BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009897
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 43/216 (19%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW---SQTIESTKLQTPKSFYQFS- 88
+ ++GAG++GL A G FEA SG+GGVW +++ Y FS
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 89 ----DFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHS 144
++ W +E + +++ YL+ A F+L I+FDT+VTS + DE
Sbjct: 84 ELEQEWNW----SEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTS------AVLDEEG 133
Query: 145 WDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKG 204
+W V VS+ F+++ G S+ NTP F G
Sbjct: 134 L--------------RWTVRTDRGDEVSAR-------FLVVAAGPLSNA-NTPAF---DG 168
Query: 205 PEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAV 240
+ F G ++H+ GKRV VIG S +
Sbjct: 169 LDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGI 204
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 43/216 (19%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW---SQTIESTKLQTPKSFYQFS- 88
+ ++GAG++GL A G FEA SG+GGVW +++ Y FS
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 89 ----DFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHS 144
++ W +E + +++ YL+ A F+L I+FDT+VTS + DE
Sbjct: 84 ELEQEWNW----SEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTS------AVLDEEG 133
Query: 145 WDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKG 204
+W V VS+ F+++ G S+ NTP F G
Sbjct: 134 L--------------RWTVRTDRGDEVSAR-------FLVVAAGPLSNA-NTPAF---DG 168
Query: 205 PEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAV 240
+ F G ++H+ GKRV VIG S +
Sbjct: 169 LDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGI 204
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 43/216 (19%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW---SQTIESTKLQTPKSFYQFS- 88
+ ++GAG++GL A G FEA SG+GGVW +++ Y FS
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP 83
Query: 89 ----DFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHS 144
++ W +E + +++ YL+ A F+L I+FDT+VTS + DE
Sbjct: 84 ELEQEWNW----SEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTS------AVLDEEG 133
Query: 145 WDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKG 204
+W V VS+ F+++ G S+ NTP F G
Sbjct: 134 L--------------RWTVRTDRGDEVSAR-------FLVVAAGPLSNA-NTPAF---DG 168
Query: 205 PEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAV 240
+ F G ++H+ GKRV VIG S +
Sbjct: 169 LDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGI 204
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 46/250 (18%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW--------SQTIESTKL 78
P E + ++GAG SGL A E G V E +GGVW IES +
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEY 72
Query: 79 QTPKSFYQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPS 138
S ++ W TE + +++ Y+ A F+L I F T VT+
Sbjct: 73 CYSFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTA----AAF 124
Query: 139 DEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPD 198
DE ++ W V + + ++I+ G+ S +P P+
Sbjct: 125 DE----------------ATNTWTVDTNHGDRI-------RARYLIMASGQLS-VPQLPN 160
Query: 199 FPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTL 258
FP G + F G + H+ N +G+RV VIG S + V+ ++A + + +
Sbjct: 161 FP---GLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELF---V 214
Query: 259 LFKTVHWMVP 268
+T H+ VP
Sbjct: 215 FQRTPHFAVP 224
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 46/250 (18%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT--------IESTKL 78
P E + ++GAG SGL A E G V E +GGVW IES +
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEY 72
Query: 79 QTPKSFYQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPS 138
S ++ W TE + +++ Y+ A F+L I F T VT+
Sbjct: 73 CYSFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTA----AAF 124
Query: 139 DEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPD 198
