Query 009897
Match_columns 523
No_of_seqs 325 out of 3433
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 18:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 3.1E-71 6.7E-76 581.2 22.4 434 31-522 2-453 (531)
2 PLN02172 flavin-containing mon 100.0 1.6E-58 3.4E-63 479.5 36.9 369 27-517 7-405 (461)
3 KOG1399 Flavin-containing mono 100.0 1.3E-49 2.9E-54 404.6 26.7 366 28-515 4-386 (448)
4 COG2072 TrkA Predicted flavopr 100.0 3.9E-40 8.4E-45 340.8 32.1 393 29-465 7-416 (443)
5 PF13738 Pyr_redox_3: Pyridine 100.0 2.3E-31 4.9E-36 249.1 14.1 192 34-266 1-203 (203)
6 TIGR01292 TRX_reduct thioredox 100.0 9.3E-29 2E-33 245.7 27.7 284 31-460 1-297 (300)
7 PRK10262 thioredoxin reductase 100.0 2.1E-27 4.5E-32 238.2 27.5 295 29-461 5-316 (321)
8 PRK15317 alkyl hydroperoxide r 100.0 2.9E-26 6.2E-31 243.8 27.0 282 30-457 211-505 (517)
9 PRK05249 soluble pyridine nucl 99.9 3.5E-26 7.6E-31 240.8 25.1 307 29-463 4-336 (461)
10 COG1249 Lpd Pyruvate/2-oxoglut 99.9 1.7E-26 3.7E-31 236.6 20.3 315 28-461 2-334 (454)
11 PRK04965 NADH:flavorubredoxin 99.9 3.4E-26 7.3E-31 234.5 22.4 286 29-463 1-303 (377)
12 PLN02507 glutathione reductase 99.9 5.2E-26 1.1E-30 240.0 24.1 306 28-462 23-363 (499)
13 COG0492 TrxB Thioredoxin reduc 99.9 1.6E-25 3.4E-30 219.0 24.8 267 29-442 2-277 (305)
14 TIGR01421 gluta_reduc_1 glutat 99.9 6.2E-26 1.3E-30 237.2 22.7 300 30-462 2-328 (450)
15 PRK06116 glutathione reductase 99.9 9.1E-26 2E-30 236.7 23.8 297 30-462 4-328 (450)
16 TIGR03140 AhpF alkyl hydropero 99.9 1.3E-25 2.8E-30 238.5 25.2 285 30-460 212-509 (515)
17 PRK06416 dihydrolipoamide dehy 99.9 7.1E-26 1.5E-30 238.4 22.6 306 29-463 3-335 (462)
18 PRK13512 coenzyme A disulfide 99.9 5.2E-26 1.1E-30 237.2 20.9 289 31-462 2-312 (438)
19 TIGR01424 gluta_reduc_2 glutat 99.9 3.3E-26 7.2E-31 239.4 19.3 299 30-462 2-326 (446)
20 COG1252 Ndh NADH dehydrogenase 99.9 3.4E-26 7.4E-31 228.6 17.9 293 28-463 1-331 (405)
21 PRK14694 putative mercuric red 99.9 2.5E-25 5.5E-30 234.2 24.8 307 30-463 6-336 (468)
22 PRK08010 pyridine nucleotide-d 99.9 3.1E-25 6.7E-30 232.1 21.9 300 29-462 2-317 (441)
23 PRK06370 mercuric reductase; V 99.9 4.1E-25 9E-30 232.5 22.3 301 30-462 5-334 (463)
24 TIGR03143 AhpF_homolog putativ 99.9 1E-24 2.2E-29 233.3 25.4 173 31-264 5-177 (555)
25 TIGR02053 MerA mercuric reduct 99.9 2.1E-25 4.5E-30 234.8 19.5 301 31-462 1-329 (463)
26 PTZ00058 glutathione reductase 99.9 6E-25 1.3E-29 232.9 21.8 316 28-462 46-432 (561)
27 PRK09564 coenzyme A disulfide 99.9 9.7E-25 2.1E-29 228.9 23.2 294 31-463 1-318 (444)
28 PRK06115 dihydrolipoamide dehy 99.9 2.8E-25 6E-30 233.4 18.8 305 29-463 2-339 (466)
29 PRK06292 dihydrolipoamide dehy 99.9 9.6E-25 2.1E-29 229.8 23.0 311 28-462 1-331 (460)
30 PRK09754 phenylpropionate diox 99.9 2.7E-25 5.9E-30 229.1 18.2 288 30-463 3-310 (396)
31 PRK07818 dihydrolipoamide dehy 99.9 1.9E-24 4.2E-29 227.5 24.7 312 30-463 4-337 (466)
32 PRK07251 pyridine nucleotide-d 99.9 2.5E-24 5.4E-29 225.1 25.3 296 29-462 2-316 (438)
33 PRK06467 dihydrolipoamide dehy 99.9 1.8E-24 3.9E-29 227.4 24.0 306 30-462 4-337 (471)
34 PRK14727 putative mercuric red 99.9 1.4E-24 3E-29 228.9 22.0 313 29-462 15-346 (479)
35 PRK14989 nitrite reductase sub 99.9 1.3E-24 2.8E-29 240.3 21.7 289 29-463 2-311 (847)
36 TIGR01423 trypano_reduc trypan 99.9 3.2E-24 7E-29 225.0 23.2 321 30-462 3-351 (486)
37 PRK13748 putative mercuric red 99.9 3.7E-24 8E-29 230.9 24.1 309 30-462 98-428 (561)
38 PTZ00052 thioredoxin reductase 99.9 8.3E-25 1.8E-29 231.1 18.5 312 30-462 5-341 (499)
39 TIGR02374 nitri_red_nirB nitri 99.9 1.4E-24 3E-29 240.4 21.0 285 33-463 1-302 (785)
40 PTZ00318 NADH dehydrogenase-li 99.9 1.7E-24 3.7E-29 224.9 20.1 296 30-462 10-346 (424)
41 PRK07846 mycothione reductase; 99.9 3.4E-24 7.4E-29 223.9 22.2 304 31-462 2-325 (451)
42 PRK05976 dihydrolipoamide dehy 99.9 4.3E-24 9.3E-29 225.2 23.0 314 30-463 4-344 (472)
43 PLN02546 glutathione reductase 99.9 6.5E-25 1.4E-29 232.8 16.6 299 30-462 79-413 (558)
44 PF13434 K_oxygenase: L-lysine 99.9 3.2E-25 6.9E-30 221.7 13.4 228 31-290 3-252 (341)
45 PRK09853 putative selenate red 99.9 4.5E-24 9.7E-29 234.4 23.4 295 28-464 537-842 (1019)
46 TIGR01350 lipoamide_DH dihydro 99.9 9.5E-24 2.1E-28 222.4 24.1 304 31-463 2-333 (461)
47 TIGR01438 TGR thioredoxin and 99.9 2.1E-23 4.5E-28 219.5 23.9 316 30-462 2-344 (484)
48 PRK07845 flavoprotein disulfid 99.9 2.9E-23 6.2E-28 218.2 24.6 309 31-462 2-337 (466)
49 TIGR01316 gltA glutamate synth 99.9 1.4E-23 2.9E-28 219.3 22.0 164 27-264 130-306 (449)
50 PRK06327 dihydrolipoamide dehy 99.9 4.8E-23 1E-27 217.2 24.4 309 30-463 4-348 (475)
51 PRK12831 putative oxidoreducta 99.9 3.2E-23 7E-28 216.9 21.5 167 27-264 137-315 (464)
52 PTZ00153 lipoamide dehydrogena 99.9 2E-23 4.2E-28 224.1 19.9 317 30-462 116-495 (659)
53 PRK06912 acoL dihydrolipoamide 99.9 5.4E-23 1.2E-27 215.9 22.6 307 32-462 2-330 (458)
54 PRK11749 dihydropyrimidine deh 99.9 4.2E-23 9.1E-28 216.7 21.5 164 28-264 138-308 (457)
55 TIGR03169 Nterm_to_SelD pyridi 99.9 2.1E-23 4.5E-28 213.1 18.0 285 32-462 1-309 (364)
56 TIGR03452 mycothione_red mycot 99.9 8.7E-23 1.9E-27 213.6 21.2 304 30-462 2-328 (452)
57 KOG0405 Pyridine nucleotide-di 99.9 2.1E-22 4.5E-27 190.3 20.0 313 30-461 20-349 (478)
58 PRK12779 putative bifunctional 99.9 2.1E-22 4.5E-27 224.8 22.5 164 28-264 304-481 (944)
59 TIGR03315 Se_ygfK putative sel 99.9 6.7E-22 1.5E-26 218.5 23.2 296 29-464 536-840 (1012)
60 PRK12778 putative bifunctional 99.9 7.6E-22 1.6E-26 218.7 21.9 165 28-264 429-605 (752)
61 PRK12814 putative NADPH-depend 99.9 9.6E-22 2.1E-26 213.8 21.1 164 28-264 191-358 (652)
62 PRK12770 putative glutamate sy 99.9 4.1E-21 8.9E-26 194.9 23.5 178 29-264 17-207 (352)
63 COG3486 IucD Lysine/ornithine 99.9 8.8E-21 1.9E-25 184.4 23.7 220 31-290 6-251 (436)
64 TIGR01318 gltD_gamma_fam gluta 99.9 1.5E-20 3.3E-25 197.1 22.4 168 28-268 139-321 (467)
65 PRK12775 putative trifunctiona 99.9 1.5E-20 3.3E-25 211.8 21.9 165 29-264 429-606 (1006)
66 PRK12810 gltD glutamate syntha 99.9 2.7E-20 5.9E-25 195.8 22.0 160 29-261 142-313 (471)
67 PRK12769 putative oxidoreducta 99.9 2.3E-20 5.1E-25 203.8 21.3 164 28-264 325-503 (654)
68 KOG0404 Thioredoxin reductase 99.9 4.2E-20 9E-25 164.6 18.6 182 31-264 9-191 (322)
69 TIGR01372 soxA sarcosine oxida 99.8 7.6E-20 1.7E-24 207.3 24.0 284 30-459 163-467 (985)
70 TIGR03385 CoA_CoA_reduc CoA-di 99.8 1.1E-19 2.4E-24 189.6 21.1 278 44-462 1-304 (427)
71 KOG1335 Dihydrolipoamide dehyd 99.8 8.8E-20 1.9E-24 174.7 16.9 321 29-463 38-378 (506)
72 PRK12809 putative oxidoreducta 99.8 2.2E-19 4.7E-24 195.3 21.0 164 28-264 308-486 (639)
73 KOG2495 NADH-dehydrogenase (ub 99.8 1.1E-18 2.4E-23 170.1 21.3 299 30-463 55-396 (491)
74 KOG1336 Monodehydroascorbate/f 99.8 2.4E-19 5.2E-24 178.0 16.7 265 30-442 74-352 (478)
75 COG4529 Uncharacterized protei 99.8 5.6E-18 1.2E-22 169.6 25.9 376 31-460 2-459 (474)
76 PRK13984 putative oxidoreducta 99.8 7.3E-19 1.6E-23 190.9 20.5 162 28-260 281-454 (604)
77 PRK12771 putative glutamate sy 99.8 1.2E-18 2.6E-23 187.5 20.8 163 28-264 135-302 (564)
78 COG1251 NirB NAD(P)H-nitrite r 99.8 4.8E-18 1E-22 176.2 21.7 289 29-463 2-307 (793)
79 TIGR01317 GOGAT_sm_gam glutama 99.8 4.7E-18 1E-22 179.0 21.9 163 29-264 142-318 (485)
80 PLN02852 ferredoxin-NADP+ redu 99.8 5.6E-18 1.2E-22 176.0 20.2 167 28-264 24-221 (491)
81 COG3634 AhpF Alkyl hydroperoxi 99.8 3.3E-18 7.2E-23 161.9 16.8 177 30-263 211-387 (520)
82 PRK09897 hypothetical protein; 99.7 1.5E-16 3.2E-21 167.3 22.8 194 31-264 2-246 (534)
83 KOG4716 Thioredoxin reductase 99.7 6.1E-16 1.3E-20 146.2 20.8 200 28-263 17-231 (503)
84 PTZ00188 adrenodoxin reductase 99.6 4.8E-14 1E-18 144.3 21.1 43 29-71 38-81 (506)
85 PRK06567 putative bifunctional 99.6 2.9E-14 6.2E-19 155.5 19.0 41 28-68 381-421 (1028)
86 KOG1800 Ferredoxin/adrenodoxin 99.6 8.4E-14 1.8E-18 134.1 19.1 175 18-264 9-215 (468)
87 KOG0399 Glutamate synthase [Am 99.6 1E-13 2.3E-18 147.6 20.6 154 29-251 1784-1948(2142)
88 COG0493 GltD NADPH-dependent g 99.6 2.8E-14 6E-19 147.0 14.0 159 29-261 122-294 (457)
89 COG0446 HcaD Uncharacterized N 99.5 5.5E-13 1.2E-17 138.5 18.6 283 33-462 1-310 (415)
90 COG1148 HdrA Heterodisulfide r 99.4 2.5E-11 5.4E-16 120.6 21.4 44 28-71 122-165 (622)
91 PF13454 NAD_binding_9: FAD-NA 99.4 3.8E-12 8.2E-17 113.4 13.3 127 34-189 1-155 (156)
92 COG2081 Predicted flavoprotein 99.3 4.2E-12 9.1E-17 124.7 10.4 137 28-196 1-171 (408)
93 KOG2755 Oxidoreductase [Genera 99.2 3.2E-10 6.9E-15 104.4 14.7 167 32-274 1-175 (334)
94 KOG1346 Programmed cell death 99.2 1.9E-10 4E-15 112.1 13.3 249 31-403 179-455 (659)
95 PF03486 HI0933_like: HI0933-l 99.2 8.1E-11 1.8E-15 120.5 11.1 134 31-195 1-169 (409)
96 TIGR00292 thiazole biosynthesi 99.1 3E-10 6.6E-15 109.1 11.9 141 29-191 20-170 (254)
97 PRK04176 ribulose-1,5-biphosph 99.1 2.8E-10 6.1E-15 109.7 11.3 140 29-191 24-173 (257)
98 TIGR02032 GG-red-SF geranylger 99.1 4.4E-10 9.5E-15 111.1 12.4 130 31-191 1-148 (295)
99 PF07992 Pyr_redox_2: Pyridine 99.1 2.3E-11 4.9E-16 113.3 2.4 153 32-234 1-159 (201)
100 PRK08773 2-octaprenyl-3-methyl 99.1 7.8E-10 1.7E-14 114.2 13.6 133 28-191 4-169 (392)
101 PRK06847 hypothetical protein; 99.1 1.2E-09 2.6E-14 112.1 14.8 131 30-191 4-163 (375)
102 PRK06834 hypothetical protein; 99.1 1.3E-09 2.8E-14 115.2 14.2 132 28-191 1-156 (488)
103 PRK08013 oxidoreductase; Provi 99.1 1.2E-09 2.5E-14 113.2 13.2 132 29-191 2-168 (400)
104 TIGR01790 carotene-cycl lycope 99.1 1.6E-09 3.4E-14 111.8 14.0 129 32-191 1-141 (388)
105 PRK09126 hypothetical protein; 99.1 1.5E-09 3.3E-14 112.1 13.5 133 28-191 1-167 (392)
106 PRK07494 2-octaprenyl-6-methox 99.1 1.5E-09 3.2E-14 112.0 13.2 131 30-191 7-167 (388)
107 PLN02463 lycopene beta cyclase 99.1 1E-09 2.2E-14 114.1 11.9 130 30-191 28-169 (447)
108 PRK10157 putative oxidoreducta 99.1 2.3E-09 4.9E-14 111.7 14.6 131 30-191 5-164 (428)
109 COG0644 FixC Dehydrogenases (f 99.1 1E-09 2.2E-14 113.3 11.9 134 28-191 1-152 (396)
110 COG3380 Predicted NAD/FAD-depe 99.0 8.4E-10 1.8E-14 102.4 9.6 122 32-188 3-157 (331)
111 PRK07364 2-octaprenyl-6-methox 99.0 1.7E-09 3.7E-14 112.6 12.9 135 29-191 17-181 (415)
112 PRK08244 hypothetical protein; 99.0 2.6E-09 5.7E-14 113.7 14.2 135 29-191 1-159 (493)
113 TIGR02023 BchP-ChlP geranylger 99.0 3.4E-09 7.4E-14 109.3 14.2 135 31-191 1-155 (388)
114 PRK05714 2-octaprenyl-3-methyl 99.0 2.2E-09 4.7E-14 111.4 12.7 132 29-191 1-168 (405)
115 PF01494 FAD_binding_3: FAD bi 99.0 1.1E-09 2.4E-14 111.0 9.6 135 31-191 2-172 (356)
116 PRK06753 hypothetical protein; 99.0 2.9E-09 6.3E-14 109.2 12.7 128 31-191 1-152 (373)
117 PRK08163 salicylate hydroxylas 99.0 2.6E-09 5.6E-14 110.5 11.5 132 29-191 3-166 (396)
118 PRK06184 hypothetical protein; 99.0 5.4E-09 1.2E-13 111.5 14.2 134 30-191 3-168 (502)
119 PRK06183 mhpA 3-(3-hydroxyphen 99.0 7.7E-09 1.7E-13 111.2 15.3 136 28-191 8-174 (538)
120 PRK10015 oxidoreductase; Provi 99.0 8.1E-09 1.8E-13 107.5 14.5 131 30-191 5-164 (429)
121 PRK07608 ubiquinone biosynthes 99.0 5.9E-09 1.3E-13 107.5 13.4 131 29-191 4-167 (388)
122 PRK07236 hypothetical protein; 99.0 4.3E-09 9.4E-14 108.4 12.2 131 28-191 4-154 (386)
123 TIGR01988 Ubi-OHases Ubiquinon 99.0 4.7E-09 1E-13 108.0 12.3 129 32-191 1-163 (385)
124 PRK07333 2-octaprenyl-6-methox 99.0 5.7E-09 1.2E-13 108.2 12.8 130 31-191 2-167 (403)
125 PRK07190 hypothetical protein; 99.0 8.4E-09 1.8E-13 109.0 14.0 131 30-191 5-165 (487)
126 PRK08020 ubiF 2-octaprenyl-3-m 98.9 6.4E-09 1.4E-13 107.4 12.5 131 30-191 5-169 (391)
127 PRK08850 2-octaprenyl-6-methox 98.9 7.4E-09 1.6E-13 107.4 12.9 131 30-191 4-168 (405)
128 PRK08849 2-octaprenyl-3-methyl 98.9 8.4E-09 1.8E-13 106.2 12.8 131 30-191 3-167 (384)
129 PRK05732 2-octaprenyl-6-methox 98.9 7.9E-09 1.7E-13 106.8 12.6 133 28-191 1-169 (395)
130 PRK07588 hypothetical protein; 98.9 5.9E-09 1.3E-13 107.6 11.7 129 31-191 1-158 (391)
131 TIGR02028 ChlP geranylgeranyl 98.9 1.8E-08 3.9E-13 104.0 14.9 138 31-191 1-160 (398)
132 PRK08132 FAD-dependent oxidore 98.9 2.7E-08 5.7E-13 107.3 16.7 135 29-191 22-185 (547)
133 PRK06126 hypothetical protein; 98.9 2.3E-08 5E-13 107.8 16.2 138 28-191 5-188 (545)
134 PF05834 Lycopene_cycl: Lycope 98.9 1.2E-08 2.6E-13 104.4 13.4 147 32-216 1-161 (374)
135 COG0654 UbiH 2-polyprenyl-6-me 98.9 1.2E-08 2.6E-13 105.1 13.0 131 30-191 2-162 (387)
136 PLN02697 lycopene epsilon cycl 98.9 1.4E-08 3E-13 107.3 13.4 129 31-191 109-248 (529)
137 COG1635 THI4 Ribulose 1,5-bisp 98.9 5.6E-09 1.2E-13 94.2 8.7 144 29-190 29-177 (262)
138 PRK08243 4-hydroxybenzoate 3-m 98.9 1.9E-08 4E-13 103.9 13.9 135 29-191 1-163 (392)
139 TIGR01984 UbiH 2-polyprenyl-6- 98.9 9E-09 2E-13 105.9 11.5 129 32-191 1-162 (382)
140 PLN00093 geranylgeranyl diphos 98.9 2.7E-08 5.9E-13 103.9 15.1 140 29-191 38-199 (450)
141 PRK06185 hypothetical protein; 98.9 1.4E-08 3.1E-13 105.4 12.7 135 29-191 5-169 (407)
142 PRK07045 putative monooxygenas 98.8 4.1E-08 8.8E-13 101.3 14.2 132 30-191 5-165 (388)
143 PRK06617 2-octaprenyl-6-methox 98.8 2.5E-08 5.5E-13 102.2 12.2 129 31-191 2-160 (374)
144 PF00070 Pyr_redox: Pyridine n 98.8 5.3E-08 1.1E-12 76.2 11.0 70 32-136 1-70 (80)
145 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 4E-08 8.8E-13 101.3 13.4 135 29-191 1-163 (390)
146 PRK11445 putative oxidoreducta 98.8 4.7E-08 1E-12 99.3 13.2 131 31-191 2-157 (351)
147 TIGR00275 flavoprotein, HI0933 98.8 3.7E-08 8.1E-13 101.7 12.7 125 34-191 1-160 (400)
148 TIGR03219 salicylate_mono sali 98.8 2.4E-08 5.3E-13 103.9 11.4 128 31-191 1-159 (414)
149 TIGR01989 COQ6 Ubiquinone bios 98.8 3.8E-08 8.2E-13 103.1 12.7 135 31-191 1-183 (437)
150 PF01946 Thi4: Thi4 family; PD 98.8 1.2E-08 2.5E-13 92.8 7.3 106 29-136 16-126 (230)
151 PF01266 DAO: FAD dependent ox 98.8 3.8E-08 8.2E-13 99.8 11.9 58 102-191 145-203 (358)
152 PRK06475 salicylate hydroxylas 98.8 4.6E-08 1E-12 101.3 12.6 135 29-191 1-167 (400)
153 PLN02661 Putative thiazole syn 98.8 3.8E-08 8.2E-13 97.4 10.5 140 29-190 91-243 (357)
154 PRK07538 hypothetical protein; 98.8 1.1E-07 2.3E-12 99.0 14.5 136 31-191 1-165 (413)
155 PRK05868 hypothetical protein; 98.8 6.5E-08 1.4E-12 99.0 12.6 35 31-65 2-36 (372)
156 PF13450 NAD_binding_8: NAD(P) 98.8 1.3E-08 2.8E-13 76.6 5.4 47 35-81 1-48 (68)
157 PRK06996 hypothetical protein; 98.8 7.4E-08 1.6E-12 99.7 12.6 129 28-189 9-172 (398)
158 PRK11259 solA N-methyltryptoph 98.7 1.3E-07 2.9E-12 97.0 14.1 37 28-64 1-37 (376)
159 PRK05192 tRNA uridine 5-carbox 98.7 5.2E-08 1.1E-12 103.2 11.1 131 29-190 3-156 (618)
160 TIGR01789 lycopene_cycl lycope 98.7 8.4E-08 1.8E-12 97.9 11.9 141 32-216 1-157 (370)
161 PF12831 FAD_oxidored: FAD dep 98.7 1E-08 2.2E-13 106.8 5.2 132 32-190 1-149 (428)
162 PRK11728 hydroxyglutarate oxid 98.7 1.7E-07 3.7E-12 96.9 13.5 38 29-66 1-40 (393)
163 TIGR01813 flavo_cyto_c flavocy 98.7 4.2E-07 9.1E-12 95.3 16.5 133 32-191 1-192 (439)
164 TIGR01377 soxA_mon sarcosine o 98.7 2.8E-07 6.1E-12 94.7 13.9 34 31-64 1-34 (380)
165 PRK06481 fumarate reductase fl 98.7 5E-07 1.1E-11 96.3 15.9 40 29-68 60-99 (506)
166 COG1249 Lpd Pyruvate/2-oxoglut 98.6 4.5E-07 9.8E-12 93.9 14.3 107 28-199 171-277 (454)
167 PRK08274 tricarballylate dehyd 98.6 4.3E-07 9.4E-12 96.0 14.3 39 29-67 3-43 (466)
168 PF00890 FAD_binding_2: FAD bi 98.6 4.4E-07 9.5E-12 94.6 13.1 134 32-191 1-203 (417)
169 PRK12266 glpD glycerol-3-phosp 98.6 8.5E-07 1.8E-11 94.5 15.1 38 30-67 6-43 (508)
170 COG0579 Predicted dehydrogenas 98.6 6.2E-07 1.4E-11 91.3 12.8 40 28-67 1-42 (429)
171 PRK04965 NADH:flavorubredoxin 98.6 6.3E-07 1.4E-11 92.0 12.8 97 31-190 142-238 (377)
172 PRK01747 mnmC bifunctional tRN 98.6 6.4E-07 1.4E-11 98.7 13.5 35 31-65 261-295 (662)
173 TIGR01350 lipoamide_DH dihydro 98.5 1.8E-06 3.9E-11 91.2 16.1 103 30-197 170-272 (461)
174 PRK08294 phenol 2-monooxygenas 98.5 1.2E-06 2.5E-11 95.7 14.8 143 30-191 32-210 (634)
175 PRK05976 dihydrolipoamide dehy 98.5 2.6E-06 5.7E-11 90.2 16.9 106 30-198 180-285 (472)
176 PRK05329 anaerobic glycerol-3- 98.5 1.4E-06 3.1E-11 89.7 14.3 35 29-63 1-35 (422)
177 KOG2820 FAD-dependent oxidored 98.5 1.1E-06 2.5E-11 84.3 12.1 140 29-197 6-217 (399)
178 PRK07251 pyridine nucleotide-d 98.5 1.6E-06 3.4E-11 91.0 14.1 100 30-197 157-256 (438)
179 PRK06416 dihydrolipoamide dehy 98.5 1.6E-06 3.4E-11 91.6 14.2 104 30-197 172-275 (462)
180 PLN02927 antheraxanthin epoxid 98.5 1.7E-06 3.6E-11 93.5 14.3 35 29-63 80-114 (668)
181 PF01134 GIDA: Glucose inhibit 98.5 2E-07 4.4E-12 93.8 6.8 126 32-190 1-151 (392)
182 PRK11101 glpA sn-glycerol-3-ph 98.5 1.7E-06 3.6E-11 93.0 14.3 36 29-64 5-40 (546)
183 PTZ00383 malate:quinone oxidor 98.5 1.7E-06 3.6E-11 91.2 13.9 35 30-64 45-81 (497)
184 PRK13369 glycerol-3-phosphate 98.5 1.4E-06 3.1E-11 92.8 13.4 38 30-67 6-43 (502)
185 PRK09754 phenylpropionate diox 98.5 1E-06 2.2E-11 91.1 12.1 97 30-190 144-240 (396)
186 KOG1335 Dihydrolipoamide dehyd 98.5 1.3E-06 2.8E-11 85.1 11.4 109 29-198 210-318 (506)
187 PRK07057 sdhA succinate dehydr 98.5 2.3E-06 5E-11 92.7 14.8 42 26-67 8-49 (591)
188 PRK07121 hypothetical protein; 98.5 8.1E-07 1.8E-11 94.5 11.1 40 29-68 19-58 (492)
189 PRK12409 D-amino acid dehydrog 98.5 2.6E-06 5.7E-11 88.5 14.6 35 31-65 2-36 (410)
190 PRK05945 sdhA succinate dehydr 98.5 1.6E-06 3.5E-11 93.8 13.3 40 28-67 1-42 (575)
191 PRK06116 glutathione reductase 98.5 2.3E-06 5E-11 90.0 14.0 102 30-197 167-268 (450)
192 PLN02985 squalene monooxygenas 98.4 2.8E-06 6.1E-11 90.4 14.4 35 29-63 42-76 (514)
193 PRK05249 soluble pyridine nucl 98.4 2.4E-06 5.3E-11 90.2 13.8 101 30-197 175-275 (461)
194 KOG2415 Electron transfer flav 98.4 1.2E-06 2.6E-11 86.2 10.1 103 31-136 77-213 (621)
195 TIGR00551 nadB L-aspartate oxi 98.4 3E-06 6.5E-11 90.0 14.0 37 30-67 2-38 (488)
196 TIGR01812 sdhA_frdA_Gneg succi 98.4 2.9E-06 6.3E-11 91.9 14.1 36 32-67 1-36 (566)
197 PRK06452 sdhA succinate dehydr 98.4 3E-06 6.5E-11 91.4 14.1 39 29-67 4-42 (566)
198 COG1252 Ndh NADH dehydrogenase 98.4 1.5E-06 3.3E-11 87.9 11.0 129 31-234 156-298 (405)
199 TIGR03364 HpnW_proposed FAD de 98.4 2.7E-06 5.9E-11 86.9 13.2 34 31-64 1-34 (365)
200 TIGR00136 gidA glucose-inhibit 98.4 1.6E-06 3.4E-11 92.0 11.5 130 31-190 1-153 (617)
201 TIGR02053 MerA mercuric reduct 98.4 3.8E-06 8.2E-11 88.8 14.5 104 30-197 166-269 (463)
202 PRK06263 sdhA succinate dehydr 98.4 2.1E-06 4.5E-11 92.4 12.7 38 29-67 6-44 (543)
203 TIGR01424 gluta_reduc_2 glutat 98.4 3.5E-06 7.5E-11 88.5 13.8 101 30-197 166-266 (446)
204 PRK07803 sdhA succinate dehydr 98.4 3.5E-06 7.6E-11 91.9 14.2 39 29-67 7-45 (626)
205 PRK08401 L-aspartate oxidase; 98.4 2.4E-06 5.3E-11 90.1 12.4 34 31-64 2-35 (466)
206 TIGR03329 Phn_aa_oxid putative 98.4 1.9E-06 4.2E-11 90.8 11.6 35 29-63 23-59 (460)
207 KOG0029 Amine oxidase [Seconda 98.4 3.5E-07 7.7E-12 95.9 5.6 45 27-71 12-56 (501)
208 TIGR01421 gluta_reduc_1 glutat 98.4 4.3E-06 9.2E-11 87.9 13.7 103 30-197 166-268 (450)
209 PRK08275 putative oxidoreducta 98.4 2.1E-06 4.5E-11 92.6 11.5 37 29-65 8-46 (554)
210 PRK07573 sdhA succinate dehydr 98.4 4.4E-06 9.6E-11 91.2 14.0 38 29-66 34-71 (640)
211 PRK06175 L-aspartate oxidase; 98.4 5.8E-06 1.2E-10 86.3 14.2 39 29-68 3-41 (433)
212 PRK06370 mercuric reductase; V 98.4 5.4E-06 1.2E-10 87.6 14.2 104 30-197 171-274 (463)
213 PRK06115 dihydrolipoamide dehy 98.4 5.9E-06 1.3E-10 87.3 14.3 106 30-197 174-279 (466)
214 PRK07818 dihydrolipoamide dehy 98.4 4.9E-06 1.1E-10 87.9 13.6 105 30-197 172-276 (466)
215 PRK07804 L-aspartate oxidase; 98.4 5E-06 1.1E-10 89.3 13.7 40 28-67 14-53 (541)
216 KOG3851 Sulfide:quinone oxidor 98.4 2.7E-05 5.8E-10 74.4 16.7 36 29-64 38-75 (446)
217 PRK08958 sdhA succinate dehydr 98.3 3.5E-06 7.7E-11 91.2 12.5 39 29-67 6-44 (588)
218 PRK06327 dihydrolipoamide dehy 98.3 6.1E-06 1.3E-10 87.4 14.0 105 30-197 183-287 (475)
219 PLN02507 glutathione reductase 98.3 5.5E-06 1.2E-10 88.0 13.6 101 30-197 203-303 (499)
220 PRK06912 acoL dihydrolipoamide 98.3 7.2E-06 1.6E-10 86.5 14.3 102 30-197 170-271 (458)
221 PTZ00139 Succinate dehydrogena 98.3 5E-06 1.1E-10 90.4 13.4 40 29-68 28-67 (617)
222 PRK07208 hypothetical protein; 98.3 1.1E-06 2.4E-11 93.3 8.1 43 29-71 3-45 (479)
223 TIGR01373 soxB sarcosine oxida 98.3 7.7E-06 1.7E-10 84.9 14.2 35 29-63 29-65 (407)
224 PRK07845 flavoprotein disulfid 98.3 6.4E-06 1.4E-10 87.0 13.6 101 30-197 177-277 (466)
225 PRK07846 mycothione reductase; 98.3 5.9E-06 1.3E-10 86.8 13.3 101 30-198 166-266 (451)
226 PLN00128 Succinate dehydrogena 98.3 8.4E-06 1.8E-10 88.8 14.8 38 30-67 50-87 (635)
227 TIGR01320 mal_quin_oxido malat 98.3 9.4E-06 2E-10 85.7 14.6 34 31-64 1-36 (483)
228 PRK09078 sdhA succinate dehydr 98.3 6.1E-06 1.3E-10 89.6 13.5 38 30-67 12-49 (598)
229 PRK06854 adenylylsulfate reduc 98.3 5.9E-06 1.3E-10 89.8 13.3 37 29-65 10-48 (608)
230 PRK08010 pyridine nucleotide-d 98.3 7.7E-06 1.7E-10 85.8 13.7 100 30-197 158-257 (441)
231 PRK12845 3-ketosteroid-delta-1 98.3 1.1E-05 2.3E-10 86.8 15.0 42 29-71 15-56 (564)
232 PRK09564 coenzyme A disulfide 98.3 5.7E-06 1.2E-10 86.9 12.5 96 31-190 150-245 (444)
233 TIGR03385 CoA_CoA_reduc CoA-di 98.3 6.4E-06 1.4E-10 86.1 12.7 99 31-197 138-236 (427)
234 PRK12842 putative succinate de 98.3 1.1E-05 2.5E-10 87.3 14.9 40 29-68 8-47 (574)
235 PRK00711 D-amino acid dehydrog 98.3 9.7E-06 2.1E-10 84.4 13.9 34 32-65 2-35 (416)
236 COG1233 Phytoene dehydrogenase 98.3 9.8E-07 2.1E-11 93.4 6.2 52 28-79 1-53 (487)
237 PRK06134 putative FAD-binding 98.3 1.6E-05 3.5E-10 86.1 15.7 43 27-69 9-51 (581)
238 PRK13512 coenzyme A disulfide 98.3 5.1E-06 1.1E-10 87.1 11.4 96 31-197 149-244 (438)
239 TIGR03452 mycothione_red mycot 98.3 9.5E-06 2E-10 85.3 13.3 100 30-197 169-268 (452)
240 PRK06069 sdhA succinate dehydr 98.3 6.4E-06 1.4E-10 89.3 12.3 39 29-67 4-45 (577)
241 PRK06467 dihydrolipoamide dehy 98.3 1.2E-05 2.7E-10 84.9 14.1 103 31-197 175-277 (471)
242 PF00070 Pyr_redox: Pyridine n 98.3 8.2E-07 1.8E-11 69.4 3.9 34 229-265 1-34 (80)
243 COG0578 GlpA Glycerol-3-phosph 98.3 1.3E-05 2.7E-10 83.7 13.7 43 28-70 10-52 (532)
244 TIGR01423 trypano_reduc trypan 98.3 1.2E-05 2.6E-10 85.0 13.7 102 30-197 187-291 (486)
245 PRK12835 3-ketosteroid-delta-1 98.3 1.9E-05 4.1E-10 85.5 15.5 40 29-68 10-49 (584)
246 PRK08626 fumarate reductase fl 98.3 1.2E-05 2.5E-10 88.1 13.8 38 29-66 4-41 (657)
247 PRK12839 hypothetical protein; 98.2 2.4E-05 5.3E-10 84.4 16.1 42 29-70 7-48 (572)
248 PTZ00367 squalene epoxidase; P 98.2 6.6E-06 1.4E-10 88.2 11.6 35 29-63 32-66 (567)
249 PRK14727 putative mercuric red 98.2 1.2E-05 2.5E-10 85.3 13.4 99 30-197 188-286 (479)
250 PRK13339 malate:quinone oxidor 98.2 1.4E-05 3E-10 84.1 13.7 37 30-66 6-44 (497)
251 PLN02815 L-aspartate oxidase 98.2 1.3E-05 2.9E-10 86.5 13.8 38 29-67 28-65 (594)
252 PRK08205 sdhA succinate dehydr 98.2 1.3E-05 2.9E-10 86.8 13.6 37 30-67 5-41 (583)
253 PRK08641 sdhA succinate dehydr 98.2 2.3E-05 5E-10 85.0 15.2 38 30-67 3-40 (589)
254 KOG2614 Kynurenine 3-monooxyge 98.2 6.2E-06 1.3E-10 81.9 9.6 36 30-65 2-37 (420)
255 PRK14694 putative mercuric red 98.2 1.6E-05 3.4E-10 84.1 13.5 99 30-197 178-276 (468)
256 PRK08071 L-aspartate oxidase; 98.2 1.8E-05 3.8E-10 84.5 13.4 38 30-68 3-40 (510)
257 PLN02464 glycerol-3-phosphate 98.2 1.9E-05 4.1E-10 86.1 13.7 38 30-67 71-108 (627)
258 TIGR02374 nitri_red_nirB nitri 98.2 1.2E-05 2.5E-10 90.1 12.2 101 31-197 141-241 (785)
259 COG0665 DadA Glycine/D-amino a 98.2 2.1E-05 4.5E-10 81.0 13.2 39 28-66 2-40 (387)
260 PRK13748 putative mercuric red 98.2 1.6E-05 3.5E-10 86.2 12.9 99 30-197 270-368 (561)
261 PTZ00058 glutathione reductase 98.2 2.1E-05 4.5E-10 84.3 13.3 103 30-197 237-339 (561)
262 PRK08255 salicylyl-CoA 5-hydro 98.2 4.4E-06 9.6E-11 93.3 8.4 99 31-131 1-122 (765)
263 PTZ00052 thioredoxin reductase 98.2 2.6E-05 5.6E-10 83.0 13.9 100 30-197 182-281 (499)
264 PRK12844 3-ketosteroid-delta-1 98.2 3.1E-05 6.7E-10 83.5 14.5 40 29-68 5-44 (557)
265 TIGR01438 TGR thioredoxin and 98.2 2.7E-05 5.9E-10 82.5 13.8 102 31-197 181-282 (484)
266 PRK09231 fumarate reductase fl 98.2 2.3E-05 5.1E-10 84.8 13.5 39 29-67 3-43 (582)
267 PRK14989 nitrite reductase sub 98.1 1.6E-05 3.5E-10 89.2 12.4 102 31-196 146-247 (847)
268 PRK05257 malate:quinone oxidor 98.1 2.6E-05 5.7E-10 82.4 13.2 36 30-65 5-42 (494)
269 PRK12837 3-ketosteroid-delta-1 98.1 4.5E-05 9.7E-10 81.5 15.0 38 29-67 6-43 (513)
270 COG0446 HcaD Uncharacterized N 98.1 2.1E-05 4.5E-10 81.6 12.3 98 30-190 136-236 (415)
271 COG2907 Predicted NAD/FAD-bind 98.1 1.1E-05 2.5E-10 77.8 9.1 39 31-70 9-47 (447)
272 PRK12843 putative FAD-binding 98.1 4.7E-05 1E-09 82.5 15.0 43 29-71 15-57 (578)
273 PRK06292 dihydrolipoamide dehy 98.1 3E-05 6.6E-10 81.9 13.3 104 30-198 169-272 (460)
274 PF06039 Mqo: Malate:quinone o 98.1 2.8E-05 6.1E-10 78.8 12.2 37 30-66 3-41 (488)
275 TIGR01176 fum_red_Fp fumarate 98.1 4E-05 8.6E-10 82.9 14.3 38 30-67 3-42 (580)
276 TIGR01811 sdhA_Bsu succinate d 98.1 3.6E-05 7.8E-10 83.6 14.1 34 33-66 1-34 (603)
277 PRK07395 L-aspartate oxidase; 98.1 2.5E-05 5.5E-10 83.9 12.3 38 29-67 8-45 (553)
278 PRK07843 3-ketosteroid-delta-1 98.1 3.4E-05 7.4E-10 83.2 13.2 39 30-68 7-45 (557)
279 PLN02546 glutathione reductase 98.1 3.6E-05 7.8E-10 82.5 13.1 102 30-197 252-353 (558)
280 PRK09077 L-aspartate oxidase; 98.1 4.6E-05 9.9E-10 81.9 13.9 39 28-67 6-44 (536)
281 PTZ00306 NADH-dependent fumara 98.1 6.4E-05 1.4E-09 87.7 16.0 39 30-68 409-447 (1167)
282 PRK11883 protoporphyrinogen ox 98.1 3.5E-06 7.6E-11 88.7 5.2 41 31-71 1-43 (451)
283 KOG1298 Squalene monooxygenase 98.1 2.2E-05 4.8E-10 76.8 9.8 35 29-63 44-78 (509)
284 PLN02268 probable polyamine ox 98.1 4.1E-06 8.8E-11 87.8 5.2 41 31-71 1-41 (435)
285 PTZ00318 NADH dehydrogenase-li 98.1 3.2E-05 6.9E-10 80.7 11.9 92 31-190 174-279 (424)
286 KOG2404 Fumarate reductase, fl 98.0 2.9E-05 6.3E-10 74.2 10.0 136 32-191 11-206 (477)
287 COG1232 HemY Protoporphyrinoge 98.0 6.3E-06 1.4E-10 84.7 5.9 41 31-71 1-43 (444)
288 PTZ00153 lipoamide dehydrogena 98.0 7.6E-05 1.6E-09 81.3 14.1 111 30-198 312-431 (659)
289 PRK07233 hypothetical protein; 98.0 5.5E-06 1.2E-10 86.7 5.2 40 32-71 1-40 (434)
290 TIGR02485 CobZ_N-term precorri 98.0 5.9E-05 1.3E-09 78.9 12.9 34 35-68 1-36 (432)
291 PRK10262 thioredoxin reductase 98.0 5.7E-05 1.2E-09 75.8 12.3 106 30-197 146-251 (321)
292 COG3349 Uncharacterized conser 98.0 6E-06 1.3E-10 84.7 4.9 41 31-71 1-41 (485)
293 TIGR02733 desat_CrtD C-3',4' d 98.0 8.1E-06 1.8E-10 87.0 5.7 42 30-71 1-42 (492)
294 COG0562 Glf UDP-galactopyranos 98.0 1.9E-05 4.2E-10 75.6 7.5 77 31-118 2-79 (374)
295 PF04820 Trp_halogenase: Trypt 97.9 2.8E-05 6.1E-10 81.5 8.7 60 102-191 152-211 (454)
296 TIGR00562 proto_IX_ox protopor 97.9 9E-06 2E-10 85.9 5.1 41 31-71 3-47 (462)
297 PLN02576 protoporphyrinogen ox 97.9 9.6E-06 2.1E-10 86.5 5.2 41 31-71 13-54 (496)
298 PRK07512 L-aspartate oxidase; 97.9 6.3E-05 1.4E-09 80.3 11.4 34 29-64 8-41 (513)
299 PRK13800 putative oxidoreducta 97.9 8.9E-05 1.9E-09 84.4 13.2 36 29-64 12-47 (897)
300 PLN02676 polyamine oxidase 97.9 1.6E-05 3.4E-10 84.2 6.7 48 29-76 25-74 (487)
301 PLN02568 polyamine oxidase 97.9 1.2E-05 2.6E-10 85.9 5.7 42 30-71 5-51 (539)
302 COG2081 Predicted flavoprotein 97.9 5.6E-05 1.2E-09 75.1 9.7 154 228-397 4-167 (408)
303 PLN02529 lysine-specific histo 97.9 1.1E-05 2.3E-10 88.4 5.1 43 29-71 159-201 (738)
304 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.3E-05 2.9E-10 81.2 5.3 41 31-71 2-42 (377)
305 KOG0685 Flavin-containing amin 97.9 1.2E-05 2.5E-10 81.2 4.7 41 31-71 22-63 (498)
306 TIGR03140 AhpF alkyl hydropero 97.9 0.00011 2.3E-09 78.8 12.3 101 30-197 352-453 (515)
307 TIGR02734 crtI_fam phytoene de 97.9 1.5E-05 3.2E-10 85.3 5.0 39 33-71 1-39 (502)
308 PRK12416 protoporphyrinogen ox 97.8 1.5E-05 3.2E-10 84.3 4.9 41 31-71 2-48 (463)
309 TIGR02730 carot_isom carotene 97.8 1.9E-05 4.1E-10 84.1 5.5 48 31-78 1-49 (493)
310 TIGR02061 aprA adenosine phosp 97.8 0.00015 3.3E-09 78.5 12.2 33 32-64 1-37 (614)
311 TIGR01292 TRX_reduct thioredox 97.8 0.00017 3.7E-09 71.3 11.7 96 30-190 141-237 (300)
312 TIGR02731 phytoene_desat phyto 97.8 2.1E-05 4.6E-10 82.9 5.3 40 32-71 1-40 (453)
313 PF13434 K_oxygenase: L-lysine 97.8 0.00014 3.1E-09 73.1 10.8 138 29-190 189-340 (341)
314 COG0445 GidA Flavin-dependent 97.8 7.1E-05 1.5E-09 76.9 8.4 34 31-64 5-38 (621)
315 COG1231 Monoamine oxidase [Ami 97.8 2.8E-05 6E-10 78.5 5.4 46 26-71 3-48 (450)
316 COG1053 SdhA Succinate dehydro 97.8 0.00015 3.2E-09 77.5 11.2 39 29-67 5-43 (562)
317 PF13454 NAD_binding_9: FAD-NA 97.8 0.00018 3.9E-09 63.9 9.6 34 231-264 1-36 (156)
318 PRK15317 alkyl hydroperoxide r 97.7 0.00028 6.1E-09 75.5 12.0 101 30-197 351-452 (517)
319 PRK13977 myosin-cross-reactive 97.7 5.3E-05 1.2E-09 80.0 6.1 41 30-70 22-66 (576)
320 KOG1336 Monodehydroascorbate/f 97.7 0.00033 7.1E-09 71.0 11.0 106 31-200 214-319 (478)
321 TIGR03169 Nterm_to_SelD pyridi 97.6 0.00037 8.1E-09 71.2 11.2 92 30-190 145-242 (364)
322 TIGR02732 zeta_caro_desat caro 97.6 5.7E-05 1.2E-09 79.8 5.1 40 32-71 1-40 (474)
323 PRK05335 tRNA (uracil-5-)-meth 97.6 7.8E-05 1.7E-09 76.1 5.2 37 29-65 1-37 (436)
324 PTZ00363 rab-GDP dissociation 97.6 7.8E-05 1.7E-09 77.5 5.0 42 30-71 4-45 (443)
325 PLN02328 lysine-specific histo 97.6 0.0001 2.2E-09 81.4 5.9 43 29-71 237-279 (808)
326 COG2509 Uncharacterized FAD-de 97.5 0.0011 2.3E-08 67.0 12.4 58 103-190 172-229 (486)
327 PLN02976 amine oxidase 97.5 0.00011 2.3E-09 84.1 5.9 43 29-71 692-734 (1713)
328 PLN02487 zeta-carotene desatur 97.5 9.2E-05 2E-09 79.3 5.1 41 31-71 76-116 (569)
329 KOG1276 Protoporphyrinogen oxi 97.5 0.0001 2.2E-09 73.4 4.7 44 28-71 9-54 (491)
330 PLN02612 phytoene desaturase 97.5 0.00013 2.9E-09 78.7 6.0 42 29-70 92-133 (567)
331 PRK12834 putative FAD-binding 97.4 0.00015 3.3E-09 78.2 5.3 40 29-68 3-44 (549)
332 PRK12770 putative glutamate sy 97.4 0.0013 2.9E-08 66.8 12.0 34 30-63 172-206 (352)
333 TIGR01316 gltA glutamate synth 97.4 0.0017 3.6E-08 68.4 12.7 34 30-63 272-305 (449)
334 PLN03000 amine oxidase 97.4 0.00019 4.2E-09 79.3 5.4 43 29-71 183-225 (881)
335 TIGR02462 pyranose_ox pyranose 97.4 0.0002 4.2E-09 76.1 5.1 40 31-70 1-40 (544)
336 PF01134 GIDA: Glucose inhibit 97.4 0.00021 4.5E-09 72.3 5.0 48 347-395 97-150 (392)
337 TIGR03143 AhpF_homolog putativ 97.4 0.0011 2.4E-08 71.5 10.9 34 30-63 143-176 (555)
338 PRK11749 dihydropyrimidine deh 97.3 0.0019 4E-08 68.2 11.9 67 30-135 273-340 (457)
339 PRK12831 putative oxidoreducta 97.3 0.0079 1.7E-07 63.5 16.0 34 30-63 281-314 (464)
340 PRK01438 murD UDP-N-acetylmura 97.2 0.00044 9.6E-09 73.4 6.1 33 30-62 16-48 (480)
341 TIGR00137 gid_trmFO tRNA:m(5)U 97.2 0.00036 7.7E-09 71.7 5.0 36 31-66 1-36 (433)
342 PLN02463 lycopene beta cyclase 97.2 0.00091 2E-08 69.9 7.8 50 348-398 117-170 (447)
343 COG0029 NadB Aspartate oxidase 97.2 0.0021 4.5E-08 65.8 9.7 32 32-64 9-40 (518)
344 PLN02852 ferredoxin-NADP+ redu 97.2 0.00035 7.6E-09 73.4 4.4 39 225-264 24-62 (491)
345 KOG2852 Possible oxidoreductas 97.2 0.0028 6.1E-08 60.1 9.8 38 30-67 10-53 (380)
346 KOG2495 NADH-dehydrogenase (ub 97.2 0.00082 1.8E-08 67.1 6.5 103 31-198 219-335 (491)
347 PF00732 GMC_oxred_N: GMC oxid 97.1 0.00041 8.9E-09 68.6 3.9 34 31-64 1-35 (296)
348 KOG2311 NAD/FAD-utilizing prot 97.1 0.0015 3.2E-08 66.1 7.3 34 29-62 27-60 (679)
349 PRK06847 hypothetical protein; 97.1 0.0024 5.2E-08 65.4 9.3 35 227-264 4-38 (375)
350 KOG2844 Dimethylglycine dehydr 97.1 0.0018 4E-08 68.0 8.0 62 98-190 181-242 (856)
351 TIGR01789 lycopene_cycl lycope 97.0 0.0016 3.5E-08 66.6 7.5 33 364-397 106-138 (370)
352 PF05834 Lycopene_cycl: Lycope 97.0 0.0013 2.7E-08 67.5 6.4 49 349-398 91-143 (374)
353 KOG2853 Possible oxidoreductas 97.0 0.013 2.8E-07 57.0 12.4 42 30-71 86-140 (509)
354 PRK12810 gltD glutamate syntha 96.9 0.0079 1.7E-07 63.7 12.1 34 30-63 281-315 (471)
355 COG3075 GlpB Anaerobic glycero 96.9 0.0011 2.4E-08 63.9 4.7 35 29-63 1-35 (421)
356 PLN02172 flavin-containing mon 96.9 0.0028 6E-08 66.7 8.0 34 30-63 204-237 (461)
357 PRK12814 putative NADPH-depend 96.9 0.03 6.4E-07 61.8 16.3 35 29-63 322-357 (652)
358 PRK12778 putative bifunctional 96.8 0.027 5.9E-07 63.2 15.8 34 30-63 570-604 (752)
359 TIGR01318 gltD_gamma_fam gluta 96.8 0.036 7.8E-07 58.6 15.9 35 29-63 281-316 (467)
360 KOG0042 Glycerol-3-phosphate d 96.8 0.0019 4E-08 66.4 5.5 41 30-70 67-107 (680)
361 COG3486 IucD Lysine/ornithine 96.8 0.011 2.4E-07 59.1 10.7 46 122-190 294-339 (436)
362 PTZ00188 adrenodoxin reductase 96.8 0.0013 2.9E-08 68.3 4.3 37 226-264 38-74 (506)
363 PRK12769 putative oxidoreducta 96.7 0.048 1E-06 60.3 16.3 34 30-63 468-502 (654)
364 PRK02106 choline dehydrogenase 96.7 0.0019 4E-08 70.0 5.1 34 30-63 5-39 (560)
365 COG3573 Predicted oxidoreducta 96.7 0.0027 5.8E-08 61.4 5.4 44 28-71 3-48 (552)
366 TIGR01372 soxA sarcosine oxida 96.7 0.011 2.3E-07 68.4 11.3 96 30-196 317-413 (985)
367 PRK12779 putative bifunctional 96.7 0.052 1.1E-06 62.1 16.5 34 30-63 447-480 (944)
368 KOG1346 Programmed cell death 96.6 0.01 2.2E-07 59.2 9.1 99 31-196 348-451 (659)
369 COG4529 Uncharacterized protei 96.6 0.0026 5.7E-08 65.0 5.3 37 228-264 2-38 (474)
370 PRK09853 putative selenate red 96.6 0.0042 9E-08 70.3 7.2 37 225-264 537-573 (1019)
371 KOG4254 Phytoene desaturase [C 96.5 0.0024 5.1E-08 64.3 4.1 44 28-71 12-55 (561)
372 PLN02697 lycopene epsilon cycl 96.5 0.0049 1.1E-07 65.6 6.7 50 347-397 194-248 (529)
373 PF07992 Pyr_redox_2: Pyridine 96.5 0.0018 3.9E-08 59.9 2.9 32 229-263 1-32 (201)
374 PRK05868 hypothetical protein; 96.5 0.0097 2.1E-07 60.9 8.3 34 228-264 2-35 (372)
375 PRK05192 tRNA uridine 5-carbox 96.4 0.014 2.9E-07 62.7 9.4 32 229-263 6-37 (618)
376 PRK12809 putative oxidoreducta 96.4 0.096 2.1E-06 57.7 16.4 34 30-63 451-485 (639)
377 TIGR01790 carotene-cycl lycope 96.4 0.0074 1.6E-07 62.1 7.3 33 229-264 1-33 (388)
378 KOG0405 Pyridine nucleotide-di 96.4 0.013 2.9E-07 57.1 8.0 105 29-199 188-292 (478)
379 PF03486 HI0933_like: HI0933-l 96.4 0.00058 1.3E-08 70.3 -1.3 51 347-398 111-167 (409)
380 PRK07236 hypothetical protein; 96.3 0.029 6.4E-07 57.7 10.6 36 226-264 5-40 (386)
381 TIGR03378 glycerol3P_GlpB glyc 96.2 0.006 1.3E-07 62.6 4.9 33 31-63 1-33 (419)
382 PRK07588 hypothetical protein; 96.2 0.021 4.6E-07 58.9 9.0 33 229-264 2-34 (391)
383 PLN02785 Protein HOTHEAD 96.2 0.0067 1.4E-07 65.7 5.3 35 29-64 54-88 (587)
384 PRK09897 hypothetical protein; 96.1 0.017 3.7E-07 61.6 8.2 36 228-264 2-37 (534)
385 PRK08163 salicylate hydroxylas 96.1 0.014 3.1E-07 60.2 7.1 35 227-264 4-38 (396)
386 PRK13984 putative oxidoreducta 96.1 0.16 3.4E-06 55.7 15.6 31 30-60 418-454 (604)
387 TIGR01810 betA choline dehydro 96.0 0.0054 1.2E-07 66.0 4.0 33 32-64 1-34 (532)
388 TIGR02032 GG-red-SF geranylger 96.0 0.018 3.9E-07 56.5 7.4 33 229-264 2-34 (295)
389 KOG3851 Sulfide:quinone oxidor 96.0 0.0058 1.3E-07 58.9 3.5 42 227-269 39-81 (446)
390 PRK08773 2-octaprenyl-3-methyl 96.0 0.019 4.1E-07 59.2 7.5 51 347-398 115-170 (392)
391 PRK06753 hypothetical protein; 96.0 0.043 9.3E-07 56.1 10.0 33 229-264 2-34 (373)
392 PRK12771 putative glutamate sy 95.9 0.21 4.6E-06 54.2 15.8 35 29-63 266-301 (564)
393 PRK09126 hypothetical protein; 95.9 0.044 9.6E-07 56.5 10.1 34 228-264 4-37 (392)
394 COG2303 BetA Choline dehydroge 95.9 0.0083 1.8E-07 64.4 4.7 36 28-63 5-40 (542)
395 KOG4716 Thioredoxin reductase 95.8 0.024 5.3E-07 55.1 6.6 101 31-190 199-299 (503)
396 PRK06834 hypothetical protein; 95.8 0.049 1.1E-06 57.9 9.7 34 228-264 4-37 (488)
397 TIGR00136 gidA glucose-inhibit 95.8 0.029 6.3E-07 60.2 7.9 32 229-263 2-33 (617)
398 COG1251 NirB NAD(P)H-nitrite r 95.7 0.02 4.3E-07 61.4 6.4 100 31-196 146-245 (793)
399 TIGR03315 Se_ygfK putative sel 95.7 0.094 2E-06 59.8 12.1 35 29-63 665-701 (1012)
400 PRK12775 putative trifunctiona 95.7 0.093 2E-06 60.6 12.3 34 29-62 570-604 (1006)
401 COG0492 TrxB Thioredoxin reduc 95.7 0.12 2.6E-06 51.1 11.5 96 29-190 142-237 (305)
402 TIGR01317 GOGAT_sm_gam glutama 95.7 0.11 2.4E-06 55.1 11.9 35 30-64 283-318 (485)
403 KOG2960 Protein involved in th 95.7 0.003 6.5E-08 57.2 0.0 41 31-71 77-120 (328)
404 PRK05714 2-octaprenyl-3-methyl 95.6 0.052 1.1E-06 56.2 9.2 49 349-398 116-169 (405)
405 PRK07045 putative monooxygenas 95.5 0.021 4.6E-07 58.8 5.8 34 228-264 6-39 (388)
406 KOG2755 Oxidoreductase [Genera 95.5 0.049 1.1E-06 51.2 7.5 33 230-263 2-34 (334)
407 TIGR01984 UbiH 2-polyprenyl-6- 95.5 0.034 7.5E-07 57.0 7.3 50 347-397 107-162 (382)
408 PRK01438 murD UDP-N-acetylmura 95.5 0.019 4.2E-07 61.0 5.6 36 225-263 14-49 (480)
409 TIGR01470 cysG_Nterm siroheme 95.5 0.022 4.7E-07 53.0 5.2 34 225-261 7-40 (205)
410 PRK07494 2-octaprenyl-6-methox 95.5 0.03 6.6E-07 57.6 6.8 34 228-264 8-41 (388)
411 COG0654 UbiH 2-polyprenyl-6-me 95.4 0.041 8.9E-07 56.7 7.5 50 347-397 106-162 (387)
412 PF04820 Trp_halogenase: Trypt 95.4 0.042 9.1E-07 57.8 7.6 52 346-398 155-212 (454)
413 PRK07333 2-octaprenyl-6-methox 95.4 0.042 9.1E-07 56.8 7.6 51 347-398 113-168 (403)
