Query 009896
Match_columns 523
No_of_seqs 125 out of 273
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xub_A DNA-directed RNA polyme 100.0 8.1E-92 2.8E-96 759.7 41.5 489 2-523 1-526 (534)
2 2xub_A DNA-directed RNA polyme 99.2 2E-09 7E-14 116.0 25.7 286 9-392 90-463 (534)
3 1q1h_A TFE, transcription fact 98.2 2.9E-06 1E-10 71.3 7.3 103 370-474 7-110 (110)
4 1q1h_A TFE, transcription fact 96.7 0.0035 1.2E-07 52.1 6.9 83 8-90 6-89 (110)
5 2qlz_A Transcription factor PF 96.2 0.051 1.7E-06 51.6 12.8 133 20-162 12-211 (232)
6 1xmk_A Double-stranded RNA-spe 95.2 0.022 7.6E-07 44.4 4.6 56 384-448 14-70 (79)
7 2oqg_A Possible transcriptiona 94.9 0.46 1.6E-05 39.0 12.6 72 10-88 11-82 (114)
8 1r1u_A CZRA, repressor protein 94.8 0.18 6.3E-06 41.2 9.7 78 8-92 14-91 (106)
9 3pqk_A Biofilm growth-associat 94.2 0.22 7.5E-06 40.3 8.8 83 12-107 15-97 (102)
10 2htj_A P fimbrial regulatory p 93.9 0.14 4.7E-06 39.8 6.6 60 23-86 3-62 (81)
11 3jth_A Transcription activator 93.7 0.22 7.6E-06 39.9 7.7 65 19-90 22-86 (98)
12 3r0a_A Putative transcriptiona 93.6 0.25 8.7E-06 41.7 8.3 57 12-68 16-76 (123)
13 2d1h_A ST1889, 109AA long hypo 93.5 0.57 1.9E-05 37.7 10.0 68 18-85 19-87 (109)
14 1qbj_A Protein (double-strande 93.4 0.082 2.8E-06 41.4 4.4 45 384-429 13-60 (81)
15 3cuo_A Uncharacterized HTH-typ 93.1 0.39 1.3E-05 38.2 8.4 66 19-90 23-88 (99)
16 3r0a_A Putative transcriptiona 93.1 0.89 3.1E-05 38.2 11.0 76 371-449 14-94 (123)
17 2nr3_A Hypothetical protein; A 93.0 1.4 4.8E-05 39.1 12.1 123 18-163 22-161 (183)
18 1u2w_A CADC repressor, cadmium 92.8 0.5 1.7E-05 39.7 8.9 69 19-93 41-109 (122)
19 2kko_A Possible transcriptiona 92.7 0.47 1.6E-05 39.0 8.4 73 10-89 15-87 (108)
20 1ku9_A Hypothetical protein MJ 92.7 0.95 3.3E-05 38.5 10.9 61 381-445 26-87 (152)
21 1oyi_A Double-stranded RNA-bin 92.5 0.062 2.1E-06 42.1 2.5 44 383-428 19-62 (82)
22 2vxz_A Pyrsv_GP04; viral prote 92.0 1.5 5.1E-05 37.9 10.6 92 23-134 14-107 (165)
23 1sfx_A Conserved hypothetical 91.9 0.9 3.1E-05 36.4 9.2 64 378-446 15-80 (109)
24 1ldj_A Cullin homolog 1, CUL-1 91.9 0.9 3.1E-05 50.6 11.9 131 32-163 601-750 (760)
25 1qgp_A Protein (double strande 91.8 0.14 4.9E-06 39.5 3.9 45 384-429 17-64 (77)
26 1sfx_A Conserved hypothetical 91.7 0.79 2.7E-05 36.7 8.6 52 18-69 18-69 (109)
27 3bz6_A UPF0502 protein pspto_2 91.6 3.4 0.00012 36.7 12.8 123 18-163 22-161 (183)
28 2jsc_A Transcriptional regulat 91.5 0.33 1.1E-05 40.6 6.1 71 13-90 14-84 (118)
29 1qgp_A Protein (double strande 91.5 0.43 1.5E-05 36.8 6.3 44 22-65 16-62 (77)
30 1r1t_A Transcriptional repress 91.4 1.2 4.2E-05 37.4 9.7 75 10-91 36-110 (122)
31 2lkp_A Transcriptional regulat 91.3 1.3 4.5E-05 36.6 9.8 79 3-88 15-93 (119)
32 3bdd_A Regulatory protein MARR 91.2 3.8 0.00013 34.3 12.9 75 11-88 20-96 (142)
33 2zkz_A Transcriptional repress 91.1 0.79 2.7E-05 36.9 7.9 67 20-93 27-93 (99)
34 1ub9_A Hypothetical protein PH 91.0 1.2 4.2E-05 35.2 9.0 67 19-88 15-81 (100)
35 1xmk_A Double-stranded RNA-spe 90.8 0.27 9.2E-06 38.2 4.5 46 20-65 11-57 (79)
36 3eyi_A Z-DNA-binding protein 1 90.8 0.42 1.4E-05 35.7 5.2 58 384-446 13-71 (72)
37 3f6o_A Probable transcriptiona 90.4 1.2 3.9E-05 37.1 8.6 71 13-90 11-81 (118)
38 2fu4_A Ferric uptake regulatio 90.0 0.61 2.1E-05 36.0 6.1 59 20-83 17-82 (83)
39 2lnb_A Z-DNA-binding protein 1 89.9 0.29 9.9E-06 37.4 3.8 45 384-428 22-66 (80)
40 3boq_A Transcriptional regulat 89.8 4.6 0.00016 34.7 12.5 114 379-513 45-159 (160)
41 2l02_A Uncharacterized protein 88.9 0.58 2E-05 36.3 4.9 55 15-70 3-57 (82)
42 1sfu_A 34L protein; protein/Z- 88.8 0.17 5.8E-06 38.8 1.8 36 394-429 27-62 (75)
43 1t6s_A Conserved hypothetical 88.8 1.5 5.3E-05 38.8 8.4 139 288-449 10-155 (162)
44 1oyi_A Double-stranded RNA-bin 88.5 0.7 2.4E-05 36.1 5.2 46 20-66 17-62 (82)
45 3f6v_A Possible transcriptiona 88.3 1.2 4E-05 39.0 7.3 65 19-90 57-121 (151)
46 3tgn_A ADC operon repressor AD 88.1 2 6.8E-05 36.4 8.7 64 20-87 38-101 (146)
47 2p4w_A Transcriptional regulat 87.7 1.4 4.9E-05 40.5 7.8 71 19-91 14-84 (202)
48 1z7u_A Hypothetical protein EF 87.7 8.5 0.00029 31.3 11.9 68 16-87 17-86 (112)
49 2hr3_A Probable transcriptiona 87.5 9.4 0.00032 32.1 12.7 62 23-87 38-100 (147)
50 1ku9_A Hypothetical protein MJ 87.5 4.6 0.00016 34.0 10.7 50 18-67 24-74 (152)
51 2d1h_A ST1889, 109AA long hypo 87.4 1.6 5.4E-05 34.9 7.1 66 381-448 21-87 (109)
52 3lmm_A Uncharacterized protein 87.2 0.91 3.1E-05 48.9 7.0 123 22-163 432-564 (583)
53 1xn7_A Hypothetical protein YH 87.2 1.1 3.7E-05 34.7 5.6 43 23-65 5-47 (78)
54 2xvc_A ESCRT-III, SSO0910; cel 86.9 0.68 2.3E-05 33.2 3.8 45 385-429 14-58 (59)
55 2l01_A Uncharacterized protein 86.9 0.69 2.4E-05 35.4 4.2 55 15-70 5-60 (77)
56 1qbj_A Protein (double-strande 86.8 1.1 3.7E-05 34.9 5.5 45 21-65 11-58 (81)
57 3bpv_A Transcriptional regulat 86.8 7.8 0.00027 32.1 11.6 51 381-432 29-79 (138)
58 2pex_A Transcriptional regulat 86.7 3.1 0.00011 35.6 9.2 66 20-88 47-112 (153)
59 2htj_A P fimbrial regulatory p 86.6 0.57 1.9E-05 36.2 3.8 44 384-428 3-46 (81)
60 1y0u_A Arsenical resistance op 86.4 1.6 5.6E-05 34.6 6.6 56 19-86 30-85 (96)
61 2hzt_A Putative HTH-type trans 86.1 4.6 0.00016 32.7 9.3 68 16-87 9-78 (107)
62 1s3j_A YUSO protein; structura 86.0 6.1 0.00021 33.7 10.7 53 378-431 34-86 (155)
63 3bj6_A Transcriptional regulat 86.0 11 0.00036 31.9 12.3 50 379-429 38-87 (152)
64 2oqg_A Possible transcriptiona 86.0 6.7 0.00023 31.6 10.5 59 382-449 22-80 (114)
65 2nnn_A Probable transcriptiona 85.8 5.3 0.00018 33.3 10.0 66 19-87 37-102 (140)
66 1p4x_A Staphylococcal accessor 85.8 2.5 8.7E-05 40.2 8.7 138 16-164 28-209 (250)
67 2cg4_A Regulatory protein ASNC 85.8 2.7 9.4E-05 36.3 8.3 66 383-449 10-79 (152)
68 2qww_A Transcriptional regulat 85.7 8.3 0.00028 32.8 11.5 66 20-87 41-107 (154)
69 2eth_A Transcriptional regulat 85.6 8.3 0.00028 32.9 11.4 66 19-87 43-108 (154)
70 2bv6_A MGRA, HTH-type transcri 85.4 3.4 0.00012 34.8 8.6 61 380-444 36-96 (142)
71 1lj9_A Transcriptional regulat 85.4 7.9 0.00027 32.4 11.0 66 19-87 28-93 (144)
72 2l02_A Uncharacterized protein 85.3 0.81 2.8E-05 35.5 3.9 54 377-431 4-57 (82)
73 2fbh_A Transcriptional regulat 85.3 8.5 0.00029 32.2 11.2 65 20-87 37-102 (146)
74 3bro_A Transcriptional regulat 85.3 15 0.00051 30.5 13.2 65 20-87 34-100 (141)
75 2a61_A Transcriptional regulat 85.3 9.5 0.00032 31.9 11.5 53 379-432 31-83 (145)
76 2k02_A Ferrous iron transport 85.3 1.2 4.3E-05 35.1 5.1 45 23-67 5-49 (87)
77 3bja_A Transcriptional regulat 85.2 6.9 0.00024 32.5 10.5 60 381-444 33-92 (139)
78 2fbi_A Probable transcriptiona 85.0 5.1 0.00018 33.5 9.5 67 18-87 34-100 (142)
79 1z6r_A MLC protein; transcript 84.9 1.1 3.8E-05 45.7 6.1 65 23-87 19-84 (406)
80 2heo_A Z-DNA binding protein 1 84.9 1.7 6E-05 32.2 5.6 44 22-65 12-56 (67)
81 2fa5_A Transcriptional regulat 84.9 3.8 0.00013 35.4 8.8 47 20-66 49-95 (162)
82 3bja_A Transcriptional regulat 84.9 9.3 0.00032 31.6 11.1 65 20-87 33-97 (139)
83 3bpv_A Transcriptional regulat 84.8 7.2 0.00025 32.4 10.4 66 19-87 28-93 (138)
84 2cfx_A HTH-type transcriptiona 84.7 3.4 0.00012 35.4 8.3 66 384-450 8-77 (144)
85 2bv6_A MGRA, HTH-type transcri 84.4 3.9 0.00013 34.4 8.5 65 20-87 37-101 (142)
86 1yyv_A Putative transcriptiona 84.4 8.7 0.0003 32.4 10.6 65 19-87 34-99 (131)
87 2fbi_A Probable transcriptiona 84.4 8.6 0.00029 32.0 10.7 53 379-432 34-86 (142)
88 1jgs_A Multiple antibiotic res 84.3 5.4 0.00018 33.2 9.3 65 20-87 34-98 (138)
89 2hoe_A N-acetylglucosamine kin 84.2 1.3 4.4E-05 44.9 6.2 64 24-88 24-87 (380)
90 3k0l_A Repressor protein; heli 84.2 11 0.00039 32.4 11.7 62 379-444 44-105 (162)
91 2rdp_A Putative transcriptiona 84.2 5.2 0.00018 33.9 9.3 65 20-87 42-106 (150)
92 3cjn_A Transcriptional regulat 84.1 8.2 0.00028 33.2 10.7 65 20-87 52-116 (162)
93 2gxg_A 146AA long hypothetical 84.1 11 0.00038 31.5 11.4 64 20-87 37-100 (146)
94 1sd4_A Penicillinase repressor 84.0 6.4 0.00022 32.4 9.6 100 20-127 10-113 (126)
95 3b73_A PHIH1 repressor-like pr 83.9 1.3 4.5E-05 36.7 4.9 82 19-109 12-100 (111)
96 3s2w_A Transcriptional regulat 83.8 9.2 0.00032 32.8 10.9 62 379-444 48-109 (159)
97 2a61_A Transcriptional regulat 83.8 6.8 0.00023 32.8 9.8 66 19-87 32-97 (145)
98 3eco_A MEPR; mutlidrug efflux 83.6 8.5 0.00029 32.1 10.3 60 381-444 31-92 (139)
99 2heo_A Z-DNA binding protein 1 83.6 1 3.5E-05 33.5 3.8 44 384-427 13-56 (67)
100 2hye_C Cullin-4A, CUL-4A; beta 83.5 3.8 0.00013 45.6 10.0 128 32-163 605-749 (759)
101 2vxz_A Pyrsv_GP04; viral prote 83.2 4.2 0.00014 35.2 7.8 74 384-467 14-87 (165)
102 2nnn_A Probable transcriptiona 83.1 7.5 0.00026 32.3 9.8 51 379-430 36-86 (140)
103 3dpl_C Cullin-5; ubiquitin, NE 83.1 5.3 0.00018 40.5 10.1 131 33-163 214-372 (382)
104 1ub9_A Hypothetical protein PH 83.1 5.6 0.00019 31.1 8.4 50 382-432 17-66 (100)
105 3nrv_A Putative transcriptiona 82.7 4.5 0.00015 34.3 8.2 48 20-67 40-87 (148)
106 2dk5_A DNA-directed RNA polyme 82.6 1.9 6.5E-05 34.3 5.2 65 380-447 19-86 (91)
107 3g3z_A NMB1585, transcriptiona 82.5 7.7 0.00026 32.6 9.7 65 20-87 31-95 (145)
108 3eco_A MEPR; mutlidrug efflux 82.4 5.5 0.00019 33.3 8.6 65 20-87 31-97 (139)
109 3oop_A LIN2960 protein; protei 82.4 9.4 0.00032 32.0 10.2 65 20-87 37-101 (143)
110 2ia0_A Putative HTH-type trans 81.9 5.2 0.00018 35.5 8.5 65 383-449 19-87 (171)
111 1okr_A MECI, methicillin resis 81.7 9.3 0.00032 31.3 9.6 100 20-127 10-113 (123)
112 2l01_A Uncharacterized protein 81.7 1.1 3.9E-05 34.2 3.3 57 376-433 5-62 (77)
113 1xn7_A Hypothetical protein YH 81.6 2.6 9E-05 32.4 5.5 46 110-163 5-50 (78)
114 3bro_A Transcriptional regulat 81.5 8.8 0.0003 31.9 9.6 51 381-432 34-86 (141)
115 2nyx_A Probable transcriptiona 81.4 5.9 0.0002 34.6 8.7 65 20-87 45-109 (168)
116 3cdh_A Transcriptional regulat 81.3 9.1 0.00031 32.6 9.8 65 20-87 43-107 (155)
117 2fsw_A PG_0823 protein; alpha- 81.2 6.2 0.00021 31.9 8.1 65 19-87 24-89 (107)
118 2p5v_A Transcriptional regulat 81.2 5 0.00017 35.0 8.1 67 383-450 12-82 (162)
119 3e6m_A MARR family transcripti 81.1 7.8 0.00027 33.4 9.3 51 378-429 50-100 (161)
120 3bj6_A Transcriptional regulat 81.0 24 0.00081 29.7 13.4 66 19-87 39-104 (152)
121 3ech_A MEXR, multidrug resista 80.9 4.5 0.00015 34.1 7.5 47 20-66 37-83 (142)
122 2h09_A Transcriptional regulat 80.7 16 0.00056 31.2 11.3 63 357-428 24-86 (155)
123 4a5n_A Uncharacterized HTH-typ 80.7 11 0.00039 31.9 9.8 68 16-87 21-90 (131)
124 1z91_A Organic hydroperoxide r 80.6 5.1 0.00017 33.8 7.8 66 20-88 40-105 (147)
125 1s3j_A YUSO protein; structura 80.6 15 0.00052 31.0 11.0 65 20-87 37-101 (155)
126 3ech_A MEXR, multidrug resista 80.5 8.7 0.0003 32.2 9.2 58 371-429 24-84 (142)
127 2jt1_A PEFI protein; solution 80.3 2.3 7.7E-05 32.7 4.7 44 22-65 6-55 (77)
128 3s2w_A Transcriptional regulat 80.3 6.3 0.00022 33.9 8.4 65 20-87 50-114 (159)
129 1z05_A Transcriptional regulat 80.2 1.2 4E-05 46.0 4.1 66 22-87 41-107 (429)
130 3hsr_A HTH-type transcriptiona 80.1 4.9 0.00017 33.8 7.5 65 20-87 36-100 (140)
131 1lj9_A Transcriptional regulat 80.1 14 0.00047 30.9 10.4 52 379-431 27-78 (144)
132 2dbb_A Putative HTH-type trans 79.9 4.2 0.00014 35.0 7.0 67 382-449 10-80 (151)
133 3cjn_A Transcriptional regulat 79.8 12 0.00041 32.1 10.1 53 379-432 50-102 (162)
134 2y75_A HTH-type transcriptiona 79.5 1.9 6.3E-05 36.4 4.5 48 381-428 9-58 (129)
135 2z99_A Putative uncharacterize 79.4 16 0.00053 33.9 11.0 139 288-452 18-163 (219)
136 2rdp_A Putative transcriptiona 79.3 12 0.0004 31.6 9.8 51 381-432 42-92 (150)
137 2k02_A Ferrous iron transport 79.3 2.9 0.0001 32.9 5.1 46 110-163 5-50 (87)
138 3e6m_A MARR family transcripti 78.8 19 0.00064 30.9 11.1 65 20-87 53-117 (161)
139 3fm5_A Transcriptional regulat 78.7 8 0.00027 32.8 8.5 61 380-444 38-99 (150)
140 2gxg_A 146AA long hypothetical 78.5 15 0.0005 30.7 10.1 49 380-430 36-84 (146)
141 3u2r_A Regulatory protein MARR 78.3 32 0.0011 29.6 12.6 62 380-445 45-108 (168)
142 1tbx_A ORF F-93, hypothetical 78.2 13 0.00046 29.1 9.1 61 22-88 10-74 (99)
143 4hbl_A Transcriptional regulat 77.7 11 0.00038 31.9 9.1 65 20-87 41-105 (149)
144 3qph_A TRMB, A global transcri 77.6 1.2 3.9E-05 44.7 2.9 76 383-466 20-95 (342)
145 2fbh_A Transcriptional regulat 77.5 13 0.00043 31.1 9.4 50 379-429 35-85 (146)
146 1i1g_A Transcriptional regulat 77.4 3 0.0001 35.4 5.3 45 23-67 7-51 (141)
147 3k0l_A Repressor protein; heli 77.1 18 0.00063 31.0 10.5 65 20-87 46-110 (162)
148 3cuo_A Uncharacterized HTH-typ 76.9 9.4 0.00032 29.7 7.8 48 381-429 24-71 (99)
149 3kp7_A Transcriptional regulat 76.6 13 0.00046 31.4 9.3 49 379-429 36-84 (151)
150 1on2_A Transcriptional regulat 76.6 24 0.00083 29.5 10.9 42 24-65 12-53 (142)
151 2w25_A Probable transcriptiona 76.1 3.9 0.00014 35.2 5.7 51 18-68 5-55 (150)
152 2f2e_A PA1607; transcription f 76.1 7.9 0.00027 33.3 7.6 61 21-86 25-85 (146)
153 3bdd_A Regulatory protein MARR 76.1 10 0.00034 31.6 8.3 60 372-432 20-81 (142)
154 3i4p_A Transcriptional regulat 76.0 3.9 0.00013 35.9 5.7 65 384-449 6-74 (162)
155 2nyx_A Probable transcriptiona 76.0 21 0.00072 30.9 10.7 51 379-430 43-93 (168)
156 2qww_A Transcriptional regulat 75.9 8 0.00027 32.9 7.7 49 379-428 39-87 (154)
157 1jgs_A Multiple antibiotic res 75.7 20 0.00067 29.6 10.0 49 381-430 34-82 (138)
158 2frh_A SARA, staphylococcal ac 75.7 10 0.00036 31.4 8.1 65 20-87 37-103 (127)
159 2cfx_A HTH-type transcriptiona 75.6 3.8 0.00013 35.1 5.4 47 21-67 6-52 (144)
160 1p6r_A Penicillinase repressor 75.4 4.1 0.00014 31.1 5.0 48 19-66 8-59 (82)
161 3f3x_A Transcriptional regulat 75.4 24 0.00084 29.3 10.6 53 378-432 34-86 (144)
162 3oop_A LIN2960 protein; protei 74.9 8.6 0.00029 32.3 7.5 50 380-430 36-85 (143)
163 3cdh_A Transcriptional regulat 74.9 9.6 0.00033 32.4 7.9 49 379-428 41-89 (155)
164 2y75_A HTH-type transcriptiona 74.9 5.3 0.00018 33.4 6.1 33 33-65 25-57 (129)
165 4hbl_A Transcriptional regulat 74.8 4.9 0.00017 34.3 5.9 62 379-444 39-100 (149)
166 3df8_A Possible HXLR family tr 74.8 20 0.0007 29.0 9.5 61 19-87 26-89 (111)
167 2hr3_A Probable transcriptiona 74.7 11 0.00039 31.5 8.3 47 383-430 37-84 (147)
168 2cyy_A Putative HTH-type trans 74.5 4.1 0.00014 35.1 5.4 49 20-68 7-55 (151)
169 2vn2_A DNAD, chromosome replic 74.1 5 0.00017 33.8 5.7 31 35-65 52-82 (128)
170 3g3z_A NMB1585, transcriptiona 74.1 16 0.00054 30.6 9.1 48 380-428 30-77 (145)
171 2w25_A Probable transcriptiona 74.0 7.1 0.00024 33.5 6.8 67 382-449 8-79 (150)
172 3deu_A Transcriptional regulat 73.9 12 0.0004 32.7 8.3 48 381-429 53-101 (166)
173 3ke2_A Uncharacterized protein 73.9 7.1 0.00024 32.1 6.1 78 27-106 26-103 (117)
174 2dbb_A Putative HTH-type trans 73.7 4.5 0.00015 34.8 5.5 49 19-67 8-56 (151)
175 2pg4_A Uncharacterized protein 73.7 3.2 0.00011 32.7 4.1 52 14-65 7-62 (95)
176 2p5v_A Transcriptional regulat 73.6 4.2 0.00014 35.5 5.3 48 20-67 10-57 (162)
177 2pn6_A ST1022, 150AA long hypo 73.4 4 0.00014 35.1 5.0 45 23-67 6-50 (150)
178 2cg4_A Regulatory protein ASNC 73.1 4.5 0.00015 34.9 5.3 49 20-68 8-56 (152)
179 3qph_A TRMB, A global transcri 72.9 0.23 7.8E-06 49.9 -3.7 69 19-93 17-85 (342)
180 3kp7_A Transcriptional regulat 72.9 16 0.00055 30.9 8.9 45 20-65 38-82 (151)
181 2cyy_A Putative HTH-type trans 72.9 4 0.00014 35.3 4.9 66 383-449 9-78 (151)
182 2dk5_A DNA-directed RNA polyme 72.8 4.2 0.00014 32.2 4.5 43 23-65 23-67 (91)
183 2fa5_A Transcriptional regulat 72.5 16 0.00054 31.2 8.8 53 377-430 43-97 (162)
184 2k4b_A Transcriptional regulat 72.4 4.3 0.00015 32.7 4.6 54 106-163 34-87 (99)
185 1sd4_A Penicillinase repressor 72.4 31 0.001 28.1 10.3 48 382-430 11-62 (126)
186 2fu4_A Ferric uptake regulatio 72.3 5.4 0.00018 30.4 5.0 54 107-163 17-72 (83)
187 3hsr_A HTH-type transcriptiona 72.2 7.2 0.00025 32.8 6.3 53 379-432 34-86 (140)
188 3b73_A PHIH1 repressor-like pr 71.7 3.4 0.00012 34.1 3.9 45 383-428 15-61 (111)
189 1p6r_A Penicillinase repressor 71.7 7.4 0.00025 29.6 5.7 54 106-163 8-61 (82)
190 1i1g_A Transcriptional regulat 71.4 6.6 0.00023 33.2 5.9 66 383-449 6-75 (141)
191 3boq_A Transcriptional regulat 71.0 15 0.00052 31.3 8.3 65 20-87 47-112 (160)
192 1r1u_A CZRA, repressor protein 70.8 18 0.0006 28.9 8.1 61 381-450 26-86 (106)
193 3i4p_A Transcriptional regulat 70.7 5.3 0.00018 35.0 5.2 44 22-65 5-48 (162)
194 3nqo_A MARR-family transcripti 70.5 40 0.0014 29.8 11.3 65 19-86 40-106 (189)
195 2eth_A Transcriptional regulat 70.5 12 0.00043 31.7 7.6 51 379-430 42-92 (154)
196 3fm5_A Transcriptional regulat 70.3 22 0.00074 30.0 9.1 47 20-66 39-86 (150)
197 3k69_A Putative transcription 70.2 5.6 0.00019 35.1 5.3 49 381-429 12-61 (162)
198 3t8r_A Staphylococcus aureus C 70.0 2.6 8.8E-05 36.4 2.9 50 379-428 9-60 (143)
199 2frh_A SARA, staphylococcal ac 69.8 13 0.00043 30.8 7.2 82 382-470 38-121 (127)
200 2e1c_A Putative HTH-type trans 69.7 5.4 0.00018 35.4 5.1 69 380-449 26-98 (171)
201 2h09_A Transcriptional regulat 69.6 6.9 0.00024 33.7 5.7 49 17-65 37-85 (155)
202 2jsc_A Transcriptional regulat 69.0 11 0.00036 31.1 6.5 59 382-449 22-80 (118)
203 3lwf_A LIN1550 protein, putati 68.7 5.4 0.00019 35.1 4.8 51 379-429 25-77 (159)
204 1tbx_A ORF F-93, hypothetical 68.4 20 0.00069 28.0 7.9 50 382-432 9-62 (99)
205 3t8r_A Staphylococcus aureus C 68.3 7.4 0.00025 33.4 5.5 47 19-65 10-59 (143)
206 3u1d_A Uncharacterized protein 68.0 33 0.0011 29.8 9.5 103 10-123 19-127 (151)
207 1r7j_A Conserved hypothetical 68.0 42 0.0014 26.4 10.6 71 20-102 8-78 (95)
208 2kko_A Possible transcriptiona 67.7 24 0.00083 28.3 8.4 54 375-430 19-72 (108)
209 2xrn_A HTH-type transcriptiona 67.7 24 0.00082 32.9 9.5 42 24-65 10-52 (241)
210 2ia0_A Putative HTH-type trans 66.7 8.5 0.00029 34.1 5.7 48 20-67 17-64 (171)
211 1uly_A Hypothetical protein PH 66.7 11 0.00037 34.2 6.5 50 17-67 17-66 (192)
212 3deu_A Transcriptional regulat 66.5 37 0.0012 29.3 9.9 64 21-87 54-118 (166)
213 1y0u_A Arsenical resistance op 66.2 8.6 0.00029 30.2 5.1 46 380-428 30-75 (96)
214 3tgn_A ADC operon repressor AD 65.8 11 0.00037 31.6 6.1 46 383-430 40-85 (146)
215 2pn6_A ST1022, 150AA long hypo 65.6 4 0.00014 35.1 3.3 43 384-427 6-48 (150)
216 3cuq_B Vacuolar protein-sortin 65.5 16 0.00056 33.8 7.6 61 19-85 153-213 (218)
217 2jt1_A PEFI protein; solution 65.5 10 0.00036 28.9 5.2 44 385-428 8-56 (77)
218 3f6o_A Probable transcriptiona 65.4 20 0.00069 29.2 7.5 61 380-449 17-77 (118)
219 2e1c_A Putative HTH-type trans 65.3 8.4 0.00029 34.1 5.4 51 18-68 25-75 (171)
220 3jw4_A Transcriptional regulat 65.2 16 0.00054 30.8 7.1 47 20-66 41-89 (148)
221 3eyy_A Putative iron uptake re 65.0 11 0.00038 32.4 6.0 54 107-163 19-72 (145)
222 1ylf_A RRF2 family protein; st 64.9 4.6 0.00016 34.9 3.5 48 381-428 14-62 (149)
223 2wte_A CSA3; antiviral protein 64.7 8.2 0.00028 36.5 5.5 49 18-66 150-198 (244)
224 2pg4_A Uncharacterized protein 64.7 19 0.00064 28.0 6.9 43 384-427 18-62 (95)
225 2pex_A Transcriptional regulat 64.5 6.9 0.00024 33.3 4.6 47 382-429 48-94 (153)
226 3jw4_A Transcriptional regulat 64.3 8.1 0.00028 32.7 5.0 50 380-430 40-91 (148)
227 2qlz_A Transcription factor PF 64.2 7.9 0.00027 36.3 5.2 44 22-65 166-209 (232)
228 2g9w_A Conserved hypothetical 63.8 46 0.0016 27.8 9.8 49 18-66 7-60 (138)
229 3f3x_A Transcriptional regulat 63.5 53 0.0018 27.1 10.2 65 19-87 36-100 (144)
230 1okr_A MECI, methicillin resis 63.2 36 0.0012 27.5 8.8 48 382-430 11-62 (123)
231 3lwf_A LIN1550 protein, putati 62.3 12 0.00041 32.8 5.8 33 33-65 43-75 (159)
232 2hzt_A Putative HTH-type trans 62.1 58 0.002 25.9 10.1 50 380-431 13-63 (107)
233 3u2r_A Regulatory protein MARR 61.7 24 0.0008 30.5 7.7 48 20-67 46-95 (168)
234 3f6v_A Possible transcriptiona 60.8 16 0.00056 31.5 6.4 58 383-449 60-117 (151)
235 2wte_A CSA3; antiviral protein 60.7 6 0.00021 37.4 3.7 51 378-429 149-199 (244)
236 2z99_A Putative uncharacterize 60.5 69 0.0023 29.6 10.7 121 21-163 16-145 (219)
237 2fe3_A Peroxide operon regulat 60.3 21 0.0007 30.5 6.9 60 20-84 22-87 (145)
238 1mkm_A ICLR transcriptional re 60.2 11 0.00038 35.4 5.5 42 24-65 12-54 (249)
239 3nrv_A Putative transcriptiona 60.1 6.9 0.00024 33.0 3.8 51 381-432 40-90 (148)
240 4ham_A LMO2241 protein; struct 59.5 8.7 0.0003 32.5 4.2 34 395-428 37-70 (134)
241 2lnb_A Z-DNA-binding protein 1 59.1 21 0.0007 27.3 5.6 47 19-65 18-65 (80)
242 4aik_A Transcriptional regulat 59.0 68 0.0023 27.2 10.1 66 379-447 27-94 (151)
243 2fbk_A Transcriptional regulat 58.7 13 0.00043 32.8 5.4 49 380-429 68-119 (181)
244 1ucr_A Protein DSVD; dissimila 58.1 16 0.00056 27.7 4.9 55 23-83 6-65 (78)
245 2fe3_A Peroxide operon regulat 57.9 26 0.0009 29.8 7.2 55 107-164 22-77 (145)
246 3mq0_A Transcriptional repress 57.5 9 0.00031 36.8 4.4 46 382-427 31-76 (275)
247 1u2w_A CADC repressor, cadmium 57.4 13 0.00043 30.8 4.8 45 383-428 44-88 (122)
248 1t6s_A Conserved hypothetical 57.3 85 0.0029 27.4 10.4 123 20-163 7-139 (162)
249 3pqk_A Biofilm growth-associat 57.2 28 0.00096 27.4 6.8 55 372-428 14-68 (102)
250 3jth_A Transcription activator 57.1 20 0.00069 28.0 5.8 48 380-429 22-69 (98)
251 1xd7_A YWNA; structural genomi 56.8 9.3 0.00032 32.8 4.0 49 379-428 7-55 (145)
252 2fsw_A PG_0823 protein; alpha- 56.8 34 0.0012 27.2 7.3 50 380-431 24-74 (107)
253 1sfu_A 34L protein; protein/Z- 56.5 9.6 0.00033 29.0 3.4 34 32-65 27-60 (75)
254 1bja_A Transcription regulator 56.5 18 0.0006 28.9 5.2 46 20-65 16-62 (95)
255 1mzb_A Ferric uptake regulatio 56.1 22 0.00075 30.0 6.2 55 107-164 18-74 (136)
256 2x4h_A Hypothetical protein SS 55.9 84 0.0029 25.8 12.1 35 31-65 28-62 (139)
257 2o03_A Probable zinc uptake re 55.3 24 0.00083 29.5 6.3 56 23-83 14-75 (131)
258 3eyy_A Putative iron uptake re 55.1 22 0.00077 30.4 6.2 57 23-84 22-83 (145)
259 2xrn_A HTH-type transcriptiona 55.0 8.3 0.00028 36.2 3.6 89 382-480 7-98 (241)
260 1z91_A Organic hydroperoxide r 54.8 7.2 0.00025 32.8 2.9 47 382-429 41-87 (147)
261 3tdu_C Cullin-1, CUL-1; E2:E3, 54.7 23 0.00078 27.0 5.4 57 107-163 11-67 (77)
262 3r4k_A Transcriptional regulat 54.7 7.4 0.00025 37.0 3.3 41 25-65 11-52 (260)
263 2fxa_A Protease production reg 54.4 19 0.00066 32.7 6.0 65 20-87 48-112 (207)
264 3mq0_A Transcriptional repress 54.2 8.7 0.0003 36.9 3.7 42 24-65 34-76 (275)
265 2k4b_A Transcriptional regulat 54.2 17 0.00057 29.2 4.8 46 20-65 35-84 (99)
266 2lkp_A Transcriptional regulat 54.1 24 0.00083 28.6 6.1 54 374-429 25-78 (119)
267 1z7u_A Hypothetical protein EF 54.0 83 0.0028 25.1 11.6 50 380-431 21-71 (112)
268 1on2_A Transcriptional regulat 53.9 12 0.00041 31.5 4.2 42 386-428 13-54 (142)
269 3nqo_A MARR-family transcripti 53.7 47 0.0016 29.3 8.5 64 379-446 39-104 (189)
270 2v79_A DNA replication protein 53.6 25 0.00084 29.9 6.1 57 395-455 50-106 (135)
271 1mkm_A ICLR transcriptional re 53.6 11 0.00036 35.6 4.1 46 382-428 9-55 (249)
272 1mzb_A Ferric uptake regulatio 53.3 30 0.001 29.1 6.6 59 21-84 19-84 (136)
273 2o03_A Probable zinc uptake re 53.3 23 0.00078 29.6 5.9 54 108-164 12-66 (131)
274 2xig_A Ferric uptake regulatio 53.1 25 0.00086 30.2 6.2 55 107-164 27-82 (150)
275 2v79_A DNA replication protein 52.0 25 0.00087 29.8 5.9 34 33-66 50-83 (135)
276 4ets_A Ferric uptake regulatio 51.8 26 0.00087 30.7 6.1 54 107-163 33-89 (162)
277 2p4w_A Transcriptional regulat 51.8 26 0.00088 31.9 6.3 51 380-432 14-64 (202)
278 3mwm_A ZUR, putative metal upt 51.7 19 0.00065 30.6 5.1 53 109-164 16-69 (139)
279 1yyv_A Putative transcriptiona 51.5 1E+02 0.0035 25.5 10.1 48 382-431 36-84 (131)
280 2fbk_A Transcriptional regulat 51.5 18 0.00062 31.8 5.2 49 20-68 69-120 (181)
281 2fxa_A Protease production reg 51.3 17 0.00059 33.0 5.1 62 381-446 48-109 (207)
282 2xig_A Ferric uptake regulatio 51.2 32 0.0011 29.5 6.6 57 23-84 30-92 (150)
283 2qvo_A Uncharacterized protein 50.9 22 0.00077 27.6 5.1 46 19-64 11-60 (95)
284 2g9w_A Conserved hypothetical 50.8 26 0.00088 29.5 5.8 54 106-163 8-62 (138)
285 1yg2_A Gene activator APHA; vi 49.8 20 0.00068 31.8 5.1 61 25-87 7-75 (179)
286 1ylf_A RRF2 family protein; st 49.7 22 0.00075 30.5 5.3 33 33-65 29-61 (149)
287 3f8b_A Transcriptional regulat 49.7 86 0.0029 25.4 8.7 67 19-87 11-85 (116)
288 3lmm_A Uncharacterized protein 49.5 13 0.00044 39.9 4.4 95 330-426 456-560 (583)
289 3o2p_E Cell division control p 49.5 31 0.0011 27.0 5.5 57 107-163 23-79 (88)
290 1bja_A Transcription regulator 48.0 36 0.0012 27.0 5.8 49 104-160 11-62 (95)
291 2p5k_A Arginine repressor; DNA 47.9 45 0.0015 23.4 6.0 41 25-69 10-55 (64)
292 2w57_A Ferric uptake regulatio 47.8 22 0.00075 30.6 5.0 54 107-163 17-72 (150)
293 1u5t_A Appears to BE functiona 47.6 28 0.00096 32.5 5.9 117 284-428 94-213 (233)
294 4esf_A PADR-like transcription 47.0 47 0.0016 27.2 6.7 67 19-87 10-82 (117)
295 1r1t_A Transcriptional repress 46.6 30 0.001 28.5 5.5 60 382-450 47-106 (122)
296 3neu_A LIN1836 protein; struct 46.4 73 0.0025 26.2 7.9 32 34-65 36-68 (125)
297 3hhh_A Transcriptional regulat 46.1 1.1E+02 0.0038 24.9 8.8 67 19-87 12-84 (116)
298 1xd7_A YWNA; structural genomi 45.9 38 0.0013 28.8 6.2 45 20-65 9-54 (145)
299 1uly_A Hypothetical protein PH 45.8 17 0.00058 32.9 4.0 47 381-429 20-66 (192)
300 2w57_A Ferric uptake regulatio 44.9 33 0.0011 29.4 5.7 57 23-84 20-83 (150)
301 4aik_A Transcriptional regulat 44.9 1.2E+02 0.004 25.6 9.3 61 24-87 35-96 (151)
302 3mwm_A ZUR, putative metal upt 44.7 37 0.0013 28.7 5.8 57 24-85 18-80 (139)
303 3nw0_B Melanoma-associated ant 44.4 10 0.00035 35.1 2.3 33 412-445 141-174 (217)
304 3dv8_A Transcriptional regulat 43.0 38 0.0013 30.1 6.1 55 11-65 138-200 (220)
305 2b0l_A GTP-sensing transcripti 42.9 8.7 0.0003 31.0 1.4 34 32-65 40-74 (102)
306 2o0y_A Transcriptional regulat 42.7 13 0.00046 35.1 3.0 45 21-65 21-69 (260)
307 2g7u_A Transcriptional regulat 42.3 16 0.00055 34.4 3.5 45 32-86 27-71 (257)
308 4esb_A Transcriptional regulat 42.2 1.2E+02 0.0041 24.5 8.5 67 19-87 8-80 (115)
309 2yu3_A DNA-directed RNA polyme 41.7 29 0.00099 27.6 4.3 47 23-69 40-88 (95)
310 2ia2_A Putative transcriptiona 41.2 14 0.00048 35.1 2.8 45 21-65 19-67 (265)
311 2nr3_A Hypothetical protein; A 40.3 38 0.0013 30.0 5.1 49 17-65 105-158 (183)
312 3k69_A Putative transcription 40.2 26 0.00089 30.7 4.2 42 24-65 16-59 (162)
313 2obp_A Putative DNA-binding pr 40.2 43 0.0015 26.7 5.1 34 33-66 35-68 (96)
314 2gqq_A Leucine-responsive regu 40.1 7.6 0.00026 34.0 0.7 50 18-67 11-60 (163)
315 2qvo_A Uncharacterized protein 39.9 63 0.0021 24.9 6.2 44 382-426 13-60 (95)
316 2ip2_A Probable phenazine-spec 39.9 58 0.002 31.4 7.3 40 25-65 33-72 (334)
317 1p4x_A Staphylococcal accessor 39.8 88 0.003 29.3 8.2 89 377-473 28-121 (250)
318 2gqq_A Leucine-responsive regu 39.0 14 0.00048 32.2 2.3 49 379-428 11-59 (163)
319 3b02_A Transcriptional regulat 39.0 56 0.0019 28.5 6.5 58 8-65 99-170 (195)
320 2x4h_A Hypothetical protein SS 38.9 19 0.00066 30.0 3.1 35 393-428 29-63 (139)
321 2g7u_A Transcriptional regulat 38.7 12 0.00041 35.4 1.9 85 383-479 16-105 (257)
322 2vn2_A DNAD, chromosome replic 38.7 21 0.00072 29.8 3.3 38 397-434 52-89 (128)
323 1iuy_A Cullin-3 homologue; win 38.7 63 0.0021 25.5 5.8 55 109-163 28-82 (92)
324 3bz6_A UPF0502 protein pspto_2 38.5 45 0.0015 29.6 5.3 49 17-65 105-158 (183)
325 3tqn_A Transcriptional regulat 38.4 52 0.0018 26.6 5.6 30 36-65 35-64 (113)
326 3elk_A Putative transcriptiona 37.9 85 0.0029 25.6 6.9 69 19-89 13-87 (117)
327 1xma_A Predicted transcription 37.9 1.7E+02 0.0058 24.8 9.1 64 381-448 41-112 (145)
328 2ek5_A Predicted transcription 37.6 30 0.001 28.9 4.1 32 34-65 27-59 (129)
329 3eyi_A Z-DNA-binding protein 1 37.5 30 0.001 25.7 3.4 44 22-65 12-56 (72)
330 3by6_A Predicted transcription 37.3 57 0.002 27.0 5.8 30 36-65 37-66 (126)
331 3r4k_A Transcriptional regulat 37.1 8.7 0.0003 36.5 0.6 90 382-479 7-99 (260)
332 2f2e_A PA1607; transcription f 36.7 70 0.0024 27.1 6.4 46 382-429 25-70 (146)
333 3ryp_A Catabolite gene activat 36.4 59 0.002 28.6 6.2 56 10-65 129-198 (210)
334 1xma_A Predicted transcription 36.0 1.5E+02 0.0051 25.1 8.4 66 20-87 41-114 (145)
335 4a5n_A Uncharacterized HTH-typ 35.7 1.2E+02 0.0041 25.3 7.6 51 380-432 25-76 (131)
336 1ft9_A Carbon monoxide oxidati 35.2 88 0.003 27.8 7.3 58 8-65 122-194 (222)
337 2zkz_A Transcriptional repress 35.1 1.1E+02 0.0039 23.6 7.1 61 382-451 28-88 (99)
338 1r7j_A Conserved hypothetical 34.8 33 0.0011 27.0 3.7 43 384-429 11-53 (95)
339 2dql_A PEX protein; circadian 34.8 1.3E+02 0.0043 24.4 7.4 58 29-87 30-95 (115)
340 2o0y_A Transcriptional regulat 34.7 12 0.00041 35.5 1.2 86 383-479 25-115 (260)
341 2r3s_A Uncharacterized protein 34.7 63 0.0022 31.0 6.6 81 25-116 31-117 (335)
342 4ham_A LMO2241 protein; struct 34.6 27 0.00092 29.3 3.3 32 34-65 37-69 (134)
343 1v4r_A Transcriptional repress 34.1 6.5 0.00022 31.4 -0.7 32 34-65 34-66 (102)
344 4ets_A Ferric uptake regulatio 34.1 73 0.0025 27.7 6.2 57 23-84 36-100 (162)
345 2ia2_A Putative transcriptiona 34.0 13 0.00044 35.4 1.3 87 383-479 23-112 (265)
346 1w7p_D VPS36P, YLR417W; ESCRT- 33.8 45 0.0015 35.4 5.4 61 19-85 493-560 (566)
347 3u1d_A Uncharacterized protein 33.7 86 0.0029 27.1 6.4 66 382-448 30-99 (151)
348 1lva_A Selenocysteine-specific 33.6 2.9E+02 0.01 25.6 13.5 107 21-163 142-250 (258)
349 3cuq_A Vacuolar-sorting protei 33.1 56 0.0019 30.5 5.4 46 20-65 154-199 (234)
350 3df8_A Possible HXLR family tr 32.7 38 0.0013 27.3 3.8 47 381-429 27-76 (111)
351 3e97_A Transcriptional regulat 32.5 65 0.0022 28.8 5.9 49 17-65 143-206 (231)
352 4b8x_A SCO5413, possible MARR- 32.4 1E+02 0.0035 25.7 6.8 34 32-65 49-82 (147)
353 3cuq_A Vacuolar-sorting protei 31.9 33 0.0011 32.0 3.7 121 283-428 74-200 (234)
354 4ev0_A Transcription regulator 31.7 78 0.0027 27.9 6.2 57 9-65 130-194 (216)
355 3dv8_A Transcriptional regulat 31.4 1.1E+02 0.0038 26.9 7.3 49 379-428 145-201 (220)
356 1qzz_A RDMB, aclacinomycin-10- 31.4 47 0.0016 32.7 5.0 40 25-65 41-80 (374)
357 3k2z_A LEXA repressor; winged 31.4 64 0.0022 28.8 5.5 43 23-65 12-55 (196)
358 1z6r_A MLC protein; transcript 31.3 30 0.001 34.8 3.6 44 384-428 19-62 (406)
359 3elk_A Putative transcriptiona 31.2 77 0.0026 25.9 5.5 35 408-442 45-79 (117)
360 1tw3_A COMT, carminomycin 4-O- 31.0 48 0.0016 32.4 5.0 40 25-65 44-83 (360)
361 3k2z_A LEXA repressor; winged 31.0 37 0.0013 30.4 3.8 40 389-428 17-56 (196)
362 1u5t_A Appears to BE functiona 30.9 60 0.0021 30.3 5.2 47 19-65 166-212 (233)
363 2fmy_A COOA, carbon monoxide o 30.7 86 0.0029 27.8 6.4 57 9-65 127-198 (220)
364 3iwz_A CAP-like, catabolite ac 30.4 1.2E+02 0.004 27.0 7.3 57 9-65 148-218 (230)
365 2qc0_A Uncharacterized protein 30.4 55 0.0019 32.7 5.3 54 373-427 288-342 (373)
366 2gau_A Transcriptional regulat 30.3 1.1E+02 0.0038 27.2 7.2 57 9-65 141-211 (232)
367 3e6c_C CPRK, cyclic nucleotide 30.0 1.2E+02 0.0041 27.5 7.4 57 9-65 137-208 (250)
368 2hoe_A N-acetylglucosamine kin 29.9 34 0.0012 34.2 3.7 45 384-430 23-67 (380)
369 3la7_A Global nitrogen regulat 29.8 1.1E+02 0.0036 27.9 6.9 54 12-65 156-224 (243)
370 2zcw_A TTHA1359, transcription 29.7 1.3E+02 0.0043 26.3 7.3 58 8-65 106-177 (202)
371 3eqx_A FIC domain containing t 29.7 65 0.0022 32.3 5.7 53 374-427 289-342 (373)
372 1z05_A Transcriptional regulat 29.7 38 0.0013 34.4 4.0 45 384-429 42-86 (429)
373 4b8x_A SCO5413, possible MARR- 29.4 75 0.0026 26.6 5.4 66 378-447 30-99 (147)
374 3hrs_A Metalloregulator SCAR; 29.2 48 0.0016 30.2 4.3 41 25-65 11-51 (214)
375 3iwz_A CAP-like, catabolite ac 28.9 1.6E+02 0.0056 25.9 8.0 56 373-429 151-220 (230)
376 3k4g_A DNA-directed RNA polyme 28.9 80 0.0027 24.6 4.8 46 20-65 18-71 (86)
377 2gau_A Transcriptional regulat 28.4 1.7E+02 0.0059 25.9 8.1 31 398-428 182-212 (232)