DE ++ W V + + ++I+ G+ S +P P+
Sbjct: 125 DE----------------ATNTWTVDTNHGDRI-------RARYLIMASGQLS-VPQLPN 160
Query: 199 FPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTL 258
FP G + F G + H+ N +G+RV VIG S + V+ ++A + + +
Sbjct: 161 FP---GLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELF---V 214
Query: 259 LFKTVHWMVP 268
+T H+ VP
Sbjct: 215 FQRTPHFAVP 224
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 46/250 (18%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT--------IESTKL 78
P E + ++GAG SGL A E G V E +GGVW IES +
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEY 72
Query: 79 QTPKSFYQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPS 138
S ++ W TE + +++ Y+ A F+L I F T VT+
Sbjct: 73 CYSFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTA----AAF 124
Query: 139 DEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPD 198
DE ++ W V + + ++I+ G+ S +P P+
Sbjct: 125 DE----------------ATNTWTVDTNHGDRI-------RARYLIMASGQLS-VPQLPN 160
Query: 199 FPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTL 258
FP G + F G + H+ N +G+RV VIG S + V+ ++A + + +
Sbjct: 161 FP---GLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELF---V 214
Query: 259 LFKTVHWMVP 268
+T H+ VP
Sbjct: 215 FQRTPHFAVP 224
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 46/250 (18%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT--------IESTKL 78
P E + ++GAG SGL A E G V E +GGVW IES +
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEY 72
Query: 79 QTPKSFYQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPS 138
S ++ W TE + +++ Y+ A F+L I F T VT+
Sbjct: 73 CYSFSEEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTA----AAF 124
Query: 139 DEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPD 198
DE ++ W V + + ++I+ G+ S +P P+
Sbjct: 125 DE----------------ATNTWTVDTNHGDRI-------RARYLIMASGQLS-VPQLPN 160
Query: 199 FPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTL 258
FP G + F G + H+ N +G+RV VIG S + V+ ++A + + +
Sbjct: 161 FP---GLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELF---V 214
Query: 259 LFKTVHWMVP 268
+T H+ VP
Sbjct: 215 FQRTPHFAVP 224
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 48/243 (19%)
Query: 35 IIGAGVSGLLAC-KYTLENGFKPIVFEARSGIGGVWSQTIESTKL-QTPKSFYQFS---D 89
+IGAG G+ A K E G + F+ G GG W L T Y+FS D
Sbjct: 46 VIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRD 105
Query: 90 FAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWG 149
++ T+ +++EYL+ F+L KF T+VTS L +DE+ W++
Sbjct: 106 LLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYL----DDENLWEV-- 159
Query: 150 GTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFD 209
+ E Y+ +V+ +G S + N P+ P G + F+
Sbjct: 160 ---------------------TTDHGEVYRAKYVVNAVGLLSAI-NFPNLP---GLDTFE 194
Query: 210 GKVLHSMNDDLAAELINGKRVTVIGF----QKSAVDVAAEVANRNGVRYPCTLLFKTVHW 265
G+ +H+ L G+RV VIG Q+ +A EV + T+ +T +
Sbjct: 195 GETIHTAAWPEGKSLA-GRRVGVIGTGSTGQQVITSLAPEVEH-------LTVFVRTPQY 246
Query: 266 MVP 268
VP
Sbjct: 247 SVP 249
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 48/243 (19%)
Query: 35 IIGAGVSGLLAC-KYTLENGFKPIVFEARSGIGGVWSQTIESTKL-QTPKSFYQFS---D 89
+IGAG G+ A K E G + F+ G GG W L T Y+FS D
Sbjct: 13 VIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRD 72
Query: 90 FAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWG 149
++ T+ +++EYL+ F+L KF T+VTS L +DE+ W++
Sbjct: 73 LLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYL----DDENLWEV-- 126
Query: 150 GTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFD 209
+ E Y+ +V+ +G S + N P+ P G + F+
Sbjct: 127 ---------------------TTDHGEVYRAKYVVNAVGLLSAI-NFPNLP---GLDTFE 161
Query: 210 GKVLHSMNDDLAAELINGKRVTVIGF----QKSAVDVAAEVANRNGVRYPCTLLFKTVHW 265
G+ +H+ L G+RV VIG Q+ +A EV + T+ +T +
Sbjct: 162 GETIHTAAWPEGKSLA-GRRVGVIGTGSTGQQVITSLAPEVEH-------LTVFVRTPQY 213