414 PRK07608 ubiquinone biosynthes 95.3 0.034 7.3E-07 57.2 6.2 33 229-264 7-39 (388)
415 PRK05329 anaerobic glycerol-3- 95.2 0.12 2.5E-06 53.7 10.0 93 34-190 219-317 (422)
416 COG1206 Gid NAD(FAD)-utilizing 95.2 0.019 4E-07 55.7 3.8 37 29-65 2-38 (439)
417 PF01210 NAD_Gly3P_dh_N: NAD-d 95.2 0.023 5E-07 50.4 4.2 31 32-62 1-31 (157)
418 PRK10157 putative oxidoreducta 95.2 0.055 1.2E-06 56.5 7.6 33 229-264 7-39 (428)
419 KOG2665 Predicted FAD-dependen 95.2 0.017 3.6E-07 55.7 3.2 38 29-66 47-86 (453)
420 PRK08849 2-octaprenyl-3-methyl 95.1 0.066 1.4E-06 55.1 7.9 32 229-263 5-36 (384)
421 PRK08020 ubiF 2-octaprenyl-3-m 95.1 0.085 1.9E-06 54.3 8.8 33 228-263 6-38 (391)
422 PRK06567 putative bifunctional 95.1 0.031 6.8E-07 62.8 5.5 36 225-263 381-416 (1028)
423 TIGR01988 Ubi-OHases Ubiquinon 95.1 0.05 1.1E-06 55.8 6.8 33 229-264 1-33 (385)
424 KOG1800 Ferredoxin/adrenodoxin 95.1 0.054 1.2E-06 53.7 6.5 103 227-399 20-122 (468)
425 TIGR03219 salicylate_mono sali 94.9 0.06 1.3E-06 56.0 7.0 34 229-264 2-35 (414)
426 PRK06184 hypothetical protein; 94.9 0.093 2E-06 56.1 8.5 34 228-264 4-37 (502)
427 COG2072 TrkA Predicted flavopr 94.9 0.13 2.8E-06 53.9 9.3 35 227-263 8-42 (443)
428 TIGR00275 flavoprotein, HI0933 94.8 0.026 5.6E-07 58.4 3.9 31 231-264 1-31 (400)
429 PF00743 FMO-like: Flavin-bind 94.8 0.073 1.6E-06 57.0 7.4 33 30-62 183-215 (531)
430 KOG2311 NAD/FAD-utilizing prot 94.8 0.065 1.4E-06 54.6 6.4 31 229-262 30-60 (679)
431 PRK06475 salicylate hydroxylas 94.7 0.071 1.5E-06 55.2 7.0 34 228-264 3-36 (400)
432 KOG1399 Flavin-containing mono 94.7 0.18 3.8E-06 52.6 9.5 36 226-264 5-40 (448)
433 PRK11445 putative oxidoreducta 94.7 0.1 2.2E-06 53.0 7.7 32 229-264 3-34 (351)
434 PLN00093 geranylgeranyl diphos 94.6 0.099 2.1E-06 54.9 7.7 34 228-264 40-73 (450)
435 PRK08850 2-octaprenyl-6-methox 94.6 0.11 2.4E-06 53.8 8.0 32 228-262 5-36 (405)
436 COG0569 TrkA K+ transport syst 94.6 0.042 9.1E-07 51.9 4.4 33 31-63 1-33 (225)
437 PRK06718 precorrin-2 dehydroge 94.6 0.078 1.7E-06 49.1 6.1 34 225-261 8-41 (202)
438 PRK05732 2-octaprenyl-6-methox 94.5 0.1 2.2E-06 53.7 7.5 32 228-262 4-38 (395)
439 PRK08013 oxidoreductase; Provi 94.5 0.078 1.7E-06 54.9 6.5 34 228-264 4-37 (400)
440 TIGR01470 cysG_Nterm siroheme 94.5 0.058 1.3E-06 50.1 4.9 33 30-62 9-41 (205)
441 PRK07364 2-octaprenyl-6-methox 94.5 0.12 2.6E-06 53.7 7.9 34 228-264 19-52 (415)
442 TIGR02028 ChlP geranylgeranyl 94.3 0.085 1.8E-06 54.6 6.4 33 229-264 2-34 (398)
443 PF03721 UDPG_MGDP_dh_N: UDP-g 94.3 0.044 9.6E-07 50.0 3.8 34 31-64 1-34 (185)
444 PRK07190 hypothetical protein; 94.3 0.16 3.4E-06 54.0 8.5 34 228-264 6-39 (487)
445 PF01593 Amino_oxidase: Flavin 94.3 0.04 8.8E-07 57.0 3.9 32 40-71 1-32 (450)
446 PF13241 NAD_binding_7: Putati 94.2 0.037 8E-07 45.2 2.8 33 30-62 7-39 (103)
447 TIGR02023 BchP-ChlP geranylger 94.2 0.13 2.9E-06 52.9 7.5 31 229-262 2-32 (388)
448 PRK02705 murD UDP-N-acetylmura 94.1 0.055 1.2E-06 57.1 4.6 34 32-65 2-35 (459)
449 PRK08401 L-aspartate oxidase; 94.1 0.34 7.4E-06 51.2 10.5 33 228-263 2-34 (466)
450 PRK08244 hypothetical protein; 94.1 0.14 3.1E-06 54.5 7.7 33 229-264 4-36 (493)
451 PF02737 3HCDH_N: 3-hydroxyacy 94.1 0.07 1.5E-06 48.5 4.5 32 32-63 1-32 (180)
452 PF06100 Strep_67kDa_ant: Stre 94.1 0.065 1.4E-06 55.5 4.6 40 31-70 3-46 (500)
453 PRK04176 ribulose-1,5-biphosph 94.0 0.36 7.8E-06 46.6 9.5 35 227-264 25-59 (257)
454 COG0445 GidA Flavin-dependent 94.0 0.071 1.5E-06 55.5 4.8 32 228-262 5-36 (621)
455 TIGR03862 flavo_PP4765 unchara 94.0 0.19 4.1E-06 51.2 7.9 62 97-190 76-140 (376)
456 PF13738 Pyr_redox_3: Pyridine 94.0 0.059 1.3E-06 49.7 4.0 35 29-63 166-200 (203)
457 PRK05562 precorrin-2 dehydroge 93.9 0.12 2.5E-06 48.4 5.7 72 225-394 23-94 (223)
458 PF01488 Shikimate_DH: Shikima 93.9 0.1 2.2E-06 44.9 5.0 33 30-62 12-45 (135)
459 KOG3855 Monooxygenase involved 93.9 0.08 1.7E-06 53.1 4.7 38 29-66 35-78 (481)
460 PRK06719 precorrin-2 dehydroge 93.8 0.09 1.9E-06 46.6 4.6 32 30-61 13-44 (157)
461 PRK06617 2-octaprenyl-6-methox 93.7 0.21 4.5E-06 51.2 7.7 32 229-263 3-34 (374)
462 PRK14106 murD UDP-N-acetylmura 93.5 0.094 2E-06 55.2 5.0 34 30-63 5-38 (450)
463 PF00996 GDI: GDP dissociation 93.5 0.099 2.2E-06 54.1 4.9 42 30-71 4-45 (438)
464 PRK07530 3-hydroxybutyryl-CoA 93.5 0.11 2.3E-06 51.4 5.0 33 31-63 5-37 (292)
465 TIGR03197 MnmC_Cterm tRNA U-34 93.5 0.26 5.5E-06 50.6 8.0 59 101-191 132-190 (381)
466 COG0493 GltD NADPH-dependent g 93.4 0.06 1.3E-06 56.3 3.2 38 224-264 120-157 (457)
467 PRK06718 precorrin-2 dehydroge 93.4 0.11 2.5E-06 48.1 4.8 32 30-61 10-41 (202)
468 COG3380 Predicted NAD/FAD-depe 93.4 0.32 6.9E-06 46.3 7.6 31 229-262 3-33 (331)
469 PRK06996 hypothetical protein; 93.4 0.11 2.4E-06 53.6 5.2 37 227-263 11-48 (398)
470 PRK06183 mhpA 3-(3-hydroxyphen 93.3 0.26 5.6E-06 53.2 8.0 35 227-264 10-44 (538)
471 PF12831 FAD_oxidored: FAD dep 93.3 0.04 8.6E-07 57.6 1.6 33 229-264 1-33 (428)
472 KOG2614 Kynurenine 3-monooxyge 93.3 0.27 5.9E-06 49.6 7.3 34 228-264 3-36 (420)
473 PRK10015 oxidoreductase; Provi 93.2 0.14 3E-06 53.6 5.5 33 229-264 7-39 (429)
474 PRK06249 2-dehydropantoate 2-r 93.1 0.14 3E-06 51.1 5.3 35 28-62 3-37 (313)
475 COG3634 AhpF Alkyl hydroperoxi 93.1 0.84 1.8E-05 45.0 10.1 34 30-63 354-387 (520)
476 KOG0399 Glutamate synthase [Am 93.1 0.065 1.4E-06 59.8 2.9 37 225-264 1783-1819(2142)
477 KOG4405 GDP dissociation inhib 93.0 0.11 2.3E-06 52.0 4.0 43 29-71 7-49 (547)
478 PRK06129 3-hydroxyacyl-CoA deh 93.0 0.11 2.5E-06 51.6 4.3 32 32-63 4-35 (308)
479 PRK07538 hypothetical protein; 92.9 0.16 3.5E-06 52.7 5.6 33 229-264 2-34 (413)
480 PF01262 AlaDh_PNT_C: Alanine 92.8 0.16 3.5E-06 45.6 4.6 33 31-63 21-53 (168)
481 PRK06481 fumarate reductase fl 92.7 0.62 1.4E-05 49.8 9.8 34 228-264 62-95 (506)
482 TIGR01989 COQ6 Ubiquinone bios 92.7 0.36 7.9E-06 50.5 7.8 50 348-398 120-184 (437)
483 KOG3923 D-aspartate oxidase [A 92.7 0.11 2.5E-06 49.8 3.5 35 29-63 2-43 (342)
484 PF02558 ApbA: Ketopantoate re 92.7 0.17 3.7E-06 44.3 4.6 30 33-62 1-30 (151)
485 PRK09260 3-hydroxybutyryl-CoA 92.6 0.14 3E-06 50.4 4.3 33 31-63 2-34 (288)
486 COG0644 FixC Dehydrogenases (f 92.4 0.25 5.3E-06 51.1 6.1 33 229-264 5-37 (396)
487 PRK08229 2-dehydropantoate 2-r 92.4 0.17 3.7E-06 51.0 4.8 32 31-62 3-34 (341)
488 COG1004 Ugd Predicted UDP-gluc 92.3 0.16 3.4E-06 51.1 4.1 33 31-63 1-33 (414)
489 PRK05708 2-dehydropantoate 2-r 92.1 0.2 4.4E-06 49.7 4.9 33 30-62 2-34 (305)
490 PRK07066 3-hydroxybutyryl-CoA 92.1 0.18 3.9E-06 50.2 4.4 33 31-63 8-40 (321)
491 PF00899 ThiF: ThiF family; I 92.0 0.2 4.4E-06 43.1 4.1 33 30-62 2-35 (135)
492 PRK08293 3-hydroxybutyryl-CoA 92.0 0.18 4E-06 49.5 4.4 33 31-63 4-36 (287)
493 TIGR00518 alaDH alanine dehydr 91.9 0.2 4.4E-06 51.1 4.6 32 31-62 168-199 (370)
494 PRK04148 hypothetical protein; 91.9 0.14 3.1E-06 43.6 3.0 33 31-64 18-50 (134)
495 PF02558 ApbA: Ketopantoate re 91.9 0.18 3.8E-06 44.2 3.7 31 230-263 1-31 (151)
496 KOG1238 Glucose dehydrogenase/ 91.9 0.17 3.6E-06 54.0 4.0 37 29-65 56-93 (623)
497 PRK07819 3-hydroxybutyryl-CoA 91.9 0.18 3.9E-06 49.5 4.1 33 31-63 6-38 (286)
498 cd01080 NAD_bind_m-THF_DH_Cycl 91.9 0.24 5.1E-06 44.4 4.5 33 30-62 44-77 (168)
499 PRK05808 3-hydroxybutyryl-CoA 91.8 0.21 4.5E-06 49.0 4.5 33 31-63 4-36 (282)
500 PRK11064 wecC UDP-N-acetyl-D-m 91.8 0.19 4.1E-06 52.2 4.4 34 31-64 4-37 (415)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=3.1e-71 Score=581.16 Aligned_cols=434 Identities=29% Similarity=0.526 Sum_probs=263.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc----------ccCcccccCCcCceeeCCCCCCCCCCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ----------TIESTKLQTPKSFYQFSDFAWPNSVTETF 100 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (523)
|+|+|||||++||++|++|++.|+++++||+++++||+|++ .|+++++|+++++|.|+|+|+|++ .+.|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~-~p~f 80 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPED-YPDF 80 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCC-CSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCC-CCCC
Confidence 78999999999999999999999999999999999999984 589999999999999999999976 5789
Q ss_pred CChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEe
Q 009897 101 PDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQV 180 (523)
Q Consensus 101 ~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 180 (523)
++++++.+||++||++|++.++|+||++|++|++.. |. ...++|+|++++. ++.++..|
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~--d~---------------~~~~~W~V~~~~~----g~~~~~~f 139 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDP--DF---------------SATGKWEVTTEND----GKEETEEF 139 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEET--TT---------------T-ETEEEEEETTT----TEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeecc--cc---------------CCCceEEEEeecC----CeEEEEEe
Confidence 999999999999999999999999999999999864 10 1246899987543 23447789
Q ss_pred CEEEEeeeecCCCCCCCC--CCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEE
Q 009897 181 DFVILCIGRYSDLPNTPD--FPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTL 258 (523)
Q Consensus 181 d~vVlAtG~~s~~p~~p~--~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~ 258 (523)
|+||+|||++ ..|++|. +| |++.|+|+++||.+|+++ +.++||+|+|||+|.||+|+|.+++..++ +|++
T Consensus 140 D~VvvatG~~-~~P~~P~~~~~---G~e~F~G~i~HS~~yr~~-~~f~gKrVlVVG~g~Sg~DIa~el~~~a~---~v~~ 211 (531)
T PF00743_consen 140 DAVVVATGHF-SKPNIPEPSFP---GLEKFKGEIIHSKDYRDP-EPFKGKRVLVVGGGNSGADIAVELSRVAK---KVYL 211 (531)
T ss_dssp CEEEEEE-SS-SCESB-----C---TGGGHCSEEEEGGG--TG-GGGTTSEEEEESSSHHHHHHHHHHTTTSC---CEEE
T ss_pred CeEEEcCCCc-CCCCCChhhhh---hhhcCCeeEEccccCcCh-hhcCCCEEEEEeCCHhHHHHHHHHHHhcC---CeEE
Confidence 9999999999 6999995 88 999999999999999988 77999999999999999999999999865 4999
Q ss_pred EEeeceeEecCccCCC---cchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcc
Q 009897 259 LFKTVHWMVPDYFLWS---TFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSF 335 (523)
Q Consensus 259 ~~r~~~~~~p~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 335 (523)
+.|++.|++|+....| +....+|+..++.... . .++.+...++.++..+....+++.|.+..
T Consensus 212 s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~l------------p---~~~~~~~~~~~l~~~~~~~~~gl~p~~~~ 276 (531)
T PF00743_consen 212 STRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNL------------P---ESLSNWLLEKKLNKRFDHENYGLKPKHRF 276 (531)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred EEecccccccccccccccccccccccccccccccc------------c---ccccccccccccccccccccccccccccc
Confidence 9999999999875434 3334444433322110 0 11112223334444455566777777665
Q ss_pred cccccCcceeecCcchhhhccCCCEEEEecCceEEecCcEEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhhc
Q 009897 336 LNQISSCMFTVLPRNFYDRVQGGGLSLMKSRSFTFCKNGLVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQIT 415 (523)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~i~~~~~~~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~ 415 (523)
. +..+.+++++.+.+.+|+|+++ ..|.++++++|+|.||++..++|+||+||||+.++++++ ...+. ..
T Consensus 277 ~-----~~~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~---~~~~~--~~ 345 (531)
T PF00743_consen 277 F-----SQHPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLD---ESLIK--VD 345 (531)
T ss_dssp ---------------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB----TTTT---S-
T ss_pred c-----cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc---ccccc--cc
Confidence 3 4457789999999999999976 558999999999999998347999999999999887543 22111 11
Q ss_pred CCCcccccccccCCC--CCeEEecccCCCC-chhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCC
Q 009897 416 GSSAPLYREGIHPQI--PQLAILGYADSPS-ILRTTEMRSKCLAHFLAGNSNLPTIKEMEHNVMNWEKSMRLYAGESYRR 492 (523)
Q Consensus 416 ~~~~~ly~~~~~~~~--p~l~~iG~~~~~~-~~~~ae~Qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (523)
.+...||+++|+|++ |+|+|||++.+.+ .++++|+||||+|++|+|+.+||+.++|.+++.++.+++.+.... ..+
T Consensus 346 ~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~-~~~ 424 (531)
T PF00743_consen 346 DNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGF-SPR 424 (531)
T ss_dssp SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SH-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 223489999999975 8999999987653 578999999999999999999999999999999887776544321 233
Q ss_pred CceeeecccchHHHHHhHcCCCCCcccccc
Q 009897 493 SCVSVLLQKYSNDQLCKDMGCNSKKEKMVF 522 (523)
Q Consensus 493 ~~~~~~~~~~y~d~L~~d~g~~~~~~~~~~ 522 (523)
++...+ +..|+|+|++++|+.|+.++.|+
T Consensus 425 ~~~~~d-~~~y~deLA~~iG~~P~~~~l~~ 453 (531)
T PF00743_consen 425 HTIQVD-YIDYMDELAREIGCKPNFWKLFL 453 (531)
T ss_dssp HHHHHH-HHHHHHTTS--------------
T ss_pred cccccc-ccccccccccccccccccccccc
Confidence 555555 89999999999999999887665
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.6e-58 Score=479.53 Aligned_cols=369 Identities=25% Similarity=0.456 Sum_probs=294.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc---------------------ccCcccccCCcCce
Q 009897 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ---------------------TIESTKLQTPKSFY 85 (523)
Q Consensus 27 ~~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~---------------------~~~~~~~~~~~~~~ 85 (523)
++..++|+|||||++||+||++|++.|++|+|||+++.+||+|.+ .|+++++|+|+..|
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m 86 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM 86 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence 445699999999999999999999999999999999999999965 37888999999999
Q ss_pred eeCCCCCCCC------CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCC
Q 009897 86 QFSDFAWPNS------VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSG 159 (523)
Q Consensus 86 ~~~~~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
.|+++|+++. ..+.||++.++.+||++|++++++.+.|+|+++|++|++.. +
T Consensus 87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~----------------------~ 144 (461)
T PLN02172 87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD----------------------G 144 (461)
T ss_pred cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC----------------------C
Confidence 9999998653 13679999999999999999999977799999999999864 5
Q ss_pred CeEEEEeecccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCH
Q 009897 160 KWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSA 239 (523)
Q Consensus 160 ~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg 239 (523)
+|.|+++++. +...+..||+||+|||++ ..|++|++| |++.|.|.++|++.|+.+ +.+++|+|+|||+|.||
T Consensus 145 ~w~V~~~~~~---~~~~~~~~d~VIvAtG~~-~~P~~P~ip---G~~~f~G~~iHs~~yr~~-~~~~gk~VvVVG~G~Sg 216 (461)
T PLN02172 145 KWRVQSKNSG---GFSKDEIFDAVVVCNGHY-TEPNVAHIP---GIKSWPGKQIHSHNYRVP-DPFKNEVVVVIGNFASG 216 (461)
T ss_pred eEEEEEEcCC---CceEEEEcCEEEEeccCC-CCCcCCCCC---CcccCCceEEEecccCCc-cccCCCEEEEECCCcCH
Confidence 7999987542 122357899999999998 689999999 999999999999999987 67899999999999999
Q ss_pred HHHHHHHHHhcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHH
Q 009897 240 VDVAAEVANRNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLK 319 (523)
Q Consensus 240 ~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (523)
+|+|.+|+..++. ||++.|++... ...
T Consensus 217 ~diA~~L~~~a~~---V~l~~r~~~~~--~~~------------------------------------------------ 243 (461)
T PLN02172 217 ADISRDIAKVAKE---VHIASRASESD--TYE------------------------------------------------ 243 (461)
T ss_pred HHHHHHHHHhCCe---EEEEEeecccc--ccc------------------------------------------------
Confidence 9999999998754 99999975310 000
Q ss_pred hcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecCceEEe-cCcEEEcCCceeeeccEEEEecCCCCC
Q 009897 320 WTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSRSFTFC-KNGLVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 320 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~i~~~~-~~~v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
.++ .| ..++.+ ...|..+. +++|+|+||++ +++|.||+||||+++
T Consensus 244 -~~~------~~-------------------------~~~v~~-~~~I~~~~~~g~V~f~DG~~-~~~D~Ii~~TGy~~~ 289 (461)
T PLN02172 244 -KLP------VP-------------------------QNNLWM-HSEIDTAHEDGSIVFKNGKV-VYADTIVHCTGYKYH 289 (461)
T ss_pred -cCc------CC-------------------------CCceEE-CCcccceecCCeEEECCCCC-ccCCEEEECCcCCcc
Confidence 000 00 011111 12233333 34599999998 999999999999999
Q ss_pred ccccccccchhhhhhhcCC-CcccccccccCCC-CCeEEecccCCCCchhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 009897 399 EKLKNIFKSTYFQKQITGS-SAPLYREGIHPQI-PQLAILGYADSPSILRTTEMRSKCLAHFLAGNSNLPTIKEMEHNVM 476 (523)
Q Consensus 399 ~~l~~~~~~~~l~~~~~~~-~~~ly~~~~~~~~-p~l~~iG~~~~~~~~~~ae~Qa~~~a~~l~g~~~lp~~~~~~~~~~ 476 (523)
+++++.... + .+.+. ..+||+++|++.+ |+|+|+|.+....+++++|+||+|+|++|+|+.+||+.++|.++++
T Consensus 290 ~pfL~~~~~--i--~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~ 365 (461)
T PLN02172 290 FPFLETNGY--M--RIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDIN 365 (461)
T ss_pred ccccCcccc--e--eeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence 876542110 0 01111 2279999999986 9999999987777889999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCceeeecccchHHHHHhHcCCCCCc
Q 009897 477 NWEKSMRLYAGESYRRSCVSVLLQKYSNDQLCKDMGCNSKK 517 (523)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~L~~d~g~~~~~ 517 (523)
++.+.+++....--..|.+... +..|+|+|++++|++|..
T Consensus 366 ~~~~~~~~~g~~~r~~h~~~~~-~~~y~~~la~~~g~~~~~ 405 (461)
T PLN02172 366 AWYASLEALGIPKRYTHKLGKI-QSEYLNWIAEECGCPLVE 405 (461)
T ss_pred HHHHHHHhcCCCCceeEEcCcc-HHHHHHHHHHHhCCCCCH
Confidence 8877654432110112444444 789999999999998854
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-49 Score=404.60 Aligned_cols=366 Identities=28% Similarity=0.458 Sum_probs=285.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccc----------cCcccccCCcCceeeCCCCCCCCCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT----------IESTKLQTPKSFYQFSDFAWPNSVT 97 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (523)
+|.++|+|||||||||++|+.|+++|++++||||++++||.|.+. |..+++|.|++.|+|+++|+++...
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 467999999999999999999999999999999999999999985 9999999999999999999998756
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeE
Q 009897 98 ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEA 177 (523)
Q Consensus 98 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (523)
..+|++.++.+||++||++|++.+.|+|+++|..++... ++.|.|.+.+.. ++ ...
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~---------------------~gkW~V~~~~~~--~~-~~~ 139 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID---------------------KGKWRVTTKDNG--TQ-IEE 139 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc---------------------CCceeEEEecCC--cc-eeE
Confidence 677999999999999999999999999999999999864 268999998764 11 457
Q ss_pred EEeCEEEEeeeecCCCCCCCCCCCCCC--CCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccC
Q 009897 178 YQVDFVILCIGRYSDLPNTPDFPMNKG--PEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYP 255 (523)
Q Consensus 178 ~~~d~vVlAtG~~s~~p~~p~~p~~~g--~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 255 (523)
..||.||+|||++ ..|++|.+| | ++.|.|+++||++|+.+ +.+.+|+|+|||+|.||+|++.+++..+++
T Consensus 140 ~ifd~VvVctGh~-~~P~~P~~~---g~~~~~f~G~~iHS~~Yk~~-e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~--- 211 (448)
T KOG1399|consen 140 EIFDAVVVCTGHY-VEPRIPQIP---GPGIESFKGKIIHSHDYKSP-EKFRDKVVLVVGCGNSGMDISLDLLRVAKE--- 211 (448)
T ss_pred EEeeEEEEcccCc-CCCCCCcCC---CCchhhcCCcceehhhccCc-ccccCceEEEECCCccHHHHHHHHHHhccC---
Confidence 8999999999999 689999998 6 77999999999999987 789999999999999999999999998764
Q ss_pred EEEEEeec-eeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCc
Q 009897 256 CTLLFKTV-HWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHS 334 (523)
Q Consensus 256 Vt~~~r~~-~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 334 (523)
|++..+++ .-..+..
T Consensus 212 v~~~~~~~~~~~~~~~---------------------------------------------------------------- 227 (448)
T KOG1399|consen 212 VHLSVVSPKVHVEPPE---------------------------------------------------------------- 227 (448)
T ss_pred cceeeecccccccccc----------------------------------------------------------------
Confidence 88876620 0000000
Q ss_pred ccccccCcceeecCcchhhhccCCCEEEEecCceEEecCcEEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhh
Q 009897 335 FLNQISSCMFTVLPRNFYDRVQGGGLSLMKSRSFTFCKNGLVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQI 414 (523)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~i~~~~~~~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~ 414 (523)
....++..+.. |..+++++.++.++.....+|.||+||||...+++++.... ...
T Consensus 228 --------------------~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~----~~~ 282 (448)
T KOG1399|consen 228 --------------------ILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGL----GTV 282 (448)
T ss_pred --------------------eeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCc----eee
Confidence 00112334444 78888999666555443889999999999988776442211 011
Q ss_pred cC-CCcccccccccCCC-CCeEEecccCCCCchhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCC
Q 009897 415 TG-SSAPLYREGIHPQI-PQLAILGYADSPSILRTTEMRSKCLAHFLAGNSNLPTIKEMEHNVMNWEKSMRLYAGESYRR 492 (523)
Q Consensus 415 ~~-~~~~ly~~~~~~~~-p~l~~iG~~~~~~~~~~ae~Qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (523)
.. ...++|.+++++.+ |.+.++|...-.+.++.+|.|++|++++++|+.++|+.++|..+.....+.+...... ..+
T Consensus 283 ~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~-~~~ 361 (448)
T KOG1399|consen 283 RDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLA-TGR 361 (448)
T ss_pred ccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhccc-ccc
Confidence 11 11389999999886 6777777655446789999999999999999999999999998887765433332211 122
Q ss_pred Cceeee--cccchHHHHHhHcCCCC
Q 009897 493 SCVSVL--LQKYSNDQLCKDMGCNS 515 (523)
Q Consensus 493 ~~~~~~--~~~~y~d~L~~d~g~~~ 515 (523)
++.... ....|...+++..|++.
T Consensus 362 ~t~~~~~~~l~~y~~~~~~~~g~~~ 386 (448)
T KOG1399|consen 362 HTHVPDYDELAEYINWFADLCGFPK 386 (448)
T ss_pred cccccchHHHHHHhhhhhhhcCCCC
Confidence 332221 14556666666666654
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-40 Score=340.80 Aligned_cols=393 Identities=24% Similarity=0.341 Sum_probs=282.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCc-eEEEccCCCCCccccc-ccCcccccCCcCceeeCCCCCCCCCCCCCCChhHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFK-PIVFEARSGIGGVWSQ-TIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKV 106 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (523)
..+||+|||||++||++|++|.+.|.. ++|||+++.+||+|+. +||++++++|+..++|+++|++ +...++...++
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~--~~~~~~~~~~~ 84 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR--WDEAFAPFAEI 84 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC--CcccCCCcccH
Confidence 458999999999999999999999998 9999999999999988 9999999999999999999997 24678888889
Q ss_pred HHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEe
Q 009897 107 MEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILC 186 (523)
Q Consensus 107 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlA 186 (523)
..|+.+++++|++...|.+++.|..++++. ..+.|+|+++++. .. ++++|+||+|
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~--------------------~~~~w~V~~~~~~----~~-~~~a~~vV~A 139 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDE--------------------DTKRWTVTTSDGG----TG-ELTADFVVVA 139 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecC--------------------CCCeEEEEEcCCC----ee-eEecCEEEEe
Confidence 999999999999999999999999998876 2468999998875 11 2779999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeE
Q 009897 187 IGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWM 266 (523)
Q Consensus 187 tG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~ 266 (523)
||.+ +.|++|+|+ |.+.|.|.++||++|.+. ++++||+|+|||+|.||+|++.+|++.+++ ||+++|++.|+
T Consensus 140 TG~~-~~P~iP~~~---G~~~f~g~~~HS~~~~~~-~~~~GKrV~VIG~GaSA~di~~~l~~~ga~---vt~~qRs~~~~ 211 (443)
T COG2072 140 TGHL-SEPYIPDFA---GLDEFKGRILHSADWPNP-EDLRGKRVLVIGAGASAVDIAPELAEVGAS---VTLSQRSPPHI 211 (443)
T ss_pred ecCC-CCCCCCCCC---CccCCCceEEchhcCCCc-cccCCCeEEEECCCccHHHHHHHHHhcCCe---eEEEecCCCce
Confidence 9999 799999999 999999999999999988 789999999999999999999999999854 99999999999
Q ss_pred ecCccCCCcchhhHHHHHHHhc--CCCchhHHHHHhh--hhch----HHHHHHHHHHHHHHhcCC--cccCCCCCCCccc
Q 009897 267 VPDYFLWSTFRSLNRWTELIIH--NPGEGFFSWLLAL--SLSP----LLWLSSKVVESCLKWTFP--LKKYNMIPGHSFL 336 (523)
Q Consensus 267 ~p~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~--~~~~~l~p~~~~~ 336 (523)
.|.............+...+.. ......+...+.. ...+ ......+.....+..... .....+.|.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-- 289 (443)
T COG2072 212 LPKPLLGEEVGGRLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYA-- 289 (443)
T ss_pred ecccccccchHHHHHHhhhCccceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCC--
Confidence 9877522111111111110000 0000000000000 0000 011111111111111111 11112233222
Q ss_pred ccccCcceeecCcchhhhccCCCEEEEecCceEEecCcEEEcCCceeeeccEEEEecCCCC-Cccccccccchhhhhhhc
Q 009897 337 NQISSCMFTVLPRNFYDRVQGGGLSLMKSRSFTFCKNGLVIDGETTPLVTDIVIFATGYKS-DEKLKNIFKSTYFQKQIT 415 (523)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~i~~~~~~~v~l~dG~~~~~~D~VI~ATG~~~-~~~l~~~~~~~~l~~~~~ 415 (523)
..|.+...+..++.....+++.++...+..+.+.++..+++.+ ++.|.++.+||+.. .....+. ......+.
T Consensus 290 ---~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~e~d~i~~~tg~~~~~~~~~~~---~~~~~~~~ 362 (443)
T COG2072 290 ---PGDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGRE-EEADVIITATGLDANDLSGAAG---GYGGDPWD 362 (443)
T ss_pred ---ccccccccccchhhhhhhcccceeeccccccCCcceecCCCcc-ccceEEEecCCCchhheeeecc---cccccccc
Confidence 1444556677899999999999999888888888888888887 99999999999997 3322211 11111111
Q ss_pred CCCcccccccccCCCCCeEEecccCCCCc----hhhHHHHHHHHHHHHcCCCCC
Q 009897 416 GSSAPLYREGIHPQIPQLAILGYADSPSI----LRTTEMRSKCLAHFLAGNSNL 465 (523)
Q Consensus 416 ~~~~~ly~~~~~~~~p~l~~iG~~~~~~~----~~~ae~Qa~~~a~~l~g~~~l 465 (523)
......|+...-.+.||+++++....... ....+.+.++++..+.-....
T Consensus 363 ~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (443)
T COG2072 363 KDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRAELRITLLADAIAHGRTL 416 (443)
T ss_pred ccccceeccccccCCCceEEecCccCCcccchhHHhhhhhhhHHHHHHHhcccc
Confidence 11125677777788999999975543322 356777788877777655443
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.97 E-value=2.3e-31 Score=249.08 Aligned_cols=192 Identities=38% Similarity=0.651 Sum_probs=138.8
Q ss_pred EEECCChHHHHHHHHHHHCCCc-eEEEccCCCCCcccccccCcccccCCcCc---eeeCCCCCCC-------CCCCCCCC
Q 009897 34 AIIGAGVSGLLACKYTLENGFK-PIVFEARSGIGGVWSQTIESTKLQTPKSF---YQFSDFAWPN-------SVTETFPD 102 (523)
Q Consensus 34 ~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~ 102 (523)
+||||||+||++|.+|++.|++ ++|||+++.+||.|...++..++..|... +.+++++... .....+++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 99999999999999986666555554432 2222222110 01356789
Q ss_pred hhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCE
Q 009897 103 HNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDF 182 (523)
Q Consensus 103 ~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 182 (523)
++++.+|++++++++++ .++++++|+++++.+ ++|.|+++++. ++.||+
T Consensus 81 ~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~~~----------------------~~w~v~~~~~~-------~~~a~~ 129 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGL--EIRFNTRVESVRRDG----------------------DGWTVTTRDGR-------TIRADR 129 (203)
T ss_dssp HHHHHHHHHHHHHHTTG--GEETS--EEEEEEET----------------------TTEEEEETTS--------EEEEEE
T ss_pred HHHHHHHHHHHHhhcCc--ccccCCEEEEEEEec----------------------cEEEEEEEecc-------eeeeee
Confidence 99999999999999999 699999999999986 45999998875 889999
Q ss_pred EEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 183 VILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 183 vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
||+|||.+ +.|++|++| | ..+. ..+|+.++.+. ..+++|+|+|||+|.||+|+|..|++.++ +||+++|+
T Consensus 130 VVlAtG~~-~~p~~p~~~---g-~~~~-~~~h~~~~~~~-~~~~~k~V~VVG~G~SA~d~a~~l~~~g~---~V~~~~R~ 199 (203)
T PF13738_consen 130 VVLATGHY-SHPRIPDIP---G-SAFR-PIIHSADWRDP-EDFKGKRVVVVGGGNSAVDIAYALAKAGK---SVTLVTRS 199 (203)
T ss_dssp EEE---SS-CSB---S-T---T-GGCS-EEEEGGG-STT-GGCTTSEEEEE--SHHHHHHHHHHTTTCS---EEEEEESS
T ss_pred EEEeeecc-CCCCccccc---c-cccc-ceEehhhcCCh-hhcCCCcEEEEcChHHHHHHHHHHHhhCC---EEEEEecC
Confidence 99999998 589999998 6 2233 78999988776 56889999999999999999999999874 49999999
Q ss_pred ceeE
Q 009897 263 VHWM 266 (523)
Q Consensus 263 ~~~~ 266 (523)
|.|+
T Consensus 200 ~~~~ 203 (203)
T PF13738_consen 200 PIWY 203 (203)
T ss_dssp ----
T ss_pred CCCC
Confidence 9874
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.97 E-value=9.3e-29 Score=245.69 Aligned_cols=284 Identities=19% Similarity=0.262 Sum_probs=196.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
+||+|||||++||++|..|++.|++|+|||+.+ +||.|.... ....++.++ ......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~---------~~~~~~~~~-------~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT---------EVENYPGFP-------EGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc---------cccccCCCC-------CCCChHHHHHHH
Confidence 589999999999999999999999999999875 788765410 011111111 123456899999
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
+++++++++ .+++ ++|+++++.. +.|.|++.++. ++.||+||+|||.
T Consensus 64 ~~~~~~~gv--~~~~-~~v~~v~~~~----------------------~~~~v~~~~~~-------~~~~d~liiAtG~- 110 (300)
T TIGR01292 64 KEQAVKFGA--EIIY-EEVIKVDLSD----------------------RPFKVKTGDGK-------EYTAKAVIIATGA- 110 (300)
T ss_pred HHHHHHcCC--eEEE-EEEEEEEecC----------------------CeeEEEeCCCC-------EEEeCEEEECCCC-
Confidence 999999998 7777 8999998754 46888876554 7999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEecCc
Q 009897 191 SDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVPDY 270 (523)
Q Consensus 191 s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~ 270 (523)
.|+.|.+| |.+.|.+..+|.....+. ....+++|+|||+|.+|+|+|..|++.+. +|+++.|.+.+. ..
T Consensus 111 --~~~~~~i~---g~~~~~~~~~~~~~~~~~-~~~~~~~v~ViG~G~~~~e~a~~l~~~~~---~V~~v~~~~~~~-~~- 179 (300)
T TIGR01292 111 --SARKLGIP---GEDEFLGRGVSYCATCDG-PFFKNKEVAVVGGGDSAIEEALYLTRIAK---KVTLVHRRDKFR-AE- 179 (300)
T ss_pred --CcccCCCC---ChhhcCCccEEEeeecCh-hhcCCCEEEEECCChHHHHHHHHHHhhcC---EEEEEEeCcccC-cC-
Confidence 47777788 776666666665544433 44678999999999999999999998764 499999876421 00
Q ss_pred cCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecCcc
Q 009897 271 FLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRN 350 (523)
Q Consensus 271 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~ 350 (523)
..
T Consensus 180 ------------------------------------------------------------------------------~~ 181 (300)
T TIGR01292 180 ------------------------------------------------------------------------------KI 181 (300)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred hhhhccCC-CEEEEecC-ceEEecCc----EEEc---CC--ceeeeccEEEEecCCCCCccccccccchhhhhhhcCCCc
Q 009897 351 FYDRVQGG-GLSLMKSR-SFTFCKNG----LVID---GE--TTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGSSA 419 (523)
Q Consensus 351 ~~~~~~~g-~v~v~~~~-i~~~~~~~----v~l~---dG--~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~~~ 419 (523)
+.+.+++. +|+++.+. +.++++++ +++. +| .+ +++|.||+|||++++..+++.+ .. ++. ....
T Consensus 182 ~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~-i~~D~vi~a~G~~~~~~~l~~~-~~-~~~---~g~i 255 (300)
T TIGR01292 182 LLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEE-LKVDGVFIAIGHEPNTELLKGL-LE-LDE---GGYI 255 (300)
T ss_pred HHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEE-EEccEEEEeeCCCCChHHHHHh-he-ecC---CCcE
Confidence 11222232 56666553 56665442 4443 23 34 8999999999999987654322 10 110 0000
Q ss_pred ccccccccCCCCCeEEecccCC--CCchhhHHHHHHHHHHHHc
Q 009897 420 PLYREGIHPQIPQLAILGYADS--PSILRTTEMRSKCLAHFLA 460 (523)
Q Consensus 420 ~ly~~~~~~~~p~l~~iG~~~~--~~~~~~ae~Qa~~~a~~l~ 460 (523)
..... +.+++||||++|.+.. ...+..+..|++.+|..+.
T Consensus 256 ~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 256 VTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred EECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 11112 4568999999999875 3446788999998888765
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=2.1e-27 Score=238.24 Aligned_cols=295 Identities=19% Similarity=0.258 Sum_probs=199.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..+||+||||||+||+||..|.+.|+++++||+ ...||.+..... +.++|. .....+.+++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~~~------------~~~~~~----~~~~~~~~~~~~ 67 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTE------------VENWPG----DPNDLTGPLLME 67 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecCce------------ECCCCC----CCCCCCHHHHHH
Confidence 348999999999999999999999999999996 468887654211 111111 122345678899
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
++.++++.++. .++++ +|..|+... +.|+++...+ .+.||+||+|||
T Consensus 68 ~~~~~~~~~~~--~~~~~-~v~~v~~~~----------------------~~~~v~~~~~--------~~~~d~vilAtG 114 (321)
T PRK10262 68 RMHEHATKFET--EIIFD-HINKVDLQN----------------------RPFRLTGDSG--------EYTCDALIIATG 114 (321)
T ss_pred HHHHHHHHCCC--EEEee-EEEEEEecC----------------------CeEEEEecCC--------EEEECEEEECCC
Confidence 99999999887 56665 677777643 5577764322 689999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEec
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVP 268 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p 268 (523)
. .|+.|++| |.+.|.++.+|...+.+. ....+++|+|||+|.+|+|+|..|++.+.+ ||++.|.+.+ +
T Consensus 115 ~---~~~~~~i~---g~~~~~~~~v~~~~~~~~-~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~---Vtlv~~~~~~--~ 182 (321)
T PRK10262 115 A---SARYLGLP---SEEAFKGRGVSACATCDG-FFYRNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGF--R 182 (321)
T ss_pred C---CCCCCCCC---CHHHcCCCcEEEeecCCH-HHcCCCEEEEECCCHHHHHHHHHHHhhCCE---EEEEEECCcc--C
Confidence 5 47888888 877788888888776655 456799999999999999999999988654 9999997652 1
Q ss_pred CccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecC
Q 009897 269 DYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLP 348 (523)
Q Consensus 269 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~ 348 (523)
... .+.
T Consensus 183 ~~~--------------------------------------------------------------------------~~~ 188 (321)
T PRK10262 183 AEK--------------------------------------------------------------------------ILI 188 (321)
T ss_pred CCH--------------------------------------------------------------------------HHH
Confidence 100 001
Q ss_pred cchhhhccCCCEEEEecC-ceEEecC-----cEEEcCC-----ceeeeccEEEEecCCCCCccccccccchhhhhhhcCC
Q 009897 349 RNFYDRVQGGGLSLMKSR-SFTFCKN-----GLVIDGE-----TTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGS 417 (523)
Q Consensus 349 ~~~~~~~~~g~v~v~~~~-i~~~~~~-----~v~l~dG-----~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~ 417 (523)
..+.+.+++.+|+++.+. +.+++++ +|++.++ .+.+++|.||+|+|++|+..+.+. ....-+..+..+
T Consensus 189 ~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd 267 (321)
T PRK10262 189 KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQ 267 (321)
T ss_pred HHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEEC
Confidence 122345667788888765 7777665 3666543 123899999999999999875431 111001111111
Q ss_pred CcccccccccCCCCCeEEecccCCCC--chh----hHHHHHHHHHHHHcC
Q 009897 418 SAPLYREGIHPQIPQLAILGYADSPS--ILR----TTEMRSKCLAHFLAG 461 (523)
Q Consensus 418 ~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~----~ae~Qa~~~a~~l~g 461 (523)
. .+....+.++.|+||++|.+.... ... ..-..|..+.++|.+
T Consensus 268 ~-~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 268 S-GIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred C-CCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHh
Confidence 1 110012457899999999887432 122 333444555555544
No 8
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.95 E-value=2.9e-26 Score=243.81 Aligned_cols=282 Identities=17% Similarity=0.220 Sum_probs=195.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.+||+||||||+|++||.+|++.|++++|+++. +||+|...+. +..++ ...+....++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~------------~~~~~-----~~~~~~~~~l~~~ 271 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMG------------IENFI-----SVPETEGPKLAAA 271 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCc------------ccccC-----CCCCCCHHHHHHH
Confidence 489999999999999999999999999999863 8999864211 00011 1123466789999
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
++.+++++++ .++++++|.+++... +.|.|++.++. .+.||.||+|||.