378 2obp_A Putative DNA-binding pr 28.2 66 0.0023 25.5 4.3 34 394-428 35-68 (96)
379 2l0k_A Stage III sporulation p 28.1 60 0.0021 25.6 4.1 34 21-55 8-41 (93)
380 3la7_A Global nitrogen regulat 28.1 1.7E+02 0.0057 26.4 8.0 51 378-429 161-226 (243)
381 1x19_A CRTF-related protein; m 28.0 85 0.0029 30.6 6.3 40 25-65 56-95 (359)
382 1j5y_A Transcriptional regulat 27.9 72 0.0025 28.2 5.2 45 21-65 22-68 (187)
383 3d0s_A Transcriptional regulat 27.8 1.2E+02 0.004 26.9 6.8 56 10-65 138-208 (227)
384 3g2b_A Coenzyme PQQ synthesis 27.7 56 0.0019 25.8 3.9 54 105-160 41-94 (95)
385 4a6d_A Hydroxyindole O-methylt 27.7 1.4E+02 0.0047 29.2 7.7 56 25-86 33-89 (353)
386 3ryp_A Catabolite gene activat 27.6 1.5E+02 0.0053 25.7 7.5 53 376-429 134-200 (210)
387 1hsj_A Fusion protein consisti 27.4 33 0.0011 35.3 3.1 69 377-449 398-470 (487)
388 4esf_A PADR-like transcription 27.1 96 0.0033 25.3 5.4 39 407-447 41-79 (117)
389 3f8b_A Transcriptional regulat 26.8 2.1E+02 0.0072 23.0 7.5 53 110-162 14-66 (116)
390 1u5t_B Defective in vacuolar p 26.7 81 0.0028 27.8 5.1 59 21-85 100-165 (169)
391 3ihu_A Transcriptional regulat 26.7 45 0.0015 30.4 3.6 32 34-65 39-70 (222)
392 3cuq_B Vacuolar protein-sortin 26.4 1.7E+02 0.0059 26.7 7.6 106 309-430 93-202 (218)
393 3l7w_A Putative uncharacterize 26.4 2.4E+02 0.0081 22.2 9.0 62 23-87 12-77 (108)
394 3b02_A Transcriptional regulat 26.2 1.2E+02 0.0043 26.2 6.5 51 377-428 107-171 (195)
395 2do7_A Cullin-4B, CUL-4B; heli 26.1 1.3E+02 0.0045 24.0 5.8 54 108-163 32-85 (101)
396 2oz6_A Virulence factor regula 26.0 1.3E+02 0.0044 26.1 6.6 53 13-65 129-195 (207)
397 3l09_A Putative transcriptiona 26.0 1.4E+02 0.0047 28.4 6.9 53 29-87 36-92 (266)
398 4esb_A Transcriptional regulat 25.5 1.2E+02 0.0041 24.5 5.7 35 408-442 40-74 (115)
399 3i53_A O-methyltransferase; CO 25.5 72 0.0025 30.7 5.1 40 25-65 30-69 (332)
400 2wa0_A Melanoma-associated ant 25.4 32 0.0011 32.3 2.3 35 411-446 164-199 (240)
401 2lky_A Uncharacterized protein 25.4 1.2E+02 0.0041 24.7 5.4 53 102-159 39-94 (112)
402 4g6q_A Putative uncharacterize 25.2 53 0.0018 29.1 3.7 66 20-87 23-89 (182)
403 2zcw_A TTHA1359, transcription 25.2 2E+02 0.0067 24.9 7.7 52 376-428 113-178 (202)
404 2v7f_A RPS19, RPS19E SSU ribos 24.6 1.3E+02 0.0045 25.8 6.0 58 106-163 52-115 (150)
405 1z3e_B DNA-directed RNA polyme 24.6 1E+02 0.0036 23.0 4.6 45 20-64 15-67 (73)
406 2zfw_A PEX; five alpha-helices 24.4 1.4E+02 0.0047 25.6 6.1 59 28-87 51-117 (148)
407 3d0s_A Transcriptional regulat 24.2 2.2E+02 0.0074 25.1 7.9 51 377-428 144-209 (227)
408 3e6c_C CPRK, cyclic nucleotide 23.9 1.6E+02 0.0056 26.6 7.1 52 376-428 143-209 (250)
409 4ev0_A Transcription regulator 23.6 1.1E+02 0.0037 26.8 5.6 46 382-428 142-195 (216)
410 3dp7_A SAM-dependent methyltra 23.6 79 0.0027 31.1 5.1 69 9-87 15-93 (363)
411 2bgc_A PRFA; bacterial infecti 23.6 2.2E+02 0.0077 25.4 7.9 70 359-429 117-203 (238)
412 2oz6_A Virulence factor regula 23.5 2.5E+02 0.0085 24.2 8.0 32 398-429 166-197 (207)
413 3e97_A Transcriptional regulat 23.3 69 0.0023 28.7 4.2 31 398-428 177-207 (231)
414 2v7f_A RPS19, RPS19E SSU ribos 23.3 71 0.0024 27.5 4.0 46 20-65 53-112 (150)
415 2yu3_A DNA-directed RNA polyme 23.2 1.1E+02 0.0038 24.2 4.8 43 384-427 40-84 (95)
416 3c7j_A Transcriptional regulat 23.1 58 0.002 30.1 3.7 33 33-65 48-80 (237)
417 3dkw_A DNR protein; CRP-FNR, H 23.1 1.8E+02 0.0062 25.5 7.1 54 12-65 144-209 (227)
418 2v9v_A Selenocysteine-specific 23.1 1.1E+02 0.0038 25.1 5.2 50 19-68 1-51 (135)
419 1hsj_A Fusion protein consisti 23.0 97 0.0033 31.6 5.8 42 24-65 408-451 (487)
420 1yg2_A Gene activator APHA; vi 23.0 1.6E+02 0.0055 25.6 6.5 52 112-163 6-57 (179)
421 3htu_A Vacuolar protein-sortin 22.8 2.2E+02 0.0076 21.6 6.2 50 21-70 10-71 (79)
422 3tqn_A Transcriptional regulat 22.8 1.1E+02 0.0039 24.4 5.1 31 398-428 35-65 (113)
423 2esh_A Conserved hypothetical 22.8 2.9E+02 0.01 22.0 8.1 88 19-112 12-108 (118)
424 3hrs_A Metalloregulator SCAR; 22.8 36 0.0012 31.0 2.1 42 386-428 11-52 (214)
425 1j5y_A Transcriptional regulat 22.8 67 0.0023 28.5 3.9 45 384-428 24-69 (187)
426 3kcc_A Catabolite gene activat 22.7 1.3E+02 0.0045 27.6 6.2 55 11-65 180-248 (260)
427 3gfk_B DNA-directed RNA polyme 22.4 78 0.0027 24.2 3.6 46 20-65 22-75 (79)
428 4g6q_A Putative uncharacterize 22.4 80 0.0027 27.9 4.3 48 384-433 26-74 (182)
429 2ek5_A Predicted transcription 22.2 1.1E+02 0.0038 25.3 4.9 31 398-428 30-60 (129)
430 3sxy_A Transcriptional regulat 22.0 46 0.0016 30.1 2.7 32 34-65 35-66 (218)
431 2e1n_A PEX, period extender; c 22.0 2.1E+02 0.0072 24.0 6.7 58 29-87 42-107 (138)
432 1j1v_A Chromosomal replication 21.8 2.5E+02 0.0084 21.9 6.6 48 10-57 6-70 (94)
433 3mzy_A RNA polymerase sigma-H 21.5 2.6E+02 0.0091 22.8 7.5 47 11-59 103-149 (164)
434 2kvc_A Putative uncharacterize 21.3 1.3E+02 0.0044 24.2 4.7 56 102-159 37-92 (103)
435 4fx0_A Probable transcriptiona 21.1 1.1E+02 0.0038 25.6 4.9 41 25-65 38-83 (148)
436 3ri2_A Transcriptional regulat 21.0 3.4E+02 0.012 22.1 8.1 66 19-88 20-90 (123)
437 3f8m_A GNTR-family protein tra 20.9 88 0.003 29.1 4.5 33 33-65 34-67 (248)
438 3hhh_A Transcriptional regulat 20.8 1.6E+02 0.0056 23.8 5.6 39 407-447 43-81 (116)
439 2o0m_A Transcriptional regulat 20.2 22 0.00074 35.2 0.0 44 384-428 23-66 (345)
No 1
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=100.00 E-value=8.1e-92 Score=759.74 Aligned_cols=489 Identities=21% Similarity=0.376 Sum_probs=376.8
Q ss_pred ccHHHHHHHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEE
Q 009896 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQY 81 (523)
Q Consensus 2 ~~~~~~~Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y 81 (523)
||+++++||++||+++||++|++||++|+++|++||++|++.|++++++||+||++|||||||.|+..+. ..++|
T Consensus 1 Ms~~~~~L~~~li~~~FG~~~~~V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~-----~~~~Y 75 (534)
T 2xub_A 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKR-----GVVEY 75 (534)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT-----TEEEE
T ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCC-----CcEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999665532 25899
Q ss_pred EechhhHHHHhchhhHHHHHHHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhccc----CCCccCHHHHHHHHHHHHhcc
Q 009896 82 VVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEK----EGNLVDLDSLRETLVKLVTAH 157 (523)
Q Consensus 82 ~~~~~~il~rlR~p~~i~~i~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~----~~~~~~~~~i~~~f~~Lv~~~ 157 (523)
++|+++||+|+|||+||.+|+++||++|+.|+++||.+|++|+++++..+.++.+ +++..+...++++|.+|+++|
T Consensus 76 ~~~~~~il~~lR~pk~l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~ 155 (534)
T 2xub_A 76 EAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTH 155 (534)
T ss_dssp EECHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTT
T ss_pred EEChhhHHHHHhhHHHHHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999876532 222347889999999999999
Q ss_pred cceecCCCCCCCCCCCCCCCcccccCCCCccccCCchhhhHHHHHHhCccchhhhhhhh-ccccccccccc-CCCCCCCC
Q 009896 158 YVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVT-NVESDVGEKEK-NSNNVTPG 235 (523)
Q Consensus 158 fi~~v~~~~~~~~p~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~~ 235 (523)
||+|||+..+..+ +++.. ..|.+. +.. .+.+.|..|. +.....+++.+ .+..+.++
T Consensus 156 fI~rv~~~~~~~~--~~~~~---~~~~~~---~~~--------------~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~ 213 (534)
T 2xub_A 156 FVQRCPSVPTTEN--SDPGP---PPPAPT---LVI--------------NEKDMYLVPKLSLIGKGKRRRSSDEDAAGEP 213 (534)
T ss_dssp SEEECCCC------------------------------------------------------------------------
T ss_pred CEEeCCCCCcccc--ccccc---ccCCch---hhh--------------cchhhhccchhhhHHHhhhccccCCcccccc
Confidence 9999986432111 11100 011110 000 0001111111 00000111110 11111233
Q ss_pred CccccccccccccCcCCCCceEEEeehhhHHHHhchhHHHHHHHhhcCccHHHHHHHHHhccchhcccccccCCccccHH
Q 009896 236 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLS 315 (523)
Q Consensus 236 ~krk~~~~~~d~~~~~~~~~~~~rvN~e~f~~~lR~~~iv~~v~~r~~~~a~~v~~~~L~~~~~~~~~~~~~~s~~~s~~ 315 (523)
+|++.+..++|+ +...+++++|||||++|+++||++.|+++|++|+|..||.||++||++.+..+ ++|.+.|.|++++
T Consensus 214 ~~k~~~~~~~~~-~~~~d~~~~wrvN~erf~~~lR~~~lv~~v~~r~~~~a~~V~~~lL~~~e~~~-~~~~~~s~~is~~ 291 (534)
T 2xub_A 214 KAKRPKYTTDNK-EPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITT-SSSAPFTQPLSSN 291 (534)
T ss_dssp ------------------CTTSEEECHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-CTTCSBCCCEEHH
T ss_pred ccccccCCCccc-cccCCCCceEEeeHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhccC-CccccCCCcccHH
Confidence 444433222221 23457889999999999999999999999999999999999999999988766 5677889999999
Q ss_pred HHHHHhhhhccCCCCCHHHHHHHHHHhccCC------CCCCCCCeEEEehHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 009896 316 SIYEEVIKSEAGRNMTLDHVRASLVQLGELS------FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRL 389 (523)
Q Consensus 316 ~I~~~l~~~~~~~~~~~~~i~~~L~~La~~~------~~~~~~~~y~V~~~~i~~~lr~~~le~~v~~~~G~~a~RI~r~ 389 (523)
+|.+.++ .+.+++.+.+.+||.+|++++ ++++|+|+|+|||+++++.||+.+++++|.++||..|+||||+
T Consensus 292 ~I~~~l~---~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~g~g~y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~RI~r~ 368 (534)
T 2xub_A 292 EIFRSLP---VGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRL 368 (534)
T ss_dssp HHHHTSC---TTCCCCHHHHHHHHHHHHSCTTCCEEECCCCSSCEEEEBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHcC---CcccccHHHHHHHHHHHhCCcHHhhhccccCCCceEEEeHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 9999994 357788999999999999998 3467899999999999999999999999999999999999999
Q ss_pred HHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCC--CCceEEEEEEEchHHHHHHHHHHHHHHHHHHH
Q 009896 390 LSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 467 (523)
Q Consensus 390 L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~--~~~~t~~lw~v~~~~~~~~~l~~~~k~~~nl~ 467 (523)
|+.+|++ ||++|++.+|||.|++|++||+|+++|||++||+||++ +|+|+||||++|.+++..++++++||++.||+
T Consensus 369 L~~~~~l-~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~~~~~l~~~~~k~l~nl~ 447 (534)
T 2xub_A 369 VLQKKHI-EQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLI 447 (534)
T ss_dssp HHHC----CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 99999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccccc-----------------------cCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 009896 468 LRVSYELDREKELLNLPA-----------------------DKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 523 (523)
Q Consensus 468 ~R~~~e~~~~k~ll~k~~-----------------------~~~~~~e~~~l~~~~~~~~~L~~~~~rlD~~l~ll~d~ 523 (523)
+|+++|+++++.||+|.+ ++.+|+|+++|++|++++++|+++++|||++||+|+||
T Consensus 448 ~Rl~~E~~~~~~lL~k~eR~d~~~~~vk~~~~~~~~~~e~~e~lt~~e~~~l~~~~~~~~~L~~~~~~lD~~i~vl~dy 526 (534)
T 2xub_A 448 ERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESY 526 (534)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHCCC--------CHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhhhhHHHHhhccccchhhhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 999999999999999943 35679999999999999999999999999999999997
No 2
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=99.22 E-value=2e-09 Score=115.99 Aligned_cols=286 Identities=17% Similarity=0.235 Sum_probs=179.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcC------------CCHHHHHHHHHHHHhhcccccccccCC----
Q 009896 9 HAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE------------LSDEQVKNALLVLIQQNCVQAFTTEQP---- 72 (523)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~------------l~~~~vr~aL~vLiQhn~V~~~~~~~~---- 72 (523)
....+|++.||+.++.|+..|+.+|++|+.+|..... -+...++.++.-|+++|+|....+...
T Consensus 90 k~l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~~~~~~~~ 169 (534)
T 2xub_A 90 RYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENS 169 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCCC------
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCCCCccccc
Confidence 3578999999999999999999999999999976531 467899999999999999984332110
Q ss_pred ------------------------------------C-C--------------------CCcceEEEechhhHHHHhchh
Q 009896 73 ------------------------------------D-G--------------------PKANTQYVVLFDNILHRVRFA 95 (523)
Q Consensus 73 ------------------------------------~-~--------------------~~~~~~Y~~~~~~il~rlR~p 95 (523)
+ + +....+|.+|++.....+|--
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~d~~~~wrvN~erf~~~lR~~ 249 (534)
T 2xub_A 170 DPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQ 249 (534)
T ss_dssp -------------------------------------------------------------CTTSEEECHHHHHHHHHHH
T ss_pred ccccccCCchhhhcchhhhccchhhhHHHhhhccccCCccccccccccccCCCccccccCCCCceEEeeHHHHHHHHHHH
Confidence 0 0 013468999999999999999
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCCCCCCCCCCCCC
Q 009896 96 KFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 175 (523)
Q Consensus 96 ~~i~~i~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~~~~~~~~p~~~~ 175 (523)
.++.+++++||..++.|++.+|.....+.+. ..+.+...+..+|.+.+ |. .....
T Consensus 250 ~lv~~v~~r~~~~a~~V~~~lL~~~e~~~~~-------~~~~s~~is~~~I~~~l------------~~-~~~l~----- 304 (534)
T 2xub_A 250 AIVSAVANRMDQTSSEIVRTMLRMSEITTSS-------SAPFTQPLSSNEIFRSL------------PV-GYNIS----- 304 (534)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTTTSCT-------TCSBCCCEEHHHHHHTS------------CT-TCCCC-----
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhccCCc-------cccCCCcccHHHHHHHc------------CC-ccccc-----
Confidence 9999999999999999999999754433211 00001111222222111 10 00000
Q ss_pred CCcccccCCCCccccCCchhhhHHHHHHhCccchhhhhhhhcccccccccccCCCCCCCCCccccccccccccCcCCCCc
Q 009896 176 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQS 255 (523)
Q Consensus 176 ~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~~~~d~~~~~~~~~ 255 (523)
. ..+.+- +.-.. .++..| =++.+ + ..+
T Consensus 305 ------------~-----~~l~~~-L~lL~-~~~~~f------------------------v~~~g----~------~g~ 331 (534)
T 2xub_A 305 ------------K-----QVLDQY-LTLLA-DDPLEF------------------------VGKSG----D------SGG 331 (534)
T ss_dssp ------------H-----HHHHHH-HHHHH-SCTTCC------------------------EEECC----C------CSS
T ss_pred ------------H-----HHHHHH-HHHHh-CCcHHh------------------------hhccc----c------CCC
Confidence 0 000000 00000 000000 00000 0 023
Q ss_pred eEEEeehhhHHHHhchhHHHHHHHhhcCccHHHHHHHHHhccchhcccccccCCccccHHHHHHHhhhhccCCCCCHHHH
Q 009896 256 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHV 335 (523)
Q Consensus 256 ~~~rvN~e~f~~~lR~~~iv~~v~~r~~~~a~~v~~~~L~~~~~~~~~~~~~~s~~~s~~~I~~~l~~~~~~~~~~~~~i 335 (523)
-.|.|||.+....+|...+.+++.++||..|..|++.++.... ++-.+|.+... +....+
T Consensus 332 g~y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~RI~r~L~~~~~-------------l~d~~ia~~a~-------i~~k~v 391 (534)
T 2xub_A 332 GMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-------------IEQKQVEDFAM-------IPAKEA 391 (534)
T ss_dssp CEEEEBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC----------------CHHHHHHHHC-------SCHHHH
T ss_pred ceEEEeHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHcCC-------------CCHHHHHHHhC-------CCHHHH
Confidence 4699999999999999999999999999999999999998542 33345555442 445567
Q ss_pred HHHHHHhccCCCC---------CCCC----CeEEEehHHHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHh
Q 009896 336 RASLVQLGELSFV---------DASS----DSYSIDFEKIIEIAQNEEVESVVS--KRYGRDAYRIFRLLSK 392 (523)
Q Consensus 336 ~~~L~~La~~~~~---------~~~~----~~y~V~~~~i~~~lr~~~le~~v~--~~~G~~a~RI~r~L~~ 392 (523)
++.|-.|...+|+ +.++ =.|++|..++.+.+...+...+.. +|.-.+--..+++|-+
T Consensus 392 R~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~~~~~l~~~~~k~l~nl~~Rl~~E~~~~~~lL~k 463 (534)
T 2xub_A 392 KDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEK 463 (534)
T ss_dssp HHHHHHHHHTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777777632 1122 268999999988888777655433 4455555566666644
No 3
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=98.19 E-value=2.9e-06 Score=71.34 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEch
Q 009896 370 EVESVVSKRYGRDAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 448 (523)
Q Consensus 370 ~le~~v~~~~G~~a~RI~r~L~~k~-~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~ 448 (523)
.+.+++...+|....+|+..+...| .+ .+.+|++...++...+|+.|..|..+|+|..+..+.. ..++.+|+|.++.
T Consensus 7 ~~~~~~~~~~~~~~l~Il~~l~~~g~~~-s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~-~~g~~v~~~~~~~ 84 (110)
T 1q1h_A 7 LFINLAKSLLGDDVIDVLRILLDKGTEM-TDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDK-DSGWFIYYWKPNI 84 (110)
T ss_dssp HHHHHHHTTSCSTTHHHHHHHHHHCSCB-CHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC----CCCCEEEEECTH
T ss_pred HHHHHHHHHcChHHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccC-CCceEEEEeecCH
Confidence 5678899999999999999998888 76 9999999999999999999999999999987665322 3356778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009896 449 QILWKHVLDEMFHAALNLSLRVSYEL 474 (523)
Q Consensus 449 ~~~~~~~l~~~~k~~~nl~~R~~~e~ 474 (523)
+.+...+...+.+.+.++..|+++|+
T Consensus 85 ~~i~~~~~~~~~~~~e~l~~~l~~e~ 110 (110)
T 1q1h_A 85 DQINEILLNRKRLILDKLKTRLEYEK 110 (110)
T ss_dssp HHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99988888889999999999988874
No 4
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.66 E-value=0.0035 Score=52.12 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechh
Q 009896 8 KHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFD 86 (523)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~ 86 (523)
.....++...+|+..-.|...|+..| ++|..+|+..++++...|+.+|-.|...|+|......+.++.....+|.++.+
T Consensus 6 ~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~ 85 (110)
T 1q1h_A 6 DLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNID 85 (110)
T ss_dssp THHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHH
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHH
Confidence 44567889999999999999999888 99999999999999999999999999999998442221111112234577776
Q ss_pred hHHH
Q 009896 87 NILH 90 (523)
Q Consensus 87 ~il~ 90 (523)
.+..
T Consensus 86 ~i~~ 89 (110)
T 1q1h_A 86 QINE 89 (110)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 6543
No 5
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=96.23 E-value=0.051 Score=51.61 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccccccc-CCCCCCcceEEEechhhHHH--------
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE-QPDGPKANTQYVVLFDNILH-------- 90 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~-~~~~~~~~~~Y~~~~~~il~-------- 90 (523)
+.-..|...|. .|++|..+|++.++++.+.|.+-|-.|.+.|+|...... ..+| +...+|.++.+....
T Consensus 12 ~~R~~IL~~L~-~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~G-Rp~~~Y~Lt~~~~~~~~l~~~~~ 89 (232)
T 2qlz_A 12 KVRRDLLSHLT-CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIG-PTKKYYKISIAKSYVFTLTPEMF 89 (232)
T ss_dssp HHHHHHHHHHT-TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC------CEEEEEECCCEEEEEEEETTEE
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCC-CccEEEEEccchhhHHHHHHHHH
Confidence 55566777775 699999999999999999999999999999999842322 2222 235688865532110
Q ss_pred ----------Hh-----------chhhHHH---------------------HHHHH---------------hhH-HHHHH
Q 009896 91 ----------RV-----------RFAKFLT---------------------ILSQE---------------FDQ-QCVEL 112 (523)
Q Consensus 91 ----------rl-----------R~p~~i~---------------------~i~~~---------------~G~-~a~~I 112 (523)
.+ ..+.++. .+... .|+ +...+
T Consensus 90 w~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~~~~~ 169 (232)
T 2qlz_A 90 WYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMTQLAI 169 (232)
T ss_dssp EEEEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 00 0111211 11111 221 25677
Q ss_pred HHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceec
Q 009896 113 VQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 162 (523)
Q Consensus 113 ~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v 162 (523)
+..+|.+|-+|.+++-+.+.- +...+...+..|.+.|.|.+.
T Consensus 170 l~~~l~~~~~t~~~la~~~~l--------~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 170 LHYLLLNGRATVEELSDRLNL--------KEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHSSEEEHHHHHHHHTC--------CHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHhcCCCCHHHHHHHhCc--------CHHHHHHHHHHHHhcCCeEEe
Confidence 777889999999998877643 578899999999999999765
No 6
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.16 E-value=0.022 Score=44.45 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcc-cHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEch
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKK-DAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 448 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k-~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~ 448 (523)
-+|+.+|..+|.. ..++|++...|+.. .+|..||.|.++|+|.-+ ..+|. +|++..
T Consensus 14 ~~IL~~Lk~~g~~-ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~------~~gRP--~w~LT~ 70 (79)
T 1xmk_A 14 EKICDYLFNVSDS-SALNLAKNIGLTKARDINAVLIDMERQGDVYRQ------GTTPP--IWHLTD 70 (79)
T ss_dssp HHHHHHHHHTCCE-EHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE------CSSSC--EEEECH
T ss_pred HHHHHHHHHcCCc-CHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec------CCCCC--CeEeCH
Confidence 4788999899888 99999999999998 999999999999999733 12233 888763
No 7
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=94.92 E-value=0.46 Score=38.95 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=55.8
Q ss_pred HHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhH
Q 009896 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI 88 (523)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~i 88 (523)
...+++-.-.+.--.|..+| ..|+++..+|++.++++++.|...|-.|.+.|+|..... + ...+|.+.....
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~---g---r~~~y~l~~~~~ 82 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV---G---REIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE---T---TEEEEEECSHHH
T ss_pred HHHHHHHhCChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec---C---CEEEEEechHHH
Confidence 34445444446667788888 789999999999999999999999999999999973322 1 246888887764
No 8
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=94.79 E-value=0.18 Score=41.20 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+-...+++-.-.+.--+|...|. .|++++.+|++.++++.+.|...|-.|.+.|+|.... . | ...+|.++.+.
T Consensus 14 ~~~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~-~--g---r~~~y~l~~~~ 86 (106)
T 1r1u_A 14 ERVTEIFKALGDYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR-Q--G---QSMIYSLDDIH 86 (106)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-E--T---TEEEEEESSHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-e--C---CEEEEEEChHH
Confidence 33444555544466678888887 8899999999999999999999999999999998333 2 1 24789988776
Q ss_pred HHHHh
Q 009896 88 ILHRV 92 (523)
Q Consensus 88 il~rl 92 (523)
+...+
T Consensus 87 ~~~~~ 91 (106)
T 1r1u_A 87 VATML 91 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 9
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.19 E-value=0.22 Score=40.31 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=60.1
Q ss_pred HHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHH
Q 009896 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHR 91 (523)
Q Consensus 12 ~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~r 91 (523)
.+++-.=++.--.|...| ..|++|..+|.+.++++.+.|..-|-.|.+.|+|.. ... | ...+|+++.+.+
T Consensus 15 ~~~~~l~~~~r~~Il~~L-~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~-~~~--g---~~~~y~l~~~~~--- 84 (102)
T 3pqk_A 15 NLLKTLSHPVRLMLVCTL-VEGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVET-RRN--I---KQIFYRLTEAKA--- 84 (102)
T ss_dssp HHHHHHCSHHHHHHHHHH-HTCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEE-ECS--S---SCCEEEECSSTH---
T ss_pred HHHHHcCCHHHHHHHHHH-HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEe--C---CEEEEEECcHHH---
Confidence 344434446666777777 569999999999999999999999999999999983 222 1 246999988743
Q ss_pred hchhhHHHHHHHHhhH
Q 009896 92 VRFAKFLTILSQEFDQ 107 (523)
Q Consensus 92 lR~p~~i~~i~~~~G~ 107 (523)
..++..+.+.|+.
T Consensus 85 ---~~~~~~l~~~~~~ 97 (102)
T 3pqk_A 85 ---AQLVNALYTIFCA 97 (102)
T ss_dssp ---HHHHHHHHHHTGG
T ss_pred ---HHHHHHHHHHhcc
Confidence 3444555555543
No 10
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.91 E-value=0.14 Score=39.81 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechh
Q 009896 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFD 86 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~ 86 (523)
..|..+|...|++|..+|++.++++...|+..|-.|.+.|+|...... +| ...+|.++.+
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~--~g--r~~~y~l~~~ 62 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLR--RG--MATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCS--SS--SSCEEEESSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccC--CC--CcEEEEEChh
Confidence 467788888899999999999999999999999999999999732222 11 2357777654
No 11
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=93.67 E-value=0.22 Score=39.93 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHH
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILH 90 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~ 90 (523)
++.--.|...|.. |++|..+|++.++++.+.|..-|-.|.+.|+|...... ...+|+++.+.+-.
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g------~~~~y~l~~~~~~~ 86 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA------QTVYYTLKSEEVKA 86 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT------TCCEEEECCHHHHH
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC------CEEEEEECHHHHHH
Confidence 4555567777765 99999999999999999999999999999999733221 24699998875543
No 12
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.59 E-value=0.25 Score=41.67 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=47.9
Q ss_pred HHHHhhhc--hhHHHHHHHHHhcCC--CcHHHHHhhcCCCHHHHHHHHHHHHhhccccccc
Q 009896 12 HVITNHFG--DLVAKVCECLLRKGP--LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (523)
Q Consensus 12 ~iv~~~FG--~~v~~V~~~Ll~~G~--ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~ 68 (523)
.++...|| +.=..|..+|..+|. +|..+|+..++++.+.|...|-.|.+.|+|....
T Consensus 16 ~~l~~~~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 16 DVIKCALNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 34555555 666779999998876 9999999999999999999999999999998443
No 13
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.46 E-value=0.57 Score=37.68 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=48.2
Q ss_pred hchhHHHHHHHHHh-cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEech
Q 009896 18 FGDLVAKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLF 85 (523)
Q Consensus 18 FG~~v~~V~~~Ll~-~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~ 85 (523)
..+.-..+...|+. .|++|..+|++.++++...|...|-.|.+.|+|.....+.++..+....|.+..
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~ 87 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISS 87 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECT
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCH
Confidence 34555556666666 889999999999999999999999999999999843332221112245677765
No 14
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=93.40 E-value=0.082 Score=41.43 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=40.5
Q ss_pred HHHHHHHHhhC---CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 384 YRIFRLLSKSG---RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 384 ~RI~r~L~~k~---~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
-+|+.+|...+ .+ ...+|++...++...++..||+|.++|+|...
T Consensus 13 ~~IL~~L~~~~pg~~~-t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 13 QRILKFLEELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHCTTCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 35888888887 77 99999999999999999999999999999664
No 15
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=93.14 E-value=0.39 Score=38.21 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=52.7
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHH
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILH 90 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~ 90 (523)
.+.-..|...|...|++|..+|++.++++++.|...|-.|.+.|+|.... . + ...+|.++.+.+-.
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~-~--~---r~~~y~l~~~~~~~ 88 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQR-D--A---QRILYSIKNEAVNA 88 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE-C--S---SCEEEEECCHHHHH
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe-c--C---CEEEEEEChHHHHH
Confidence 35666788888777799999999999999999999999999999998332 2 1 24689988775443
No 16
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.10 E-value=0.89 Score=38.22 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCc--hHHHHHHHHhhCC--CcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEE
Q 009896 371 VESVVSKRYGRD--AYRIFRLLSKSGR--LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 446 (523)
Q Consensus 371 le~~v~~~~G~~--a~RI~r~L~~k~~--l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v 446 (523)
++.++...||-. -.+|+.+|...+. + ...+|++...++...+...|..|.+.|||.-...+.. .....|.|..
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~~~~-t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d--~~~~~~~y~~ 90 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPDRWI-DTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLD--GGGYVYIYKI 90 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTTCCE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECT--TSCEEEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccC--CCcceEEEec
Confidence 455565555544 4578999987776 7 9999999999999999999999999999977655543 2334566655
Q ss_pred -chH
Q 009896 447 -NRQ 449 (523)
Q Consensus 447 -~~~ 449 (523)
+.+
T Consensus 91 ~~~~ 94 (123)
T 3r0a_A 91 YSKN 94 (123)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 444
No 17
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=93.00 E-value=1.4 Score=39.08 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=95.0
Q ss_pred hchhHHHHHHHHHhc-------CCCcHHHHHhhc----------CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceE
Q 009896 18 FGDLVAKVCECLLRK-------GPLTRQNVKRYT----------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQ 80 (523)
Q Consensus 18 FG~~v~~V~~~Ll~~-------G~ltl~~l~~~t----------~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~ 80 (523)
+-+.-++|..||+.+ -++||..|...+ +++...|..+|=.|.+.++|... . | .+ +..
T Consensus 22 Ls~~EaRVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnRePVm~l~e~eV~~aLd~L~~~~Lv~~~--~--g-sR-v~K 95 (183)
T 2nr3_A 22 LNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLV--M--G-SR-ADR 95 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEE--C--C-SS-CCE
T ss_pred CCHHHHHHHHHhhhhcccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeeec--c--C-Cc-hHH
Confidence 556678899999865 588999997664 37889999999999999999622 2 1 12 578
Q ss_pred EEechhhHHHHhchhhHHHHHHHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccce
Q 009896 81 YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVE 160 (523)
Q Consensus 81 Y~~~~~~il~rlR~p~~i~~i~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~ 160 (523)
|+=+..+ .-.+......|+-.||..|--|+.++..+..- . -+..+.++++..+..|+...++.