Query: 266 MVP 268
VP
Sbjct: 214 SVP 216
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 29 MERKIAIIGAGVSG---LLACKYTLENGFKP---IVFEARSGIGGVWSQT---------- 72
M +IAI+GAG SG L A + E G + + FE ++ GG W+ T
Sbjct: 1 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGE 60
Query: 73 -IESTKLQT-----PKSFYQFSDFAWPNSVTE---TFPDHNKVMEYLQAYAAHFNLFPSI 123
+ S+ + PK +F+D+ + + ++P + +Y++ + I
Sbjct: 61 PVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYI 120
Query: 124 KFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFV 183
+F+T V R V +ED S + VTVQ+ + +E + D+V
Sbjct: 121 RFNTAV----RHVEFNED----------------SQTFTVTVQDHTTDTIYSEEF--DYV 158
Query: 184 ILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVA 243
+ C G +S TP P +G E F G++LH+ + A E + K V ++G SA D+
Sbjct: 159 VCCTGHFS----TPYVPEFEGFEKFGGRILHAHDFRDALEFKD-KTVLLVGSSSSAEDIG 213
Query: 244 AE 245
++
Sbjct: 214 SQ 215
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 29 MERKIAIIGAGVSG---LLACKYTLENGFKP---IVFEARSGIGGVWSQT---------- 72
M +IAI+GAG SG L A + E G + + FE ++ GG W+ T
Sbjct: 1 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGE 60
Query: 73 -IESTKLQT-----PKSFYQFSDFAWPNSVTE---TFPDHNKVMEYLQAYAAHFNLFPSI 123
+ S+ + PK +F+D+ + + ++P + +Y++ + I
Sbjct: 61 PVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYI 120
Query: 124 KFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFV 183
+F+T V R V +ED S + VTVQ+ + +E + D+V
Sbjct: 121 RFNTAV----RHVEFNED----------------SQTFTVTVQDHTTDTIYSEEF--DYV 158
Query: 184 ILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVA 243
+ C G +S TP P +G E F G++LH+ + A E + K V ++G SA D+
Sbjct: 159 VCCTGHFS----TPYVPEFEGFEKFGGRILHAHDFRDALEFKD-KTVLLVGSSYSAEDIG 213
Query: 244 AE 245
++
Sbjct: 214 SQ 215
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 29 MERKIAIIGAGVSG---LLACKYTLENGFKP---IVFEARSGIGGVWSQT---------- 72
M +IAI+GAG SG L A + E G + + FE ++ GG W+ T
Sbjct: 6 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGE 65
Query: 73 -IESTKLQT-----PKSFYQFSDFAWPNSVTE---TFPDHNKVMEYLQAYAAHFNLFPSI 123
+ S+ + PK +F+D+ + + ++P + +Y++ + I
Sbjct: 66 PVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYI 125
Query: 124 KFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFV 183
+F+T V R V +ED S + VTVQ+ + + A+ D+V
Sbjct: 126 RFNTAV----RHVEFNED----------------SQTFTVTVQDHTTDTIYSAAF--DYV 163
Query: 184 ILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVA 243
+ C G +S TP P +G E F G++LH+ + A E + K V ++G SA D+
Sbjct: 164 VCCTGHFS----TPYVPEFEGFEKFGGRILHAHDFRDALEFKD-KTVLLVGSSYSAEDIG 218
Query: 244 AE 245
++
Sbjct: 219 SQ 220
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 29 MERKIAIIGAGVSG---LLACKYTLENGFKP---IVFEARSGIGGVWSQT---------- 72
M +IAI+GAG SG L A + E G + + FE ++ GG W+ T
Sbjct: 6 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGE 65
Query: 73 -IESTKLQT-----PKSFYQFSDFAWPNSVTE---TFPDHNKVMEYLQAYAAHFNLFPSI 123
+ S+ + PK +F+D+ + + ++P + +Y++ + I
Sbjct: 66 PVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYI 125
Query: 124 KFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFV 183
+F+T V R V +ED S + VTVQ+ + + A+ D+V
Sbjct: 126 RFNTAV----RHVEFNED----------------SQTFTVTVQDHTTDTIYSAAF--DYV 163
Query: 184 ILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVA 243
+ C G +S TP P +G E F G++LH+ + A E + K V ++G SA D+
Sbjct: 164 VCCTGHFS----TPYVPEFEGFEKFGGRILHAHDFRDALEFKD-KTVLLVGSSYSAEDIG 218
Query: 244 AE 245
++
Sbjct: 219 SQ 220
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 29 MERKIAIIGAGVSG---LLACKYTLENGFKP---IVFEARSGIGGVWSQT---------- 72
M +IAI+GAG SG L A + E G + + FE ++ GG W+ T
Sbjct: 6 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGE 65
Query: 73 -IESTKLQT-----PKSFYQFSDFAWPNSVTE---TFPDHNKVMEYLQAYAAHFNLFPSI 123
+ S+ + PK +F+D+ + + ++P + +Y++ + I
Sbjct: 66 PVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYI 125