T Consensus 272 l~~~~~~~gv--~i~~~~~V~~I~~~~----------------------~~~~V~~~~g~-------~i~a~~vViAtG~ 320 (517)
T PRK15317 272 LEEHVKEYDV--DIMNLQRASKLEPAA----------------------GLIEVELANGA-------VLKAKTVILATGA 320 (517)
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEecC----------------------CeEEEEECCCC-------EEEcCEEEECCCC
Confidence 9999999998 788999999998853 46888876664 7999999999996
Q ss_pred cCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEecC
Q 009897 190 YSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVPD 269 (523)
Q Consensus 190 ~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~ 269 (523)
. |+.|++| |.+.|.+..+|.....+. ..+.+|+|+|||+|.+|+|+|..|+..+.+ ||++.|.+... +.
T Consensus 321 ~---~r~~~ip---G~~~~~~~~v~~~~~~~~-~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~---Vtlv~~~~~l~-~~ 389 (517)
T PRK15317 321 R---WRNMNVP---GEDEYRNKGVAYCPHCDG-PLFKGKRVAVIGGGNSGVEAAIDLAGIVKH---VTVLEFAPELK-AD 389 (517)
T ss_pred C---cCCCCCC---CHHHhcCceEEEeeccCc-hhcCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEECcccc-cc
Confidence 4 6778888 877787777777654443 346799999999999999999999987754 99998876411 00
Q ss_pred ccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecCc
Q 009897 270 YFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPR 349 (523)
Q Consensus 270 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 349 (523)
+
T Consensus 390 ------------------------------------------~------------------------------------- 390 (517)
T PRK15317 390 ------------------------------------------Q------------------------------------- 390 (517)
T ss_pred ------------------------------------------H-------------------------------------
Confidence 0
Q ss_pred chhhhcc-CCCEEEEecC-ceEEecC-----cEEEcC---Cc-eeeeccEEEEecCCCCCccccccccchhhhhhhcCCC
Q 009897 350 NFYDRVQ-GGGLSLMKSR-SFTFCKN-----GLVIDG---ET-TPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGSS 418 (523)
Q Consensus 350 ~~~~~~~-~g~v~v~~~~-i~~~~~~-----~v~l~d---G~-~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~~ 418 (523)
.+.+.+. ..+|+++.+. +.++.++ ++++.+ |+ +.+++|.|++|+|++|+..+++.. .. +.. ..
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~-~~~----~g 464 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VE-LNR----RG 464 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-ee-eCC----CC
Confidence 0011122 2457777665 5666554 245543 32 238999999999999987654321 10 110 00
Q ss_pred cccccccccCCCCCeEEecccCCCC--chhhHHHHHHHHHH
Q 009897 419 APLYREGIHPQIPQLAILGYADSPS--ILRTTEMRSKCLAH 457 (523)
Q Consensus 419 ~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~ae~Qa~~~a~ 457 (523)
.......+.++.|+||++|.+.... .+..+..++..+|.
T Consensus 465 ~i~vd~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~ 505 (517)
T PRK15317 465 EIIVDARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAAL 505 (517)
T ss_pred cEEECcCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHH
Confidence 1111123446899999999886542 24455555554443
No 9
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.95 E-value=3.5e-26 Score=240.76 Aligned_cols=307 Identities=13% Similarity=0.165 Sum_probs=190.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCce-------eeCCCCCCCCCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFY-------QFSDFAWPNSVTET 99 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 99 (523)
..+||+||||||+|+++|..|.+.|.+|+|||+.+.+||+|.+ +.|+..+......+ .|..++.+ .
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~-----~ 78 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK-----L 78 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc-----C
Confidence 3589999999999999999999999999999998899999976 56655432211111 11111111 1
Q ss_pred CCChhHHHHHHH-----------HHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeec
Q 009897 100 FPDHNKVMEYLQ-----------AYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEA 168 (523)
Q Consensus 100 ~~~~~~~~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 168 (523)
..+..++.++.+ ...++.++ .+..+ ++..++. +.+.|...++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~~------------------------~~~~v~~~~g 131 (461)
T PRK05249 79 RITFADLLARADHVINKQVEVRRGQYERNRV--DLIQG-RARFVDP------------------------HTVEVECPDG 131 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEecC------------------------CEEEEEeCCC
Confidence 223444444433 33344444 34433 2322221 3355654433
Q ss_pred ccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHH
Q 009897 169 RNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVAN 248 (523)
Q Consensus 169 ~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~ 248 (523)
+..++.||+||+|||+ .|..|+++ +.+. ..++++.+.... ...+++|+|||+|.+|+|+|..++.
T Consensus 132 -----~~~~~~~d~lviATGs---~p~~p~~~---~~~~--~~v~~~~~~~~~--~~~~~~v~IiGgG~~g~E~A~~l~~ 196 (461)
T PRK05249 132 -----EVETLTADKIVIATGS---RPYRPPDV---DFDH--PRIYDSDSILSL--DHLPRSLIIYGAGVIGCEYASIFAA 196 (461)
T ss_pred -----ceEEEEcCEEEEcCCC---CCCCCCCC---CCCC--CeEEcHHHhhch--hhcCCeEEEECCCHHHHHHHHHHHH
Confidence 1236899999999994 57777655 4221 124444333332 2348999999999999999999999
Q ss_pred hcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCC
Q 009897 249 RNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYN 328 (523)
Q Consensus 249 ~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (523)
.+.+ ||++.|.+. ++|..+
T Consensus 197 ~g~~---Vtli~~~~~-~l~~~d--------------------------------------------------------- 215 (461)
T PRK05249 197 LGVK---VTLINTRDR-LLSFLD--------------------------------------------------------- 215 (461)
T ss_pred cCCe---EEEEecCCC-cCCcCC---------------------------------------------------------
Confidence 8754 999999775 333221
Q ss_pred CCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEe--cCc--EEEcCCceeeeccEEEEecCCCCCccccc
Q 009897 329 MIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFC--KNG--LVIDGETTPLVTDIVIFATGYKSDEKLKN 403 (523)
Q Consensus 329 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~--~~~--v~l~dG~~~~~~D~VI~ATG~~~~~~l~~ 403 (523)
+.+.+.+.+.+++.+|+++.+. +.+++ +++ +++.+|++ +++|.||+|+|++|+..++.
T Consensus 216 ----------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~l~ 278 (461)
T PRK05249 216 ----------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKK-IKADCLLYANGRTGNTDGLN 278 (461)
T ss_pred ----------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCE-EEeCEEEEeecCCccccCCC
Confidence 0011122234445567777664 66665 333 45568887 99999999999999976432
Q ss_pred cccchhhhhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCCC
Q 009897 404 IFKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 404 ~~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
+.... +. ........-...+.++.||||++|.+.. ....+.|..|++.+|..+.|..
T Consensus 279 l~~~g-~~--~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 336 (461)
T PRK05249 279 LENAG-LE--ADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEA 336 (461)
T ss_pred chhhC-cE--ecCCCcEeeCCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 11000 00 0000001111234467899999998764 3346789999999999998763
No 10
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.95 E-value=1.7e-26 Score=236.65 Aligned_cols=315 Identities=17% Similarity=0.212 Sum_probs=200.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceeeC-----CCCCCCCCCCCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQFS-----DFAWPNSVTETF 100 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 100 (523)
++++|++|||+||+|..||..+++.|.++.++|+...+||+|.+ +.|+..+......+... .+.+... ..-
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~--~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE--VPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC--CCC
Confidence 35699999999999999999999999999999998899999998 88888775544433111 1111110 112
Q ss_pred CChhHHHHHHHHHHHHhCCCCceEecc-EEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEE
Q 009897 101 PDHNKVMEYLQAYAAHFNLFPSIKFDT-KVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQ 179 (523)
Q Consensus 101 ~~~~~~~~yl~~~~~~~~l~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 179 (523)
.+..++.+..+...+...-...-.+.. .|+-+.... .|. +..+|.+... ..++++
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a-----------------~f~--~~~~v~V~~~-----~~~~~~ 135 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA-----------------RFV--DPHTVEVTGE-----DKETIT 135 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE-----------------EEC--CCCEEEEcCC-----CceEEE
Confidence 344455555444333221100000100 222222111 000 1245555542 123899
Q ss_pred eCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEE
Q 009897 180 VDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLL 259 (523)
Q Consensus 180 ~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~ 259 (523)
+|++||||| +.|..|++| +++.. .++.+.+..... .-+++++|||+|.+|+|+|..++..+.+ ||++
T Consensus 136 a~~iiIATG---S~p~~~~~~---~~~~~--~~~~s~~~l~~~--~lP~~lvIiGgG~IGlE~a~~~~~LG~~---VTii 202 (454)
T COG1249 136 ADNIIIATG---SRPRIPPGP---GIDGA--RILDSSDALFLL--ELPKSLVIVGGGYIGLEFASVFAALGSK---VTVV 202 (454)
T ss_pred eCEEEEcCC---CCCcCCCCC---CCCCC--eEEechhhcccc--cCCCEEEEECCCHHHHHHHHHHHHcCCc---EEEE
Confidence 999999999 458888877 54432 244444433221 3489999999999999999999999875 9999
Q ss_pred EeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccc
Q 009897 260 FKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQI 339 (523)
Q Consensus 260 ~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 339 (523)
.|.+. ++|..+
T Consensus 203 e~~~~-iLp~~D-------------------------------------------------------------------- 213 (454)
T COG1249 203 ERGDR-ILPGED-------------------------------------------------------------------- 213 (454)
T ss_pred ecCCC-CCCcCC--------------------------------------------------------------------
Confidence 99887 555543
Q ss_pred cCcceeecCcchhhhccCCCEEEEecC-ceEEecC----cEEEcCCce-eeeccEEEEecCCCCCcccccc--ccchhhh
Q 009897 340 SSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN----GLVIDGETT-PLVTDIVIFATGYKSDEKLKNI--FKSTYFQ 411 (523)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~----~v~l~dG~~-~~~~D~VI~ATG~~~~~~l~~~--~~~~~l~ 411 (523)
+.+++.+.+.++++.++++.+. +.+++.+ .+.+++|.. .+++|.|++|||.+|+..-+.+ .+...-+
T Consensus 214 -----~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~ 288 (454)
T COG1249 214 -----PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDD 288 (454)
T ss_pred -----HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECC
Confidence 0122333455666677787776 5555443 266777762 2899999999999999762221 1111000
Q ss_pred -hhhcCCCcccccccccCCCCCeEEecccC-CCCchhhHHHHHHHHHHHHcC
Q 009897 412 -KQITGSSAPLYREGIHPQIPQLAILGYAD-SPSILRTTEMRSKCLAHFLAG 461 (523)
Q Consensus 412 -~~~~~~~~~ly~~~~~~~~p~l~~iG~~~-~~~~~~~ae~Qa~~~a~~l~g 461 (523)
..+.. . ..+.++.||||++|.+. .....+.+..|++.+|..+.|
T Consensus 289 rg~I~V---D---~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 289 RGFIKV---D---DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred CCCEEe---C---CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 01111 1 34456799999999984 444678999999999999987
No 11
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.95 E-value=3.4e-26 Score=234.52 Aligned_cols=286 Identities=20% Similarity=0.241 Sum_probs=185.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKV 106 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (523)
|+++|+|||||++|+.+|..|++. ..+|+|+++++.. .|.. ..++.. .......+++
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~------~y~~--------------~~l~~~-~~~~~~~~~~ 59 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD------EYNK--------------PDLSHV-FSQGQRADDL 59 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC------CcCc--------------CcCcHH-HhCCCCHHHh
Confidence 457999999999999999999985 4589999987643 0100 000000 0011122344
Q ss_pred HH-HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEE
Q 009897 107 ME-YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVIL 185 (523)
Q Consensus 107 ~~-yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVl 185 (523)
.. ..+++++++++ .++++++|++++... +.|++. +. .+.||+||+
T Consensus 60 ~~~~~~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~-~~-------~~~yd~LVl 105 (377)
T PRK04965 60 TRQSAGEFAEQFNL--RLFPHTWVTDIDAEA------------------------QVVKSQ-GN-------QWQYDKLVL 105 (377)
T ss_pred hcCCHHHHHHhCCC--EEECCCEEEEEECCC------------------------CEEEEC-Ce-------EEeCCEEEE
Confidence 33 35667788888 788899999998754 456643 32 789999999
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCch----hhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEe
Q 009897 186 CIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLA----AELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFK 261 (523)
Q Consensus 186 AtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~----~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r 261 (523)
|||+ .|..|++| |.+. +++.....+. .....+++|+|||+|.+|+|+|..|++.+. +|+++.+
T Consensus 106 ATG~---~~~~p~i~---G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~ 172 (377)
T PRK04965 106 ATGA---SAFVPPIP---GREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDN 172 (377)
T ss_pred CCCC---CCCCCCCC---CCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEec
Confidence 9995 47888888 7543 2322221111 012357999999999999999999998765 4999998
Q ss_pred eceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccC
Q 009897 262 TVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISS 341 (523)
Q Consensus 262 ~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 341 (523)
.+.. ++... . .
T Consensus 173 ~~~~-l~~~~--~---------------------------------~--------------------------------- 183 (377)
T PRK04965 173 AASL-LASLM--P---------------------------------P--------------------------------- 183 (377)
T ss_pred CCcc-cchhC--C---------------------------------H---------------------------------
Confidence 7652 22110 0 0
Q ss_pred cceeecCcchhhhccCCCEEEEecC-ceEEecC----cEEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhhcC
Q 009897 342 CMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN----GLVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITG 416 (523)
Q Consensus 342 ~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~----~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~ 416 (523)
.....+.+.+++.+|+++.+. +.+++.+ .+++.+|++ +++|.||+|+|++++..+.+..+...-.. +.
T Consensus 184 ----~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vI~a~G~~p~~~l~~~~gl~~~~g-i~- 256 (377)
T PRK04965 184 ----EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRS-IEVDAVIAAAGLRPNTALARRAGLAVNRG-IV- 256 (377)
T ss_pred ----HHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcE-EECCEEEECcCCCcchHHHHHCCCCcCCC-EE-
Confidence 001112233444567776654 6666643 267789988 99999999999999876543322221111 11
Q ss_pred CCcccccccccCCCCCeEEecccCCC-----CchhhHHHHHHHHHHHHcCCC
Q 009897 417 SSAPLYREGIHPQIPQLAILGYADSP-----SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 417 ~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
-...+.++.||||++|.+... ..+..+..|++++|+.|.|..
T Consensus 257 -----vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 257 -----VDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred -----ECCCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 112344578999999987532 134558899999999999864
No 12
>PLN02507 glutathione reductase
Probab=99.95 E-value=5.2e-26 Score=240.00 Aligned_cols=306 Identities=19% Similarity=0.281 Sum_probs=191.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEcc---------CCCCCccccc--ccCcccccCCcCcee----eCCCCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEA---------RSGIGGVWSQ--TIESTKLQTPKSFYQ----FSDFAW 92 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~---------~~~~GG~w~~--~~~~~~~~~~~~~~~----~~~~~~ 92 (523)
+..+||+||||||+|+.+|..+.+.|.+|+|+|+ ...+||+|.+ ++|+..+......+. ...+.+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 3458999999999999999999999999999996 3579999987 788776633322211 011111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHh-----------CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCe
Q 009897 93 PNSVTETFPDHNKVMEYLQAYAAHF-----------NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKW 161 (523)
Q Consensus 93 ~~~~~~~~~~~~~~~~yl~~~~~~~-----------~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
... ...-.+..++.++.....+++ ++ .+.. .++..++. ..+
T Consensus 103 ~~~-~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~i~-g~a~~vd~------------------------~~v 154 (499)
T PLN02507 103 EIN-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV--KLYE-GEGKIVGP------------------------NEV 154 (499)
T ss_pred ccC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-EEEEEecC------------------------CEE
Confidence 100 011123444444443333322 22 2222 23333332 346
Q ss_pred EEEEeecccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHH
Q 009897 162 NVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVD 241 (523)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d 241 (523)
.|+..+++ ..++.||+||||||+ .|..|.+| |.+. ..++.+.... . ..+++|+|||+|.+|+|
T Consensus 155 ~V~~~~g~-----~~~~~~d~LIIATGs---~p~~p~ip---G~~~----~~~~~~~~~l-~-~~~k~vvVIGgG~ig~E 217 (499)
T PLN02507 155 EVTQLDGT-----KLRYTAKHILIATGS---RAQRPNIP---GKEL----AITSDEALSL-E-ELPKRAVVLGGGYIAVE 217 (499)
T ss_pred EEEeCCCc-----EEEEEcCEEEEecCC---CCCCCCCC---Cccc----eechHHhhhh-h-hcCCeEEEECCcHHHHH
Confidence 66655442 236899999999995 57888888 6542 1222222222 1 23789999999999999
Q ss_pred HHHHHHHhcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhc
Q 009897 242 VAAEVANRNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWT 321 (523)
Q Consensus 242 ~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (523)
+|..++..+.+ ||++.|.+. +++..+ .
T Consensus 218 ~A~~l~~~G~~---Vtli~~~~~-~l~~~d-----------------------------------~-------------- 244 (499)
T PLN02507 218 FASIWRGMGAT---VDLFFRKEL-PLRGFD-----------------------------------D-------------- 244 (499)
T ss_pred HHHHHHHcCCe---EEEEEecCC-cCcccC-----------------------------------H--------------
Confidence 99999988754 999998765 222211 0
Q ss_pred CCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--Cc--EEEcCCceeeeccEEEEecCCC
Q 009897 322 FPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--NG--LVIDGETTPLVTDIVIFATGYK 396 (523)
Q Consensus 322 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~--v~l~dG~~~~~~D~VI~ATG~~ 396 (523)
.+...+.+.+++.+|+++.+. +.++++ ++ +.+.+|++ +++|.||+|+|++
T Consensus 245 ------------------------~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~-i~~D~vl~a~G~~ 299 (499)
T PLN02507 245 ------------------------EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEE-FVADVVLFATGRA 299 (499)
T ss_pred ------------------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcE-EEcCEEEEeecCC
Confidence 001112233445567777774 666653 33 55667887 9999999999999
Q ss_pred CCcccccc--ccchhh-hhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 397 SDEKLKNI--FKSTYF-QKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 397 ~~~~l~~~--~~~~~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
|+..++.+ .+...- +..+.. ..| +.++.||||++|.+... ...+.|..|++.++.++.|.
T Consensus 300 pn~~~l~l~~~gl~~~~~G~I~V---d~~---~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 300 PNTKRLNLEAVGVELDKAGAVKV---DEY---SRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CCCCCCCchhhCcEECCCCcEec---CCC---CcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 99864321 111100 011111 112 34689999999988753 34578999999999999875
No 13
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-25 Score=219.01 Aligned_cols=267 Identities=22% Similarity=0.297 Sum_probs=189.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCc-eEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFK-PIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
+.+||+||||||+||+||.++.+.+++ ++|+|+ ..+||...... ..-.|+.+ ..-.++.++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~---------~venypg~-------~~~~~g~~L~ 64 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT---------DVENYPGF-------PGGILGPELM 64 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce---------eecCCCCC-------ccCCchHHHH
Confidence 458999999999999999999999999 555555 55665433210 01111111 1224568889
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
+-++++++.++. .+.. .+|..++... ..|.|++.++ ++++++||+||
T Consensus 65 ~~~~~~a~~~~~--~~~~-~~v~~v~~~~----------------------~~F~v~t~~~--------~~~ak~vIiAt 111 (305)
T COG0492 65 EQMKEQAEKFGV--EIVE-DEVEKVELEG----------------------GPFKVKTDKG--------TYEAKAVIIAT 111 (305)
T ss_pred HHHHHHHhhcCe--EEEE-EEEEEEeecC----------------------ceEEEEECCC--------eEEEeEEEECc
Confidence 999999999987 5555 6777777653 2688888776 69999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEe
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMV 267 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~ 267 (523)
|.. ++.|.+| |.+.|.|+.+|.+..++. .+.+|+|+|||+|.||+|-|..|++.++. ||+++|++.+-.
T Consensus 112 G~~---~~~~~~~---~e~e~~g~gv~yc~~cdg--~~~~k~v~ViGgG~sAve~Al~L~~~a~~---Vtlv~r~~~~ra 180 (305)
T COG0492 112 GAG---ARKLGVP---GEEEFEGKGVSYCATCDG--FFKGKDVVVIGGGDSAVEEALYLSKIAKK---VTLVHRRDEFRA 180 (305)
T ss_pred CCc---ccCCCCC---cchhhcCCceEEeeecCc--cccCCeEEEEcCCHHHHHHHHHHHHhcCe---EEEEecCcccCc
Confidence 965 6777777 666899999999988876 68899999999999999999999999864 999999876211
Q ss_pred cCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeec
Q 009897 268 PDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVL 347 (523)
Q Consensus 268 p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~ 347 (523)
.
T Consensus 181 -~------------------------------------------------------------------------------ 181 (305)
T COG0492 181 -E------------------------------------------------------------------------------ 181 (305)
T ss_pred -C------------------------------------------------------------------------------
Confidence 1
Q ss_pred Ccchhhhcc-CCCEEEEecC-ceEEec---CcEEEcCC---ceeeeccEEEEecCCCCCccccccccchhhhhhhcCCCc
Q 009897 348 PRNFYDRVQ-GGGLSLMKSR-SFTFCK---NGLVIDGE---TTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGSSA 419 (523)
Q Consensus 348 ~~~~~~~~~-~g~v~v~~~~-i~~~~~---~~v~l~dG---~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~~~ 419 (523)
+.+.+.++ ..+|+++.+. +.++.+ .+|++.+. +..+.+|-|+.+.|+.|+..+..-+....-...+..+
T Consensus 182 -~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~-- 258 (305)
T COG0492 182 -EILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVD-- 258 (305)
T ss_pred -HHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcC--
Confidence 01112222 2367887774 788877 46788763 2338899999999999997654322210001112221
Q ss_pred ccccccccCCCCCeEEecccCCC
Q 009897 420 PLYREGIHPQIPQLAILGYADSP 442 (523)
Q Consensus 420 ~ly~~~~~~~~p~l~~iG~~~~~ 442 (523)
..+.+++|+||++|.+...
T Consensus 259 ----~~~~TsvpGifAaGDv~~~ 277 (305)
T COG0492 259 ----EEMETSVPGIFAAGDVADK 277 (305)
T ss_pred ----CCcccCCCCEEEeEeeccC
Confidence 2277899999999987654
No 14
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.94 E-value=6.2e-26 Score=237.15 Aligned_cols=300 Identities=17% Similarity=0.236 Sum_probs=183.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee----eCCCCCCCCCCCCCCCh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ----FSDFAWPNSVTETFPDH 103 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 103 (523)
.+||+||||||+|++||..|++.|.+|+|+|+. .+||+|.+ +.|+..+......+. ...+.++.. .....+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQN-LENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccC-CcCccCH
Confidence 489999999999999999999999999999994 69999976 677654322211111 111111100 0001223
Q ss_pred hHHHHHH-----------HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 104 NKVMEYL-----------QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 104 ~~~~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
.++.++. ....++.++ .+..++.+. .. ..+|.+. +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~~----~~-----------------------~~~v~v~-~~--- 126 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHARF----TK-----------------------DGTVEVN-GR--- 126 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE----cc-----------------------CCEEEEC-CE---
Confidence 3333332 223333344 455544321 11 1245542 32
Q ss_pred cceeEEEeCEEEEeeeecCCCCCCC-CCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcC
Q 009897 173 SATEAYQVDFVILCIGRYSDLPNTP-DFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNG 251 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~~p-~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 251 (523)
.+.||+||+|||+ .|+.| ++| |.+. .+.+.++... . ..+++|+|||+|.+|+|+|..++..+.
T Consensus 127 ----~~~~d~vIiAtGs---~p~~p~~i~---g~~~----~~~~~~~~~~-~-~~~~~vvIIGgG~iG~E~A~~l~~~g~ 190 (450)
T TIGR01421 127 ----DYTAPHILIATGG---KPSFPENIP---GAEL----GTDSDGFFAL-E-ELPKRVVIVGAGYIAVELAGVLHGLGS 190 (450)
T ss_pred ----EEEeCEEEEecCC---CCCCCCCCC---CCce----eEcHHHhhCc-c-ccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 6899999999994 57888 788 6542 1222222222 1 237899999999999999999999875
Q ss_pred CccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCC
Q 009897 252 VRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIP 331 (523)
Q Consensus 252 ~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 331 (523)
+ ||++.|.+. +++..+ .
T Consensus 191 ~---Vtli~~~~~-il~~~d-----------------------------------~------------------------ 207 (450)
T TIGR01421 191 E---THLVIRHER-VLRSFD-----------------------------------S------------------------ 207 (450)
T ss_pred c---EEEEecCCC-CCcccC-----------------------------------H------------------------
Confidence 4 999999765 223221 0
Q ss_pred CCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC-----cEEEcCCceeeeccEEEEecCCCCCcccccc-
Q 009897 332 GHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN-----GLVIDGETTPLVTDIVIFATGYKSDEKLKNI- 404 (523)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~-----~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~- 404 (523)
.+.+.+.+.+++.+|+++.+. +++++++ .+++++|++.+++|.||+|+|++|+..++.+
T Consensus 208 --------------~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~ 273 (450)
T TIGR01421 208 --------------MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLE 273 (450)
T ss_pred --------------HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCcc
Confidence 011112234445567777764 6666532 2567778333999999999999999864321
Q ss_pred -ccchhhhhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCC
Q 009897 405 -FKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 405 -~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~ 462 (523)
.+.. ++. .........+.++.||||++|.+.. ....+.|..|++.+|..+.|.
T Consensus 274 ~~g~~-~~~----~G~i~vd~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 274 NVGIK-LNE----KGQIIVDEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred ccCcE-ECC----CCcEEeCCCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 1111 110 0001111224468899999998664 335688999999999999853
No 15
>PRK06116 glutathione reductase; Validated
Probab=99.94 E-value=9.1e-26 Score=236.70 Aligned_cols=297 Identities=18% Similarity=0.251 Sum_probs=185.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee-e----CCCCCCCCCCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ-F----SDFAWPNSVTETFPD 102 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 102 (523)
.+||+||||||+|++||..|++.|.+|+|+|+. .+||+|.+ +.|+..+........ + ..+.+... .....
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT--ENKFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC--CCCcC
Confidence 489999999999999999999999999999985 89999876 666653322111110 0 00111100 00112
Q ss_pred hhHHHHHH-----------HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccC
Q 009897 103 HNKVMEYL-----------QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNV 171 (523)
Q Consensus 103 ~~~~~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 171 (523)
...+.++. +...++.++ .+..+ ++..++. .+|++ ++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~v~~--------------------------~~v~~-~g~-- 128 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEG-FARFVDA--------------------------HTVEV-NGE-- 128 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC--------------------------CEEEE-CCE--
Confidence 23333332 222333444 44443 3333321 35665 333
Q ss_pred CcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcC
Q 009897 172 SSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNG 251 (523)
Q Consensus 172 ~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 251 (523)
.+.||+||+|||+ .|+.|++| |.+. ++++...... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 129 -----~~~~d~lViATGs---~p~~p~i~---g~~~----~~~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~ 191 (450)
T PRK06116 129 -----RYTADHILIATGG---RPSIPDIP---GAEY----GITSDGFFAL--EELPKRVAVVGAGYIAVEFAGVLNGLGS 191 (450)
T ss_pred -----EEEeCEEEEecCC---CCCCCCCC---Ccce----eEchhHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 7999999999994 57888888 6542 3444333322 1237899999999999999999998875
Q ss_pred CccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCC
Q 009897 252 VRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIP 331 (523)
Q Consensus 252 ~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 331 (523)
+ ||++.|.+. +++..+
T Consensus 192 ~---Vtlv~~~~~-~l~~~~------------------------------------------------------------ 207 (450)
T PRK06116 192 E---THLFVRGDA-PLRGFD------------------------------------------------------------ 207 (450)
T ss_pred e---EEEEecCCC-CccccC------------------------------------------------------------
Confidence 4 999998765 222211
Q ss_pred CCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--Cc---EEEcCCceeeeccEEEEecCCCCCcccccc-
Q 009897 332 GHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--NG---LVIDGETTPLVTDIVIFATGYKSDEKLKNI- 404 (523)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~---v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~- 404 (523)
+.+...+.+.+++.+|+++.+. +.+++. ++ +.+.+|++ +++|.||+|+|++|+...+.+
T Consensus 208 -------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~-i~~D~Vv~a~G~~p~~~~l~l~ 273 (450)
T PRK06116 208 -------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGET-LTVDCLIWAIGREPNTDGLGLE 273 (450)
T ss_pred -------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcE-EEeCEEEEeeCCCcCCCCCCch
Confidence 0011122344555667777764 666653 22 56678888 999999999999999763221
Q ss_pred -ccchhh-hhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCC
Q 009897 405 -FKSTYF-QKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 405 -~~~~~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~ 462 (523)
.+...- +..+.. ..| +.++.||||++|.+.. ....+.|..|++.+|..|.|.
T Consensus 274 ~~g~~~~~~G~i~v---d~~---~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 274 NAGVKLNEKGYIIV---DEY---QNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred hcCceECCCCcEec---CCC---CCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 111100 011111 112 3468999999998764 334678999999999999874
No 16
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.94 E-value=1.3e-25 Score=238.48 Aligned_cols=285 Identities=16% Similarity=0.206 Sum_probs=192.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.+||+||||||+|++||..|++.|++|+|++. .+||++..... ...+.. .......++.++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~---------~~~~~~--------~~~~~~~~l~~~ 272 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG---------IENLIS--------VPYTTGSQLAAN 272 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC---------cccccc--------cCCCCHHHHHHH
Confidence 48999999999999999999999999999975 58998764210 001111 112356788899
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.++++++++ .++++++|.+++... +.+.|++.++. .+.||+||+|||.
T Consensus 273 l~~~l~~~gv--~i~~~~~V~~I~~~~----------------------~~~~v~~~~g~-------~i~~d~lIlAtGa 321 (515)
T TIGR03140 273 LEEHIKQYPI--DLMENQRAKKIETED----------------------GLIVVTLESGE-------VLKAKSVIVATGA 321 (515)
T ss_pred HHHHHHHhCC--eEEcCCEEEEEEecC----------------------CeEEEEECCCC-------EEEeCEEEECCCC
Confidence 9999999988 888999999998754 45888876654 7999999999995
Q ss_pred cCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEecC
Q 009897 190 YSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVPD 269 (523)
Q Consensus 190 ~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~ 269 (523)
. |+.|++| |.+.+.+..++.....+. ....+++|+|||+|.+|+|+|..|+..+.+ ||++.+.+... .
T Consensus 322 ~---~~~~~ip---G~~~~~~~~v~~~~~~~~-~~~~~k~VvViGgG~~g~E~A~~L~~~g~~---Vtli~~~~~l~-~- 389 (515)
T TIGR03140 322 R---WRKLGVP---GEKEYIGKGVAYCPHCDG-PFFKGKDVAVIGGGNSGIEAAIDLAGIVRH---VTVLEFADELK-A- 389 (515)
T ss_pred C---cCCCCCC---CHHHcCCCeEEEeeccCh-hhcCCCEEEEECCcHHHHHHHHHHHhcCcE---EEEEEeCCcCC-h-
Confidence 4 6777788 765565555555443332 345689999999999999999999987654 99998765310 0
Q ss_pred ccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecCc
Q 009897 270 YFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPR 349 (523)
Q Consensus 270 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 349 (523)
.+
T Consensus 390 -----------------------------------------~~------------------------------------- 391 (515)
T TIGR03140 390 -----------------------------------------DK------------------------------------- 391 (515)
T ss_pred -----------------------------------------hH-------------------------------------
Confidence 00
Q ss_pred chhhhccC-CCEEEEecC-ceEEecC-----cEEEcCC---c-eeeeccEEEEecCCCCCccccccccchhhhhhhcCCC
Q 009897 350 NFYDRVQG-GGLSLMKSR-SFTFCKN-----GLVIDGE---T-TPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGSS 418 (523)
Q Consensus 350 ~~~~~~~~-g~v~v~~~~-i~~~~~~-----~v~l~dG---~-~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~~ 418 (523)
.+.+.+++ .+|+++.+. +.++.++ +|++.++ + +.+++|.||+|+|++|+..+++.. .. +.. ..
T Consensus 392 ~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~-~~~----~G 465 (515)
T TIGR03140 392 VLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VE-LNR----RG 465 (515)
T ss_pred HHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cc-cCC----CC
Confidence 01122222 356777664 6666544 2666542 2 238999999999999998754321 11 110 00
Q ss_pred cccccccccCCCCCeEEecccCCCC--chhhHHHHHHHHHHHHc
Q 009897 419 APLYREGIHPQIPQLAILGYADSPS--ILRTTEMRSKCLAHFLA 460 (523)
Q Consensus 419 ~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~ae~Qa~~~a~~l~ 460 (523)
.......+.++.|+||++|.+.... .+..|..|+..+|..+.
T Consensus 466 ~I~vd~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~ 509 (515)
T TIGR03140 466 EIVIDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred eEEECCCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHH
Confidence 1111122346899999999987542 24556666666555443
No 17
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=7.1e-26 Score=238.44 Aligned_cols=306 Identities=20% Similarity=0.259 Sum_probs=188.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceee----CCCCCCCCCCCCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQF----SDFAWPNSVTETFPD 102 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 102 (523)
..+||+||||||+|++||..|++.|.+|+|+|+.. +||+|.+ +.|+..+......+.+ ..+.+.. ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~--~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKA--ENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCccc--CCCccC
Confidence 35899999999999999999999999999999976 9999876 6776654433332221 1111111 112345
Q ss_pred hhHHHHHHHHHHH-----------HhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccC
Q 009897 103 HNKVMEYLQAYAA-----------HFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNV 171 (523)
Q Consensus 103 ~~~~~~yl~~~~~-----------~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 171 (523)
..++.+|.+.+++ +.++ .+..+ ++..++. ..+.|...++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~~------------------------~~~~v~~~~~~-- 130 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRG-EAKLVDP------------------------NTVRVMTEDGE-- 130 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC------------------------CEEEEecCCCc--
Confidence 5667777555443 3343 33333 3333221 22444432221
Q ss_pred CcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEE-ecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhc
Q 009897 172 SSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVL-HSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRN 250 (523)
Q Consensus 172 ~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~-h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~ 250 (523)
.++.||+||+|||+. |..| | |.+ ..+..+ ++.+.... ...+++|+|||+|.+|+|+|..+++.+
T Consensus 131 ----~~~~~d~lViAtGs~---p~~~--p---g~~-~~~~~v~~~~~~~~~--~~~~~~vvVvGgG~~g~E~A~~l~~~g 195 (462)
T PRK06416 131 ----QTYTAKNIILATGSR---PREL--P---GIE-IDGRVIWTSDEALNL--DEVPKSLVVIGGGYIGVEFASAYASLG 195 (462)
T ss_pred ----EEEEeCEEEEeCCCC---CCCC--C---CCC-CCCCeEEcchHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcC
Confidence 279999999999954 5543 3 443 223333 33332221 134789999999999999999999876
Q ss_pred CCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCC
Q 009897 251 GVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMI 330 (523)
Q Consensus 251 ~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 330 (523)
. +||++.|.+. ++|..+
T Consensus 196 ~---~Vtli~~~~~-~l~~~~----------------------------------------------------------- 212 (462)
T PRK06416 196 A---EVTIVEALPR-ILPGED----------------------------------------------------------- 212 (462)
T ss_pred C---eEEEEEcCCC-cCCcCC-----------------------------------------------------------
Confidence 5 4999999775 333321
Q ss_pred CCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC--c--EEEcCC---ceeeeccEEEEecCCCCCcccc
Q 009897 331 PGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--G--LVIDGE---TTPLVTDIVIFATGYKSDEKLK 402 (523)
Q Consensus 331 p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~--v~l~dG---~~~~~~D~VI~ATG~~~~~~l~ 402 (523)
+.+.+.+.+.+++.+|+++.+. +.+++++ + +.+.+| ++ +++|.||+|+|++|+..++
T Consensus 213 --------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~-i~~D~vi~a~G~~p~~~~l 277 (462)
T PRK06416 213 --------------KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEET-LEADYVLVAVGRRPNTENL 277 (462)
T ss_pred --------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEE-EEeCEEEEeeCCccCCCCC
Confidence 0011112233445567777774 6777643 3 344555 55 8999999999999997653
Q ss_pred ccccchhhhhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCCC
Q 009897 403 NIFKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 403 ~~~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
.+.... +. + +.........+.++.|+||++|.+.. ......+..|++.+|..+.|..
T Consensus 278 ~l~~~g-l~--~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 278 GLEELG-VK--T-DRGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred CchhcC-Ce--e-cCCEEeECCCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 210000 00 0 01111111223468899999998864 3356789999999999998864
No 18
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.94 E-value=5.2e-26 Score=237.21 Aligned_cols=289 Identities=15% Similarity=0.150 Sum_probs=185.3
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
++|+|||||++|+.||.+|++. +.+|+|+|+++.++ +.. ...|+-. ........+...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~----------------~~lp~~~--~~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FAN----------------CALPYYI--GEVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--ccc----------------CCcchhh--cCccCCHHHccc
Confidence 3799999999999999999986 57899999987652 110 0011100 011112222222
Q ss_pred H-HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 109 Y-LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 109 y-l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
+ .+.+.++.++ .++++++|++|+... ..|.+.++. +++...+.||+||+||
T Consensus 62 ~~~~~~~~~~~i--~v~~~~~V~~Id~~~------------------------~~v~~~~~~--~~~~~~~~yd~lviAt 113 (438)
T PRK13512 62 YTPEKFYDRKQI--TVKTYHEVIAINDER------------------------QTVTVLNRK--TNEQFEESYDKLILSP 113 (438)
T ss_pred CCHHHHHHhCCC--EEEeCCEEEEEECCC------------------------CEEEEEECC--CCcEEeeecCEEEECC
Confidence 2 2344566677 788899999998764 345555442 1223357899999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCchh------hhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEe
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAA------ELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFK 261 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~------~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r 261 (523)
|+ .|+.|+++ +.. ++......+.. ....+++|+|||+|.+|+|+|..+++.+.+ ||++.+
T Consensus 114 Gs---~~~~~~~~---~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~ 179 (438)
T PRK13512 114 GA---SANSLGFE---SDI-----TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLH---PTLIHR 179 (438)
T ss_pred CC---CCCCCCCC---CCC-----eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCc---EEEEec
Confidence 95 46766554 221 22222111110 112478999999999999999999988754 999999
Q ss_pred eceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccC
Q 009897 262 TVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISS 341 (523)
Q Consensus 262 ~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 341 (523)
.+. +++..+
T Consensus 180 ~~~-l~~~~d---------------------------------------------------------------------- 188 (438)
T PRK13512 180 SDK-INKLMD---------------------------------------------------------------------- 188 (438)
T ss_pred ccc-cchhcC----------------------------------------------------------------------
Confidence 765 222211
Q ss_pred cceeecCcchhhhccCCCEEEEecC-ceEEecCcEEEcCCceeeeccEEEEecCCCCCccccccccchhhh-hhhcCCCc
Q 009897 342 CMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNGLVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQ-KQITGSSA 419 (523)
Q Consensus 342 ~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~-~~~~~~~~ 419 (523)
+.+...+.+.+++.+|+++.+. +.++++..+++++|++ +++|.||+|+|++|+.++++-.+...-+ ..+..
T Consensus 189 ---~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~-~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~V--- 261 (438)
T PRK13512 189 ---ADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKV-EHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPV--- 261 (438)
T ss_pred ---HHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCE-EEeCEEEECcCCCcChHHHHhcCcccCCCCcEEE---
Confidence 0011122344556678888765 7888877899989988 9999999999999997654322111100 11111
Q ss_pred ccccccccCCCCCeEEecccCCC-----------CchhhHHHHHHHHHHHHcCC
Q 009897 420 PLYREGIHPQIPQLAILGYADSP-----------SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 420 ~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~ae~Qa~~~a~~l~g~ 462 (523)
..| +.++.||||++|.+... ...+.+..||+.++..+.|.
T Consensus 262 d~~---~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 262 NDK---FETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred CCC---cccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 122 33678999999987531 22456889999999999885
No 19
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.94 E-value=3.3e-26 Score=239.38 Aligned_cols=299 Identities=18% Similarity=0.280 Sum_probs=186.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCce----eeCCCCCCCCCCCCCCCh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFY----QFSDFAWPNSVTETFPDH 103 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 103 (523)
++||+||||||+|++||..+++.|.+|+|+|+ +.+||+|.+ +.|+..+....... .+..+.+... ..-.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG--KARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC--CCCcCH
Confidence 48999999999999999999999999999998 579999887 67776542221111 1111211100 001122
Q ss_pred h-----------HHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 104 N-----------KVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 104 ~-----------~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
. ++.++++...++.++ .+..+ ++..++.. ...|. .++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~v~~~------------------------~v~v~-~~g~--- 127 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGV--ELLEG-RARLVGPN------------------------TVEVL-QDGT--- 127 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEE-EEEEecCC------------------------EEEEe-cCCe---
Confidence 2 233344445555555 44443 55544432 23332 2232
Q ss_pred cceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCC
Q 009897 173 SATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGV 252 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 252 (523)
.+.||+||+|||+ .|..|++| |.+. .+.+.+.... ...+++|+|||+|.+|+|+|..++..+.+
T Consensus 128 ----~~~~d~lIiATGs---~p~~p~i~---G~~~----~~~~~~~~~l--~~~~~~vvVIGgG~~g~E~A~~l~~~G~~ 191 (446)
T TIGR01424 128 ----TYTAKKILIAVGG---RPQKPNLP---GHEL----GITSNEAFHL--PTLPKSILILGGGYIAVEFAGIWRGLGVQ 191 (446)
T ss_pred ----EEEcCEEEEecCC---cCCCCCCC---Cccc----eechHHhhcc--cccCCeEEEECCcHHHHHHHHHHHHcCCe
Confidence 7899999999994 57888888 6542 1222222211 12478999999999999999999987754
Q ss_pred ccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCC
Q 009897 253 RYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPG 332 (523)
Q Consensus 253 ~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 332 (523)
|+++.+.+. +++..+ .
T Consensus 192 ---Vtli~~~~~-~l~~~d-----------------------------------~------------------------- 207 (446)
T TIGR01424 192 ---VTLIYRGEL-ILRGFD-----------------------------------D------------------------- 207 (446)
T ss_pred ---EEEEEeCCC-CCcccC-----------------------------------H-------------------------
Confidence 999998765 222211 0
Q ss_pred CcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--Cc--EEEcCCceeeeccEEEEecCCCCCcccccc--c
Q 009897 333 HSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--NG--LVIDGETTPLVTDIVIFATGYKSDEKLKNI--F 405 (523)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~--v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~--~ 405 (523)
.+...+.+.+++.+|+++.+. +.+++. ++ +.+.+|++ +++|.||+|||++|+...+.+ .
T Consensus 208 -------------~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~viva~G~~pn~~~l~l~~~ 273 (446)
T TIGR01424 208 -------------DMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEE-IVADVVLFATGRSPNTKGLGLEAA 273 (446)
T ss_pred -------------HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcE-eecCEEEEeeCCCcCCCcCCcccc
Confidence 001112233445567777664 666653 23 55668887 999999999999998764221 1
Q ss_pred cchhh-hhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 406 KSTYF-QKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 406 ~~~~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+...- +..+.. . ..+.++.||||++|.+... ...+.|..|++.++.++.|.
T Consensus 274 g~~~~~~G~i~v---d---~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 274 GVELNDAGAIAV---D---EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred CeEECCCCcEEe---C---CCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 11100 011111 1 2234689999999988753 34578999999999998874
No 20
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.94 E-value=3.4e-26 Score=228.61 Aligned_cols=293 Identities=16% Similarity=0.208 Sum_probs=194.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC--CceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENG--FKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNK 105 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (523)
++.++|||||||++|+.+|+.|.+.. .+|+++|+++.. ..-|+-........+.++
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h----------------------l~~plL~eva~g~l~~~~ 58 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH----------------------LFTPLLYEVATGTLSESE 58 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc----------------------ccchhhhhhhcCCCChhh
Confidence 35689999999999999999999974 899999997643 111221111223334455
Q ss_pred HHHHHHHHHHHhCCCCceE-eccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEE
Q 009897 106 VMEYLQAYAAHFNLFPSIK-FDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVI 184 (523)
Q Consensus 106 ~~~yl~~~~~~~~l~~~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vV 184 (523)
+..-++..++..+ ++. ...+|++|+.+. .+|++.++. .+.||+||
T Consensus 59 i~~p~~~~~~~~~---~v~~~~~~V~~ID~~~------------------------k~V~~~~~~-------~i~YD~LV 104 (405)
T COG1252 59 IAIPLRALLRKSG---NVQFVQGEVTDIDRDA------------------------KKVTLADLG-------EISYDYLV 104 (405)
T ss_pred eeccHHHHhcccC---ceEEEEEEEEEEcccC------------------------CEEEeCCCc-------cccccEEE
Confidence 6666666666444 233 346899999875 678887744 79999999
Q ss_pred EeeeecCCCCCCCCCCCCCCCCCCCccEEecC-C-----------CCchhhhcCC----CEEEEEcCCCCHHHHHHHHHH
Q 009897 185 LCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSM-N-----------DDLAAELING----KRVTVIGFQKSAVDVAAEVAN 248 (523)
Q Consensus 185 lAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~-~-----------~~~~~~~~~~----k~V~VvG~G~sg~d~a~~l~~ 248 (523)
+|+|+ .++.+.+| |..++.-. +.+. + +... +.... -.|+|||+|++|+|+|.+|++
T Consensus 105 valGs---~~~~fgi~---G~~E~a~~-lks~edA~~ir~~l~~~fe~a-~~~~~~~~~lti~IvGgG~TGVElAgeL~~ 176 (405)
T COG1252 105 VALGS---ETNYFGIP---GAAEYAFG-LKTLEDALRLRRHLLEAFEKA-SQEEDDRALLTIVIVGGGPTGVELAGELAE 176 (405)
T ss_pred EecCC---cCCcCCCC---CHHHhCCC-CCCHHHHHHHHHHHHHHHHHh-hccccccceeEEEEECCChhHHHHHHHHHH
Confidence 99995 57887777 75543211 1111 0 0000 00111 279999999999999999998
Q ss_pred hcCC----------ccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHH
Q 009897 249 RNGV----------RYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCL 318 (523)
Q Consensus 249 ~~~~----------~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
.... .-+|+++.+.|. ++|...+
T Consensus 177 ~~~~l~~~~~~~~~~~~V~LVea~p~-ILp~~~~---------------------------------------------- 209 (405)
T COG1252 177 RLHRLLKKFRVDPSELRVILVEAGPR-ILPMFPP---------------------------------------------- 209 (405)
T ss_pred HHHHHhhhhcCCccccEEEEEccCch-hccCCCH----------------------------------------------
Confidence 7531 015888888876 5555420
Q ss_pred HhcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecCcEEEcCCceeeeccEEEEecCCCC
Q 009897 319 KWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNGLVIDGETTPLVTDIVIFATGYKS 397 (523)
Q Consensus 319 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~v~l~dG~~~~~~D~VI~ATG~~~ 397 (523)
.+++...+.+++-+|+++.+. |+++++++|++.+|.+.+++|+||||+|.++
T Consensus 210 ---------------------------~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 210 ---------------------------KLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred ---------------------------HHHHHHHHHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcC
Confidence 011112245666788999887 9999999999999883399999999999999
Q ss_pred Cccccccccchhh-hhhhcCCCcccccccccCCCCCeEEecccCCC-------CchhhHHHHHHHHHHHHcCCC
Q 009897 398 DEKLKNIFKSTYF-QKQITGSSAPLYREGIHPQIPQLAILGYADSP-------SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 398 ~~~l~~~~~~~~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-------~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
+..+.++.+.... ...+.. -.....+++||||++|.+... .+...|+.|++++|++|..++
T Consensus 263 ~~~~~~l~~~e~dr~Grl~V-----~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l 331 (405)
T COG1252 263 SPLLKDLSGLETDRRGRLVV-----NPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARL 331 (405)
T ss_pred ChhhhhcChhhhccCCCEEe-----CCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 8765543111100 011111 113445789999999976532 345789999999888875554
No 21
>PRK14694 putative mercuric reductase; Provisional
Probab=99.94 E-value=2.5e-25 Score=234.15 Aligned_cols=307 Identities=17% Similarity=0.216 Sum_probs=190.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceee-CCC----CCCCCCCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQF-SDF----AWPNSVTETFPD 102 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~ 102 (523)
.+||+||||||+|++||..|++.|.+|+|||+. .+||+|.+ +.|+..+......+.. ... .+.. ...-++
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~--~~~~~~ 82 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSA--QAPVVD 82 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCccc--CCCccC
Confidence 489999999999999999999999999999985 79999986 4454433221111110 011 1110 011134
Q ss_pred hhHHHHHHHHHHHHhC-------CC--CceE-eccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 103 HNKVMEYLQAYAAHFN-------LF--PSIK-FDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 103 ~~~~~~yl~~~~~~~~-------l~--~~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
..++.++.++..+.+. +. ..+. +..+|..++. ..|.|++.++.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~------------------------~~~~V~~~~g~--- 135 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE------------------------RTLTVTLNDGG--- 135 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecC------------------------CEEEEEecCCC---
Confidence 5566666555544331 10 0122 1224444432 35888876542
Q ss_pred cceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCC
Q 009897 173 SATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGV 252 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 252 (523)
.+++.||+||+|||+ .|..|++| |.+.. ..+++.+.... ...+++|+|||+|.+|+|+|..|++.+.+
T Consensus 136 --~~~~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~~~l--~~~~~~vvViG~G~~G~E~A~~l~~~g~~ 203 (468)
T PRK14694 136 --EQTVHFDRAFIGTGA---RPAEPPVP---GLAET--PYLTSTSALEL--DHIPERLLVIGASVVALELAQAFARLGSR 203 (468)
T ss_pred --eEEEECCEEEEeCCC---CCCCCCCC---CCCCC--ceEcchhhhch--hcCCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 237999999999994 58888888 76543 24444432221 12478999999999999999999998754
Q ss_pred ccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCC
Q 009897 253 RYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPG 332 (523)
Q Consensus 253 ~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 332 (523)
||++.+.. ++|..+
T Consensus 204 ---Vtlv~~~~--~l~~~~------------------------------------------------------------- 217 (468)
T PRK14694 204 ---VTVLARSR--VLSQED------------------------------------------------------------- 217 (468)
T ss_pred ---EEEEECCC--CCCCCC-------------------------------------------------------------
Confidence 99998632 223221
Q ss_pred CcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC--cEEE-cCCceeeeccEEEEecCCCCCcccccc--cc
Q 009897 333 HSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--GLVI-DGETTPLVTDIVIFATGYKSDEKLKNI--FK 406 (523)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~v~l-~dG~~~~~~D~VI~ATG~~~~~~l~~~--~~ 406 (523)
+.+.+.+.+.+++.+|+++.+. +.+++.+ .+.+ .++.+ +++|.||+|+|.+|+..++.. ++
T Consensus 218 ------------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G~~pn~~~l~l~~~g 284 (468)
T PRK14694 218 ------------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGT-LRAEQLLVATGRTPNTENLNLESIG 284 (468)
T ss_pred ------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCE-EEeCEEEEccCCCCCcCCCCchhcC
Confidence 0011122234455567777764 6666533 2332 24446 999999999999999865421 11
Q ss_pred chhhhhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCCC
Q 009897 407 STYFQKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 407 ~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
...-+..+.. ..| +.++.|+||++|.+.. ....+.+..|++.+|..+.|..