T Consensus 96 y~Hr~~~--------------~l~l~~~e~All~~LlLRGpQT~gELRtRs~R-l--~~F~d~~~Ve~~L~~L~~r~lV~ 158 (183)
T 2nr3_A 96 WEHKVDK--------------GLELVPAQVILTGLLLLRGPQTVSELLTRSNR-M--HDFEDSEQVVHQLERLIARGLAT 158 (183)
T ss_dssp EEECHHH--------------HHTCCHHHHHHHHHHHHHCSEEHHHHHHHTTT-T--SCCSSHHHHHHHHHHHHHTTSEE
T ss_pred HHhhhhh--------------hcCCCHHHHHHHHHHHhcCCCChHHHHHhhhc-C--CcCCCHHHHHHHHHHHhhCcHHH
Confidence 8866654 12345678889999999999999999877432 1 12447889999999999999998
Q ss_pred ecC
Q 009896 161 RCP 163 (523)
Q Consensus 161 ~v~ 163 (523)
+.|
T Consensus 159 ~Lp 161 (183)
T 2nr3_A 159 LVP 161 (183)
T ss_dssp EEC
T ss_pred hcC
Confidence 886
No 18
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=92.80 E-value=0.5 Score=39.69 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhc
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVR 93 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR 93 (523)
.+.--+|...|...|++|+.+|.+.++++.+.|..-|-.|.+.|+|.. ... | ...+|.++.+.+...+.
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~-~~~--g---r~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNF-RKE--G---KLALYSLGDEHIRQIMM 109 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-C---------CCEEEESCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEE--C---CEEEEEECHHHHHHHHH
Confidence 344457888887789999999999999999999999999999999983 322 1 24699998876655443
No 19
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.72 E-value=0.47 Score=38.95 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=55.8
Q ss_pred HHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHH
Q 009896 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNIL 89 (523)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il 89 (523)
...+++-.-.+.--+|...|. .|++|+.+|++.++++++.|...|-.|.+.|+|..... | ...+|.++.+.+.
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~---g---r~~~y~l~~~~~~ 87 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA-QGERAVEAIATATGMNLTTASANLQALKSGGLVEARRE---G---TRQYYRIAGEDVA 87 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE---T---TEEEEEESCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe---C---CEEEEEEChHHHH
Confidence 344554444566667888775 69999999999999999999999999999999983332 1 2468998877643
No 20
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.72 E-value=0.95 Score=38.55 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=46.3
Q ss_pred CchHHHHHHHH-hhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEE
Q 009896 381 RDAYRIFRLLS-KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWK 445 (523)
Q Consensus 381 ~~a~RI~r~L~-~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~ 445 (523)
..-.+++.+|. .++.+ ...+|++...++...+...+.+|.+.|||.-..-| ...|.+|+.-
T Consensus 26 ~~~~~il~~L~~~~~~~-t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~---~d~r~~~~~~ 87 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPL-TISDIMEELKISKGNVSMSLKKLEELGFVRKVWIK---GERKNYYEAV 87 (152)
T ss_dssp HHHHHHHHHHHHCSSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT---TCSSCEEEEC
T ss_pred hhHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC---CCceEEEeec
Confidence 45567888885 45676 99999999999999999999999999999532222 2345555554
No 21
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.52 E-value=0.062 Score=42.09 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=39.4
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
+.+|+.+|...| + .-.+|++...++...+|..||+|.++|+|.-
T Consensus 19 ~~~IL~lL~~~g-~-sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 19 VCEAIKTIGIEG-A-TAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHSSST-E-EHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHHHcC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 467888887665 5 9999999999999999999999999999955
No 22
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=91.98 E-value=1.5 Score=37.92 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhchhhHHHHHH
Q 009896 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILS 102 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p~~i~~i~ 102 (523)
.+|.++|. .|+.|..+|++.+|++.++++..|.+|-.-|+|.-+.-. ..++.-++.+ .|++.|
T Consensus 14 ~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~G------K~ayw~L~~s---------~y~~kV- 76 (165)
T 2vxz_A 14 RDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFG------NVALVCLSMD---------QYRQLV- 76 (165)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEET------TEEEEESCHH---------HHHHHH-
T ss_pred HHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEc------cEEEEEecHH---------HHHHHH-
Confidence 46778888 999999999999999999999999999999999844442 2345555443 333322
Q ss_pred HHhhHHHHHHHHHHHHcCc--CCHHHHHHHhhhc
Q 009896 103 QEFDQQCVELVQGLLEHGR--LTLKQMFDRAKSS 134 (523)
Q Consensus 103 ~~~G~~a~~I~~~lL~~G~--~~~~~li~~~~~~ 134 (523)
++.-.++-..|-.+|. ++++++..-+..+
T Consensus 77 ---~dilrel~~~l~s~gvk~i~p~~l~~li~~d 107 (165)
T 2vxz_A 77 ---DGMIREVERLVTTNKLKFISPPRLHDLIIKD 107 (165)
T ss_dssp ---HHHHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHcCCeeeCcHHHHHHHHhC
Confidence 2233444444445554 5678887776654
No 23
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.87 E-value=0.9 Score=36.38 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=51.0
Q ss_pred HcC--CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEE
Q 009896 378 RYG--RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 446 (523)
Q Consensus 378 ~~G--~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v 446 (523)
.+| ..-.+|+.+|...+.+ ...+|++...++...+...|.+|.+.|+|.-...| . .+..|++..
T Consensus 15 ~~~l~~~~~~il~~l~~~~~~-s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~-~---~r~~~~~~t 80 (109)
T 1sfx_A 15 KLSFKPSDVRIYSLLLERGGM-RVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE-K---GWVGYIYSA 80 (109)
T ss_dssp HTCCCHHHHHHHHHHHHHCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE-S---SSEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec-C---CceEEEEec
Confidence 445 3456789999877887 99999999999999999999999999999876665 2 444455444
No 24
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=91.85 E-value=0.9 Score=50.63 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=87.7
Q ss_pred cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccccccc----CCCCCCcceEEEechh--hHHHHhchhhH--------
Q 009896 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE----QPDGPKANTQYVVLFD--NILHRVRFAKF-------- 97 (523)
Q Consensus 32 ~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~----~~~~~~~~~~Y~~~~~--~il~rlR~p~~-------- 97 (523)
.+.+|+.+|...|+++...++.+|..|++++++. ..++ .++.......|.+|.+ .-..+++.|..
T Consensus 601 ~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~-~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e 679 (760)
T 1ldj_A 601 EDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLV-LEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQE 679 (760)
T ss_dssp SSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEE-CSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcce-eCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchh
Confidence 4678999999999999999999999999999886 3321 1111112357777765 22333333211
Q ss_pred ----HHHHH-HHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 98 ----LTILS-QEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 98 ----i~~i~-~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
-..|. .+--..-|.||..+=....++-.+|+..+.+....-=..+...|+..+..|++.+||+|.+
T Consensus 680 ~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~ 750 (760)
T 1ldj_A 680 QETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 750 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred hhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCC
Confidence 01111 1111345777888888899998999887765321101236788999999999999999985
No 25
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.84 E-value=0.14 Score=39.55 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=40.8
Q ss_pred HHHHHHHHhhC---CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 384 YRIFRLLSKSG---RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 384 ~RI~r~L~~k~---~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.+|+.+|...+ .+ ..++||+...++...++..||+|.++|+|.-+
T Consensus 17 ~~IL~~L~~~~~~~~~-t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSSSCE-EHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 56888898888 77 99999999999999999999999999999654
No 26
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.71 E-value=0.79 Score=36.72 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=45.7
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccc
Q 009896 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69 (523)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~ 69 (523)
+.+.-..|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.....
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 3466678899998899999999999999999999999999999999984333
No 27
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=91.59 E-value=3.4 Score=36.68 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=94.3
Q ss_pred hchhHHHHHHHHHhc-------CCCcHHHHHhhc----------CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceE
Q 009896 18 FGDLVAKVCECLLRK-------GPLTRQNVKRYT----------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQ 80 (523)
Q Consensus 18 FG~~v~~V~~~Ll~~-------G~ltl~~l~~~t----------~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~ 80 (523)
+-+.-++|..||+.+ -++||..|...+ +++...|..+|=.|...++|. ... | .+ +..
T Consensus 22 Ls~~E~RVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnR~PVm~l~e~eV~~ald~L~~~~lv~--~~~--g-sR-v~K 95 (183)
T 3bz6_A 22 LNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTR--LVM--G-SR-ADR 95 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEE--EEC--C-SS-CCE
T ss_pred CCHHHHHHHHhhhhhcccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeE--eec--C-Cc-cHH
Confidence 445677888888865 588999997664 378899999999999999996 222 2 22 578
Q ss_pred EEechhhHHHHhchhhHHHHHHHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccce
Q 009896 81 YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVE 160 (523)
Q Consensus 81 Y~~~~~~il~rlR~p~~i~~i~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~ 160 (523)
|+=+..+. -.+......|+-.||..|--|+.++-.+..- + -...+.++++..+..|+...++.
T Consensus 96 y~Hr~~~~--------------l~l~~~e~All~~LlLRGpQT~GELRtRs~R-l--~~F~d~~~Ve~~L~~L~~r~lv~ 158 (183)
T 3bz6_A 96 WEHKVDKG--------------LELVPAQVILTGLLLLRGPQTVSELLTRSNR-M--HDFEDSEQVVHQLERLIARGLAT 158 (183)
T ss_dssp EEECHHHH--------------HTCCHHHHHHHHHHHHHCSBCHHHHHHHHTT-T--SCCSSHHHHHHHHHHHHHHTSEE
T ss_pred HHcccchh--------------cCCCHHHHHHHHHHHhcCCCChhHHHHhHhh-c--cccCCHHHHHHHHHHHhcCCcee
Confidence 88766552 1344677889999999999999999877542 1 12446889999999999999998
Q ss_pred ecC
Q 009896 161 RCP 163 (523)
Q Consensus 161 ~v~ 163 (523)
.+|
T Consensus 159 ~Lp 161 (183)
T 3bz6_A 159 LVP 161 (183)
T ss_dssp EEC
T ss_pred ecC
Confidence 886
No 28
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.52 E-value=0.33 Score=40.62 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHH
Q 009896 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILH 90 (523)
Q Consensus 13 iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~ 90 (523)
+++-.-.+.--+|...|. .|+.+..+|.+.++++.+.|..-|-.|...|+|...... ...+|+++.+.+..
T Consensus 14 ~~~aL~~~~r~~IL~~L~-~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g------r~~~y~l~~~~~~~ 84 (118)
T 2jsc_A 14 LGRALADPTRCRILVALL-DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG------RQVRYALADSHLAR 84 (118)
T ss_dssp HHHHHSSHHHHHHHHHHH-TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS------SSEEEEESSHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC------CEEEEEEChHHHHH
Confidence 333333455667888776 788999999999999999999999999999999733221 24689998765433
No 29
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.50 E-value=0.43 Score=36.80 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcC---CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 22 VAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 22 v~~V~~~Ll~~G---~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
-.+|..+|...| +.|..+|++..+++.+.|..-|-.|.+-|+|.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 377889999999 99999999999999999999999999999997
No 30
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=91.43 E-value=1.2 Score=37.35 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHH
Q 009896 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNIL 89 (523)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il 89 (523)
...+++-.-.+.--+|...|. .|+.++.+|++.++++.+.|...|-.|.+.|+|. .... | ...+|+++.+.+.
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~-~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~-~~~~--g---r~~~y~l~~~~l~ 108 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVS-YRKQ--G---RHVYYQLQDHHIV 108 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EEEE--T---TEEEEEESSHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE-EEEe--C---CEEEEEEChHHHH
Confidence 344444433444557777775 6899999999999999999999999999999998 3332 1 2468999887654
Q ss_pred HH
Q 009896 90 HR 91 (523)
Q Consensus 90 ~r 91 (523)
..
T Consensus 109 ~~ 110 (122)
T 1r1t_A 109 AL 110 (122)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 31
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=91.32 E-value=1.3 Score=36.59 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEE
Q 009896 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYV 82 (523)
Q Consensus 3 ~~~~~~Lc~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~ 82 (523)
+.....-...+++-.-.+.--.|...|.. |..++.+|++.++++.+.|...|-.|.+.|+|. +.... ...+|+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~-~~~~~-----r~~~~~ 87 (119)
T 2lkp_A 15 DSQAAAQVASTLQALATPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV-GDRAG-----RSIVYS 87 (119)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE-EEEET-----TEEEEE
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-EEecC-----CEEEEE
Confidence 33444444455544444555678888876 889999999999999999999999999999997 43321 246888
Q ss_pred echhhH
Q 009896 83 VLFDNI 88 (523)
Q Consensus 83 ~~~~~i 88 (523)
+....+
T Consensus 88 ~~~~~~ 93 (119)
T 2lkp_A 88 LYDTHV 93 (119)
T ss_dssp ESCHHH
T ss_pred EchHHH
Confidence 875543
No 32
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=91.20 E-value=3.8 Score=34.32 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=55.9
Q ss_pred HHHHHhhhc--hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhH
Q 009896 11 VHVITNHFG--DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI 88 (523)
Q Consensus 11 ~~iv~~~FG--~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~i 88 (523)
...+...|| +.--.|...|..+|++|..+|++.+++++..|...|-.|.+.|+|.-...+.+ +...+|.+...+.
T Consensus 20 ~~~~~~~~~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d---~r~~~~~lT~~G~ 96 (142)
T 3bdd_A 20 SNLFEKQLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDN---QREVLVWPTEQAR 96 (142)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSS---TTCEEEEECHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCC---CCeeEEEECHHHH
Confidence 344445545 44556888888889999999999999999999999999999999984433322 2245777766553
No 33
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=91.10 E-value=0.79 Score=36.87 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVR 93 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR 93 (523)
+.--+|...|+.+|+++..+|++.++++.+.|..-|-.|.+. +|.. ... | ...+|.++.+.+-..+.
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~-~~~--g---r~~~y~l~~~~~~~~~~ 93 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKR-NRQ--G---LEIYYSINNPKVEGIIK 93 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEE-EEE--T---TEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhh-eEe--C---cEEEEEEChHHHHHHHH
Confidence 555678888889999999999999999999999999999999 8873 332 1 24799998887655443
No 34
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=90.96 E-value=1.2 Score=35.16 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhH
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI 88 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~i 88 (523)
++.--.|...|..+|++|..+|++.++++.+.|...|-.|.+.|+|.....+. + +...+|.+...+.
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~-~--~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIA-D--RPRTVVEITDFGM 81 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECS-S--SCEEEEEECHHHH
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC-C--cceEEEEECHHHH
Confidence 34556788888888999999999999999999999999999999998333221 1 2357898877763
No 35
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=90.81 E-value=0.27 Score=38.22 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHH-HHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDE-QVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~-~vr~aL~vLiQhn~V~ 65 (523)
+.-.+|..+|..+|++|..+|++..++++. .|+..|..|-.-|+|.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 456889999999999999999999999998 9999999999999997
No 36
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=90.80 E-value=0.42 Score=35.65 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=43.9
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCC-cccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVE-KKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 446 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~-~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v 446 (523)
-+|+++|..+|.- .-=.|++...|. +||+-..||.|.+.|.+.+ +.. .+.+.+|-|.+
T Consensus 13 e~I~~fL~~~Gp~-~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~---Dek-~~~W~iy~~~~ 71 (72)
T 3eyi_A 13 EDIYRFLKDNGPQ-RALVIAQALGMRTAKDVNRDLYRMKSRHLLDM---DEQ-SKAWTIYRWTI 71 (72)
T ss_dssp HHHHHHHHHHCSE-EHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEE---CTT-TCEEEEC----
T ss_pred HHHHHHHHHcCCc-hHHHHHHHhCcchhhhcCHHHHHHHHccCcCC---CCC-CCceeEEEeee
Confidence 4799999988877 777888877765 7899999999999999965 221 67788998875
No 37
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=90.41 E-value=1.2 Score=37.10 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=54.7
Q ss_pred HHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHH
Q 009896 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILH 90 (523)
Q Consensus 13 iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~ 90 (523)
+++-.=.+.--+|...|. .|+++..+|++.++++.+.|..-|-.|...|+|...... ...+|+++.+.+-.
T Consensus 11 ~~~al~~~~R~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g------r~~~y~l~~~~~~~ 81 (118)
T 3f6o_A 11 IFQALADPTRRAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG------RVRTCAIEKEPFTA 81 (118)
T ss_dssp HHHHHTSHHHHHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET------TEEEEEECSHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC------CEEEEEECHHHHHH
Confidence 333333466677777776 799999999999999999999999999999999833221 24799998876543
No 38
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=90.02 E-value=0.61 Score=36.01 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEe
Q 009896 20 DLVAKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVV 83 (523)
Q Consensus 20 ~~v~~V~~~Ll~~--G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~ 83 (523)
+-=..|..+|... |++|..+|.... +++...|...|-.|.+.|+|.-...++ ...+|++
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~-----~~~~y~~ 82 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG-----GKSVFEL 82 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGG-----GCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCC-----CceEeec
Confidence 3445688888876 689999999988 899999999999999999998333321 2367875
No 39
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=89.90 E-value=0.29 Score=37.44 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
-+|+..|.+.|+-+...+|++.+.++.|++-+.|++|-++|.|..
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccC
Confidence 378889999898889999999999999999999999999999843
No 40
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=89.81 E-value=4.6 Score=34.69 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=63.0
Q ss_pred cCCchHHHHHHH-HhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHHHHHHHHH
Q 009896 379 YGRDAYRIFRLL-SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLD 457 (523)
Q Consensus 379 ~G~~a~RI~r~L-~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~~~~~~l~ 457 (523)
+...-++|+.+| ...+.+ ...+|++...++...+-..+.+|.+.|||.-+.-|. ..|..++ ++... -..+++
T Consensus 45 l~~~~~~iL~~L~~~~~~~-~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~---d~R~~~~-~lT~~--G~~~~~ 117 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGL-SMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSAD---DRRSFSA-KLTDA--GLTTFK 117 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCE-EHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-----------CEE-EECHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCC-CHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCC---CCCeEEE-EEChh--HHHHHH
Confidence 334456788888 455666 999999999999999999999999999996543332 2444443 34422 223334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHhhh
Q 009896 458 EMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKL 513 (523)
Q Consensus 458 ~~~k~~~nl~~R~~~e~~~~k~ll~k~~~~~~~~e~~~l~~~~~~~~~L~~~~~rl 513 (523)
.+......... .++. ..+++|.+.+.++-..........+++
T Consensus 118 ~~~~~~~~~~~----------~~~~----~l~~~e~~~l~~~l~~l~~~l~~~~~~ 159 (160)
T 3boq_A 118 QASEAHNRILA----------ELLR----AVSDQDMVEASAALRGILESMQTGASL 159 (160)
T ss_dssp HHHHHHHHHHH----------HHTT----TCCHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHH----------HHHh----cCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 43333322221 1221 234667766666555554444444443
No 41
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=88.87 E-value=0.58 Score=36.31 Aligned_cols=55 Identities=22% Similarity=0.173 Sum_probs=49.8
Q ss_pred HhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccccccc
Q 009896 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70 (523)
Q Consensus 15 ~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~ 70 (523)
++.-|..++.|-+.|...|.+|+.+|.+.++++...+-.|+==|..-|=|. +...
T Consensus 3 k~~IG~nAG~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~-~~~~ 57 (82)
T 2l02_A 3 KKIVGANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV-IERK 57 (82)
T ss_dssp HHHHHHHHHHHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEE-EEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCcee-EEee
Confidence 356799999999999999999999999999999999999999999999887 5543
No 42
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=88.82 E-value=0.17 Score=38.77 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=32.0
Q ss_pred CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 394 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 394 ~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
|..+...+||+.-.++.+++.+.||+|++.|+|..+
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 453488999999999999999999999999999764
No 43
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=88.77 E-value=1.5 Score=38.82 Aligned_cols=139 Identities=12% Similarity=0.171 Sum_probs=94.5
Q ss_pred HHHHHHHhccchhcccccccCCccccHHHHHHHhhhhccCCCCCHHHHHHHHHHhccC-----C-C-CCCCCCeEEEehH
Q 009896 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGEL-----S-F-VDASSDSYSIDFE 360 (523)
Q Consensus 288 ~v~~~~L~~~~~~~~~~~~~~s~~~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~~-----~-~-~~~~~~~y~V~~~ 360 (523)
.+++|+|-.+ ..|+|..+|.+.+. ...+.+.+...|..|..+ . + .-.-+|.|.+-.+
T Consensus 10 ~~iEAlLf~~-----------~~pvs~~~La~~~~-----~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~ 73 (162)
T 1t6s_A 10 RSLEALIFSS-----------EEPVNLQTLSQITA-----HKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTE 73 (162)
T ss_dssp HHHHHHHHHC-----------SSCBCHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHc-----------CCCCCHHHHHHHhC-----cCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEc
Confidence 4577777764 24799999988874 124455677777766542 2 1 1233466766554
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceE
Q 009896 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ 440 (523)
Q Consensus 361 ~i~~~lr~~~le~~v~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t 440 (523)
.-..-.-...+..--..++...++.++.++.-++-+ .--+|++.-.++ +..++..|...|+|. |+++...|+|
T Consensus 74 ~~~~~~v~~~~~~~~~~~LS~aaLEtLaiIay~qPi-TR~eI~~irGv~---~~~~v~~L~e~glI~--e~g~~~~~GR- 146 (162)
T 1t6s_A 74 PEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPV-TKGEIQQIRGAS---PDYSIDRLLARGLIE--VRGRADSPGR- 146 (162)
T ss_dssp GGGHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSE-EHHHHHHHHTCC---CCSHHHHHHHTTSEE--EEEECSSTTC-
T ss_pred HHHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCc-CHHHHHHHHCCC---HHHHHHHHHHCCCEE--EccccCCCCC-
Confidence 444333333333333457888889999999888666 999999999998 778999999999994 4666546888
Q ss_pred EEEEEEchH
Q 009896 441 FLLWKVNRQ 449 (523)
Q Consensus 441 ~~lw~v~~~ 449 (523)
-++|.++..
T Consensus 147 p~ly~tT~~ 155 (162)
T 1t6s_A 147 PLQYGTTEV 155 (162)
T ss_dssp CEEEEECHH
T ss_pred CeEEEECHH
Confidence 677777754
No 44
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.51 E-value=0.7 Score=36.10 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~ 66 (523)
+++.+|...|...| .|..+|.+..+++...|++-|-.|.+-|+|.+
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 56788888888777 99999999999999999999999999999984
No 45
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=88.32 E-value=1.2 Score=39.03 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHH
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILH 90 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~ 90 (523)
.+.--+|...|. .|++|..+|+..++++...|..-|-+|...|+|.. ... | ...+|.++...+-.
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~-~~~--G---r~~~y~lt~~~~~~ 121 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTP-RKD--G---RFRYYRLDPQGLAQ 121 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEE-EEE--T---TEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-Eec--C---CEEEEEEChHHHHH
Confidence 355667777776 89999999999999999999999999999999983 322 1 24799998776443
No 46
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=88.12 E-value=2 Score=36.42 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.=-.|..+|..+| +|..+|++.+++++..|...|-.|.+.|+|.-...+.+ +...+|.+...+
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d---~R~~~~~lT~~g 101 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKD---ARVIFYQLTDLA 101 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------------CCEECGGG
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCC---CceeEEEECHhH
Confidence 33456778888888 99999999999999999999999999999984333322 123456665544
No 47
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=87.71 E-value=1.4 Score=40.52 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHH
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHR 91 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~r 91 (523)
++.--.|...| ..|+++..+|.+.++++.+.|...|-.|...|+|.....+.++| +...+|+++.+.....
T Consensus 14 ~~~rl~IL~~L-~~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g-~~~~~Y~Lt~~~~~~l 84 (202)
T 2p4w_A 14 NETRRRILFLL-TKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRG-RPRKYYMIKKGLRLEI 84 (202)
T ss_dssp SHHHHHHHHHH-HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTB-CCCEEEEECTTEEEEE
T ss_pred CHHHHHHHHHH-HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCC-CceEEEEEChHHHHHH
Confidence 45666777777 68999999999999999999999999999999998443322222 2356888877655433
No 48
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=87.67 E-value=8.5 Score=31.33 Aligned_cols=68 Identities=9% Similarity=0.143 Sum_probs=51.5
Q ss_pred hhhc-hhHHHHHHHHHhcCCCcHHHHHhhc-CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 16 NHFG-DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 16 ~~FG-~~v~~V~~~Ll~~G~ltl~~l~~~t-~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.+| +..-.|...|. .|+++..+|.+.. +++.+.|-..|-.|.+.|+|.-...+. + +...+|.+-..+
T Consensus 17 ~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~-d--~r~~~~~LT~~G 86 (112)
T 1z7u_A 17 STINGKWKLSLMDELF-QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNE-L--PPRVEYTLTPEG 86 (112)
T ss_dssp HTTCSTTHHHHHHHHH-HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECC-S--SCEEEEEECHHH
T ss_pred HHHcCccHHHHHHHHH-hCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCC-C--CCeEEEEECHhH
Confidence 3444 44456777776 5999999999999 999999999999999999998433322 1 235688887664
No 49
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.53 E-value=9.4 Score=32.06 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=46.7
Q ss_pred HHHHHHHHh-cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 23 AKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 23 ~~V~~~Ll~-~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
-.|..+|.. .|++|..+|+..++++...|...|-.|.+.|+|.-...+.+ +...+|.+...+
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d---~R~~~~~lT~~G 100 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQD---GRRTRVSLSSEG 100 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC---------CCEEEECHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCC---CCceeeEECHHH
Confidence 457778888 89999999999999999999999999999999983333222 123466666554
No 50
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=87.48 E-value=4.6 Score=34.03 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=43.0
Q ss_pred hchhHHHHHHHHH-hcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 18 FGDLVAKVCECLL-RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 18 FG~~v~~V~~~Ll-~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
+.+....|..+|. ..|++|..+|++.++++++.|...|-.|.+.|+|...
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3356667777775 5799999999999999999999999999999999833
No 51
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=87.37 E-value=1.6 Score=34.93 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=45.8
Q ss_pred CchHHHHHHHHh-hCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEch
Q 009896 381 RDAYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 448 (523)
Q Consensus 381 ~~a~RI~r~L~~-k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~ 448 (523)
..-.+++..+.. ++.+ ...+|++...++...+...|..|.+.|||.-...+.. ..++..++|.+..
T Consensus 21 ~~~~~~l~~l~~~~~~~-t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~-~~gr~~~~~~l~~ 87 (109)
T 2d1h_A 21 DTDVAVLLKMVEIEKPI-TSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK-KIGRPKYYYSISS 87 (109)
T ss_dssp HHHHHHHHHHHHHCSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--------CCEEEEECT
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC-CCCCCCeeeecCH
Confidence 334455555555 5666 9999999999999999999999999999976544332 3334455666665
No 52
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=87.18 E-value=0.91 Score=48.94 Aligned_cols=123 Identities=19% Similarity=0.100 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHh-----hcccccccccCCCCCCcceEEEechhhHHHHhch--
Q 009896 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ-----QNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRF-- 94 (523)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQ-----hn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~-- 94 (523)
-..|..+|..++.+|..+|...++++...++..|-.|.+ .+++... | ..|.++.. ++..+.-
T Consensus 432 ~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~-----g-----~~y~L~~~-~~~~~~~~~ 500 (583)
T 3lmm_A 432 IAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH-----D-----GVWLLGNA-CREILRKVE 500 (583)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE-----T-----TEEEECHH-HHHHHTSCC
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe-----C-----CEEEECHH-HHHHhcccc
Confidence 357888999999999999999999999999999999999 7788621 1 26887654 4444432
Q ss_pred --hhH-HHHHHHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 95 --AKF-LTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 95 --p~~-i~~i~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
+.| +......--..-..|++.|-.+|.++..|+.+.+.- +..++...+.+|+..|.|++..
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~I~~~l~~~g~it~~di~~l~~l--------s~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 501 PSPFSPVRYLSTDQAELTNAAMLWLSEVGDLATSDLMAMCGV--------SRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccccccccCChhHHHHHHHHHHHHcCCcCHHHHHHHHCC--------CHHHHHHHHHHHHHCCcEEEeC
Confidence 233 111111110112456777778999999999876532 4556799999999999997763
No 53
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.16 E-value=1.1 Score=34.65 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
..|-+.|-.+|..++.+|++..++++..||.-|-.|.+.|.|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4678899999999999999999999999999999999999997
No 54
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=86.90 E-value=0.68 Score=33.16 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 385 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 385 RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.|+..++.+|..++-+.+++.-.++..++-..|.+|.+.|+|.+.
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 466777888888899999999999999999999999999999874
No 55
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=86.87 E-value=0.69 Score=35.40 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=50.3
Q ss_pred HhhhchhHHHHHHHHHhcCCCcHHHHHhhcCC-CHHHHHHHHHHHHhhccccccccc
Q 009896 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTEL-SDEQVKNALLVLIQQNCVQAFTTE 70 (523)
Q Consensus 15 ~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l-~~~~vr~aL~vLiQhn~V~~~~~~ 70 (523)
.+.-|..++.|-+.|...|.+|+.+|.+.+++ +...+-.|+==|..-|=|. |...
T Consensus 5 k~~IG~nAG~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~-~~~~ 60 (77)
T 2l01_A 5 KEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV-TSEV 60 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEE-EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceE-EEee
Confidence 56789999999999999999999999999999 9999999999999999887 5544
No 56
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=86.82 E-value=1.1 Score=34.89 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcC---CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 21 LVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 21 ~v~~V~~~Ll~~G---~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.-.+|...|...| ++|..+|++..+++.+.|+..|-.|..-|+|.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3467888999999 99999999999999999999999999999997
No 57
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=86.81 E-value=7.8 Score=32.13 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=44.1
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
..-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-..-|
T Consensus 29 ~~~~~iL~~l~~~~~~-~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 29 DAQVACLLRIHREPGI-KQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp HHHHHHHHHHHHSTTC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 4457888888887777 99999999999999999999999999999765433
No 58
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=86.73 E-value=3.1 Score=35.58 Aligned_cols=66 Identities=9% Similarity=-0.066 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhH
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI 88 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~i 88 (523)
+.--.|..+|..+|++|..+|++.++++...|...|-.|.+.|+|.-...+.+ +...+|.+...+.
T Consensus 47 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d---~R~~~~~lT~~G~ 112 (153)
T 2pex_A 47 YPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASD---ERQVIIALTETGR 112 (153)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----------CEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCccc---CCeeEeeECHHHH
Confidence 33456778888889999999999999999999999999999999983333221 2234666655543
No 59
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=86.60 E-value=0.57 Score=36.17 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+|+.+|...+.+ ...+|++...++...++..|..|.+.|+|.-
T Consensus 3 ~~Il~~L~~~~~~-s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGG-KTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3688888777777 9999999999999999999999999999954
No 60
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.39 E-value=1.6 Score=34.58 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFD 86 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~ 86 (523)
.+.-..|...| .|+++..+|++.++++...|...|-.|.+.|+|.. .. + +|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~-~~---g------~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIER-VG---E------RWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ET---T------EEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-EC---C------EEEECCC
Confidence 34555677777 78999999999999999999999999999999972 21 1 7777665
No 61
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=86.07 E-value=4.6 Score=32.66 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=51.3
Q ss_pred hhhc-hhHHHHHHHHHhcCCCcHHHHHhhc-CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 16 NHFG-DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 16 ~~FG-~~v~~V~~~Ll~~G~ltl~~l~~~t-~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.+| +..-.|...|. .|++++.+|.+.. +++++.+-..|-.|.+.|+|.-...+. + +...+|++...+
T Consensus 9 ~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~-d--~r~~~y~LT~~G 78 (107)
T 2hzt_A 9 EVIGGKWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQ-V--PPKVEYELSEYG 78 (107)
T ss_dssp HHHCSTTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECS-S--SCEEEEEECTTG
T ss_pred HHHcCccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCC-C--CCeEEEEECccH
Confidence 3344 34446777775 8999999999999 999999999999999999998433322 1 234688887664
No 62
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=86.04 E-value=6.1 Score=33.66 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=45.2
Q ss_pred HcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE
Q 009896 378 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 431 (523)
Q Consensus 378 ~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEv 431 (523)
-+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-..-
T Consensus 34 ~l~~~~~~iL~~l~~~~~~-t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~ 86 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSL-KVSEIAERMEVKPSAVTLMADRLEQKNLIARTHN 86 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCC
Confidence 3445567889999877777 9999999999999999999999999999976543
No 63
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=86.02 E-value=11 Score=31.92 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=43.5
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-.
T Consensus 38 lt~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGA-TAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 334567888888777777 99999999999999999999999999999664
No 64
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=86.01 E-value=6.7 Score=31.64 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=46.7
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchH
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 449 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~ 449 (523)
.-.+|+.+| .+|.+ ...+|++...++...+...|..|.+.|+|.-..- ++ ...|++...
T Consensus 22 ~r~~IL~~L-~~~~~-~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~------gr-~~~y~l~~~ 80 (114)
T 2oqg_A 22 TRWEILTEL-GRADQ-SASSLATRLPVSRQAIAKHLNALQACGLVESVKV------GR-EIRYRALGA 80 (114)
T ss_dssp HHHHHHHHH-HHSCB-CHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEECSH
T ss_pred HHHHHHHHH-HcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec------CC-EEEEEechH
Confidence 346799988 67787 9999999999999999999999999999965432 22 344566654
No 65
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=85.83 E-value=5.3 Score=33.25 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.+.--.|..+|..+|++|..+|++..++++..|...|-.|.+.|+|.-...+.+ +...+|.+...+
T Consensus 37 ~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d---~R~~~~~lT~~G 102 (140)
T 2nnn_A 37 TPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDD---GRRLLVSLSPAG 102 (140)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTE---EEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCC---CCeeeeEECHhH
Confidence 344556888888899999999999999999999999999999999984333221 223466665554
No 66
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=85.82 E-value=2.5 Score=40.21 Aligned_cols=138 Identities=9% Similarity=0.117 Sum_probs=87.0
Q ss_pred hhhchhHH--HHHHHHHhc--CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEech------
Q 009896 16 NHFGDLVA--KVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLF------ 85 (523)
Q Consensus 16 ~~FG~~v~--~V~~~Ll~~--G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~------ 85 (523)
..||=..+ .|-.+|-.+ |++|..+|....++++..+-..|--|.+.|+|.-...+.+. +. ++-.+-.
T Consensus 28 ~~~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~Dr--R~-~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 28 PEVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDE--RN-TYISISEEQREKI 104 (250)
T ss_dssp TTCSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSST--TS-EEEECCHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCC--Ce-EEEEECHHHHHHH
Confidence 34554444 466777764 48999999999999999999999999999999833333221 11 1111111
Q ss_pred --------------------------hhHHHHhc----hhhHHHHHHHHhh--HHHHHHHHHHHHcC--cCCHHHHHHHh
Q 009896 86 --------------------------DNILHRVR----FAKFLTILSQEFD--QQCVELVQGLLEHG--RLTLKQMFDRA 131 (523)
Q Consensus 86 --------------------------~~il~rlR----~p~~i~~i~~~~G--~~a~~I~~~lL~~G--~~~~~~li~~~ 131 (523)
..+....+ .-++...+-..|| ..-..|+..|..+| .+++++|.+.+
T Consensus 105 ~~~~~~~~~~~eq~s~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l 184 (250)
T 1p4x_A 105 AERVTLFDQIIKQFNLADQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVEFTILAIITSQNKNIVLLKDLIETI 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 11111111 1222222333555 23445666676665 37888887765
Q ss_pred hhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009896 132 KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 164 (523)
Q Consensus 132 ~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~~ 164 (523)
.- +...+...+.+|.+.|||.|.+.
T Consensus 185 ~i--------~~~tvt~~v~rLe~~GlV~R~~~ 209 (250)
T 1p4x_A 185 HH--------KYPQTVRALNNLKKQGYLIKERS 209 (250)
T ss_dssp SS--------CHHHHHHHHHHHHHHTSSEEEEC
T ss_pred CC--------ChhhHHHHHHHHHHCCCEEeeCC
Confidence 32 56789999999999999999863
No 67
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=85.75 E-value=2.7 Score=36.32 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=51.7
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE--EecCC--CCceEEEEEEEchH
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK--LVVTG--ARQSQFLLWKVNRQ 449 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE--vpk~~--~~~~t~~lw~v~~~ 449 (523)
-.+|+++|...+.+ .-.+|++...++...++..+.+|.+.|+|.-.- +.... .+-..|..|.++..
T Consensus 10 d~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~ 79 (152)
T 2cg4_A 10 DRGILEALMGNART-AYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSA 79 (152)
T ss_dssp HHHHHHHHHHCTTS-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSG
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEECCC
Confidence 35789999887888 999999999999999999999999999997432 22222 34456777887754
No 68
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=85.75 E-value=8.3 Score=32.76 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc-cccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF-TTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~-~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.+++++..|-..|-.|.+.|+|... ..++.+ +...+|.+...+
T Consensus 41 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d--~R~~~~~LT~~G 107 (154)
T 2qww_A 41 IQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPND--SMDLTLKLSKKG 107 (154)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTT--CTTCEEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCC--CceeEeEECHHH
Confidence 444568888888999999999999999999999999999999999830 322222 223466665543
No 69
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.57 E-value=8.3 Score=32.92 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.+.-..|..+|..+|++|..+|++.++++...|...|-.|.+.|+|.-...+.+ +...+|.+...+
T Consensus 43 t~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d---~R~~~~~lT~~G 108 (154)
T 2eth_A 43 KTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVD---RRTYRVVLTEKG 108 (154)
T ss_dssp BHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTT---SSCEEEEECHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCC---cceeEEEECHHH
Confidence 344556888888899999999999999999999999999999999984333322 223566665554
No 70
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=85.40 E-value=3.4 Score=34.78 Aligned_cols=61 Identities=10% Similarity=0.183 Sum_probs=47.8
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 444 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw 444 (523)
...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+.-|. ..|..++.
T Consensus 36 ~~~~~~iL~~l~~~~~~-~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~---d~R~~~~~ 96 (142)
T 2bv6_A 36 TYPQFLVLTILWDESPV-NVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEV---DQREVFIH 96 (142)
T ss_dssp CHHHHHHHHHHHHSSEE-EHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSS---STTCEEEE
T ss_pred CHHHHHHHHHHHHcCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCC---CcceEEEE
Confidence 34457888888777777 999999999999999999999999999997644332 24444443
No 71
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=85.39 E-value=7.9 Score=32.43 Aligned_cols=66 Identities=6% Similarity=-0.042 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.+.--.|...|..+|++|..+|++..++++..|...|-.|.+.|+|.-...+.+ +...+|.+...+
T Consensus 28 t~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d---~R~~~~~lT~~G 93 (144)
T 1lj9_A 28 TRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN---KKIKRIYATEKG 93 (144)
T ss_dssp TTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSC---TTCEEEEECHHH
T ss_pred CHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCC---CceeeeEEChhH
Confidence 344566888888899999999999999999999999999999999984333322 223566665554
No 72
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=85.34 E-value=0.81 Score=35.52 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=49.8
Q ss_pred HHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE
Q 009896 377 KRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 431 (523)
Q Consensus 377 ~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEv 431 (523)
+..|..|..||++|...+.+ +-++|.+.+.++.+++--.+-=|.++|=|.+++.
T Consensus 4 ~~IG~nAG~VW~~L~~~~~~-s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~ 57 (82)
T 2l02_A 4 KIVGANAGKVWHALNEADGI-SIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (82)
T ss_dssp HHHHHHHHHHHHHHHHCCSB-CHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCC-CHHHHHHHhCCCHHHHHHHHHHHhccCceeEEee
Confidence 56788999999999888766 9999999999999999999999999999999885
No 73
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.32 E-value=8.5 Score=32.19 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=49.8
Q ss_pred hhHHHHHHHH-HhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECL-LRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~L-l~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.-..|..+| ...|++|..+|++.+++++..|...|-.|.+.|+|.....+.+ +...+|.+...+
T Consensus 37 ~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d---~R~~~~~lT~~G 102 (146)
T 2fbh_A 37 QARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAED---RRAKHIVLTPKA 102 (146)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTT---BCSCEEEECTTH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcc---cCeeeeEECHhH
Confidence 4455677888 6789999999999999999999999999999999984333322 223466665554
No 74
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.31 E-value=15 Score=30.47 Aligned_cols=65 Identities=6% Similarity=0.038 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhcC--CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G--~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.-..|..+|..+| ++|..+|++.+++++..|...|-.|.+.|+|.....+. + +...++.+...+
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~-d--~R~~~i~lT~~G 100 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGK-D--SRQKCLKLTKKA 100 (141)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS-C--TTSEEEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCc-C--CCeeeeEECHHH
Confidence 44456788888888 89999999999999999999999999999998433332 2 223466665554
No 75
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.31 E-value=9.5 Score=31.90 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=45.6
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
+...-++|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-..-|
T Consensus 31 l~~~~~~iL~~l~~~~~~-~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPK-RPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp CCHHHHHHHHHHHHHCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 445567889999888887 99999999999999999999999999999765443
No 76
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=85.28 E-value=1.2 Score=35.09 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
..|-++|-.+|+.++.+|++..++++..||.-|-.|.+.|.|.-.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 467888999999999999999999999999999999999999844
No 77
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=85.24 E-value=6.9 Score=32.47 Aligned_cols=60 Identities=20% Similarity=0.401 Sum_probs=47.5
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEE
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 444 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw 444 (523)
..-.+|+..|..++.+ ...+|++...++...+-..+.+|.+.|||.-..-|. ..|..++.
