSKAGKLVAANGL 133
Score = 39.3 bits (90), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 470 TWAVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 528
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 529 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDLDRVARMVLEDTYKCMSRCLQRIG 588
Query: 472 YELDREKELL 481
E ++ K L
Sbjct: 589 VERNKLKLFL 598
>sp|Q1DTR6|RPC3_COCIM DNA-directed RNA polymerase III subunit RPC-3 OS=Coccidioides
immitis (strain RS) GN=RPC-82 PE=3 SV=1
Length = 653
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L A + LL G PL R + + T LS QV++ L VL+
Sbjct: 1 MSQYAAELCKLLITDNFGELYALIFIYLLNHGRQPLPR--IVQNTHLSPRQVRHGLAVLV 58
Query: 60 QQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 119
QQ+ V T DG T Y + + + VR K + ++ + + +V LL
Sbjct: 59 QQHLV-FHCTSLDDGI---TYYESNWRSAYNLVRSGKIIQLVEERLGNRAASIVSTLLAL 114
Query: 120 G 120
G
Sbjct: 115 G 115
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 354 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 413
++++++ + + ++ E+E ++ R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 474 TWAVEYRHLAKKLRHLELERLIEARFGGFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 532
Query: 414 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 471
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 533 RQILGQMASAGFVELQEVPRDAQRQPSRTMYLWFYDPDRVRFMVIEDTYKSMSRCLQRIR 592
Query: 472 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 522
E ++ K LL +DRY R LL +LD+ + + D
Sbjct: 593 VEREKLKFLLEKTERSDVKGNEDRYLSAAELQTLKEWRDTEKLLLGEVARLDELVAVLRD 652
Query: 523 F 523
+
Sbjct: 653 Y 653
>sp|A5DRM4|RPC3_LODEL DNA-directed RNA polymerase III subunit RPC3 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=RPC82 PE=3 SV=1
Length = 610
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPK 76
H G++ + + LL G L + + T+L+ + +K+A++ LIQ NC+ + Q D
Sbjct: 26 HLGEVASVIITTLLASGRLNIKQISVKTKLAIKSIKSAIVSLIQLNCLYYW---QDDKNP 82
Query: 77 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 124
Y V + V L ++QE+ + E++Q ++ +G L L
Sbjct: 83 TIFYYSVNETGLKTLVYSGDILNHITQEYGDEEAEIIQNIIMNGHLKL 130
>sp|Q8WZW7|RPC3_NEUCR DNA-directed RNA polymerase III subunit rpc-3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpc-82 PE=3 SV=1
Length = 624
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKA 77
+G L A+V L ++G L+ + + ++++LS QVKN L VL Q N + F + D
Sbjct: 19 YGQLPARVYATLFQRGKLSVRLISQFSKLSARQVKNGLCVLQQHNLL--FYS--VDANSG 74
Query: 78 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 121
+Y V + + VR K L ++ + +++Q LL G+
Sbjct: 75 EAEYSVNHEYAYNLVRTGKILEMVDNSYGPAGRDVMQNLLLLGQ 118
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 339 LVQLGELSFV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 397
L+ G FV D +++DF+ ++E + E++S++ + GR R+ R+L G+L
Sbjct: 429 LLAEGHPGFVRHCGEDEWTVDFKPLMENLRATELDSIIEQTSGRQGLRLIRILRTKGKLG 488
Query: 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHV 455
E + + + K D + + ++ G+ +++ + LW + + + +
Sbjct: 489 E-QALQSLSLMRKVDLQQKMLEMRLVGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSSL 547
Query: 456 LDEMFHAALNLSLRVSYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRI 504
+ + + ++ + ++K++L+L KRT G +D R+ + K
Sbjct: 548 IAKCYATMVHCLQVLEVRRQKDKDVLSLA--KRTNVKGKEKDMMRDESYARFAKFLKDER 605
Query: 505 LLESSQMKLDDAILLFHDF 523
LL + M++DD + L D+