T Consensus 285 ~~~~~G~i~v---d~~---~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~ 336 (468)
T PRK14694 285 VETERGAIRI---DEH---LQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD 336 (468)
T ss_pred cccCCCeEee---CCC---cccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 1100111111 122 3458999999998864 3346788999999999998753
No 22
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=3.1e-25 Score=232.10 Aligned_cols=300 Identities=15% Similarity=0.157 Sum_probs=184.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC-CCCccccc--ccCcccccCCcCceeeCCCCCCCCCCCCCCChhH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS-GIGGVWSQ--TIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNK 105 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (523)
..+||+||||||+|++||..|++.|.+|+|+|+.+ .+||+|.. +.|+..+..+... ...| .......++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~----~~~~----~~~~~~~~~ 73 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ----HTDF----VRAIQRKNE 73 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhcc----CCCH----HHHHHHHHH
Confidence 35899999999999999999999999999999976 48999875 4554332111100 0000 000111123
Q ss_pred HHHHHHHH-----HHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEe
Q 009897 106 VMEYLQAY-----AAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQV 180 (523)
Q Consensus 106 ~~~yl~~~-----~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 180 (523)
+.++++.. .+..++ .+..+ ++..++. +.+.|...++. .++.|
T Consensus 74 ~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~~------------------------~~~~v~~~~g~------~~~~~ 120 (441)
T PRK08010 74 VVNFLRNKNFHNLADMPNI--DVIDG-QAEFINN------------------------HSLRVHRPEGN------LEIHG 120 (441)
T ss_pred HHHHHHHhHHHHHhhcCCc--EEEEE-EEEEecC------------------------CEEEEEeCCCe------EEEEe
Confidence 33333221 111122 22222 3333322 34566554431 25899
Q ss_pred CEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEE
Q 009897 181 DFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLF 260 (523)
Q Consensus 181 d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~ 260 (523)
|+||+|||+ .|..|++| |.+.+.+ ++++...... ...+++|+|||+|.+|+|+|..++..+.+ ||++.
T Consensus 121 d~lviATGs---~p~~p~i~---G~~~~~~-v~~~~~~~~~--~~~~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~ 188 (441)
T PRK08010 121 EKIFINTGA---QTVVPPIP---GITTTPG-VYDSTGLLNL--KELPGHLGILGGGYIGVEFASMFANFGSK---VTILE 188 (441)
T ss_pred CEEEEcCCC---cCCCCCCC---CccCCCC-EEChhHhhcc--cccCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEe
Confidence 999999995 57888888 7655443 4444433322 13478999999999999999999998754 99999
Q ss_pred eeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCccccccc
Q 009897 261 KTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQIS 340 (523)
Q Consensus 261 r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 340 (523)
|.+. ++|..+ +
T Consensus 189 ~~~~-~l~~~~-----------------------------------~--------------------------------- 199 (441)
T PRK08010 189 AASL-FLPRED-----------------------------------R--------------------------------- 199 (441)
T ss_pred cCCC-CCCCcC-----------------------------------H---------------------------------
Confidence 8764 334321 0
Q ss_pred CcceeecCcchhhhccCCCEEEEecC-ceEEecC--cEEEc-CCceeeeccEEEEecCCCCCccccccc--cchhh-hhh
Q 009897 341 SCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--GLVID-GETTPLVTDIVIFATGYKSDEKLKNIF--KSTYF-QKQ 413 (523)
Q Consensus 341 ~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~v~l~-dG~~~~~~D~VI~ATG~~~~~~l~~~~--~~~~l-~~~ 413 (523)
.+...+.+.+++.+|+++.+. +.+++.+ ++.+. ++.+ +++|.||+|+|.+|+..++... +...- +..
T Consensus 200 -----~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~-i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~ 273 (441)
T PRK08010 200 -----DIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ-LAVDALLIASGRQPATASLHPENAGIAVNERGA 273 (441)
T ss_pred -----HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCe-EEeCEEEEeecCCcCCCCcCchhcCcEECCCCc
Confidence 011112244555677877665 6676542 34433 2335 8999999999999997643211 11100 111
Q ss_pred hcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 414 ITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 414 ~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+.. ..| +.++.||||++|.+... ...+.+..|++.++..+.|+
T Consensus 274 i~v---d~~---~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 274 IVV---DKY---LHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred EEE---CCC---cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 111 112 34579999999988764 34578899999999999874
No 23
>PRK06370 mercuric reductase; Validated
Probab=99.93 E-value=4.1e-25 Score=232.46 Aligned_cols=301 Identities=13% Similarity=0.119 Sum_probs=183.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee----eCCCCCCCCCCCCCCCh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ----FSDFAWPNSVTETFPDH 103 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 103 (523)
.+||+||||||+|++||..|++.|.+|+|+|+. .+||+|.+ +.|+..+......+. ...+.++.. .....+.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 82 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVG-GPVSVDF 82 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccC-ccCccCH
Confidence 489999999999999999999999999999985 78999876 556543322111110 001111100 0012344
Q ss_pred hHHHHHHHHHHH-----------Hh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccC
Q 009897 104 NKVMEYLQAYAA-----------HF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNV 171 (523)
Q Consensus 104 ~~~~~yl~~~~~-----------~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 171 (523)
.++.++.+..++ +. ++ .+..++.+. . +..+|++. +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~----~-----------------------~~~~v~v~-~~-- 130 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF----E-----------------------SPNTVRVG-GE-- 130 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE----c-----------------------cCCEEEEC-cE--
Confidence 455544444333 22 33 344443321 1 12345552 22
Q ss_pred CcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcC
Q 009897 172 SSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNG 251 (523)
Q Consensus 172 ~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 251 (523)
++.||+||+|||+ .|..|++| |.+.. .++++.+..+. ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 131 -----~~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~~~~--~~~~~~vvVIGgG~~g~E~A~~l~~~G~ 195 (463)
T PRK06370 131 -----TLRAKRIFINTGA---RAAIPPIP---GLDEV--GYLTNETIFSL--DELPEHLVIIGGGYIGLEFAQMFRRFGS 195 (463)
T ss_pred -----EEEeCEEEEcCCC---CCCCCCCC---CCCcC--ceEcchHhhCc--cccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 6899999999994 58888888 75532 23444333322 1347999999999999999999999875
Q ss_pred CccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCC
Q 009897 252 VRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIP 331 (523)
Q Consensus 252 ~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 331 (523)
+ ||++.|.+. ++|..+ .
T Consensus 196 ~---Vtli~~~~~-~l~~~~-----------------------------------~------------------------ 212 (463)
T PRK06370 196 E---VTVIERGPR-LLPRED-----------------------------------E------------------------ 212 (463)
T ss_pred e---EEEEEcCCC-CCcccC-----------------------------------H------------------------
Confidence 4 999998765 333221 0
Q ss_pred CCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC--c--EEEc--C-CceeeeccEEEEecCCCCCcccc-
Q 009897 332 GHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--G--LVID--G-ETTPLVTDIVIFATGYKSDEKLK- 402 (523)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~--v~l~--d-G~~~~~~D~VI~ATG~~~~~~l~- 402 (523)
.+.+.+.+.+++.+|+++.+. +.+++++ + +.+. + +.+ +++|.||+|||++|+...+
T Consensus 213 --------------~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~Vi~A~G~~pn~~~l~ 277 (463)
T PRK06370 213 --------------DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPE-ITGSHILVAVGRVPNTDDLG 277 (463)
T ss_pred --------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEECcCCCcCCCCcC
Confidence 001112233445567777664 6666543 2 3332 3 345 9999999999999997621
Q ss_pred -ccccchhhhhhhcCCCcccccccccCCCCCeEEecccCCCC-chhhHHHHHHHHHHHHcCC
Q 009897 403 -NIFKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADSPS-ILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 403 -~~~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~ae~Qa~~~a~~l~g~ 462 (523)
+..+.. ++. .....-...+.++.||||++|.+.... ....+..|++.+|.++.+.
T Consensus 278 l~~~g~~-~~~----~G~i~vd~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 278 LEAAGVE-TDA----RGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred chhhCce-ECC----CCcEeECcCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 111111 110 000001122346889999999876543 3578999999999999875
No 24
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.93 E-value=1e-24 Score=233.31 Aligned_cols=173 Identities=21% Similarity=0.305 Sum_probs=132.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
+||+||||||+||+||..|++.|++|+|||+. .+||.+..... ...+| .....++.++.+++
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~------------i~~~p-----g~~~~~~~~l~~~l 66 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE------------VVNYP-----GILNTTGPELMQEM 66 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc------------cccCC-----CCcCCCHHHHHHHH
Confidence 89999999999999999999999999999995 68887754210 00111 01224567889999
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
++.++++++ .+ ++++|+.++... ..+.|.+.++ .+.+|+||+|||+
T Consensus 67 ~~~~~~~gv--~~-~~~~V~~i~~~~----------------------~~~~V~~~~g--------~~~a~~lVlATGa- 112 (555)
T TIGR03143 67 RQQAQDFGV--KF-LQAEVLDVDFDG----------------------DIKTIKTARG--------DYKTLAVLIATGA- 112 (555)
T ss_pred HHHHHHcCC--EE-eccEEEEEEecC----------------------CEEEEEecCC--------EEEEeEEEECCCC-
Confidence 999999987 45 467888888643 3466766443 6889999999995
Q ss_pred CCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 191 SDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 191 s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+.|++| |.+.+.+..+|.....+. ..+.+++|+|||+|.+|+|+|..|+..+. +||++.|.+.
T Consensus 113 --~p~~~~ip---G~~~~~~~~v~~~~~~~~-~~~~g~~VvVIGgG~~g~E~A~~L~~~g~---~Vtli~~~~~ 177 (555)
T TIGR03143 113 --SPRKLGFP---GEEEFTGRGVAYCATCDG-EFFTGMDVFVIGGGFAAAEEAVFLTRYAS---KVTVIVREPD 177 (555)
T ss_pred --ccCCCCCC---CHHHhCCceEEEEeecCh-hhcCCCEEEEECCCHHHHHHHHHHHccCC---EEEEEEeCCc
Confidence 47888888 776676666666544433 34679999999999999999999998765 4999999764
No 25
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.93 E-value=2.1e-25 Score=234.83 Aligned_cols=301 Identities=17% Similarity=0.198 Sum_probs=184.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceeeCC---CCCCCCCCCCCCChhH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQFSD---FAWPNSVTETFPDHNK 105 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 105 (523)
+||+||||||+|++||..|++.|.+|+|+|+.. +||+|.+ ++|+..+......+++.. +.... ....++..+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~--~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLA--ATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCccccc--CCCccCHHH
Confidence 689999999999999999999999999999865 9999987 677665433222222211 11100 011122233
Q ss_pred HHHHHH------------HHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCc
Q 009897 106 VMEYLQ------------AYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSS 173 (523)
Q Consensus 106 ~~~yl~------------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 173 (523)
+..+.+ ...+++++ .+..+ ++..+ +..+|.+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~~--------------------------~~~~v~v~~g~---- 124 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGV--DYLRG-RARFK--------------------------DPKTVKVDLGR---- 124 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCc--EEEEE-EEEEc--------------------------cCCEEEEcCCe----
Confidence 332222 23334444 33332 22211 12456664431
Q ss_pred ceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCc
Q 009897 174 ATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVR 253 (523)
Q Consensus 174 ~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 253 (523)
..+.||+||+|||+ .|..|++| |.+.+ .++++.+.... ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 125 --~~~~~~~lIiATGs---~p~~p~i~---G~~~~--~~~~~~~~~~~--~~~~~~vvIIGgG~~g~E~A~~l~~~g~~- 191 (463)
T TIGR02053 125 --EVRGAKRFLIATGA---RPAIPPIP---GLKEA--GYLTSEEALAL--DRIPESLAVIGGGAIGVELAQAFARLGSE- 191 (463)
T ss_pred --EEEEeCEEEEcCCC---CCCCCCCC---CcccC--ceECchhhhCc--ccCCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 25899999999994 58888888 76543 24444443322 12368999999999999999999998754
Q ss_pred cCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCC
Q 009897 254 YPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGH 333 (523)
Q Consensus 254 ~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 333 (523)
||++.|.+. ++|..+.
T Consensus 192 --Vtli~~~~~-~l~~~d~------------------------------------------------------------- 207 (463)
T TIGR02053 192 --VTILQRSDR-LLPREEP------------------------------------------------------------- 207 (463)
T ss_pred --EEEEEcCCc-CCCccCH-------------------------------------------------------------
Confidence 999999765 3333210
Q ss_pred cccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC--c--EEEc--CC-ceeeeccEEEEecCCCCCcc-c-cc
Q 009897 334 SFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--G--LVID--GE-TTPLVTDIVIFATGYKSDEK-L-KN 403 (523)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~--v~l~--dG-~~~~~~D~VI~ATG~~~~~~-l-~~ 403 (523)
.+...+.+.+++.+|+++.+. +.+++.+ . +.+. ++ .+ +++|.||+|+|++|+.. + ++
T Consensus 208 ------------~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~ViiA~G~~p~~~~l~l~ 274 (463)
T TIGR02053 208 ------------EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGE-VEADELLVATGRRPNTDGLGLE 274 (463)
T ss_pred ------------HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEEeECCCcCCCCCCcc
Confidence 001112233445567777765 6666533 2 3443 23 45 99999999999999876 2 11
Q ss_pred cccchhhhhhhcCCCcccccccccCCCCCeEEecccCCCC-chhhHHHHHHHHHHHHcCC
Q 009897 404 IFKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADSPS-ILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 404 ~~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~ae~Qa~~~a~~l~g~ 462 (523)
..+.. +.+ .....-...+.++.|+||++|.+.... ..+.|..|++.+|..+.+.
T Consensus 275 ~~g~~-~~~----~G~i~vd~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 275 KAGVK-LDE----RGGILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred ccCCE-ECC----CCcEeECCCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 11111 110 000001122446899999999876543 4578999999999999875
No 26
>PTZ00058 glutathione reductase; Provisional
Probab=99.93 E-value=6e-25 Score=232.88 Aligned_cols=316 Identities=14% Similarity=0.161 Sum_probs=187.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceee----CCCCCCCCCCCCCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQF----SDFAWPNSVTETFP 101 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 101 (523)
.+++||+|||||++|++||..+++.|.+|+|+|+. .+||+|.+ +.|+..+......... ..+.+.. ..-.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~---~~~~ 121 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT---QFSF 121 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc---cCcc
Confidence 46799999999999999999999999999999985 79999887 7777765544332221 0111110 0012
Q ss_pred ChhHHHHHHHHH-----------HHHhCCCCceEeccE-EEE-----EEeCC-CCCcccccccccCCCCCCCCCCCCeEE
Q 009897 102 DHNKVMEYLQAY-----------AAHFNLFPSIKFDTK-VTS-----IDRLV-PSDEDEHSWDLWGGTGKPFSSSGKWNV 163 (523)
Q Consensus 102 ~~~~~~~yl~~~-----------~~~~~l~~~i~~~~~-V~~-----v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 163 (523)
+...+.++..++ .++.++ .+..+.- +.+ |.+.. .++| . ....++..+|
T Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~G~a~f~~~~~v~v~~~~~~~~~-----------~-~~~~~~~~~v 187 (561)
T PTZ00058 122 NLPLLVERRDKYIRRLNDIYRQNLKKDNV--EYFEGKGSLLSENQVLIKKVSQVDGE-----------A-DESDDDEVTI 187 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EEEEEEEEEecCCEEEeecccccccc-----------c-ccccccccee
Confidence 223333333322 333343 3333221 111 10000 0000 0 0001122333
Q ss_pred E------EeecccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCC
Q 009897 164 T------VQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQK 237 (523)
Q Consensus 164 ~------~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~ 237 (523)
+ ..++. .+.||+||||||+ .|..|++| |.+ .++++.++... ..+++|+|||+|.
T Consensus 188 ~~~~~~~~~~g~-------~i~ad~lVIATGS---~P~~P~Ip---G~~----~v~ts~~~~~l---~~pk~VvIIGgG~ 247 (561)
T PTZ00058 188 VSAGVSQLDDGQ-------VIEGKNILIAVGN---KPIFPDVK---GKE----FTISSDDFFKI---KEAKRIGIAGSGY 247 (561)
T ss_pred eeccceecCCCc-------EEECCEEEEecCC---CCCCCCCC---Cce----eEEEHHHHhhc---cCCCEEEEECCcH
Confidence 2 12222 7999999999994 58888888 754 13444333321 2389999999999
Q ss_pred CHHHHHHHHHHhcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHH
Q 009897 238 SAVDVAAEVANRNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESC 317 (523)
Q Consensus 238 sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (523)
+|+|+|..++..+.+ ||++.|.+. ++|..+.
T Consensus 248 iGlE~A~~l~~~G~~---Vtli~~~~~-il~~~d~--------------------------------------------- 278 (561)
T PTZ00058 248 IAVELINVVNRLGAE---SYIFARGNR-LLRKFDE--------------------------------------------- 278 (561)
T ss_pred HHHHHHHHHHHcCCc---EEEEEeccc-ccccCCH---------------------------------------------
Confidence 999999999998765 999999765 3343220
Q ss_pred HHhcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC---c--EEEcCCceeeeccEEEE
Q 009897 318 LKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN---G--LVIDGETTPLVTDIVIF 391 (523)
Q Consensus 318 ~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~---~--v~l~dG~~~~~~D~VI~ 391 (523)
.+.+.+.+.+++.+|+++.+. +.+++++ + +.+.++.+.+++|.||+
T Consensus 279 ----------------------------~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~Vlv 330 (561)
T PTZ00058 279 ----------------------------TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIY 330 (561)
T ss_pred ----------------------------HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEE
Confidence 011122234555667777665 6666542 2 33445443399999999
Q ss_pred ecCCCCCccccccccchhhhhhhcCCCcccccccccCCCCCeEEecccCC------------------------------
Q 009897 392 ATGYKSDEKLKNIFKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADS------------------------------ 441 (523)
Q Consensus 392 ATG~~~~~~l~~~~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~------------------------------ 441 (523)
|||++|+...+......... ....-.....+.++.|+||++|.+..
T Consensus 331 A~Gr~Pn~~~L~l~~~~~~~----~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 406 (561)
T PTZ00058 331 CVGRSPNTEDLNLKALNIKT----PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSG 406 (561)
T ss_pred CcCCCCCccccCccccceec----CCCeEEECcCCccCCCCEEEeEeccCcccccccccccccccccccccccccccccc
Confidence 99999997654321111000 00101111224468999999998765
Q ss_pred -----CCchhhHHHHHHHHHHHHcCC
Q 009897 442 -----PSILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 442 -----~~~~~~ae~Qa~~~a~~l~g~ 462 (523)
....+.|..|++.+|..+.|.
T Consensus 407 ~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 407 ESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccCcCchHHHHHHHHHHHHHHhCC
Confidence 223468999999999999875
No 27
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.93 E-value=9.7e-25 Score=228.87 Aligned_cols=294 Identities=16% Similarity=0.182 Sum_probs=181.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG--FKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
++|+|||||++|+++|..|++.+ .+|+|||+++.++ |.. ...|+.. ...+....++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~----------------~~~~~~~--~~~~~~~~~~~~ 60 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA----------------CGLPYFV--GGFFDDPNTMIA 60 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec----------------CCCceEe--ccccCCHHHhhc
Confidence 37999999999999999999875 5899999987652 110 0011100 111222334444
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
+..+..+++++ .+.++++|++|+++. ..|++.+.. ++....+.||+||+|||
T Consensus 61 ~~~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~~~~--~~~~~~~~yd~lviAtG 112 (444)
T PRK09564 61 RTPEEFIKSGI--DVKTEHEVVKVDAKN------------------------KTITVKNLK--TGSIFNDTYDKLMIATG 112 (444)
T ss_pred CCHHHHHHCCC--eEEecCEEEEEECCC------------------------CEEEEEECC--CCCEEEecCCEEEECCC
Confidence 44555666787 788899999998764 345554311 11212234999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhh------hcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAE------LINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~------~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
+ .|+.|++| |.+.- .+.+...+.+... ...+++|+|||+|.+|+|+|..+...+. +|+++.+.
T Consensus 113 ~---~~~~~~i~---g~~~~--~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~---~Vtli~~~ 181 (444)
T PRK09564 113 A---RPIIPPIK---NINLE--NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGK---NVRIIQLE 181 (444)
T ss_pred C---CCCCCCCC---CcCCC--CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCC---cEEEEeCC
Confidence 5 57778777 65421 2444433222111 1357999999999999999999988765 49999887
Q ss_pred ceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCc
Q 009897 263 VHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSC 342 (523)
Q Consensus 263 ~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 342 (523)
+.. ++... + .
T Consensus 182 ~~~-l~~~~--~--------------------------------~----------------------------------- 191 (444)
T PRK09564 182 DRI-LPDSF--D--------------------------------K----------------------------------- 191 (444)
T ss_pred ccc-Cchhc--C--------------------------------H-----------------------------------
Confidence 642 22110 0 0
Q ss_pred ceeecCcchhhhccCCCEEEEecC-ceEEecCc---EEEcCCceeeeccEEEEecCCCCCccccccccchhhh-hhhcCC
Q 009897 343 MFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNG---LVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQ-KQITGS 417 (523)
Q Consensus 343 ~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~---v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~-~~~~~~ 417 (523)
.+.+.+.+.+++.+|+++.+. +.++++++ .+..++.+ +++|.||+|||++++.++++-.+....+ ..+..
T Consensus 192 ---~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~v- 266 (444)
T PRK09564 192 ---EITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGE-YEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIV- 266 (444)
T ss_pred ---HHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCE-EEcCEEEECcCCCcCHHHHHhcCccccCCCCEEE-
Confidence 001111233344456666654 66665432 22345556 9999999999999987654322211101 11111
Q ss_pred CcccccccccCCCCCeEEecccCCC-----------CchhhHHHHHHHHHHHHcCCC
Q 009897 418 SAPLYREGIHPQIPQLAILGYADSP-----------SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 418 ~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
..| +.++.||||++|.+... ...+.|..|++.+|..|.|..
T Consensus 267 --d~~---~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 267 --DEY---GETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH 318 (444)
T ss_pred --CCC---cccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence 112 23579999999976532 235689999999999998864
No 28
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=2.8e-25 Score=233.41 Aligned_cols=305 Identities=16% Similarity=0.192 Sum_probs=181.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee------eCCCCCCCCCCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ------FSDFAWPNSVTETF 100 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 100 (523)
..+||+||||||+|++||..+++.|.+|+|+|+...+||+|.+ +.|+..+......+. ...+.... ..-
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~---~~~ 78 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV---KPT 78 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc---cCc
Confidence 3489999999999999999999999999999987889999876 677665433332221 11111100 011
Q ss_pred CChhHHHHHHHHHHH-----------HhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecc
Q 009897 101 PDHNKVMEYLQAYAA-----------HFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEAR 169 (523)
Q Consensus 101 ~~~~~~~~yl~~~~~-----------~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 169 (523)
....++.++.....+ ..++ .+..+. .+... .....|...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~----a~~~~---------------------~~~v~v~~~~g- 130 (466)
T PRK06115 79 LNLAQMMKQKDESVEALTKGVEFLFRKNKV--DWIKGW----GRLDG---------------------VGKVVVKAEDG- 130 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE----EEEcc---------------------CCEEEEEcCCC-
Confidence 122333333322222 1122 111111 11111 23344443333
Q ss_pred cCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHh
Q 009897 170 NVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANR 249 (523)
Q Consensus 170 ~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~ 249 (523)
+..++.||+||||||+. |. .+| |.+.....++++.+.... ...+++|+|||+|.+|+|+|..+++.
T Consensus 131 ----~~~~~~~d~lVIATGs~---p~--~ip---g~~~~~~~~~~~~~~~~~--~~~~~~vvIIGgG~ig~E~A~~l~~~ 196 (466)
T PRK06115 131 ----SETQLEAKDIVIATGSE---PT--PLP---GVTIDNQRIIDSTGALSL--PEVPKHLVVIGAGVIGLELGSVWRRL 196 (466)
T ss_pred ----ceEEEEeCEEEEeCCCC---CC--CCC---CCCCCCCeEECHHHHhCC--ccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 22369999999999964 43 245 543211124444333221 12479999999999999999999988
Q ss_pred cCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCC
Q 009897 250 NGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNM 329 (523)
Q Consensus 250 ~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 329 (523)
+.+ ||++.+.+. ++|..+
T Consensus 197 G~~---Vtlie~~~~-il~~~d---------------------------------------------------------- 214 (466)
T PRK06115 197 GAQ---VTVVEYLDR-ICPGTD---------------------------------------------------------- 214 (466)
T ss_pred CCe---EEEEeCCCC-CCCCCC----------------------------------------------------------
Confidence 754 999998765 333321
Q ss_pred CCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--CcE--EEc---CC--ceeeeccEEEEecCCCCCc
Q 009897 330 IPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--NGL--VID---GE--TTPLVTDIVIFATGYKSDE 399 (523)
Q Consensus 330 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~v--~l~---dG--~~~~~~D~VI~ATG~~~~~ 399 (523)
+.+...+.+.+++.+|+++.+. +.++++ +++ .+. +| ++ +++|.||+|+|++|+.
T Consensus 215 ---------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~-i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 215 ---------------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAET-LQADYVLVAIGRRPYT 278 (466)
T ss_pred ---------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeE-EEeCEEEEccCCcccc
Confidence 0011112234455567777774 667654 243 332 23 45 8999999999999987
Q ss_pred ccccc--ccchhhh-hhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCCC
Q 009897 400 KLKNI--FKSTYFQ-KQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 400 ~l~~~--~~~~~l~-~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
..+.. .+...-. ..+. . ..+.++.|+||++|.+... ...+.|..||+.++..+.|..
T Consensus 279 ~~l~~~~~g~~~~~~G~~v----d---~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 279 QGLGLETVGLETDKRGMLA----N---DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred ccCCcccccceeCCCCEEE----C---CCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 63221 1111000 1111 1 2234689999999988753 346889999999999998864
No 29
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.93 E-value=9.6e-25 Score=229.79 Aligned_cols=311 Identities=17% Similarity=0.214 Sum_probs=185.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCce----eeCCCCCCCCCCCCCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFY----QFSDFAWPNSVTETFP 101 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 101 (523)
|+.+||+||||||+|++||..|.+.|.+|+|+|+ +.+||+|.+ ++|+..+......+ .+..+.+.. .....
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~--~~~~~ 77 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHA--DGPKI 77 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCc--CCCcc
Confidence 3568999999999999999999999999999999 789999986 56654332222111 112222211 11345
Q ss_pred ChhHHHHHHHHHHHHhCCCCce-E--e-ccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeE
Q 009897 102 DHNKVMEYLQAYAAHFNLFPSI-K--F-DTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEA 177 (523)
Q Consensus 102 ~~~~~~~yl~~~~~~~~l~~~i-~--~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (523)
+..++.++++.+++++.- .+ . + ...|.-+.... .+ .+.+.+.+ ++. +
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~g~~-----------------~~--~~~~~v~v-~~~-------~ 128 (460)
T PRK06292 78 DFKKVMARVRRERDRFVG--GVVEGLEKKPKIDKIKGTA-----------------RF--VDPNTVEV-NGE-------R 128 (460)
T ss_pred CHHHHHHHHHHHHHHHhc--chHHHHHhhCCCEEEEEEE-----------------EE--ccCCEEEE-CcE-------E
Confidence 778888888887776532 22 1 0 01111111100 00 01234554 333 7
Q ss_pred EEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCcc-EEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCE
Q 009897 178 YQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGK-VLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPC 256 (523)
Q Consensus 178 ~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~-~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~V 256 (523)
+.||+||+|||+ . .|.+| |.+...+. ++++.+.... ...+++|+|||+|.+|+|+|..+++.+.+ |
T Consensus 129 ~~~d~lIiATGs---~--~p~ip---g~~~~~~~~~~~~~~~~~~--~~~~k~v~VIGgG~~g~E~A~~l~~~g~~---V 195 (460)
T PRK06292 129 IEAKNIVIATGS---R--VPPIP---GVWLILGDRLLTSDDAFEL--DKLPKSLAVIGGGVIGLELGQALSRLGVK---V 195 (460)
T ss_pred EEeCEEEEeCCC---C--CCCCC---CCcccCCCcEECchHHhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCc---E
Confidence 999999999995 3 34455 54322222 3333222211 13479999999999999999999998754 9
Q ss_pred EEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCccc
Q 009897 257 TLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFL 336 (523)
Q Consensus 257 t~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 336 (523)
+++.|.+. ++|..+ ..
T Consensus 196 tli~~~~~-~l~~~d------------------------------------~~--------------------------- 211 (460)
T PRK06292 196 TVFERGDR-ILPLED------------------------------------PE--------------------------- 211 (460)
T ss_pred EEEecCCC-cCcchh------------------------------------HH---------------------------
Confidence 99998765 323211 00
Q ss_pred ccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC---cEEE--cCC--ceeeeccEEEEecCCCCCccccccccch
Q 009897 337 NQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN---GLVI--DGE--TTPLVTDIVIFATGYKSDEKLKNIFKST 408 (523)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~---~v~l--~dG--~~~~~~D~VI~ATG~~~~~~l~~~~~~~ 408 (523)
+.+.+.+.+++. |+++.+. +.+++.+ ++++ .+| ++ +++|.||+|+|++|+.+.+.+....
T Consensus 212 ----------~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~-i~~D~vi~a~G~~p~~~~l~l~~~g 279 (460)
T PRK06292 212 ----------VSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTET-IEADYVLVATGRRPNTDGLGLENTG 279 (460)
T ss_pred ----------HHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEE-EEeCEEEEccCCccCCCCCCcHhhC
Confidence 011112334444 6666554 5666532 3443 334 34 8999999999999997643211000
Q ss_pred hhhhhhcCCCcccccccccCCCCCeEEecccCCCC-chhhHHHHHHHHHHHHcCC
Q 009897 409 YFQKQITGSSAPLYREGIHPQIPQLAILGYADSPS-ILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 409 ~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~ae~Qa~~~a~~l~g~ 462 (523)
+. ........-...+.++.||||++|.+.... ....|..|++.+|..+.+.
T Consensus 280 -~~--~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 280 -IE--LDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred -CE--ecCCCcEeECCCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 00 000000111122345889999999887543 4578999999999999874
No 30
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.93 E-value=2.7e-25 Score=229.12 Aligned_cols=288 Identities=15% Similarity=0.187 Sum_probs=178.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--ceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF--KPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
.++|+|||||++|++||..|++.|. +|+|+++.+... |. +...++. +...+..+ ..+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~------y~--r~~l~~~---~~~~~~~~---~~~~~----- 63 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP------YE--RPPLSKS---MLLEDSPQ---LQQVL----- 63 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC------CC--CCCCCHH---HHCCCCcc---ccccC-----
Confidence 4689999999999999999999876 799999876441 10 0000000 00000000 00000
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
-.++..+.++ .++.++.|..++... ..|.+.++. .+.||+||+||
T Consensus 64 --~~~~~~~~~i--~~~~g~~V~~id~~~------------------------~~v~~~~g~-------~~~yd~LViAT 108 (396)
T PRK09754 64 --PANWWQENNV--HLHSGVTIKTLGRDT------------------------RELVLTNGE-------SWHWDQLFIAT 108 (396)
T ss_pred --CHHHHHHCCC--EEEcCCEEEEEECCC------------------------CEEEECCCC-------EEEcCEEEEcc
Confidence 0122344566 778888999998754 567776664 79999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCchh----hhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAA----ELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~----~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
|+. |+.|+++ +... ..++......+.. ....+++|+|||+|.+|+|+|..|++.+. +||++.+.+
T Consensus 109 Gs~---~~~~p~~---~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~ 177 (396)
T PRK09754 109 GAA---ARPLPLL---DALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRC---KVTVIELAA 177 (396)
T ss_pred CCC---CCCCCCC---CcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCC
Confidence 954 6655554 3211 1222222111110 12358999999999999999999998765 499999876
Q ss_pred eeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcc
Q 009897 264 HWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCM 343 (523)
Q Consensus 264 ~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 343 (523)
.. ++... + .
T Consensus 178 ~~-l~~~~--~-------------------------------------~------------------------------- 186 (396)
T PRK09754 178 TV-MGRNA--P-------------------------------------P------------------------------- 186 (396)
T ss_pred cc-hhhhc--C-------------------------------------H-------------------------------
Confidence 52 22110 0 0
Q ss_pred eeecCcchhhhccCCCEEEEecC-ceEEecCc---EEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhhcCCCc
Q 009897 344 FTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNG---LVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGSSA 419 (523)
Q Consensus 344 ~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~---v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~~~ 419 (523)
.+.+.+.+.+++.+|+++.+. +.+++.++ +.+.+|++ +++|.||+|+|.+|+..+.+..+... +..+
T Consensus 187 --~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~-i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi----- 257 (396)
T PRK09754 187 --PVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGET-LQADVVIYGIGISANDQLAREANLDT-ANGI----- 257 (396)
T ss_pred --HHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCE-EECCEEEECCCCChhhHHHHhcCCCc-CCCE-----
Confidence 001112233444567777664 66665432 56789988 99999999999999876543221110 1111
Q ss_pred ccccccccCCCCCeEEecccCCC----------CchhhHHHHHHHHHHHHcCCC
Q 009897 420 PLYREGIHPQIPQLAILGYADSP----------SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 420 ~ly~~~~~~~~p~l~~iG~~~~~----------~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
.....+.++.||||++|.+... ..+..|..|++.+|+.|.|..
T Consensus 258 -~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 258 -VIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred -EECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 1112234678999999976531 124679999999999999864
No 31
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=1.9e-24 Score=227.47 Aligned_cols=312 Identities=18% Similarity=0.224 Sum_probs=182.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee-----eCCCCCCCCCCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ-----FSDFAWPNSVTETFPD 102 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 102 (523)
.+||+||||||+|++||..|++.|.+|+|+|+ ..+||+|.. +.|+..+......+. ...+... ......
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~---~~~~~~ 79 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS---GEVTFD 79 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC---cCcccC
Confidence 48999999999999999999999999999998 479999887 556543322111110 0011110 011123
Q ss_pred hhHHHHHHHHHHHHh--CCCCceEe-ccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEE
Q 009897 103 HNKVMEYLQAYAAHF--NLFPSIKF-DTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQ 179 (523)
Q Consensus 103 ~~~~~~yl~~~~~~~--~l~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 179 (523)
...+..+.+...++. ++ ...+ ...|+.++... .|.+...+.|...++ +.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~~-----------------~~~~~~~v~v~~~~g-----~~~~~~ 135 (466)
T PRK07818 80 YGAAFDRSRKVAEGRVKGV--HFLMKKNKITEIHGYG-----------------TFTDANTLEVDLNDG-----GTETVT 135 (466)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhCCCEEEEEEE-----------------EEcCCCEEEEEecCC-----CeeEEE
Confidence 334444433333221 11 1111 11333333211 000112344443322 123789
Q ss_pred eCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEE
Q 009897 180 VDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLL 259 (523)
Q Consensus 180 ~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~ 259 (523)
||+||+|||+. |..| | |.+ +.+.++.+.+... ....+++|+|||+|.+|+|+|..+++.+.+ ||++
T Consensus 136 ~d~lViATGs~---p~~~--p---g~~-~~~~v~~~~~~~~--~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv 201 (466)
T PRK07818 136 FDNAIIATGSS---TRLL--P---GTS-LSENVVTYEEQIL--SRELPKSIVIAGAGAIGMEFAYVLKNYGVD---VTIV 201 (466)
T ss_pred cCEEEEeCCCC---CCCC--C---CCC-CCCcEEchHHHhc--cccCCCeEEEECCcHHHHHHHHHHHHcCCe---EEEE
Confidence 99999999954 5543 4 433 1223443332111 123478999999999999999999998754 9999
Q ss_pred EeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccc
Q 009897 260 FKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQI 339 (523)
Q Consensus 260 ~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 339 (523)
.+.+. ++|..+.
T Consensus 202 ~~~~~-~l~~~d~------------------------------------------------------------------- 213 (466)
T PRK07818 202 EFLDR-ALPNEDA------------------------------------------------------------------- 213 (466)
T ss_pred ecCCC-cCCccCH-------------------------------------------------------------------
Confidence 98765 3333210
Q ss_pred cCcceeecCcchhhhccCCCEEEEecC-ceEEecCc----EEEc--CCc-eeeeccEEEEecCCCCCcccccc--ccchh
Q 009897 340 SSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNG----LVID--GET-TPLVTDIVIFATGYKSDEKLKNI--FKSTY 409 (523)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~----v~l~--dG~-~~~~~D~VI~ATG~~~~~~l~~~--~~~~~ 409 (523)
.+...+.+.+++.+|+++.+. +.++++++ +++. +|+ +.+++|.||+|+|++|+..++.+ .+...
T Consensus 214 ------~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~ 287 (466)
T PRK07818 214 ------EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVAL 287 (466)
T ss_pred ------HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEE
Confidence 011122244555677888775 67775432 3444 664 23899999999999999764221 11110
Q ss_pred h-hhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCCC
Q 009897 410 F-QKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 410 l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
. +..+.. ..| +.++.|+||++|.+.. ....+.|..|++.+|..+.|..
T Consensus 288 ~~~g~i~v---d~~---~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~ 337 (466)
T PRK07818 288 TDRGAIAI---DDY---MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAE 337 (466)
T ss_pred CCCCcEee---CCC---cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 0 011111 122 3468999999998764 3456889999999999998853
No 32
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.93 E-value=2.5e-24 Score=225.08 Aligned_cols=296 Identities=15% Similarity=0.171 Sum_probs=179.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC-CCccccc--ccCcccccCCcCceeeCCCCCCCCCCCCCCChhH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG-IGGVWSQ--TIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNK 105 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~-~GG~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (523)
+.+||+||||||+|++||..|++.|.+|+|+|+.+. +||+|.. +.|...+...... ..+..+
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~---------------~~~~~~ 66 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK---------------NLSFEQ 66 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc---------------CCCHHH
Confidence 458999999999999999999999999999999864 6998764 4454332211110 012223
Q ss_pred HHHHHHH-----------HHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcc
Q 009897 106 VMEYLQA-----------YAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSA 174 (523)
Q Consensus 106 ~~~yl~~-----------~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (523)
+.++.+. ...+.++ .+..+ ++..+ . ..+|.+..+. .
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~~~~~---~-----------------------~~~v~v~~~~----~ 113 (438)
T PRK07251 67 VMATKNTVTSRLRGKNYAMLAGSGV--DLYDA-EAHFV---S-----------------------NKVIEVQAGD----E 113 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEc---c-----------------------CCEEEEeeCC----C
Confidence 3333222 2222233 22222 11111 1 1345554321 1
Q ss_pred eeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCcc
Q 009897 175 TEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRY 254 (523)
Q Consensus 175 ~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 254 (523)
..++.||+||+|||+ .|+.|++| |.+... .++++.+.... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 114 ~~~~~~d~vViATGs---~~~~p~i~---G~~~~~-~v~~~~~~~~~--~~~~~~vvIIGgG~~g~e~A~~l~~~g~--- 181 (438)
T PRK07251 114 KIELTAETIVINTGA---VSNVLPIP---GLADSK-HVYDSTGIQSL--ETLPERLGIIGGGNIGLEFAGLYNKLGS--- 181 (438)
T ss_pred cEEEEcCEEEEeCCC---CCCCCCCC---CcCCCC-cEEchHHHhcc--hhcCCeEEEECCCHHHHHHHHHHHHcCC---
Confidence 236899999999995 47888888 764332 23444333322 1247899999999999999999998765
Q ss_pred CEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCc
Q 009897 255 PCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHS 334 (523)
Q Consensus 255 ~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 334 (523)
+||++.|.+. ++|.... .
T Consensus 182 ~Vtli~~~~~-~l~~~~~--------------------------------~----------------------------- 199 (438)
T PRK07251 182 KVTVLDAAST-ILPREEP--------------------------------S----------------------------- 199 (438)
T ss_pred eEEEEecCCc-cCCCCCH--------------------------------H-----------------------------
Confidence 4999999765 3333210 0
Q ss_pred ccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC--cE-EEcCCceeeeccEEEEecCCCCCccccccccchhh
Q 009897 335 FLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--GL-VIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYF 410 (523)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~v-~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l 410 (523)
+.+.+.+.+++.+|+++.+. +.+++.+ ++ +..+|++ +++|.||+|||.+|+...+.+.... +
T Consensus 200 ------------~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~-i~~D~viva~G~~p~~~~l~l~~~~-~ 265 (438)
T PRK07251 200 ------------VAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDET-YRFDALLYATGRKPNTEPLGLENTD-I 265 (438)
T ss_pred ------------HHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeE-EEcCEEEEeeCCCCCcccCCchhcC-c
Confidence 00111233444567777664 6666543 33 3346777 9999999999999987543221111 0
Q ss_pred hhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 411 QKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 411 ~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
. ........-...+.++.||+|++|.+... ...+.+..|++.++..+.|.
T Consensus 266 ~--~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 266 E--LTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred E--ECCCCcEEECCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 0 00001011112234578999999987654 34577888899888888765
No 33
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=227.40 Aligned_cols=306 Identities=16% Similarity=0.200 Sum_probs=179.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee----eCCCCCCCCCCCCCCCh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ----FSDFAWPNSVTETFPDH 103 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 103 (523)
.+||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|.+ ++|+..+......+. ...+.+.. .....+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~--~~~~~~~ 81 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVF--GEPKIDI 81 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCccc--CCCCcCH
Confidence 489999999999999999999999999999998889999877 677754422111111 11111110 0112234
Q ss_pred hHHHHHHHHHHH-----------HhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 104 NKVMEYLQAYAA-----------HFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 104 ~~~~~yl~~~~~-----------~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
..+.++.+...+ ..++ .+..+ ++..++ .....|+..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~a~~~~------------------------~~~v~v~~~~g---- 130 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKV--TVVNG-LGKFTG------------------------GNTLEVTGEDG---- 130 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc------------------------CCEEEEecCCC----
Confidence 455554444333 2343 33332 222211 12233433222
Q ss_pred cceeEEEeCEEEEeeeecCCCCC-CCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcC
Q 009897 173 SATEAYQVDFVILCIGRYSDLPN-TPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNG 251 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~-~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 251 (523)
+..++.||+||+|||+. |. .|.++ +... .++.+.+.... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 131 -~~~~~~~d~lViATGs~---p~~~p~~~---~~~~---~v~~~~~~~~~--~~~~~~vvIiGgG~iG~E~A~~l~~~G~ 198 (471)
T PRK06467 131 -KTTVIEFDNAIIAAGSR---PIQLPFIP---HDDP---RIWDSTDALEL--KEVPKRLLVMGGGIIGLEMGTVYHRLGS 198 (471)
T ss_pred -ceEEEEcCEEEEeCCCC---CCCCCCCC---CCCC---cEEChHHhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 12378999999999954 65 34344 3211 23433333222 1236899999999999999999999875
Q ss_pred CccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCC
Q 009897 252 VRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIP 331 (523)
Q Consensus 252 ~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 331 (523)
+ ||++.+.+. ++|..+. .
T Consensus 199 ~---Vtlv~~~~~-il~~~d~------------------------------------~---------------------- 216 (471)
T PRK06467 199 E---VDVVEMFDQ-VIPAADK------------------------------------D---------------------- 216 (471)
T ss_pred C---EEEEecCCC-CCCcCCH------------------------------------H----------------------
Confidence 4 999998775 3343210 0
Q ss_pred CCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEe--cCc--EEEcCC----ceeeeccEEEEecCCCCCcccc
Q 009897 332 GHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFC--KNG--LVIDGE----TTPLVTDIVIFATGYKSDEKLK 402 (523)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~--~~~--v~l~dG----~~~~~~D~VI~ATG~~~~~~l~ 402 (523)
+...+.+.+++. |.++.+. +++++ +++ +.+.++ ++ +++|.||+|+|++|+..++
T Consensus 217 ---------------~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~-i~~D~vi~a~G~~pn~~~l 279 (471)
T PRK06467 217 ---------------IVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEP-QRYDAVLVAVGRVPNGKLL 279 (471)
T ss_pred ---------------HHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceE-EEeCEEEEeecccccCCcc
Confidence 001111223333 5555553 55554 233 344432 34 8999999999999997643
Q ss_pred ccccchhhhhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCC
Q 009897 403 NIFKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 403 ~~~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~ 462 (523)
...... +. +.......-...+.++.||||++|.+.. ....+.|..|++.++..+.|.
T Consensus 280 ~~~~~g-l~--~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 280 DAEKAG-VE--VDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred ChhhcC-ce--ECCCCcEeeCCCcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 211100 00 0000000111223468999999998754 345688999999999999875
No 34
>PRK14727 putative mercuric reductase; Provisional
Probab=99.93 E-value=1.4e-24 Score=228.95 Aligned_cols=313 Identities=16% Similarity=0.174 Sum_probs=184.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceeeC-CCCCCCC-CCCCCCChh
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQFS-DFAWPNS-VTETFPDHN 104 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 104 (523)
+.+||+|||||++|+++|..|.+.|.+|+|+|+.+.+||+|.+ ++|+..+..+...+... ..++... ....-.+..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 5589999999999999999999999999999998899999988 57776553332221111 1111000 000011233
Q ss_pred HHHHHHHHHHHHhC---CCCceEe--ccEEEE--EEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeE
Q 009897 105 KVMEYLQAYAAHFN---LFPSIKF--DTKVTS--IDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEA 177 (523)
Q Consensus 105 ~~~~yl~~~~~~~~---l~~~i~~--~~~V~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (523)
.+..+......++. ....+.. +.++.. ....+ .+.+.|...++. .++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~---------------------~~~v~v~~~~g~-----~~~ 148 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD---------------------GNTLVVRLHDGG-----ERV 148 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec---------------------CCEEEEEeCCCc-----eEE
Confidence 33333333222211 0001111 112111 12222 245666654432 236
Q ss_pred EEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEE
Q 009897 178 YQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCT 257 (523)
Q Consensus 178 ~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt 257 (523)
+.||+||+|||+ .|..|++| |.+.. ..+++.+... ....+++|+|||+|.+|+|+|..++..+.+ ||
T Consensus 149 ~~~d~lViATGs---~p~~p~i~---G~~~~--~~~~~~~~l~--~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~---Vt 215 (479)
T PRK14727 149 LAADRCLIATGS---TPTIPPIP---GLMDT--PYWTSTEALF--SDELPASLTVIGSSVVAAEIAQAYARLGSR---VT 215 (479)
T ss_pred EEeCEEEEecCC---CCCCCCCC---CcCcc--ceecchHHhc--cccCCCeEEEECCCHHHHHHHHHHHHcCCE---EE
Confidence 899999999994 58888888 65432 2232222111 112368999999999999999999988754 99
Q ss_pred EEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccc
Q 009897 258 LLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLN 337 (523)
Q Consensus 258 ~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 337 (523)
++.|. . +++..+ .
T Consensus 216 lv~~~-~-~l~~~d-----------------------------------~------------------------------ 228 (479)
T PRK14727 216 ILARS-T-LLFRED-----------------------------------P------------------------------ 228 (479)
T ss_pred EEEcC-C-CCCcch-----------------------------------H------------------------------
Confidence 99874 2 223221 0
Q ss_pred cccCcceeecCcchhhhccCCCEEEEecC-ceEEe--cCcEEEc-CCceeeeccEEEEecCCCCCccccccc--cchhh-
Q 009897 338 QISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFC--KNGLVID-GETTPLVTDIVIFATGYKSDEKLKNIF--KSTYF- 410 (523)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~--~~~v~l~-dG~~~~~~D~VI~ATG~~~~~~l~~~~--~~~~l- 410 (523)
.+.+.+.+.+++.+|+++.+. +.+++ ++++.+. ++.+ +++|.||+|+|+.|+..++... +....
T Consensus 229 --------~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~-i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~ 299 (479)
T PRK14727 229 --------LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGE-LRAEKLLISTGRHANTHDLNLEAVGVTTDT 299 (479)
T ss_pred --------HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCe-EEeCEEEEccCCCCCccCCCchhhCceecC
Confidence 011112233445566777654 55554 2333332 3345 8999999999999997643211 11100
Q ss_pred hhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 411 QKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 411 ~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+..+.. .-| +.++.||||++|.+... ...+.+..|++.+|..+.|.
T Consensus 300 ~G~i~V---d~~---~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 300 SGAIVV---NPA---METSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred CCCEEE---CCC---eecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 011111 112 34588999999988753 34678899999999999875
No 35
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.93 E-value=1.3e-24 Score=240.30 Aligned_cols=289 Identities=16% Similarity=0.215 Sum_probs=189.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC----CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChh
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN----GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHN 104 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (523)
+.++|+|||+|++|+.+|.+|++. +++|+||++.+.++ |..+.+ +. .+. . ...+
T Consensus 2 ~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~------Y~r~~L--~~---~~~----------~-~~~~ 59 (847)
T PRK14989 2 SKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA------YDRVHL--SS---YFS----------H-HTAE 59 (847)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc------ccCCcc--hH---hHc----------C-CCHH
Confidence 456899999999999999999864 47899999987652 111111 00 000 0 1123
Q ss_pred HHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEE
Q 009897 105 KVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVI 184 (523)
Q Consensus 105 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vV 184 (523)
++.....++.++.++ .++.+++|+.++... ..|++.++. .+.||+||
T Consensus 60 ~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~~------------------------~~V~~~~G~-------~i~yD~LV 106 (847)
T PRK14989 60 ELSLVREGFYEKHGI--KVLVGERAITINRQE------------------------KVIHSSAGR-------TVFYDKLI 106 (847)
T ss_pred HccCCCHHHHHhCCC--EEEcCCEEEEEeCCC------------------------cEEEECCCc-------EEECCEEE
Confidence 333334455666787 788899999998753 567766654 79999999
Q ss_pred EeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchh----hhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEE
Q 009897 185 LCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAA----ELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLF 260 (523)
Q Consensus 185 lAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~----~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~ 260 (523)
+|||+ .|..|++| |.+.. .++......+.. ....+++++|||+|.+|+|+|..|+..+.+ ||++.