Query: 124 KFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFV 183
+F+T V R V +ED S + VTVQ+ + + A+ D+V
Sbjct: 126 RFNTAV----RHVEFNED----------------SQTFTVTVQDHTTDTIYSAAF--DYV 163
Query: 184 ILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVA 243
+ C G +S TP P +G E F G++LH+ + A E + K V ++G SA D+
Sbjct: 164 VCCTGHFS----TPYVPEFEGFEKFGGRILHAHDFRDALEFKD-KTVLLVGSSYSAEDIG 218
Query: 244 AE 245
++
Sbjct: 219 SQ 220
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 29 MERKIAIIGAGVSG---LLACKYTLENGFKP---IVFEARSGIGGVWSQT---------- 72
M +IAI+GAG SG L A + E G + + FE ++ GG W+ T
Sbjct: 6 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGE 65
Query: 73 -IESTKLQT-----PKSFYQFSDFAWPNSVTE---TFPDHNKVMEYLQAYAAHFNLFPSI 123
+ S+ + PK +F+D+ + + ++P + +Y++ + I
Sbjct: 66 PVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYI 125
Query: 124 KFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFV 183
+F+T V R V +ED S + VTVQ+ + + A+ D+V
Sbjct: 126 RFNTAV----RHVEFNED----------------SQTFTVTVQDHTTDTIYSAAF--DYV 163
Query: 184 ILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVA 243
+ C G +S TP P +G E F G++LH+ + A E + K V ++G SA D+
Sbjct: 164 VCCTGHFS----TPYVPEFEGFEKFGGRILHAHDFRDALEFKD-KTVLLVGSSYSAEDIG 218
Query: 244 AE 245
++
Sbjct: 219 SQ 220
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 99/249 (39%), Gaps = 65/249 (26%)
Query: 31 RKIAIIGAGVSGLLACKYTL-ENGFKPI-VFEARSGIGGVWSQT--------IEST---- 76
RKIAIIGAG SGL+ K L E F + +FE R GGVW+ T + ST
Sbjct: 7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66
Query: 77 ----------------------KLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYLQAYA 114
+ TP + D ++ T FP + + EY + YA
Sbjct: 67 TTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSF-KPQTLQFPHRHTIQEYQRIYA 125
Query: 115 AHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSA 174
L P IK T V I++ G W VT + + S
Sbjct: 126 Q--PLLPFIKLATDVLDIEK----------------------KDGSWVVTYKGTKAGSPI 161
Query: 175 TEAYQVDFVILCIGRYSDLPNTPDFP-MNKGPEVFDGKVLHSMNDDLAAELINGKRVTVI 233
++ D V +C G Y ++P P+ +++ + G VLHS + EL G+ V V+
Sbjct: 162 SKDI-FDAVSICNGHY-EVPYIPNIKGLDEYAKAVPGSVLHS-SLFREPELFVGESVLVV 218
Query: 234 GFQKSAVDV 242
G SA D+
Sbjct: 219 GGASSANDL 227
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 99/249 (39%), Gaps = 65/249 (26%)
Query: 31 RKIAIIGAGVSGLLACKYTL-ENGFKPI-VFEARSGIGGVWSQT--------IEST---- 76
RKIAIIGAG SGL+ K L E F + +FE R GGVW+ T + ST
Sbjct: 9 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 68
Query: 77 ----------------------KLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYLQAYA 114
+ TP + D ++ T FP + + EY + YA
Sbjct: 69 TTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSF-KPQTLQFPHRHTIQEYQRIYA 127
Query: 115 AHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSA 174
L P IK T V I++ G W VT + + S
Sbjct: 128 Q--PLLPFIKLATDVLDIEK----------------------KDGSWVVTYKGTKAGSPI 163
Query: 175 TEAYQVDFVILCIGRYSDLPNTPDFP-MNKGPEVFDGKVLHSMNDDLAAELINGKRVTVI 233
++ D V +C G Y ++P P+ +++ + G VLHS + EL G+ V V+
Sbjct: 164 SKDI-FDAVSICNGHY-EVPYIPNIKGLDEYAKAVPGSVLHS-SLFREPELFVGESVLVV 220
Query: 234 GFQKSAVDV 242
G SA D+
Sbjct: 221 GGASSANDL 229
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 52/239 (21%)
Query: 32 KIAIIGAGVSG---LLACKYTLENGFKP---IVFEARSGIGGVWSQT-----------IE 74
+IAI+GAG SG L A + E G + + FE ++ GG W+ T +
Sbjct: 4 RIAILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63
Query: 75 STKLQT-----PKSFYQFSDFAWPNSVTE---TFPDHNKVMEYLQAYAAHFNLFPSIKFD 126
S+ + PK +F+D+ + + ++P + +Y++ + I+F+
Sbjct: 64 SSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123
Query: 127 TKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILC 186
T V R V +ED S + VTVQ+ + +E + D+V+ C
Sbjct: 124 TAV----RHVEFNED----------------SQTFTVTVQDHTTDTIYSEEF--DYVVCC 161
Query: 187 IGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAE 245