Sbjct: 606 LLMAEMMRIDDTLALLQDY 624
>sp|Q6CWJ7|RPC3_KLULA DNA-directed RNA polymerase III subunit RPC3 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=RPC82 PE=3 SV=1
Length = 657
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
+H G+ + V L+ KG L+ + + + ELS +K L+ LIQ CVQ G
Sbjct: 59 SHLGERASTVLSVLVNKGRLSTREIHSFIPELSLSSIKTVLVSLIQLRCVQYLEETSLSG 118
Query: 75 PKANTQYVVLFDNILHRVRFA-----KFLTILSQEFDQQCVELVQGLLEH----GRLTLK 125
K T Y + L + +A + + +Q+ +Q V + Q ++ + G LT+K
Sbjct: 119 RK--TLYYYFNEEGLFLMLYAGDISDRIVQYFNQDEEQHLVNIAQQIIHNVLALGSLTVK 176
Query: 126 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 159
+SE N D+ ++ + V+L ++
Sbjct: 177 DYL----ASESNSNDTDIFNIHQAFVRLADLEFL 206
>sp|Q758N7|RPC3_ASHGO DNA-directed RNA polymerase III subunit RPC3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPC82 PE=3 SV=1
Length = 636
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ +V E LL KG L+ + V EL + V+ L+ LIQ CVQ
Sbjct: 40 VARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRCVQYLEETT 99
Query: 72 PDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD-----QQCVELVQGLLEHGRLTLKQ 126
G K T Y D + + + +F+ + ++VQ +L G LT K
Sbjct: 100 VSGRKI-TYYYFNEDGFQLMLYAGDIVAAVESQFEADDAKEIAAQIVQNVLALGSLTTKD 158
Query: 127 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 174
S V ++ + VKLV ++ P S MP+++
Sbjct: 159 YMQSLASD------VSVNDVASMFVKLVELGFL--VPLSNVHYMPLAD 198
>sp|Q0CE91|RPC3_ASPTN DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=rpc82 PE=3 SV=1
Length = 650
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FG+L + L+R LT ++ Y++L D Q++ L ++QQ
Sbjct: 1 MSQYIAELCTLLVEDNFGELFGHIFATLIRYDRLTLPRLRLYSKLPDAQLRRGLAAMVQQ 60
Query: 62 NCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 117
+ V +T+ + + T Y + + +R K L + + + ++ ++
Sbjct: 61 HLVYHYTSYE----EGVTYYEPNLQSAYYLIRAGKILEFIEERLGKYAATVMSTIM 112
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 348 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 407
V A+ S++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + +
Sbjct: 465 VVANLPSWTVEFRSLACKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISL 523
Query: 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 465
+ + ++L + G++ ++++ RQ LW + +L++ + +
Sbjct: 524 LPFRVLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWFYDPDRTRASILEDTYKSMSR 583
Query: 466 LSLRVSYELDREKELL 481
R+ +E +R KE L
Sbjct: 584 CLQRLRFERNRLKEFL 599
>sp|Q2GUW6|RPC3_CHAGB DNA-directed RNA polymerase III subunit RPC3 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=RPC82 PE=3 SV=1
Length = 628
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 89/204 (43%), Gaps = 15/204 (7%)
Query: 334 HVRASLVQLGELS--FV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 390
+R L+ L E + FV + +++DF +++ + E++SV+ + GR R+ R+L
Sbjct: 426 QLRQHLLMLAESTQHFVRHCGPNEWTVDFVPVMKSLREAELDSVIERTCGRQGLRLVRIL 485
Query: 391 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNR 448
G+L E + + + K + + + ++ G++ ++++ + + F LW +
Sbjct: 486 RAKGKLDEK-ALPNVALMRKPELQQKMLEMQTAGFVSVQEVPRDLKADVKKSFFLWFCDM 544
Query: 449 QILWKHVLD----EMFHA-----ALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRI 499
+LD M H AL R E + ++ D +RY+R
Sbjct: 545 DSSLSRLLDTGYVTMVHCLQVLEALRRKERDVLETTKRTDVRGREKDTMRKSYYERYSRF 604
Query: 500 RKVRILLESSQMKLDDAILLFHDF 523