T Consensus 107 IATGs---~p~~p~ip---G~~~~--~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~---VtvVe 175 (847)
T PRK14989 107 MATGS---YPWIPPIK---GSETQ--DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVE---THVIE 175 (847)
T ss_pred ECCCC---CcCCCCCC---CCCCC--CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEe
Confidence 99995 58888888 65532 122221211110 123578999999999999999999998754 99999
Q ss_pred eeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCccccccc
Q 009897 261 KTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQIS 340 (523)
Q Consensus 261 r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 340 (523)
+.+. ++|... + .
T Consensus 176 ~~~~-ll~~~l--d---------------------------------~-------------------------------- 187 (847)
T PRK14989 176 FAPM-LMAEQL--D---------------------------------Q-------------------------------- 187 (847)
T ss_pred cccc-chhhhc--C---------------------------------H--------------------------------
Confidence 8765 223210 0 0
Q ss_pred CcceeecCcchhhhccCCCEEEEecC-ceEEecC------cEEEcCCceeeeccEEEEecCCCCCccccccccchhhh-h
Q 009897 341 SCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN------GLVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQ-K 412 (523)
Q Consensus 341 ~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~------~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~-~ 412 (523)
.....+.+.+++.+|+++.+. ++++.++ .++++||++ +++|.||+|+|++|+..+++..+...-+ .
T Consensus 188 -----~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~-i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G 261 (847)
T PRK14989 188 -----MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE-LEVDFIVFSTGIRPQDKLATQCGLAVAPRG 261 (847)
T ss_pred -----HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCE-EEcCEEEECCCcccCchHHhhcCccCCCCC
Confidence 011112234455567777775 6666432 367889998 9999999999999998754322211000 0
Q ss_pred hhcCCCcccccccccCCCCCeEEecccCCC-----CchhhHHHHHHHHHHHHcCCC
Q 009897 413 QITGSSAPLYREGIHPQIPQLAILGYADSP-----SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 413 ~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
.+.. . ..+.++.||||++|.+... ..+..+..||+.+|.+|.|..
T Consensus 262 ~I~V---D---~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 262 GIVI---N---DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred cEEE---C---CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 1111 1 2234679999999987642 134678899999999999864
No 36
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.93 E-value=3.2e-24 Score=225.01 Aligned_cols=321 Identities=16% Similarity=0.206 Sum_probs=190.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHC-CCceEEEccC--------CCCCccccc--ccCcccccCCcCceee----CCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLEN-GFKPIVFEAR--------SGIGGVWSQ--TIESTKLQTPKSFYQF----SDFAWPN 94 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~--------~~~GG~w~~--~~~~~~~~~~~~~~~~----~~~~~~~ 94 (523)
.+||+||||||+|..||..+++. |.+|+|+|+. ..+||+|.+ +.|+..+......+.. ..+.+..
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~ 82 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF 82 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence 48999999999999999999996 9999999974 579999988 7787765433322111 1111110
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhC--CCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 95 SVTETFPDHNKVMEYLQAYAAHFN--LFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 95 ~~~~~~~~~~~~~~yl~~~~~~~~--l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
.....-.+...+.++.+.+.+... ....+.-...|+-+.... .| .+..+|.++...+++
T Consensus 83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a-----------------~f--~~~~~v~V~~~~~~~ 143 (486)
T TIGR01423 83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG-----------------AL--EDKNVVLVRESADPK 143 (486)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE-----------------EE--ccCCEEEEeeccCCC
Confidence 000111244455555554443321 000011001122222111 00 122455554321111
Q ss_pred c-ceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcC
Q 009897 173 S-ATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNG 251 (523)
Q Consensus 173 ~-~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 251 (523)
+ ..+++.||+||||||+ .|..|++| |.+. ++.+.+.... ...+++|+|||+|.+|+|+|..++....
T Consensus 144 ~~~~~~~~~d~lIIATGs---~p~~p~i~---G~~~----~~~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~~~~l~~ 211 (486)
T TIGR01423 144 SAVKERLQAEHILLATGS---WPQMLGIP---GIEH----CISSNEAFYL--DEPPRRVLTVGGGFISVEFAGIFNAYKP 211 (486)
T ss_pred CCcceEEECCEEEEecCC---CCCCCCCC---Chhh----eechhhhhcc--ccCCCeEEEECCCHHHHHHHHHHHHhcc
Confidence 1 1247999999999995 57888888 7542 2222222211 1247899999999999999988876522
Q ss_pred CccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCC
Q 009897 252 VRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIP 331 (523)
Q Consensus 252 ~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 331 (523)
.+.+||++.+.+. ++|..+
T Consensus 212 ~G~~Vtli~~~~~-il~~~d------------------------------------------------------------ 230 (486)
T TIGR01423 212 RGGKVTLCYRNNM-ILRGFD------------------------------------------------------------ 230 (486)
T ss_pred CCCeEEEEecCCc-cccccC------------------------------------------------------------
Confidence 2245999998776 334322
Q ss_pred CCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--C---cEEEcCCceeeeccEEEEecCCCCCcccccc-
Q 009897 332 GHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--N---GLVIDGETTPLVTDIVIFATGYKSDEKLKNI- 404 (523)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~---~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~- 404 (523)
+.+.+.+.+.+++.+|+++.+. +.+++. + .+.+.+|++ +++|.||+|||++|+..++.+
T Consensus 231 -------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~-i~~D~vl~a~G~~Pn~~~l~l~ 296 (486)
T TIGR01423 231 -------------STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKT-LDVDVVMMAIGRVPRTQTLQLD 296 (486)
T ss_pred -------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCE-EEcCEEEEeeCCCcCcccCCch
Confidence 0011122234455567777765 666653 2 266778887 999999999999999764321
Q ss_pred -ccchhh-hhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 405 -FKSTYF-QKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 405 -~~~~~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
.+...- ...+.. ..| +.++.||||++|.+... ...+.|..|++.++.++.|.
T Consensus 297 ~~gl~~~~~G~I~V---d~~---l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 297 KVGVELTKKGAIQV---DEF---SRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred hhCceECCCCCEec---CCC---CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 111100 011111 112 33689999999988753 34678999999999999874
No 37
>PRK13748 putative mercuric reductase; Provisional
Probab=99.93 E-value=3.7e-24 Score=230.86 Aligned_cols=309 Identities=16% Similarity=0.225 Sum_probs=184.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee-eCCCCCCCCC--CCCCCChh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ-FSDFAWPNSV--TETFPDHN 104 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 104 (523)
.+||+||||||+|++||..|++.|.+|+|||+. .+||+|.+ ++|+..+..+..... ....++...+ .......+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 489999999999999999999999999999996 89999987 667665432221111 0011110000 01112445
Q ss_pred HHHHHHHHHHHHhCC-------CC--ceEe-ccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcc
Q 009897 105 KVMEYLQAYAAHFNL-------FP--SIKF-DTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSA 174 (523)
Q Consensus 105 ~~~~yl~~~~~~~~l-------~~--~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (523)
.+.++.+....++.- .. .+.+ ..++..++ ...+.|++.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~------------------------~~~~~v~~~~g~----- 227 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKD------------------------DQTLIVRLNDGG----- 227 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEec------------------------CCEEEEEeCCCc-----
Confidence 555554444433210 00 1111 11232222 234666554331
Q ss_pred eeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCcc
Q 009897 175 TEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRY 254 (523)
Q Consensus 175 ~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 254 (523)
.+.+.||+||+|||+ .|..|++| |.+.. ..+++.+... ....+++|+|||+|.+|+|+|..+++.+.+
T Consensus 228 ~~~~~~d~lviAtGs---~p~~p~i~---g~~~~--~~~~~~~~~~--~~~~~~~vvViGgG~ig~E~A~~l~~~g~~-- 295 (561)
T PRK13748 228 ERVVAFDRCLIATGA---SPAVPPIP---GLKET--PYWTSTEALV--SDTIPERLAVIGSSVVALELAQAFARLGSK-- 295 (561)
T ss_pred eEEEEcCEEEEcCCC---CCCCCCCC---CCCcc--ceEccHHHhh--cccCCCeEEEECCCHHHHHHHHHHHHcCCE--
Confidence 236899999999994 58888888 76542 1232222111 123479999999999999999999998754
Q ss_pred CEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCc
Q 009897 255 PCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHS 334 (523)
Q Consensus 255 ~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 334 (523)
||++.|.. +++..+ .
T Consensus 296 -Vtli~~~~--~l~~~d-----------------------------------~--------------------------- 310 (561)
T PRK13748 296 -VTILARST--LFFRED-----------------------------------P--------------------------- 310 (561)
T ss_pred -EEEEecCc--cccccC-----------------------------------H---------------------------
Confidence 99998853 223221 0
Q ss_pred ccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--CcEEEc-CCceeeeccEEEEecCCCCCcccccc--ccch
Q 009897 335 FLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--NGLVID-GETTPLVTDIVIFATGYKSDEKLKNI--FKST 408 (523)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~v~l~-dG~~~~~~D~VI~ATG~~~~~~l~~~--~~~~ 408 (523)
.+...+.+.+++.+|+++.+. +.+++. +.+.+. ++.+ +++|.||+|+|++|+..++.+ .+..
T Consensus 311 -----------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G~~pn~~~l~l~~~g~~ 378 (561)
T PRK13748 311 -----------AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGE-LRADKLLVATGRAPNTRSLALDAAGVT 378 (561)
T ss_pred -----------HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCe-EEeCEEEEccCCCcCCCCcCchhcCce
Confidence 011112234445567777664 566643 233332 3345 999999999999999764321 1111
Q ss_pred hhhhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 409 YFQKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 409 ~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+.. .....-...+.++.||||++|.+... ...+.+..|++.++..+.|.
T Consensus 379 -~~~----~g~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 379 -VNA----QGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred -ECC----CCCEeECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 110 00011112234689999999988643 34678999999999999875
No 38
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.93 E-value=8.3e-25 Score=231.09 Aligned_cols=312 Identities=16% Similarity=0.247 Sum_probs=190.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC--------CCCccccc--ccCcccccCCcCceee-----CCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS--------GIGGVWSQ--TIESTKLQTPKSFYQF-----SDFAWPN 94 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--------~~GG~w~~--~~~~~~~~~~~~~~~~-----~~~~~~~ 94 (523)
.+||+||||||+|++||..|.+.|.+|+|+|+.. .+||++.+ ++|+..+......+.. ..+.+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 3899999999999999999999999999999631 48999866 7776544322111110 1111111
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcc
Q 009897 95 SVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSA 174 (523)
Q Consensus 95 ~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (523)
..-.+..++.++++..++.++. .+....++..|+... ++ + .+ .+.++|.+.+.. +
T Consensus 85 ---~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~--g~-----------a-~~--~~~~~v~v~~~~----~ 139 (499)
T PTZ00052 85 ---SSSFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYIN--GL-----------A-KL--KDEHTVSYGDNS----Q 139 (499)
T ss_pred ---CCCcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEE--EE-----------E-EE--ccCCEEEEeeCC----C
Confidence 1134667888888888877654 333222222222110 00 0 00 123456654321 1
Q ss_pred eeEEEeCEEEEeeeecCCCCCCCC-CCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCc
Q 009897 175 TEAYQVDFVILCIGRYSDLPNTPD-FPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVR 253 (523)
Q Consensus 175 ~~~~~~d~vVlAtG~~s~~p~~p~-~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 253 (523)
...+.||+||||||+ .|..|. +| |.+.+ .+.+.+.... ...+++|+|||+|.+|+|+|..|+..+.+
T Consensus 140 ~~~i~~d~lIIATGs---~p~~p~~i~---G~~~~---~~~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~- 207 (499)
T PTZ00052 140 EETITAKYILIATGG---RPSIPEDVP---GAKEY---SITSDDIFSL--SKDPGKTLIVGASYIGLETAGFLNELGFD- 207 (499)
T ss_pred ceEEECCEEEEecCC---CCCCCCCCC---Cccce---eecHHHHhhh--hcCCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 237999999999995 477774 77 65432 2222222211 12368999999999999999999998754
Q ss_pred cCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCC
Q 009897 254 YPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGH 333 (523)
Q Consensus 254 ~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 333 (523)
||++.+. . +++..+ .
T Consensus 208 --Vtli~~~-~-~l~~~d------------------------------------~------------------------- 222 (499)
T PTZ00052 208 --VTVAVRS-I-PLRGFD------------------------------------R------------------------- 222 (499)
T ss_pred --EEEEEcC-c-ccccCC------------------------------------H-------------------------
Confidence 9999874 2 223221 0
Q ss_pred cccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--C--cEEEcCCceeeeccEEEEecCCCCCcccccc--cc
Q 009897 334 SFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--N--GLVIDGETTPLVTDIVIFATGYKSDEKLKNI--FK 406 (523)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~--~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~--~~ 406 (523)
.+.+.+.+.+++.+|+++.+. +.++.. + .+.+.+|++ +++|.||+|+|++|+..++.+ ++
T Consensus 223 ------------~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~-i~~D~vl~a~G~~pn~~~l~l~~~g 289 (499)
T PTZ00052 223 ------------QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTT-ELFDTVLYATGRKPDIKGLNLNAIG 289 (499)
T ss_pred ------------HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCE-EEcCEEEEeeCCCCCccccCchhcC
Confidence 011122234445557777664 444542 2 266778888 999999999999999865421 11
Q ss_pred chhhhhhhcCCCcccccccccCCCCCeEEecccCC--CCchhhHHHHHHHHHHHHcCC
Q 009897 407 STYFQKQITGSSAPLYREGIHPQIPQLAILGYADS--PSILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 407 ~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~ae~Qa~~~a~~l~g~ 462 (523)
.. ++.. + ....-.. .++.|+||++|.+.. ....+.|..|++.+|..|.|.
T Consensus 290 ~~-~~~~--G-~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 290 VH-VNKS--N-KIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred cE-ECCC--C-CEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 11 1100 0 0000111 578899999999753 345688999999999999874
No 39
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.93 E-value=1.4e-24 Score=240.41 Aligned_cols=285 Identities=15% Similarity=0.214 Sum_probs=186.1
Q ss_pred EEEECCChHHHHHHHHHHHC---CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 33 IAIIGAGVSGLLACKYTLEN---GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 33 v~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
|+|||||++|+.+|.+|++. +++|+|||+.+.++ |....+ +. + .....+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~------y~r~~L--~~-------~------l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN------YNRILL--SS-------V------LQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC------cccccc--cH-------H------HCCCCCHHHccCC
Confidence 68999999999999999875 46899999987652 110000 00 0 0001122333333
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
..++.++.++ .++++++|+.|+... +.|.+.++. ++.||+||+|||+
T Consensus 60 ~~~~~~~~gv--~~~~g~~V~~Id~~~------------------------k~V~~~~g~-------~~~yD~LVlATGs 106 (785)
T TIGR02374 60 SKDWYEKHGI--TLYTGETVIQIDTDQ------------------------KQVITDAGR-------TLSYDKLILATGS 106 (785)
T ss_pred CHHHHHHCCC--EEEcCCeEEEEECCC------------------------CEEEECCCc-------EeeCCEEEECCCC
Confidence 4455566788 888999999998754 677777665 7999999999995
Q ss_pred cCCCCCCCCCCCCCCCCCCCccEEecCCCCchh----hhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeecee
Q 009897 190 YSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAA----ELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHW 265 (523)
Q Consensus 190 ~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~----~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~ 265 (523)
.|+.|++| |.+.. + ++......+.. ....+++|+|||+|.+|+|+|..|++.+.. ||++.+.+.+
T Consensus 107 ---~p~~p~ip---G~~~~-~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~---Vtvv~~~~~l 175 (785)
T TIGR02374 107 ---YPFILPIP---GADKK-G-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD---VSVIHHAPGL 175 (785)
T ss_pred ---CcCCCCCC---CCCCC-C-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCe---EEEEccCCch
Confidence 58888888 75532 1 22222211110 112579999999999999999999998754 9999987652
Q ss_pred EecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCccee
Q 009897 266 MVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFT 345 (523)
Q Consensus 266 ~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 345 (523)
+ +... + ..
T Consensus 176 l-~~~l--d---------------------------------~~------------------------------------ 183 (785)
T TIGR02374 176 M-AKQL--D---------------------------------QT------------------------------------ 183 (785)
T ss_pred h-hhhc--C---------------------------------HH------------------------------------
Confidence 2 2110 0 00
Q ss_pred ecCcchhhhccCCCEEEEecC-ceEEecC----cEEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhhcCCCcc
Q 009897 346 VLPRNFYDRVQGGGLSLMKSR-SFTFCKN----GLVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGSSAP 420 (523)
Q Consensus 346 ~~~~~~~~~~~~g~v~v~~~~-i~~~~~~----~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~~~~ 420 (523)
....+.+.+++.+|+++.+. +.++.++ +|+++||++ +++|.||+|+|++|+..+.+..+... ..-+.. .
T Consensus 184 -~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~-i~~D~Vi~a~G~~Pn~~la~~~gl~~-~ggI~V---d 257 (785)
T TIGR02374 184 -AGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSS-LEADLIVMAAGIRPNDELAVSAGIKV-NRGIIV---N 257 (785)
T ss_pred -HHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCE-EEcCEEEECCCCCcCcHHHHhcCCcc-CCCEEE---C
Confidence 00111233445567777765 6666543 378899998 99999999999999987543222111 111111 1
Q ss_pred cccccccCCCCCeEEecccCCC-----CchhhHHHHHHHHHHHHcCCC
Q 009897 421 LYREGIHPQIPQLAILGYADSP-----SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 421 ly~~~~~~~~p~l~~iG~~~~~-----~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
..+.++.||||++|.+... ..+..+..||+.+|.+|.|..
T Consensus 258 ---~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 258 ---DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred ---CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 1234689999999987532 123457899999999999865
No 40
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=224.86 Aligned_cols=296 Identities=16% Similarity=0.170 Sum_probs=181.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|||||||++|+.+|++|.+.+.+|+|||+++.. .|. |............+++...
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~------~~~----------------~~l~~~~~g~~~~~~~~~~ 67 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM------LFT----------------PLLPQTTTGTLEFRSICEP 67 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc------chh----------------hhHHHhcccCCChHHhHHH
Confidence 378999999999999999998778999999987643 010 0000001111223445555
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeeccc-CCcceeEEEeCEEEEeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARN-VSSATEAYQVDFVILCIG 188 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~vVlAtG 188 (523)
++..++.++. . ....+|++|+... ....+...+... .++...++.||+||+|||
T Consensus 68 ~~~~~~~~~~--~-~i~~~V~~Id~~~----------------------~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG 122 (424)
T PTZ00318 68 VRPALAKLPN--R-YLRAVVYDVDFEE----------------------KRVKCGVVSKSNNANVNTFSVPYDKLVVAHG 122 (424)
T ss_pred HHHHhccCCe--E-EEEEEEEEEEcCC----------------------CEEEEecccccccccCCceEecCCEEEECCC
Confidence 6666665554 3 3457899998764 223332111100 001112799999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecCCCCc---------------------hhhhcCCCEEEEEcCCCCHHHHHHHHH
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL---------------------AAELINGKRVTVIGFQKSAVDVAAEVA 247 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~---------------------~~~~~~~k~V~VvG~G~sg~d~a~~l~ 247 (523)
+ .|..|.+| |.+.. .+....+.+ .....+.++|+|||+|.+|+|+|.+|+
T Consensus 123 s---~~~~~~ip---G~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~ 193 (424)
T PTZ00318 123 A---RPNTFNIP---GVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELA 193 (424)
T ss_pred c---ccCCCCCC---CHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHH
Confidence 5 46777777 65431 111111100 000112359999999999999999998
Q ss_pred HhcC-----------CccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHH
Q 009897 248 NRNG-----------VRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVES 316 (523)
Q Consensus 248 ~~~~-----------~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (523)
.... ...+||++++.+. ++|..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~Vtlv~~~~~-ll~~~~--------------------------------------------- 227 (424)
T PTZ00318 194 DFFRDDVRNLNPELVEECKVTVLEAGSE-VLGSFD--------------------------------------------- 227 (424)
T ss_pred HHHHHHHHhhhhcccccCEEEEEcCCCc-ccccCC---------------------------------------------
Confidence 7420 1245999988765 223221
Q ss_pred HHHhcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecCcEEEcCCceeeeccEEEEecCC
Q 009897 317 CLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNGLVIDGETTPLVTDIVIFATGY 395 (523)
Q Consensus 317 ~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~v~l~dG~~~~~~D~VI~ATG~ 395 (523)
..+.+.+.+.+++.+|+++.+. +.+++++.|+++||++ +++|.||+|+|.
T Consensus 228 ----------------------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~-i~~d~vi~~~G~ 278 (424)
T PTZ00318 228 ----------------------------QALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEV-IPTGLVVWSTGV 278 (424)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCE-EEccEEEEccCC
Confidence 0011222345566778988775 8899999999999998 999999999999
Q ss_pred CCCccccccccchhh-hhhhcCCCcccccccccCCCCCeEEecccCCC------CchhhHHHHHHHHHHHHcCC
Q 009897 396 KSDEKLKNIFKSTYF-QKQITGSSAPLYREGIHPQIPQLAILGYADSP------SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 396 ~~~~~l~~~~~~~~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+++. +.+.++.... +..+.. . ..+..+++||||++|.+... .....|+.|++.+|..|.+.
T Consensus 279 ~~~~-~~~~~~l~~~~~G~I~V---d--~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~ 346 (424)
T PTZ00318 279 GPGP-LTKQLKVDKTSRGRISV---D--DHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNE 346 (424)
T ss_pred CCcc-hhhhcCCcccCCCcEEe---C--CCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9874 3322221100 011111 1 12223689999999987652 23567899999998877544
No 41
>PRK07846 mycothione reductase; Reviewed
Probab=99.92 E-value=3.4e-24 Score=223.93 Aligned_cols=304 Identities=13% Similarity=0.098 Sum_probs=185.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceee----CCCCCCCCCCCCCCChh
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQF----SDFAWPNSVTETFPDHN 104 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 104 (523)
+||+||||||+|.+||.. ..|.+|+|+|+ ..+||+|.+ +.|+..+......+.. ..+.... .....+..
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~~~~ 76 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDA--ELDGVRWP 76 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccC--CCCcCCHH
Confidence 799999999999998866 46999999998 569999987 7777755433322211 1111110 01123556
Q ss_pred HHHHHHHHHHHHhCCC-CceE----eccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEE
Q 009897 105 KVMEYLQAYAAHFNLF-PSIK----FDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQ 179 (523)
Q Consensus 105 ~~~~yl~~~~~~~~l~-~~i~----~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 179 (523)
++.++.....+++.-. .... .+.++..=+... .+..+|++.++. ++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~---------------------~~~~~V~v~~g~-------~~~ 128 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF---------------------IGPKTLRTGDGE-------EIT 128 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE---------------------ecCCEEEECCCC-------EEE
Confidence 6777766665554210 0111 122222111100 123567776554 799
Q ss_pred eCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecC-CCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEE
Q 009897 180 VDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSM-NDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTL 258 (523)
Q Consensus 180 ~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~-~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~ 258 (523)
||+||+|||+ .|..|++| |.+. ..+++. +.... ...+++|+|||+|.+|+|+|..+++.+.+ ||+
T Consensus 129 ~d~lViATGs---~p~~p~i~---g~~~---~~~~~~~~~~~l--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtl 194 (451)
T PRK07846 129 ADQVVIAAGS---RPVIPPVI---ADSG---VRYHTSDTIMRL--PELPESLVIVGGGFIAAEFAHVFSALGVR---VTV 194 (451)
T ss_pred eCEEEEcCCC---CCCCCCCC---CcCC---ccEEchHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCe---EEE
Confidence 9999999994 58888888 6432 122332 22221 12479999999999999999999998754 999
Q ss_pred EEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCccccc
Q 009897 259 LFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQ 338 (523)
Q Consensus 259 ~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 338 (523)
+.|.+. ++|..+ ..
T Consensus 195 i~~~~~-ll~~~d-----------------------------------~~------------------------------ 208 (451)
T PRK07846 195 VNRSGR-LLRHLD-----------------------------------DD------------------------------ 208 (451)
T ss_pred EEcCCc-cccccC-----------------------------------HH------------------------------
Confidence 999775 223221 00
Q ss_pred ccCcceeecCcchhhhccCCCEEEEecC-ceEEecC--c--EEEcCCceeeeccEEEEecCCCCCcccccc--ccchhhh
Q 009897 339 ISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--G--LVIDGETTPLVTDIVIFATGYKSDEKLKNI--FKSTYFQ 411 (523)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~--v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~--~~~~~l~ 411 (523)
+.+.+.+.++ .+|+++.+. +.+++++ + +.+.+|++ +++|.||+|||++|+.+++.. .+.. +.
T Consensus 209 --------~~~~l~~l~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~-i~~D~vl~a~G~~pn~~~l~~~~~gl~-~~ 277 (451)
T PRK07846 209 --------ISERFTELAS-KRWDVRLGRNVVGVSQDGSGVTLRLDDGST-VEADVLLVATGRVPNGDLLDAAAAGVD-VD 277 (451)
T ss_pred --------HHHHHHHHHh-cCeEEEeCCEEEEEEEcCCEEEEEECCCcE-eecCEEEEEECCccCccccCchhcCce-EC
Confidence 0000111122 236666654 6666532 3 55668887 999999999999999876431 1111 11
Q ss_pred hhhcCCCcccccccccCCCCCeEEecccCCCC-chhhHHHHHHHHHHHHcCC
Q 009897 412 KQITGSSAPLYREGIHPQIPQLAILGYADSPS-ILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 412 ~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~ae~Qa~~~a~~l~g~ 462 (523)
+ .....-...+.++.||||++|.+.... ..+.+..|++.++.++.+.
T Consensus 278 ~----~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 278 E----DGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred C----CCcEeECCCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 0 000111122347899999999877543 4578999999999999865
No 42
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=4.3e-24 Score=225.21 Aligned_cols=314 Identities=17% Similarity=0.199 Sum_probs=186.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceee----CCCCCCCCCCCCCCCh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQF----SDFAWPNSVTETFPDH 103 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 103 (523)
.+||+||||||+|++||..|++.|.+|+|+|+. .+||+|.. +.|+..+......+.. ..+.+.. .....+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~--~~~~~~~ 80 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISV--SGPALDF 80 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccC--CCCccCH
Confidence 489999999999999999999999999999995 79999987 6676554322222111 0111110 0001122
Q ss_pred hHHHHH-------HH----HHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 104 NKVMEY-------LQ----AYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 104 ~~~~~y-------l~----~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
..+.++ +. ...++.++ .+..+ ++..++....++ .++.+.|.+.++.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g-~a~~i~~~~~~~-----------------~~~~~~v~~~~g~--- 137 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKI--DVFHG-IGRILGPSIFSP-----------------MPGTVSVETETGE--- 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEeCCCCCcC-----------------CceEEEEEeCCCc---
Confidence 233332 22 22333444 44443 555555431000 1235666654441
Q ss_pred cceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCcc-EEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcC
Q 009897 173 SATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGK-VLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNG 251 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~-~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 251 (523)
..++.||+||+|||+. |+.| | +.+ +.+. ++++.+.... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 138 --~~~~~~d~lViATGs~---p~~~--p---~~~-~~~~~~~~~~~~~~~--~~~~~~vvIIGgG~~G~E~A~~l~~~g~ 204 (472)
T PRK05976 138 --NEMIIPENLLIATGSR---PVEL--P---GLP-FDGEYVISSDEALSL--ETLPKSLVIVGGGVIGLEWASMLADFGV 204 (472)
T ss_pred --eEEEEcCEEEEeCCCC---CCCC--C---CCC-CCCceEEcchHhhCc--cccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 2378999999999954 5543 2 222 2222 4444333222 1237899999999999999999999865
Q ss_pred CccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCC
Q 009897 252 VRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIP 331 (523)
Q Consensus 252 ~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 331 (523)
+ ||++.|.+. ++|..+ .
T Consensus 205 ~---Vtli~~~~~-il~~~~-----------------------------------~------------------------ 221 (472)
T PRK05976 205 E---VTVVEAADR-ILPTED-----------------------------------A------------------------ 221 (472)
T ss_pred e---EEEEEecCc-cCCcCC-----------------------------------H------------------------
Confidence 4 999998765 333321 0
Q ss_pred CCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEe---cCcE---EEcCCc-eeeeccEEEEecCCCCCccccc
Q 009897 332 GHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFC---KNGL---VIDGET-TPLVTDIVIFATGYKSDEKLKN 403 (523)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~---~~~v---~l~dG~-~~~~~D~VI~ATG~~~~~~l~~ 403 (523)
.+...+.+.+++.+|+++.+. +.+++ ++++ .+.+|+ +.+++|.||+|||.+|+...+.
T Consensus 222 --------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~ 287 (472)
T PRK05976 222 --------------ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIG 287 (472)
T ss_pred --------------HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCC
Confidence 011112234455567777775 66665 3433 234664 2389999999999999875322
Q ss_pred cccchhhhhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCCC
Q 009897 404 IFKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 404 ~~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
.-... +. ...........+.++.||+|++|.+... .....+..|++.++..+.|..
T Consensus 288 l~~~~-~~---~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 288 LENTD-ID---VEGGFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred chhcC-ce---ecCCEEEECCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 10000 00 0001111112234578999999987643 356789999999999998863
No 43
>PLN02546 glutathione reductase
Probab=99.92 E-value=6.5e-25 Score=232.75 Aligned_cols=299 Identities=19% Similarity=0.259 Sum_probs=181.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEcc---------CCCCCccccc--ccCcccccCCcCcee----eCCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEA---------RSGIGGVWSQ--TIESTKLQTPKSFYQ----FSDFAWPN 94 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~---------~~~~GG~w~~--~~~~~~~~~~~~~~~----~~~~~~~~ 94 (523)
++||+||||||+|+.||..+++.|.+|+|+|+ ...+||+|.+ +.|+..+........ ...+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 48999999999999999999999999999996 2568999988 777766543222211 11111110
Q ss_pred CCCCCCCChhHHHHH-----------HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEE
Q 009897 95 SVTETFPDHNKVMEY-----------LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNV 163 (523)
Q Consensus 95 ~~~~~~~~~~~~~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 163 (523)
. .....+...+.++ +....++.++ .+..+ ++..++. .+|
T Consensus 159 ~-~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~G-~a~~vd~--------------------------~~V 208 (558)
T PLN02546 159 E-TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIEG-RGKIVDP--------------------------HTV 208 (558)
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEccC--------------------------CEE
Confidence 0 0011223333333 3333333333 22222 2222221 235
Q ss_pred EEeecccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHH
Q 009897 164 TVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVA 243 (523)
Q Consensus 164 ~~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a 243 (523)
.+ +++ .+.||+||||||+ .|..|++| |.+. ++++.+.... ...+++|+|||+|.+|+|+|
T Consensus 209 ~v-~G~-------~~~~D~LVIATGs---~p~~P~Ip---G~~~----v~~~~~~l~~--~~~~k~V~VIGgG~iGvE~A 268 (558)
T PLN02546 209 DV-DGK-------LYTARNILIAVGG---RPFIPDIP---GIEH----AIDSDAALDL--PSKPEKIAIVGGGYIALEFA 268 (558)
T ss_pred EE-CCE-------EEECCEEEEeCCC---CCCCCCCC---Chhh----ccCHHHHHhc--cccCCeEEEECCCHHHHHHH
Confidence 44 333 7899999999994 58888888 7542 2222222111 13579999999999999999
Q ss_pred HHHHHhcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCC
Q 009897 244 AEVANRNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFP 323 (523)
Q Consensus 244 ~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (523)
..++..+.+ ||++.|.+. +++..+ .
T Consensus 269 ~~L~~~g~~---Vtlv~~~~~-il~~~d------------------------------------~--------------- 293 (558)
T PLN02546 269 GIFNGLKSD---VHVFIRQKK-VLRGFD------------------------------------E--------------- 293 (558)
T ss_pred HHHHhcCCe---EEEEEeccc-cccccC------------------------------------H---------------
Confidence 999987654 999998765 223221 0
Q ss_pred cccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--Cc-E--EEcCCceeeeccEEEEecCCCC
Q 009897 324 LKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--NG-L--VIDGETTPLVTDIVIFATGYKS 397 (523)
Q Consensus 324 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~-v--~l~dG~~~~~~D~VI~ATG~~~ 397 (523)
.+.+.+.+.+++.+|+++.+. +.++.+ ++ + .+.+++. ..+|.||+|+|++|
T Consensus 294 ----------------------~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~-~~~D~Viva~G~~P 350 (558)
T PLN02546 294 ----------------------EVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTV-EGFSHVMFATGRKP 350 (558)
T ss_pred ----------------------HHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEE-EecCEEEEeecccc
Confidence 001111234445567777665 556642 22 3 3344443 55899999999999
Q ss_pred Cccccc--cccchhh-hhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 398 DEKLKN--IFKSTYF-QKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 398 ~~~l~~--~~~~~~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+..++. ..+...- +..+.. ..| +.++.||||++|.+... ...+.+..|++.+|..+.|.
T Consensus 351 nt~~L~le~~gl~~d~~G~I~V---D~~---l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 351 NTKNLGLEEVGVKMDKNGAIEV---DEY---SRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred CCCcCChhhcCCcCCCCCcEeE---CCC---ceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 976421 1111110 011111 122 34589999999988653 34578999999999999875
No 44
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.92 E-value=3.2e-25 Score=221.74 Aligned_cols=228 Identities=20% Similarity=0.301 Sum_probs=138.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-CceEEEccCCCCCccccc--ccCcccccCCcC-----------ceeeCCCCCCCC-
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG-FKPIVFEARSGIGGVWSQ--TIESTKLQTPKS-----------FYQFSDFAWPNS- 95 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~-----------~~~~~~~~~~~~- 95 (523)
+|+++||.||++|+.|..|.+.+ .++..||+.+.. .|.. ..|+.+++++.- -|+|..+-....
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 69999999999999999999976 899999987644 6876 457777766421 111110000000
Q ss_pred ------CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecc
Q 009897 96 ------VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEAR 169 (523)
Q Consensus 96 ------~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 169 (523)
....+|++.++.+|+++.+++++. .++++++|++|++....+ ...|.|++++.
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~------------------~~~~~V~~~~~- 139 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGD------------------EDLFRVTTRDS- 139 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETT------------------EEEEEEEEEET-
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCC------------------ccEEEEEEeec-
Confidence 035678999999999999999985 699999999999986000 03599998652
Q ss_pred cCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchh-hhcCCCEEEEEcCCCCHHHHHHHHHH
Q 009897 170 NVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAA-ELINGKRVTVIGFQKSAVDVAAEVAN 248 (523)
Q Consensus 170 ~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~-~~~~~k~V~VvG~G~sg~d~a~~l~~ 248 (523)
++...++.++.||+|+| ..|.+|+.. ........++|+.+|.... ....+++|+|||+|.||.|++..|.+
T Consensus 140 --~g~~~~~~ar~vVla~G---~~P~iP~~~---~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~ 211 (341)
T PF13434_consen 140 --DGDGETYRARNVVLATG---GQPRIPEWF---QDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLR 211 (341)
T ss_dssp --TS-EEEEEESEEEE-------EE---GGG---GGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHH
T ss_pred --CCCeeEEEeCeEEECcC---CCCCCCcch---hhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHh
Confidence 22344899999999999 458888743 1111236899999886542 24578999999999999999999999
Q ss_pred hcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCC
Q 009897 249 RNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNP 290 (523)
Q Consensus 249 ~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~ 290 (523)
.+.. .+|++++|++.+......++...++.....+.+...|
T Consensus 212 ~~~~-~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~ 252 (341)
T PF13434_consen 212 RGPE-AKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLP 252 (341)
T ss_dssp H-TT-EEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-
T ss_pred CCCC-cEEEEEECCCccCCCccccchhhhcCchhhhhhhcCC
Confidence 8764 5699999998744333333333344555555554444
No 45
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.92 E-value=4.5e-24 Score=234.38 Aligned_cols=295 Identities=20% Similarity=0.264 Sum_probs=178.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
...++|+|||||||||+||..|++.|++|+|||+.+.+||.+.+..|..++ + .++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rl-----------------------p-~evL 592 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRI-----------------------P-AELI 592 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccc-----------------------c-HHHH
Confidence 345899999999999999999999999999999999999988764432211 1 3444
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
.+..++++.+++ .+++++.| .++.. +.. ...||+|||||
T Consensus 593 ~~die~l~~~GV--e~~~gt~V-di~le-------------------------------~L~-------~~gYDaVILAT 631 (1019)
T PRK09853 593 QHDIEFVKAHGV--KFEFGCSP-DLTVE-------------------------------QLK-------NEGYDYVVVAI 631 (1019)
T ss_pred HHHHHHHHHcCC--EEEeCcee-EEEhh-------------------------------hhe-------eccCCEEEECc
Confidence 555566677787 78888776 22211 111 45699999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCch-----hhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLA-----AELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~-----~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
|+. .|..+.+| |.+. .++++.++... .....||+|+|||+|.+|+|+|..+.+.+.. ++||++.|+
T Consensus 632 GA~--~~~~l~Ip---G~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGa-keVTLVyRr 702 (1019)
T PRK09853 632 GAD--KNGGLKLE---GGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGV-EKVTVVYRR 702 (1019)
T ss_pred CCC--CCCCCCCC---CccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCC-ceEEEEEcc
Confidence 986 35555677 5431 23333322211 0123589999999999999999988877532 469999997
Q ss_pred ceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCc
Q 009897 263 VHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSC 342 (523)
Q Consensus 263 ~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 342 (523)
+.-.+|... +.+...... ...+.....
T Consensus 703 ~~~~MPA~~----------------------------------------eEle~Alee-----GVe~~~~~~-------- 729 (1019)
T PRK09853 703 TKQEMPAWR----------------------------------------EEYEEALED-----GVEFKELLN-------- 729 (1019)
T ss_pred CcccccccH----------------------------------------HHHHHHHHc-----CCEEEeCCc--------
Confidence 642333221 001111100 000000000
Q ss_pred ceeecCcchhhhcc-CCCEEEEecCceEEecCc----EEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhhcCC
Q 009897 343 MFTVLPRNFYDRVQ-GGGLSLMKSRSFTFCKNG----LVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGS 417 (523)
Q Consensus 343 ~~~~~~~~~~~~~~-~g~v~v~~~~i~~~~~~~----v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~ 417 (523)
. ..+. .|++.+..-.+...+..+ +...++.+ +++|.||+|+|++++..+++..+.. +.. .
T Consensus 730 -----p----~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~-I~aD~VIvAIG~~Pntelle~~GL~-ld~----~ 794 (1019)
T PRK09853 730 -----P----ESFDADGTLTCRVMKLGEPDESGRRRPVETGETVT-LEADTVITAIGEQVDTELLKANGIP-LDK----K 794 (1019)
T ss_pred -----e----EEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEE-EEeCEEEECCCCcCChhHHHhcCcc-ccC----C
Confidence 0 0111 233332211111112122 22233445 9999999999999997654322111 110 0
Q ss_pred CcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCCCC
Q 009897 418 SAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGNSN 464 (523)
Q Consensus 418 ~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~~~ 464 (523)
........+.++.|+||++|.... +.....|..|++.+|..|.+...
T Consensus 795 G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 795 GWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 011112344568899999998764 44667899999999999988765
No 46
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.92 E-value=9.5e-24 Score=222.40 Aligned_cols=304 Identities=16% Similarity=0.203 Sum_probs=181.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceee----CCCCCCCCCCCCCCChh
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQF----SDFAWPNSVTETFPDHN 104 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 104 (523)
+||+||||||+|++||.+|.+.|.+|+|+|+ +.+||+|.. ++|+..+......+.. ..+.+.. .....+.+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~--~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEV--ENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCC--CCCcCCHH
Confidence 7999999999999999999999999999999 889999886 5666543322222111 1111110 01112334
Q ss_pred HHHHHHHHHHH-----------HhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCc
Q 009897 105 KVMEYLQAYAA-----------HFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSS 173 (523)
Q Consensus 105 ~~~~yl~~~~~-----------~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 173 (523)
.+.++.+...+ +.++ .+..+ ++..++ ...+.|...++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~------------------------~~~~~v~~~~g~---- 127 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKV--TVIKG-EAKFLD------------------------PGTVLVTGENGE---- 127 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc------------------------CCEEEEecCCCc----
Confidence 44444333332 2233 22222 222221 133555443321
Q ss_pred ceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecC-CCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCC
Q 009897 174 ATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSM-NDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGV 252 (523)
Q Consensus 174 ~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~-~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 252 (523)
..+.||+||+|||. .|+.|++| . + +.+..+++. +.... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 128 --~~~~~d~lVlAtG~---~p~~~~~~-~-~---~~~~~~~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~- 194 (461)
T TIGR01350 128 --ETLTAKNIIIATGS---RPRSLPGP-F-D---FDGEVVITSTGALNL--KEVPESLVIIGGGVIGIEFASIFASLGS- 194 (461)
T ss_pred --EEEEeCEEEEcCCC---CCCCCCCC-C-C---CCCceEEcchHHhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCC-
Confidence 27899999999995 46666553 0 1 122233333 22211 1247899999999999999999998865
Q ss_pred ccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCC
Q 009897 253 RYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPG 332 (523)
Q Consensus 253 ~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 332 (523)
+||++.|.+. ++|..+ .
T Consensus 195 --~Vtli~~~~~-~l~~~~-----------------------------------~------------------------- 211 (461)
T TIGR01350 195 --KVTVIEMLDR-ILPGED-----------------------------------A------------------------- 211 (461)
T ss_pred --cEEEEEcCCC-CCCCCC-----------------------------------H-------------------------
Confidence 4999998765 333221 0
Q ss_pred CcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEe--cCcE--EEcCC--ceeeeccEEEEecCCCCCccc--cc
Q 009897 333 HSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFC--KNGL--VIDGE--TTPLVTDIVIFATGYKSDEKL--KN 403 (523)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~--~~~v--~l~dG--~~~~~~D~VI~ATG~~~~~~l--~~ 403 (523)
.+...+.+.+++.+|+++.+. +.+++ ++++ .+.+| .+ +++|.||+|||++|+... .+
T Consensus 212 -------------~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~-i~~D~vi~a~G~~p~~~~l~~~ 277 (461)
T TIGR01350 212 -------------EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETET-LTGEKVLVAVGRKPNTEGLGLE 277 (461)
T ss_pred -------------HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEE-EEeCEEEEecCCcccCCCCCcH
Confidence 011112234455567777764 66654 3344 34466 35 999999999999998752 11
Q ss_pred cccchhhhhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCCC
Q 009897 404 IFKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 404 ~~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
..... +. ......-...+.++.|+||++|.+... .....|..|++.+|..+.++.
T Consensus 278 ~~gl~-~~----~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 278 NLGVE-LD----ERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred hhCce-EC----CCCcEeeCCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 11111 00 000011112334578999999987643 346789999999999998754
No 47
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.92 E-value=2.1e-23 Score=219.47 Aligned_cols=316 Identities=16% Similarity=0.228 Sum_probs=185.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccC-----C---CCCccccc--ccCcccccCCcCceee----CCCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR-----S---GIGGVWSQ--TIESTKLQTPKSFYQF----SDFAWPNS 95 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-----~---~~GG~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~ 95 (523)
.+||+||||||+|+.+|..+++.|.+|+|+|+. . .+||+|.+ ++|+..+......+.- ..+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 479999999999999999999999999999973 1 58999987 7887765433222111 11111100
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCceEe-ccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcc
Q 009897 96 VTETFPDHNKVMEYLQAYAAHFNLFPSIKF-DTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSA 174 (523)
Q Consensus 96 ~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (523)
.....+...+.++..+..+++.-...-.+ ...|.-+.... .|.+.+ +|.+...+ ++
T Consensus 82 -~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-----------------~f~~~~--~v~v~~~~---g~ 138 (484)
T TIGR01438 82 -ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-----------------EFVDKH--RIKATNKK---GK 138 (484)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-----------------EEcCCC--EEEEeccC---CC
Confidence 00123445555555554443310000000 01111111110 000112 34443221 12
Q ss_pred eeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCcc
Q 009897 175 TEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRY 254 (523)
Q Consensus 175 ~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 254 (523)
.+.+.||+||+|||+ .|..|++| |.+.+ .+++.+.... ...+++|+|||+|.+|+|+|..+++.+.+
T Consensus 139 ~~~~~~d~lVIATGs---~p~~p~ip---G~~~~---~~~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~-- 205 (484)
T TIGR01438 139 EKIYSAERFLIATGE---RPRYPGIP---GAKEL---CITSDDLFSL--PYCPGKTLVVGASYVALECAGFLAGIGLD-- 205 (484)
T ss_pred ceEEEeCEEEEecCC---CCCCCCCC---Cccce---eecHHHhhcc--cccCCCEEEECCCHHHHHHHHHHHHhCCc--
Confidence 237999999999994 58888888 75432 2333322221 12367899999999999999999998754
Q ss_pred CEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCc
Q 009897 255 PCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHS 334 (523)
Q Consensus 255 ~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 334 (523)
||++.|. . ++|..+.
T Consensus 206 -Vtli~~~-~-~l~~~d~-------------------------------------------------------------- 220 (484)
T TIGR01438 206 -VTVMVRS-I-LLRGFDQ-------------------------------------------------------------- 220 (484)
T ss_pred -EEEEEec-c-cccccCH--------------------------------------------------------------
Confidence 9999873 2 3333210
Q ss_pred ccccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--Cc--EEEcCCc---eeeeccEEEEecCCCCCcccccc--
Q 009897 335 FLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--NG--LVIDGET---TPLVTDIVIFATGYKSDEKLKNI-- 404 (523)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~--v~l~dG~---~~~~~D~VI~ATG~~~~~~l~~~-- 404 (523)
.+.+.+.+.+++.+|+++.+. +.+++. ++ +++++|+ + +++|.||+|+|++|+..++.+
T Consensus 221 -----------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~-i~~D~vl~a~G~~pn~~~l~l~~ 288 (484)
T TIGR01438 221 -----------DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIE-EEYDTVLLAIGRDACTRKLNLEN 288 (484)
T ss_pred -----------HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceE-EEeCEEEEEecCCcCCCcCCccc
Confidence 011122234455567777664 445542 22 5566663 5 999999999999999865321
Q ss_pred ccchhhhhhhcCCCcccccccccCCCCCeEEecccCC--CCchhhHHHHHHHHHHHHcCC
Q 009897 405 FKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADS--PSILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 405 ~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~ae~Qa~~~a~~l~g~ 462 (523)
.+.. +.. ..........+.++.|+||++|.+.. ....+.|..|++.++..|.+.
T Consensus 289 ~gv~-~~~---~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 289 VGVK-INK---KTGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred ccce-ecC---cCCeEecCCCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence 1111 100 00001111234468999999998764 334678999999999999864
No 48
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.92 E-value=2.9e-23 Score=218.19 Aligned_cols=309 Identities=16% Similarity=0.153 Sum_probs=186.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee----eCCCCCCCC-CCCCCCCh
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ----FSDFAWPNS-VTETFPDH 103 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~ 103 (523)
++|+|||||++|+.+|..+.+.|.+|+++|+. .+||+|.. +.|+..+........ ...+.+... ......+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 58999999999999999999999999999986 58999987 666654322211110 011111100 00011223
Q ss_pred hHHHHHHH-----------HHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 104 NKVMEYLQ-----------AYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 104 ~~~~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
..+.++.. +..+++++ .+..+ ++..++... +.....|...++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~~~~~~--------------------~~~~v~V~~~~g---- 133 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGV--RVIAG-RGRLIDPGL--------------------GPHRVKVTTADG---- 133 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEeeccc--------------------CCCEEEEEeCCC----
Confidence 33433333 33344444 44443 444433111 013345544333
Q ss_pred cceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCC
Q 009897 173 SATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGV 252 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 252 (523)
+.+++.||+||+|||+ .|..|+.+ +.+. ..++++.+..+.. ..+++|+|||+|.+|+|+|..|++.+.+
T Consensus 134 -~~~~~~~d~lViATGs---~p~~~p~~---~~~~--~~v~~~~~~~~~~--~~~~~vvVIGgG~ig~E~A~~l~~~g~~ 202 (466)
T PRK07845 134 -GEETLDADVVLIATGA---SPRILPTA---EPDG--ERILTWRQLYDLD--ELPEHLIVVGSGVTGAEFASAYTELGVK 202 (466)
T ss_pred -ceEEEecCEEEEcCCC---CCCCCCCC---CCCC--ceEEeehhhhccc--ccCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 1236899999999995 46655443 2211 1244444433321 2368999999999999999999988754
Q ss_pred ccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCC
Q 009897 253 RYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPG 332 (523)
Q Consensus 253 ~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 332 (523)
||++.+.+. ++|..+.
T Consensus 203 ---Vtli~~~~~-~l~~~d~------------------------------------------------------------ 218 (466)
T PRK07845 203 ---VTLVSSRDR-VLPGEDA------------------------------------------------------------ 218 (466)
T ss_pred ---EEEEEcCCc-CCCCCCH------------------------------------------------------------
Confidence 999998765 3333210
Q ss_pred CcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEe--cCc--EEEcCCceeeeccEEEEecCCCCCcccccc--c
Q 009897 333 HSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFC--KNG--LVIDGETTPLVTDIVIFATGYKSDEKLKNI--F 405 (523)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~--~~~--v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~--~ 405 (523)
.+.+.+.+.+++.+|+++.+. +.+++ +++ +.+.+|++ +++|.||+|+|++|+...+.+ .
T Consensus 219 -------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~-l~~D~vl~a~G~~pn~~~l~l~~~ 284 (466)
T PRK07845 219 -------------DAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRT-VEGSHALMAVGSVPNTAGLGLEEA 284 (466)
T ss_pred -------------HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcE-EEecEEEEeecCCcCCCCCCchhh
Confidence 001112234455667777664 66664 333 55678887 999999999999999764221 1
Q ss_pred cchhh-hhhhcCCCcccccccccCCCCCeEEecccCCC-CchhhHHHHHHHHHHHHcCC
Q 009897 406 KSTYF-QKQITGSSAPLYREGIHPQIPQLAILGYADSP-SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 406 ~~~~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+...- ...+.. . ..+.++.||||++|.+... ...+.|..|++.++.++.|.