T Consensus 33 ~~~~~iL~~l~~~~~~-~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~---d~r~~~~~ 92 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKV-SMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPN---DQRETLVY 92 (139)
T ss_dssp HHHHHHHHHHHHSCSE-EHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSS---CTTCEEEE
T ss_pred HHHHHHHHHHHHcCCc-CHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCC---CCceeEEE
Confidence 4456788888777777 999999999999999999999999999997644332 24555443
No 78
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.97 E-value=5.1 Score=33.45 Aligned_cols=67 Identities=9% Similarity=0.101 Sum_probs=50.9
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.+.--.|...|..+|++|..+|++..++++..|...|-.|.+.|+|.....+.+ +...+|.+...+
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d---~R~~~~~lT~~G 100 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKD---QRRVYVNLTEKG 100 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTE---EEEEEEEECHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCC---CCeeEEEECHHH
Confidence 3345556888888889999999999999999999999999999999984433321 223456665443
No 79
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=84.94 E-value=1.1 Score=45.75 Aligned_cols=65 Identities=15% Similarity=0.300 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccC-CCCCCcceEEEechhh
Q 009896 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ-PDGPKANTQYVVLFDN 87 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~-~~~~~~~~~Y~~~~~~ 87 (523)
..|.+.|..+|++|..+|.+.++|++..|.+.+--|++.|+|.-..... .++.+..+.|.+|.+.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~~~~~~~~GR~~~~l~~~~~~ 84 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELEIKEAGNRGRPAVGLVVETEA 84 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-------------CEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeecccCCCCCCCCCeEEEEcCCc
Confidence 5689999999999999999999999999999999999999998444322 2222334678888764
No 80
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=84.91 E-value=1.7 Score=32.21 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=39.2
Q ss_pred HHHHHHHHHhc-CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 22 VAKVCECLLRK-GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 22 v~~V~~~Ll~~-G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
-.+|...|... ++++..+|++.++++...|.+.|-.|.+.|+|.
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 34678888776 479999999999999999999999999999986
No 81
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=84.88 E-value=3.8 Score=35.38 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~ 66 (523)
+.--.|...|..+|++|..+|++.++++...|...|-.|.+.|+|..
T Consensus 49 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 49 IPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRR 95 (162)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 34456778888899999999999999999999999999999999983
No 82
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=84.86 E-value=9.3 Score=31.63 Aligned_cols=65 Identities=8% Similarity=0.048 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|...|..+|++|..+|++..++++..|...|-.|.+.|+|.....+.+ +...+|.+...+
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d---~r~~~~~lT~~G 97 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPND---QRETLVYLTKKG 97 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSC---TTCEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCC---CceeEEEECHHH
Confidence 44556888888899999999999999999999999999999999984433322 223566665554
No 83
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=84.84 E-value=7.2 Score=32.37 Aligned_cols=66 Identities=8% Similarity=0.067 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.+.--.|..+|..+|++|..+|++..++++..|...|-.|.+.|+|.-...+.+ +...+|.+...+
T Consensus 28 ~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d---~R~~~~~lT~~G 93 (138)
T 3bpv_A 28 TDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPEN---RRRYILEVTRRG 93 (138)
T ss_dssp CHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE---EEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCC---ceeEEeeECHhH
Confidence 355567888888899999999999999999999999999999999984333221 223466665543
No 84
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=84.71 E-value=3.4 Score=35.40 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=52.2
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE--EecCC--CCceEEEEEEEchHH
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK--LVVTG--ARQSQFLLWKVNRQI 450 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE--vpk~~--~~~~t~~lw~v~~~~ 450 (523)
.+|+++|...+.+ ...+|++...++...++..+.+|.+.|+|.-.- +.... .+-..+..|.++...
T Consensus 8 ~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~ 77 (144)
T 2cfx_A 8 LNIIEELKKDSRL-SMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNAD 77 (144)
T ss_dssp HHHHHHHHHCSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGGC
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEECccc
Confidence 4789999887887 999999999999999999999999999997432 22222 344567778888764
No 85
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=84.40 E-value=3.9 Score=34.35 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++..++++..|...|-.|.+.|+|.-...+. + +...+|.+...+
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~-d--~R~~~~~lT~~G 101 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEV-D--QREVFIHLTDKS 101 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSS-S--TTCEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCC-C--cceEEEEEChHH
Confidence 4455678888888999999999999999999999999999999998333322 2 224567766554
No 86
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=84.39 E-value=8.7 Score=32.44 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhc-CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t-~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|+..-.|...|. .|++++.+|.+.. +++.+.+-..|-.|.+.|+|.-...+. + +..++|++...+
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~-d--~r~~~y~LT~~G 99 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPV-V--PPHVEYSLTPLG 99 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECS-S--SCEEEEEECHHH
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCC-C--CCeEEEEECccH
Confidence 344445666665 8999999999999 799999999999999999998333322 1 235788887665
No 87
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.38 E-value=8.6 Score=32.00 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=45.5
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||....-|
T Consensus 34 lt~~~~~iL~~l~~~~~~-t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~ 86 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEM-ESYQLANQACILRPSMTGVLARLERDGIVRRWKAP 86 (142)
T ss_dssp CCHHHHHHHHHHHHHCSE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 445567889999888887 99999999999999999999999999999765433
No 88
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=84.34 E-value=5.4 Score=33.24 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.-..|...|..+|++|..+|++.+++++..|...|-.|.+.|+|.-...+. + +...+|.+...+
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~-d--~R~~~~~lT~~G 98 (138)
T 1jgs_A 34 AAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPN-D--KRGVLVKLTTGG 98 (138)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTT-C--SSCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcc-c--CceeEeEEChhH
Confidence 4455678888888999999999999999999999999999999998333322 2 223566665554
No 89
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.21 E-value=1.3 Score=44.85 Aligned_cols=64 Identities=9% Similarity=0.166 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhH
Q 009896 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI 88 (523)
Q Consensus 24 ~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~i 88 (523)
.|.+.|. +|++|-.+|.+.|+|++..|.+.+--|++.|+|.-......++.+..+.|.+|.+..
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence 4788898 999999999999999999999999999999999854433223334457888888853
No 90
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=84.18 E-value=11 Score=32.37 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=49.2
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 444 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw 444 (523)
+...-++|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++.
T Consensus 44 lt~~q~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~ 105 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNL-SNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPT---HGRRILVT 105 (162)
T ss_dssp CCHHHHHHHHHHHHCTTC-CHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCS---SSCCEEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCC---cCCeeEeE
Confidence 344556888888888887 999999999999999999999999999997654443 34544443
No 91
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=84.17 E-value=5.2 Score=33.89 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.++++...|...|-.|.+.|+|.....+.+ +...+|.+-..+
T Consensus 42 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d---~R~~~~~lT~~G 106 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHD---RRVVRIRLLEKG 106 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC------CEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCC---cceeEeEECHhH
Confidence 44456778888889999999999999999999999999999999984333322 223466665544
No 92
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=84.15 E-value=8.2 Score=33.17 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.++++...|...|-.|.+.|+|.-...+. + +...+|.+...+
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~-d--~R~~~~~lT~~G 116 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSD-D--QRSSRVYLTPAG 116 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---C--CSSEEEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCC-C--CCeeEEEECHHH
Confidence 4445688888889999999999999999999999999999999998433332 2 223566665544
No 93
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.09 E-value=11 Score=31.51 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|. .|++|..+|++.+++++..|...|-.|.+.|+|.-...+.+ +...+|.+...+
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d---~r~~~~~lT~~G 100 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDRED---RRKILIEITEKG 100 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSC---TTCEEEEECHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCC---CceEEEEECHHH
Confidence 44445677777 99999999999999999999999999999999983333322 223466665544
No 94
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=84.01 E-value=6.4 Score=32.42 Aligned_cols=100 Identities=12% Similarity=0.157 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcC----CCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhchh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFA 95 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~----l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p 95 (523)
+.=..|..+|-.+|++|..+|...++ ++++.|...|-.|.+.|+|.. ..+ + + ...|.+....-- ....
T Consensus 10 ~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R-~~~--~--r-~~~~~~~~~~~~--~~~~ 81 (126)
T 1sd4_A 10 MAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKR-YKS--E--N-IYFYSSNIKEDD--IKMK 81 (126)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE-EEE--T--T-EEEEEECSCHHH--HHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEE-EeC--C--C-eEEEEEecCHHH--HHHH
Confidence 33446888999999999999999875 689999999999999999983 332 1 2 235554333211 0112
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHcCcCCHHHH
Q 009896 96 KFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 127 (523)
Q Consensus 96 ~~i~~i~~~~G~~a~~I~~~lL~~G~~~~~~l 127 (523)
..-..+...|+.....++..++....++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~ 113 (126)
T 1sd4_A 82 TAKTFLNKLYGGDMKSLVLNFAKNEELNNKEI 113 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHH
Confidence 23344555566566677788877777777665
No 95
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=83.88 E-value=1.3 Score=36.66 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhc--CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHh----
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYT--ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRV---- 92 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t--~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rl---- 92 (523)
.+.-.+|...|..+|++|..+|.... ++++..|++-|-.|..+|+|... . + .+|.+.....-..-
T Consensus 12 d~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~--~-----r--g~Y~LT~~G~~~l~~~~d 82 (111)
T 3b73_A 12 TIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL--A-----N--GVYVITEEGEAYLNGEYD 82 (111)
T ss_dssp CHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC--S-----T--TCEEECHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec--C-----C--ceEEECchHHHHHHHHHH
Confidence 34457788889888999999999999 99999999999999999999842 1 1 18888877632111
Q ss_pred -chhhHHHHHHHHhhHHH
Q 009896 93 -RFAKFLTILSQEFDQQC 109 (523)
Q Consensus 93 -R~p~~i~~i~~~~G~~a 109 (523)
.--.|+..++..+|+.+
T Consensus 83 ~~~~e~l~~~~~~~g~~~ 100 (111)
T 3b73_A 83 AGKERYINRGNSTDEENG 100 (111)
T ss_dssp TTTTEEC-----------
T ss_pred HHHHHHHHHHHHhcCCcc
Confidence 01134555555555544
No 96
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=83.79 E-value=9.2 Score=32.80 Aligned_cols=62 Identities=15% Similarity=0.351 Sum_probs=48.6
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 444 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw 444 (523)
+...-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-..-|. ..|..++.
T Consensus 48 lt~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~ 109 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGI-NQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEK---DRRSYRVF 109 (159)
T ss_dssp CCTTTHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC------CCEEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCC---CCCeeEEE
Confidence 445668899999887777 999999999999999999999999999996644332 34555544
No 97
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=83.75 E-value=6.8 Score=32.83 Aligned_cols=66 Identities=8% Similarity=0.040 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.-...+.+ +...+|.+...+
T Consensus 32 ~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d---~r~~~~~lT~~G 97 (145)
T 2a61_A 32 TPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPAD---RRAYFLVITRKG 97 (145)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE---EEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCC---CceEEEEECHHH
Confidence 345566788888889999999999999999999999999999999984333221 223466665554
No 98
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=83.59 E-value=8.5 Score=32.06 Aligned_cols=60 Identities=8% Similarity=-0.008 Sum_probs=47.0
Q ss_pred CchHHHHHHHHhhC--CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEE
Q 009896 381 RDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 444 (523)
Q Consensus 381 ~~a~RI~r~L~~k~--~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw 444 (523)
..-++|+..|...+ .+ ...+|++...++...+-..+.+|.+.|||.-..-|. ..|..++.
T Consensus 31 ~~~~~vL~~l~~~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~---D~R~~~~~ 92 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGL-TQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQ---DTRRKNIG 92 (139)
T ss_dssp HHHHHHHHHHHHSTTTCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC-----CCEEEE
T ss_pred HHHHHHHHHHHhcCCCCc-CHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCC---CCCeeeeE
Confidence 45678899998775 66 999999999999999999999999999997654443 24544443
No 99
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=83.56 E-value=1 Score=33.50 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 427 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~ 427 (523)
.+|+.+|...+.-+.-.+|++..-+|...+.+.+..|.++|||.
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 36888887665434999999999999999999999999999973
No 100
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=83.50 E-value=3.8 Score=45.56 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=86.2
Q ss_pred cCCCcHHHHHhhcCCCHHHHHHHHHHHH--hhcccccccccCCCCCCcceEEEechh--hHHHHhchhhHH---------
Q 009896 32 KGPLTRQNVKRYTELSDEQVKNALLVLI--QQNCVQAFTTEQPDGPKANTQYVVLFD--NILHRVRFAKFL--------- 98 (523)
Q Consensus 32 ~G~ltl~~l~~~t~l~~~~vr~aL~vLi--Qhn~V~~~~~~~~~~~~~~~~Y~~~~~--~il~rlR~p~~i--------- 98 (523)
...+|+.+|...|+++...++.+|..|+ +.+++. .. +.++.......|.+|.+ .-..+++.+.+-
T Consensus 605 ~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~-~~-p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~~ 682 (759)
T 2hye_C 605 GDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLI-KS-PKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQV 682 (759)
T ss_dssp CCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEE-ET-TCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceee-cC-CCCCCCCCCCEEEeeccccCCceEEEeccccccccchhhh
Confidence 4688999999999999999999999999 677775 22 11111112246776655 233444443221
Q ss_pred ---HHHH-HHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 99 ---TILS-QEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 99 ---~~i~-~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
..|. ++--..-|.||..+=..+.++-.+|+..+.+... -..+...|+..+..|++.+||+|.+
T Consensus 683 ~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~ 749 (759)
T 2hye_C 683 STTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDK 749 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCC
Confidence 1111 1111235778888888899998999888766332 1236889999999999999999985
No 101
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=83.24 E-value=4.2 Score=35.19 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHHHHHHHHHHHHHHH
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAA 463 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~~~~~~l~~~~k~~ 463 (523)
.+|+.+|. .|.. ..-+|++...++-..|+-.||.|.++|.|. ||.++. .=+|.++.+ .+...+.++.+.+
T Consensus 14 ~~ILE~Lk-~G~~-~t~~Iak~LGlShg~aq~~Ly~LeREG~V~--~Vk~GK-----~ayw~L~~s-~y~~kV~dilrel 83 (165)
T 2vxz_A 14 RDILALLA-DGCK-TTSLIQQRLGLSHGRAKALIYVLEKEGRVT--RVAFGN-----VALVCLSMD-QYRQLVDGMIREV 83 (165)
T ss_dssp HHHHHHHT-TCCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSCE--EEEETT-----EEEEESCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCc-cHHHHHHHhCCcHHHHHHHHHHHHhcCceE--EEEEcc-----EEEEEecHH-HHHHHHHHHHHHH
Confidence 47888997 8888 999999999999999999999999999995 465552 347888866 4444666776666
Q ss_pred HHHH
Q 009896 464 LNLS 467 (523)
Q Consensus 464 ~nl~ 467 (523)
..++
T Consensus 84 ~~~l 87 (165)
T 2vxz_A 84 ERLV 87 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 102
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=83.10 E-value=7.5 Score=32.30 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=44.4
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
+...-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||....
T Consensus 36 l~~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPC-PQNQLGRLTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp CCHHHHHHHHHHHHHSSB-CHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 344567899999888877 999999999999999999999999999997643
No 103
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=83.08 E-value=5.3 Score=40.49 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=83.6
Q ss_pred CCCcHHHHHhhcCCCHHHHHHHHHHHHh-----hcccccccccCCCC-CCcceEEEechhhH-------HHHhchhhH--
Q 009896 33 GPLTRQNVKRYTELSDEQVKNALLVLIQ-----QNCVQAFTTEQPDG-PKANTQYVVLFDNI-------LHRVRFAKF-- 97 (523)
Q Consensus 33 G~ltl~~l~~~t~l~~~~vr~aL~vLiQ-----hn~V~~~~~~~~~~-~~~~~~Y~~~~~~i-------l~rlR~p~~-- 97 (523)
..+|+.+|...|+++...++.+|..|+. ++++........+. ......|.+|.+=- ..+++.+-.
T Consensus 214 ~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~ 293 (382)
T 3dpl_C 214 EKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGR 293 (382)
T ss_dssp CCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTT
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccc
Confidence 5789999999999999999999999986 45665222110000 01124677776532 233333211
Q ss_pred ------H------HHH-HHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 98 ------L------TIL-SQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 98 ------i------~~i-~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
. ..| +.+--..-|.||.-.=....++-.+|+..+.+....-=..+...|+..+..|++.+||+|.+
T Consensus 294 ~q~~~~~e~~~~~~~v~edR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~ 372 (382)
T 3dpl_C 294 LQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDE 372 (382)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cccccchhhhhhHHHHHHHhhheeeEEEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCC
Confidence 0 011 11111234677777778889998999888765432111236788999999999999999985
No 104
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=83.07 E-value=5.6 Score=31.13 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=43.9
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
.-.+|+..|...+.+ ...+|++...++...+-..|.+|.+.|+|.-...|
T Consensus 17 ~~~~iL~~L~~~~~~-~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKA-PFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HHHHHHHHHHHHSEE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHhcCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 357789988777777 99999999999999999999999999999776554
No 105
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=82.71 E-value=4.5 Score=34.26 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.-.
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 344468888888999999999999999999999999999999999833
No 106
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=82.62 E-value=1.9 Score=34.27 Aligned_cols=65 Identities=9% Similarity=0.263 Sum_probs=49.4
Q ss_pred CCchHHHHHHHHhhC--CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCC-CCceEEEEEEEc
Q 009896 380 GRDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVN 447 (523)
Q Consensus 380 G~~a~RI~r~L~~k~--~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~-~~~~t~~lw~v~ 447 (523)
...-+.|+++|...| .+ .+++|++..-++...+-.+|-+|.+.|||.- ++... ...+.++||.+.
T Consensus 19 t~~q~~Vl~~I~~~g~~gi-~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr--~~~~~~~~rKvy~Ly~l~ 86 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGNKGI-WSRDVRYKSNLPLTEINKILKNLESKKLIKA--VKSVAASKKKVYMLYNLS 86 (91)
T ss_dssp CSSHHHHHHHHHHHCTTCE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ECCSSCSSCCEEEESSSC
T ss_pred CHHHHHHHHHHHHcCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCCCCCCcEEEEEeccC
Confidence 344567899998744 67 9999999999999999999999999999942 23222 445666666544
No 107
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=82.52 E-value=7.7 Score=32.63 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.+++++..|-..|-.|.+.|+|. ...++.+ +...+|.+-..+
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~-r~~~~~D--~R~~~~~LT~~G 95 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE-WQEGEQD--RRKRLLSLTETG 95 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-ECCCSSC--GGGSCEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe-eccCCCC--CceeeeeEChhH
Confidence 4445677888889999999999999999999999999999999998 3332222 223466665554
No 108
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.44 E-value=5.5 Score=33.28 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhcC--CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G--~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+| ++|..+|++.+++++..|-..+-.|.+.|+|.-...+. + +...++.+-..+
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~-D--~R~~~~~LT~~G 97 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQ-D--TRRKNIGLTTSG 97 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC-----CCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCC-C--CCeeeeEECHHH
Confidence 44566888888886 99999999999999999999999999999998333332 2 223455554443
No 109
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=82.40 E-value=9.4 Score=31.98 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.+++++..|-..+-.|.+.|+|.-...+. + +...++.+-..+
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~-D--~R~~~~~LT~~G 101 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTE-D--RRISLLSLTDKG 101 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CCSCEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCc-c--CceeeeeECHHH
Confidence 4445677888888999999999999999999999999999999998333322 2 223466665544
No 110
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.91 E-value=5.2 Score=35.53 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce-EEEEecC-C--CCceEEEEEEEchH
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVT-G--ARQSQFLLWKVNRQ 449 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~-lQEvpk~-~--~~~~t~~lw~v~~~ 449 (523)
-.+|+++|...+.+ ..++|++...++...++..+.+|.+.|+|. ..-+... . .+ ..+..|.++..
T Consensus 19 d~~IL~~L~~~~~~-s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~-~a~v~v~~~~~ 87 (171)
T 2ia0_A 19 DRNILRLLKKDARL-TISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKH-LALIVLEVGKP 87 (171)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSE-EEEEEEEESCC
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcc-eEEEEEEECCc
Confidence 35789999888888 999999999999999999999999999995 4333222 2 34 55666677654
No 111
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=81.72 E-value=9.3 Score=31.26 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcC----CCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhchh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFA 95 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~----l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p 95 (523)
+.-..|..+|...|++|..+|+...+ +++..|...|-.|.+.|+|..... + + ...|..-.+.--.. ..
T Consensus 10 ~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~--~---r-r~~~~~lT~~g~~~--~~ 81 (123)
T 1okr_A 10 SAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD--N---K-IFQYYSLVEESDIK--YK 81 (123)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE--T---T-EEEEEESSCHHHHH--HH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec--C---C-eEEEEEecCHHHHH--HH
Confidence 44456777888889999999999987 889999999999999999983332 1 2 23443333321111 12
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHcCcCCHHHH
Q 009896 96 KFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 127 (523)
Q Consensus 96 ~~i~~i~~~~G~~a~~I~~~lL~~G~~~~~~l 127 (523)
.....++..++.....++..++....++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~ 113 (123)
T 1okr_A 82 TSKNFINKVYKGGFNSLVLNFVEKEDLSQDEI 113 (123)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCHHHH
Confidence 33344455555555566666765566776654
No 112
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=81.68 E-value=1.1 Score=34.24 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=51.1
Q ss_pred HHHcCCchHHHHHHHHhhCCCcchhhhhhhcCC-CcccHHHHHHHHhhcccceEEEEec
Q 009896 376 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV-EKKDAPKILYKLWKDGYLLMEKLVV 433 (523)
Q Consensus 376 ~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami-~~k~~R~~L~~L~~~g~v~lQEvpk 433 (523)
.+..|..|..||++|-..+.+ +-++|.+.+.+ +.+++--.+-=|.++|=|.+.+..+
T Consensus 5 k~~IG~nAG~VW~~L~~~~~~-s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~~~ 62 (77)
T 2l01_A 5 KEKAGALAGQIWEALNGTEGL-TQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEG 62 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSSCE-EHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEeeCC
Confidence 456789999999999777666 99999999999 9999999999999999999987655
No 113
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=81.59 E-value=2.6 Score=32.43 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 110 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 110 ~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
..|++.|-.+|.++++++.+.+.- +...|+.-+..|.+.|+|.|++
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~V--------S~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNT--------PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTC--------CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc--------CHHHHHHHHHHHHHCCCEEEec
Confidence 468888889999999999888642 6788999999999999999993
No 114
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=81.51 E-value=8.8 Score=31.93 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=43.7
Q ss_pred CchHHHHHHHHhhC--CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 381 RDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 381 ~~a~RI~r~L~~k~--~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
..-.+|+..|...+ .+ ...+|++...++...+...+.+|.+.|||.-+.-|
T Consensus 34 ~~~~~iL~~l~~~~~~~~-~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEV-LQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp HHHHHHHHHHHHTTTSCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHCCCCCc-CHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 44577888888776 56 99999999999999999999999999999765433
No 115
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=81.38 E-value=5.9 Score=34.60 Aligned_cols=65 Identities=6% Similarity=0.039 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
..--.|..+|..+|++|..+|++.++++...|-..|-.|.+.|+|.-...+. + +...++.+-..+
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~-D--rR~~~~~LT~~G 109 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPT-S--RRELLAALTKRG 109 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS-C--SSCEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCC-C--CCeeEEEECHHH
Confidence 4444677888888999999999999999999999999999999998333322 2 223456655443
No 116
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=81.30 E-value=9.1 Score=32.60 Aligned_cols=65 Identities=9% Similarity=0.150 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
..--.|..+|..+|++|..+|++.++++...|...|-.|.+.|+|.-...+. + .+ ..+|.+-..+
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~-d-~R-~~~~~lT~~G 107 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAK-D-KR-RVRVRLTDDG 107 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---------CCCEEECHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCC-c-CC-eeEeEECHHH
Confidence 4445677888888999999999999999999999999999999998333322 1 12 3456655543
No 117
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=81.16 E-value=6.2 Score=31.86 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcC-CCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTE-LSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~-l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|+..-.|...|. .|++++.+|.+..+ ++++.+-..|-.|.+.|+|.-...+. + +...+|++...+
T Consensus 24 ~~~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~-d--~r~~~y~LT~~G 89 (107)
T 2fsw_A 24 GKWTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPE-V--PPRVEYSLTPLG 89 (107)
T ss_dssp SSSHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECS-S--SCEEEEEECHHH
T ss_pred CccHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCC-C--CCeeEEEECccH
Confidence 344455777775 89999999999995 99999999999999999998333322 1 235688887765
No 118
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=81.15 E-value=5 Score=35.03 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE-EEEecC-C--CCceEEEEEEEchHH
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM-EKLVVT-G--ARQSQFLLWKVNRQI 450 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l-QEvpk~-~--~~~~t~~lw~v~~~~ 450 (523)
-.+|+++|...+.+ .-.+|++...++...++..+.+|.+.|+|.- .-.... . .+-..+..|.++...
T Consensus 12 ~~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~ 82 (162)
T 2p5v_A 12 DIKILQVLQENGRL-TNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAK 82 (162)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSST
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEcCCc
Confidence 35789999888888 9999999999999999999999999999973 322221 1 334567777887653
No 119
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=81.10 E-value=7.8 Score=33.43 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=44.4
Q ss_pred HcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 378 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 378 ~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
-+...-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-.
T Consensus 50 glt~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGEL-TVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3455567888899888887 99999999999999999999999999999553
No 120
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=81.04 E-value=24 Score=29.65 Aligned_cols=66 Identities=9% Similarity=0.018 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.+.-..|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.-...+. + +...+|.+...+
T Consensus 39 t~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~-d--~R~~~~~lT~~G 104 (152)
T 3bj6_A 39 TVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPE-H--ARSHRYWLTPRG 104 (152)
T ss_dssp CHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSS-S--TTSCEEEECHHH
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcc-c--ccceeeEEChhh
Confidence 34555788888889999999999999999999999999999999998433332 2 223466665543
No 121
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=80.92 E-value=4.5 Score=34.09 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~ 66 (523)
+.--.|..+|..+|++|..+|+..+++++..|-..+-.|.+.|+|.-
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r 83 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRR 83 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 45566888888899999999999999999999999999999999983
No 122
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=80.73 E-value=16 Score=31.17 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=49.5
Q ss_pred EehHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 357 V~~~~i~~~lr~~~le~~v~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.-|+.+...-+....+.++.. |+.++...+.+ ...+|++...++...++..|.+|...|||..
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~--------i~~~l~~~~~~-~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r 86 (155)
T 2h09_A 24 EGFRQVREAHRRELIDDYVEL--------ISDLIREVGEA-RQVDMAARLGVSQPTVAKMLKRLATMGLIEM 86 (155)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhhccccHHHHHHHHH--------HHHHHHhCCCc-CHHHHHHHhCcCHHHHHHHHHHHHHCCCEEE
Confidence 335666666666666666553 66677666777 9999999999999999999999999999854
No 123
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=80.68 E-value=11 Score=31.87 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=51.5
Q ss_pred hhhc-hhHHHHHHHHHhcCCCcHHHHHhhc-CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 16 NHFG-DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 16 ~~FG-~~v~~V~~~Ll~~G~ltl~~l~~~t-~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.+| ...-.|...|. .|++++.+|.+.. +++.+.+-..|-.|.+.|+|. -...+.+ +..++|++-..+
T Consensus 21 ~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~-R~~~~~d--~r~v~y~LT~~G 90 (131)
T 4a5n_A 21 DVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVH-REVYHQV--PPKVEYSLTEFG 90 (131)
T ss_dssp HHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE-EEEECSS--SCEEEEEECTTG
T ss_pred HHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEE-EEecCCC--CCeEEEEECHhH
Confidence 4444 44555666665 8999999999999 999999999999999999998 3332222 235788886665
No 124
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=80.61 E-value=5.1 Score=33.81 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhH
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI 88 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~i 88 (523)
+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.....+. + +...++.+...+.
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~-d--~R~~~~~LT~~G~ 105 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEE-D--ERSVLISLTEDGA 105 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSS-C--TTSBEEEECHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCC-C--CCeeEEEECHhHH
Confidence 3445678888888999999999999999999999999999999998333322 2 2235666666553
No 125
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.56 E-value=15 Score=31.03 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|.-...+.+ +...+|.+-..+
T Consensus 37 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d---~R~~~~~lT~~G 101 (155)
T 1s3j_A 37 PAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKD---RRVIDLSLTDEG 101 (155)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSC---TTSEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCC---CceEEEEECHHH
Confidence 44456778888889999999999999999999999999999999984333322 223466665543
No 126
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=80.46 E-value=8.7 Score=32.22 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=44.1
Q ss_pred HHHHHH-HHc--CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 371 VESVVS-KRY--GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 371 le~~v~-~~~--G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
+...+. ..+ ...-++|+..|..++.+ ...+|++...++...+-..+.+|.+.|||.-.
T Consensus 24 ~~~~l~~~~~~lt~~~~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 24 IQSELDCQRLDLTPPDVHVLKLIDEQRGL-NLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHTTTC-CHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHhCCCc-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 444444 223 45667899999888887 99999999999999999999999999999554
No 127
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=80.31 E-value=2.3 Score=32.73 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=38.8
Q ss_pred HHHHHHHHHhc------CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 22 VAKVCECLLRK------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 22 v~~V~~~Ll~~------G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
...|.++|-.+ |+.|+.+|+..+++++..|+.=|..|.+.|++.
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 34566666666 899999999999999999999999999999997
No 128
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=80.26 E-value=6.3 Score=33.91 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++..++++..|-..+-.|.+.|+|.-...+. + +...++.+-..+
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~-D--rR~~~l~LT~~G 114 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEK-D--RRSYRVFLTEKG 114 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC------CCEEEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCC-C--CCeeEEEECHHH
Confidence 3345678888889999999999999999999999999999999998333332 2 123455554443
No 129
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=80.25 E-value=1.2 Score=45.97 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccccc-ccCCCCCCcceEEEechhh
Q 009896 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT-TEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~-~~~~~~~~~~~~Y~~~~~~ 87 (523)
-..|.+.|..+|++|..+|.+.|+|++..|.+.+--|++.|+|.... ....++.+..+.|.+|.+.
T Consensus 41 ~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~~~~~s~~GR~~~~l~~~~~~ 107 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETTVQEAISRGRPAVGLQTNNLG 107 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECHHHHHHHTSCCEEEEECCTT
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccccCCCCCCCCCeEEEECCCC
Confidence 35689999999999999999999999999999999999999998443 2111112334678888764
No 130
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=80.13 E-value=4.9 Score=33.84 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.+++++..|-..+-.|.+.|+|.-...+.+ +...++.+-..+
T Consensus 36 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D---~R~~~~~LT~~G 100 (140)
T 3hsr_A 36 YTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKD---ERNLQISLTEQG 100 (140)
T ss_dssp HHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----------CEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCC---cceeeeeEChHH
Confidence 44445677777789999999999999999999999999999999983333322 223466665554
No 131
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=80.06 E-value=14 Score=30.88 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=45.1
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 431 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEv 431 (523)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-..-
T Consensus 27 lt~~~~~iL~~l~~~~~~-t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~ 78 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGI-IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQED 78 (144)
T ss_dssp CTTTHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHHCcCc-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecC
Confidence 455567899999887777 9999999999999999999999999999976443
No 132
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=79.88 E-value=4.2 Score=35.03 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=50.7
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce-EEEEecCC---CCceEEEEEEEchH
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVTG---ARQSQFLLWKVNRQ 449 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~-lQEvpk~~---~~~~t~~lw~v~~~ 449 (523)
.-.+|+++|...+.+ ...+|++...++...++..+.+|.+.|+|. ..-+.... .+-..|..|.++..
T Consensus 10 ~d~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~ 80 (151)
T 2dbb_A 10 VDMQLVKILSENSRL-TYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPS 80 (151)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCC
Confidence 345799999887888 999999999999999999999999999996 33322221 22345666677654
No 133
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=79.83 E-value=12 Score=32.10 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=44.7
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
+...-++|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+.-|
T Consensus 50 lt~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGL-PIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp CCHHHHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCC
Confidence 344557889999877777 99999999999999999999999999999765433
No 134
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=79.49 E-value=1.9 Score=36.36 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=41.3
Q ss_pred CchHHHHHHHHhh--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 381 RDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 381 ~~a~RI~r~L~~k--~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
..|+||+..|..+ +..+..++|++..-+|...++++|..|.+.|||..
T Consensus 9 ~~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 9 RYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 4578899988764 34459999999999999999999999999999854
No 135
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=79.43 E-value=16 Score=33.94 Aligned_cols=139 Identities=12% Similarity=0.153 Sum_probs=93.4
Q ss_pred HHHHHHHhccchhcccccccCCccccHHHHHHHhhhhccCCCCCHHHHHHHHHHhccC-----C-C-CCCCCCeEEEehH
Q 009896 288 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGEL-----S-F-VDASSDSYSIDFE 360 (523)
Q Consensus 288 ~v~~~~L~~~~~~~~~~~~~~s~~~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~~-----~-~-~~~~~~~y~V~~~ 360 (523)
.+++++|-.. ..|++..+|.+.+. ...+.+...|..|..+ . + .-.-+|.|.+-.+
T Consensus 18 ~~iEAlLf~a-----------~epvs~~~La~~l~-------~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~ 79 (219)
T 2z99_A 18 RVLEALLLVI-----------DTPVTADALAAATE-------QPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTR 79 (219)
T ss_dssp HHHHHHHHHC-----------SSCBCHHHHHHHHT-------SCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHc-----------CCCCCHHHHHHHHC-------cCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEc
Confidence 4677777764 24799999988774 2344566666665432 1 1 1233566776655
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceE
Q 009896 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ 440 (523)
Q Consensus 361 ~i~~~lr~~~le~~v~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t 440 (523)
.-..-.-.+.+..--..++...++.++.++.-++-+ .--+|++.-.+.. -.++.+|...|+|. |+.+...++
T Consensus 80 ~e~~~~v~~~~~~~~~~~Ls~aaLEtLaiIAy~QPI-TR~eI~~irGv~~---~~~v~~Lle~gLI~--e~Gr~~~~G-- 151 (219)
T 2z99_A 80 ARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPV-TRARVSAVRGVNV---DAVMRTLLARGLIT--EVGTDADTG-- 151 (219)
T ss_dssp GGGHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCSE-EHHHHHHHHTSCC---HHHHHHHHHTTSEE--EEEECTTTC--
T ss_pred HHHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCc-CHHHHHHHHCCCH---HHHHHHHHHCCCEE--EccccCCCC--
Confidence 544433344444333457888899999999888666 9999999999986 57999999999994 455544444
Q ss_pred EEEEEEchHHHH
Q 009896 441 FLLWKVNRQILW 452 (523)
Q Consensus 441 ~~lw~v~~~~~~ 452 (523)
-++|.++..-..
T Consensus 152 p~ly~tT~~Fl~ 163 (219)
T 2z99_A 152 AVTFATTELFLE 163 (219)
T ss_dssp CEEEEECHHHHH
T ss_pred CeEEEECHHHHH
Confidence 568888766433
No 136
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=79.33 E-value=12 Score=31.56 Aligned_cols=51 Identities=10% Similarity=0.253 Sum_probs=43.8
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
..-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||....-|
T Consensus 42 ~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 92 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDL-TVGELSNKMYLACSTTTDLVDRMERNGLVARVRDE 92 (150)
T ss_dssp HHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 3457788888888877 99999999999999999999999999999765433
No 137
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=79.31 E-value=2.9 Score=32.94 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 110 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 110 ~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
..|++.|-.+|.++++++.+.+.- +...|+.-+..|.+.|+|.|++
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~V--------S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQT--------PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTC--------CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc--------CHHHHHHHHHHHHHCCCEEEEe
Confidence 468888889999999999888642 6788999999999999999984
No 138
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=78.81 E-value=19 Score=30.87 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++..++++..|-..|-.|.+.|+|.-...+. + .+ ..++.+-..+
T Consensus 53 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~-D-rR-~~~~~LT~~G 117 (161)
T 3e6m_A 53 TPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDA-D-QR-KRTVVLTRKG 117 (161)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC----C-CC-SCEEEECHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcc-c-CC-eeEeeECHHH
Confidence 3344577888888999999999999999999999999999999998333322 2 12 3456655444
No 139
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=78.67 E-value=8 Score=32.80 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHhhC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEE
Q 009896 380 GRDAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 444 (523)
Q Consensus 380 G~~a~RI~r~L~~k~-~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw 444 (523)
...-++|+.+|...+ .+ ...+|++...++...+-.++.+|.+.|||.-..-|. ..|..++.
T Consensus 38 t~~q~~vL~~l~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~---D~R~~~~~ 99 (150)
T 3fm5_A 38 RVRSYSVLVLACEQAEGV-NQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPS---DRRNKLIA 99 (150)
T ss_dssp CHHHHHHHHHHHHSTTCC-CSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------------CE
T ss_pred CHHHHHHHHHHHhCCCCc-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcc---ccchheee
Confidence 344677888886554 55 999999999999999999999999999995543332 34544443
No 140
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=78.50 E-value=15 Score=30.69 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
...-.+|+..|. .+.+ ...+|++...++...+...+.+|.+.|||.-..
T Consensus 36 ~~~~~~iL~~l~-~~~~-~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 36 SYLDFLVLRATS-DGPK-TMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp CHHHHHHHHHHT-TSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHh-cCCc-CHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 345667888887 7777 999999999999999999999999999996543
No 141
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=78.31 E-value=32 Score=29.58 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCchHHHHHHHHhhC--CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEE
Q 009896 380 GRDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWK 445 (523)
Q Consensus 380 G~~a~RI~r~L~~k~--~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~ 445 (523)
...-++|+.+|...| .+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++.-
T Consensus 45 t~~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~L 108 (168)
T 3u2r_A 45 SAQQYNTLRLLRSVHPEGM-ATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPE---NRRVVEVAL 108 (168)
T ss_dssp CHHHHHHHHHHHHHTTSCE-EHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCC---CCCeeEeEE
Confidence 345577888887753 66 999999999999999999999999999997654443 355555443
No 142
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=78.23 E-value=13 Score=29.08 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCcHHHH----HhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhH
Q 009896 22 VAKVCECLLRKGPLTRQNV----KRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI 88 (523)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~l----~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~i 88 (523)
--.|...|..+|++|..+| .+..++++..|...|-.|.+.|+|.....+ + ..+|.+-..+-
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~-----r-~~~~~LT~~G~ 74 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER-----G-EKRLYLTEKGK 74 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET-----T-EEEEEECHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC-----C-ceEEEECHHHH
Confidence 3467778888899999999 888999999999999999999999732222 1 34677666553
No 143
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=77.65 E-value=11 Score=31.90 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.+++++..|-..+-.|.+.|+|.-...+. + +...++.+-..+
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~-D--~R~~~~~LT~~G 105 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQS-D--KRQLIITLTDNG 105 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC------------CEEEECSHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCC-C--cceeeeeECHHH
Confidence 4455777888889999999999999999999999999999999998333322 2 223466665544
No 144
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=77.57 E-value=1.2 Score=44.74 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHHHHHHHHHHHHHH
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHA 462 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~~~~~~l~~~~k~ 462 (523)
-+++++.|+..|.+ .-.+|++.+.+|...+...|.+|.+.|+|..+ .+ .| ..+.-++++.+...+..+.-..
T Consensus 20 ea~vY~~Ll~~g~~-t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~---~g-~p---~~y~av~p~~~l~~l~~~~~~~ 91 (342)
T 3qph_A 20 EILTYWTLLVYGPS-TAKEISTKSGIPYNRVYDTISSLKLRGFVTEI---EG-TP---KVYAAYSPRIAFFRFKKELEDI 91 (342)
T ss_dssp TTSCSHHHHHHHHH-HHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEE---CC-TT---CEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE---cC-ce---eEEEEcCHHHHHHHHHHHHHHH
Confidence 35778888888888 99999999999999999999999999999876 12 23 2355788887877777775554
Q ss_pred HHHH
Q 009896 463 ALNL 466 (523)
Q Consensus 463 ~~nl 466 (523)
+.++
T Consensus 92 ~~~L 95 (342)
T 3qph_A 92 MKKL 95 (342)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 145
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=77.47 E-value=13 Score=31.07 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=43.6
Q ss_pred cCCchHHHHHHH-HhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 379 YGRDAYRIFRLL-SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 379 ~G~~a~RI~r~L-~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
+...-.+|+..| ...+.+ ...+|++...++...+...+.+|.+.|||...
T Consensus 35 l~~~~~~iL~~l~~~~~~~-t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSP-TQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCC-CHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 345668899999 666777 99999999999999999999999999999664
No 146
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=77.40 E-value=3 Score=35.38 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
.+|...|...|++|..+|++..+++++.|+..|-.|.+.|+|.-+
T Consensus 7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 467778888899999999999999999999999999999999633
No 147
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.06 E-value=18 Score=30.99 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.+++++..|-..|-.|.+.|+|.-...+. + +...++.+-..+
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~-D--rR~~~l~LT~~G 110 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPT-H--GRRILVTVTPSG 110 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCS-S--SCCEEEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCC-c--CCeeEeEECHhH
Confidence 3444678888889999999999999999999999999999999998333332 2 223455554443
No 148
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=76.89 E-value=9.4 Score=29.73 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=41.2
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
..-.+|+..|...+.+ ...+|++...++...+...|..|.+.|+|.-.