G +S TP P +G E F G++LH+ + A E + K V ++G SA D+ ++
Sbjct: 162 TGHFS----TPYVPEFEGFEKFGGRILHAHDFRDALEFKD-KTVLLVGSSYSAEDIGSQ 215
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 80/219 (36%), Gaps = 43/219 (19%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAW 92
+ +IG G SGL A + +G ++ +A + GG W S L +P + W
Sbjct: 6 VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIP--GW 63
Query: 93 PNSVTE-TFPDHNKVMEYLQAYAAHFNL--FPSIKFDTKVTSIDRLVPSDEDEHSWDLWG 149
P ++ +P +V+ YL Y + L I+ +RL D W
Sbjct: 64 PMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQW---- 119
Query: 150 GTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFD 209
AR V SAT + + TP++ +G E F
Sbjct: 120 -----------------LARAVISATGTWGEAY-------------TPEY---QGLESFA 146
Query: 210 GKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVAN 248
G LHS + A G RV +IG S + AEV+
Sbjct: 147 GIQLHSAHYSTPAPF-AGMRVAIIGGGNSGAQILAEVST 184
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQTIESTKLQ 79
P ++R +AI+GAG+SGL A + G V EAR +GG W+ TI+ L+
Sbjct: 2 PTLQRDVAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLE 55
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQTIESTKLQ 79
P ++R +AI+GAG SGL A + G V EAR +GG W+ TI+ L+
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLE 55
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQTIESTKLQ 79
P ++R +AI+GAG SGL A + G V EAR +GG W+ TI+ L+
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLE 55
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQTIESTKLQ 79
P ++R +AI+GAG SGL A + G V EAR +GG W+ TI+ L+
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLE 55
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 92/249 (36%), Gaps = 54/249 (21%)
Query: 35 IIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWS-QTIESTKLQTPKSFYQFSDFAWP 93
+IGAGV+G+ + G K + EA +GG W +L T Y + FA
Sbjct: 14 VIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTES--YAYGYFALK 71
Query: 94 NSV-----TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLW 148
+ +E F +++ Y+ A ++ +F+T+VT+ R V +D
Sbjct: 72 GIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAA-RYVENDR-------- 122
Query: 149 GGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVF 208
W VT+ E F+I G S PD KG + F
Sbjct: 123 -----------LWEVTLDN-------EEVVTCRFLISATGPLS-ASRMPDI---KGIDSF 160
Query: 209 DGKVLHSMNDDLAAE------LINGKRVTVIGFQKSAVD---VAAEVANRNGVRYPCTLL 259
G+ HS AE GKRV VIG + V +AAE A +
Sbjct: 161 KGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKE------LYVF 214
Query: 260 FKTVHWMVP 268
+T +W P
Sbjct: 215 QRTPNWCTP 223
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQTIESTKLQ 79
++R + I+GAG SGL A + + G V EAR +GG W+ TI+ L+
Sbjct: 6 LDRDVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLE 57
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 30 ERKIAIIGAGVSGLLACKYTLENGFKP-IVFEARSGIGG 67
++K+ IIGAG++GL A +NG + +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 30 ERKIAIIGAGVSGLLACKYTLENGFKP-IVFEARSGIGG 67
++K+ IIGAG++GL A +NG + +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 30 ERKIAIIGAGVSGLLACKYTLENGFKP-IVFEARSGIGG 67
++K+ IIGAG++GL A +NG + +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 30 ERKIAIIGAGVSGLLACKYTLENGFKP-IVFEARSGIGG 67
++K+ IIGAG++GL A +NG + +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 30 ERKIAIIGAGVSGLLACKYTLENGFKP-IVFEARSGIGG 67
++K+ IIGAG++GL A +NG + +V EAR +GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
+ +IG G+SGL A K E G +V EAR +GG
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG 39
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
+ +IG G+SGL A K E G +V EAR +GG
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG 39
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
+ +IG G+SGL A K E G +V EAR +GG
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG 50