T Consensus 285 gl~~~~~G~i~V---d---~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 285 GVELTPSGHITV---D---RVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred CceECCCCcEeE---C---CCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 11100 011111 1 2234689999999988754 34688999999999998875
No 49
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.92 E-value=1.4e-23 Score=219.32 Aligned_cols=164 Identities=27% Similarity=0.337 Sum_probs=113.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHH
Q 009897 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKV 106 (523)
Q Consensus 27 ~~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (523)
++..++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+..|. +....++
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~------------------------~~~~~~~ 185 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPE------------------------FRLPKEI 185 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCC------------------------ccCCHHH
Confidence 3456899999999999999999999999999999999899887542211 1111355
Q ss_pred HHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEe
Q 009897 107 MEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILC 186 (523)
Q Consensus 107 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlA 186 (523)
.....+..+++++ .+++++.| . ..|++.+. ...||+||+|
T Consensus 186 ~~~~~~~l~~~gv--~~~~~~~v------~------------------------~~v~~~~~--------~~~yd~viiA 225 (449)
T TIGR01316 186 VVTEIKTLKKLGV--TFRMNFLV------G------------------------KTATLEEL--------FSQYDAVFIG 225 (449)
T ss_pred HHHHHHHHHhCCc--EEEeCCcc------C------------------------CcCCHHHH--------HhhCCEEEEe
Confidence 5555555666777 67776543 1 12333222 2469999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCccEEecCCCCc-------------hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCc
Q 009897 187 IGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL-------------AAELINGKRVTVIGFQKSAVDVAAEVANRNGVR 253 (523)
Q Consensus 187 tG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~-------------~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 253 (523)
||+. .|+.|++| |.+. .+ +++..++.. ......+|+|+|||+|.+|+|+|..+++.+.+
T Consensus 226 tGa~--~p~~~~ip---G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~- 297 (449)
T TIGR01316 226 TGAG--LPKLMNIP---GEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE- 297 (449)
T ss_pred CCCC--CCCcCCCC---CCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE-
Confidence 9963 47888888 6542 22 233222110 00124689999999999999999999998764
Q ss_pred cCEEEEEeece
Q 009897 254 YPCTLLFKTVH 264 (523)
Q Consensus 254 ~~Vt~~~r~~~ 264 (523)
||++.|++.
T Consensus 298 --Vtlv~~~~~ 306 (449)
T TIGR01316 298 --VHCLYRRTR 306 (449)
T ss_pred --EEEEeecCc
Confidence 999998754
No 50
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=4.8e-23 Score=217.15 Aligned_cols=309 Identities=17% Similarity=0.217 Sum_probs=182.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEcc------CCCCCccccc--ccCcccccCCcCcee-e----CCCCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEA------RSGIGGVWSQ--TIESTKLQTPKSFYQ-F----SDFAWPNSV 96 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~------~~~~GG~w~~--~~~~~~~~~~~~~~~-~----~~~~~~~~~ 96 (523)
.+||+||||||+|++||..+++.|.+|+|+|+ ...+||+|.+ ++|...+......+. + ..+.....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 48999999999999999999999999999998 4679999987 556543221111110 0 11111100
Q ss_pred CCCCCChhHHHHHHH-----------HHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEE
Q 009897 97 TETFPDHNKVMEYLQ-----------AYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTV 165 (523)
Q Consensus 97 ~~~~~~~~~~~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 165 (523)
..-.+..++.+... ...+..++ .+.. .++..++... ..++|.+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~~~~~~----------------------~~~~v~v 136 (475)
T PRK06327 83 -GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TVLK-GRGSFVGKTD----------------------AGYEIKV 136 (475)
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEecCCC----------------------CCCEEEE
Confidence 00112233333322 22233333 3332 3444444432 3477877
Q ss_pred eecccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHH
Q 009897 166 QEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAE 245 (523)
Q Consensus 166 ~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~ 245 (523)
..+. + .++.||+||+|||+. |+.| | +.. +.+..+++.+.... ....+++|+|||+|.+|+|+|..
T Consensus 137 ~~~~---~--~~~~~d~lViATGs~---p~~~--p---~~~-~~~~~~~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~ 201 (475)
T PRK06327 137 TGED---E--TVITAKHVIIATGSE---PRHL--P---GVP-FDNKIILDNTGALN-FTEVPKKLAVIGAGVIGLELGSV 201 (475)
T ss_pred ecCC---C--eEEEeCEEEEeCCCC---CCCC--C---CCC-CCCceEECcHHHhc-ccccCCeEEEECCCHHHHHHHHH
Confidence 5321 1 279999999999954 5433 2 222 22333443321111 11247999999999999999999
Q ss_pred HHHhcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcc
Q 009897 246 VANRNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLK 325 (523)
Q Consensus 246 l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (523)
+++.+.+ ||++.|.+. ++|..+
T Consensus 202 l~~~g~~---Vtli~~~~~-~l~~~d------------------------------------------------------ 223 (475)
T PRK06327 202 WRRLGAE---VTILEALPA-FLAAAD------------------------------------------------------ 223 (475)
T ss_pred HHHcCCe---EEEEeCCCc-cCCcCC------------------------------------------------------
Confidence 9988754 999998775 223211
Q ss_pred cCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecC--c--EEEcC--C--ceeeeccEEEEecCCC
Q 009897 326 KYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--G--LVIDG--E--TTPLVTDIVIFATGYK 396 (523)
Q Consensus 326 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~--v~l~d--G--~~~~~~D~VI~ATG~~ 396 (523)
+.+.+.+.+.+++.+|+++.+. +.+++.+ + +.+.+ | .+ +++|.||+|+|++
T Consensus 224 -------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~-i~~D~vl~a~G~~ 283 (475)
T PRK06327 224 -------------------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQT-LEVDKLIVSIGRV 283 (475)
T ss_pred -------------------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeE-EEcCEEEEccCCc
Confidence 0011122234445567777764 6666543 3 44444 3 34 8999999999999
Q ss_pred CCcccccc--ccchhhhhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCCC
Q 009897 397 SDEKLKNI--FKSTYFQKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 397 ~~~~l~~~--~~~~~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
|+...+.. .+.. +.. ....... ..+.++.|+||++|.+.. ....+.|..|++.+|..+.|+.
T Consensus 284 p~~~~l~~~~~g~~-~~~---~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 284 PNTDGLGLEAVGLK-LDE---RGFIPVD-DHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred cCCCCCCcHhhCce-eCC---CCeEeEC-CCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 99753211 1111 000 0000111 123467899999998764 3356789999999999998853
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=99.91 E-value=3.2e-23 Score=216.85 Aligned_cols=167 Identities=25% Similarity=0.350 Sum_probs=117.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHH
Q 009897 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKV 106 (523)
Q Consensus 27 ~~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (523)
+...++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+..|. +.+ +.+++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~--------------~~l---------~~~~~ 193 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE--------------FRL---------PKETV 193 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCC--------------ccC---------CccHH
Confidence 3456899999999999999999999999999999999999988642221 111 12346
Q ss_pred HHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEe
Q 009897 107 MEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILC 186 (523)
Q Consensus 107 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlA 186 (523)
..+..++++++++ .+++++.|. . .+++.+.. ..+.||+||+|
T Consensus 194 ~~~~~~~~~~~gv--~i~~~~~v~---~---------------------------~v~~~~~~------~~~~~d~viiA 235 (464)
T PRK12831 194 VKKEIENIKKLGV--KIETNVVVG---K---------------------------TVTIDELL------EEEGFDAVFIG 235 (464)
T ss_pred HHHHHHHHHHcCC--EEEcCCEEC---C---------------------------cCCHHHHH------hccCCCEEEEe
Confidence 6677777888888 788887552 0 12222211 14569999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCccEEecCCCCch------------hhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCcc
Q 009897 187 IGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLA------------AELINGKRVTVIGFQKSAVDVAAEVANRNGVRY 254 (523)
Q Consensus 187 tG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~------------~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 254 (523)
||+. .|+.|++| |.+. .| ++...++... .....+|+|+|||+|.+|+|+|..+...+.+
T Consensus 236 tGa~--~~~~l~ip---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~-- 306 (464)
T PRK12831 236 SGAG--LPKFMGIP---GENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE-- 306 (464)
T ss_pred CCCC--CCCCCCCC---CcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE--
Confidence 9973 47778888 6542 11 2222211100 0124689999999999999999999998864
Q ss_pred CEEEEEeece
Q 009897 255 PCTLLFKTVH 264 (523)
Q Consensus 255 ~Vt~~~r~~~ 264 (523)
||++.|+..
T Consensus 307 -Vtlv~r~~~ 315 (464)
T PRK12831 307 -VHIVYRRSE 315 (464)
T ss_pred -EEEEeecCc
Confidence 999998653
No 52
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.91 E-value=2e-23 Score=224.14 Aligned_cols=317 Identities=16% Similarity=0.180 Sum_probs=185.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccC-CCCCccccc--ccCcccccCCcCcee------------eC--CCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR-SGIGGVWSQ--TIESTKLQTPKSFYQ------------FS--DFAW 92 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~GG~w~~--~~~~~~~~~~~~~~~------------~~--~~~~ 92 (523)
.+||+|||+|++|+.||..+++.|.+|+|||+. ..+||+|.+ +.|+..+......+. .. .||-
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 479999999999999999999999999999974 469999887 777766533322211 11 0110
Q ss_pred CC-------CC--CCCCCChhHHHHHHHHHHHHhCC--CC-----ceEeccEEEEEEeCCCCCcccccccccCCCCCCCC
Q 009897 93 PN-------SV--TETFPDHNKVMEYLQAYAAHFNL--FP-----SIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFS 156 (523)
Q Consensus 93 ~~-------~~--~~~~~~~~~~~~yl~~~~~~~~l--~~-----~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (523)
.. .+ ...-.+...+.++.+...+++.- .. .+....+.+.+.... +.|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~----------------a~f~ 259 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER----------------GHIV 259 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE----------------EEEe
Confidence 00 00 01123566777777766665421 00 111112223333221 0000
Q ss_pred CCCCeEEEEe-ecccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcC
Q 009897 157 SSGKWNVTVQ-EARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGF 235 (523)
Q Consensus 157 ~~~~~~v~~~-~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~ 235 (523)
+..+|.+. ++. ++.||+||||||+ .|.+|+++ +.+. ..++.+.+.... + ..+++|+|||+
T Consensus 260 --~~~~v~v~~~g~-------~i~ad~lIIATGS---~P~~P~~~---~~~~--~~V~ts~d~~~l-~-~lpk~VvIVGg 320 (659)
T PTZ00153 260 --DKNTIKSEKSGK-------EFKVKNIIIATGS---TPNIPDNI---EVDQ--KSVFTSDTAVKL-E-GLQNYMGIVGM 320 (659)
T ss_pred --cCCeEEEccCCE-------EEECCEEEEcCCC---CCCCCCCC---CCCC--CcEEehHHhhhh-h-hcCCceEEECC
Confidence 12334432 222 7899999999994 57777655 3322 124444332222 1 23789999999
Q ss_pred CCCHHHHHHHHHHhcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHH
Q 009897 236 QKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVE 315 (523)
Q Consensus 236 G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (523)
|.+|+|+|..++..+.+ ||++.+.+. ++|..+. .
T Consensus 321 G~iGvE~A~~l~~~G~e---VTLIe~~~~-ll~~~d~------------------------------------e------ 354 (659)
T PTZ00153 321 GIIGLEFMDIYTALGSE---VVSFEYSPQ-LLPLLDA------------------------------------D------ 354 (659)
T ss_pred CHHHHHHHHHHHhCCCe---EEEEeccCc-ccccCCH------------------------------------H------
Confidence 99999999999988754 999999876 3333210 0
Q ss_pred HHHHhcCCcccCCCCCCCcccccccCcceeecCcchhhh-ccCCCEEEEecC-ceEEecCc----EEE--cC-------C
Q 009897 316 SCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDR-VQGGGLSLMKSR-SFTFCKNG----LVI--DG-------E 380 (523)
Q Consensus 316 ~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~v~~~~-i~~~~~~~----v~l--~d-------G 380 (523)
+...+.+. +++.+|+++.+. +.+++++. +.+ .+ +
T Consensus 355 -------------------------------is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~ 403 (659)
T PTZ00153 355 -------------------------------VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDG 403 (659)
T ss_pred -------------------------------HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccc
Confidence 00001111 233456666664 55665321 332 21 1
Q ss_pred --------ceeeeccEEEEecCCCCCcccccc--ccchhhhhhhcCCCcccccccc---cCCCCCeEEecccCCC-Cchh
Q 009897 381 --------TTPLVTDIVIFATGYKSDEKLKNI--FKSTYFQKQITGSSAPLYREGI---HPQIPQLAILGYADSP-SILR 446 (523)
Q Consensus 381 --------~~~~~~D~VI~ATG~~~~~~l~~~--~~~~~l~~~~~~~~~~ly~~~~---~~~~p~l~~iG~~~~~-~~~~ 446 (523)
++ +++|.||+|||++|+...+.+ .+...-+..+.. .-|.++. +..+|+||++|.+... ...+
T Consensus 404 ~~~~~~~~~~-i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~V---De~lqTs~~~~~~v~~IYAiGDv~g~~~La~ 479 (659)
T PTZ00153 404 PKKNMNDIKE-TYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSV---DEHLRVLREDQEVYDNIFCIGDANGKQMLAH 479 (659)
T ss_pred cccccccceE-EEcCEEEEEECcccCCccCCchhcCCcccCCEEeE---CCCCCcCCCCCCCCCCEEEEEecCCCccCHH
Confidence 25 999999999999999764321 111100111111 2233332 1127999999988753 3458
Q ss_pred hHHHHHHHHHHHHcCC
Q 009897 447 TTEMRSKCLAHFLAGN 462 (523)
Q Consensus 447 ~ae~Qa~~~a~~l~g~ 462 (523)
.|..||+.++.+|.|+
T Consensus 480 ~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 480 TASHQALKVVDWIEGK 495 (659)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8999999999999886
No 53
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=5.4e-23 Score=215.91 Aligned_cols=307 Identities=12% Similarity=0.153 Sum_probs=180.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceee----CCCCCCCCCCCCCCChhH
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQF----SDFAWPNSVTETFPDHNK 105 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 105 (523)
+|+||||||+|++||..+++.|.+|+|+|+. .+||+|.+ +.|+..+......+.. ..+...........+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 7999999999999999999999999999985 58999876 6776554222111110 111111000011234455
Q ss_pred HHHHHHHHHHHh--CCC-----CceE-eccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeE
Q 009897 106 VMEYLQAYAAHF--NLF-----PSIK-FDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEA 177 (523)
Q Consensus 106 ~~~yl~~~~~~~--~l~-----~~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (523)
+.++..+..+++ ++. ..+. +..++..++ .....|+..++ .++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~------------------------~~~v~v~~~~~------~~~ 130 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET------------------------DHRVRVEYGDK------EEV 130 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc------------------------CCEEEEeeCCC------cEE
Confidence 555554444432 110 0111 111222121 12344443222 126
Q ss_pred EEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEE
Q 009897 178 YQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCT 257 (523)
Q Consensus 178 ~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt 257 (523)
+.||+||||||+ .|..|+++ +.+.. .++++.+.... ...+++|+|||+|.+|+|+|..+.+.+. +||
T Consensus 131 ~~~d~lviATGs---~p~~~p~~---~~~~~--~v~~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~---~Vt 197 (458)
T PRK06912 131 VDAEQFIIAAGS---EPTELPFA---PFDGK--WIINSKHAMSL--PSIPSSLLIVGGGVIGCEFASIYSRLGT---KVT 197 (458)
T ss_pred EECCEEEEeCCC---CCCCCCCC---CCCCC--eEEcchHHhCc--cccCCcEEEECCCHHHHHHHHHHHHcCC---eEE
Confidence 899999999995 46666565 43211 24444333222 1236899999999999999999998765 499
Q ss_pred EEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccc
Q 009897 258 LLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLN 337 (523)
Q Consensus 258 ~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 337 (523)
++.|.+. ++|..+ .
T Consensus 198 li~~~~~-ll~~~d-----------------------------------~------------------------------ 211 (458)
T PRK06912 198 IVEMAPQ-LLPGED-----------------------------------E------------------------------ 211 (458)
T ss_pred EEecCCC-cCcccc-----------------------------------H------------------------------
Confidence 9998765 223221 0
Q ss_pred cccCcceeecCcchhhhccCCCEEEEecC-ceEEecCc--EEEc-CCc-eeeeccEEEEecCCCCCcccccc--ccchhh
Q 009897 338 QISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNG--LVID-GET-TPLVTDIVIFATGYKSDEKLKNI--FKSTYF 410 (523)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~--v~l~-dG~-~~~~~D~VI~ATG~~~~~~l~~~--~~~~~l 410 (523)
.+.+.+.+.+++.+|+++.+. +.+++.++ +.+. +|+ ..+++|.||+|||.+|+...+.+ .+....
T Consensus 212 --------e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~ 283 (458)
T PRK06912 212 --------DIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFS 283 (458)
T ss_pred --------HHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceec
Confidence 011112234455567777765 66665432 4443 443 23899999999999998753221 110100
Q ss_pred hhhhcCCCcccccccccCCCCCeEEecccCC-CCchhhHHHHHHHHHHHHcCC
Q 009897 411 QKQITGSSAPLYREGIHPQIPQLAILGYADS-PSILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 411 ~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+..+.. ..| +.++.||+|++|.+.. ....+.|..|++.+|..+.|.
T Consensus 284 ~~gi~V---d~~---~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 284 NKGISV---NEH---MQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred CCCEEe---CCC---eecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 100111 122 3357899999998765 335678999999999999885
No 54
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.91 E-value=4.2e-23 Score=216.67 Aligned_cols=164 Identities=27% Similarity=0.390 Sum_probs=115.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
...++|+||||||+||++|..|++.|++|+|||+.+.+||.+....|. +....++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~------------------------~~~~~~~~ 193 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPE------------------------FRLPKDIV 193 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCC------------------------ccCCHHHH
Confidence 455899999999999999999999999999999999999876542221 11124666
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
.+..++.+++++ .+++++.|.. .+++.+. .+.||+||+||
T Consensus 194 ~~~~~~l~~~gv--~~~~~~~v~~------------------------------~v~~~~~--------~~~~d~vvlAt 233 (457)
T PRK11749 194 DREVERLLKLGV--EIRTNTEVGR------------------------------DITLDEL--------RAGYDAVFIGT 233 (457)
T ss_pred HHHHHHHHHcCC--EEEeCCEECC------------------------------ccCHHHH--------HhhCCEEEEcc
Confidence 777777777887 7777766510 1111111 36799999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCch-------hhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEE
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLA-------AELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLF 260 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~-------~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~ 260 (523)
|+. .|+.+.+| |.+. . .+++..++... .....+++|+|||+|.+|+|+|..++..+. ++||++.
T Consensus 234 Ga~--~~~~~~i~---G~~~-~-gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~--~~Vtlv~ 304 (457)
T PRK11749 234 GAG--LPRFLGIP---GENL-G-GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA--ESVTIVY 304 (457)
T ss_pred CCC--CCCCCCCC---CccC-C-CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC--CeEEEee
Confidence 974 36666777 6542 1 23333322211 012368999999999999999999998764 3599999
Q ss_pred eece
Q 009897 261 KTVH 264 (523)
Q Consensus 261 r~~~ 264 (523)
|++.
T Consensus 305 ~~~~ 308 (457)
T PRK11749 305 RRGR 308 (457)
T ss_pred ecCc
Confidence 8764
No 55
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.91 E-value=2.1e-23 Score=213.13 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=177.4
Q ss_pred cEEEECCChHHHHHHHHHHHC---CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 32 KIAIIGAGVSGLLACKYTLEN---GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
+|+|||||++|+.+|.+|+++ +.+|+|+|+++.. .|... + +. ......+.+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~------~~~~~-------------~--~~-~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT------PYSGM-------------L--PG-MIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC------cccch-------------h--hH-HHheeCCHHHhcc
Confidence 589999999999999999753 6899999987643 00000 0 00 0011123345666
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
.++++++++++ ++.. .+|++++... ..|.+.+++ ++.||+||+|||
T Consensus 59 ~~~~~~~~~gv--~~~~-~~v~~id~~~------------------------~~V~~~~g~-------~~~yD~LviAtG 104 (364)
T TIGR03169 59 DLRRLARQAGA--RFVI-AEATGIDPDR------------------------RKVLLANRP-------PLSYDVLSLDVG 104 (364)
T ss_pred cHHHHHHhcCC--EEEE-EEEEEEeccc------------------------CEEEECCCC-------cccccEEEEccC
Confidence 66777777787 5555 4898888754 367777665 789999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecCC---CCc----hhh----hcCCCEEEEEcCCCCHHHHHHHHHHhcCC---cc
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSMN---DDL----AAE----LINGKRVTVIGFQKSAVDVAAEVANRNGV---RY 254 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~~---~~~----~~~----~~~~k~V~VvG~G~sg~d~a~~l~~~~~~---~~ 254 (523)
+ .|..|.+| |.... ++.... ... ..+ ...+++|+|||+|.+|+|+|..|+..... ..
T Consensus 105 ~---~~~~~~i~---g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~ 175 (364)
T TIGR03169 105 S---TTPLSGVE---GAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRG 175 (364)
T ss_pred C---CCCCCCCC---ccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 57778787 63321 111110 000 001 12367999999999999999999864211 13
Q ss_pred CEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCc
Q 009897 255 PCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHS 334 (523)
Q Consensus 255 ~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 334 (523)
+|+++ +.+. +++...
T Consensus 176 ~V~li-~~~~-~l~~~~--------------------------------------------------------------- 190 (364)
T TIGR03169 176 QVTLI-AGAS-LLPGFP--------------------------------------------------------------- 190 (364)
T ss_pred eEEEE-eCCc-ccccCC---------------------------------------------------------------
Confidence 59988 4332 222210
Q ss_pred ccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecCcEEEcCCceeeeccEEEEecCCCCCccccccccchhhhhh
Q 009897 335 FLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNGLVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQ 413 (523)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~ 413 (523)
+.+...+.+.+++.+|+++.+. +.+++++++++.+|++ +++|.||+|+|.+++..+.. .+.. ++.
T Consensus 191 ----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~l~~-~gl~-~~~- 256 (364)
T TIGR03169 191 ----------AKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRT-LPADAILWATGARAPPWLAE-SGLP-LDE- 256 (364)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCE-EecCEEEEccCCChhhHHHH-cCCC-cCC-
Confidence 0011122344556678888875 7788877899999988 99999999999998753321 1111 110
Q ss_pred hcCCCcccccccccCCCCCeEEecccCCCC------chhhHHHHHHHHHHHHcCC
Q 009897 414 ITGSSAPLYREGIHPQIPQLAILGYADSPS------ILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 414 ~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~------~~~~ae~Qa~~~a~~l~g~ 462 (523)
......-.....++.||||++|.+.... ....|..||+.+|+.|...
T Consensus 257 --~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~ 309 (364)
T TIGR03169 257 --DGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRAS 309 (364)
T ss_pred --CCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHH
Confidence 0000111112224789999999875321 2356888999888777543
No 56
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.90 E-value=8.7e-23 Score=213.58 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=179.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCcee----eCCCCCCCCCCCCCCCh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQ----FSDFAWPNSVTETFPDH 103 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 103 (523)
.+||+|||+||+|..||.. ..|.+|+++|+ ..+||+|.+ +.|+..+......++ ...+.+.. .....+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDA--EIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeC--CCCccCH
Confidence 3799999999999998654 46999999998 579999988 778776543322221 11111110 0112345
Q ss_pred hHHHHHHHH-HHHHhCCC-CceE-----eccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCccee
Q 009897 104 NKVMEYLQA-YAAHFNLF-PSIK-----FDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATE 176 (523)
Q Consensus 104 ~~~~~yl~~-~~~~~~l~-~~i~-----~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (523)
.++.++... ..+...-. .... .+.+|..=...- .+.++|.+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---------------------~~~~~V~~~~g~------- 128 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARF---------------------VGPRTLRTGDGE------- 128 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEE---------------------ecCCEEEECCCc-------
Confidence 566665544 22221100 0010 122222111100 123667776554
Q ss_pred EEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCcc-EEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccC
Q 009897 177 AYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGK-VLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYP 255 (523)
Q Consensus 177 ~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~-~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 255 (523)
++.||+||+|||+ .|..|+++ +.. +. +..+.+.... ...+++|+|||+|.+|+|+|..++..+.+
T Consensus 129 ~~~~d~lIiATGs---~p~~p~~~---~~~---~~~~~~~~~~~~l--~~~~k~vvVIGgG~ig~E~A~~l~~~G~~--- 194 (452)
T TIGR03452 129 EITGDQIVIAAGS---RPYIPPAI---ADS---GVRYHTNEDIMRL--PELPESLVIVGGGYIAAEFAHVFSALGTR--- 194 (452)
T ss_pred EEEeCEEEEEECC---CCCCCCCC---CCC---CCEEEcHHHHHhh--hhcCCcEEEECCCHHHHHHHHHHHhCCCc---
Confidence 7899999999995 47777533 211 22 2222222211 12378999999999999999999988754
Q ss_pred EEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcc
Q 009897 256 CTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSF 335 (523)
Q Consensus 256 Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 335 (523)
||++.+.+. +++..+ .. ...
T Consensus 195 Vtli~~~~~-ll~~~d-----------------------------------~~-~~~----------------------- 214 (452)
T TIGR03452 195 VTIVNRSTK-LLRHLD-----------------------------------ED-ISD----------------------- 214 (452)
T ss_pred EEEEEccCc-cccccC-----------------------------------HH-HHH-----------------------
Confidence 999998765 223221 00 000
Q ss_pred cccccCcceeecCcchhhhccCCCEEEEecC-ceEEec--Cc--EEEcCCceeeeccEEEEecCCCCCcccccc--ccch
Q 009897 336 LNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--NG--LVIDGETTPLVTDIVIFATGYKSDEKLKNI--FKST 408 (523)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~--v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~--~~~~ 408 (523)
.+.+.++ .+|+++.+. +.+++. ++ +.+.+|++ +++|.||+|+|++|+..++.. .+..
T Consensus 215 --------------~l~~~~~-~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~-i~~D~vl~a~G~~pn~~~l~~~~~gl~ 278 (452)
T TIGR03452 215 --------------RFTEIAK-KKWDIRLGRNVTAVEQDGDGVTLTLDDGST-VTADVLLVATGRVPNGDLLDAEAAGVE 278 (452)
T ss_pred --------------HHHHHHh-cCCEEEeCCEEEEEEEcCCeEEEEEcCCCE-EEcCEEEEeeccCcCCCCcCchhcCee
Confidence 0111122 236666554 566652 33 45567877 999999999999999875432 1111
Q ss_pred hh-hhhhcCCCcccccccccCCCCCeEEecccCCCC-chhhHHHHHHHHHHHHcCC
Q 009897 409 YF-QKQITGSSAPLYREGIHPQIPQLAILGYADSPS-ILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 409 ~l-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~ae~Qa~~~a~~l~g~ 462 (523)
.- +..+.. . ..+.++.|+||++|.+.... ..+.+..|++.+|..+.|.
T Consensus 279 ~~~~G~i~v---d---~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 279 VDEDGRIKV---D---EYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred ECCCCcEee---C---CCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 00 111111 1 22347899999999887543 4578999999999999875
No 57
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=2.1e-22 Score=190.25 Aligned_cols=313 Identities=20% Similarity=0.276 Sum_probs=202.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccc-cCCcCce---eeCCCCCCCCCCCCCCCh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKL-QTPKSFY---QFSDFAWPNSVTETFPDH 103 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 103 (523)
.+|.+|||||-+|+++|+..++.|.++.++|..-.+||+|.. +.|.... +.....- .-.++.|+.. ...-.+.
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~-~~~~fdW 98 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN-EEGSFDW 98 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc-cccCCcH
Confidence 489999999999999999999999999999998799999987 4443322 1111111 1113334321 1222344
Q ss_pred hHHHHHHHHHHHHhC-CCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCE
Q 009897 104 NKVMEYLQAYAAHFN-LFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDF 182 (523)
Q Consensus 104 ~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 182 (523)
..+.+--.+|..+++ +.++..-+..|.-++... .|..++...|..+++. ...+++++
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a-----------------~f~~~~~v~V~~~d~~-----~~~Ytak~ 156 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA-----------------RFVSPGEVEVEVNDGT-----KIVYTAKH 156 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE-----------------EEcCCCceEEEecCCe-----eEEEecce
Confidence 556666666666653 433444445555454332 2233456677776663 23589999
Q ss_pred EEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 183 VILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 183 vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
++|||| +.|.+|+|| |.+. .+.|..+.+.. ..+||++|||+|.+|+|+|.-++..+.. ++++.|.
T Consensus 157 iLIAtG---g~p~~PnIp---G~E~----gidSDgff~Le--e~Pkr~vvvGaGYIavE~Agi~~gLgse---thlfiR~ 221 (478)
T KOG0405|consen 157 ILIATG---GRPIIPNIP---GAEL----GIDSDGFFDLE--EQPKRVVVVGAGYIAVEFAGIFAGLGSE---THLFIRQ 221 (478)
T ss_pred EEEEeC---CccCCCCCC---chhh----ccccccccchh--hcCceEEEEccceEEEEhhhHHhhcCCe---eEEEEec
Confidence 999999 568888888 7662 45566666542 3489999999999999999999999865 9999997
Q ss_pred ceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCc
Q 009897 263 VHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSC 342 (523)
Q Consensus 263 ~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 342 (523)
.. ++..++
T Consensus 222 ~k-vLR~FD----------------------------------------------------------------------- 229 (478)
T KOG0405|consen 222 EK-VLRGFD----------------------------------------------------------------------- 229 (478)
T ss_pred ch-hhcchh-----------------------------------------------------------------------
Confidence 64 111110
Q ss_pred ceeecCcchhhhccCCCEEEEecC-ceEEecC--c---EEEcCCceeeeccEEEEecCCCCCccccccccch--hhh-hh
Q 009897 343 MFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN--G---LVIDGETTPLVTDIVIFATGYKSDEKLKNIFKST--YFQ-KQ 413 (523)
Q Consensus 343 ~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~--~---v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~--~l~-~~ 413 (523)
..+++..-+.+...+|++|+.. ++++..+ + +..+.|+. ..+|.++||||.+|+..-+.+.... ..+ ..
T Consensus 230 --~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i-~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~ 306 (478)
T KOG0405|consen 230 --EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTI-EDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGA 306 (478)
T ss_pred --HHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecccc-ccccEEEEEecCCCCcccccchhcceeeCCCCC
Confidence 1133334455666668888775 5554322 2 44456655 6799999999999986432211000 000 00
Q ss_pred hcCCCcccccccccCCCCCeEEecccCCCCc-hhhHHHHHHHHHHHHcC
Q 009897 414 ITGSSAPLYREGIHPQIPQLAILGYADSPSI-LRTTEMRSKCLAHFLAG 461 (523)
Q Consensus 414 ~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~~-~~~ae~Qa~~~a~~l~g 461 (523)
+.. ..|.+ ++.|+|+.+|....-.. -+.|-+.++.+|.-+-|
T Consensus 307 Iiv---DeYq~---Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 307 IIV---DEYQN---TNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred EEE---ecccc---CCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 111 34555 58999999998776443 47888889988887755
No 58
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.90 E-value=2.1e-22 Score=224.80 Aligned_cols=164 Identities=24% Similarity=0.308 Sum_probs=118.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
+..++|+|||||||||+||..|++.|++|+|||+.+.+||...+..|..+ -..++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~r------------------------lp~~vi 359 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFR------------------------LPNQLI 359 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCc------------------------ChHHHH
Confidence 34699999999999999999999999999999999999998875333211 124566
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
+...+..+.+|+ .++.|+.|- ..+++.+.. ...||+||+||
T Consensus 360 ~~~i~~l~~~Gv--~f~~n~~vG------------------------------~dit~~~l~-------~~~yDAV~LAt 400 (944)
T PRK12779 360 DDVVEKIKLLGG--RFVKNFVVG------------------------------KTATLEDLK-------AAGFWKIFVGT 400 (944)
T ss_pred HHHHHHHHhhcC--eEEEeEEec------------------------------cEEeHHHhc-------cccCCEEEEeC
Confidence 666667777887 777776541 234444432 45799999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCc--------------hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCc
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL--------------AAELINGKRVTVIGFQKSAVDVAAEVANRNGVR 253 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~--------------~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~ 253 (523)
|+. .|+.+++| |.+. .| +....+|.. ......||+|+|||+|.+|+|+|..+.+.+..
T Consensus 401 GA~--~pr~l~Ip---G~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~- 472 (944)
T PRK12779 401 GAG--LPTFMNVP---GEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN- 472 (944)
T ss_pred CCC--CCCcCCCC---CCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE-
Confidence 975 58888888 6442 22 222222110 00123689999999999999999999998764
Q ss_pred cCEEEEEeece
Q 009897 254 YPCTLLFKTVH 264 (523)
Q Consensus 254 ~~Vt~~~r~~~ 264 (523)
||++.|++.
T Consensus 473 --Vtlv~rr~~ 481 (944)
T PRK12779 473 --VTIVYRRTK 481 (944)
T ss_pred --EEEEEecCc
Confidence 999998753
No 59
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.89 E-value=6.7e-22 Score=218.48 Aligned_cols=296 Identities=21% Similarity=0.227 Sum_probs=169.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++|+|||||||||+||..|++.|++|+|||+.+.+||...+.+|..+ .+ .++..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~r-----------------------lp-~e~l~ 591 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFR-----------------------IS-AESIQ 591 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccC-----------------------CC-HHHHH
Confidence 3489999999999999999999999999999999999998765333211 11 23444
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
+..+.+..+++ .+++++.. + +++.+.. ...||+||||||
T Consensus 592 ~~ie~l~~~GV--e~~~g~~~-----d---------------------------~~ve~l~-------~~gYDaVIIATG 630 (1012)
T TIGR03315 592 KDIELVKFHGV--EFKYGCSP-----D---------------------------LTVAELK-------NQGYKYVILAIG 630 (1012)
T ss_pred HHHHHHHhcCc--EEEEeccc-----c---------------------------eEhhhhh-------cccccEEEECCC
Confidence 44455566676 56665311 0 1111221 456999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecCCCCc----h-hhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL----A-AELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~----~-~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
+. .+..+.++ |... .++...++.. . .....+|+|+|||+|.+|+|+|..+.+.... ++|+++.|+.
T Consensus 631 A~--~~~~l~I~---G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga-~kVtLVyRr~ 701 (1012)
T TIGR03315 631 AW--KHGPLRLE---GGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGV-EKVTVVYRRT 701 (1012)
T ss_pred CC--CCCCCCcC---CCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCC-ceEEEEEccC
Confidence 76 35555566 5321 2232222111 0 0123599999999999999999988876221 4599999876
Q ss_pred eeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcc
Q 009897 264 HWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCM 343 (523)
Q Consensus 264 ~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 343 (523)
.-.+|... .. +...+.. ...+.....
T Consensus 702 ~~~Mpa~~------------------------------------eE----l~~alee-----GVe~~~~~~--------- 727 (1012)
T TIGR03315 702 KRYMPASR------------------------------------EE----LEEALED-----GVDFKELLS--------- 727 (1012)
T ss_pred ccccccCH------------------------------------HH----HHHHHHc-----CCEEEeCCc---------
Confidence 32222210 00 0001100 000000000
Q ss_pred eeecCcchhhhccCCCEEEEecCceEEecCc--EEEcCCc-eeeeccEEEEecCCCCCccccccccchhhhhhhcCCCcc
Q 009897 344 FTVLPRNFYDRVQGGGLSLMKSRSFTFCKNG--LVIDGET-TPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGSSAP 420 (523)
Q Consensus 344 ~~~~~~~~~~~~~~g~v~v~~~~i~~~~~~~--v~l~dG~-~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~~~~ 420 (523)
...+..+++++..-.+...+.++ ....+|+ ..+++|.||+|+|++++..+++.++.. +... + ...
T Consensus 728 --------p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~-ld~~--G-~I~ 795 (1012)
T TIGR03315 728 --------PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIP-LDEY--G-WPV 795 (1012)
T ss_pred --------eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcc-cCCC--C-CEE
Confidence 01111233333211111111111 2223444 238999999999999987654322211 1100 0 001
Q ss_pred cccccccCCCCCeEEecccC-CCCchhhHHHHHHHHHHHHcCCCC
Q 009897 421 LYREGIHPQIPQLAILGYAD-SPSILRTTEMRSKCLAHFLAGNSN 464 (523)
Q Consensus 421 ly~~~~~~~~p~l~~iG~~~-~~~~~~~ae~Qa~~~a~~l~g~~~ 464 (523)
.-.....++.|+||++|.+. .+..+..|..|++.+|..+.++..
T Consensus 796 VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 796 VNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred eCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 11123456889999999876 345677899999999999987654
No 60
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.89 E-value=7.6e-22 Score=218.74 Aligned_cols=165 Identities=25% Similarity=0.370 Sum_probs=114.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
...++|+||||||+||+||..|++.|++|+|||+.+.+||.+.+..|. +.+ + .++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~--------------~rl--------p--~~~~ 484 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPE--------------FRL--------P--KKIV 484 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCC--------------CCC--------C--HHHH
Confidence 345899999999999999999999999999999988899987652221 111 1 2345
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
....+..+++++ .+++++.|. ..|++.+.. .+.||+|||||
T Consensus 485 ~~~~~~l~~~gv--~~~~~~~v~------------------------------~~v~~~~l~-------~~~ydavvlAt 525 (752)
T PRK12778 485 DVEIENLKKLGV--KFETDVIVG------------------------------KTITIEELE-------EEGFKGIFIAS 525 (752)
T ss_pred HHHHHHHHHCCC--EEECCCEEC------------------------------CcCCHHHHh-------hcCCCEEEEeC
Confidence 555556677777 777776541 112233222 46699999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCc------------hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccC
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL------------AAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYP 255 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~------------~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 255 (523)
|+. .|+.|++| |.+. . .+++..++.. ......||+|+|||+|.+|+|+|..+.+.+. ++
T Consensus 526 Ga~--~~~~l~ip---G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga--~~ 596 (752)
T PRK12778 526 GAG--LPNFMNIP---GENS-N-GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGA--ER 596 (752)
T ss_pred CCC--CCCCCCCC---CCCC-C-CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCC--Ce
Confidence 974 47778888 6542 1 1222222111 0012468999999999999999999998764 35
Q ss_pred EEEEEeece
Q 009897 256 CTLLFKTVH 264 (523)
Q Consensus 256 Vt~~~r~~~ 264 (523)
||++.|++.
T Consensus 597 Vtlv~r~~~ 605 (752)
T PRK12778 597 VTIVYRRSE 605 (752)
T ss_pred EEEeeecCc
Confidence 999998754
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.88 E-value=9.6e-22 Score=213.77 Aligned_cols=164 Identities=29% Similarity=0.429 Sum_probs=112.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
+..++|+||||||+||++|..|++.|++|+|||+.+.+||.+....|. +....++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~------------------------~~~~~~~~ 246 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPR------------------------FRLPESVI 246 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCC------------------------CCCCHHHH
Confidence 345899999999999999999999999999999999999988652221 11123455
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
++..+...++++ .+++++.+. . .+++.+. ...||+||+||
T Consensus 247 ~~~~~~l~~~Gv--~i~~~~~v~-~-----------------------------dv~~~~~--------~~~~DaVilAt 286 (652)
T PRK12814 247 DADIAPLRAMGA--EFRFNTVFG-R-----------------------------DITLEEL--------QKEFDAVLLAV 286 (652)
T ss_pred HHHHHHHHHcCC--EEEeCCccc-C-----------------------------ccCHHHH--------HhhcCEEEEEc
Confidence 555566677787 777776441 0 1111111 23599999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCc----hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL----AAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~----~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
|+. .+..+++| |.+. .+ ++...++.. ......+|+|+|||+|.+|+|+|..+...+. ++||++.|++
T Consensus 287 Ga~--~~~~~~ip---G~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga--~~Vtlv~r~~ 357 (652)
T PRK12814 287 GAQ--KASKMGIP---GEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGA--ESVTILYRRT 357 (652)
T ss_pred CCC--CCCCCCCC---CcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCC--CeEEEeeecC
Confidence 975 24556677 6432 22 222222111 1123568999999999999999999988764 3599999876
Q ss_pred e
Q 009897 264 H 264 (523)
Q Consensus 264 ~ 264 (523)
.
T Consensus 358 ~ 358 (652)
T PRK12814 358 R 358 (652)
T ss_pred c
Confidence 4
No 62
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.88 E-value=4.1e-21 Score=194.93 Aligned_cols=178 Identities=22% Similarity=0.281 Sum_probs=113.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++|+|||||++|+++|..|++.|++|+++|+.+.+||.+...++. ...+.+.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~-----------------------~~~~~~~~~~ 73 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPE-----------------------FRIPIERVRE 73 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcc-----------------------cccCHHHHHH
Confidence 34799999999999999999999999999999999998876532110 0112344555
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
.++++.+. ++ .+++++.|..+..... . ..+.+.......+ ...+.||+||+|||
T Consensus 74 ~~~~l~~~-~i--~~~~~~~v~~~~~~~~-~-----------------~~~~~~~~~~~~~-----~~~~~~d~lviAtG 127 (352)
T PRK12770 74 GVKELEEA-GV--VFHTRTKVCCGEPLHE-E-----------------EGDEFVERIVSLE-----ELVKKYDAVLIATG 127 (352)
T ss_pred HHHHHHhC-Ce--EEecCcEEeecccccc-c-----------------cccccccccCCHH-----HHHhhCCEEEEEeC
Confidence 55555443 76 6778877765543100 0 0112222211111 01468999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEec---------CCC--Cch--hhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccC
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHS---------MND--DLA--AELINGKRVTVIGFQKSAVDVAAEVANRNGVRYP 255 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~---------~~~--~~~--~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 255 (523)
+. .|..|++| |.+. .+ +..+ ... ... .....+++|+|||+|.+|+|+|..++..+. ++
T Consensus 128 s~--~~~~~~ip---g~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~--~~ 198 (352)
T PRK12770 128 TW--KSRKLGIP---GEDL-PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGA--EK 198 (352)
T ss_pred CC--CCCcCCCC---Cccc-cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCC--Ce
Confidence 63 36777787 5442 11 1111 111 010 012358999999999999999999987653 24
Q ss_pred EEEEEeece
Q 009897 256 CTLLFKTVH 264 (523)
Q Consensus 256 Vt~~~r~~~ 264 (523)
|+++.|++.
T Consensus 199 Vtvi~~~~~ 207 (352)
T PRK12770 199 VYLAYRRTI 207 (352)
T ss_pred EEEEeecch
Confidence 999988654
No 63
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=8.8e-21 Score=184.37 Aligned_cols=220 Identities=22% Similarity=0.302 Sum_probs=154.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-CceEEEccCCCCCccccc--ccCcccccCC-----------cCceeeCCCCCCC--
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG-FKPIVFEARSGIGGVWSQ--TIESTKLQTP-----------KSFYQFSDFAWPN-- 94 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~--~~~~~~~~~~-----------~~~~~~~~~~~~~-- 94 (523)
.|++.||.||+-|+.|..|.+.+ ++...+||.+.. .|+. ..|+..+++| ...|+|-.+-...
T Consensus 6 ~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~R 83 (436)
T COG3486 6 LDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHGR 83 (436)
T ss_pred eeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcch
Confidence 89999999999999999999975 789999998876 6776 5677766654 2222221100000
Q ss_pred -----CCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeE--EEEee
Q 009897 95 -----SVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWN--VTVQE 167 (523)
Q Consensus 95 -----~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~ 167 (523)
.....++.+.|+.+|+++.+.++. .++|+++|++|.... .+...+ +.+.+
T Consensus 84 Ly~Fl~~e~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~--------------------~d~~~~~~~~t~~ 140 (436)
T COG3486 84 LYEFLNYETFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLD--------------------GDAVVRLFVVTAN 140 (436)
T ss_pred HhhhhhhhcccccHHHHHHHHHHHHhhCC---ccccCCeeccccccC--------------------CcceeEEEEEcCC
Confidence 014677899999999999999883 799999999884432 012233 33333
Q ss_pred cccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCC-ccEEecCCCCchhhhcCCCE-EEEEcCCCCHHHHHHH
Q 009897 168 ARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFD-GKVLHSMNDDLAAELINGKR-VTVIGFQKSAVDVAAE 245 (523)
Q Consensus 168 ~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~-g~~~h~~~~~~~~~~~~~k~-V~VvG~G~sg~d~a~~ 245 (523)
+. .++++.|||++| ..|.+|+.- ..+. .+++|+.+|.........|+ |+|||+|-||.|+...
T Consensus 141 ~~-------~y~ar~lVlg~G---~~P~IP~~f-----~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~ 205 (436)
T COG3486 141 GT-------VYRARNLVLGVG---TQPYIPPCF-----RSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLD 205 (436)
T ss_pred Cc-------EEEeeeEEEccC---CCcCCChHH-----hCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHH
Confidence 33 899999999999 468998621 1222 47999999875444455555 9999999999999999
Q ss_pred HHHhcCC-ccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCC
Q 009897 246 VANRNGV-RYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNP 290 (523)
Q Consensus 246 l~~~~~~-~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~ 290 (523)
|...... ..++.|++|++.+....+.+++...+...+.+.+...|
T Consensus 206 Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~ 251 (436)
T COG3486 206 LLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLP 251 (436)
T ss_pred HHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCC
Confidence 9875432 24588999998866555555554445555555555443
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.86 E-value=1.5e-20 Score=197.10 Aligned_cols=168 Identities=22% Similarity=0.355 Sum_probs=114.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
...++|+||||||+||++|..|++.|++|+|+|+.+.+||.+.+.+|.. -...++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~------------------------~~~~~~~ 194 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSF------------------------KLDKAVL 194 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccc------------------------cCCHHHH
Confidence 3558999999999999999999999999999999999999876422211 1124566
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
++..++++++|+ .++++++|.. + +.+.+. ...||+||+||
T Consensus 195 ~~~~~~~~~~Gv--~~~~~~~v~~---~---------------------------~~~~~~--------~~~~D~vilAt 234 (467)
T TIGR01318 195 SRRREIFTAMGI--EFHLNCEVGR---D---------------------------ISLDDL--------LEDYDAVFLGV 234 (467)
T ss_pred HHHHHHHHHCCC--EEECCCEeCC---c---------------------------cCHHHH--------HhcCCEEEEEe
Confidence 677777888888 7888876621 0 111111 34699999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCC-----------C---Cch-hhhcCCCEEEEEcCCCCHHHHHHHHHHhcCC
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMN-----------D---DLA-AELINGKRVTVIGFQKSAVDVAAEVANRNGV 252 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~-----------~---~~~-~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 252 (523)
|+.. +..+++| |.+. .| +.+..+ . ... .....+|+|+|||+|.+|+|+|..+...+.
T Consensus 235 Ga~~--~~~~~i~---g~~~-~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga- 306 (467)
T TIGR01318 235 GTYR--SMRGGLP---GEDA-PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGA- 306 (467)
T ss_pred CCCC--CCcCCCC---CcCC-CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCC-
Confidence 9762 3344566 5432 11 121110 0 000 012458999999999999999999888764
Q ss_pred ccCEEEEEeeceeEec
Q 009897 253 RYPCTLLFKTVHWMVP 268 (523)
Q Consensus 253 ~~~Vt~~~r~~~~~~p 268 (523)
++||++.|++...+|
T Consensus 307 -~~Vtvv~r~~~~~~~ 321 (467)
T TIGR01318 307 -ASVTCAYRRDEANMP 321 (467)
T ss_pred -CeEEEEEecCcccCC
Confidence 349999997653333
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.86 E-value=1.5e-20 Score=211.78 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=114.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++|+||||||+||+||..|++.|++|+|||+.+.+||...+..|. +....++..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~------------------------~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPS------------------------FRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCc------------------------cCCCHHHHH
Confidence 45899999999999999999999999999999999998876542221 112245666
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
...+..+++|+ .+++++.|. . .+++.+.. ....||+||||||
T Consensus 485 ~~~~~l~~~Gv--~~~~~~~vg---~---------------------------~~~~~~l~------~~~~yDaViIATG 526 (1006)
T PRK12775 485 REVQRLVDIGV--KIETNKVIG---K---------------------------TFTVPQLM------NDKGFDAVFLGVG 526 (1006)
T ss_pred HHHHHHHHCCC--EEEeCCccC---C---------------------------ccCHHHHh------hccCCCEEEEecC
Confidence 66777778888 788875431 0 01111110 0245999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecCCCCch-------------hhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccC
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLA-------------AELINGKRVTVIGFQKSAVDVAAEVANRNGVRYP 255 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~-------------~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~ 255 (523)
+. .|+.|++| |.+. . .+++..+|... .....||+|+|||+|.+|+|+|..+.+.+. +.
T Consensus 527 a~--~pr~l~Ip---G~~l-~-gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa--~~ 597 (1006)
T PRK12775 527 AG--APTFLGIP---GEFA-G-QVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGA--PT 597 (1006)
T ss_pred CC--CCCCCCCC---CcCC-C-CcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCC--CE
Confidence 74 47888888 6432 1 23333222110 012468999999999999999988888765 35
Q ss_pred EEEEEeece
Q 009897 256 CTLLFKTVH 264 (523)
Q Consensus 256 Vt~~~r~~~ 264 (523)
|+++.|+..
T Consensus 598 Vtiv~rr~~ 606 (1006)
T PRK12775 598 VRCVYRRSE 606 (1006)
T ss_pred EEEEeecCc
Confidence 898888654
No 66
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.86 E-value=2.7e-20 Score=195.81 Aligned_cols=160 Identities=26% Similarity=0.339 Sum_probs=107.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+....|. +....++..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~------------------------~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPD------------------------FKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCc------------------------ccCCHHHHH
Confidence 45899999999999999999999999999999999999887642221 111234555
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
...+.+.++++ .+++++.|.. + ++... . ...||+||+|||
T Consensus 198 ~~~~~~~~~gv--~~~~~~~v~~---~---------------------------~~~~~-~-------~~~~d~vvlAtG 237 (471)
T PRK12810 198 RRIELMEAEGI--EFRTNVEVGK---D---------------------------ITAEE-L-------LAEYDAVFLGTG 237 (471)
T ss_pred HHHHHHHhCCc--EEEeCCEECC---c---------------------------CCHHH-H-------HhhCCEEEEecC
Confidence 55666777787 7888776521 1 00011 1 357999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecCCCC------------chhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCE
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSMNDD------------LAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPC 256 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~------------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~V 256 (523)
+. .|+.+.+| |.+. .| +.+..++. .......+|+|+|||+|.+|+|+|..+...+. ++|
T Consensus 238 a~--~~~~l~ip---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga--~~V 308 (471)
T PRK12810 238 AY--KPRDLGIP---GRDL-DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGA--KSV 308 (471)
T ss_pred CC--CCCcCCCC---CccC-CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC--CeE
Confidence 75 36667777 6432 22 22211110 00013468999999999999999988888764 348
Q ss_pred EEEEe
Q 009897 257 TLLFK 261 (523)
Q Consensus 257 t~~~r 261 (523)
|++.+
T Consensus 309 t~~~~ 313 (471)
T PRK12810 309 TQRDI 313 (471)
T ss_pred EEccc
Confidence 75443
No 67
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.85 E-value=2.3e-20 Score=203.78 Aligned_cols=164 Identities=20% Similarity=0.319 Sum_probs=112.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
...++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+.+|..+ ...++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~------------------------l~~~~~ 380 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFK------------------------LDKSLL 380 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCcc------------------------CCHHHH
Confidence 34589999999999999999999999999999999999998775333211 113455
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
++..+.++++|+ .+++++.|.. . +++.+. ...||+||+||
T Consensus 381 ~~~~~~~~~~Gv--~~~~~~~v~~----~--------------------------i~~~~~--------~~~~DavilAt 420 (654)
T PRK12769 381 ARRREIFSAMGI--EFELNCEVGK----D--------------------------ISLESL--------LEDYDAVFVGV 420 (654)
T ss_pred HHHHHHHHHCCe--EEECCCEeCC----c--------------------------CCHHHH--------HhcCCEEEEeC
Confidence 555666777887 7888876620 0 111111 24699999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecC--------------CCCc-hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCC
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSM--------------NDDL-AAELINGKRVTVIGFQKSAVDVAAEVANRNGV 252 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~--------------~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 252 (523)
|+. .+..+.+| |.+. .| ++... .+.. ......+|+|+|||+|.+|+|+|..+.+.+.