T Consensus 24 ~~~~~il~~l~~~~~~-s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGT-SAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HHHHHHHHHHTTCCSE-EHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHhCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3456788888554466 99999999999999999999999999999665
No 149
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.62 E-value=13 Score=31.37 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=43.0
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
+...-++|+.+| ..+.+ ...+|++...++...+-..+.+|.+.|||.-+
T Consensus 36 lt~~q~~iL~~l-~~~~~-t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEAL-TVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp CCHHHHHHHHHH-HHSCB-CHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred CCHHHHHHHHHH-HcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 345567899999 88888 99999999999999999999999999999654
No 150
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=76.58 E-value=24 Score=29.47 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 24 ~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.|...+-..|++|..+|++..+++++.|...|-.|.+.|+|.
T Consensus 12 ~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~ 53 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI 53 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 344444567899999999999999999999999999999997
No 151
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=76.11 E-value=3.9 Score=35.19 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=44.3
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccccc
Q 009896 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (523)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~ 68 (523)
+.+.=.+|...|...|+.|..+|++.+++++..|..-|-.|.+.|+|..+.
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 344456788889889999999999999999999999999999999996343
No 152
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=76.07 E-value=7.9 Score=33.32 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechh
Q 009896 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFD 86 (523)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~ 86 (523)
..-.|...|. .|++++.+|.+.++++.+.+-..|-.|.++|+|.-...+. .+ ..+|.+-..
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~---d~-~~~y~LT~~ 85 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAES---GS-HQEYRLTDK 85 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS---SS-CEEEEECHH
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCC---CC-eEEEEECch
Confidence 3344666664 7999999999999999999999999999999998333322 23 468887644
No 153
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=76.06 E-value=10 Score=31.55 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=48.5
Q ss_pred HHHHHHHcC--CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 372 ESVVSKRYG--RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 372 e~~v~~~~G--~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
.....+.+| ..-.+|+..|..++.+ ...+|++...++...+...+.+|.+.|||....-|
T Consensus 20 ~~~~~~~~~l~~~~~~iL~~l~~~~~~-~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~ 81 (142)
T 3bdd_A 20 SNLFEKQLGISLTRYSILQTLLKDAPL-HQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNP 81 (142)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 334444434 4567889999888887 99999999999999999999999999999765433
No 154
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=76.04 E-value=3.9 Score=35.89 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=51.1
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce-EEEEecCC---CCceEEEEEEEchH
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVTG---ARQSQFLLWKVNRQ 449 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~-lQEvpk~~---~~~~t~~lw~v~~~ 449 (523)
.+|+++|.+.+.+ .-.+|++...++...++.-+.+|.+.|+|. +.-+.... .+...|..|.++..
T Consensus 6 ~~il~~L~~~~~~-s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~ 74 (162)
T 3i4p_A 6 RKILRILQEDSTL-AVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASH 74 (162)
T ss_dssp HHHHHHHTTCSCS-CHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSC
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCC
Confidence 5799999888888 999999999999999999999999999995 22221111 34456778888763
No 155
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=75.97 E-value=21 Score=30.87 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=44.2
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 43 lt~~~~~iL~~L~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPI-NLATLATLLGVQPSATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp CCHHHHHHHHHHHHHCSE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecc
Confidence 344557889999888887 999999999999999999999999999996543
No 156
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=75.85 E-value=8 Score=32.89 Aligned_cols=49 Identities=6% Similarity=0.115 Sum_probs=43.0
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-
T Consensus 39 lt~~~~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGI-SVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 334457889999887777 9999999999999999999999999999965
No 157
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=75.68 E-value=20 Score=29.59 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=43.0
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
..-++|+..|..++.+ ...+|++...++...+-..+.+|.+.|||.-..
T Consensus 34 ~~~~~iL~~l~~~~~~-~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 34 AAQFKVLCSIRCAACI-TPVELKKVLSVDLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp HHHHHHHHHHHHHSSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 3457888888887777 999999999999999999999999999997643
No 158
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=75.66 E-value=10 Score=31.37 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~--G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+ |++|..+|++..++++..|-..|-.|.+.|+|.....+.+ .+ ..++.+-..+
T Consensus 37 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D--~R-~~~i~LT~~G 103 (127)
T 2frh_A 37 FEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHD--ER-TVLILVNAQQ 103 (127)
T ss_dssp HHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSS--SC-CCEEECCSHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCC--CC-eeEEEECHHH
Confidence 3344577788888 8999999999999999999999999999999983333322 12 3455555554
No 159
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=75.56 E-value=3.8 Score=35.12 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
.=.+|...|...|+.|..+|++.+++++..|+.-|-.|.+.|++.-+
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 33478888888999999999999999999999999999999999733
No 160
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.44 E-value=4.1 Score=31.09 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcC----CCHHHHHHHHHHHHhhccccc
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~----l~~~~vr~aL~vLiQhn~V~~ 66 (523)
++.=..|..+|...|++|..+|....+ +++..|...|-.|.+.|+|..
T Consensus 8 t~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r 59 (82)
T 1p6r_A 8 SDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNH 59 (82)
T ss_dssp CHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEE
Confidence 344456888888899999999998864 789999999999999999983
No 161
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=75.42 E-value=24 Score=29.32 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=44.1
Q ss_pred HcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 378 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 378 ~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
-++..-++|+..|...+. ...+|++...++...+-..+.+|.+.|||.-..-|
T Consensus 34 ~lt~~~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 86 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDS 86 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCC
Confidence 355566888988876654 99999999999999999999999999999765433
No 162
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=74.92 E-value=8.6 Score=32.25 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
...-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 36 t~~~~~iL~~l~~~~~~-t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 36 TPEQWSVLEGIEANEPI-SQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp CHHHHHHHHHHHHHSSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHcCCc-CHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 34567888888888888 999999999999999999999999999996543
No 163
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=74.87 E-value=9.6 Score=32.43 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=42.2
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
+...-++|+.+|...+.+ ...+|++...++...+-..+.+|.+.|||.-
T Consensus 41 lt~~~~~iL~~l~~~~~~-t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r 89 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAM-MITRLAKLSLMEQSRMTRIVDQMDARGLVTR 89 (155)
T ss_dssp CCHHHHHHHHHHSSCSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 334456788888777777 9999999999999999999999999999954
No 164
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=74.87 E-value=5.3 Score=33.40 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 33 G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+++|..+|+..+++|++.|++.|-.|.+.|+|.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~ 57 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVK 57 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 579999999999999999999999999999997
No 165
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=74.85 E-value=4.9 Score=34.27 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=44.9
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 444 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw 444 (523)
+...-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-+.-|. ..|..++.
T Consensus 39 lt~~q~~iL~~l~~~~~~-~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~---D~R~~~~~ 100 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQ-TLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQS---DKRQLIIT 100 (149)
T ss_dssp CCHHHHHHHHHHHHSSSE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC------------CEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCC---Ccceeeee
Confidence 344567888888888887 999999999999999999999999999996543333 24544443
No 166
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=74.82 E-value=20 Score=29.01 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHhcCCCc--HHHHHhhc-CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLT--RQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~lt--l~~l~~~t-~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|+..-.|...|. .|+.+ +.+|.+.. +++++.+-.-|-.|.++|+|. -... ..++|++...+
T Consensus 26 ~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~-r~~~------r~~~y~LT~~G 89 (111)
T 3df8_A 26 KKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVE-RRSG------QITTYALTEKG 89 (111)
T ss_dssp STTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEE-EEES------SSEEEEECHHH
T ss_pred CccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEE-Eeec------CcEEEEECccH
Confidence 344556666665 88888 99999999 899999999999999999998 3322 13689987765
No 167
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.66 E-value=11 Score=31.54 Aligned_cols=47 Identities=9% Similarity=0.279 Sum_probs=41.6
Q ss_pred hHHHHHHHHh-hCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 383 AYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 383 a~RI~r~L~~-k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
-++|+..|.. .+.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 37 ~~~iL~~l~~~~~~~-~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDV-TPSELAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHTTSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 3678888877 7777 999999999999999999999999999996643
No 168
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=74.46 E-value=4.1 Score=35.13 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~ 68 (523)
+.=.+|...|...|+.|..+|++.++++...|+.-|-.|.+.|+|..+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3445788888889999999999999999999999999999999997443
No 169
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=74.07 E-value=5 Score=33.79 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=30.2
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 35 LTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 35 ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.|..+|+..++++...|..+|-.|++.|+|.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 6999999999999999999999999999998
No 170
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.06 E-value=16 Score=30.59 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
...-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-
T Consensus 30 t~~q~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 30 NYNLFAVLYTLATEGSR-TQKHIGEKWSLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp CHHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 34567888888888887 9999999999999999999999999999964
No 171
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=73.96 E-value=7.1 Score=33.52 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=50.3
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecC-C---CCceEEEEEE-EchH
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVT-G---ARQSQFLLWK-VNRQ 449 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~-~---~~~~t~~lw~-v~~~ 449 (523)
.-.+|+++|...+.+ ...+|++...++...++..+.+|.+.|+|.-....-. . .+-..++.|. ++..
T Consensus 8 ~~~~iL~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~~~~~~~~ 79 (150)
T 2w25_A 8 IDRILVRELAADGRA-TLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPS 79 (150)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEESCTT
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChhHcccceEEEEEEEEcCCC
Confidence 345889999877887 9999999999999999999999999999954332221 1 2334556666 6654
No 172
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=73.92 E-value=12 Score=32.67 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=40.8
Q ss_pred CchHHHHHHHHh-hCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 381 RDAYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 381 ~~a~RI~r~L~~-k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
..-++|+..|.. .+.+ ...+|++...++...+-..+.+|.+.|||.-+
T Consensus 53 ~~q~~vL~~L~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQ-SQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp HHHHHHHHHHHHSCSSE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHCCCHhhHHHHHHHHHHCCCEEee
Confidence 445678888866 4556 99999999999999999999999999999654
No 173
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=73.90 E-value=7.1 Score=32.12 Aligned_cols=78 Identities=6% Similarity=0.084 Sum_probs=57.0
Q ss_pred HHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhchhhHHHHHHHHhh
Q 009896 27 ECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD 106 (523)
Q Consensus 27 ~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p~~i~~i~~~~G 106 (523)
..|+.+|+-+++.|...|++|.+.++..|..|-+.++..-|.-. |...+.-||.+.-=+++.+-.+-.=+..|+...|
T Consensus 26 a~lId~~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~~FvQ~--G~R~n~GyY~I~dWG~idk~Wv~~~~~~i~~~L~ 103 (117)
T 3ke2_A 26 AHLMDDARHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQD--GERHNAGYYRIRTWGPISSAWMDTHVDEVKSLLG 103 (117)
T ss_dssp HHHHHHSCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEEEEECC--TTCCSCCEEEEEECTTBCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEEEEEec--cccCCCccEEEeecCccCHHHHHHHHHHHHHHhC
Confidence 45677799999999999999999999999999999988756543 2112335888866666666555555555555554
No 174
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.74 E-value=4.5 Score=34.81 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
.+.-.+|...|...|+.|..+|++.+++++..|+.-|-.|...|++..+
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445578889999999999999999999999999999999999999733
No 175
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=73.73 E-value=3.2 Score=32.69 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=41.7
Q ss_pred HHhhhchhHHH--HHHHHHhcC-CCcHHHHHhhcCCCHHH-HHHHHHHHHhhcccc
Q 009896 14 ITNHFGDLVAK--VCECLLRKG-PLTRQNVKRYTELSDEQ-VKNALLVLIQQNCVQ 65 (523)
Q Consensus 14 v~~~FG~~v~~--V~~~Ll~~G-~ltl~~l~~~t~l~~~~-vr~aL~vLiQhn~V~ 65 (523)
+...||.+... +...|..+| ++|..+|++.+++++.. |-..|-.|.+.|+|.
T Consensus 7 l~~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 7 LRLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GGSBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34456655432 344555677 89999999999999999 999999999999998
No 176
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.56 E-value=4.2 Score=35.54 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
+.-.+|...|...|++|..+|++.++++...|+.-|-.|.+.|+|..+
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 344578888989999999999999999999999999999999999733
No 177
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=73.36 E-value=4 Score=35.09 Aligned_cols=45 Identities=7% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
.+|...|...|+.|..+|++.+++++..|..-|-.|.+.|+|.-+
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 467788888899999999999999999999999999999999743
No 178
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=73.06 E-value=4.5 Score=34.89 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~ 68 (523)
+.=.+|...|...|+.|..+|++.+++++..|+.-|-.|.+.|++.-+.
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEE
Confidence 4445788889899999999999999999999999999999999998433
No 179
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=72.94 E-value=0.23 Score=49.93 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhc
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVR 93 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR 93 (523)
.+.-++|..+|+.+|+.|..+|++.+++|.+.|..+|-.|.+.|+|. ..... ...|+-+.++.++.+++
T Consensus 17 s~~ea~vY~~Ll~~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~-~~~g~-----p~~y~av~p~~~l~~l~ 85 (342)
T 3qph_A 17 TKYEILTYWTLLVYGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVT-EIEGT-----PKVYAAYSPRIAFFRFK 85 (342)
T ss_dssp HHHTTSCSHHHHHHHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEE-EECCT-----TCEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-EEcCc-----eeEEEEcCHHHHHHHHH
Confidence 36667889999999999999999999999999999999999999998 33221 23466667777766654
No 180
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=72.93 E-value=16 Score=30.86 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+.--.|..+| ..|++|..+|++.+++++..|-..+-.|.+.|+|.
T Consensus 38 ~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 38 AEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3344577888 89999999999999999999999999999999998
No 181
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.86 E-value=4 Score=35.25 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE-EEEec-CC--CCceEEEEEEEchH
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM-EKLVV-TG--ARQSQFLLWKVNRQ 449 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l-QEvpk-~~--~~~~t~~lw~v~~~ 449 (523)
-.+|+++|...+.+ .-.+|++...++...++..+.+|.+.|+|.- .-+.. .. .+...|+.|.++..
T Consensus 9 ~~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~ 78 (151)
T 2cyy_A 9 DKKIIKILQNDGKA-PLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAG 78 (151)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcc
Confidence 35789999888887 9999999999999999999999999999942 21111 11 23346778888854
No 182
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=72.78 E-value=4.2 Score=32.24 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHHHHHhcC--CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 23 AKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 23 ~~V~~~Ll~~G--~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
-.|..+|...| .++-.+|...++++...|-.+|-.|.+.|+|.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45778888755 79999999999999999999999999999997
No 183
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=72.52 E-value=16 Score=31.22 Aligned_cols=53 Identities=23% Similarity=0.443 Sum_probs=43.6
Q ss_pred HHcCC--chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 377 KRYGR--DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 377 ~~~G~--~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
..+|- .-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 43 ~~~~lt~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 43 DRYGMAIPEWRVITILALYPGS-SASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHCCCHHHHHHHHHHHHSTTC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 33454 456788888777777 999999999999999999999999999996543
No 184
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=72.38 E-value=4.3 Score=32.68 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 106 DQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 106 G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
++.-..|+..|..+|.++..+|.+.+..+. ..+...+...+.+|.+.|||.+.+
T Consensus 34 T~~e~~VL~~L~~~~~~t~~eL~~~l~~~~----~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 34 SNAELIVMRVIWSLGEARVDEIYAQIPQEL----EWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CCSCSHHHHHHHHHSCEEHHHHHHTCCGGG----CCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHhccc----CCCHhhHHHHHHHHHHCCCEEEEe
Confidence 345567889999999999999998865421 135788999999999999999974
No 185
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=72.38 E-value=31 Score=28.09 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=40.8
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcC----CCcccHHHHHHHHhhcccceEEE
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTF----VEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~am----i~~k~~R~~L~~L~~~g~v~lQE 430 (523)
.=..|+.+|..++.+ ..++|++... ++...+..+|.+|.+.|||.-..
T Consensus 11 ~q~~vL~~L~~~~~~-t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSV-SANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHSSSE-EHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 345788999888887 9999999987 47889999999999999996643
No 186
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.31 E-value=5.4 Score=30.42 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHc--CcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 107 QQCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 107 ~~a~~I~~~lL~~--G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
+.-..|++.|..+ |++++.++.+.+.... ...+...+...+..|.+.|+|.+++
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 4456778777766 7999999999875432 1347888999999999999999985
No 187
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=72.16 E-value=7.2 Score=32.75 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=42.7
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
+...-++|+..|..++.+ ...+|++...++...+-.++.+|.+.|||.-+.-|
T Consensus 34 lt~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKL-NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp CCHHHHHHHHHSCTTCEE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCHHHHHHHHHHHHcCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCC
Confidence 334456777777666777 99999999999999999999999999999765433
No 188
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=71.74 E-value=3.4 Score=34.13 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhc--CCCcccHHHHHHHHhhcccceE
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTT--FVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~a--mi~~k~~R~~L~~L~~~g~v~l 428 (523)
-.+|+.+|...|.+ ...+|++.. -++...+++.|.+|.+.|+|+-
T Consensus 15 d~~IL~~L~~~g~~-s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 15 DDRILEIIHEEGNG-SPKELEDRDEIRISKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp HHHHHHHHHHHSCB-CHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEe
Confidence 36899999888988 999999999 9999999999999999999965
No 189
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=71.65 E-value=7.4 Score=29.58 Aligned_cols=54 Identities=7% Similarity=0.227 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 106 DQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 106 G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
++.-..|+..|..+|.++..+|.+.+.... ..+...+...+..|.+.|||.+.+
T Consensus 8 t~~e~~vL~~L~~~~~~t~~ei~~~l~~~~----~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 8 SDAELEVMKVIWKHSSINTNEVIKELSKTS----TWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp CHHHHHHHHHHHTSSSEEHHHHHHHHHHHS----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhcC----CccHHHHHHHHHHHHHCCCeEEEe
Confidence 344567888888899999999999875421 125788999999999999999975
No 190
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=71.36 E-value=6.6 Score=33.15 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEE---ecCC-CCceEEEEEEEchH
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL---VVTG-ARQSQFLLWKVNRQ 449 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEv---pk~~-~~~~t~~lw~v~~~ 449 (523)
-.+|++.|...+.+ ...+|++...++...++..|.+|.+.|+|.-.-. |+.- -+-..+..|.+...
T Consensus 6 ~~~il~~L~~~~~~-~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~ 75 (141)
T 1i1g_A 6 DKIILEILEKDART-PFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPE 75 (141)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGG
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECch
Confidence 35788888777788 9999999999999999999999999999952211 1111 23355777777653
No 191
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=71.05 E-value=15 Score=31.26 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=46.2
Q ss_pred hhHHHHHHHH-HhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECL-LRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~L-l~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+| ...|++|..+|++..++++..|...|-.|.+.|+|.-...+. + +...++.+...+
T Consensus 47 ~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~-d--~R~~~~~lT~~G 112 (160)
T 3boq_A 47 LAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSAD-D--RRSFSAKLTDAG 112 (160)
T ss_dssp HHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-----------CEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCC-C--CCeEEEEEChhH
Confidence 3444677777 467899999999999999999999999999999998333322 1 223466665554
No 192
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=70.84 E-value=18 Score=28.93 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=48.0
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHH
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 450 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~ 450 (523)
..-.+|+.+|. ++.+ .-.+|++...++...+...|..|.+.|+|..... ++ ...|+++.+.
T Consensus 26 ~~r~~IL~~L~-~~~~-~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~------gr-~~~y~l~~~~ 86 (106)
T 1r1u_A 26 YNRIRIMELLS-VSEA-SVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ------GQ-SMIYSLDDIH 86 (106)
T ss_dssp HHHHHHHHHHH-HCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEESSHH
T ss_pred HHHHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe------CC-EEEEEEChHH
Confidence 33468898886 6777 9999999999999999999999999999976531 12 3456677554
No 193
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=70.67 E-value=5.3 Score=35.02 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
=.+|...|...|++|..+|++.+++++..|+.-|-.|.+.|++.
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 35788899999999999999999999999999999999999998
No 194
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=70.49 E-value=40 Score=29.80 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHh--cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechh
Q 009896 19 GDLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFD 86 (523)
Q Consensus 19 G~~v~~V~~~Ll~--~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~ 86 (523)
.+.--.|..+|.. .|++|..+|++.+++++..|-..|-.|.+.|+|.-...+. + +...++.+-..
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~-D--rR~~~l~LT~~ 106 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPH-D--KRAINVKVTDL 106 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS-C--SSCEEEEECHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCC-C--CCeeEEEECHH
Confidence 3444456666765 6799999999999999999999999999999998333332 2 22345555433
No 195
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.48 E-value=12 Score=31.74 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=44.4
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
+...-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-..
T Consensus 42 lt~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPK-KMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp SBHHHHHHHHHHHHHCCB-CHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 345567889999888877 999999999999999999999999999997643
No 196
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=70.35 E-value=22 Score=29.96 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhccccc
Q 009896 20 DLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~ 66 (523)
..--.|..+|..+| ++|..+|++.+++++..|-..+-.|.+.|+|.-
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVR 86 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEe
Confidence 33445556665554 789999999999999999999999999999983
No 197
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=70.24 E-value=5.6 Score=35.08 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=42.3
Q ss_pred CchHHHHHHHHhh-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 381 RDAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 381 ~~a~RI~r~L~~k-~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.-|+|++-.|..+ +..+.-++|++..-+|..-+++++.+|.+.|||+-.
T Consensus 12 ~yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 12 SVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4688999988754 455599999999999999999999999999999654
No 198
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=69.98 E-value=2.6 Score=36.42 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=42.8
Q ss_pred cCCchHHHHHHHHhh--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 379 YGRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k--~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+.-|+|++-.|..+ +..+.-++|++..-+|.+-++++|.+|.+.|+|..
T Consensus 9 ~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s 60 (143)
T 3t8r_A 9 KGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRS 60 (143)
T ss_dssp HHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEe
Confidence 456688999999754 24559999999999999999999999999999954
No 199
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=69.84 E-value=13 Score=30.84 Aligned_cols=82 Identities=9% Similarity=0.126 Sum_probs=55.4
Q ss_pred chHHHHHHHHhh--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHHHHHHHHHHH
Q 009896 382 DAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEM 459 (523)
Q Consensus 382 ~a~RI~r~L~~k--~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~~~~~~l~~~ 459 (523)
.-++|+..|... +.+ ..++|++...++...+-.++.+|.+.|||.-..-| ...|..+++-.+ . =..+++.+
T Consensus 38 ~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~---~D~R~~~i~LT~-~--G~~~~~~~ 110 (127)
T 2frh_A 38 EEFAVLTYISENKEKEY-YLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE---HDERTVLILVNA-Q--QRKKIESL 110 (127)
T ss_dssp HHHHHHHHHHHTCCSEE-EHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS---SSSCCCEEECCS-H--HHHHHHHH
T ss_pred HHHHHHHHHHhccCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC---CCCCeeEEEECH-H--HHHHHHHH
Confidence 346788888776 667 99999999999999999999999999999532222 345655554322 2 23444455
Q ss_pred HHHHHHHHHHH
Q 009896 460 FHAALNLSLRV 470 (523)
Q Consensus 460 ~k~~~nl~~R~ 470 (523)
...+...+...
T Consensus 111 ~~~~~~~~~~~ 121 (127)
T 2frh_A 111 LSRVNKRITEA 121 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 200
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.71 E-value=5.4 Score=35.44 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=51.9
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE-EEEec-CC--CCceEEEEEEEchH
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM-EKLVV-TG--ARQSQFLLWKVNRQ 449 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l-QEvpk-~~--~~~~t~~lw~v~~~ 449 (523)
...-.+|++.|...+.+ .-.+|++...++...++..|.+|.+.|+|.- .-+.. .. .+-..|+.|.++..
T Consensus 26 d~~d~~IL~~L~~~~~~-s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~~ 98 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKA-PLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAG 98 (171)
T ss_dssp CHHHHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECcc
Confidence 33445899999888888 9999999999999999999999999999942 21111 11 23346777888854
No 201
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=69.58 E-value=6.9 Score=33.66 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=42.8
Q ss_pred hhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+-.+...|...|...|.++..+|.+..+++...|..+|-.|.+.|+|.
T Consensus 37 ~~~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~ 85 (155)
T 2h09_A 37 LIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIE 85 (155)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 3455666777777778999999999999999999999999999999986
No 202
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=69.04 E-value=11 Score=31.09 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=46.2
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchH
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 449 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~ 449 (523)
.-.+|+++|. .|.+ .-.+|++...++...+...|..|.+.|+|..... ++ ...|+++.+
T Consensus 22 ~r~~IL~~L~-~~~~-~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~------gr-~~~y~l~~~ 80 (118)
T 2jsc_A 22 TRCRILVALL-DGVC-YPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE------GR-QVRYALADS 80 (118)
T ss_dssp HHHHHHHHHH-TTCC-STTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC------SS-SEEEEESSH
T ss_pred HHHHHHHHHH-cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE------CC-EEEEEEChH
Confidence 3467898885 5677 8899999999999999999999999999966431 22 245677765
No 203
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=68.72 E-value=5.4 Score=35.09 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred cCCchHHHHHHHHhh--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 379 YGRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k--~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.+.-|+|++-.|..+ +..+..++|++..-+|.+-++++|.+|.+.|+|...
T Consensus 25 ~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 25 KGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 355688999888754 344599999999999999999999999999999654
No 204
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=68.42 E-value=20 Score=27.96 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=42.3
Q ss_pred chHHHHHHHHhhCCCcchhhh----hhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 382 DAYRIFRLLSKSGRLLETDKI----SDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i----~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
.-++|+..|...+.+ ...+| ++...++...+-..+.+|.+.|||.-..-|
T Consensus 9 ~q~~iL~~l~~~~~~-~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 9 PEAIVLAYLYDNEGI-ATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp HHHHHHHHHTTCTTC-BHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHcCCc-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 446788888777777 99999 899999999999999999999999665444
No 205
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=68.32 E-value=7.4 Score=33.42 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHhc---CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 19 GDLVAKVCECLLRK---GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 19 G~~v~~V~~~Ll~~---G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++.+=++.-+|..+ ++.|..+|+...++|++-+++.|-.|.+.|+|.
T Consensus 10 ~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 10 GRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp HHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEE
Confidence 33444455555543 368999999999999999999999999999997
No 206
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=68.01 E-value=33 Score=29.79 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=69.9
Q ss_pred HHHHHHhhhchhHHHHHHHHHhc--CCCcHHHHHhhcC-CCHHHHHHHHHHHHhhcccccccccCC--CCCCcceEEEec
Q 009896 10 AVHVITNHFGDLVAKVCECLLRK--GPLTRQNVKRYTE-LSDEQVKNALLVLIQQNCVQAFTTEQP--DGPKANTQYVVL 84 (523)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~--G~ltl~~l~~~t~-l~~~~vr~aL~vLiQhn~V~~~~~~~~--~~~~~~~~Y~~~ 84 (523)
|.....-.-++.=..|...|+.+ |..|+.+|....+ ++...|..-|-.|...|+|.....+.. +..+...+|.+.
T Consensus 19 ~~~~~~~l~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT 98 (151)
T 3u1d_A 19 ELERRRFVLHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVT 98 (151)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEEC
T ss_pred HHHHHHHhcchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEEC
Confidence 44455555667778899999987 4589999998887 999999999999999999985543321 112345689887
Q ss_pred hhhHHHHhchhhHHHHHHHHhhHHHH-HHHHHHHHcCcCC
Q 009896 85 FDNILHRVRFAKFLTILSQEFDQQCV-ELVQGLLEHGRLT 123 (523)
Q Consensus 85 ~~~il~rlR~p~~i~~i~~~~G~~a~-~I~~~lL~~G~~~ 123 (523)
..+.-. | . .|...++ ..+..|-..+.-|
T Consensus 99 ~~Gr~~---l-------~-~y~~la~~~alr~l~~~v~~t 127 (151)
T 3u1d_A 99 GEGIAL---L-------R-AVSMYEEAAVWRSVYEQMERT 127 (151)
T ss_dssp HHHHHH---H-------H-HTTCSTHHHHTHHHHHHSCCC
T ss_pred HHHHHH---H-------H-HhHHHhHHHHHHHHHHHhhcc
Confidence 766221 1 1 2444333 6666666666433
No 207
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=68.00 E-value=42 Score=26.38 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhchhhHHH
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLT 99 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p~~i~ 99 (523)
+++..|-.++. .| .+..+|+..++++++.++.-|-.|...|+|. ... .-|.+-..+--..-.+-.+..
T Consensus 8 eIi~~IL~~i~-~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~-~~~---------~~~~LT~kG~~~l~~l~~~~~ 75 (95)
T 1r7j_A 8 EIIQAILEACK-SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR-QEG---------KQYMLTKKGEELLEDIRKFNE 75 (95)
T ss_dssp HHHHHHHHHHT-TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EET---------TEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE-EEC---------CeeEEChhHHHHHHHHHHHHH
Confidence 34555555554 57 9999999999999999999999999999997 332 137777776555545555555
Q ss_pred HHH
Q 009896 100 ILS 102 (523)
Q Consensus 100 ~i~ 102 (523)
...
T Consensus 76 ~l~ 78 (95)
T 1r7j_A 76 MRK 78 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 208
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=67.72 E-value=24 Score=28.29 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=44.2
Q ss_pred HHHHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 375 VSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 375 v~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
.+.--...-.+|+.+|. .|.+ .-.+|++...++...+...|..|.+.|+|....
T Consensus 19 ~~al~~~~r~~IL~~L~-~~~~-s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 19 GKALANGRRLQILDLLA-QGER-AVEAIATATGMNLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHHHTTSTTHHHHHHHT-TCCE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHH-cCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 33333445578999885 5777 999999999999999999999999999997653
No 209
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=67.68 E-value=24 Score=32.91 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 24 ~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.|..+|...+ ++|+.+|.+.++++.+.+..-|-.|.++|+|.
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~ 52 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVE 52 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4556666665 79999999999999999999999999999997
No 210
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=66.74 E-value=8.5 Score=34.09 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
+.-.+|...|...|+.|..+|++.+++++..|+.-|-.|.+.|+|.-+
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 444578899999999999999999999999999999999999999633
No 211
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=66.70 E-value=11 Score=34.20 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=44.6
Q ss_pred hhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
...+.-.+|...|. .|++|..+|++.+++++..|..-|-.|.+.|+|..+
T Consensus 17 l~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35567778888887 799999999999999999999999999999999855
No 212
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=66.52 E-value=37 Score=29.32 Aligned_cols=64 Identities=6% Similarity=-0.002 Sum_probs=44.6
Q ss_pred hHHHHHHHHHh-cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 21 LVAKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 21 ~v~~V~~~Ll~-~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.--.|..+|.. .|++|..+|++.++++...|-..|-.|.+.|+|.-...+. + +...++.+-..+
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~-D--rR~~~l~LT~~G 118 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCAS-D--RRAKRIKLTEKA 118 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----------CEEEECGGG
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCC-C--CCeeEEEECHHH
Confidence 33456667776 6789999999999999999999999999999998333222 2 223456554443
No 213
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=66.20 E-value=8.6 Score=30.20 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=39.7
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
...-.+|+.+| .+.+ .-.+|++..-++...++..|..|.+.|+|.-
T Consensus 30 ~~~r~~Il~~L--~~~~-~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 30 NPVRRKILRML--DKGR-SEEEIMQTLSLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp CHHHHHHHHHH--HTTC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHH--cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 33446788888 5677 9999999999999999999999999999964
No 214
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=65.76 E-value=11 Score=31.59 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=39.1
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
-.+|+..|...+ + ...+|++...++...+...+.+|.+.|||.-+.
T Consensus 40 ~~~iL~~l~~~~-~-t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 40 QEHILMLLSEES-L-TNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHTTCC-C-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 357888886766 5 999999999999999999999999999996533
No 215
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=65.64 E-value=4 Score=35.10 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 427 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~ 427 (523)
.+|++.|...+.+ ...+|++...++...++..+.+|.+.|+|.
T Consensus 6 ~~il~~L~~~~~~-~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 6 LRILKILQYNAKY-SLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHTTCTTS-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 5788888777777 999999999999999999999999999995
No 216
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=65.54 E-value=16 Score=33.77 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=48.5
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEech
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLF 85 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~ 85 (523)
.....+|.+.+-..|..|..+|.+..+.++...+..|-.+++.|+++ .....+ ..+|..|.
T Consensus 153 ~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~-~D~~~e-----g~~y~pn~ 213 (218)
T 3cuq_B 153 EEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLC-RDDSVE-----GLRFYPNL 213 (218)
T ss_dssp GGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EEESSS-----CEEEEECG
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEE-EECCCC-----ceEEehhh
Confidence 34567777777778999999999999999999999999999999997 333221 25777664
No 217
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=65.50 E-value=10 Score=28.92 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHHHhh-----CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 385 RIFRLLSKS-----GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 385 RI~r~L~~k-----~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.|+.+|... |.-..-.+|++...++...+|.-|..|.+.|+|.-
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 456666555 45559999999999999999999999999999955
No 218
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=65.44 E-value=20 Score=29.24 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=47.7
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchH
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 449 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~ 449 (523)
.+.-.+|+++|. .|.+ .-.+|++...++...+...|..|.+.|+|..... ++ ..+|+++.+
T Consensus 17 ~~~R~~Il~~L~-~~~~-~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~------gr-~~~y~l~~~ 77 (118)
T 3f6o_A 17 DPTRRAVLGRLS-RGPA-TVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ------GR-VRTCAIEKE 77 (118)
T ss_dssp SHHHHHHHHHHH-TCCE-EHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEECSH
T ss_pred CHHHHHHHHHHH-hCCC-CHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec------CC-EEEEEECHH
Confidence 344578899886 5777 9999999999999999999999999999976433 12 233666654
No 219
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=65.27 E-value=8.4 Score=34.14 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=45.2
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccccc
Q 009896 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (523)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~ 68 (523)
..+.=.+|...|...|+.|..+|++..++++..|+.-|-.|...|+|..+.
T Consensus 25 ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeee
Confidence 445566889999999999999999999999999999999999999997443
No 220
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=65.24 E-value=16 Score=30.78 Aligned_cols=47 Identities=4% Similarity=0.171 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccc
Q 009896 20 DLVAKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 20 ~~v~~V~~~Ll~~--G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~ 66 (523)
+.--.|..+|..+ |++|..+|++.+++++..|-..+-.|.+.|+|.-
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r 89 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIER 89 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEe
Confidence 3445677788887 8999999999999999999999999999999983
No 221
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=65.04 E-value=11 Score=32.37 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 107 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 107 ~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
..=..|++.|..++++++.++.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 19 ~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 19 PQRQLVLEAVDTLEHATPDDILGEVRKTAS---GINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHHTTCT---TCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhCC---CCCHhHHHHHHHHHHHCCcEEEEE
Confidence 345678888888899999999998865422 357889999999999999999985
No 222
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=64.92 E-value=4.6 Score=34.93 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=41.3
Q ss_pred CchHHHHHHHHhh-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 381 RDAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 381 ~~a~RI~r~L~~k-~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.-|+|++-.|..+ +..+.-++|++..-+|.+-+++++.+|.+.|+|.-
T Consensus 14 ~yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s 62 (149)
T 1ylf_A 14 SIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYV 62 (149)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4588999998753 34458999999999999999999999999999864
No 223
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=64.75 E-value=8.2 Score=36.47 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=44.4
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccc
Q 009896 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~ 66 (523)
..+..-.|...|..+|++|+.+|++.++++.+.|...|-.|.+.|+|..
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQ 198 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4466677888888999999999999999999999999999999999983
No 224
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.71 E-value=19 Score=28.04 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=37.3
Q ss_pred HHHHHHHHhhC-CCcchhhhhhhcCCCccc-HHHHHHHHhhcccce
Q 009896 384 YRIFRLLSKSG-RLLETDKISDTTFVEKKD-APKILYKLWKDGYLL 427 (523)
Q Consensus 384 ~RI~r~L~~k~-~l~eek~i~~~ami~~k~-~R~~L~~L~~~g~v~ 427 (523)
+.++.++..++ .+ ...+|++...++... +-..+.+|.+.|||.
T Consensus 18 l~~L~~l~~~~~~~-t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 18 LPTLLEFEKKGYEP-SLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCCC-CHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34555666666 57 999999999999999 999999999999998
No 225
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=64.54 E-value=6.9 Score=33.30 Aligned_cols=47 Identities=13% Similarity=0.279 Sum_probs=41.7
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.-++|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+
T Consensus 48 ~~~~iL~~l~~~~~~-t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 48 PQYLVMLVLWETDER-SVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCc-CHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 346788888777777 99999999999999999999999999999654
No 226
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=64.35 E-value=8.1 Score=32.67 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=36.5
Q ss_pred CCchHHHHHHHHhh--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 380 GRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 380 G~~a~RI~r~L~~k--~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
...-++|+..|... +.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 40 t~~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 40 NSQQGRMIGYIYENQESGI-IQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp CHHHHHHHHHHHHHTTTCC-CHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CHHHHHHHHHHHhCCCCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 34447888888777 677 999999999999999999999999999996543
No 227
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=64.23 E-value=7.9 Score=36.31 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
...+.-+++.+|+.|..+|+..+++|++.|...|--|..+++|.
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~ 209 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVK 209 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE
Confidence 56666777889999999999999999999999999999999996
No 228
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=63.76 E-value=46 Score=27.80 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=41.9
Q ss_pred hchhHHHHHHHHHh-cCCCcHHHHHhhcC----CCHHHHHHHHHHHHhhccccc
Q 009896 18 FGDLVAKVCECLLR-KGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 18 FG~~v~~V~~~Ll~-~G~ltl~~l~~~t~----l~~~~vr~aL~vLiQhn~V~~ 66 (523)
.++.=..|..+|.. .|++|..+|....+ +++..|...|-.|.+.|+|..
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34444568888888 59999999999986 899999999999999999983
No 229
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=63.50 E-value=53 Score=27.13 Aligned_cols=65 Identities=6% Similarity=-0.033 Sum_probs=49.2
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.+.--.|..+|..+|. |..+|++.+++++..|-..|-.|.+.|+|.-...+.+ +...++.+-..+
T Consensus 36 t~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D---~R~~~~~LT~~G 100 (144)
T 3f3x_A 36 SYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKD---RRIVIVEITPKG 100 (144)
T ss_dssp CHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE---EEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCC---CceEEEEECHHH
Confidence 3445578888888888 9999999999999999999999999999983333221 223466665544
No 230
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=63.21 E-value=36 Score=27.52 Aligned_cols=48 Identities=13% Similarity=0.290 Sum_probs=40.9
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcC----CCcccHHHHHHHHhhcccceEEE
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTF----VEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~am----i~~k~~R~~L~~L~~~g~v~lQE 430 (523)
.-..|+.+|...+.+ ...+|++... ++...+..+|.+|.+.|||.-..
T Consensus 11 ~~~~vL~~l~~~~~~-t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 11 AEWEVMNIIWMKKYA-SANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHHHHSSE-EHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCc-CHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 346788888777777 9999999988 77999999999999999997653
No 231
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=62.26 E-value=12 Score=32.80 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 33 G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++.|..+|+...++|++-+++.|..|.+.|+|.
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~ 75 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVK 75 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 478999999999999999999999999999998
No 232
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=62.14 E-value=58 Score=25.87 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEEE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKL 431 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~a-mi~~k~~R~~L~~L~~~g~v~lQEv 431 (523)
|.-..+|+..|. .|.+ ...+|++.. .++...+-..|.+|.+.|+|+-...
T Consensus 13 ~~~~~~IL~~L~-~~~~-~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 13 GKWKXVILXHLT-HGKK-RTSELKRLMPNITQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp STTHHHHHHHHT-TCCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CccHHHHHHHHH-hCCC-CHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 334467888885 6778 999999998 9999999999999999999975433
No 233
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=61.67 E-value=24 Score=30.47 Aligned_cols=48 Identities=6% Similarity=-0.092 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 20 DLVAKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 20 ~~v~~V~~~Ll~~--G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
..--.|..+|..+ +++|..+|+..+++++..|-..|-.|.+.|+|.-.
T Consensus 46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 46 AQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 4445577778776 49999999999999999999999999999999833
No 234
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=60.78 E-value=16 Score=31.54 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=46.1
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchH
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 449 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~ 449 (523)
-.+|+++|. ++.+ .-.+|++...++...+...|..|.+.|+|.... . ++. -+|+++..