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQTIESTKLQTPKSFYQFSDFA 91
+ +IG G GL A + GFK ++ EAR IGG WS I+ + ++ +
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWH--- 98
Query: 92 WPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKV 129
+ V + Y H L PS F V
Sbjct: 99 -----------QSHVWREITRYKMHNALSPSFNFSRGV 125
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQTIESTKLQTPKSFYQFSDFA 91
+ +IG G GL A + GFK ++ EAR IGG WS I+ + ++ +
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWH--- 98
Query: 92 WPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKV 129
+ V + Y H L PS F V
Sbjct: 99 -----------QSHVWREITRYKMHNALSPSFNFSRGV 125
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQTIESTKLQTPKSFYQFSDFA 91
+ +IG G GL A + GFK ++ EAR IGG WS I+ + ++ +
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWH--- 98
Query: 92 WPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKV 129
+ V + Y H L PS F V
Sbjct: 99 -----------QSHVWREITRYKMHNALSPSFNFSRGV 125
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
+++A+IGAGVSGL A +G VFEA GG
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 50
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
K+ IIG+GVSGL A + G + EAR +GG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 193
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
K+ IIG+GVSGL A + G + EAR +GG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 193
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW-----SQTIESTKLQTPKSFY 85
+KI I+GAG SG + + E G + + + R IGG S+T + P F+
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH 63
Query: 86 QFSDFAWP--NSVTETFPDHNKVMEYL--QAYAAHFNLFPSIKFDTKVTSIDR 134
++ W N E P N+V + Q ++ NL +F +K S D
Sbjct: 64 TDNETVWNYINKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDE 116
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
K+ IIG+GVSGL A + G + EAR +GG
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 145
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With
Reduced Fad
Length = 384
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW-----SQTIESTKLQTPKSFY 85
+KI I+GAG SG + + E G + + + R IGG S+T + P F+
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH 63
Query: 86 QFSDFAWP--NSVTETFPDHNKVMEYL--QAYAAHFNLFPSIKFDTKVTSID 133
++ W N E P N+V + Q ++ NL +F +K S D
Sbjct: 64 TDNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPD 115
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW-----SQTIESTKLQTPKSFY 85
+KI I+GAG SG + + E G + + + R IGG S+T + P F+
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH 63
Query: 86 QFSDFAWP--NSVTETFPDHNKVMEYL--QAYAAHFNLFPSIKFDTKVTSID 133
++ W N E P N+V + Q ++ NL +F +K S D
Sbjct: 64 TDNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPD 115
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
K+ IIG+GVSGL A + G + EAR +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
K+ IIG+GVSGL A + G + EAR +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
K+ IIG+GVSGL A + G + EAR +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
K+ IIG+GVSGL A + G + EAR +GG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
K+ IIG+GVSGL A + G + EAR +GG
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
+ +IG G+SGL A K E +V EAR +GG
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGG 58
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQ 86
P ++I I+GAG++GL+A G + EA + G +T + K + P F
Sbjct: 41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGE-PSPFAD 99
Query: 87 FSDFAWPNSVTETFPD-HNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVP 137
+ +A ++ P H + + LF ++ D + + D VP
Sbjct: 100 PAQYAEAGAM--RLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVP 149
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 24 SSGPKMERKIAIIGAGVSGLLACKYTLEN-GFKPIVFEARSGIGGVWSQTIESTKLQTPK 82
+S PK ++ I+GAG+SGL A Y L N G + V EA GG K