T Consensus 421 Ga~--~~~~l~i~---g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga- 492 (654)
T PRK12769 421 GTY--RSMKAGLP---NEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGA- 492 (654)
T ss_pred CCC--CCCCCCCC---CCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC-
Confidence 986 35455566 4332 22 11110 0100 0012468999999999999999998888764
Q ss_pred ccCEEEEEeece
Q 009897 253 RYPCTLLFKTVH 264 (523)
Q Consensus 253 ~~~Vt~~~r~~~ 264 (523)
++||++.|++.
T Consensus 493 -~~Vt~i~~~~~ 503 (654)
T PRK12769 493 -SNVTCAYRRDE 503 (654)
T ss_pred -CeEEEeEecCC
Confidence 35999998765
No 68
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.2e-20 Score=164.58 Aligned_cols=182 Identities=20% Similarity=0.260 Sum_probs=135.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
.+|+|||.||++..||.++.+..+++++||--. . ...-|+=.+.+....-.|++||-. ..+.++.+.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~----~~i~pGGQLtTTT~veNfPGFPdg-------i~G~~l~d~m 76 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-A----NGIAPGGQLTTTTDVENFPGFPDG-------ITGPELMDKM 76 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeee-c----cCcCCCceeeeeeccccCCCCCcc-------cccHHHHHHH
Confidence 589999999999999999999999999999421 1 112233333333333344544432 4678999999
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
++.+++||. .|.. .+|.+++... .-|.|.+..+ .+.+|.||+|||+.
T Consensus 77 rkqs~r~Gt--~i~t-EtVskv~~ss----------------------kpF~l~td~~--------~v~~~avI~atGAs 123 (322)
T KOG0404|consen 77 RKQSERFGT--EIIT-ETVSKVDLSS----------------------KPFKLWTDAR--------PVTADAVILATGAS 123 (322)
T ss_pred HHHHHhhcc--eeee-eehhhccccC----------------------CCeEEEecCC--------ceeeeeEEEecccc
Confidence 999999998 5554 4787777754 4577877544 78999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCccEEecCCCCchh-hhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 191 SDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAA-ELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 191 s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~-~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.+...+|+. |...|..+.+.++..++.. ..|++|..+|||+|.||+|-|..|.+.+.+ |+++.|+.+
T Consensus 124 ---AkRl~~pg~-ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyask---Vyii~Rrd~ 191 (322)
T KOG0404|consen 124 ---AKRLHLPGE-GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASK---VYIIHRRDH 191 (322)
T ss_pred ---eeeeecCCC-CcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccE---EEEEEEhhh
Confidence 455566722 3344777777777776542 348999999999999999999999998865 999999876
No 69
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.85 E-value=7.6e-20 Score=207.32 Aligned_cols=284 Identities=13% Similarity=0.083 Sum_probs=172.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.+||+||||||+||+||.+|++.|++|+|+|+.+.+||.+..... . ... .+..++.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~-----------------~----~~g-~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE-----------------T----IDG-KPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc-----------------c----cCC-ccHHHHHHH
Confidence 379999999999999999999999999999999999998764210 0 001 122333333
Q ss_pred HHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEE-Ee-------ecccCCcceeEEEe
Q 009897 110 LQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVT-VQ-------EARNVSSATEAYQV 180 (523)
Q Consensus 110 l~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------~~~~~~~~~~~~~~ 180 (523)
+.+.++.+ ++ .+..+++|..+.... ....+. .. .+. ..+....+.|
T Consensus 221 ~~~~l~~~~~v--~v~~~t~V~~i~~~~----------------------~v~~v~~~~~~~~~~~~~~-~~~~~~~i~a 275 (985)
T TIGR01372 221 TVAELTAMPEV--TLLPRTTAFGYYDHN----------------------TVGALERVTDHLDAPPKGV-PRERLWRIRA 275 (985)
T ss_pred HHHHHhcCCCc--EEEcCCEEEEEecCC----------------------eEEEEEEeeeccccccCCc-cccceEEEEc
Confidence 33333334 35 677888888775421 000010 00 000 0011236899
Q ss_pred CEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecC---CCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEE
Q 009897 181 DFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSM---NDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCT 257 (523)
Q Consensus 181 d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~---~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt 257 (523)
|.||||||+. |+.|++| |.+. .| ++... .+........+++|+|||+|.+|+|+|..|+..+. +.|+
T Consensus 276 ~~VILATGa~---~r~~pip---G~~~-pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~--~vV~ 345 (985)
T TIGR01372 276 KRVVLATGAH---ERPLVFA---NNDR-PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGI--AVVA 345 (985)
T ss_pred CEEEEcCCCC---CcCCCCC---CCCC-CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCC--ceEE
Confidence 9999999964 6777777 5432 22 12111 11111122468999999999999999999999874 2377
Q ss_pred EEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccc
Q 009897 258 LLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLN 337 (523)
Q Consensus 258 ~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 337 (523)
++.+.+. +.
T Consensus 346 vv~~~~~-~~---------------------------------------------------------------------- 354 (985)
T TIGR01372 346 IIDARAD-VS---------------------------------------------------------------------- 354 (985)
T ss_pred EEccCcc-hh----------------------------------------------------------------------
Confidence 7766432 00
Q ss_pred cccCcceeecCcchhhhccCCCEEEEecC-ceEEecC----cEEEc----CCceeeeccEEEEecCCCCCccccccccch
Q 009897 338 QISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKN----GLVID----GETTPLVTDIVIFATGYKSDEKLKNIFKST 408 (523)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~----~v~l~----dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~ 408 (523)
..+.+.+++.+|+++.+. +.++.++ +|++. ++++ +++|.|++++|++|+..+...+...
T Consensus 355 -----------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~-i~~D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 355 -----------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQR-LEADALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred -----------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEE-EECCEEEEcCCcCchhHHHHhcCCC
Confidence 001123444556666664 5566543 35554 4455 9999999999999998765433211
Q ss_pred hhhhhhcCCCcccccccccCCCCCeEEecccCCCCchhhHHHHHHHHHHHH
Q 009897 409 YFQKQITGSSAPLYREGIHPQIPQLAILGYADSPSILRTTEMRSKCLAHFL 459 (523)
Q Consensus 409 ~l~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~~~~~ae~Qa~~~a~~l 459 (523)
. . +.. ....| .-.++.|+||++|.......+..+..+++.++..+
T Consensus 423 ~-~--~~~-~~~~~--~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 423 L-A--WDA-AIAAF--LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAA 467 (985)
T ss_pred e-e--ecc-ccCce--ecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHH
Confidence 0 0 000 00011 11245899999998887666667788887776655
No 70
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.84 E-value=1.1e-19 Score=189.60 Aligned_cols=278 Identities=18% Similarity=0.241 Sum_probs=170.9
Q ss_pred HHHHHHHHC--CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH-HHHHHHHhCCC
Q 009897 44 LACKYTLEN--GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY-LQAYAAHFNLF 120 (523)
Q Consensus 44 ~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~~~l~ 120 (523)
+||.+|++. ..+|+|||+++..+ |.....+..........+++..| .+.+.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~--------------------~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv- 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS--------------------FANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGI- 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee--------------------EEcCCCCeEeccccCCHHHcccCCHHHHHHhcCC-
Confidence 478888875 47899999987542 10000010001111112333333 3455677888
Q ss_pred CceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEE--eCEEEEeeeecCCCCCCCC
Q 009897 121 PSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQ--VDFVILCIGRYSDLPNTPD 198 (523)
Q Consensus 121 ~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~d~vVlAtG~~s~~p~~p~ 198 (523)
.++++++|+.+++.. +.|.+.+.. +++ ++. ||+||+|||+ .|+.|+
T Consensus 60 -~~~~~~~V~~id~~~------------------------~~v~~~~~~--~~~--~~~~~yd~lIiATG~---~p~~~~ 107 (427)
T TIGR03385 60 -DVKTNHEVIEVNDER------------------------QTVVVRNNK--TNE--TYEESYDYLILSPGA---SPIVPN 107 (427)
T ss_pred -eEEecCEEEEEECCC------------------------CEEEEEECC--CCC--EEecCCCEEEECCCC---CCCCCC
Confidence 788899999998754 345554321 111 566 9999999995 578888
Q ss_pred CCCCCCCCCCCccEEecCCCCchh------hhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEecCccC
Q 009897 199 FPMNKGPEVFDGKVLHSMNDDLAA------ELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVPDYFL 272 (523)
Q Consensus 199 ~p~~~g~~~~~g~~~h~~~~~~~~------~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~ 272 (523)
+| |.+. ..+++.....+.. ....+++|+|||+|.+|+|+|..|++.+. +||++.+.+....+...
T Consensus 108 i~---G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~~~~~~- 178 (427)
T TIGR03385 108 IE---GINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERILNKLFD- 178 (427)
T ss_pred CC---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccCccccC-
Confidence 88 6542 1233332221110 11457999999999999999999998765 49999987652222110
Q ss_pred CCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecCcchh
Q 009897 273 WSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFY 352 (523)
Q Consensus 273 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~ 352 (523)
. .+.+.+.
T Consensus 179 ----------------------------------~--------------------------------------~~~~~~~ 186 (427)
T TIGR03385 179 ----------------------------------E--------------------------------------EMNQIVE 186 (427)
T ss_pred ----------------------------------H--------------------------------------HHHHHHH
Confidence 0 0011122
Q ss_pred hhccCCCEEEEecC-ceEEecCc--EEEcCCceeeeccEEEEecCCCCCccccccccchhhh-hhhcCCCcccccccccC
Q 009897 353 DRVQGGGLSLMKSR-SFTFCKNG--LVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQ-KQITGSSAPLYREGIHP 428 (523)
Q Consensus 353 ~~~~~g~v~v~~~~-i~~~~~~~--v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~-~~~~~~~~~ly~~~~~~ 428 (523)
+.+++.+|+++.+. +.++++++ +++.+|++ +++|.||+|||++++..+++..+...-. ..+.. . ..+.+
T Consensus 187 ~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~v---d---~~~~t 259 (427)
T TIGR03385 187 EELKKHEINLRLNEEVDSIEGEERVKVFTSGGV-YQADMVILATGIKPNSELAKDSGLKLGETGAIWV---N---EKFQT 259 (427)
T ss_pred HHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCE-EEeCEEEECCCccCCHHHHHhcCcccCCCCCEEE---C---CCcEe
Confidence 34445567777664 77776554 37788888 9999999999999987654322211100 11111 1 12335
Q ss_pred CCCCeEEecccCCC-----------CchhhHHHHHHHHHHHHcCC
Q 009897 429 QIPQLAILGYADSP-----------SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 429 ~~p~l~~iG~~~~~-----------~~~~~ae~Qa~~~a~~l~g~ 462 (523)
+.|+||++|.+... .....+..|++++|+.|.|+
T Consensus 260 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 260 SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 78999999976531 24578999999999999886
No 71
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.83 E-value=8.8e-20 Score=174.74 Aligned_cols=321 Identities=16% Similarity=0.196 Sum_probs=191.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccCcccccCCcCceeeCCCC-CCC---CCCCCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQFSDFA-WPN---SVTETFPD 102 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~ 102 (523)
.++||+|||+||+|..||...++.|++.+++|++..+||++.. +.|+..+...++.|+...-. +.. +...--.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 4699999999999999999999999999999999999999998 78888876666555433210 100 00112224
Q ss_pred hhHHHHHHHHHHHHhC--CCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEe
Q 009897 103 HNKVMEYLQAYAAHFN--LFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQV 180 (523)
Q Consensus 103 ~~~~~~yl~~~~~~~~--l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 180 (523)
.+.++......++++. +...++ ..+|+.+.... .|-+.....+.-.++ +.+.+.+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG~g-----------------sf~~p~~V~v~k~dg-----~~~ii~a 174 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKGFG-----------------SFLDPNKVSVKKIDG-----EDQIIKA 174 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEeeeE-----------------eecCCceEEEeccCC-----CceEEee
Confidence 4555555555555442 110111 12444443321 011122333333333 3458999
Q ss_pred CEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEE
Q 009897 181 DFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLF 260 (523)
Q Consensus 181 d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~ 260 (523)
+.+|+|||+. .+++| |++.-..+++.|...... ..-+++++|||+|.+|.|+..-..+.+.. ||++.
T Consensus 175 KnIiiATGSe-----V~~~P---GI~IDekkIVSStgALsL--~~vPk~~~viG~G~IGLE~gsV~~rLGse---VT~VE 241 (506)
T KOG1335|consen 175 KNIIIATGSE-----VTPFP---GITIDEKKIVSSTGALSL--KEVPKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVE 241 (506)
T ss_pred eeEEEEeCCc-----cCCCC---CeEecCceEEecCCccch--hhCcceEEEEcCceeeeehhhHHHhcCCe---EEEEE
Confidence 9999999953 33455 654333345544443333 24589999999999999999999999876 99997
Q ss_pred eeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCccccccc
Q 009897 261 KTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQIS 340 (523)
Q Consensus 261 r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 340 (523)
-.++ +.+..+ ....+.+++.+
T Consensus 242 f~~~-i~~~mD------------------------------------~Eisk~~qr~L---------------------- 262 (506)
T KOG1335|consen 242 FLDQ-IGGVMD------------------------------------GEISKAFQRVL---------------------- 262 (506)
T ss_pred ehhh-hccccC------------------------------------HHHHHHHHHHH----------------------
Confidence 7655 222211 11222222222
Q ss_pred CcceeecCcchhhhccCCCEEEEecC-ceEEec--C-c--EEEc---CC-ceeeeccEEEEecCCCCCccccccccchhh
Q 009897 341 SCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCK--N-G--LVID---GE-TTPLVTDIVIFATGYKSDEKLKNIFKSTYF 410 (523)
Q Consensus 341 ~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~--~-~--v~l~---dG-~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l 410 (523)
...++.++.++ +...+. + . |.+. +| ++.+++|+++.|+|.+|-..=+.+....
T Consensus 263 ---------------~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iG-- 325 (506)
T KOG1335|consen 263 ---------------QKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIG-- 325 (506)
T ss_pred ---------------HhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcc--
Confidence 22233444333 333322 2 1 2222 22 2348999999999999854322111000
Q ss_pred hhhhcCCCc-ccccccccCCCCCeEEecccCCCC-chhhHHHHHHHHHHHHcCCC
Q 009897 411 QKQITGSSA-PLYREGIHPQIPQLAILGYADSPS-ILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 411 ~~~~~~~~~-~ly~~~~~~~~p~l~~iG~~~~~~-~~~~ae~Qa~~~a~~l~g~~ 463 (523)
...+... -.-..-|.+.+||||.||.+.... ..+-||.|+..+...+.|..
T Consensus 326 --i~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~ 378 (506)
T KOG1335|consen 326 --IELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH 378 (506)
T ss_pred --cccccccceeccccccccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence 0001111 122234567899999999876543 45789999999999998873
No 72
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.83 E-value=2.2e-19 Score=195.32 Aligned_cols=164 Identities=22% Similarity=0.338 Sum_probs=113.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
+..++|+||||||+||++|..|++.|++|+|||+.+.+||.|.+..|..+ .+ .++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~-----------------------l~-~~~~ 363 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFK-----------------------LD-KTVL 363 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCccc-----------------------CC-HHHH
Confidence 35699999999999999999999999999999999999999876333211 11 4555
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
+...+..+.+|+ .++++++|.. + +++.+. ...||+||+||
T Consensus 364 ~~~~~~~~~~Gv--~~~~~~~v~~---~---------------------------~~~~~l--------~~~~DaV~lat 403 (639)
T PRK12809 364 SQRREIFTAMGI--DFHLNCEIGR---D---------------------------ITFSDL--------TSEYDAVFIGV 403 (639)
T ss_pred HHHHHHHHHCCe--EEEcCCccCC---c---------------------------CCHHHH--------HhcCCEEEEeC
Confidence 666667778888 7888776521 0 111111 34699999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecC-----------CCCc----hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCC
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSM-----------NDDL----AAELINGKRVTVIGFQKSAVDVAAEVANRNGV 252 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~-----------~~~~----~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 252 (523)
|+. .+..+.+| |.+. .| +++.. .... ......+|+|+|||+|.+|+|+|..+.+.+.
T Consensus 404 Ga~--~~~~~~i~---g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga- 475 (639)
T PRK12809 404 GTY--GMMRADLP---HEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA- 475 (639)
T ss_pred CCC--CCCCCCCC---CCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC-
Confidence 986 35555666 5432 22 11110 0000 0023468999999999999999998887764
Q ss_pred ccCEEEEEeece
Q 009897 253 RYPCTLLFKTVH 264 (523)
Q Consensus 253 ~~~Vt~~~r~~~ 264 (523)
++||++.|++.
T Consensus 476 -~~Vt~v~rr~~ 486 (639)
T PRK12809 476 -ASVTCAYRRDE 486 (639)
T ss_pred -CeEEEeeecCc
Confidence 35999998754
No 73
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.82 E-value=1.1e-18 Score=170.06 Aligned_cols=299 Identities=16% Similarity=0.143 Sum_probs=186.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|+|+|.+|.+.++.|-..-++|+|+.+++.. .+-|..+...-.......+.+-
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF----------------------lFTPLLpS~~vGTve~rSIvEP 112 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF----------------------LFTPLLPSTTVGTVELRSIVEP 112 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccce----------------------EEeeccCCccccceeehhhhhh
Confidence 489999999999999999999999999999987643 1222222212333445677788
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC-cceeEEEeCEEEEeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS-SATEAYQVDFVILCIG 188 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~vVlAtG 188 (523)
++..+.+.+-. .-.+..+-.+++++. ..|+++....++ .....+.||+||+|+|
T Consensus 113 Ir~i~r~k~~~-~~y~eAec~~iDp~~------------------------k~V~~~s~t~~~~~~e~~i~YDyLViA~G 167 (491)
T KOG2495|consen 113 IRAIARKKNGE-VKYLEAECTKIDPDN------------------------KKVHCRSLTADSSDKEFVIGYDYLVIAVG 167 (491)
T ss_pred HHHHhhccCCC-ceEEecccEeecccc------------------------cEEEEeeeccCCCcceeeecccEEEEecc
Confidence 88777766531 223455666666654 455555432111 3345799999999999
Q ss_pred ecCCCCCCCCCCCCCCCCC---CCccEEecCCC-------------Cc--hhhhcCCCEEEEEcCCCCHHHHHHHHHHhc
Q 009897 189 RYSDLPNTPDFPMNKGPEV---FDGKVLHSMND-------------DL--AAELINGKRVTVIGFQKSAVDVAAEVANRN 250 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~---~~g~~~h~~~~-------------~~--~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~ 250 (523)
+. |+++.+| |... |-..+-+.... .. ..+..+--+++|||||++|+|+|.+|+..-
T Consensus 168 A~---~~TFgip---GV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi 241 (491)
T KOG2495|consen 168 AE---PNTFGIP---GVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFI 241 (491)
T ss_pred CC---CCCCCCC---chhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHH
Confidence 54 7888777 5443 22222222211 10 001112347999999999999999999753
Q ss_pred CC-----------ccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHH
Q 009897 251 GV-----------RYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLK 319 (523)
Q Consensus 251 ~~-----------~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (523)
.+ .-+||++...|+ +++. +.+.+..+.
T Consensus 242 ~~Dl~k~yp~l~~~i~vtLiEA~d~-iL~m----------------------------------------Fdkrl~~ya- 279 (491)
T KOG2495|consen 242 PEDLRKIYPELKKDIKVTLIEAADH-ILNM----------------------------------------FDKRLVEYA- 279 (491)
T ss_pred HHHHHHhhhcchhheEEEeeccchh-HHHH----------------------------------------HHHHHHHHH-
Confidence 21 133555554443 1111 112222222
Q ss_pred hcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecCcEEEcCC----ceeeeccEEEEecC
Q 009897 320 WTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNGLVIDGE----TTPLVTDIVIFATG 394 (523)
Q Consensus 320 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~v~l~dG----~~~~~~D~VI~ATG 394 (523)
.+++.+-+|.+..+. +..++++.++...+ ++ ++.-.+|||||
T Consensus 280 --------------------------------e~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~-iPYG~lVWatG 326 (491)
T KOG2495|consen 280 --------------------------------ENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEE-IPYGLLVWATG 326 (491)
T ss_pred --------------------------------HHHhhhccceeecccEEEeecCcEEEEEcCCCceee-ecceEEEecCC
Confidence 134555667888885 77888888877654 45 89999999999
Q ss_pred CCCCccccccccchhhhhhhcCCC----cccccccccCCCCCeEEecccCCC----CchhhHHHHHHHHHHHHcCCC
Q 009897 395 YKSDEKLKNIFKSTYFQKQITGSS----APLYREGIHPQIPQLAILGYADSP----SILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 395 ~~~~~~l~~~~~~~~l~~~~~~~~----~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
-.+..-..++. ...-.++. ...|.++ ++.+|||+||.+... .+..+|+.|+.|+|+++.-..
T Consensus 327 ~~~rp~~k~lm-----~~i~e~~rr~L~vDE~LrV--~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~ 396 (491)
T KOG2495|consen 327 NGPRPVIKDLM-----KQIDEQGRRGLAVDEWLRV--KGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMG 396 (491)
T ss_pred CCCchhhhhHh-----hcCCccCceeeeeeceeec--cCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHh
Confidence 99876443321 11100110 0234343 788999999988732 245799999999999986543
No 74
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.82 E-value=2.4e-19 Score=177.95 Aligned_cols=265 Identities=17% Similarity=0.290 Sum_probs=177.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--ceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF--KPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
.+.++|||+|++|..|+.++++.|+ +++++-+...+ .|...++ +.+. ....+.+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~------pydr~~L---------s~~~--------~~~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL------PYDRARL---------SKFL--------LTVGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC------cccchhc---------ccce--------eecccccc
Confidence 4789999999999999999999886 67777654433 1111000 0000 00112222
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
....++-+.+++ .+.+++.|+.++... .+|.+.+++ ++.|++++|||
T Consensus 131 ~r~~e~Yke~gI--e~~~~t~v~~~D~~~------------------------K~l~~~~Ge-------~~kys~LilAT 177 (478)
T KOG1336|consen 131 KRTPEFYKEKGI--ELILGTSVVKADLAS------------------------KTLVLGNGE-------TLKYSKLIIAT 177 (478)
T ss_pred ccChhhHhhcCc--eEEEcceeEEeeccc------------------------cEEEeCCCc-------eeecceEEEee
Confidence 233345667777 899999999999865 678888886 99999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecC-CCCchh----hhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSM-NDDLAA----ELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~-~~~~~~----~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
|+ .|+.|++| |.+. +.+++. +..+.. ..-.+++|+|+|+|..|+|+|.++...+. +||++.+.
T Consensus 178 Gs---~~~~l~~p---G~~~---~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e 245 (478)
T KOG1336|consen 178 GS---SAKTLDIP---GVEL---KNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPE 245 (478)
T ss_pred cC---ccccCCCC---Cccc---cceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCc---eEEEEccC
Confidence 95 48888888 6552 222222 222211 11247889999999999999999999754 59999987
Q ss_pred ceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCc
Q 009897 263 VHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSC 342 (523)
Q Consensus 263 ~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 342 (523)
+. .+|+.. +
T Consensus 246 ~~-~~~~lf--~-------------------------------------------------------------------- 254 (478)
T KOG1336|consen 246 PW-LLPRLF--G-------------------------------------------------------------------- 254 (478)
T ss_pred cc-chhhhh--h--------------------------------------------------------------------
Confidence 63 444321 0
Q ss_pred ceeecCcchhhhccCCCEEEEecC-ceEEecCc------EEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhhc
Q 009897 343 MFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNG------LVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQIT 415 (523)
Q Consensus 343 ~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~------v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~ 415 (523)
+.+...+.+.+++.+|++..+. +.+++++. |.+.||++ +++|+||+++|-+|+.++.+. ...++..
T Consensus 255 --~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~-l~adlvv~GiG~~p~t~~~~~--g~~~~~~-- 327 (478)
T KOG1336|consen 255 --PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT-LEADLVVVGIGIKPNTSFLEK--GILLDSK-- 327 (478)
T ss_pred --HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCE-eccCeEEEeeccccccccccc--cceeccc--
Confidence 0122334456677788888876 66665442 78899999 999999999999999876542 1111110
Q ss_pred CCCcccccccccCCCCCeEEecccCCC
Q 009897 416 GSSAPLYREGIHPQIPQLAILGYADSP 442 (523)
Q Consensus 416 ~~~~~ly~~~~~~~~p~l~~iG~~~~~ 442 (523)
+ ....+ ..+.+++||+|++|.+.+.
T Consensus 328 G-~i~V~-~~f~t~~~~VyAiGDva~f 352 (478)
T KOG1336|consen 328 G-GIKVD-EFFQTSVPNVYAIGDVATF 352 (478)
T ss_pred C-CEeeh-hceeeccCCcccccceeec
Confidence 1 01222 4566789999999987654
No 75
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=5.6e-18 Score=169.57 Aligned_cols=376 Identities=19% Similarity=0.216 Sum_probs=211.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCC---CceEEEccCCCCCccccc--ccCcccccCCcCceeeC--CCC-----C------
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG---FKPIVFEARSGIGGVWSQ--TIESTKLQTPKSFYQFS--DFA-----W------ 92 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g---~~v~v~e~~~~~GG~w~~--~~~~~~~~~~~~~~~~~--~~~-----~------ 92 (523)
++|+|||+|++|+++|.+|++.- ..|.|||+.+..|..-.+ ..|...+|+|+..|+.. |.| |
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999942 239999999999887666 55667888887766543 211 0
Q ss_pred ----CC---CCCCCCCChhHHHHHHHHHHHHhCCCCc---e-EeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCe
Q 009897 93 ----PN---SVTETFPDHNKVMEYLQAYAAHFNLFPS---I-KFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKW 161 (523)
Q Consensus 93 ----~~---~~~~~~~~~~~~~~yl~~~~~~~~l~~~---i-~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
++ .+...|+++..+.+|+.++...+--... + ...++++++.+.+ ..+.|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~--------------------n~~~~ 141 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT--------------------NAGGY 141 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc--------------------CCceE
Confidence 00 1246788999999999888766532111 3 3355666666653 13678
Q ss_pred EEEEeecccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccE-EecCCCCc--hhhhcCCCEEEEEcCCCC
Q 009897 162 NVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKV-LHSMNDDL--AAELINGKRVTVIGFQKS 238 (523)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~-~h~~~~~~--~~~~~~~k~V~VvG~G~s 238 (523)
.++..++. ...||.+|+|||+.. |..+. -...+.+.. ++...|.. ......+.+|+|+|+|.+
T Consensus 142 ~~~~~~g~-------~~~ad~~Vlatgh~~--~~~~~-----~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt 207 (474)
T COG4529 142 LVTTADGP-------SEIADIIVLATGHSA--PPADP-----AARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLT 207 (474)
T ss_pred EEecCCCC-------eeeeeEEEEeccCCC--CCcch-----hhhccCCCcceeccccCCcccccccCCCceEEecCCch
Confidence 88888886 889999999999752 32222 112233222 22222221 112234678999999999
Q ss_pred HHHHHHHHHHhcCCccCEEEEEeeceeEecCccCCC------cch---------hhHHHHHHHhcCCCch-hHHHHHh--
Q 009897 239 AVDVAAEVANRNGVRYPCTLLFKTVHWMVPDYFLWS------TFR---------SLNRWTELIIHNPGEG-FFSWLLA-- 300 (523)
Q Consensus 239 g~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~------~~~---------~~~r~~~~~~~~~~~~-~~~~~~~-- 300 (523)
.+|....|...+.+ .+||++.|+. +.|...... ++. +.+.++.++...-..+ -++..+.
T Consensus 208 ~~D~v~~l~~~gh~-g~It~iSRrG--l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~l 284 (474)
T COG4529 208 SIDQVLVLRRRGHK-GPITAISRRG--LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGL 284 (474)
T ss_pred hHHHHHHHhccCCc-cceEEEeccc--cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence 99999999998876 7899999997 344432211 110 0111222221110000 0111111
Q ss_pred -----hhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecCceEEecC--
Q 009897 301 -----LSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSRSFTFCKN-- 373 (523)
Q Consensus 301 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~i~~~~~~-- 373 (523)
.++..+.......+.+++. +++..+..-.-+.+....-+.+.+|.++++.+.+..++..
T Consensus 285 R~~~~~~wq~l~~~er~rf~rH~~--------------~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~e 350 (474)
T COG4529 285 RPQGQWIWQNLPAVERRRFERHLR--------------PIWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGE 350 (474)
T ss_pred hhhhhHHHHhCCHHHHHHHHHhcc--------------cHHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccC
Confidence 1111111111111111111 0000000000123455566778889999999986655432
Q ss_pred c--EEEc----CCceeeeccEEEEecCCCCCccccccccchhhhhhhcC---CCccccccc--------cc---CCCCCe
Q 009897 374 G--LVID----GETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITG---SSAPLYREG--------IH---PQIPQL 433 (523)
Q Consensus 374 ~--v~l~----dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~---~~~~ly~~~--------~~---~~~p~l 433 (523)
+ |.+. +.++.+++|.||.|||.......-. ++++...... .+.+..+++ .. ...+++
T Consensus 351 g~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s---~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~ 427 (474)
T COG4529 351 GRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSS---DPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGL 427 (474)
T ss_pred CceEEeeccccCccceeeeeEEEEcCCcCcCCCccc---hHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCc
Confidence 2 4332 4455589999999999987653211 1122211110 000111111 11 125899
Q ss_pred EEecccCCCCc-----hhhHHHHHHHHHHHHc
Q 009897 434 AILGYADSPSI-----LRTTEMRSKCLAHFLA 460 (523)
Q Consensus 434 ~~iG~~~~~~~-----~~~ae~Qa~~~a~~l~ 460 (523)
|++|......+ .+..-.||..+|+-+.
T Consensus 428 fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 428 FAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred eeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 99998765442 2556777777777666
No 76
>PRK13984 putative oxidoreductase; Provisional
Probab=99.81 E-value=7.3e-19 Score=190.90 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=107.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
...++|+|||+|++|+++|..|.+.|++|+|||+.+.+||.+....|. +...+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~------------------------~~~~~~~~ 336 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPS------------------------YRLPDEAL 336 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCc------------------------ccCCHHHH
Confidence 345899999999999999999999999999999999999876642221 11113444
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
....+..+++++ .++++++|.. + +..... ...||+||+||
T Consensus 337 ~~~~~~~~~~gv--~~~~~~~v~~---~---------------------------~~~~~~--------~~~yD~vilAt 376 (604)
T PRK13984 337 DKDIAFIEALGV--KIHLNTRVGK---D---------------------------IPLEEL--------REKHDAVFLST 376 (604)
T ss_pred HHHHHHHHHCCc--EEECCCEeCC---c---------------------------CCHHHH--------HhcCCEEEEEc
Confidence 555556777787 7888877631 0 111111 35799999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCc---------hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcC---CccC
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL---------AAELINGKRVTVIGFQKSAVDVAAEVANRNG---VRYP 255 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~---------~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~---~~~~ 255 (523)
|+. .|+.+++| |.+. . .+.+..++.. ......+++|+|||+|.+|+|+|..+++.+. ...+
T Consensus 377 Ga~--~~r~l~i~---G~~~-~-gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~ 449 (604)
T PRK13984 377 GFT--LGRSTRIP---GTDH-P-DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVN 449 (604)
T ss_pred CcC--CCccCCCC---CcCC-c-CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceE
Confidence 975 36777788 6442 1 1222222111 0011237999999999999999999987642 0124
Q ss_pred EEEEE
Q 009897 256 CTLLF 260 (523)
Q Consensus 256 Vt~~~ 260 (523)
|+++.
T Consensus 450 V~v~~ 454 (604)
T PRK13984 450 VKVTS 454 (604)
T ss_pred EEEec
Confidence 77764
No 77
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.81 E-value=1.2e-18 Score=187.46 Aligned_cols=163 Identities=23% Similarity=0.341 Sum_probs=107.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
...++|+||||||+||++|..|++.|++|+|+|+.+.+||.+.+..|..+ .+ .++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~-----------------------~~-~~~~ 190 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYR-----------------------LP-REVL 190 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCcc-----------------------CC-HHHH
Confidence 34589999999999999999999999999999999999998765322111 11 3344
Q ss_pred HHHHHHHHHhCCCCceEeccEE-EEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEe
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKV-TSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILC 186 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlA 186 (523)
+.-.+.+.++++ .+.+++.+ .++.. ... ...||+||+|
T Consensus 191 ~~~l~~~~~~Gv--~~~~~~~~~~~~~~-------------------------------~~~--------~~~~D~Vi~A 229 (564)
T PRK12771 191 DAEIQRILDLGV--EVRLGVRVGEDITL-------------------------------EQL--------EGEFDAVFVA 229 (564)
T ss_pred HHHHHHHHHCCC--EEEeCCEECCcCCH-------------------------------HHH--------HhhCCEEEEe
Confidence 444455667777 67777654 21111 000 2358999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCccEEecCCCCc----hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 187 IGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL----AAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 187 tG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~----~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
||+.. +..+.++ |.+ ..| +++...+.. ......+++|+|||+|.+|+|++..+.+.+. ..|+++.|.
T Consensus 230 tG~~~--~~~~~i~---g~~-~~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga--~~v~ii~r~ 300 (564)
T PRK12771 230 IGAQL--GKRLPIP---GED-AAG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGA--EEVTIVYRR 300 (564)
T ss_pred eCCCC--CCcCCCC---CCc-cCC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCC--CEEEEEEec
Confidence 99752 3344566 532 222 222221110 0023458999999999999999988887763 358999887
Q ss_pred ce
Q 009897 263 VH 264 (523)
Q Consensus 263 ~~ 264 (523)
+.
T Consensus 301 ~~ 302 (564)
T PRK12771 301 TR 302 (564)
T ss_pred Cc
Confidence 54
No 78
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.80 E-value=4.8e-18 Score=176.20 Aligned_cols=289 Identities=17% Similarity=0.224 Sum_probs=188.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHH---CCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLE---NGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNK 105 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (523)
+..+++|||.|++|..+..++++ .-++++||-..+.+ .|.-..+.. . ...--+.++
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~------nY~Ri~Ls~---------v------l~~~~~~ed 60 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP------NYNRILLSS---------V------LAGEKTAED 60 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc------cccceeecc---------c------cCCCccHHH
Confidence 45789999999999999999999 34689999877655 222222210 0 011113355
Q ss_pred HHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEE
Q 009897 106 VMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVIL 185 (523)
Q Consensus 106 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVl 185 (523)
+.-.-.++.++.++ +++.+.+|+.|++.. ..|++..+. .+.||+||+
T Consensus 61 i~l~~~dwy~~~~i--~L~~~~~v~~idr~~------------------------k~V~t~~g~-------~~~YDkLil 107 (793)
T COG1251 61 ISLNRNDWYEENGI--TLYTGEKVIQIDRAN------------------------KVVTTDAGR-------TVSYDKLII 107 (793)
T ss_pred HhccchhhHHHcCc--EEEcCCeeEEeccCc------------------------ceEEccCCc-------EeecceeEE
Confidence 55555677888888 899999999999865 678877776 899999999
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhh----hcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEe
Q 009897 186 CIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAE----LINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFK 261 (523)
Q Consensus 186 AtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~----~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r 261 (523)
|||+ .|.+|++| |.+.+. ++-...+.+... ....++-+|||+|.-|.|.|..|...+-. |++++-
T Consensus 108 ATGS---~pfi~PiP---G~~~~~--v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~---~~Vvh~ 176 (793)
T COG1251 108 ATGS---YPFILPIP---GSDLPG--VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGME---VTVVHI 176 (793)
T ss_pred ecCc---cccccCCC---CCCCCC--eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCc---eEEEee
Confidence 9995 58999899 766442 222222222111 12456789999999999999999998865 888765
Q ss_pred eceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccC
Q 009897 262 TVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISS 341 (523)
Q Consensus 262 ~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 341 (523)
.+. ++- +...+.....++
T Consensus 177 ~~~-lMe---------------------------------------rQLD~~ag~lL~---------------------- 194 (793)
T COG1251 177 APT-LME---------------------------------------RQLDRTAGRLLR---------------------- 194 (793)
T ss_pred cch-HHH---------------------------------------HhhhhHHHHHHH----------------------
Confidence 442 100 001111111221
Q ss_pred cceeecCcchhhhccCCCEEEEecC-ceEE----ecCcEEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhhcC
Q 009897 342 CMFTVLPRNFYDRVQGGGLSLMKSR-SFTF----CKNGLVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITG 416 (523)
Q Consensus 342 ~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~----~~~~v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~ 416 (523)
..+.+-+++++.+. ..++ ...++.|+||+. +++|.||+|+|++|+..+...-+....+..+.
T Consensus 195 -----------~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~-i~ad~VV~a~GIrPn~ela~~aGlavnrGIvv- 261 (793)
T COG1251 195 -----------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTE-IPADLVVMAVGIRPNDELAKEAGLAVNRGIVV- 261 (793)
T ss_pred -----------HHHHhhcceeecccchhhhhcCcceeeEeecCCCc-ccceeEEEecccccccHhHHhcCcCcCCCeee-
Confidence 22223334444332 1222 234589999999 99999999999999987654332222222222
Q ss_pred CCcccccccccCCCCCeEEecccCC-----CCchhhHHHHHHHHHHHHcCCC
Q 009897 417 SSAPLYREGIHPQIPQLAILGYADS-----PSILRTTEMRSKCLAHFLAGNS 463 (523)
Q Consensus 417 ~~~~ly~~~~~~~~p~l~~iG~~~~-----~~~~~~ae~Qa~~~a~~l~g~~ 463 (523)
+ ..+.++.|+||++|-+.. ......+..|++.+|.++.+..
T Consensus 262 ---n---d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~ 307 (793)
T COG1251 262 ---N---DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGE 307 (793)
T ss_pred ---c---ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCc
Confidence 2 234568999999996532 2234567789999999998874
No 79
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.80 E-value=4.7e-18 Score=178.97 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=109.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||...+..|. +....++..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~------------------------~~~~~~~~~ 197 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPN------------------------MKLDKAIVD 197 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCC------------------------ccCCHHHHH
Confidence 45899999999999999999999999999999999898876542111 111134555
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
+..+.++++++ .+++++.|. . . ++. +. ....||.||+|||
T Consensus 198 ~~~~~~~~~Gv--~~~~~~~v~---~-~--------------------------~~~-~~-------~~~~~d~VilAtG 237 (485)
T TIGR01317 198 RRIDLLSAEGI--DFVTNTEIG---V-D--------------------------ISA-DE-------LKEQFDAVVLAGG 237 (485)
T ss_pred HHHHHHHhCCC--EEECCCEeC---C-c--------------------------cCH-HH-------HHhhCCEEEEccC
Confidence 55566677787 778877663 1 0 000 01 1356999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecC-------------CCCc-hhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCcc
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSM-------------NDDL-AAELINGKRVTVIGFQKSAVDVAAEVANRNGVRY 254 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~-------------~~~~-~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 254 (523)
+. .|..+++| |.+. .|. .... .... ......+|+|+|||+|.+|+|+|..+.+.+. .
T Consensus 238 a~--~~~~l~i~---G~~~-~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga--~ 308 (485)
T TIGR01317 238 AT--KPRDLPIP---GREL-KGI-HYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA--A 308 (485)
T ss_pred CC--CCCcCCCC---CcCC-CCc-EeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC--C
Confidence 75 37777788 6432 221 1110 0000 0012468999999999999999888777664 3
Q ss_pred CEEEEEeece
Q 009897 255 PCTLLFKTVH 264 (523)
Q Consensus 255 ~Vt~~~r~~~ 264 (523)
.|+++.+.+.
T Consensus 309 ~V~vv~~~~~ 318 (485)
T TIGR01317 309 SVHQFEIMPK 318 (485)
T ss_pred EEEEEEecCC
Confidence 5999987654
No 80
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.79 E-value=5.6e-18 Score=175.98 Aligned_cols=167 Identities=16% Similarity=0.192 Sum_probs=110.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHH--CCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLE--NGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNK 105 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (523)
...++|+|||||||||+||..|++ .|++|+|||+.+.+||...+.. .+.++....
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~~~~k~ 80 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDHPETKN 80 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCcchhHH
Confidence 345899999999999999999987 7999999999999999776411 112233355
Q ss_pred HHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEE
Q 009897 106 VMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVIL 185 (523)
Q Consensus 106 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVl 185 (523)
+..++..+.+..++ .++.|++|- ..+++.+. ...||+||+
T Consensus 81 v~~~~~~~~~~~~v--~~~~nv~vg------------------------------~dvtl~~L--------~~~yDaVIl 120 (491)
T PLN02852 81 VTNQFSRVATDDRV--SFFGNVTLG------------------------------RDVSLSEL--------RDLYHVVVL 120 (491)
T ss_pred HHHHHHHHHHHCCe--EEEcCEEEC------------------------------ccccHHHH--------hhhCCEEEE
Confidence 66667777776555 455554441 11233222 246999999
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCCccEEecCCC----------Cchh-hhcCCCEEEEEcCCCCHHHHHHHHHHhc----
Q 009897 186 CIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMND----------DLAA-ELINGKRVTVIGFQKSAVDVAAEVANRN---- 250 (523)
Q Consensus 186 AtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~----------~~~~-~~~~~k~V~VvG~G~sg~d~a~~l~~~~---- 250 (523)
|||+. .++.+++| |.+. . .++...++ .... ....+++|+|||+|.+|+|+|..|++.+
T Consensus 121 AtGa~--~~~~l~Ip---G~d~-~-gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~ 193 (491)
T PLN02852 121 AYGAE--SDRRLGIP---GEDL-P-GVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELA 193 (491)
T ss_pred ecCCC--CCCCCCCC---CCCC-C-CeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccc
Confidence 99975 24566777 6432 1 12222111 1000 1235899999999999999999988640
Q ss_pred --------------CCccCEEEEEeece
Q 009897 251 --------------GVRYPCTLLFKTVH 264 (523)
Q Consensus 251 --------------~~~~~Vt~~~r~~~ 264 (523)
...++|+++.|+..
T Consensus 194 ~tdi~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 194 STDIAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred cccccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 01156999999864
No 81
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.3e-18 Score=161.89 Aligned_cols=177 Identities=21% Similarity=0.286 Sum_probs=135.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.+||+|||+||+|-+||.+.+++|++.-++- +++||+-..+.. + -.|- .-.+..+.++...
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~---I------ENfI--------sv~~teGpkl~~a 271 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMG---I------ENFI--------SVPETEGPKLAAA 271 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccc---h------hhee--------ccccccchHHHHH
Confidence 3899999999999999999999999876653 347887654211 0 0011 1223456889999
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
|++..++|++ .+.--.+.+++.+.. . ..+-..|++.+|. .+.++.||+|||+
T Consensus 272 le~Hv~~Y~v--Dimn~qra~~l~~a~--~-----------------~~~l~ev~l~nGa-------vLkaktvIlstGA 323 (520)
T COG3634 272 LEAHVKQYDV--DVMNLQRASKLEPAA--V-----------------EGGLIEVELANGA-------VLKARTVILATGA 323 (520)
T ss_pred HHHHHhhcCc--hhhhhhhhhcceecC--C-----------------CCccEEEEecCCc-------eeccceEEEecCc
Confidence 9999999988 555545667777653 0 1356889999987 8999999999997
Q ss_pred cCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 190 YSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 190 ~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
.. +-.++| |.+.|..+.+..+..++. ..|+||+|+|||||.||+|.|..|+-...+ ||++.-.|
T Consensus 324 rW---Rn~nvP---GE~e~rnKGVayCPHCDG-PLF~gK~VAVIGGGNSGvEAAIDLAGiv~h---VtllEF~~ 387 (520)
T COG3634 324 RW---RNMNVP---GEDEYRNKGVAYCPHCDG-PLFKGKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAP 387 (520)
T ss_pred ch---hcCCCC---chHHHhhCCeeeCCCCCC-cccCCceEEEECCCcchHHHHHhHHhhhhe---eeeeecch
Confidence 63 334567 988898888888888877 579999999999999999999999998765 99986544
No 82
>PRK09897 hypothetical protein; Provisional
Probab=99.75 E-value=1.5e-16 Score=167.26 Aligned_cols=194 Identities=18% Similarity=0.240 Sum_probs=122.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CceEEEccCCCCCcc--cccccCcccccCCcCceeeCCCC-----CCC-------
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG--FKPIVFEARSGIGGV--WSQTIESTKLQTPKSFYQFSDFA-----WPN------- 94 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~--w~~~~~~~~~~~~~~~~~~~~~~-----~~~------- 94 (523)
++|+||||||+|+++|.+|.+.+ ++|+|||++..+|.. |...-++..++++...++.+..+ |..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999999864 589999998888844 33323333333222222211111 100
Q ss_pred ---------CCCCCCCChhHHHHHHHHHHHHh-------CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCC
Q 009897 95 ---------SVTETFPDHNKVMEYLQAYAAHF-------NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSS 158 (523)
Q Consensus 95 ---------~~~~~~~~~~~~~~yl~~~~~~~-------~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
.....|+++..+.+|++++.+.+ +..-.++.+++|++++...
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---------------------- 139 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN---------------------- 139 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC----------------------
Confidence 00246788888888887765543 2111455688999998764
Q ss_pred CCeEEEEeecccCCcceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCc-hhhhcCCCEEEEEcCCC
Q 009897 159 GKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDL-AAELINGKRVTVIGFQK 237 (523)
Q Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~-~~~~~~~k~V~VvG~G~ 237 (523)
++|.|++.++. ..+.+|+||+|||+. .|..+. +...| + ...|.. ......+.+|+|+|.|.
T Consensus 140 ~g~~V~t~~gg------~~i~aD~VVLAtGh~--~p~~~~-----~~~~y----i-~~pw~~~~~~~i~~~~V~I~GtGL 201 (534)
T PRK09897 140 AGVMLATNQDL------PSETFDLAVIATGHV--WPDEEE-----ATRTY----F-PSPWSGLMEAKVDACNVGIMGTSL 201 (534)
T ss_pred CEEEEEECCCC------eEEEcCEEEECCCCC--CCCCCh-----hhccc----c-CCCCcchhhcCCCCCeEEEECCCH
Confidence 56888875431 178999999999975 243321 11111 1 111111 11123478999999999
Q ss_pred CHHHHHHHHHHhcC------------------CccCEEEEEeece
Q 009897 238 SAVDVAAEVANRNG------------------VRYPCTLLFKTVH 264 (523)
Q Consensus 238 sg~d~a~~l~~~~~------------------~~~~Vt~~~r~~~ 264 (523)
|++|++..|...+. ...+++++.|+..
T Consensus 202 t~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 202 SGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HHHHHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 99999999986521 2356999999864
No 83
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.1e-16 Score=146.16 Aligned_cols=200 Identities=17% Similarity=0.270 Sum_probs=126.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEcc---CC-----CCCccccc--ccCcccccCCc----CceeeCCCCCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEA---RS-----GIGGVWSQ--TIESTKLQTPK----SFYQFSDFAWP 93 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~---~~-----~~GG~w~~--~~~~~~~~~~~----~~~~~~~~~~~ 93 (523)
...+|++|||||.+||++|++++..|.+|.++|- .+ .+||++.+ +.|........ .+..-..+.|.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3569999999999999999999999999999982 22 24555554 33322111100 00011123343
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhCCCCceEecc-EEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 94 NSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDT-KVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 94 ~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
-....-.+....+.+-.++.++..+---++.++. +|.-+..-. .|. +..++......
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~Nsyg-----------------eFv--~~h~I~at~~~--- 154 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYG-----------------EFV--DPHKIKATNKK--- 154 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecce-----------------eec--ccceEEEecCC---
Confidence 2212344566777777777777665422333322 333333221 111 22334433322
Q ss_pred cceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCC
Q 009897 173 SATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNGV 252 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~ 252 (523)
++.+.++++.+||||| .+|++|+|| |...+ .+.|.+.... ...+.+-+|||+|..|.|+|..|+..+-.