T Consensus 60 R~~IL~~L~-~~~~-t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~--~----Gr~-~~y~lt~~ 117 (151)
T 3f6v_A 60 RRRLVQLLT-SGEQ-TVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK--D----GRF-RYYRLDPQ 117 (151)
T ss_dssp HHHHHHHGG-GCCE-EHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE--E----TTE-EEEEECHH
T ss_pred HHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--c----CCE-EEEEEChH
Confidence 467888885 6777 999999999999999999999999999997643 1 222 45666654
No 235
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=60.68 E-value=6 Score=37.42 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=45.4
Q ss_pred HcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 378 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 378 ~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.+.....+|+..|..++.+ ...+|++...++...+...|.+|.+.|||+-.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~-s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGT-GITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3556778999999888888 99999999999999999999999999999653
No 236
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=60.53 E-value=69 Score=29.56 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhchhhHHH
Q 009896 21 LVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFLT 99 (523)
Q Consensus 21 ~v~~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p~~i~ 99 (523)
+.+.|=..|+..| ++|+.+|.+.++++...|+.+|--|.+. |...+ .| ... ....+-|.+.--|.|-.
T Consensus 16 l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~-----y~~~~-rG---iel--~~v~~gy~l~T~~e~~~ 84 (219)
T 2z99_A 16 LKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADE-----LTGRD-SG---IDL--RHTSEGWRMYTRARFAP 84 (219)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHH-----HHHTT-CS---EEE--EEETTEEEEEECGGGHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHH-----HhhCC-CC---EEE--EEECCEEEEEEcHHHHH
Confidence 4466667777665 7999999999999999999999999763 11110 00 000 01111111222233333
Q ss_pred HHHH--------HhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 100 ILSQ--------EFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 100 ~i~~--------~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
+++. .+...+-+++..+..+|-+|-.+|-+.-.-. ....+.+|+..|||..+.
T Consensus 85 ~v~~~~~~~~~~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~-----------~~~~v~~Lle~gLI~e~G 145 (219)
T 2z99_A 85 YVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVN-----------VDAVMRTLLARGLITEVG 145 (219)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSC-----------CHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-----------HHHHHHHHHHCCCEEEcc
Confidence 3332 3555566799999999999998886553211 157899999999999874
No 237
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.33 E-value=21 Score=30.55 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhc-CCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEec
Q 009896 20 DLVAKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVL 84 (523)
Q Consensus 20 ~~v~~V~~~Ll~~-G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~ 84 (523)
+-=..|.+.|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-...++ ....|..+
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-----~~~~Y~~~ 87 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGD-----ASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTT-----SCCEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCC-----CceEEECC
Confidence 4445688888864 689999998775 799999999999999999998444432 23678765
No 238
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=60.15 E-value=11 Score=35.44 Aligned_cols=42 Identities=10% Similarity=0.209 Sum_probs=37.2
Q ss_pred HHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 24 ~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.|..+|...+ ++|+.+|.+.++++.+.+..-|-.|.++|+|.
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~ 54 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL 54 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 4556666665 79999999999999999999999999999998
No 239
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=60.10 E-value=6.9 Score=33.02 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=42.3
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
..-++|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-+.-|
T Consensus 40 ~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 40 MTEWRIISVLSSASDC-SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp HHHHHHHHHHHHSSSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 4456888888888877 99999999999999999999999999999665444
No 240
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=59.50 E-value=8.7 Score=32.46 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=30.8
Q ss_pred CCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 395 ~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
+|-.+.+|++.-.++...+|+.+..|..+|+|..
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~ 70 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQELERQEVIIT 70 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 3437889999999999999999999999999965
No 241
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=59.09 E-value=21 Score=27.29 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 19 GDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++.-.+|.++|-.-| ++...+|+..++++.+.|-++|-.|=.-+.|.
T Consensus 18 ~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 456788999998886 88899999999999999999999999999986
No 242
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=59.01 E-value=68 Score=27.17 Aligned_cols=66 Identities=6% Similarity=-0.004 Sum_probs=49.0
Q ss_pred cCCc--hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEc
Q 009896 379 YGRD--AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 447 (523)
Q Consensus 379 ~G~~--a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~ 447 (523)
||-. -++|+..|...+....+.+|++...++...+-.++.+|.+.|||.-+.-| ...|..++.-.+
T Consensus 27 ~gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~---~DrR~~~l~LT~ 94 (151)
T 4aik_A 27 LELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSA---NDRRAKRIKLTE 94 (151)
T ss_dssp GCCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECG
T ss_pred cCCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCC---CCCcchhhhcCH
Confidence 4543 35677777665554488999999999999999999999999999554333 346666665444
No 243
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=58.73 E-value=13 Score=32.81 Aligned_cols=49 Identities=12% Similarity=0.242 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHhhCC---CcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 380 GRDAYRIFRLLSKSGR---LLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~---l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
...-.+|+..|...+. + ...+|++...++...+-..+.+|.+.|||.-+
T Consensus 68 t~~~~~iL~~L~~~~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 68 NAAGWDLLLTLYRSAPPEGL-RPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CHHHHHHHHHHHHHCCSSCB-CHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 3445788888877765 6 99999999999999999999999999999543
No 244
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=58.12 E-value=16 Score=27.74 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=42.1
Q ss_pred HHHHHHHHhc----CCCcHHHHHhhc-CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEe
Q 009896 23 AKVCECLLRK----GPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVV 83 (523)
Q Consensus 23 ~~V~~~Ll~~----G~ltl~~l~~~t-~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~ 83 (523)
++|...|-.. .+.=+.++.... +..++.|++++-.|+.-+-+.||... +.++|-+
T Consensus 6 ~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~leywSSG------STTmygl 65 (78)
T 1ucr_A 6 QKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWSSG------STTMYGL 65 (78)
T ss_dssp HHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEET------TEEEEEE
T ss_pred HHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhcCceEEEecC------CeEEEec
Confidence 4555666443 244578888776 89999999999999999999988874 3577765
No 245
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=57.93 E-value=26 Score=29.85 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHH-cCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009896 107 QQCVELVQGLLE-HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 164 (523)
Q Consensus 107 ~~a~~I~~~lL~-~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~~ 164 (523)
+.=..|++.|.. .+++++.+|.+.+....+ ..+...|-.++..|++.|+|.++..
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFP---NMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCT---TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCChhhHHHHHHHHHHCCCEEEEee
Confidence 445667777776 478999999999865422 3578899999999999999999853
No 246
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=57.48 E-value=9 Score=36.76 Aligned_cols=46 Identities=24% Similarity=0.201 Sum_probs=38.4
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 427 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~ 427 (523)
.+++|+.+|...+.-+.-.+|++...+|...+..+|..|...|||.
T Consensus 31 Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~ 76 (275)
T 3mq0_A 31 RAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA 76 (275)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3678999997765433999999999999999999999999999994
No 247
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=57.44 E-value=13 Score=30.80 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=40.4
Q ss_pred hHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 383 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 383 a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
-.+|+.+|...|.+ .-.+|++...++...+...|..|...|+|..
T Consensus 44 rl~IL~~L~~~~~~-s~~eLa~~l~is~stvs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 44 RAKITYALCQDEEL-CVCDIANILGVTIANASHHLRTLYKQGVVNF 88 (122)
T ss_dssp HHHHHHHHHHSSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 35789888767777 9999999999999999999999999999965
No 248
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=57.34 E-value=85 Score=27.45 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhcC-CCcHHHHHhhcC--CCHHHHHHHHHHHHhh------cccccccccCCCCCCcceEEEechhhHHH
Q 009896 20 DLVAKVCECLLRKG-PLTRQNVKRYTE--LSDEQVKNALLVLIQQ------NCVQAFTTEQPDGPKANTQYVVLFDNILH 90 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G-~ltl~~l~~~t~--l~~~~vr~aL~vLiQh------n~V~~~~~~~~~~~~~~~~Y~~~~~~il~ 90 (523)
++.+.|=..|+..| ++|+.+|.+.++ ++...|+.+|--|.+. ++-. .... + ...+...++..=.
T Consensus 7 ~~~~~iEAlLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l-~~v~--~----gy~l~t~~~~~~~ 79 (162)
T 1t6s_A 7 QLLRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRI-HAIA--G----GYRFLTEPEFADL 79 (162)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEE-EEET--T----EEEEEECGGGHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEE-EEEC--C----EEEEEEcHHHHHH
Confidence 34456667777776 699999999999 9999999999999763 1111 1111 0 1222222221111
Q ss_pred HhchhhHHH-HHHHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 91 RVRFAKFLT-ILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 91 rlR~p~~i~-~i~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
.-+ +.. --...+...+-+++..+..+|-+|-.++-+.-.-. ....+..|+..|||..++
T Consensus 80 v~~---~~~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~-----------~~~~v~~L~e~glI~e~g 139 (162)
T 1t6s_A 80 VRQ---LLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS-----------PDYSIDRLLARGLIEVRG 139 (162)
T ss_dssp HHH---HHSCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC-----------CCSHHHHHHHTTSEEEEE
T ss_pred HHH---HhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-----------HHHHHHHHHHCCCEEEcc
Confidence 111 110 01235666777899999999999998886553221 346889999999998874
No 249
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=57.17 E-value=28 Score=27.35 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 372 ESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 372 e~~v~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
..+..---++.-.+|++.|. .|.+ .-.+|++...++...+...|..|...|+|..
T Consensus 14 ~~~~~~l~~~~r~~Il~~L~-~~~~-~~~ela~~l~is~~tvs~~L~~L~~~Glv~~ 68 (102)
T 3pqk_A 14 ANLLKTLSHPVRLMLVCTLV-EGEF-SVGELEQQIGIGQPTLSQQLGVLRESGIVET 68 (102)
T ss_dssp HHHHHHHCSHHHHHHHHHHH-TCCB-CHHHHHHHHTCCTTHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCHHHHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 33444444455678888884 5777 9999999999999999999999999999965
No 250
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=57.08 E-value=20 Score=27.95 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=40.9
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
+..-.+|+.+|.. |.+ .-.+|++...++...+...|..|.+.|+|.-.
T Consensus 22 ~~~r~~Il~~L~~-~~~-~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 22 NERRLQILCMLHN-QEL-SVGELCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp SHHHHHHHHHTTT-SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHhc-CCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3344678888855 777 99999999999999999999999999999653
No 251
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=56.83 E-value=9.3 Score=32.77 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=41.2
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+.-|+|++-.|.....- .-++|++..-+|.+-++++|.+|.+.|+|.-
T Consensus 7 ~~~yAl~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s 55 (145)
T 1xd7_A 7 RLAVAIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTS 55 (145)
T ss_dssp HHHHHHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 345688999998754333 7889999999999999999999999999954
No 252
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=56.82 E-value=34 Score=27.25 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=41.6
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcC-CCcccHHHHHHHHhhcccceEEEE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTF-VEKKDAPKILYKLWKDGYLLMEKL 431 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~am-i~~k~~R~~L~~L~~~g~v~lQEv 431 (523)
+.-...|+..|. +|.+ ...+|++... ++...+-..|.+|.+.|+|+-...
T Consensus 24 ~~~~~~IL~~L~-~~~~-~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 24 GKWTLLIIFQIN-RRII-RYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp SSSHHHHHHHHT-TSCE-EHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CccHHHHHHHHH-hCCc-CHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 444567888885 6777 9999999995 999999999999999999975443
No 253
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=56.50 E-value=9.6 Score=29.01 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=31.7
Q ss_pred cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 32 ~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+..|..+|++..+++.+.|...|..|..-|.|.
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 4459999999999999999999999999999996
No 254
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=56.47 E-value=18 Score=28.90 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHh-hcCCCHHHHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKR-YTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~-~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+.--.|-..|.++|..|+.+|.. ..+++.+.|-..+=+|++.|+|.
T Consensus 16 ~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 16 EKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 44445667788999999999999 99999999999999999999997
No 255
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.09 E-value=22 Score=29.97 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHc--CcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009896 107 QQCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 164 (523)
Q Consensus 107 ~~a~~I~~~lL~~--G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~~ 164 (523)
+.=..|++.|... +++++.++.+.+....+ ..+...|-.++..|++.|+|.++..
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGE---DVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 3445677777754 69999999999865422 3578899999999999999999853
No 256
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=55.87 E-value=84 Score=25.79 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=33.1
Q ss_pred hcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 31 RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 31 ~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
..|++|+.+|++..+++...|...|-.|.+.|+|.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 36789999999999999999999999999999997
No 257
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=55.28 E-value=24 Score=29.48 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=43.3
Q ss_pred HHHHHHHHhc-CCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEe
Q 009896 23 AKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVV 83 (523)
Q Consensus 23 ~~V~~~Ll~~-G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~ 83 (523)
..|.++|... +.+|..+|.... +++...|-..|-.|.+.|+|.-...++ ..+.|..
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~-----~~~~y~~ 75 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDT-----GESVYRR 75 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTT-----SCEEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCC-----CceEEEe
Confidence 3577777755 589999998775 899999999999999999998444432 2357775
No 258
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=55.10 E-value=22 Score=30.35 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEec
Q 009896 23 AKVCECLLRKGPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVL 84 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~ 84 (523)
..|.++|...+.+|..+|.... ++++..|-.+|-.|.+.|+|.-...++ ....|.++
T Consensus 22 ~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~-----~~~~Y~~~ 83 (145)
T 3eyy_A 22 QLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGH-----GAPTYHLA 83 (145)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGG-----GCEEEEET
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCC-----CceEEEeC
Confidence 3577888887788888886653 689999999999999999998544432 23678764
No 259
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=54.96 E-value=8.3 Score=36.17 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=60.3
Q ss_pred chHHHHHHHHhhC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchH--HHHHHHHHH
Q 009896 382 DAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ--ILWKHVLDE 458 (523)
Q Consensus 382 ~a~RI~r~L~~k~-~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~--~~~~~~l~~ 458 (523)
.+++|+++|...+ .+ .-.+|++...+|...+..+|..|.+.|||.- .+.+ +. |++... .+-..--.+
T Consensus 7 r~l~iL~~l~~~~~~~-s~~ela~~~gl~~stv~r~l~~L~~~G~v~~--~~~~----~~---Y~lg~~~~~lg~~~~~~ 76 (241)
T 2xrn_A 7 RAASIMRALGSHPHGL-SLAAIAQLVGLPRSTVQRIINALEEEFLVEA--LGPA----GG---FRLGPALGQLINQAQTD 76 (241)
T ss_dssp HHHHHHHHHHTCTTCE-EHHHHHHHTTSCHHHHHHHHHHHHTTTSEEE--CGGG----CE---EEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCC----Ce---EEECHHHHHHHhhcccC
Confidence 4778888887655 46 9999999999999999999999999999953 1221 22 233322 121113345
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 009896 459 MFHAALNLSLRVSYELDREKEL 480 (523)
Q Consensus 459 ~~k~~~nl~~R~~~e~~~~k~l 480 (523)
+...+.-.+.++..+....-.|
T Consensus 77 l~~~a~p~l~~L~~~tgetv~L 98 (241)
T 2xrn_A 77 ILSLVKPYLRSLAEELDESVSL 98 (241)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHHCCeEEE
Confidence 6666777777777766555433
No 260
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=54.82 E-value=7.2 Score=32.83 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=41.7
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.-++|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+
T Consensus 41 ~~~~iL~~l~~~~~~-~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 41 PQYLALLLLWEHETL-TVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp HHHHHHHHHHHHSEE-EHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 456788888887777 99999999999999999999999999999653
No 261
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=54.69 E-value=23 Score=27.02 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 107 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 107 ~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
..-+.|+.-.=....++-.+|+..+.+....--..+...|+..+..|++.+||.|.+
T Consensus 11 ~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~ 67 (77)
T 3tdu_C 11 LIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 67 (77)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred eEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCC
Confidence 345667777777888888888877765322111236789999999999999999985
No 262
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=54.67 E-value=7.4 Score=37.00 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHHHHHh-cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 25 VCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 25 V~~~Ll~-~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|.++|.. .+++|+.+|.+.+++|.+.+..-|-.|.++|+|.
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~ 52 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVE 52 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444443 4789999999999999999999999999999997
No 263
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=54.42 E-value=19 Score=32.67 Aligned_cols=65 Identities=6% Similarity=-0.066 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+.--.|..+|..+|++|..+|++.+++++..|-..|-.|.+.|+|.-...+.+ .+ ..++.+-..+
T Consensus 48 ~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~D--rR-~~~l~LT~~G 112 (207)
T 2fxa_A 48 INEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLND--KR-NTYVQLTEEG 112 (207)
T ss_dssp HHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC---------CEEEECHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCC--Cc-eEEEEECHHH
Confidence 33446777888889999999999999999999999999999999983333322 12 3455554443
No 264
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=54.17 E-value=8.7 Score=36.89 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=34.9
Q ss_pred HHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 24 ~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.|.++|...+ ++|+.+|++.+++|.+.+..-|-.|.++|+|.
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~ 76 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA 76 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4556666654 69999999999999999999999999999997
No 265
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=54.16 E-value=17 Score=29.17 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcC----CCHHHHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~----l~~~~vr~aL~vLiQhn~V~ 65 (523)
+.=..|..+|...|++|..+|....+ +++..|...|-.|.+.|+|.
T Consensus 35 ~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 35 NAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp CSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 33346888999999999999999875 67899999999999999998
No 266
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=54.11 E-value=24 Score=28.57 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=44.4
Q ss_pred HHHHHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 374 VVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 374 ~v~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
+.+......-.+|+..|.. +.. ...+|++...++...+...|..|.+.|+|...
T Consensus 25 ~~~~l~~~~~~~il~~L~~-~~~-s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 25 TLQALATPSRLMILTQLRN-GPL-PVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHCCHHHHHHHHHHHH-CCC-CHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHhCCHHHHHHHHHHHH-CCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3333334456789999876 677 99999999999999999999999999999764
No 267
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=54.04 E-value=83 Score=25.14 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEEE
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKL 431 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~a-mi~~k~~R~~L~~L~~~g~v~lQEv 431 (523)
|.-..+|+..|. +|.+ ...+|++.. .++...+-..|.+|.+.|||.-+..
T Consensus 21 ~~~~~~IL~~L~-~~~~-~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~ 71 (112)
T 1z7u_A 21 GKWKLSLMDELF-QGTK-RNGELMRALDGITQRVLTDRLREMEKDGLVHRESF 71 (112)
T ss_dssp STTHHHHHHHHH-HSCB-CHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CccHHHHHHHHH-hCCC-CHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 334567888886 5788 999999999 9999999999999999999976543
No 268
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=53.94 E-value=12 Score=31.49 Aligned_cols=42 Identities=29% Similarity=0.468 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 386 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 386 I~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
|+.++...+.+ ...+|++...++...+...+.+|.+.|||.-
T Consensus 13 i~~l~~~~~~~-~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 13 IYMLIEEKGYA-RVSDIAEALAVHPSSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp HHHHHHHHSSC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhhcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 44555556777 9999999999999999999999999999965
No 269
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=53.73 E-value=47 Score=29.31 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=49.6
Q ss_pred cCCchHHHHHHHHh--hCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEE
Q 009896 379 YGRDAYRIFRLLSK--SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 446 (523)
Q Consensus 379 ~G~~a~RI~r~L~~--k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v 446 (523)
+...-++|+..|.. ++.+ ...+|++...++...+-..+.+|.+.|||.-+.-|. ..|..++.-.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~---DrR~~~l~LT 104 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEET-TLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPH---DKRAINVKVT 104 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS---CSSCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCC---CCCeeEEEEC
Confidence 45666788888865 5567 999999999999999999999999999997654443 3555555433
No 270
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=53.64 E-value=25 Score=29.86 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=42.9
Q ss_pred CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHHHHHHH
Q 009896 395 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHV 455 (523)
Q Consensus 395 ~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~~~~~~ 455 (523)
...+.++||+...++..++-+.|.+|.+.|||.+...... ...++ .++|+..++..+
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~-~g~~~---~~ydL~pL~ekL 106 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQ-NGIKF---EKYSLQPLWGKL 106 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECT-TCCEE---EEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecC-CCceE---EEeeHHHHHHHH
Confidence 3349999999999999999999999999999998776655 22332 344555555443
No 271
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=53.56 E-value=11 Score=35.57 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=40.4
Q ss_pred chHHHHHHHHhhC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 382 DAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 382 ~a~RI~r~L~~k~-~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+++|+.+|...+ .+ .-.+|++...+|...+..+|..|.+.|||.-
T Consensus 9 r~l~iL~~l~~~~~~~-~~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 55 (249)
T 1mkm_A 9 KAFEILDFIVKNPGDV-SVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR 55 (249)
T ss_dssp HHHHHHHHHHHCSSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4678888887665 46 9999999999999999999999999999964
No 272
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=53.30 E-value=30 Score=29.13 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhc--CCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEec
Q 009896 21 LVAKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVL 84 (523)
Q Consensus 21 ~v~~V~~~Ll~~--G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~ 84 (523)
-=..|..+|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-...++ ....|.++
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-----~~~~Y~~~ 84 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDG-----GHAVFELA 84 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSS-----SSCEEEES
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCC-----CceEEEeC
Confidence 334678888865 589999998775 799999999999999999998444322 13578764
No 273
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=53.29 E-value=23 Score=29.63 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHc-CcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009896 108 QCVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 164 (523)
Q Consensus 108 ~a~~I~~~lL~~-G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~~ 164 (523)
.=..|++.|... ++++++++.+.+....+ ..+...+..++..|++.|+|.++..
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRRRGE---NIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 345677777754 68999999999865422 3578899999999999999999853
No 274
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=53.10 E-value=25 Score=30.22 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHc-CcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009896 107 QQCVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 164 (523)
Q Consensus 107 ~~a~~I~~~lL~~-G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~~ 164 (523)
+.=..|++.|..+ +++++.+|.+.+....+ ..+...|-.++..|++.|+|.++..
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDK---NTSISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHST---TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCcEEEEEe
Confidence 4455677777765 78999999999865422 3478899999999999999999853
No 275
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=52.03 E-value=25 Score=29.77 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=31.5
Q ss_pred CCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccc
Q 009896 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 33 G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~ 66 (523)
...|..+|+..+++++..|-..|-.|++.|++.-
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4569999999999999999999999999999983
No 276
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.85 E-value=26 Score=30.68 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHc-CcCCHHHHHHHhhhc--ccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 107 QQCVELVQGLLEH-GRLTLKQMFDRAKSS--EKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 107 ~~a~~I~~~lL~~-G~~~~~~li~~~~~~--~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
..=..|++.|..+ +++|+.++.+.+... .+ ..+...|-.++..|++.|+|.++.
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~---~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDL---NVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGG---CCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4456677777775 899999999988654 22 347889999999999999999984
No 277
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=51.80 E-value=26 Score=31.94 Aligned_cols=51 Identities=20% Similarity=0.081 Sum_probs=44.1
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEe
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
+..-.+|+.+| .+|.+ .-.+|++...++...+-..|..|.+.|+|.-...+
T Consensus 14 ~~~rl~IL~~L-~~~~~-s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 14 NETRRRILFLL-TKRPY-FVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp SHHHHHHHHHH-HHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CHHHHHHHHHH-HhCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 34457889888 56788 99999999999999999999999999999887664
No 278
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=51.66 E-value=19 Score=30.60 Aligned_cols=53 Identities=21% Similarity=0.163 Sum_probs=41.7
Q ss_pred HHHHHHHHHHc-CcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009896 109 CVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 164 (523)
Q Consensus 109 a~~I~~~lL~~-G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~~ 164 (523)
=..|++.|..+ +++++.++.+.+....+ ..+...|..++..|++.|+|.++..
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGD---AVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 35567777664 79999999998865422 3578899999999999999999853
No 279
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=51.54 E-value=1e+02 Score=25.53 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=40.2
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEEE
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKL 431 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~a-mi~~k~~R~~L~~L~~~g~v~lQEv 431 (523)
-...|+..|. +|.+ ...+|++.. .++...+-..|.+|.+.|+|.-...
T Consensus 36 w~l~IL~~L~-~g~~-~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~ 84 (131)
T 1yyv_A 36 WGVLILVALR-DGTH-RFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSY 84 (131)
T ss_dssp HHHHHHHHGG-GCCE-EHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cHHHHHHHHH-cCCC-CHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEec
Confidence 3456787775 7788 999999999 6999999999999999999975443
No 280
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=51.47 E-value=18 Score=31.77 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCC---CcHHHHHhhcCCCHHHHHHHHHHHHhhccccccc
Q 009896 20 DLVAKVCECLLRKGP---LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~---ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~ 68 (523)
+.--.|..+|..+|+ +|..+|++.+++++..|-..|-.|.+.|+|.-..
T Consensus 69 ~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 69 AAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp HHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 444567778887775 9999999999999999999999999999998433
No 281
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=51.35 E-value=17 Score=32.99 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=45.6
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEE
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 446 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v 446 (523)
..-++|+.+|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-| ...|..++.-.
T Consensus 48 ~~q~~iL~~L~~~~~~-t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~LT 109 (207)
T 2fxa_A 48 INEHHILWIAYQLNGA-SISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL---NDKRNTYVQLT 109 (207)
T ss_dssp HHHHHHHHHHHHHTSE-EHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC---------CEEEEC
T ss_pred HHHHHHHHHHHHCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC---CCCceEEEEEC
Confidence 3456788888888887 99999999999999999999999999999544333 33555554433
No 282
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.23 E-value=32 Score=29.50 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=44.9
Q ss_pred HHHHHHHHhc-CCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEec
Q 009896 23 AKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVL 84 (523)
Q Consensus 23 ~~V~~~Ll~~-G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~ 84 (523)
..|..+|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-...++ ....|..+
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-----~~~~Y~~~ 92 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSK-----SGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETT-----TEEEEEES
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCC-----CceEEEec
Confidence 4588888775 689999998775 799999999999999999998444432 24678764
No 283
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=50.92 E-value=22 Score=27.63 Aligned_cols=46 Identities=7% Similarity=-0.068 Sum_probs=37.4
Q ss_pred chhHHHHHHHHHh-cCC---CcHHHHHhhcCCCHHHHHHHHHHHHhhccc
Q 009896 19 GDLVAKVCECLLR-KGP---LTRQNVKRYTELSDEQVKNALLVLIQQNCV 64 (523)
Q Consensus 19 G~~v~~V~~~Ll~-~G~---ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V 64 (523)
.+-.-.|..+|+. .++ +|..+|++.+++++..|-..|-.|.+.|+|
T Consensus 11 ~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 11 KEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred chhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 3444445555554 355 899999999999999999999999999999
No 284
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=50.78 E-value=26 Score=29.46 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHH-cCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 106 DQQCVELVQGLLE-HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 106 G~~a~~I~~~lL~-~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
+..-..|+..|.. +|.++..+|.+.+.... ..+...+...+.+|.+.|||.+.+
T Consensus 8 t~~e~~vL~~L~~~~~~~t~~el~~~l~~~~----~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 8 GDLERAVMDHLWSRTEPQTVRQVHEALSARR----DLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp CHHHHHHHHHHHTCSSCEEHHHHHHHHTTTC----CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhccC----CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4455678888888 59999999999875321 125788999999999999999985
No 285
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=49.80 E-value=20 Score=31.81 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCcHHHHHhhc--------CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 25 VCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t--------~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|-..|. .|+++-.+|.+.. ++++.+|...|-.|.+.|+|.....+.++++ ...+|++-..+
T Consensus 7 iL~lL~-~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~-~r~~Y~lT~~G 75 (179)
T 1yg2_A 7 ILTVLS-TRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKP-DRKVYSITQAG 75 (179)
T ss_dssp HHHHHH-HCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC----------CEEECHHH
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCC-CceEEEeChHH
Confidence 444454 5889999998775 6999999999999999999984433322322 34688887665
No 286
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=49.72 E-value=22 Score=30.51 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=31.6
Q ss_pred CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 33 G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++.|..+|+...++|++.+++.|..|.+.|+|.
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~ 61 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVY 61 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 478999999999999999999999999999997
No 287
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=49.65 E-value=86 Score=25.43 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhc--------CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t--------~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|.+--.|-..| ..|+.+-.+|.+.. ++++..|...|-.|.+.|+|.......++++ ...+|.+-..+
T Consensus 11 g~l~~~IL~~L-~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~-~rk~Y~LT~~G 85 (116)
T 3f8b_A 11 AQTNVILLNVL-KQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGG-RRKYYRLTEIG 85 (116)
T ss_dssp HHHHHHHHHHH-HHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----C-CEEEEEECHHH
T ss_pred chHHHHHHHHH-HhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCC-CceEEEECHHH
Confidence 44444455544 46888888887664 7899999999999999999984332211222 34688887765
No 288
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=49.49 E-value=13 Score=39.93 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhccC-----CCCCCCCCeEEEehHHHHHHHHHH-HHHH-HH-HHHcCCch--HHHHHHHHhhCCCcch
Q 009896 330 MTLDHVRASLVQLGEL-----SFVDASSDSYSIDFEKIIEIAQNE-EVES-VV-SKRYGRDA--YRIFRLLSKSGRLLET 399 (523)
Q Consensus 330 ~~~~~i~~~L~~La~~-----~~~~~~~~~y~V~~~~i~~~lr~~-~le~-~v-~~~~G~~a--~RI~r~L~~k~~l~ee 399 (523)
++...+..+|+.|... ++....|+.|.+.-+ +...+... .-.. ++ ...+.... -.|+.+|.++|.+ .-
T Consensus 456 ~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~g~i-t~ 533 (583)
T 3lmm_A 456 SGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNA-CREILRKVEPSPFSPVRYLSTDQAELTNAAMLWLSEVGDL-AT 533 (583)
T ss_dssp SCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHH-HHHHHTSCC----------------------------------
T ss_pred cCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHH-HHHHhcccccccccccccccCChhHHHHHHHHHHHHcCCc-CH
Confidence 5567788889888872 244444589999854 43333221 0011 11 11122222 2588888788887 99
Q ss_pred hhhhhhcCCCcccHHHHHHHHhhcccc
Q 009896 400 DKISDTTFVEKKDAPKILYKLWKDGYL 426 (523)
Q Consensus 400 k~i~~~ami~~k~~R~~L~~L~~~g~v 426 (523)
++|++.+.++...|+.+|.+|.++|.|
T Consensus 534 ~di~~l~~ls~~qa~~~L~~Lv~~G~l 560 (583)
T 3lmm_A 534 SDLMAMCGVSRGTAKACVDGLVDEERV 560 (583)
T ss_dssp ---------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 999999999999999999999999998
No 289
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=49.45 E-value=31 Score=27.00 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 107 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 107 ~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
..-+.||.-.=....++-.+|+..+.+....--..+...|+..+..|++.+||.|.+
T Consensus 23 ~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~ 79 (88)
T 3o2p_E 23 FLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 79 (88)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECT
T ss_pred hhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCC
Confidence 345777888888888888888887765332111236889999999999999999985
No 290
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=48.02 E-value=36 Score=27.04 Aligned_cols=49 Identities=8% Similarity=0.115 Sum_probs=41.1
Q ss_pred Hhh--HHHHHHHHHHHHcCcCCHHHHHH-HhhhcccCCCccCHHHHHHHHHHHHhcccce
Q 009896 104 EFD--QQCVELVQGLLEHGRLTLKQMFD-RAKSSEKEGNLVDLDSLRETLVKLVTAHYVE 160 (523)
Q Consensus 104 ~~G--~~a~~I~~~lL~~G~~~~~~li~-~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~ 160 (523)
++| .....|+-.|-.+|..|+.++.+ ... .++..+..++.-|.++|||.
T Consensus 11 ~~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~--------~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 11 NDVLNEKTATILITIAKKDFITAAEVREVHPD--------LGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TTSSCHHHHHHHHHHHHSTTBCHHHHHHTCTT--------SCHHHHHHHHHHHHTTTSEE
T ss_pred hcCCCHHHHHHHHHHHHCCCCCHHHHHHHHhc--------ccHHHHHHHHHHHHHCCCee
Confidence 466 56888999999999999999988 321 25778999999999999998
No 291
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=47.94 E-value=45 Score=23.44 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccc
Q 009896 25 VCECLLRKGPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~ 69 (523)
|...|-.+|.+|..+|.... +++...|+..|- ..|+|. ...
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v~-~~~ 55 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLVK-VPT 55 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCEE-EEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCEE-Eec
Confidence 44455567889999999888 999999999998 668773 443
No 292
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.80 E-value=22 Score=30.61 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHc--CcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 107 QQCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 107 ~~a~~I~~~lL~~--G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
+.=..|++.|..+ +++++.+|.+.+....+ ..+...|..++..|++.|+|.++.
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGE---EIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHCCcEEEEE
Confidence 3345667777655 68999999999865422 357889999999999999999984
No 293
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=47.57 E-value=28 Score=32.54 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHhccchhcccccccCCccccHHHHHHHhhhhccCCCCCHHHHHHHHHHhcc-CCCC--CCCCCeEEEehH
Q 009896 284 DGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE-LSFV--DASSDSYSIDFE 360 (523)
Q Consensus 284 ~~a~~v~~~~L~~~~~~~~~~~~~~s~~~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~-~~~~--~~~~~~y~V~~~ 360 (523)
+-|.+|++.++.-. ..++.-+++.++...+.+. ..++.+.|.+-++.|.. .+|. ..| |.+.|-
T Consensus 94 eLavqIvEvC~~tr--------~~nGGli~l~el~~~~~r~---~~IS~dDi~rAik~L~~L~gf~v~~v~-g~~~vq-- 159 (233)
T 1u5t_A 94 EVCLKVIEICRQTK--------DMNGGVISFQELEKVHFRK---LNVGLDDLEKSIDMLKSLECFEIFQIR-GKKFLR-- 159 (233)
T ss_dssp HHHHHHHHHHHHHT--------TTSSSCEEHHHHHHTTTTT---TTCCHHHHHHHHHHHTTTCCCCEEEET-TEEEEC--
T ss_pred HHHHHHHHHHHHHH--------HhcCCeeEHHHHHHHHHhh---cCCCHHHHHHHHHHhhhccCeEEEEEC-CEEEEE--
Confidence 34555666665533 2356688999999988764 56888888888777764 3332 212 344331
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 361 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 361 ~i~~~lr~~~le~~v~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.|-.-......+|+.+...+|.. ....+++....+..-|+..|..|.++|++-+
T Consensus 160 -------------svp~el~~D~~~vLe~a~~~g~v-t~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwv 213 (233)
T 1u5t_A 160 -------------SVPNELTSDQTKILEICSILGYS-SISLLKANLGWEAVRSKSALDEMVANGLLWI 213 (233)
T ss_dssp -------------CSSSCCCTTHHHHHHTTTTTSCC-BHHHHHHHHCCCSHHHHHHHHHHHHTTSSEE
T ss_pred -------------eCCCccchHHHHHHHHHHhcCcC-cHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 11122455566666665445666 9999999999999999999999999999954
No 294
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=46.99 E-value=47 Score=27.20 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhc------CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t------~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|.+--.|-..| ..|+.+-.+|.+.. ++++..|-.+|-.|.+.|+|.....+.++|+ ...+|.+-..+
T Consensus 10 g~l~~~IL~lL-~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~-~rk~Y~LT~~G 82 (117)
T 4esf_A 10 GSLEGCVLEII-SRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGP-PRKFYSLNEAG 82 (117)
T ss_dssp HHHHHHHHHHH-HHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC------CEEEEEECHHH
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCC-CceEEEECHHH
Confidence 33444444444 46888888887764 7999999999999999999984433222222 34689887765
No 295
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=46.62 E-value=30 Score=28.49 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=46.3
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHH
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 450 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~ 450 (523)
.-.+|+..|. +|.+ .-.+|++...++...+...|..|.+.|+|..... ++.. +|+++.+.
T Consensus 47 ~rl~IL~~L~-~~~~-s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~------gr~~-~y~l~~~~ 106 (122)
T 1r1t_A 47 NRLRLLSLLA-RSEL-CVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ------GRHV-YYQLQDHH 106 (122)
T ss_dssp HHHHHHHHHT-TCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE------TTEE-EEEESSHH
T ss_pred HHHHHHHHHH-cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe------CCEE-EEEEChHH
Confidence 3467888885 4677 8999999999999999999999999999976432 2223 46666554
No 296
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=46.36 E-value=73 Score=26.22 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=29.6
Q ss_pred CC-cHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 34 ~l-tl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++ |..+|+...+++...||.||..|.+.|+|.
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~ 68 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIY 68 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 45 489999999999999999999999999997
No 297
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=46.14 E-value=1.1e+02 Score=24.86 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhc------CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t------~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|.+-..|-..| ..|+.+-.+|.+.. ++++..+-.+|-.|.+.|+|.....+.++|+ ...+|++-..+
T Consensus 12 g~l~~~IL~lL-~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~-~rk~Y~lT~~G 84 (116)
T 3hhh_A 12 GILEGLVLAII-QRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGP-MRKFYRLTSSG 84 (116)
T ss_dssp THHHHHHHHHH-HHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--C-EEEEEEECHHH
T ss_pred hhHHHHHHHHH-hcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCC-CceEEEECHHH
Confidence 33334444444 57888888888775 6999999999999999999984433222222 35689887765
No 298
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=45.95 E-value=38 Score=28.79 Aligned_cols=45 Identities=4% Similarity=0.088 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhc-CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRK-GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~-G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+.+=.+.-+|..+ |+ |..+|+...++|++-+++.|..|.+.|+|.
T Consensus 9 ~yAl~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~ 54 (145)
T 1xd7_A 9 AVAIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILT 54 (145)
T ss_dssp HHHHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 3344444455543 45 999999999999999999999999999998
No 299
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=45.77 E-value=17 Score=32.86 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=41.8
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
..-.+|+++|. .|.+ ...+|++...++...++..+.+|.+.|+|.-.
T Consensus 20 ~~~~~IL~~L~-~~~~-s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 20 DTRRKILKLLR-NKEM-TISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHHT-TCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34467999986 6787 99999999999999999999999999999776
No 300
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.94 E-value=33 Score=29.43 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=43.8
Q ss_pred HHHHHHHHhc--CCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEec
Q 009896 23 AKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVL 84 (523)
Q Consensus 23 ~~V~~~Ll~~--G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~ 84 (523)
..|..+|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-...++ ....|.++
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-----~~~~Y~~~ 83 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEG-----GKSVFELS 83 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGG-----GCEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCC-----CceEEEec
Confidence 4577888765 589999998765 799999999999999999998444332 13678763
No 301
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=44.86 E-value=1.2e+02 Score=25.59 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=43.2
Q ss_pred HHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 24 ~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.|-.+|...| ..+..+|++..++++..|-..+-.|.+.|+|. -..++.++ + ....++-..+
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~-R~~~~~Dr-R-~~~l~LT~~G 96 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT-RHTSANDR-R-AKRIKLTEQS 96 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE-EEECSSCT-T-CEEEEECGGG
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE-eecCCCCC-c-chhhhcCHHH
Confidence 4556666655 46779999999999999999999999999998 33332221 2 3455554444
No 302
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.67 E-value=37 Score=28.72 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=43.5
Q ss_pred HHHHHHHhc-CCCcHHHHHhhc-----CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEech
Q 009896 24 KVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLF 85 (523)
Q Consensus 24 ~V~~~Ll~~-G~ltl~~l~~~t-----~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~ 85 (523)
.|.++|... +.+|..+|.... +++...|-..|-.|...|+|.-...++ ....|..+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-----g~~~Y~~~~ 80 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE-----GESVYRRCS 80 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT-----SCEEEECCS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC-----CceEEEECC
Confidence 467777764 688999997664 699999999999999999998444432 136787654
No 303
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=44.40 E-value=10 Score=35.13 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred cHHHHH-HHHhhcccceEEEEecCCCCceEEEEEE
Q 009896 412 DAPKIL-YKLWKDGYLLMEKLVVTGARQSQFLLWK 445 (523)
Q Consensus 412 ~~R~~L-~~L~~~g~v~lQEvpk~~~~~~t~~lw~ 445 (523)
+.|+++ -.|.++||++-+.||.+ .|.+..|+|-
T Consensus 141 e~rklit~~lV~e~YLey~qvp~s-dp~~yeflWG 174 (217)
T 3nw0_B 141 DPKKLITEDFVRQRYLEYRRIPHT-DPVDYEFQWG 174 (217)
T ss_dssp --HHHHHHHHHHHTCEECC----------CCEECC
T ss_pred CHHHHHHHHHHHcCCeEEEeecCC-CCCeEEEEEc
Confidence 678888 79999999999999988 6888889995
No 304
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=42.97 E-value=38 Score=30.09 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=47.2
Q ss_pred HHHHHhhhchhHHHHHHHHHhcC--------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 11 VHVITNHFGDLVAKVCECLLRKG--------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 11 ~~iv~~~FG~~v~~V~~~Ll~~G--------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
..+..-.+.+.-.+++..|+... ++|..+|+...++++..|-..|--|.+.|++.
T Consensus 138 ~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 138 WLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 33444567888899999998743 78999999999999999999999999999997
No 305
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=42.91 E-value=8.7 Score=30.97 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=31.3
Q ss_pred cCCC-cHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 32 KGPL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 32 ~G~l-tl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+++ +..+|+...+++...|+.+|-.|.+.|+|.
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~ 74 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLESAGVIE 74 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456 899999999999999999999999999997
No 306
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.73 E-value=13 Score=35.14 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=37.3
Q ss_pred hHHHHHHHH---H-hcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 21 LVAKVCECL---L-RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 21 ~v~~V~~~L---l-~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+.+...+| . ..+++|+.+|.+.++++.+.+..-|-.|.++|+|.