Sbjct: 43 TSNPK---RVVIVGAGMSGLSAA-YVLANAGHQVTVLEASERAGG------------QVK 86
Query: 83 SFYQFSDFAWPNSVTETFPD-HNKVMEYLQAYAAHFNLF 120
++ + + N P+ H V EY++ + N F
Sbjct: 87 TYRNEKEGWYANLGPMRLPEKHRIVREYIRKFGLQLNEF 125
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQT--IESTKLQTPKSF 84
K + ++G G +GL + + G+K V EAR+ GG VW+ E T L
Sbjct: 9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQK 68
Query: 85 YQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKV 129
FS+ + N P + ++Y + F + +T V
Sbjct: 69 CTFSEGHFYNVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFV 113
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63
M+ ++AIIGAG SGLL + + G ++ E R+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERRT 35
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKP-IVFEARSGIGGVWSQT 72
++ ++GAG+SG+ A K E G ++ EA IGG +T
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT 47
>pdb|3VNK|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNM|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
Length = 293
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 153 KPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSD-LPNT 196
K G W +V+ R V+ EA VDF + + R+ + L NT
Sbjct: 118 KTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINT 162
>pdb|3VNI|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNJ|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNL|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
Length = 294
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 153 KPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSD-LPNT 196
K G W +V+ R V+ EA VDF + + R+ + L NT
Sbjct: 119 KTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINT 163
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 32 KIAIIGAGVSGLLACKYTLENGFKP-IVFEARSGIGGVWSQT 72
++ ++GAG+SG+ A K E G ++ EA IGG +T
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT 47
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 206 EVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVD 241
E ++GK LH DDL + G+RV ++G SAVD
Sbjct: 135 EQYEGKNLHYFVDDL--QKFAGRRVAILGGGDSAVD 168
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKL--QTPKSF 84
+A++G G+SGL + G ++ E+ + +GG + L Q P SF
Sbjct: 19 VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF 72
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 24 SSGPKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKS 83
+S PK + ++GAG+SGL A G K V EA GG +++T ++
Sbjct: 30 TSNPK---HVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGG---------RVRTHRN 77
Query: 84 FYQFSDFAW-----PNSVTETFPDHNKVMEYLQAYAAHFNLF 120
S W P + E H V EY++ + + N F
Sbjct: 78 ----SKEGWYANLGPMRIPEK---HRIVREYIRKFGLNLNEF 112
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin
Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin
Reductase
Length = 335
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT 72
R + +IG+G +G A Y P+VFE S G + + T
Sbjct: 15 RDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTT 56
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 155 FSSSGKWNVTVQEAR-NVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVL 213
F ++ N++ +A +++ TE Y D++ + G Y N P P G +
Sbjct: 106 FENTVVTNISADDAYYTIATTTETYHADYIFVATGDY----NFPKKPFKYG-------IH 154
Query: 214 HSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNG 251
+S +D + N + VIG +S D A ++A +NG
Sbjct: 155 YSEIEDF--DNFNKGQYVVIGGNESGFDAAYQLA-KNG 189
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 27 PKMERK-IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67
P +++K +A++GAG +GL G + +F+A S IGG
Sbjct: 369 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,116,420
Number of Sequences: 62578
Number of extensions: 679561
Number of successful extensions: 1525
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 90
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)