+ L + M++DD + + DF
Sbjct: 605 LESERKLFAQVMRVDDLVSVLRDF 628
>sp|C4K2K3|UBIE_RICPU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia peacockii (strain Rustic) GN=ubiE PE=3
SV=1
Length = 248
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 221 DVGEKEKNSNNVTPGEKRKHDVL-ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVR 279
D +K+ NNV K+D++ +L G+ +R + FIR+ I ++
Sbjct: 12 DYTKKQGLVNNVFSNVADKYDLMNDLMSLGL-------HRLWKDEFIRQ------IPNLN 58
Query: 280 AHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLD---HVR 336
+H+ D A+ L+ A +V N++ L+LS I EE++K + + L+ +++
Sbjct: 59 SHILDVASGSGDIALKLAKKARDRV---NNISLTLSDINEEMLKQAKKKAIDLNLFQNLK 115
Query: 337 ASLVQLGELSFVDASSDSYSIDF 359
++ EL F+D S D Y+I F
Sbjct: 116 FTVASAEELPFLDDSFDYYTIAF 138
>sp|A8EZP4|UBIE_RICCK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia canadensis (strain McKiel) GN=ubiE PE=3
SV=1
Length = 248
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 221 DVGEKEKNSNNVTPGEKRKHDVL-ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVR 279
D EK++ NNV K+D++ +L G+ +R + FIR I ++
Sbjct: 12 DYTEKQRLVNNVFSNVADKYDLMNDLMSFGL-------HRLWKDEFIR------YIPNLN 58
Query: 280 AHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLD---HVR 336
+H+ D A+ L+ A + N+V L+LS I EE++++ + + L+ +++
Sbjct: 59 SHILDVASGSGDIALKLAKKARDR---GNNVSLTLSDINEEMLRNAKKKAIDLNLFQNLK 115
Query: 337 ASLVQLGELSFVDASSDSYSIDF 359
+L L F D S D Y+I F
Sbjct: 116 FTLASAAALPFSDNSFDYYTIAF 138
>sp|Q9V7P1|UTP18_DROME U3 small nucleolar RNA-associated protein 18 homolog OS=Drosophila
melanogaster GN=wcd PE=1 SV=1
Length = 506
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 35/153 (22%)
Query: 174 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFS----VVTNVESDVGEK---- 225
E+E PA+ K + K + + E VE +PME + F ++TN+ VG+K
Sbjct: 24 EQEKPAKIKRERYIPKASQAK--ELNYVE--VPMEKVLFGDRQRLLTNLAKSVGQKLPND 79
Query: 226 -----EKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRR-LRHKGCIDHVR 279
E+N PG+KRK + D DE V G +++ +H G ++H+R
Sbjct: 80 DEDEQEENPGQAKPGDKRKAAWSDSD-----DEDLQV------GDVKKATKHTGPLNHLR 128
Query: 280 AHLDDGAANVLSAMLQATSS----AEKKVKTKN 308
D L+A Q T + AEKKVK ++
Sbjct: 129 K--DKSYKEYLTARFQRTLNQPKWAEKKVKNED 159
>sp|A5DQA6|RPC3_PICGU DNA-directed RNA polymerase III subunit RPC3 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPC82 PE=3 SV=2
Length = 588
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPK 76
H G + A L+ G +T + + + + VK L+ LIQ CVQ + E+ G
Sbjct: 27 HLGSVAAVCISILISSGRMTVKQLSSKAGIPVKTVKTTLVSLIQLRCVQ-YWREEGSG-- 83
Query: 77 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 122
Y + I ++ + + + E+ ++ E++Q +LE G +
Sbjct: 84 -RVLYSFNEEGIWILLQSGEIINWIRCEYGEEEAEIIQNILEIGHI 128
>sp|Q6BQ18|RPC3_DEBHA DNA-directed RNA polymerase III subunit RPC3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC82 PE=3 SV=2
Length = 606
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
H G++ A + L+ G LT +++ +E+ + VK+ L+ LIQ +C+ + E
Sbjct: 26 HLGEVAAIIVSTLISYGRLTAKDLSNKSEVPLKLVKSTLVSLIQLSCISYWKEE 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,455,252
Number of Sequences: 539616
Number of extensions: 7178519
Number of successful extensions: 23156
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 23065
Number of HSP's gapped (non-prelim): 102
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)