T Consensus 21 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~ 69 (260)
T 2o0y_A 21 SVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLT 69 (260)
T ss_dssp HHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344555554 2 24689999999999999999999999999999997
No 307
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=42.34 E-value=16 Score=34.44 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=38.0
Q ss_pred cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechh
Q 009896 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFD 86 (523)
Q Consensus 32 ~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~ 86 (523)
.+++|+.+|.+.++++.+.+..-|-.|.++|+|.. . + -.|.+.+.
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~-~-~--------~~Y~Lg~~ 71 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAG-S-G--------GRWSLTPR 71 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-E-T--------TEEEECGG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-C-C--------CEEEEcHH
Confidence 36799999999999999999999999999999973 2 1 16887654
No 308
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=42.23 E-value=1.2e+02 Score=24.55 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhc------CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t------~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|.+--.|-..| ..|+++-.+|.+.. ++++..|-.+|-.|.+.|+|.......++|+ ...+|++-..+
T Consensus 8 g~l~~~IL~~L-~~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~-~rk~Y~LT~~G 80 (115)
T 4esb_A 8 GVLEGCILYII-SQEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGP-KRKYYHITDKG 80 (115)
T ss_dssp TTHHHHHHHHH-HHSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSC-EEEEEEECHHH
T ss_pred CHHHHHHHHHH-HcCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCC-CcEEEEECHHH
Confidence 34444455555 46888888887664 5899999999999999999984333222222 35689887765
No 309
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.69 E-value=29 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCC--CcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccc
Q 009896 23 AKVCECLLRKGP--LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69 (523)
Q Consensus 23 ~~V~~~Ll~~G~--ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~ 69 (523)
..|..++-..|. .+..+|...++|+...|..+|-.|...++|.....
T Consensus 40 ~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vks 88 (95)
T 2yu3_A 40 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKS 88 (95)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEecC
Confidence 357777777665 89999999999999999999999999999984443
No 310
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=41.24 E-value=14 Score=35.13 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=36.9
Q ss_pred hHHHHHHHH---Hh-cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 21 LVAKVCECL---LR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 21 ~v~~V~~~L---l~-~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+.+...+| .. .+++|+.+|++.++++.+.+..-|-.|.++|+|.
T Consensus 19 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~ 67 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVA 67 (265)
T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344444444 22 4679999999999999999999999999999997
No 311
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=40.32 E-value=38 Score=29.98 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=40.9
Q ss_pred hhchhHHHHHHHHHhcCCCcHHHHHhhcC-----CCHHHHHHHHHHHHhhcccc
Q 009896 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTE-----LSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~-----l~~~~vr~aL~vLiQhn~V~ 65 (523)
.|.+--..|...|+-||++|..+|-..++ -+...|...|--|+++.+|.
T Consensus 105 ~l~~~e~All~~LlLRGpQT~gELRtRs~Rl~~F~d~~~Ve~~L~~L~~r~lV~ 158 (183)
T 2nr3_A 105 ELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLAT 158 (183)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTTTSCCSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhcCCCChHHHHHhhhcCCcCCCHHHHHHHHHHHhhCcHHH
Confidence 45566667888899999999999976654 26799999999999999886
No 312
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=40.18 E-value=26 Score=30.66 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHHHHHHhc--CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 24 KVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 24 ~V~~~Ll~~--G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++.-+|..+ +++|..+|+...++|+.-|++.|-.|-+.|+|.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~ 59 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLT 59 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 334444433 468999999999999999999999999999997
No 313
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=40.16 E-value=43 Score=26.65 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=32.7
Q ss_pred CCCcHHHHHhhcCCCHHHHHHHHHHHHhhccccc
Q 009896 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (523)
Q Consensus 33 G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~ 66 (523)
|++++.+|...+.++.+.+...|-.|.+.|+|.-
T Consensus 35 ~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r 68 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADV 68 (96)
T ss_dssp CCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEe
Confidence 8899999999999999999999999999999983
No 314
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=40.14 E-value=7.6 Score=33.95 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=44.0
Q ss_pred hchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccc
Q 009896 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (523)
Q Consensus 18 FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~ 67 (523)
+-++-..|...|...+++|..+|+...+++...|+.+|-.|.+.|+|..|
T Consensus 11 ~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~~ 60 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGY 60 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEEE
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 55667788887777789999999999999999999999999999999843
No 315
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=39.92 E-value=63 Score=24.92 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=35.4
Q ss_pred chHHHHHHHHh-hCC---CcchhhhhhhcCCCcccHHHHHHHHhhcccc
Q 009896 382 DAYRIFRLLSK-SGR---LLETDKISDTTFVEKKDAPKILYKLWKDGYL 426 (523)
Q Consensus 382 ~a~RI~r~L~~-k~~---l~eek~i~~~ami~~k~~R~~L~~L~~~g~v 426 (523)
.+..|+-.+.. .+. + ...+|++...++...+-.++.+|.+.|||
T Consensus 13 ~~~~iL~~l~~~~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDV-YIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCE-EHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHHccCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 34455555533 333 6 99999999999999999999999999999
No 316
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=39.87 E-value=58 Score=31.40 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|+..| ..|+.|+.+|+..+++++..++.-|-.|..+|++.
T Consensus 33 i~~~l-~~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~ 72 (334)
T 2ip2_A 33 LADLI-ESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQ 72 (334)
T ss_dssp HHHHH-HTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceE
Confidence 45666 35899999999999999999999999999999997
No 317
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.80 E-value=88 Score=29.29 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=63.7
Q ss_pred HHcCCch--HHHHHHHHhh--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCC-CCceEEEEEEEchHHH
Q 009896 377 KRYGRDA--YRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQIL 451 (523)
Q Consensus 377 ~~~G~~a--~RI~r~L~~k--~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~-~~~~t~~lw~v~~~~~ 451 (523)
+.||--. ..|+..|..+ +.+ .+++|++...+....+=.+|-+|.+.|||. .+.+ ...|.++++-.+.-
T Consensus 28 ~~~~lt~~q~~vL~~L~~~~~~~~-~~~el~~~l~~~~~t~t~~l~rLe~~G~i~----R~~~~~DrR~~~i~LT~~G-- 100 (250)
T 1p4x_A 28 PEVDMTIKEFILLTYLFHQQENTL-PFKKIVSDLCYKQSDLVQHIKVLVKHSYIS----KVRSKIDERNTYISISEEQ-- 100 (250)
T ss_dssp TTCSSCHHHHHHHHHHHSCSCSEE-EHHHHHHHSSSCGGGTHHHHHHHHHTTSCE----EEECSSSTTSEEEECCHHH--
T ss_pred hhcCCCHHHHHHHHHHHhcCCCCc-CHHHHHHHHCCCHhhHHHHHHHHHHCCCEE----ecCCCCCCCeEEEEECHHH--
Confidence 3445443 4678888664 356 999999999999999999999999999993 3323 56777777766543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009896 452 WKHVLDEMFHAALNLSLRVSYE 473 (523)
Q Consensus 452 ~~~~l~~~~k~~~nl~~R~~~e 473 (523)
..+++.+......++.....|
T Consensus 101 -~~~~~~~~~~~~~~~eq~s~E 121 (250)
T 1p4x_A 101 -REKIAERVTLFDQIIKQFNLA 121 (250)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhcc
Confidence 335667777766666555554
No 318
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=39.02 E-value=14 Score=32.17 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=41.2
Q ss_pred cCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 379 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
+...-.+|++.|...+.+ .+.+|++...++...+|+.+.+|..+|+|..
T Consensus 11 ~d~l~~~Il~~l~~~~~l-s~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHHHCSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 444456788866555567 9999999999999999999999999999985
No 319
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=38.99 E-value=56 Score=28.52 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHh----cC----------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 8 KHAVHVITNHFGDLVAKVCECLLR----KG----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~----~G----------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+...+..-.+.+.-.+++.+|+. .| ++|..+|+...++++..|-..|-.|.+.|+|.
T Consensus 99 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 99 RVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 344445556788999999999986 33 36889999999999999999999999999997
No 320
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=38.85 E-value=19 Score=29.97 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=31.8
Q ss_pred hCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 393 SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 393 k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+.+ ...+|++...++...+...+.+|.+.|||.-
T Consensus 29 ~~~~-s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 29 GEGA-KINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TSCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 3455 9999999999999999999999999999965
No 321
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=38.70 E-value=12 Score=35.37 Aligned_cols=85 Identities=14% Similarity=0.265 Sum_probs=55.7
Q ss_pred hHHHHHHHHhhC-CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHH--HHHHH--HH
Q 009896 383 AYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI--LWKHV--LD 457 (523)
Q Consensus 383 a~RI~r~L~~k~-~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~--~~~~~--l~ 457 (523)
+++|+++|...+ .+ .-.+|++...+|...+..+|..|.+.|||.-. + +. |++...- +-... -.
T Consensus 16 ~l~iL~~l~~~~~~~-~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~--~------~~---Y~Lg~~~~~l~~~~~~~~ 83 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNP-TLAELATEAGLSRPAVRRILLTLQKLGYVAGS--G------GR---WSLTPRVLSIGQHYSESH 83 (257)
T ss_dssp HHHHHHTCSSSCSSC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T------TE---EEECGGGHHHHTTCCHHH
T ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC--C------CE---EEEcHHHHHHHHHhhccC
Confidence 566777775433 45 89999999999999999999999999999642 1 22 2333221 11111 13
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 009896 458 EMFHAALNLSLRVSYELDREKE 479 (523)
Q Consensus 458 ~~~k~~~nl~~R~~~e~~~~k~ 479 (523)
.+...+.-.+.++..+......
T Consensus 84 ~l~~~a~p~l~~L~~~~~etv~ 105 (257)
T 2g7u_A 84 ALIEAAMPRLLEVAEKTQESAS 105 (257)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEE
T ss_pred cHHHHHHHHHHHHHHHHCCEEE
Confidence 4566666777777766654443
No 322
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=38.67 E-value=21 Score=29.80 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=32.1
Q ss_pred cchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecC
Q 009896 397 LETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVT 434 (523)
Q Consensus 397 ~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~ 434 (523)
....+|++...++..++...+..|.+.|||....-++.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~ 89 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDE 89 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECC
Confidence 49999999999999999999999999999988665554
No 323
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=38.66 E-value=63 Score=25.45 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 109 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 109 a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
-+.|+.-.=....++-.+|+..+.+....--..+...|+..+..|++.+||.|.+
T Consensus 28 ~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~ 82 (92)
T 1iuy_A 28 EAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTP 82 (92)
T ss_dssp HHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred eeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCC
Confidence 3556666666777777777777665322111236788999999999999999985
No 324
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=38.49 E-value=45 Score=29.57 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=39.9
Q ss_pred hhchhHHHHHHHHHhcCCCcHHHHHhhcC-C----CHHHHHHHHHHHHhhcccc
Q 009896 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTE-L----SDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~-l----~~~~vr~aL~vLiQhn~V~ 65 (523)
.|-+--..|...|+-||++|..+|-..++ + +...|...|--|+++.+|.
T Consensus 105 ~l~~~e~All~~LlLRGpQT~GELRtRs~Rl~~F~d~~~Ve~~L~~L~~r~lv~ 158 (183)
T 3bz6_A 105 ELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLAT 158 (183)
T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHTTTSCCSSHHHHHHHHHHHHHHTSEE
T ss_pred CCCHHHHHHHHHHHhcCCCChhHHHHhHhhccccCCHHHHHHHHHHHhcCCcee
Confidence 34455566778888999999999966553 2 6789999999999999987
No 325
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=38.40 E-value=52 Score=26.57 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=28.8
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 36 TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 36 tl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|..+|+...+++...|+.||-.|.+.|+|.
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~ 64 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIE 64 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 688999999999999999999999999996
No 326
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=37.93 E-value=85 Score=25.58 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcC------CCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHH
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTE------LSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNIL 89 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~------l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il 89 (523)
|.+--.|-..| ..|+.+-.+|.+... +++..|-..|-.|.+.|+|.....+.++++ ...+|++-..+-=
T Consensus 13 g~l~~~IL~lL-~~~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~-~rk~Y~lT~~G~~ 87 (117)
T 3elk_A 13 GLITLYILKEL-VKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQ-QLTVYHITDAGKK 87 (117)
T ss_dssp HHHHHHHHHHH-HHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCC-EEEEEEECHHHHH
T ss_pred hHHHHHHHHHH-HcCCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCC-CceEEEECHHHHH
Confidence 44445555555 468888888877643 889999999999999999984433222222 3568988777543
No 327
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=37.90 E-value=1.7e+02 Score=24.75 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=40.9
Q ss_pred CchHHHHHHHHhhCCCcchhhhhhhc--------CCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEch
Q 009896 381 RDAYRIFRLLSKSGRLLETDKISDTT--------FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 448 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~eek~i~~~a--------mi~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~ 448 (523)
.--..|+.+|.. +.+ .-.+|.+.. -++...+-..|.+|.++|||.-...+....+.+.+| ++..
T Consensus 41 ~~~~~IL~~L~~-~~~-~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y--~LT~ 112 (145)
T 1xma_A 41 YVDTIILSLLIE-GDS-YGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYY--RITP 112 (145)
T ss_dssp THHHHHHHHHHH-CCE-EHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEE--EECH
T ss_pred cHHHHHHHHHHh-CCC-CHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEE--EECH
Confidence 334556666643 444 444444433 478889999999999999998887764334556655 5553
No 328
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=37.60 E-value=30 Score=28.92 Aligned_cols=32 Identities=9% Similarity=0.339 Sum_probs=29.9
Q ss_pred CC-cHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 34 ~l-tl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++ +..+|+...+++...||.||..|.+.|+|.
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~ 59 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLLVEAGILY 59 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEE
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 45 789999999999999999999999999997
No 329
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=37.47 E-value=30 Score=25.73 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCCcHHHHHhhcCCCH-HHHHHHHHHHHhhcccc
Q 009896 22 VAKVCECLLRKGPLTRQNVKRYTELSD-EQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 22 v~~V~~~Ll~~G~ltl~~l~~~t~l~~-~~vr~aL~vLiQhn~V~ 65 (523)
=.+|+++|-.+|+.+.-.|.+..|+.. ++|---|..|-..|++.
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~ 56 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLD 56 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHHHccCcC
Confidence 356999999999999999999999965 45999999999999996
No 330
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=37.34 E-value=57 Score=26.97 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=29.1
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 36 TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 36 tl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+..+|+...+++...||.||-.|.+.|+|.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~ 66 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIR 66 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 899999999999999999999999999996
No 331
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=37.13 E-value=8.7 Score=36.51 Aligned_cols=90 Identities=8% Similarity=0.060 Sum_probs=58.4
Q ss_pred chHHHHHHHHhh-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHHHHHHHHH--H
Q 009896 382 DAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLD--E 458 (523)
Q Consensus 382 ~a~RI~r~L~~k-~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~~~~~~l~--~ 458 (523)
.+++|+++|... +.+ .-.+|++...+|...+..+|..|...|||.- .+.+ +. |.--...-.+-..... .
T Consensus 7 Ral~IL~~l~~~~~~l-sl~eia~~lgl~ksT~~RlL~tL~~~G~v~~--~~~~----~~-Y~lG~~~~~lg~~~~~~~~ 78 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEI-GLSDLTRLSGMNKATVYRLMSELQEAGFVEQ--VEGA----RS-YRLGPQVLRLAALREASVP 78 (260)
T ss_dssp HHHHHHTTCBTTBSEE-EHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--CSSS----SE-EEECTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--cCCC----Cc-EEcCHHHHHHHHHHHhcCC
Confidence 366777777543 345 8999999999999999999999999999942 1221 22 2222222233333332 4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 009896 459 MFHAALNLSLRVSYELDREKE 479 (523)
Q Consensus 459 ~~k~~~nl~~R~~~e~~~~k~ 479 (523)
+...+.-.+.++..+....-.
T Consensus 79 l~~~a~p~l~~L~~~~getv~ 99 (260)
T 3r4k_A 79 ILSASRRVLRELSEDTGETTH 99 (260)
T ss_dssp HHHHHHHHHHHHHHHHSSEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEE
Confidence 566667777777776655443
No 332
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=36.74 E-value=70 Score=27.12 Aligned_cols=46 Identities=15% Similarity=0.043 Sum_probs=39.9
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
-...|++.|. .|.+ ...+|++...++...+-..|.+|.+.|+|+-.
T Consensus 25 w~l~IL~~L~-~g~~-~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~ 70 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLT-RFGEFQKSLGLAKNILAARLRNLVEHGVMVAV 70 (146)
T ss_dssp SHHHHHHHHH-TTCC-SHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHH-hCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3456888884 6777 99999999999999999999999999999643
No 333
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=36.35 E-value=59 Score=28.56 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=47.4
Q ss_pred HHHHHHhhhchhHHHHHHHHHhcC--------------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 10 AVHVITNHFGDLVAKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~G--------------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
...+..-.+.+...+|+..|+... ++|-.+|+..+++++..|-..|-.|.+.|++.
T Consensus 129 ~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 129 SEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 344555678889999999998531 57889999999999999999999999999997
No 334
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=35.96 E-value=1.5e+02 Score=25.11 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhc--------CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t--------~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
.+--.|-..| ..|+++..+|.+.. ++++..|-..|-.|.+.|+|.....+.++++ ...+|.+-...
T Consensus 41 ~~~~~IL~~L-~~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~-~rk~Y~LT~~G 114 (145)
T 1xma_A 41 YVDTIILSLL-IEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGK-RRTYYRITPEG 114 (145)
T ss_dssp THHHHHHHHH-HHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--C-EEEEEEECHHH
T ss_pred cHHHHHHHHH-HhCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCC-CeEEEEECHHH
Confidence 3444455555 56889999987765 6999999999999999999983332211222 35688887664
No 335
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=35.73 E-value=1.2e+02 Score=25.30 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=42.2
Q ss_pred CCchHHHHHHHHhhCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEEEe
Q 009896 380 GRDAYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKLV 432 (523)
Q Consensus 380 G~~a~RI~r~L~~k~~l~eek~i~~~a-mi~~k~~R~~L~~L~~~g~v~lQEvp 432 (523)
|.-...|++.|. .|.+ .-.+|++.. .|+.+..-..|-+|.+.|+|.-...|
T Consensus 25 ~kW~l~IL~~L~-~g~~-rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 25 GKWKGILFYHMI-DGKK-RFNEFRRICPSITQRMLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp SSSHHHHHHHHT-TSCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CcCHHHHHHHHh-cCCc-CHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecC
Confidence 334567888885 7788 999999999 99999999999999999999755443
No 336
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=35.21 E-value=88 Score=27.81 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhcC---------------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 8 KHAVHVITNHFGDLVAKVCECLLRKG---------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~G---------------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+...+..-.+.+...+++..|+... ++|..+|+...++++..|-.+|-.|.+.|+|.
T Consensus 122 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 122 SCMRTIEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 33444555567889999999998643 37889999999999999999999999999997
No 337
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=35.10 E-value=1.1e+02 Score=23.65 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=47.0
Q ss_pred chHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHHH
Q 009896 382 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQIL 451 (523)
Q Consensus 382 ~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~~ 451 (523)
.-.+|++.|..+|.+ .-.+|++...++...+...|..|.+. +|.... . ++. .+|+++.+.+
T Consensus 28 ~Rl~IL~~l~~~~~~-~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~---~---gr~-~~y~l~~~~~ 88 (99)
T 2zkz_A 28 MRLKIVNELYKHKAL-NVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNR---Q---GLE-IYYSINNPKV 88 (99)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEE---E---TTE-EEEECCCHHH
T ss_pred HHHHHHHHHHHCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheE---e---CcE-EEEEEChHHH
Confidence 346788777777888 99999999999999999999999999 986532 1 223 3467776543
No 338
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=34.79 E-value=33 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.055 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
..|++.+ ..| . .-.+|+..+.++...++..+..|.+.|||+..
T Consensus 11 ~~IL~~i-~~~-~-~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEAC-KSG-S-PKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHH-TTC-B-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH-HcC-C-CHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3456655 345 5 99999999999999999999999999999653
No 339
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=34.78 E-value=1.3e+02 Score=24.40 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=40.9
Q ss_pred HHhcCCCcHHHHHhhc-------CCCHHHHHHHHHHHHhhcccccccccC-CCCCCcceEEEechhh
Q 009896 29 LLRKGPLTRQNVKRYT-------ELSDEQVKNALLVLIQQNCVQAFTTEQ-PDGPKANTQYVVLFDN 87 (523)
Q Consensus 29 Ll~~G~ltl~~l~~~t-------~l~~~~vr~aL~vLiQhn~V~~~~~~~-~~~~~~~~~Y~~~~~~ 87 (523)
++..|+..-.+|.+.. +++...|-.+|-.|.+.|+|....... +++ +...+|++-..+
T Consensus 30 lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~-~~rk~Y~LT~~G 95 (115)
T 2dql_A 30 VLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRG-RPRRMYQVSPEW 95 (115)
T ss_dssp HHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCS-SCEEEEEECGGG
T ss_pred HHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCC-CCcEEEEECHHH
Confidence 3456787777765443 589999999999999999998433322 222 235789987765
No 340
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=34.72 E-value=12 Score=35.49 Aligned_cols=86 Identities=6% Similarity=0.088 Sum_probs=54.7
Q ss_pred hHHHHHHHHh-hCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHH--HHHHHHH--
Q 009896 383 AYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI--LWKHVLD-- 457 (523)
Q Consensus 383 a~RI~r~L~~-k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~--~~~~~l~-- 457 (523)
+++|+++|.. .+.+ .-.+|++...+|...+..+|..|.+.|||.- . +.. -|++...- +-.....
T Consensus 25 ~l~iL~~l~~~~~~~-~~~eia~~~gl~kstv~r~l~tL~~~G~v~~-----~--~~~---~Y~lg~~~~~lg~~~~~~~ 93 (260)
T 2o0y_A 25 VIDLLELFDAAHPTR-SLKELVEGTKLPKTTVVRLVATMCARSVLTS-----R--ADG---SYSLGPEMLRWVRLAGRTW 93 (260)
T ss_dssp HHHHHTTCBTTBSSB-CHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE-----C--TTS---CEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-----C--CCC---eEEecHHHHHHHHHHHccC
Confidence 5667776643 3456 8999999999999999999999999999943 1 111 24444332 2222221
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 009896 458 EMFHAALNLSLRVSYELDREKE 479 (523)
Q Consensus 458 ~~~k~~~nl~~R~~~e~~~~k~ 479 (523)
.+...+.-.+.++..+......
T Consensus 94 ~l~~~a~p~l~~L~~~~~etv~ 115 (260)
T 2o0y_A 94 APPEEVVDIMRQLSADTGETVN 115 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHHHhHCCcEE
Confidence 3445555666777666554433
No 341
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=34.69 E-value=63 Score=31.03 Aligned_cols=81 Identities=11% Similarity=0.127 Sum_probs=53.2
Q ss_pred HHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh-HHHHh----chhhHHH
Q 009896 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN-ILHRV----RFAKFLT 99 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~-il~rl----R~p~~i~ 99 (523)
|+..|- .|+.|+.+|+..+++++..++.-|-.|..+|++.. .+ -.|....-. .+.+- .++.|+.
T Consensus 31 i~~~l~-~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~--~~--------~~y~~t~~~~~~l~~~~~~~~~~~~~ 99 (335)
T 2r3s_A 31 VFTAIS-QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK--QA--------EGYRLTSDSAMFLDRQSKFYVGDAIE 99 (335)
T ss_dssp HHHHHT-TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ET--------TEEEECHHHHHHTCTTSTTCCGGGHH
T ss_pred hHHHHh-cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEe--cC--------CEEecCHHHHHHhccCCcHHHHHHHH
Confidence 456665 48999999999999999999999999999999962 21 267765543 22221 1445566
Q ss_pred HHHH-HhhHHHHHHHHHH
Q 009896 100 ILSQ-EFDQQCVELVQGL 116 (523)
Q Consensus 100 ~i~~-~~G~~a~~I~~~l 116 (523)
+... .+......+.+.+
T Consensus 100 ~~~~~~~~~~~~~l~~~l 117 (335)
T 2r3s_A 100 FLLSPMITNGFNDLTAAV 117 (335)
T ss_dssp HHTCHHHHGGGTTHHHHH
T ss_pred HhcchhhHHHHHhHHHHH
Confidence 6533 3333334444433
No 342
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=34.64 E-value=27 Score=29.29 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=29.6
Q ss_pred CC-cHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 34 ~l-tl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++ |..+|+...+++...||.||-.|.+.|+|.
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L~~eGlv~ 69 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQELERQEVII 69 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 45 578999999999999999999999999997
No 343
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=34.07 E-value=6.5 Score=31.41 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=30.1
Q ss_pred CC-cHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 34 ~l-tl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++ +..+|+...+++...|+.+|-.|.+.|+|.
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~ 66 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVLKSEGLVS 66 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44 899999999999999999999999999997
No 344
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.07 E-value=73 Score=27.65 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=42.1
Q ss_pred HHHHHHHHhc-CCCcHHHHHhh-------cCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEec
Q 009896 23 AKVCECLLRK-GPLTRQNVKRY-------TELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVL 84 (523)
Q Consensus 23 ~~V~~~Ll~~-G~ltl~~l~~~-------t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~ 84 (523)
..|.++|... +.+|..+|... .++++..|-.+|-.|.+.|+|.-...++ ....|..+
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~-----~~~~Y~~~ 100 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGS-----AGKKYELA 100 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC----------CCEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCC-----CceEEEeC
Confidence 4577888876 78999999653 4689999999999999999998444322 13568775
No 345
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=33.96 E-value=13 Score=35.35 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=55.2
Q ss_pred hHHHHHHHHhh-CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchHHHHHHHH--HHH
Q 009896 383 AYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVL--DEM 459 (523)
Q Consensus 383 a~RI~r~L~~k-~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~~~~~~~l--~~~ 459 (523)
+++|+.+|... +.+ .-.+|++...+|...+..+|..|.+.|||.-. + +.|.| ....-.+-.... ..+
T Consensus 23 ~l~iL~~l~~~~~~~-~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~----~----~~Y~L-g~~~~~lg~~~~~~~~l 92 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRR-TLSDVARATDLTRATARRFLLTLVELGYVATD----G----SAFWL-TPRVLELGYSYLSSLSL 92 (265)
T ss_dssp HHHHHHTCCSSCSSE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES----S----SEEEE-CGGGGGTTHHHHTTCCH
T ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec----C----CEEEE-cHHHHHHHHHHHhcCCH
Confidence 56677766433 345 88999999999999999999999999999531 1 22222 111111112221 245
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 009896 460 FHAALNLSLRVSYELDREKE 479 (523)
Q Consensus 460 ~k~~~nl~~R~~~e~~~~k~ 479 (523)
...+.-.+.++..+......
T Consensus 93 ~~~a~p~l~~L~~~~getv~ 112 (265)
T 2ia2_A 93 PEVAQPHLEKLSHKVHESSS 112 (265)
T ss_dssp HHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHCCEEE
Confidence 56666777777776655443
No 346
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=33.78 E-value=45 Score=35.40 Aligned_cols=61 Identities=5% Similarity=-0.044 Sum_probs=48.5
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcC-------CCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEech
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTE-------LSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLF 85 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~-------l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~ 85 (523)
+.+..+|.+.+-.+|.+|..+|.+..+ .+....+..|-.+++.|+++ .....+ -.+|..|.
T Consensus 493 ~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~-rDd~~~-----G~~yypNl 560 (566)
T 1w7p_D 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLL-IDKQLS-----GIYYYKNS 560 (566)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEE-EEEETT-----EEEEEECC
T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEE-EECCCC-----ceEEehhh
Confidence 566677777776789999999999999 99999999999999999997 333322 25676654
No 347
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=33.68 E-value=86 Score=27.11 Aligned_cols=66 Identities=6% Similarity=0.016 Sum_probs=47.2
Q ss_pred chHHHHHHHHhhC--CCcchhhhhhhcC-CCcccHHHHHHHHhhcccceEEEEecCC-CCceEEEEEEEch
Q 009896 382 DAYRIFRLLSKSG--RLLETDKISDTTF-VEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNR 448 (523)
Q Consensus 382 ~a~RI~r~L~~k~--~l~eek~i~~~am-i~~k~~R~~L~~L~~~g~v~lQEvpk~~-~~~~t~~lw~v~~ 448 (523)
.=.+|+..|+.+. .. .-.+|.+.-- |+...++..|-.|.+.|+|+..+.+... ..++.-..|.+..
T Consensus 30 tR~~IL~~Ll~~p~~~~-ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVL-SVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHHHHSTTSCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred HHHHHHHHHHcCCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 3457888887652 34 6677877666 8899999999999999999877776533 3344445556663
No 348
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=33.64 E-value=2.9e+02 Score=25.60 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhcC--CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHHHHhchhhHH
Q 009896 21 LVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNILHRVRFAKFL 98 (523)
Q Consensus 21 ~v~~V~~~Ll~~G--~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p~~i 98 (523)
+..+|...+-..| +.++.+|....+++.+.++..|-.|++.|.|.....+ .||..
T Consensus 142 ~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~--------~~~~~--------------- 198 (258)
T 1lva_A 142 LLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDE--------FYWHR--------------- 198 (258)
T ss_dssp HHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSS--------BEEEH---------------
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCC--------eEEcH---------------
Confidence 4566777776667 5578999999999999999999999999988633221 35542
Q ss_pred HHHHHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 99 TILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 99 ~~i~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
+.|-.....|.+.+ .+|.+|+.++-+.+.. ++--.-..+.-|=..||..|+.
T Consensus 199 ----~~~~~~~~~l~~~~-~~~~it~a~~Rd~lg~--------SRK~aIplLE~~Dr~g~TrR~g 250 (258)
T 1lva_A 199 ----QALGEAREVIKNLA-STGPFGLAEARDALGS--------SRKYVLPLLEYLDQVKFTRRVG 250 (258)
T ss_dssp ----HHHHHHHHHHHHHH-TTSCBCHHHHHHHHTC--------CHHHHHHHHHHHHHTTSEEEET
T ss_pred ----HHHHHHHHHHHHHH-hcCCcCHHHHHHHhCC--------cHHHHHHHHHHHhhcCceeeeC
Confidence 12334455556666 8999999998877643 4444456666666778887763
No 349
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=33.13 E-value=56 Score=30.47 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.....|.+..-..|..|..+|....+.+....+.+|-.|++.|+++
T Consensus 154 ~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gllw 199 (234)
T 3cuq_A 154 MDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAW 199 (234)
T ss_dssp HHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCE
T ss_pred hHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEE
Confidence 3445565655568999999999999999999999999999999997
No 350
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=32.71 E-value=38 Score=27.33 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=39.4
Q ss_pred CchHHHHHHHHhhCCCcc--hhhhhhhc-CCCcccHHHHHHHHhhcccceEE
Q 009896 381 RDAYRIFRLLSKSGRLLE--TDKISDTT-FVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 381 ~~a~RI~r~L~~k~~l~e--ek~i~~~a-mi~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.-..+|++.|. .|.. . ..+|++.. .++.+.+-..|-.|.+.|+|+-.
T Consensus 27 ~wrl~IL~~L~-~g~~-~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 27 KYTMLIISVLG-NGST-RQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp TTHHHHHHHHT-SSSS-CBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHh-cCCC-CCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34567888885 6666 6 89999999 89999999999999999999643
No 351
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=32.50 E-value=65 Score=28.83 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=44.4
Q ss_pred hhchhH-HHHHHHHHhcC--------------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 17 HFGDLV-AKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 17 ~FG~~v-~~V~~~Ll~~G--------------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+++.. .+++..|+... ++|..+|+...++++..|-..|-.|.+.|+|.
T Consensus 143 ~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 143 AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 778888 99999998753 57899999999999999999999999999997
No 352
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=32.43 E-value=1e+02 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=32.6
Q ss_pred cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 32 ~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.|++|..+|++..++++..|-..+-.|.+.|+|.
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp GGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 5789999999999999999999999999999998
No 353
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=31.86 E-value=33 Score=32.03 Aligned_cols=121 Identities=18% Similarity=0.303 Sum_probs=75.6
Q ss_pred CccHHHHHHHHHhccchhcccccccCCccccHHHHHHHhhhhcc--CCCCCHHHHHHHHHHhccCC--CC--CCCCCeEE
Q 009896 283 DDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEA--GRNMTLDHVRASLVQLGELS--FV--DASSDSYS 356 (523)
Q Consensus 283 ~~~a~~v~~~~L~~~~~~~~~~~~~~s~~~s~~~I~~~l~~~~~--~~~~~~~~i~~~L~~La~~~--~~--~~~~~~y~ 356 (523)
-+-|.+|++.++.... .++.-+++.++...+.+.-. ...++.+.|.+-++.|..=+ |. ..| |.+.
T Consensus 74 ~eLavqIvEvC~~tr~--------~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~-g~~~ 144 (234)
T 3cuq_A 74 YELGVQIIEVCLALKH--------RNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYL 144 (234)
T ss_dssp HHHHHHHHHHHHHHHH--------HHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHHH--------hcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEEC-CEEE
Confidence 3345555665555321 13457888888888865322 14678888888777776421 21 223 4444
Q ss_pred EehHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 357 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 357 V~~~~i~~~lr~~~le~~v~~~~G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
|-.. -.-......+|+.+...+|.+ ....+++....+..-|+..|..|.++|++-+
T Consensus 145 VqSv---------------p~el~~D~~~vLela~~~g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gllwv 200 (234)
T 3cuq_A 145 IQSV---------------PAELNMDHTVVLQLAEKNGYV-TVSEIKASLKWETERARQVLEHLLKEGLAWL 200 (234)
T ss_dssp EECS---------------CCCCCHHHHHHHHHHTTTSEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSCEE
T ss_pred EEeC---------------CCccchHHHHHHHHHHhcCcC-cHHHHHHHhCCCHHHHHHHHHHHHhCCCEEE
Confidence 3111 011223333444444345666 9999999999999999999999999999954
No 354
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=31.70 E-value=78 Score=27.86 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHHh---cC-----CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 9 HAVHVITNHFGDLVAKVCECLLR---KG-----PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~---~G-----~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+...+..-.+.+.-.+|+.+|+. .| ++|..+|+...++++..|-..|-.|.+.|+|.
T Consensus 130 ~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 130 ADLELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 33444555677888999999974 33 56899999999999999999999999999997
No 355
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=31.41 E-value=1.1e+02 Score=26.86 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=38.9
Q ss_pred cCCchHHHHHHHHhh----C----CCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 379 YGRDAYRIFRLLSKS----G----RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 379 ~G~~a~RI~r~L~~k----~----~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
+...--|+.++|... | .+ ..++||+...++...+-.+|.+|.++|+|+.
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKI-THETIANHLGSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 444555666666432 2 55 8999999999999999999999999999965
No 356
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=31.41 E-value=47 Score=32.68 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|+..| ..|+.|+.+|+..+++++..++.-|-.|...|++.
T Consensus 41 i~~~l-~~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~ 80 (374)
T 1qzz_A 41 LVDHL-LAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLE 80 (374)
T ss_dssp HHHHH-HTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEE
Confidence 45666 56899999999999999999999999999999997
No 357
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=31.36 E-value=64 Score=28.78 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=37.1
Q ss_pred HHHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 23 AKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 23 ~~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
..|.+.+-.+| +.|..+|++..+++...|..-|-.|.+.|++.
T Consensus 12 ~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 12 LFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 34555566677 68999999999999999999999999999997
No 358
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=31.27 E-value=30 Score=34.77 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+|+++|..++.+ .-.+|++..-++...+.+++.+|.++|+|.-
T Consensus 19 ~~il~~l~~~~~~-sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPV-SRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSC-CHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4689999888888 9999999999999999999999999999865
No 359
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=31.20 E-value=77 Score=25.85 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHhhcccceEEEEecCCCCceEEE
Q 009896 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFL 442 (523)
Q Consensus 408 i~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~ 442 (523)
++...+-..|.+|.++|+|.....+....|.+.+|
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y 79 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVY 79 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEE
T ss_pred CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEE
Confidence 67789999999999999999887764335667665
No 360
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=31.02 E-value=48 Score=32.42 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|+..| ..|+.|..+|+..+++++..++.-|-.|...|++.
T Consensus 44 i~~~l-~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~ 83 (360)
T 1tw3_A 44 LVDHI-LAGARTVKALAARTDTRPEALLRLIRHLVAIGLLE 83 (360)
T ss_dssp HHHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 45666 56899999999999999999999999999999997
No 361
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=30.97 E-value=37 Score=30.38 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 389 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 389 ~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+.++|.-...++|++...++...++..|..|.+.|||.-
T Consensus 17 ~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEe
Confidence 3445666559999999999999999999999999999964
No 362
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=30.90 E-value=60 Score=30.25 Aligned_cols=47 Identities=15% Similarity=-0.004 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.....+|.+..-..|..|..+|....+.+....+.+|-.|++.|+++
T Consensus 166 ~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lw 212 (233)
T 1u5t_A 166 TSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLW 212 (233)
T ss_dssp CTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSE
T ss_pred chHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 34455566655568999999999999999999999999999999997
No 363
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=30.66 E-value=86 Score=27.79 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=47.5
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhc----C-----------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 9 HAVHVITNHFGDLVAKVCECLLRK----G-----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~~----G-----------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+...+..-.+.+...+++.+|+.. | ++|..+|+...++++..|-..|--|.+.|++.
T Consensus 127 ~~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 127 SLTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 334445556788889999998764 2 67899999999999999999999999999997
No 364
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=30.40 E-value=1.2e+02 Score=26.98 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=47.8
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhcC--------------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 9 HAVHVITNHFGDLVAKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~~G--------------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+...+..-.+.+..++++.+|+... ++|-.+|+...++++..|-..|-.|.+.|++.
T Consensus 148 ~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 148 TTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 3344555677888999999998631 26889999999999999999999999999997
No 365
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=30.38 E-value=55 Score=32.70 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHHc-CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 009896 373 SVVSKRY-GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 427 (523)
Q Consensus 373 ~~v~~~~-G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~ 427 (523)
..+..+. +..+.+|+..|..+ ..+.-+.+++...++...|+..|.+|.+.|+|+
T Consensus 288 ~~~~~~~~~~~~~~ll~~l~~~-p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~ 342 (373)
T 2qc0_A 288 EYVRQQLPKIYSHELVQVIFEQ-PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHHHCTTTCCHHHHHHHHHC-SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHhccchhHHHHHHHHHhC-CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 3344444 56678999999765 445889999999999999999999999999994
No 366
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=30.25 E-value=1.1e+02 Score=27.21 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=47.0
Q ss_pred HHHHHHHhhhchhHHHHHHHHHh----cC----------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 9 HAVHVITNHFGDLVAKVCECLLR----KG----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~----~G----------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+-..+..-.+.+...+++..|+. .| ++|..+|+...++++..|-..|--|.+.|++.
T Consensus 141 ~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 141 AERRTVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLA 211 (232)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 33344455678899999999964 22 57889999999999999999999999999997
No 367
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=29.98 E-value=1.2e+02 Score=27.50 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=48.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHHh----cC-----------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 9 HAVHVITNHFGDLVAKVCECLLR----KG-----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 9 Lc~~iv~~~FG~~v~~V~~~Ll~----~G-----------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+...+..-.+.+.-.+|+.+|+. .| ++|..+|+...|+++..|-..|-.|.+.|+|.
T Consensus 137 ~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~ 208 (250)
T 3e6c_C 137 YARQVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILD 208 (250)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE
Confidence 33445556778899999999975 23 67999999999999999999999999999997
No 368
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=29.91 E-value=34 Score=34.16 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
.+|+++|. ++.+ .-.+|++...++...+.+++.+|.++|+|.-.+
T Consensus 23 ~~il~~l~-~~~~-sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 23 SRILKRIM-KSPV-SRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp CCSHHHHH-HSCB-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHH-cCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 35889998 8888 999999999999999999999999999996544
No 369
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=29.81 E-value=1.1e+02 Score=27.86 Aligned_cols=54 Identities=17% Similarity=0.106 Sum_probs=45.8
Q ss_pred HHHHhhhchhHHHHHHHHHhc---------------CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 12 HVITNHFGDLVAKVCECLLRK---------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 12 ~iv~~~FG~~v~~V~~~Ll~~---------------G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+..-.+.+.-.+|+..|+.. -++|-.+|+..+++++..|-..|--|.+.|+|.
T Consensus 156 ~~~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 156 MIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 334456778889999999852 257889999999999999999999999999997
No 370
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=29.75 E-value=1.3e+02 Score=26.26 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHhc----C----------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 8 KHAVHVITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 8 ~Lc~~iv~~~FG~~v~~V~~~Ll~~----G----------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+...+..-.+.+.-.+++..|+.. | ++|-.+|+...++++..|-..|--|.+.|+|.
T Consensus 106 ~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 106 EAYRRIERLATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3344455567888999999999873 1 36889999999999999999999999999997
No 371
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=29.72 E-value=65 Score=32.26 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=43.4
Q ss_pred HHHHHc-CCchHHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 009896 374 VVSKRY-GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 427 (523)
Q Consensus 374 ~v~~~~-G~~a~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~ 427 (523)
.+++.. +..+.+++++|..++.+ .-+.+++...++...|+..|.+|.+.|+++
T Consensus 289 ~~~~~~~~~~~~~ll~~l~~~p~~-t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~ 342 (373)
T 3eqx_A 289 YVRQQLPKIYSHELVQVIFEQPYC-RIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHHCTTTCCHHHHHHHHHCSEE-EHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHhcCcHHHHHHHHHHHHCCCc-cHHHHHHHhCcCHHHHHHHHHHHHHCCcEE
Confidence 334433 34467899999777665 999999999999999999999999999994
No 372
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=29.68 E-value=38 Score=34.43 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.+|+++|..++.+ .-.+|++...++...+.+++.+|.++|+|.-.
T Consensus 42 ~~il~~l~~~~~~-sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 42 GRVYKLIDQKGPI-SRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 5689999999888 99999999999999999999999999998543
No 373
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=29.38 E-value=75 Score=26.65 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=45.6
Q ss_pred HcCCch--HHHHHHHHh--hCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEc
Q 009896 378 RYGRDA--YRIFRLLSK--SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 447 (523)
Q Consensus 378 ~~G~~a--~RI~r~L~~--k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~ 447 (523)
.||-.. ++|+.+|.. .|.+ ...+|++...++...+-.++.+|.+.|||.-+.-| ...|..+++-.+
T Consensus 30 ~~gLt~~q~~vL~~L~~~~~~~~-t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~---~DrR~~~l~LT~ 99 (147)
T 4b8x_A 30 PYGLTFARYEALVLLTFSKSGEL-PMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNP---NDGRGTLATITD 99 (147)
T ss_dssp GGTCCHHHHHHHHHHHTSGGGEE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-------CEEEEECH
T ss_pred HcCCCHHHHHHHHHHHHCCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecC---CcCceeEEEECH
Confidence 466554 456666642 3456 99999999999999999999999999999654333 335555554443
No 374
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=29.18 E-value=48 Score=30.24 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|....-..|+++..+|++..++++..|..+|-.|.+.|+|.
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~ 51 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLI 51 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 33333357899999999999999999999999999999998
No 375
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=28.92 E-value=1.6e+02 Score=25.93 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHHHcCCchHHHHHHHHhhC--------------CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 373 SVVSKRYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 373 ~~v~~~~G~~a~RI~r~L~~k~--------------~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.+..-.+....-|+.++|..-. .+ ..++||+...++...+-.+|.+|.++|+|+.+
T Consensus 151 ~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~l-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 151 KASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRV-SRQELARLVGCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEC
Confidence 3334445566667777775421 14 78999999999999999999999999999764
No 376
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=28.89 E-value=80 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhc--------CCCHHHHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t--------~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++..+...||-+.|=-|+.+|+..+ ++..+.+....-.|-++|+-+
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~GL~~ 71 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRGLSL 71 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTTCCS
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHcCCCc
Confidence 5678999999999999999999886 588899999999999999854
No 377
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=28.44 E-value=1.7e+02 Score=25.89 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=29.7
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 398 eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
..++||+...++...+-.+|.+|.++|+|+.
T Consensus 182 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 182 SREELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 8999999999999999999999999999965
No 378
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=28.23 E-value=66 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=31.8
Q ss_pred CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 394 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 394 ~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
+.+ ...+|++...|+.......|-+|.+.|+|..
T Consensus 35 ~~~-s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r 68 (96)
T 2obp_A 35 TPW-SLPKIAKRAQLPMSVLRRVLTQLQAAGLADV 68 (96)
T ss_dssp CCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCc-CHHHHHHHhCCchhhHHHHHHHHHHCCCEEe
Confidence 456 9999999999999999999999999999985
No 379
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=28.08 E-value=60 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHH
Q 009896 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNAL 55 (523)
Q Consensus 21 ~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL 55 (523)
--..|..+|..+| .|+.+|++..+++...|+..|
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L 41 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDL 41 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHH
Confidence 3456888888888 899999999999999999976
No 380
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=28.06 E-value=1.7e+02 Score=26.42 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=40.3
Q ss_pred HcCCchHHHHHHHHhh---------------CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 378 RYGRDAYRIFRLLSKS---------------GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 378 ~~G~~a~RI~r~L~~k---------------~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.+...--||.++|..- -.+ ..++||+...++...+-.+|.+|.++|+|+.+
T Consensus 161 ~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~l-t~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 161 AHRDMGSRLVSFLLILCRDFGVPCADGITIDLKL-SHQAIAEAIGSTRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp HCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccC-CHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc
Confidence 3455555776666531 134 89999999999999999999999999999764
No 381
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=27.96 E-value=85 Score=30.64 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|+..|- .|+.|+.+|+..+++++..++.-|-.|..+|++.
T Consensus 56 if~~L~-~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~ 95 (359)
T 1x19_A 56 LFSHMA-EGPKDLATLAADTGSVPPRLEMLLETLRQMRVIN 95 (359)
T ss_dssp HHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHc-CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeE
Confidence 455554 4899999999999999999999999999999997
No 382
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=27.87 E-value=72 Score=28.22 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhcC-CCcHHHHHhhcCCCHHHHHHHHHHHHhhcc-cc
Q 009896 21 LVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNC-VQ 65 (523)
Q Consensus 21 ~v~~V~~~Ll~~G-~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~-V~ 65 (523)
--.+|...|...| +.|..+|++..+++.+.|+.=|-.|-+.|+ +.
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3456777887654 599999999999999999999999999998 64
No 383
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=27.76 E-value=1.2e+02 Score=26.95 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=46.9
Q ss_pred HHHHHHhhhchhHHHHHHHHHhc---------------CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 10 AVHVITNHFGDLVAKVCECLLRK---------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 10 c~~iv~~~FG~~v~~V~~~Ll~~---------------G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
...+..-.+.+...+++..|+.. -++|-.+|+...++++..|-..|-.|.+.|+|.
T Consensus 138 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 208 (227)
T 3d0s_A 138 NNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIR 208 (227)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 33445556788999999998852 147899999999999999999999999999997
No 384
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=27.68 E-value=56 Score=25.80 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccce
Q 009896 105 FDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVE 160 (523)
Q Consensus 105 ~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~ 160 (523)
..+.|..|.+ +..|.-++.+|+..+....+.....-...+..-+..|.+.|||.
T Consensus 41 Ln~~a~~Iw~--l~DG~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 41 LDDIALVVAQ--RYDGTQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp CCTHHHHHHH--HCCSSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHH--HccCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCEe
Confidence 3567888887 57999999999999887654311123457888999999999985
No 385
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=27.66 E-value=1.4e+02 Score=29.24 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=44.2
Q ss_pred HHHHHHhc-CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechh
Q 009896 25 VCECLLRK-GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFD 86 (523)
Q Consensus 25 V~~~Ll~~-G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~ 86 (523)
|+..|... |++|..+|+..+++++..++.-|-.|...+++....... ...|..+.-
T Consensus 33 lfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~------~~~y~~t~~ 89 (353)
T 4a6d_A 33 VFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGG------KAFYRNTEL 89 (353)
T ss_dssp HHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT------EEEEEECHH
T ss_pred HHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCc------cceeeCCHH
Confidence 67788765 789999999999999999999999999999997333321 246776553
No 386
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=27.61 E-value=1.5e+02 Score=25.65 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=41.3
Q ss_pred HHHcCCchHHHHHHHHhhC--------------CCcchhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 376 SKRYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 376 ~~~~G~~a~RI~r~L~~k~--------------~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
.-.+....-||.++|..-. .+ ..++||+...++...+-.+|.+|.++|+|+.+
T Consensus 134 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 134 NLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI-TRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp HHHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhCCHHHHHHHHHHHHHHhcCcCCCCCceEecc-CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC
Confidence 3345556667777765421 24 78999999999999999999999999999764
No 387
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=27.36 E-value=33 Score=35.27 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHcCCch--HHHHHHHHhh--CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEchH
Q 009896 377 KRYGRDA--YRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 449 (523)
Q Consensus 377 ~~~G~~a--~RI~r~L~~k--~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~~~ 449 (523)
+.||--. .+|+++|..+ +.+ ..++|++...++...+=.++-+|.+.|||.=+.-| ...|.++++-.+.-
T Consensus 398 ~~~~lt~~q~~vl~~l~~~~~~~~-~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~---~D~R~~~i~lT~~g 470 (487)
T 1hsj_A 398 KKFNLNYEEIYILNHILRSESNEI-SSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSL---QDERTVIVYVTDTQ 470 (487)
T ss_dssp SSCCCCHHHHHHHHHHHTCSCSEE-EHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECC---SSSSCCEEECCSSH
T ss_pred HhcCCCHHHHHHHHHHHhCCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC---CCCCeEEEEECHHH
Confidence 3455433 5889999877 778 99999999999999999999999999999322222 55677777655533
No 388
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=27.09 E-value=96 Score=25.26 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=27.1
Q ss_pred CCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEc
Q 009896 407 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 447 (523)
Q Consensus 407 mi~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~ 447 (523)
-++...+-..|.+|.++|+|.-...+....|.|.+| ++.
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y--~LT 79 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFY--SLN 79 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEE--EEC
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEE--EEC
Confidence 467788999999999999998877654335667655 454
No 389
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=26.84 E-value=2.1e+02 Score=22.97 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceec
Q 009896 110 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 162 (523)
Q Consensus 110 ~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v 162 (523)
..++-.+|..|-...-++.+.+.......-..+...+..++.+|.++|||.+.
T Consensus 14 ~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 14 NVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34445566679999999988876432111134788999999999999999886
No 390
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=26.74 E-value=81 Score=27.77 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhc-CC----CcHH-H-HHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEech
Q 009896 21 LVAKVCECLLRK-GP----LTRQ-N-VKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLF 85 (523)
Q Consensus 21 ~v~~V~~~Ll~~-G~----ltl~-~-l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~ 85 (523)
+.++|.+.+-.. |. .|.. + +.+..+.+....+..|-.+++.|+++ .....+ . ..|..|.
T Consensus 100 ~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~-~D~~~~----G-~~y~~N~ 165 (169)
T 1u5t_B 100 VKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLL-IDKQLS----G-IYYYKNS 165 (169)
T ss_dssp HHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEE-EEECSS----C-EEEEECC
T ss_pred HHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEE-EECCCC----c-ceEEeee
Confidence 445666666555 66 6887 8 88999999999999999999999997 333322 1 5666664
No 391
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=26.72 E-value=45 Score=30.35 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 34 PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 34 ~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++|-.+|+...+++..-||.||..|.+.|+|.
T Consensus 39 ~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~ 70 (222)
T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRLAAEGIVD 70 (222)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 78888999999999999999999999999998
No 392
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=26.43 E-value=1.7e+02 Score=26.74 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=71.6
Q ss_pred CccccHHHHHHHhhhhccCCCCCHHHHHHHHHHhccCC--C--CCCCCCeEEEehHHHHHHHHHHHHHHHHHHHcCCchH
Q 009896 309 SVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--F--VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAY 384 (523)
Q Consensus 309 s~~~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~~~--~--~~~~~~~y~V~~~~i~~~lr~~~le~~v~~~~G~~a~ 384 (523)
+.-+++.++...+.+.-...-++++.+.+.++.|..-. | ...++|.+.|--..-- ......
T Consensus 93 GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~---------------~~~~~~ 157 (218)
T 3cuq_B 93 GGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHK---------------EEEMVA 157 (218)
T ss_dssp TSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCC---------------GGGGHH
T ss_pred CCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCc---------------hHHHHH
Confidence 44688889888887644323478888988888886543 2 1345567655322100 111223
Q ss_pred HHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceEEE
Q 009896 385 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 430 (523)
Q Consensus 385 RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQE 430 (523)
+|..++...|.. +..+++.....+..-|++.|..|..+|++-+=+
T Consensus 158 ~il~~~~~~g~v-t~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 158 SALETVSEKGSL-TSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp HHHHHHHHTSCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCc-CHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 344444334666 999999999999999999999999999996644
No 393
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=26.36 E-value=2.4e+02 Score=22.22 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCCcHHHHHhh----cCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 23 AKVCECLLRKGPLTRQNVKRY----TELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 23 ~~V~~~Ll~~G~ltl~~l~~~----t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
-.|-..|. .|+.+-.+|.+. .++++..|-..|-.|.+.|+|.....+. ++ +...+|.+-..+
T Consensus 12 ~~IL~~L~-~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~-~~-r~r~~y~LT~~G 77 (108)
T 3l7w_A 12 YLILAIVS-KHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEH-QG-RRRKYYHLTDSG 77 (108)
T ss_dssp HHHHHHHH-HSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEE-TT-EEEEEEEECHHH
T ss_pred HHHHHHHH-cCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecC-CC-CcceEEEECHHH
Confidence 34444454 577777777665 5899999999999999999998443322 22 234688887665
No 394
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=26.20 E-value=1.2e+02 Score=26.15 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHcCCchHHHHHHHHhh----C----------CCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 377 KRYGRDAYRIFRLLSKS----G----------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 377 ~~~G~~a~RI~r~L~~k----~----------~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
-.+...--|+.++|..- | .+ ..++||+...++...+-.+|.+|.++|+|..
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 171 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTV-SHEEIADATASIRESVSKVLADLRREGLIAT 171 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEEC-CHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 34455556777666541 1 24 8899999999999999999999999999965
No 395
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.07 E-value=1.3e+02 Score=24.04 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 108 QCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 108 ~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
.-|.|+.-.=....++-.+|+..+.+... -..+...++..+..|++.+||.|.+
T Consensus 32 iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~ 85 (101)
T 2do7_A 32 IDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDK 85 (101)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCC
Confidence 45667777777888888888877765432 1236788999999999999999985
No 396
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=26.05 E-value=1.3e+02 Score=26.11 Aligned_cols=53 Identities=32% Similarity=0.322 Sum_probs=44.4
Q ss_pred HHHhhhchhHHHHHHHHHhc----C----------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 13 VITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 13 iv~~~FG~~v~~V~~~Ll~~----G----------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+..-.+.+...+++..|+.. | ++|..+|+...++++..|-..|--|.+.|+|.
T Consensus 129 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 129 VGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 33446788889999988631 1 46889999999999999999999999999997
No 397
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=25.96 E-value=1.4e+02 Score=28.40 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=39.3
Q ss_pred HHhc-CCCcHHHHHhh---cCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 29 LLRK-GPLTRQNVKRY---TELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 29 Ll~~-G~ltl~~l~~~---t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
+..+ |.+++..|++. .+++...||.||..|.+.|.+..-... ...+|.+....
T Consensus 36 ~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~G------r~~~Y~Lt~~g 92 (266)
T 3l09_A 36 SRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRRLG------RVGFHRLSDSA 92 (266)
T ss_dssp HHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET------TEEEEEECHHH
T ss_pred hccCCCcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeeeeecC------CcceEEECHHH
Confidence 3455 57899987665 789999999999999999999732221 13588875544
No 398
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=25.51 E-value=1.2e+02 Score=24.55 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHhhcccceEEEEecCCCCceEEE
Q 009896 408 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFL 442 (523)
Q Consensus 408 i~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~ 442 (523)
++...+-..|.+|.++|+|.-...+....|.|.+|
T Consensus 40 is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y 74 (115)
T 4esb_A 40 VSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYY 74 (115)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEE
T ss_pred CCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEE
Confidence 67788899999999999998877665435666654
No 399
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=25.45 E-value=72 Score=30.75 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 25 V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|++.|- .|+.|..+|+..+++++..++.-|-.|..+|++.
T Consensus 30 lf~~l~-~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~ 69 (332)
T 3i53_A 30 VADHIA-AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFT 69 (332)
T ss_dssp HHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEE
Confidence 666664 5899999999999999999999999999999997
No 400
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Probab=25.37 E-value=32 Score=32.27 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=24.8
Q ss_pred ccHHHHH-HHHhhcccceEEEEecCCCCceEEEEEEE
Q 009896 411 KDAPKIL-YKLWKDGYLLMEKLVVTGARQSQFLLWKV 446 (523)
Q Consensus 411 k~~R~~L-~~L~~~g~v~lQEvpk~~~~~~t~~lw~v 446 (523)
-+.|++| ..|.++||++-+.||.+ .|.+..|+|--
T Consensus 164 G~~rklit~~~Vkq~YLe~~qv~~s-dp~~~ef~WGp 199 (240)
T 2wa0_A 164 GEPRKLLTQDWVQENYLEYRQVPGS-NPARYEFLWGP 199 (240)
T ss_dssp BCHHHHHHTHHHHTTSEEEECC-------CCEEEECH
T ss_pred CCHHHHHHHHHHHcCCeEEEeecCC-CCCeEEEEEcC
Confidence 3589999 78999999999998877 67788899963
No 401
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=25.37 E-value=1.2e+02 Score=24.75 Aligned_cols=53 Identities=4% Similarity=-0.002 Sum_probs=40.0
Q ss_pred HHHhhHHHHHHHHHHHHcCcCCHHHHHHH---hhhcccCCCccCHHHHHHHHHHHHhcccc
Q 009896 102 SQEFDQQCVELVQGLLEHGRLTLKQMFDR---AKSSEKEGNLVDLDSLRETLVKLVTAHYV 159 (523)
Q Consensus 102 ~~~~G~~a~~I~~~lL~~G~~~~~~li~~---~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi 159 (523)
++.=.++-..|+..|...|.++-.+|-.. +....+ +.++|...-.+|...||=
T Consensus 39 r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~P-----s~eDI~RV~arLaa~GWP 94 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMP-----REEDIERVRRHLALQGWP 94 (112)
T ss_dssp TTCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCC-----CHHHHHHHHHHHHTTCCG
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCC-----CHHHHHHHHHHHHhcCCC
Confidence 44556788899999999998885555444 443333 678899999999999995
No 402
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=25.21 E-value=53 Score=29.14 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhc-CCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhh
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDN 87 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t-~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~ 87 (523)
|+=-+|...| ..|++|..+|.... +++...|-+=|-+|-++|+|..-.....+| ...-+|.++...
T Consensus 23 P~Rl~il~~L-~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g-~~er~y~~~~~~ 89 (182)
T 4g6q_A 23 PLRWRITQLL-IGRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRG-AVERTYTLNTQA 89 (182)
T ss_dssp HHHHHHHHHT-TTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETT-EEEEEEEECTTT
T ss_pred HHHHHHHHHH-HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccC-cceeEEEecccc
Confidence 5555666655 67999999999887 499999999999999999998333322121 123477776654
No 403
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=25.20 E-value=2e+02 Score=24.93 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=41.7
Q ss_pred HHHcCCchHHHHHHHHhhC--------------CCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 376 SKRYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 376 ~~~~G~~a~RI~r~L~~k~--------------~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.-.+...--|+.++|..-. .+ .+++||+...++...+-.+|.+|.++|+|+.
T Consensus 113 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 113 RLATQRLKNRMAAALLELSETPLAHEEEGKVVLKA-THDELAAAVGSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp HHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 3445666678888776521 24 8899999999999999999999999999975
No 404
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=24.63 E-value=1.3e+02 Score=25.80 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCC------CccCHHHHHHHHHHHHhcccceecC
Q 009896 106 DQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEG------NLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 106 G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~------~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
-..++.++..++..|..-..++.+.+..+...| ...+..-+++++.+|...|+|...|
T Consensus 52 y~ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 52 YYRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC
Confidence 355777888888888555666665554321111 1236788999999999999999875
No 405
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=24.58 E-value=1e+02 Score=23.01 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhc--------CCCHHHHHHHHHHHHhhccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCV 64 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t--------~l~~~~vr~aL~vLiQhn~V 64 (523)
++..+...||-+.|=-|+.+|++.+ ++.++.+....-.|-++|+-
T Consensus 15 ~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~gl~ 67 (73)
T 1z3e_B 15 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLG 67 (73)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Confidence 5778999999999999999998875 57888888888888888764
No 406
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=24.42 E-value=1.4e+02 Score=25.56 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=41.5
Q ss_pred HHHhcCCCcHHHHHhhc-------CCCHHHHHHHHHHHHhhcccccccccC-CCCCCcceEEEechhh
Q 009896 28 CLLRKGPLTRQNVKRYT-------ELSDEQVKNALLVLIQQNCVQAFTTEQ-PDGPKANTQYVVLFDN 87 (523)
Q Consensus 28 ~Ll~~G~ltl~~l~~~t-------~l~~~~vr~aL~vLiQhn~V~~~~~~~-~~~~~~~~~Y~~~~~~ 87 (523)
.++..|+..-.+|.+.. +++...+...|-.|.+.|+|....... ++|+ ...+|.+-..+
T Consensus 51 ~lL~~~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~-~rk~Y~LT~~G 117 (148)
T 2zfw_A 51 AVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGR-PRRMYQLAQAN 117 (148)
T ss_dssp HHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSC-CCCEEEESSSS
T ss_pred HHHHhCCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCC-CcEEEEECHHH
Confidence 34456888877776553 589999999999999999998433222 1222 34689987765
No 407
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=24.21 E-value=2.2e+02 Score=25.09 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHcCCchHHHHHHHHhh---------------CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 377 KRYGRDAYRIFRLLSKS---------------GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 377 ~~~G~~a~RI~r~L~~k---------------~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
-.+....-|+.++|..- -.+ ..++||+...++...+-.+|.+|.++|+|..
T Consensus 144 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~-t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 144 LIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDL-TQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 34455556666666531 134 8999999999999999999999999999966
No 408
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.95 E-value=1.6e+02 Score=26.57 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=41.1
Q ss_pred HHHcCCchHHHHHHHHh----h-----------CCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 376 SKRYGRDAYRIFRLLSK----S-----------GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 376 ~~~~G~~a~RI~r~L~~----k-----------~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.-.+...-.||.++|.. . -.+ ..++||+...++...+-.+|.+|.++|+|+.
T Consensus 143 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~-t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~ 209 (250)
T 3e6c_C 143 EMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPL-SQKSIGEITGVHHVTVSRVLASLKRENILDK 209 (250)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe
Confidence 34455566677777743 1 145 8999999999999999999999999999965
No 409
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.59 E-value=1.1e+02 Score=26.85 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=37.1
Q ss_pred chHHHHHHHHh---hC-----CCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 382 DAYRIFRLLSK---SG-----RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 382 ~a~RI~r~L~~---k~-----~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.--|+.++|.. .+ .+ ..++||+...++...+-.+|.+|.++|+|+.
T Consensus 142 ~~~Rl~~~L~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 142 ARNRVAYALLKLLRQGLGPLFQI-RHHELAALAGTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhhcCCccCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 34566666642 22 34 8999999999999999999999999999965
No 410
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=23.58 E-value=79 Score=31.07 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=51.9
Q ss_pred HHHHHHHhhhchhHHH---------HHHHHHh-cCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccccccccCCCCCCcc
Q 009896 9 HAVHVITNHFGDLVAK---------VCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKAN 78 (523)
Q Consensus 9 Lc~~iv~~~FG~~v~~---------V~~~Ll~-~G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~ 78 (523)
-+..+.+-.||..... |+..|-. .|+.|+.+|+..+++++..++.-|-.|.-.|++.. . +
T Consensus 15 a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~-~-~-------- 84 (363)
T 3dp7_A 15 AQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILL-E-E-------- 84 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE-E-T--------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEe-c-C--------
Confidence 3455666667776654 4455555 48999999999999999999999999999999962 2 1
Q ss_pred eEEEechhh
Q 009896 79 TQYVVLFDN 87 (523)
Q Consensus 79 ~~Y~~~~~~ 87 (523)
-.|......
T Consensus 85 ~~y~~t~~s 93 (363)
T 3dp7_A 85 DRYVLAKAG 93 (363)
T ss_dssp TEEEECHHH
T ss_pred CEEecccch
Confidence 167766654
No 411
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=23.58 E-value=2.2e+02 Score=25.39 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHh---------------hC-CCcchhhhhhhcCCCc-ccHHHHHHHHh
Q 009896 359 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSK---------------SG-RLLETDKISDTTFVEK-KDAPKILYKLW 421 (523)
Q Consensus 359 ~~~i~~~lr~~~le~~v~~~~G~~a~RI~r~L~~---------------k~-~l~eek~i~~~ami~~-k~~R~~L~~L~ 421 (523)
+-+.+..--....+.+..-.+...-.||.++|.. .- .+ ..++||+...++. ..+-.+|.+|.
T Consensus 117 ~~~~l~~~l~~~~~~~~~~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~-t~~~lA~~lG~sr~etvsR~l~~l~ 195 (238)
T 2bgc_A 117 VFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNL-TMQELGYSSGIAHSSAVSRIISKLK 195 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCC-CHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccC-CHHHHHHHhCCChHHHHHHHHHHHH
Q ss_pred hcccceEE
Q 009896 422 KDGYLLME 429 (523)
Q Consensus 422 ~~g~v~lQ 429 (523)
++|+|...
T Consensus 196 ~~glI~~~ 203 (238)
T 2bgc_A 196 QEKVIVYK 203 (238)
T ss_dssp HTTSEEEE
T ss_pred HCCCEEec
No 412
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=23.51 E-value=2.5e+02 Score=24.16 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=30.1
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceEE
Q 009896 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 429 (523)
Q Consensus 398 eek~i~~~ami~~k~~R~~L~~L~~~g~v~lQ 429 (523)
..++||+...++...+-.+|.+|.++|+|+..
T Consensus 166 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 166 TRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 88999999999999999999999999999764
No 413
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=23.35 E-value=69 Score=28.69 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=29.7
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 398 eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
..++||+...++...+-.+|.+|.++|+|+.
T Consensus 177 t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 177 GTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 8999999999999999999999999999975
No 414
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=23.32 E-value=71 Score=27.55 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhcC--------------CCHHHHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYTE--------------LSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t~--------------l~~~~vr~aL~vLiQhn~V~ 65 (523)
.-++.+...++.+|+....+|....+ .+...||.||-.|.+.|+|.
T Consensus 53 ~ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~ 112 (150)
T 2v7f_A 53 YRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVE 112 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEE
Confidence 34455555666677667788988888 99999999999999999997
No 415
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.19 E-value=1.1e+02 Score=24.15 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=36.3
Q ss_pred HHHHHHHHhhCC--CcchhhhhhhcCCCcccHHHHHHHHhhcccce
Q 009896 384 YRIFRLLSKSGR--LLETDKISDTTFVEKKDAPKILYKLWKDGYLL 427 (523)
Q Consensus 384 ~RI~r~L~~k~~--l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~ 427 (523)
..|+.++...|. + -.++|....-|+...+-.+|-.|...|||.
T Consensus 40 ~lVy~~I~~aGn~GI-w~kdL~~~tnL~~~~vtkiLK~LE~k~lIK 84 (95)
T 2yu3_A 40 KLVYQIIEDAGNKGI-WSRDVRYKSNLPLTEINKILKNLESKKLIK 84 (95)
T ss_dssp HHHHHHHHHHTTSCE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhCCCEE
Confidence 356667766443 6 999999999999999999999999999983
No 416
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=23.15 E-value=58 Score=30.10 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=31.4
Q ss_pred CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 33 G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++++..+|+...+++...||.||..|.+.|+|.
T Consensus 48 ~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~ 80 (237)
T 3c7j_A 48 TALRQQELATLFGVSRMPVREALRQLEAQSLLR 80 (237)
T ss_dssp CBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 478999999999999999999999999999997
No 417
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=23.14 E-value=1.8e+02 Score=25.53 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=44.7
Q ss_pred HHHHhhhchhHHHHHHHHHhc------------CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 12 HVITNHFGDLVAKVCECLLRK------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 12 ~iv~~~FG~~v~~V~~~Ll~~------------G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.+..-.+.+.-.+++..|+.. -++|..+|+...|+++..|-..|--|.+.|++.
T Consensus 144 ~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 144 EIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 344455678889999988652 145778999999999999999999999999997
No 418
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=23.09 E-value=1.1e+02 Score=25.10 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHhcCC-CcHHHHHhhcCCCHHHHHHHHHHHHhhccccccc
Q 009896 19 GDLVAKVCECLLRKGP-LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~-ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~~~~ 68 (523)
|+....|...|-..|. .+..+|.+.++++..++...|-.|+..+=|..+.
T Consensus 1 ~~~~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~ 51 (135)
T 2v9v_A 1 GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLR 51 (135)
T ss_dssp CCHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 4455556666666654 3349999999999999999999999888766454
No 419
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=22.99 E-value=97 Score=31.59 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=39.6
Q ss_pred HHHHHHHhc--CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 24 KVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 24 ~V~~~Ll~~--G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.|-.+|..+ |++|..+|.+.++++...|-..|-.|.+.|+|.
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~ 451 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLS 451 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 577888888 999999999999999999999999999999998
No 420
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=22.95 E-value=1.6e+02 Score=25.64 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=38.0
Q ss_pred HHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009896 112 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 163 (523)
Q Consensus 112 I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi~~v~ 163 (523)
.+-.+|..|-++..++.+.+.......-..+...+..++.+|.++|||.+..
T Consensus 6 ~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 6 VILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 3445556699999999888754321111347889999999999999998863
No 421
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=22.83 E-value=2.2e+02 Score=21.61 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCC----CcHHHHHhh--------cCCCHHHHHHHHHHHHhhccccccccc
Q 009896 21 LVAKVCECLLRKGP----LTRQNVKRY--------TELSDEQVKNALLVLIQQNCVQAFTTE 70 (523)
Q Consensus 21 ~v~~V~~~Ll~~G~----ltl~~l~~~--------t~l~~~~vr~aL~vLiQhn~V~~~~~~ 70 (523)
-+..|.+..-..|. +|+-+|..- -+++...++.||-+|.+.|=+.-|..+
T Consensus 10 Wa~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~~ 71 (79)
T 3htu_A 10 WGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITVS 71 (79)
T ss_dssp HHHHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 45566667777775 489999873 269999999999999999987756544
No 422
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=22.82 E-value=1.1e+02 Score=24.41 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=29.2
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 398 eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+.+|++.-.++...+|+.|..|..+|+|..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~~ 65 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIEK 65 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 7899999999999999999999999999854
No 423
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=22.79 E-value=2.9e+02 Score=22.02 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhhc------C--CCH-HHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhHH
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRYT------E--LSD-EQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNIL 89 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~t------~--l~~-~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~il 89 (523)
|.+--.|-..|.. |+.+..+|.+.. . +++ ..|-..|-.|.+.|+|.....+.++.++ .+|++-..+
T Consensus 12 ~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r--~~Y~LT~~G-- 86 (118)
T 2esh_A 12 WWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPR--KIYRITPQG-- 86 (118)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCE--EEEEECHHH--
T ss_pred chHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCc--eEEEEChHH--
Q ss_pred HHhchhhHHHHHHHHhhHHHHHH
Q 009896 90 HRVRFAKFLTILSQEFDQQCVEL 112 (523)
Q Consensus 90 ~rlR~p~~i~~i~~~~G~~a~~I 112 (523)
+-.++.++.............+
T Consensus 87 -~~~l~~~~~~~~~~~~~~~~~l 108 (118)
T 2esh_A 87 -KLYLREILRSLEDMKRRIETLE 108 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
No 424
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=22.77 E-value=36 Score=31.05 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=34.9
Q ss_pred HHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 386 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 386 I~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
|+.+...++.+ ..++|++...++...+...+.+|.+.|||.-
T Consensus 11 I~~l~~~~~~~-~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r 52 (214)
T 3hrs_A 11 LYELGTRHNKI-TNKEIAQLMQVSPPAVTEMMKKLLAEELLIK 52 (214)
T ss_dssp HHHTTSSCSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCc-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEE
Confidence 44444344555 9999999999999999999999999999954
No 425
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=22.76 E-value=67 Score=28.45 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhccc-ceE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY-LLM 428 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~-v~l 428 (523)
.+|+++|...+..+.-++|++...++...++.-+..|...|+ |.-
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 468888876555339999999999999999999999999999 743
No 426
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=22.65 E-value=1.3e+02 Score=27.61 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=46.2
Q ss_pred HHHHHhhhchhHHHHHHHHHhc----C----------CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 11 VHVITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 11 ~~iv~~~FG~~v~~V~~~Ll~~----G----------~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
..+..-.+.+...+|+..|+.. | ++|..+|+...++++..|-..|--|.+.|+|.
T Consensus 180 ~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 180 EKVGNLAFLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3444556788889999998752 1 57889999999999999999999999999997
No 427
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=22.44 E-value=78 Score=24.19 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHhhc--------CCCHHHHHHHHHHHHhhcccc
Q 009896 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 20 ~~v~~V~~~Ll~~G~ltl~~l~~~t--------~l~~~~vr~aL~vLiQhn~V~ 65 (523)
++..+...||-+.|=-|+.+|+..+ ++.++.+....-.|-++|+-+
T Consensus 22 ~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~Gl~l 75 (79)
T 3gfk_B 22 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGL 75 (79)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHcCCCC
Confidence 5678999999999999999998875 467788888888888888753
No 428
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=22.37 E-value=80 Score=27.93 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCCcchhhhhhhc-CCCcccHHHHHHHHhhcccceEEEEec
Q 009896 384 YRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKLVV 433 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~a-mi~~k~~R~~L~~L~~~g~v~lQEvpk 433 (523)
.||+++| .+|.+ .-.+|++.. .+|...+-.-|..|.+.|+|+..+-.+
T Consensus 26 l~il~~L-~~~~~-~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~ 74 (182)
T 4g6q_A 26 WRITQLL-IGRSL-TTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQ 74 (182)
T ss_dssp HHHHHHT-TTSCE-EHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEE
T ss_pred HHHHHHH-HhCCC-CHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeec
Confidence 5788888 45777 889999887 499999999999999999998765544
No 429
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=22.16 E-value=1.1e+02 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=29.3
Q ss_pred chhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 398 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 398 eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+.+|++.-.++...+|+.|..|..+|+|..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 7899999999999999999999999999955
No 430
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=22.02 E-value=46 Score=30.15 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=30.3
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 34 PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 34 ~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
+++-.+|+...+++...||.||..|.+.|+|.
T Consensus 35 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~ 66 (218)
T 3sxy_A 35 KLNVRELSEKLGISFTPVRDALLQLATEGLVK 66 (218)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67788999999999999999999999999997
No 431
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=21.96 E-value=2.1e+02 Score=23.98 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHhcCCCcHHHHHhhc-------CCCHHHHHHHHHHHHhhcccccccccC-CCCCCcceEEEechhh
Q 009896 29 LLRKGPLTRQNVKRYT-------ELSDEQVKNALLVLIQQNCVQAFTTEQ-PDGPKANTQYVVLFDN 87 (523)
Q Consensus 29 Ll~~G~ltl~~l~~~t-------~l~~~~vr~aL~vLiQhn~V~~~~~~~-~~~~~~~~~Y~~~~~~ 87 (523)
++..|+..-.+|.+.. +++...+...|-.|.+.|+|....... +++ +...+|++-..+
T Consensus 42 lL~~~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g-~~rk~Y~LT~~G 107 (138)
T 2e1n_A 42 VLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRG-RPRRMYQLAQAN 107 (138)
T ss_dssp HHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCS-SCEEEEEESCSC
T ss_pred HHHhCCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecccCCC-CCcEEEEECHHH
Confidence 4456777777765543 589999999999999999998433222 122 235799987765
No 432
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=21.83 E-value=2.5e+02 Score=21.86 Aligned_cols=48 Identities=6% Similarity=-0.002 Sum_probs=35.7
Q ss_pred HHHHHHhhhc---------------hhHHHHHHHHHhc-CCCcHHHHHhhc-CCCHHHHHHHHHH
Q 009896 10 AVHVITNHFG---------------DLVAKVCECLLRK-GPLTRQNVKRYT-ELSDEQVKNALLV 57 (523)
Q Consensus 10 c~~iv~~~FG---------------~~v~~V~~~Ll~~-G~ltl~~l~~~t-~l~~~~vr~aL~v 57 (523)
....|.++|| -.+..|+-+|... ..+||++|.+.. +-+...|-+|+-.
T Consensus 6 I~~~Va~~f~i~~~dl~s~~R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~k 70 (94)
T 1j1v_A 6 IQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHhCCCCCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456778888 3456688888876 688999999988 6787777766543
No 433
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.46 E-value=2.6e+02 Score=22.84 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=35.5
Q ss_pred HHHHHhhhchhHHHHHHHHHhcCCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 009896 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLI 59 (523)
Q Consensus 11 ~~iv~~~FG~~v~~V~~~Ll~~G~ltl~~l~~~t~l~~~~vr~aL~vLi 59 (523)
...+.+.+.+.-..|+. +. ...+|..+|+...+++.+.|++.+....
T Consensus 103 ~~~l~~~L~~~~r~v~~-~~-~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 103 KKFSENNFSKFEKEVLT-YL-IRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHHHHHHSCHHHHHHHH-HH-TTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHH-HH-HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444577788888888 54 4557999999999999999887765443
No 434
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=21.34 E-value=1.3e+02 Score=24.22 Aligned_cols=56 Identities=7% Similarity=0.073 Sum_probs=41.6
Q ss_pred HHHhhHHHHHHHHHHHHcCcCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccc
Q 009896 102 SQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 159 (523)
Q Consensus 102 ~~~~G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~i~~~f~~Lv~~~fi 159 (523)
++.=.++-..|+..|...|.++-.+|-..+..-.. ...+.++|...-.+|...||=
T Consensus 37 r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~--~~Ps~eDI~RV~arLaa~GWP 92 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTD--ELPSPEDVERVRARLAAQGWP 92 (103)
T ss_dssp TTSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCS--SCSCHHHHHHHHHHHGGGCCC
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHhcCCC
Confidence 44556788999999999998887776665543211 122688999999999999994
No 435
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=21.11 E-value=1.1e+02 Score=25.65 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=32.6
Q ss_pred HHHHHHhc-----CCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 25 VCECLLRK-----GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 25 V~~~Ll~~-----G~ltl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
|-.+|..+ |++|..+|.+..++++..|-..+-.|.+.|+|.
T Consensus 38 vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 38 TLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp HHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 44455444 458999999999999999999999999999995
No 436
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=20.97 E-value=3.4e+02 Score=22.10 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHhcCCCcHHHHHhh-----cCCCHHHHHHHHHHHHhhcccccccccCCCCCCcceEEEechhhH
Q 009896 19 GDLVAKVCECLLRKGPLTRQNVKRY-----TELSDEQVKNALLVLIQQNCVQAFTTEQPDGPKANTQYVVLFDNI 88 (523)
Q Consensus 19 G~~v~~V~~~Ll~~G~ltl~~l~~~-----t~l~~~~vr~aL~vLiQhn~V~~~~~~~~~~~~~~~~Y~~~~~~i 88 (523)
|.+--.|-..| . |+.+-.+|.+. .++++..|-..|-.|.+.|+|.......++ +...+|.+-..+-
T Consensus 20 g~l~~~IL~lL-~-~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~--~~rk~Y~LT~~Gr 90 (123)
T 3ri2_A 20 GTLVMLVLSQL-R-EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGS--KPRKYYRTTDEGL 90 (123)
T ss_dssp HHHHHHHHHHT-T-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSS--CEEEEEEECHHHH
T ss_pred CcHHHHHHHHH-c-CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCC--CCceEEEECHHHH
Confidence 44455555555 4 88888888766 489999999999999999999843322222 3457899877763
No 437
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=20.89 E-value=88 Score=29.11 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCC-cHHHHHhhcCCCHHHHHHHHHHHHhhcccc
Q 009896 33 GPL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (523)
Q Consensus 33 G~l-tl~~l~~~t~l~~~~vr~aL~vLiQhn~V~ 65 (523)
.++ +-.+|+...+++...||+||-.|.+.|+|.
T Consensus 34 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~ 67 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVRQALRELLIDGRVE 67 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 366 789999999999999999999999999997
No 438
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=20.76 E-value=1.6e+02 Score=23.76 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHhhcccceEEEEecCCCCceEEEEEEEc
Q 009896 407 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 447 (523)
Q Consensus 407 mi~~k~~R~~L~~L~~~g~v~lQEvpk~~~~~~t~~lw~v~ 447 (523)
-++....-..|.+|.++|+|.-...+....|.|.+| ++.
T Consensus 43 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y--~lT 81 (116)
T 3hhh_A 43 EIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFY--RLT 81 (116)
T ss_dssp SCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEE--EEC
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEE--EEC
Confidence 467788899999999999998877664435667655 444
No 439
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=20.19 E-value=22 Score=35.22 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCcchhhhhhhcCCCcccHHHHHHHHhhcccceE
Q 009896 384 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 428 (523)
Q Consensus 384 ~RI~r~L~~k~~l~eek~i~~~ami~~k~~R~~L~~L~~~g~v~l 428 (523)
.+|+..|..++.+ .+++|++...++...+|..|.+|.+.|+|+.
T Consensus 23 ~~iL~~l~~~~~~-t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 23 FQILRNIYWMQPI-GRRSLSETMGITERVLRTETDVLKQLNLIEP 66 (345)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4677788777777 9999999999999999999999999999964
Done!