T Consensus 155 gk~~~~ta~~fvIatG---~RPrYp~Ip---G~~Ey---~ITSDDlFsl--~~~PGkTLvVGa~YVaLECAgFL~gfg~~ 223 (503)
T KOG4716|consen 155 GKERFLTAENFVIATG---LRPRYPDIP---GAKEY---GITSDDLFSL--PYEPGKTLVVGAGYVALECAGFLKGFGYD 223 (503)
T ss_pred CceEEeecceEEEEec---CCCCCCCCC---Cceee---eecccccccc--cCCCCceEEEccceeeeehhhhHhhcCCC
Confidence 2356899999999999 679999999 86543 4666666543 24567789999999999999999998865
Q ss_pred ccCEEEEEeec
Q 009897 253 RYPCTLLFKTV 263 (523)
Q Consensus 253 ~~~Vt~~~r~~ 263 (523)
||++.|+-
T Consensus 224 ---vtVmVRSI 231 (503)
T KOG4716|consen 224 ---VTVMVRSI 231 (503)
T ss_pred ---cEEEEEEe
Confidence 99999963
No 84
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.61 E-value=4.8e-14 Score=144.30 Aligned_cols=43 Identities=35% Similarity=0.419 Sum_probs=39.1
Q ss_pred CCCcEEEECCChHHHHHHHHHH-HCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTL-ENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~-~~g~~v~v~e~~~~~GG~w~~ 71 (523)
..++|+||||||||+.||..|+ +.|++|+|||+.+.+||.+++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4589999999999999999876 569999999999999999886
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.60 E-value=2.9e-14 Score=155.52 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
...++|+|||||||||+||..|++.|++|+|||+....|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 45689999999999999999999999999999997665553
No 86
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.59 E-value=8.4e-14 Score=134.08 Aligned_cols=175 Identities=22% Similarity=0.280 Sum_probs=109.7
Q ss_pred cceeeccCCCCCCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCC
Q 009897 18 SCFTVFSSGPKMERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNS 95 (523)
Q Consensus 18 ~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (523)
....+++++... .+|+|||+||||+.+|..|+++ +++|+|+|+.+.++|..++
T Consensus 9 ~~~r~~s~qs~~-p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy------------------------ 63 (468)
T KOG1800|consen 9 SFCRHFSTQSST-PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY------------------------ 63 (468)
T ss_pred HHHHHhhhccCC-ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee------------------------
Confidence 333344444322 4899999999999999999994 6899999999988776654
Q ss_pred CCCCCCChhHHH---HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 96 VTETFPDHNKVM---EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 96 ~~~~~~~~~~~~---~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
.-.|.+.++. ..+...+++..+ .+.-|.+|- -.|.+.+-
T Consensus 64 --GVAPDHpEvKnvintFt~~aE~~rf--sf~gNv~vG------------------------------~dvsl~eL---- 105 (468)
T KOG1800|consen 64 --GVAPDHPEVKNVINTFTKTAEHERF--SFFGNVKVG------------------------------RDVSLKEL---- 105 (468)
T ss_pred --ccCCCCcchhhHHHHHHHHhhccce--EEEecceec------------------------------ccccHHHH----
Confidence 2223334443 444455554333 233343330 11333332
Q ss_pred cceeEEEeCEEEEeeeecCCCCCCCCCCCCCCCCC---CCccEEecCC-----CCchhhhcCCCEEEEEcCCCCHHHHHH
Q 009897 173 SATEAYQVDFVILCIGRYSDLPNTPDFPMNKGPEV---FDGKVLHSMN-----DDLAAELINGKRVTVIGFQKSAVDVAA 244 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~---~~g~~~h~~~-----~~~~~~~~~~k~V~VvG~G~sg~d~a~ 244 (523)
+-.||+||+|.|+. .++..+|| |.+. +.++.+-... ......++.+.+|+|||.|..|+|+|.
T Consensus 106 ----~~~ydavvLaYGa~--~dR~L~IP---Ge~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvAR 176 (468)
T KOG1800|consen 106 ----TDNYDAVVLAYGAD--GDRRLDIP---GEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVAR 176 (468)
T ss_pred ----hhcccEEEEEecCC--CCcccCCC---CcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhh
Confidence 45799999999997 48888999 6541 2111111111 111112456899999999999999999
Q ss_pred HHHHhcCC-------------------ccCEEEEEeece
Q 009897 245 EVANRNGV-------------------RYPCTLLFKTVH 264 (523)
Q Consensus 245 ~l~~~~~~-------------------~~~Vt~~~r~~~ 264 (523)
.|...... -+.|+++.|+..
T Consensus 177 iLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 177 ILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred hhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCc
Confidence 88764211 256888888754
No 87
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.58 E-value=1e-13 Score=147.59 Aligned_cols=154 Identities=23% Similarity=0.319 Sum_probs=107.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++|+|||.||+||+||.+|-+.|+.|+|+||++.+||...+-.|.+.++ ..+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkld------------------------k~vv~ 1839 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLD------------------------KFVVQ 1839 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchh------------------------HHHHH
Confidence 348999999999999999999999999999999999999988866665542 33555
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
.-.+...+-|+ .+..|+++- ..|....- .-..|+||+|+|
T Consensus 1840 rrv~ll~~egi--~f~tn~eig------------------------------k~vs~d~l--------~~~~daiv~a~g 1879 (2142)
T KOG0399|consen 1840 RRVDLLEQEGI--RFVTNTEIG------------------------------KHVSLDEL--------KKENDAIVLATG 1879 (2142)
T ss_pred HHHHHHHhhCc--eEEeecccc------------------------------ccccHHHH--------hhccCeEEEEeC
Confidence 55556666677 566666552 11322222 357999999999
Q ss_pred ecCCCCCCCCCCCCCCCCC----CCccEEecC-------CCCchhhhcCCCEEEEEcCCCCHHHHHHHHHHhcC
Q 009897 189 RYSDLPNTPDFPMNKGPEV----FDGKVLHSM-------NDDLAAELINGKRVTVIGFQKSAVDVAAEVANRNG 251 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~----~~g~~~h~~-------~~~~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~ 251 (523)
+. .|+-.++| |-+. |.-..+|.. .........+||+|+|||||.+|.|+...-.+.+.
T Consensus 1880 st--~prdlpv~---grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~ 1948 (2142)
T KOG0399|consen 1880 ST--TPRDLPVP---GRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGC 1948 (2142)
T ss_pred CC--CCcCCCCC---CccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhcc
Confidence 86 58877788 6442 211222222 00000023469999999999999998877776664
No 88
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.56 E-value=2.8e-14 Score=147.02 Aligned_cols=159 Identities=26% Similarity=0.337 Sum_probs=114.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++|+||||||+||++|..|.+.|++|+++|+.+..||...+..|..++ ..++.+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl------------------------~k~i~d 177 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKL------------------------PKDILD 177 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhc------------------------cchHHH
Confidence 44899999999999999999999999999999999999988875443322 246777
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
...++.++.|+ .++.+++|- ..++...- ...||+|++|+|
T Consensus 178 ~~i~~l~~~Gv--~~~~~~~vG------------------------------~~it~~~L--------~~e~Dav~l~~G 217 (457)
T COG0493 178 RRLELLERSGV--EFKLNVRVG------------------------------RDITLEEL--------LKEYDAVFLATG 217 (457)
T ss_pred HHHHHHHHcCe--EEEEcceEC------------------------------CcCCHHHH--------HHhhCEEEEecc
Confidence 77777888886 788887763 11222222 235699999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccEEecC-CCC-------------chhhhcCCCEEEEEcCCCCHHHHHHHHHHhcCCcc
Q 009897 189 RYSDLPNTPDFPMNKGPEVFDGKVLHSM-NDD-------------LAAELINGKRVTVIGFQKSAVDVAAEVANRNGVRY 254 (523)
Q Consensus 189 ~~s~~p~~p~~p~~~g~~~~~g~~~h~~-~~~-------------~~~~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~ 254 (523)
.. .|+..++| |.+. .-+|.. +|. .......+|+|+|||+|.+++|++......+. +
T Consensus 218 ~~--~~~~l~i~---g~d~---~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga--~ 287 (457)
T COG0493 218 AG--KPRPLDIP---GEDA---KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGA--K 287 (457)
T ss_pred cc--CCCCCCCC---CcCC---CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCC--e
Confidence 85 68888888 5441 112221 111 01122346999999999999999988888775 4
Q ss_pred CEEEEEe
Q 009897 255 PCTLLFK 261 (523)
Q Consensus 255 ~Vt~~~r 261 (523)
+|+.+.|
T Consensus 288 ~v~~~~~ 294 (457)
T COG0493 288 SVTCFYR 294 (457)
T ss_pred EEEEecc
Confidence 6887753
No 89
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.51 E-value=5.5e-13 Score=138.46 Aligned_cols=283 Identities=17% Similarity=0.167 Sum_probs=164.6
Q ss_pred EEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 33 IAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 33 v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++|||+|++|+++|..|++. +.+++++....... +...+.+..........+.+..+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 60 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS--------------------YYRCPLSLYVGGGIASLEDLRYPP 60 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC--------------------CCCCccchHHhcccCCHHHhcccc
Confidence 58999999999999999885 45788777765431 111111100001111111121111
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
. +....++ .+..+++|+.++... ..|.+.++ .+.||++|+|||..
T Consensus 61 ~-~~~~~~i--~~~~~~~v~~id~~~------------------------~~v~~~~g--------~~~yd~LvlatGa~ 105 (415)
T COG0446 61 R-FNRATGI--DVRTGTEVTSIDPEN------------------------KVVLLDDG--------EIEYDYLVLATGAR 105 (415)
T ss_pred h-hHHhhCC--EEeeCCEEEEecCCC------------------------CEEEECCC--------cccccEEEEcCCCc
Confidence 1 2245566 788889999998764 45665554 68999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCCccEEecCCCCchhhhc-----CCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeecee
Q 009897 191 SDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAAELI-----NGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHW 265 (523)
Q Consensus 191 s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~~~~-----~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~ 265 (523)
|..++ . . +...+.......+. ..+ ..++|+|||+|..|+++|..+.+.+.+ |+++...+.+
T Consensus 106 ---~~~~~-~---~---~~~~~~~~~~~~~~-~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~ 171 (415)
T COG0446 106 ---PRPPP-I---S---DWEGVVTLRLREDA-EALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRL 171 (415)
T ss_pred ---ccCCC-c---c---ccCceEEECCHHHH-HHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEccccc
Confidence 55543 1 0 11112222221111 111 148999999999999999999998854 9999987652
Q ss_pred EecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCccee
Q 009897 266 MVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFT 345 (523)
Q Consensus 266 ~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~ 345 (523)
. +... ...
T Consensus 172 ~-~~~~-----------------------------------~~~------------------------------------ 179 (415)
T COG0446 172 G-GQLL-----------------------------------DPE------------------------------------ 179 (415)
T ss_pred c-hhhh-----------------------------------hHH------------------------------------
Confidence 2 1110 000
Q ss_pred ecCcchhhhccCCCEEEEecC-ceEEecCc-------EEEcCCceeeeccEEEEecCCCCCccccccccchhhhhhhcCC
Q 009897 346 VLPRNFYDRVQGGGLSLMKSR-SFTFCKNG-------LVIDGETTPLVTDIVIFATGYKSDEKLKNIFKSTYFQKQITGS 417 (523)
Q Consensus 346 ~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~-------v~l~dG~~~~~~D~VI~ATG~~~~~~l~~~~~~~~l~~~~~~~ 417 (523)
+.+.+.+.++..+|+++.+. +.+++.+. +...++.. +++|.+++++|.+|+..+.+..... ......
T Consensus 180 -~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~g~~p~~~l~~~~~~~---~~~~~g 254 (415)
T COG0446 180 -VAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE-IKADLVIIGPGERPNVVLANDALPG---LALAGG 254 (415)
T ss_pred -HHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcE-EEeeEEEEeecccccHHHHhhCccc---eeccCC
Confidence 11112233344446665554 56665432 57778888 9999999999999985543321100 000010
Q ss_pred CcccccccccC-CCCCeEEecccCCC-----------CchhhHHHHHHHHHHHHcCC
Q 009897 418 SAPLYREGIHP-QIPQLAILGYADSP-----------SILRTTEMRSKCLAHFLAGN 462 (523)
Q Consensus 418 ~~~ly~~~~~~-~~p~l~~iG~~~~~-----------~~~~~ae~Qa~~~a~~l~g~ 462 (523)
..... ..+.+ ..+++|++|..... ..+..+..|++.++..+.+.
T Consensus 255 ~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 255 AVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred CEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 01122 22233 48999999974321 12357888888888888864
No 90
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.42 E-value=2.5e-11 Score=120.58 Aligned_cols=44 Identities=30% Similarity=0.566 Sum_probs=40.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
+++++++|||||++||+||..|++.|++|.++|+.+.+||....
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 36799999999999999999999999999999999999998654
No 91
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.40 E-value=3.8e-12 Score=113.42 Aligned_cols=127 Identities=25% Similarity=0.359 Sum_probs=96.2
Q ss_pred EEECCChHHHHHHHHHHHC-----CCceEEEccCCCC-Ccccccc-cCcccccCCcCceeeCCC-C------C----C--
Q 009897 34 AIIGAGVSGLLACKYTLEN-----GFKPIVFEARSGI-GGVWSQT-IESTKLQTPKSFYQFSDF-A------W----P-- 93 (523)
Q Consensus 34 ~IIGaG~aGl~aA~~l~~~-----g~~v~v~e~~~~~-GG~w~~~-~~~~~~~~~~~~~~~~~~-~------~----~-- 93 (523)
+|||+|++|++++.+|.+. ..+|+|||+.+.- |+.|... .+...+|++...|+...- | | .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999997 4689999996653 4688775 778889998888766422 1 0 0
Q ss_pred ---CCCCCCCCChhHHHHHHHHHHHHhC--CCC--ce-EeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEE
Q 009897 94 ---NSVTETFPDHNKVMEYLQAYAAHFN--LFP--SI-KFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTV 165 (523)
Q Consensus 94 ---~~~~~~~~~~~~~~~yl~~~~~~~~--l~~--~i-~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 165 (523)
......|+++..+.+||+++.+.+- +.. .+ +...+|++|+... ++|.|.+
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~----------------------~~~~v~~ 138 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD----------------------DGYRVVT 138 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC----------------------CcEEEEE
Confidence 0113588999999999998877653 111 22 3467899999875 5588988
Q ss_pred eecccCCcceeEEEeCEEEEeeee
Q 009897 166 QEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 166 ~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
.++. .+.||.||+|||+
T Consensus 139 ~~g~-------~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 139 ADGQ-------SIRADAVVLATGH 155 (156)
T ss_pred CCCC-------EEEeCEEEECCCC
Confidence 8876 8999999999995
No 92
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.34 E-value=4.2e-12 Score=124.66 Aligned_cols=137 Identities=19% Similarity=0.349 Sum_probs=100.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC--------ccccc----ccCcccccCC---cCce----eeC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG--------GVWSQ----TIESTKLQTP---KSFY----QFS 88 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--------G~w~~----~~~~~~~~~~---~~~~----~~~ 88 (523)
|+.+||+|||||||||.||..+.+.|.+|+|||+.+.+| |.++. .+.....+.| +..+ .|.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 456899999999999999999999999999999999875 44443 1222233333 1111 111
Q ss_pred -----------CCCCCC-CCCCCCCC---hhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCC
Q 009897 89 -----------DFAWPN-SVTETFPD---HNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGK 153 (523)
Q Consensus 89 -----------~~~~~~-~~~~~~~~---~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 153 (523)
+.++.+ ...+.||. .+.+.+-|..-+++.++ .++.+++|.+++.++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~~----------------- 141 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKDD----------------- 141 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEecC-----------------
Confidence 112111 11355554 67888888888999999 899999999999874
Q ss_pred CCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecCCCCCC
Q 009897 154 PFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNT 196 (523)
Q Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~ 196 (523)
..+.|.++++. ++.||.||+|||..| .|++
T Consensus 142 -----~~f~l~t~~g~-------~i~~d~lilAtGG~S-~P~l 171 (408)
T COG2081 142 -----SGFRLDTSSGE-------TVKCDSLILATGGKS-WPKL 171 (408)
T ss_pred -----ceEEEEcCCCC-------EEEccEEEEecCCcC-CCCC
Confidence 56899988885 899999999999884 5643
No 93
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.22 E-value=3.2e-10 Score=104.36 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=102.8
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 32 KIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
+.+|||||+||.++|.+|+.. ..+++++-.++.+ .....-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v--------------------------------ksvtn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV--------------------------------KSVTNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH--------------------------------HHHhhHHHHHHH
Confidence 368999999999999999984 4578888776543 112233566666
Q ss_pred HHHHHHHh-CCCC-ceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 110 LQAYAAHF-NLFP-SIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 110 l~~~~~~~-~l~~-~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
++++--+- +... .-.|..-+.++.... .....++++++. .+.|++|++|+
T Consensus 49 lekfdv~eq~~~elg~~f~~~~~~v~~~~---------------------s~ehci~t~~g~-------~~ky~kKOG~t 100 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFRRFLNDVVTWD---------------------SSEHCIHTQNGE-------KLKYFKLCLCT 100 (334)
T ss_pred HHhcCccccchhhhcccHHHHHHhhhhhc---------------------cccceEEecCCc-------eeeEEEEEEec
Confidence 65542111 1000 011222233322221 234678888886 89999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCccEEecCCCCchh----hhcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 188 GRYSDLPNTPDFPMNKGPEVFDGKVLHSMNDDLAA----ELINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~~~g~~~h~~~~~~~~----~~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
|+ +|..- .. |.+ .+++-..+-.... ...+.|.|.|+|.|.+++|.+.++.... |||....+
T Consensus 101 g~---kPklq-~E---~~n---~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~n-----v~w~ikd~ 165 (334)
T KOG2755|consen 101 GY---KPKLQ-VE---GIN---PKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKILN-----VTWKIKDE 165 (334)
T ss_pred CC---Cccee-ec---CCC---ceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcce-----eEEEecch
Confidence 94 46643 11 212 2344444433321 2346899999999999999999998753 88888765
Q ss_pred eeEecCccCCC
Q 009897 264 HWMVPDYFLWS 274 (523)
Q Consensus 264 ~~~~p~~~~~~ 274 (523)
|+...+...|
T Consensus 166 -~IsaTFfdpG 175 (334)
T KOG2755|consen 166 -GISATFFDPG 175 (334)
T ss_pred -hhhhcccCcc
Confidence 4554443333
No 94
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.21 E-value=1.9e-10 Score=112.14 Aligned_cols=249 Identities=16% Similarity=0.214 Sum_probs=141.2
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCcccccccCcccccCCcCceeeCC---------CCCCCC----
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSD---------FAWPNS---- 95 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~---------~~~~~~---- 95 (523)
...+|||+|.+..+++...... +.+|.++...+.+ |.++--.+++++-+.+ -+|.-.
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepel--------PYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsi 250 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL--------PYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSI 250 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccC--------cccCCCcchhceecCCCChhhheeecccCCcccee
Confidence 5689999999998888777664 5678888765543 2233222232222211 111100
Q ss_pred ---CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 96 ---VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 96 ---~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
....|.+.+++-. +.+-|+ -+..+.+|+.|+-.+ ..|.+++|.
T Consensus 251 ffepd~FfvspeDLp~-----~~nGGv--Avl~G~kvvkid~~d------------------------~~V~LnDG~--- 296 (659)
T KOG1346|consen 251 FFEPDGFFVSPEDLPK-----AVNGGV--AVLRGRKVVKIDEED------------------------KKVILNDGT--- 296 (659)
T ss_pred EecCCcceeChhHCcc-----cccCce--EEEeccceEEeeccc------------------------CeEEecCCc---
Confidence 0122223222211 112233 345566777776543 568888887
Q ss_pred cceeEEEeCEEEEeeeecCCCCCCCC-CCCCCCCCCCC-ccEEecC-CCCchhhh-cCCCEEEEEcCCCCHHHHHHHHHH
Q 009897 173 SATEAYQVDFVILCIGRYSDLPNTPD-FPMNKGPEVFD-GKVLHSM-NDDLAAEL-INGKRVTVIGFQKSAVDVAAEVAN 248 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s~~p~~p~-~p~~~g~~~~~-g~~~h~~-~~~~~~~~-~~~k~V~VvG~G~sg~d~a~~l~~ 248 (523)
++.||+++||||.. |+-.. +... +.+... -..+|.- +|+..... ..-++|.|||+|..|.|+|..|.+
T Consensus 297 ----~I~YdkcLIATG~~---Pk~l~~~~~A-~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~r 368 (659)
T KOG1346|consen 297 ----TIGYDKCLIATGVR---PKKLQVFEEA-SEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKR 368 (659)
T ss_pred ----EeehhheeeecCcC---cccchhhhhc-CHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHH
Confidence 99999999999965 55433 2200 122111 1123322 33322111 124799999999999999999998
Q ss_pred hcC-CccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchHHHHHHHHHHHHHHhcCCcccC
Q 009897 249 RNG-VRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPLLWLSSKVVESCLKWTFPLKKY 327 (523)
Q Consensus 249 ~~~-~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (523)
... .+.+|+.+.-... +. .+.+-.|
T Consensus 369 k~r~~g~eV~QvF~Ek~---nm-----------------------------------------~kiLPey---------- 394 (659)
T KOG1346|consen 369 KYRNEGVEVHQVFEEKY---NM-----------------------------------------EKILPEY---------- 394 (659)
T ss_pred hhhccCcEEEEeecccC---Ch-----------------------------------------hhhhHHH----------
Confidence 654 2344655543211 00 0111111
Q ss_pred CCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEe--cCc--EEEcCCceeeeccEEEEecCCCCCcccc
Q 009897 328 NMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFC--KNG--LVIDGETTPLVTDIVIFATGYKSDEKLK 402 (523)
Q Consensus 328 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~--~~~--v~l~dG~~~~~~D~VI~ATG~~~~~~l~ 402 (523)
++.--.+.++.++|.|+.+. |.++. .+. +.|+||.+ +..|+||.|+|-.||.++.
T Consensus 395 -------------------ls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~-l~tD~vVvavG~ePN~ela 454 (659)
T KOG1346|consen 395 -------------------LSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSE-LRTDLVVVAVGEEPNSELA 454 (659)
T ss_pred -------------------HHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCe-eeeeeEEEEecCCCchhhc
Confidence 11112356778888888776 44432 222 67789999 9999999999999998765
Q ss_pred c
Q 009897 403 N 403 (523)
Q Consensus 403 ~ 403 (523)
.
T Consensus 455 ~ 455 (659)
T KOG1346|consen 455 E 455 (659)
T ss_pred c
Confidence 4
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.20 E-value=8.1e-11 Score=120.48 Aligned_cols=134 Identities=28% Similarity=0.450 Sum_probs=76.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC--------ccccccc-----Cccccc---CCcCce----eeC--
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG--------GVWSQTI-----ESTKLQ---TPKSFY----QFS-- 88 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--------G~w~~~~-----~~~~~~---~~~~~~----~~~-- 88 (523)
|||+|||||||||.||..|++.|.+|+|+|+++.+| |.++.+. ...... .+.... .|.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 689999999999999999999999999999999885 3443211 011111 010000 000
Q ss_pred ---------CCCCC-CCCCCCCC---ChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCC
Q 009897 89 ---------DFAWP-NSVTETFP---DHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPF 155 (523)
Q Consensus 89 ---------~~~~~-~~~~~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
+.++. +...+.|| ...++.+-|...+++.++ .++++++|.++....
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~~------------------- 139 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKKE------------------- 139 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEET-------------------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeecC-------------------
Confidence 11111 01122333 467888889999999999 899999999999865
Q ss_pred CCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecCCCCC
Q 009897 156 SSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPN 195 (523)
Q Consensus 156 ~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~ 195 (523)
++.|.|.+++.. ++.+|.||+|||..| .|.
T Consensus 140 --~~~f~v~~~~~~-------~~~a~~vILAtGG~S-~p~ 169 (409)
T PF03486_consen 140 --DGVFGVKTKNGG-------EYEADAVILATGGKS-YPK 169 (409)
T ss_dssp --TEEEEEEETTTE-------EEEESEEEE----SS-SGG
T ss_pred --CceeEeeccCcc-------cccCCEEEEecCCCC-ccc
Confidence 244888884443 899999999999873 443
No 96
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.15 E-value=3e-10 Score=109.14 Aligned_cols=141 Identities=21% Similarity=0.283 Sum_probs=89.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC-ccccc--ccCcccccCCc-CceeeCCCCCCCCCC-CCCCCh
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG-GVWSQ--TIESTKLQTPK-SFYQFSDFAWPNSVT-ETFPDH 103 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-G~w~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 103 (523)
.++||+||||||+||++|..|++.|++|+|+|+...+| |.|.. .++.+.+..+. ..+.-.+.++..... .....+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 46899999999999999999999999999999999886 45543 22222221111 111112233321101 112356
Q ss_pred hHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCC-CCeEEEEeec----ccCCcceeEE
Q 009897 104 NKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSS-GKWNVTVQEA----RNVSSATEAY 178 (523)
Q Consensus 104 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~----~~~~~~~~~~ 178 (523)
.++.+.|.+.+.+.+. .+.++++|+++...+ + . .-.-|.++.. .....+..++
T Consensus 100 ~el~~~L~~~a~e~GV--~I~~~t~V~dli~~~--~------------------~~~V~GVv~~~~~v~~~g~~~d~~~i 157 (254)
T TIGR00292 100 AEFISTLASKALQAGA--KIFNGTSVEDLITRD--D------------------TVGVAGVVINWSAIELAGLHVDPLTQ 157 (254)
T ss_pred HHHHHHHHHHHHHcCC--EEECCcEEEEEEEeC--C------------------CCceEEEEeCCccccccCCCCCCEEE
Confidence 7888899888988887 899999999988754 0 0 0111222211 0000123479
Q ss_pred EeCEEEEeeeecC
Q 009897 179 QVDFVILCIGRYS 191 (523)
Q Consensus 179 ~~d~vVlAtG~~s 191 (523)
.++.||.|||+.+
T Consensus 158 ~Ak~VVdATG~~a 170 (254)
T TIGR00292 158 RSRVVVDATGHDA 170 (254)
T ss_pred EcCEEEEeecCCc
Confidence 9999999999763
No 97
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.14 E-value=2.8e-10 Score=109.72 Aligned_cols=140 Identities=21% Similarity=0.225 Sum_probs=87.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc-ccc--ccCcccccCC-cCceeeCCCCCCCCC-CCCCCCh
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV-WSQ--TIESTKLQTP-KSFYQFSDFAWPNSV-TETFPDH 103 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~-w~~--~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 103 (523)
+++||+||||||+|++||.+|++.|++|+|+|+...+||. |.. .++...+..+ ...+.-.+.++.... .....++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 5689999999999999999999999999999999888763 432 1222111110 000111112222110 1122456
Q ss_pred hHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCC-CeEEEEeec----ccCCcceeEE
Q 009897 104 NKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSG-KWNVTVQEA----RNVSSATEAY 178 (523)
Q Consensus 104 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~----~~~~~~~~~~ 178 (523)
.++...|.+.+.+.+. .++++++|+++...+ ++ ..-|.++.. .+...+..++
T Consensus 104 ~~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~---------------------~g~V~Gvv~~~~~v~~~g~~~~~~~i 160 (257)
T PRK04176 104 VEAAAKLAAAAIDAGA--KIFNGVSVEDVILRE---------------------DPRVAGVVINWTPVEMAGLHVDPLTI 160 (257)
T ss_pred HHHHHHHHHHHHHcCC--EEEcCceeceeeEeC---------------------CCcEEEEEEccccccccCCCCCcEEE
Confidence 7888888888888888 899999999987643 11 122222110 0001123479
Q ss_pred EeCEEEEeeeecC
Q 009897 179 QVDFVILCIGRYS 191 (523)
Q Consensus 179 ~~d~vVlAtG~~s 191 (523)
.++.||+|||+.+
T Consensus 161 ~Ak~VI~ATG~~a 173 (257)
T PRK04176 161 EAKAVVDATGHDA 173 (257)
T ss_pred EcCEEEEEeCCCc
Confidence 9999999999875
No 98
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.13 E-value=4.4e-10 Score=111.07 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=86.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--c---------cCcccc-cCCcCceeeC------CCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--T---------IESTKL-QTPKSFYQFS------DFAW 92 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~---------~~~~~~-~~~~~~~~~~------~~~~ 92 (523)
+||+|||||++|+++|..|++.|++|+|+|+....+..+.. . .+.... ........+. ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 58999999999999999999999999999999876553331 0 000000 0000000000 1111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCC
Q 009897 93 PNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVS 172 (523)
Q Consensus 93 ~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (523)
+.. .....++.++.+.|.+.+++.+. .+.++++|+++.... +.+.+.+.++.
T Consensus 81 ~~~-~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~~----------------------~~~~~~~~~~~--- 132 (295)
T TIGR02032 81 ETE-LAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIHD----------------------DRVVVIVRGGE--- 132 (295)
T ss_pred CCC-cEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEeC----------------------CEEEEEEcCcc---
Confidence 110 11234678888999999998888 899999999998764 34555544321
Q ss_pred cceeEEEeCEEEEeeeecC
Q 009897 173 SATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 173 ~~~~~~~~d~vVlAtG~~s 191 (523)
.++++|+||+|+|.++
T Consensus 133 ---~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 133 ---GTVTAKIVIGADGSRS 148 (295)
T ss_pred ---EEEEeCEEEECCCcch
Confidence 2789999999999874
No 99
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.12 E-value=2.3e-11 Score=113.27 Aligned_cols=153 Identities=27% Similarity=0.353 Sum_probs=85.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH--H-
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM--E- 108 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 108 (523)
||+|||||++|++||.+|++.+.+++|+|+.+..+..... .+..... .......... +
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~-~~~~~~~------------------~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC-IPSPLLV------------------EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH-HHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc-ccccccc------------------cccccccccccccc
Confidence 6999999999999999999999999999886543221000 0000000 0000001111 1
Q ss_pred -HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 109 -YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 109 -yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
.+.+..++.++ .+.++++|.+++.... . + ....+.+..... +...++.||+||+||
T Consensus 62 ~~~~~~~~~~~v--~~~~~~~v~~i~~~~~--~--------------~-~~~~~~~~~~~~----~~~~~~~~d~lviAt 118 (201)
T PF07992_consen 62 FKLVDQLKNRGV--EIRLNAKVVSIDPESK--R--------------V-VCPAVTIQVVET----GDGREIKYDYLVIAT 118 (201)
T ss_dssp GHHHHHHHHHTH--EEEHHHTEEEEEESTT--E--------------E-EETCEEEEEEET----TTEEEEEEEEEEEES
T ss_pred cccccccccceE--EEeecccccccccccc--c--------------c-ccCcccceeecc----CCceEecCCeeeecC
Confidence 22222344565 6778899999988650 0 0 001123322111 123489999999999
Q ss_pred eecCCCCCCCCCCCCCCCCC--CCccEEecCCCCchhhhcCCCEEEEEc
Q 009897 188 GRYSDLPNTPDFPMNKGPEV--FDGKVLHSMNDDLAAELINGKRVTVIG 234 (523)
Q Consensus 188 G~~s~~p~~p~~p~~~g~~~--~~g~~~h~~~~~~~~~~~~~k~V~VvG 234 (523)
|.. |+.|.+| |.+. +...+.++..+... ....++|+|||
T Consensus 119 G~~---~~~~~i~---g~~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG 159 (201)
T PF07992_consen 119 GSR---PRTPNIP---GEEVAYFLRGVDDAQRFLEL--LESPKRVAVVG 159 (201)
T ss_dssp TEE---EEEESST---TTTTECBTTSEEHHHHHHTH--SSTTSEEEEES
T ss_pred ccc---cceeecC---CCcccccccccccccccccc--ccccccccccc
Confidence 954 7777788 6531 11223333333221 12355999999
No 100
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.11 E-value=7.8e-10 Score=114.22 Aligned_cols=133 Identities=14% Similarity=0.190 Sum_probs=86.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC----c-------cccc---------ccCcccc--cCCcCce
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG----G-------VWSQ---------TIESTKL--QTPKSFY 85 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G----G-------~w~~---------~~~~~~~--~~~~~~~ 85 (523)
++.+||+||||||+|+++|..|.++|++|+|+|+.+... + .+.. .++.+.- ..+...+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 455899999999999999999999999999999976431 1 0000 0111100 0011111
Q ss_pred -----------eeCCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCC
Q 009897 86 -----------QFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKP 154 (523)
Q Consensus 86 -----------~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (523)
.|...............+..+.+.|.+.+++.++ .+.++++|++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~------------------ 143 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQDA------------------ 143 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecC------------------
Confidence 1110000000001123456777888888888787 789999999998754
Q ss_pred CCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 155 FSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 155 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.++. ++.+|.||.|+|..|
T Consensus 144 ----~~v~v~~~~g~-------~~~a~~vV~AdG~~S 169 (392)
T PRK08773 144 ----DRVRLRLDDGR-------RLEAALAIAADGAAS 169 (392)
T ss_pred ----CeEEEEECCCC-------EEEeCEEEEecCCCc
Confidence 45778776654 789999999999875
No 101
>PRK06847 hypothetical protein; Provisional
Probab=99.10 E-value=1.2e-09 Score=112.12 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=86.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc----ccc-----------ccCccc-ccCCcCceee------
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV----WSQ-----------TIESTK-LQTPKSFYQF------ 87 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~----w~~-----------~~~~~~-~~~~~~~~~~------ 87 (523)
.+||+|||||++|+++|..|.+.|++|+|+|+++.+... ... .++.+. ...+...+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 368999999999999999999999999999998653211 000 000000 0001110110
Q ss_pred --CCCCCCC----C-CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCC
Q 009897 88 --SDFAWPN----S-VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGK 160 (523)
Q Consensus 88 --~~~~~~~----~-~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
..++.+. . .......+.++.++|.+.+.+.++ .++++++|++++... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~ 139 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQDD----------------------DG 139 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEcC----------------------CE
Confidence 0111110 0 011234678889999999988887 899999999998754 45
Q ss_pred eEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 161 WNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.|++.++. ++.+|.||+|+|.+|
T Consensus 140 ~~v~~~~g~-------~~~ad~vI~AdG~~s 163 (375)
T PRK06847 140 VTVTFSDGT-------TGRYDLVVGADGLYS 163 (375)
T ss_pred EEEEEcCCC-------EEEcCEEEECcCCCc
Confidence 778776664 789999999999885
No 102
>PRK06834 hypothetical protein; Provisional
Probab=99.08 E-value=1.3e-09 Score=115.23 Aligned_cols=132 Identities=20% Similarity=0.282 Sum_probs=86.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC---C----cccccc---------cCccccc-CCc--Cce---
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI---G----GVWSQT---------IESTKLQ-TPK--SFY--- 85 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---G----G~w~~~---------~~~~~~~-~~~--~~~--- 85 (523)
|..+||+||||||+|+++|..|.+.|++|+|+|+.+.. + +.+... ++.+.-. .+. ..+
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 34589999999999999999999999999999987642 1 122110 1111000 000 001
Q ss_pred --eeCCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEE
Q 009897 86 --QFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNV 163 (523)
Q Consensus 86 --~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 163 (523)
.+.+++.... .........+.+.|.+.++++++ .++++++|++++.+. +.+.|
T Consensus 81 ~~~~~~~~~~~~-~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~~----------------------~~v~v 135 (488)
T PRK06834 81 RLDISDFPTRHN-YGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQDD----------------------TGVDV 135 (488)
T ss_pred ecccccCCCCCC-ccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcC----------------------CeEEE
Confidence 1111111000 11223456778888888888887 899999999998864 45777
Q ss_pred EEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 164 TVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 164 ~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
++.++. ++.+|+||.|.|.+|
T Consensus 136 ~~~~g~-------~i~a~~vVgADG~~S 156 (488)
T PRK06834 136 ELSDGR-------TLRAQYLVGCDGGRS 156 (488)
T ss_pred EECCCC-------EEEeCEEEEecCCCC
Confidence 765543 799999999999986
No 103
>PRK08013 oxidoreductase; Provisional
Probab=99.07 E-value=1.2e-09 Score=113.18 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=84.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC---cc---------ccc---------ccCcccc--cCCcCce
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG---GV---------WSQ---------TIESTKL--QTPKSFY 85 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~---------w~~---------~~~~~~~--~~~~~~~ 85 (523)
..+||+||||||+|+++|..|++.|++|+|+|+.+.+. |. +.. .++.+.- ..+...+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~ 81 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence 35899999999999999999999999999999987532 10 000 0111100 0111111
Q ss_pred eeCC------CCCCCC-C-CC---CCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCC
Q 009897 86 QFSD------FAWPNS-V-TE---TFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGK 153 (523)
Q Consensus 86 ~~~~------~~~~~~-~-~~---~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 153 (523)
.+.+ ..+... . .. ....+..+.+.|.+.+... ++ .++++++|++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~----------------- 142 (400)
T PRK08013 82 EVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAWGE----------------- 142 (400)
T ss_pred EEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecC-----------------
Confidence 1110 001100 0 01 1235667778887777765 56 788999999998754
Q ss_pred CCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 154 PFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+...|++.++. ++++|.||.|.|.+|
T Consensus 143 -----~~v~v~~~~g~-------~i~a~lvVgADG~~S 168 (400)
T PRK08013 143 -----NEAFLTLKDGS-------MLTARLVVGADGANS 168 (400)
T ss_pred -----CeEEEEEcCCC-------EEEeeEEEEeCCCCc
Confidence 34677776654 899999999999986
No 104
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.07 E-value=1.6e-09 Score=111.79 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=85.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc-----ccCccc-----ccCCcCceeeCC--CCCCCCCCCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ-----TIESTK-----LQTPKSFYQFSD--FAWPNSVTET 99 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~-----~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~ 99 (523)
||+|||||++|+++|..|.+.|++|+|+|+.+.+|+.+.. ..+.+. .+.-...+.+.+ ..........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999998888764322 111111 011111111111 1100000111
Q ss_pred CCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEE
Q 009897 100 FPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQ 179 (523)
Q Consensus 100 ~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 179 (523)
...+..+.+++.+.+.+.++ .+ +..+|..+.... .+.|.|++.++. ++.
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~~~---------------------~~~~~v~~~~g~-------~~~ 129 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEADG---------------------VALSTVYCAGGQ-------RIQ 129 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEecC---------------------CceeEEEeCCCC-------EEE
Confidence 24678888999988888776 45 466888887652 256888877664 799
Q ss_pred eCEEEEeeeecC
Q 009897 180 VDFVILCIGRYS 191 (523)
Q Consensus 180 ~d~vVlAtG~~s 191 (523)
+|.||.|+|..|
T Consensus 130 a~~VI~A~G~~s 141 (388)
T TIGR01790 130 ARLVIDARGFGP 141 (388)
T ss_pred eCEEEECCCCch
Confidence 999999999873
No 105
>PRK09126 hypothetical protein; Provisional
Probab=99.06 E-value=1.5e-09 Score=112.07 Aligned_cols=133 Identities=15% Similarity=0.178 Sum_probs=81.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC--------Ccc---ccc---------ccCcccc--cCCcCce
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI--------GGV---WSQ---------TIESTKL--QTPKSFY 85 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~--------GG~---w~~---------~~~~~~~--~~~~~~~ 85 (523)
||.+||+||||||+|+++|..|++.|++|+|+|+.+.. |.. +.. .++.+.. ..+...+
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA 80 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence 57899999999999999999999999999999998652 211 111 0000000 0011011
Q ss_pred eeCC------CCCCC-----CCCCCCCChhHHHHHHHHHHH-HhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCC
Q 009897 86 QFSD------FAWPN-----SVTETFPDHNKVMEYLQAYAA-HFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGK 153 (523)
Q Consensus 86 ~~~~------~~~~~-----~~~~~~~~~~~~~~yl~~~~~-~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 153 (523)
.+.+ ..++. .......++..+.+.+.+.+. ..++ .++++++|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~~----------------- 141 (392)
T PRK09126 81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTDD----------------- 141 (392)
T ss_pred EEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEcC-----------------
Confidence 1100 00100 000011234455555554443 3466 799999999998754
Q ss_pred CCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 154 PFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|+++++. ++.+|.||.|+|.+|
T Consensus 142 -----~~~~v~~~~g~-------~~~a~~vI~AdG~~S 167 (392)
T PRK09126 142 -----DGAQVTLANGR-------RLTARLLVAADSRFS 167 (392)
T ss_pred -----CeEEEEEcCCC-------EEEeCEEEEeCCCCc
Confidence 45778776654 899999999999875
No 106
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.06 E-value=1.5e-09 Score=112.04 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=83.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc--ccccc------------cCcccc-cCCcCceeeCC-----
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG--VWSQT------------IESTKL-QTPKSFYQFSD----- 89 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG--~w~~~------------~~~~~~-~~~~~~~~~~~----- 89 (523)
.+||+|||||++|+++|..|++.|++|+|+|+.+..+. .+... ++.+.- ..+...+.+.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 47999999999999999999999999999999865421 11100 000000 00111111110
Q ss_pred ----------CCCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCC
Q 009897 90 ----------FAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSG 159 (523)
Q Consensus 90 ----------~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
............++..+.+.|.+.+.+++. ..+++++|++++... +
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~--~~~~~~~v~~i~~~~----------------------~ 142 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPN--ITRFGDEAESVRPRE----------------------D 142 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCC--cEEECCeeEEEEEcC----------------------C
Confidence 000000001123566777888777777653 347899999998754 4
Q ss_pred CeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 160 KWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 160 ~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.|.|+++++. ++.+|.||.|+|..|
T Consensus 143 ~~~v~~~~g~-------~~~a~~vI~AdG~~S 167 (388)
T PRK07494 143 EVTVTLADGT-------TLSARLVVGADGRNS 167 (388)
T ss_pred eEEEEECCCC-------EEEEeEEEEecCCCc
Confidence 5888876654 799999999999885
No 107
>PLN02463 lycopene beta cyclase
Probab=99.06 E-value=1e-09 Score=114.14 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=85.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC-----CcccccccCccc------ccCCcCceeeCC-CCCCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI-----GGVWSQTIESTK------LQTPKSFYQFSD-FAWPNSVT 97 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~ 97 (523)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. .|.|......+. ...+.....+.+ ........
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~ 107 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP 107 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence 379999999999999999999999999999987542 244432111010 011111111111 00000001
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeE
Q 009897 98 ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEA 177 (523)
Q Consensus 98 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (523)
.....+.++.+++.+.+...++ .+. .++|++|+..+ +.+.|+++++. +
T Consensus 108 y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~~----------------------~~~~V~~~dG~-------~ 155 (447)
T PLN02463 108 YGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHEE----------------------SKSLVVCDDGV-------K 155 (447)
T ss_pred ceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEcC----------------------CeEEEEECCCC-------E
Confidence 1224678888999888888776 553 57899988754 45788887765 8
Q ss_pred EEeCEEEEeeeecC
Q 009897 178 YQVDFVILCIGRYS 191 (523)
Q Consensus 178 ~~~d~vVlAtG~~s 191 (523)
+.+|.||.|+|..|
T Consensus 156 i~A~lVI~AdG~~s 169 (447)
T PLN02463 156 IQASLVLDATGFSR 169 (447)
T ss_pred EEcCEEEECcCCCc
Confidence 99999999999874
No 108
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.06 E-value=2.3e-09 Score=111.74 Aligned_cols=131 Identities=19% Similarity=0.169 Sum_probs=84.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc------cc-c----ccCcccccCCc------CceeeC----
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV------WS-Q----TIESTKLQTPK------SFYQFS---- 88 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~------w~-~----~~~~~~~~~~~------~~~~~~---- 88 (523)
.+||+||||||+|++||..|++.|++|+|+|+.+.+|.. .. . .+|.+....|. ..+.+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 489999999999999999999999999999998766532 11 1 12211111110 011110
Q ss_pred --CCCCCC-----CC-CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCC
Q 009897 89 --DFAWPN-----SV-TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGK 160 (523)
Q Consensus 89 --~~~~~~-----~~-~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
.+.+.. .. ......+.++.++|.+.+++.|. .+..+++|+++.... +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------g~ 140 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQRD----------------------GK 140 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEeC----------------------CE
Confidence 001110 00 11223577888999999998888 899999999987643 33
Q ss_pred eEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 161 WNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+...++. ++.+|.||+|+|..|
T Consensus 141 v~~v~~~g~-------~i~A~~VI~A~G~~s 164 (428)
T PRK10157 141 VVGVEADGD-------VIEAKTVILADGVNS 164 (428)
T ss_pred EEEEEcCCc-------EEECCEEEEEeCCCH
Confidence 433333333 789999999999764
No 109
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.06 E-value=1e-09 Score=113.28 Aligned_cols=134 Identities=22% Similarity=0.168 Sum_probs=90.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc-----------ccCccc----ccCCcCceeeCCCC-
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ-----------TIESTK----LQTPKSFYQFSDFA- 91 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~-----------~~~~~~----~~~~~~~~~~~~~~- 91 (523)
+|++||+||||||||++||+.|++.|++|+|+|+.+.+|..-.. ..+... ..+......+..-.
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 47799999999999999999999999999999998888752221 111111 00111111111000
Q ss_pred -CCCC-CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecc
Q 009897 92 -WPNS-VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEAR 169 (523)
Q Consensus 92 -~~~~-~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 169 (523)
+... .......+..+.++|...+++.|. .+..+++|..+...+ +...+.+..+.
T Consensus 81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 136 (396)
T COG0644 81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIRED----------------------DGVVVGVRAGD 136 (396)
T ss_pred EEecCCCceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEeC----------------------CcEEEEEEcCC
Confidence 0000 012233578888999999999998 899999999999875 34555544442
Q ss_pred cCCcceeEEEeCEEEEeeeecC
Q 009897 170 NVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 170 ~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.++.+++||.|+|..+
T Consensus 137 ------~e~~a~~vI~AdG~~s 152 (396)
T COG0644 137 ------DEVRAKVVIDADGVNS 152 (396)
T ss_pred ------EEEEcCEEEECCCcch
Confidence 2899999999999774
No 110
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.05 E-value=8.4e-10 Score=102.35 Aligned_cols=122 Identities=26% Similarity=0.467 Sum_probs=82.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc-ccCcccccC----------------------------Cc
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ-TIESTKLQT----------------------------PK 82 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~----------------------------~~ 82 (523)
+|+|||+|++|++||..|++.|.+|+||||+..+||.... +.++.+.+. ..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 6999999999999999999999999999999999997765 222222211 12
Q ss_pred CceeeCCCCCCC---CC-CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCC
Q 009897 83 SFYQFSDFAWPN---SV-TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSS 158 (523)
Q Consensus 83 ~~~~~~~~~~~~---~~-~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
..+.|.+-..+. .. ....|.-..+.+||. . ++ .|+++++|+.+.+.+
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA---t--dL--~V~~~~rVt~v~~~~---------------------- 133 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA---T--DL--TVVLETRVTEVARTD---------------------- 133 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHh---c--cc--hhhhhhhhhhheecC----------------------
Confidence 233333221111 00 111223333333332 2 45 789999999999865
Q ss_pred CCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 159 GKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
+.|+++++++. ....||.||||.=
T Consensus 134 ~~W~l~~~~g~------~~~~~d~vvla~P 157 (331)
T COG3380 134 NDWTLHTDDGT------RHTQFDDVVLAIP 157 (331)
T ss_pred CeeEEEecCCC------cccccceEEEecC
Confidence 67999997764 1678999999875
No 111
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.04 E-value=1.7e-09 Score=112.55 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=82.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC-----Ccccc---c---------ccCcccc-cCCcCc------
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI-----GGVWS---Q---------TIESTKL-QTPKSF------ 84 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~---~---------~~~~~~~-~~~~~~------ 84 (523)
..+||+||||||+|+++|..|++.|++|+|+|+++.. |.... . ..+.+.- ..+...
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 3589999999999999999999999999999998754 21111 0 0010000 001111
Q ss_pred -----eeeCCCCCCCCCCCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCC
Q 009897 85 -----YQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSS 158 (523)
Q Consensus 85 -----~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
..+...............+..+.+.|.+.+.+. ++ .++++++|++++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~~~---------------------- 152 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEYQQ---------------------- 152 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecC----------------------
Confidence 111110010000001122345667776666665 45 788899999998754
Q ss_pred CCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 159 GKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.++. +..++++|.||.|.|.+|
T Consensus 153 ~~~~v~~~~~~----~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 153 DAATVTLEIEG----KQQTLQSKLVVAADGARS 181 (415)
T ss_pred CeeEEEEccCC----cceEEeeeEEEEeCCCCc
Confidence 45777776432 123699999999999886
No 112
>PRK08244 hypothetical protein; Provisional
Probab=99.03 E-value=2.6e-09 Score=113.67 Aligned_cols=135 Identities=18% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc------cccc---------ccCcccc-cCCcCceeeCC---
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG------VWSQ---------TIESTKL-QTPKSFYQFSD--- 89 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG------~w~~---------~~~~~~~-~~~~~~~~~~~--- 89 (523)
|++||+||||||+||++|..|.+.|++|+|+|+.+...- .+.. ..+.+.- ..+...+.+..
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 458999999999999999999999999999999765311 0000 0000000 00111111111
Q ss_pred -CCCCC---CC-CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEE
Q 009897 90 -FAWPN---SV-TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVT 164 (523)
Q Consensus 90 -~~~~~---~~-~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 164 (523)
..+.. .. .....++..+.+.|.+.+++.++ .++++++|++++... +...|+
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~v~v~ 136 (493)
T PRK08244 81 RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQDG----------------------DGVEVV 136 (493)
T ss_pred cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEcC----------------------CeEEEE
Confidence 11110 00 01123566788888888888887 799999999998754 346666
Q ss_pred EeecccCCcceeEEEeCEEEEeeeecC
Q 009897 165 VQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 165 ~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+++.. + .+++++|+||.|.|..|
T Consensus 137 ~~~~~---g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 137 VRGPD---G-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred EEeCC---c-cEEEEeCEEEECCCCCh
Confidence 65422 1 23789999999999885
No 113
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.02 E-value=3.4e-09 Score=109.25 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=84.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccC-CC---CCccccc-c--------------cCcccccCCcCceeeCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEAR-SG---IGGVWSQ-T--------------IESTKLQTPKSFYQFSDFA 91 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~---~GG~w~~-~--------------~~~~~~~~~~~~~~~~~~~ 91 (523)
+||+||||||+|+++|..|++.|++|+|+|+. .. .||.... . +.+..+..|........++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 68999999999999999999999999999997 22 1222111 0 1111111111100000111
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeeccc-
Q 009897 92 WPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARN- 170 (523)
Q Consensus 92 ~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 170 (523)
.... ......+..+.++|.+.+.+.+. .+.. ++|+++...+ +.+.|++.++..
T Consensus 81 ~~~~-~~~~~~r~~fd~~L~~~a~~~G~--~v~~-~~v~~v~~~~----------------------~~~~v~~~~~~~~ 134 (388)
T TIGR02023 81 SEDG-YVGMVRREVFDSYLRERAQKAGA--ELIH-GLFLKLERDR----------------------DGVTLTYRTPKKG 134 (388)
T ss_pred CCCC-ceEeeeHHHHHHHHHHHHHhCCC--EEEe-eEEEEEEEcC----------------------CeEEEEEEecccc
Confidence 1100 01126788999999999988887 6654 4688887654 457787764210
Q ss_pred CCcceeEEEeCEEEEeeeecC
Q 009897 171 VSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 171 ~~~~~~~~~~d~vVlAtG~~s 191 (523)
..++..++.+|.||.|+|..|
T Consensus 135 ~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 135 AGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCcceEEEeCEEEECCCCCc
Confidence 011234799999999999875
No 114
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.02 E-value=2.2e-09 Score=111.45 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=83.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC-------------Ccccc-c---------ccCcccc--cCCcC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI-------------GGVWS-Q---------TIESTKL--QTPKS 83 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-------------GG~w~-~---------~~~~~~~--~~~~~ 83 (523)
|.+||+|||||++|+++|..|.+.|++|+|||+.+.. +.... . .++.+.- ..+..
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 4579999999999999999999999999999997621 11100 0 0111110 01111
Q ss_pred ceeeCC------CCCCC-----CCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCC
Q 009897 84 FYQFSD------FAWPN-----SVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTG 152 (523)
Q Consensus 84 ~~~~~~------~~~~~-----~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 152 (523)
.+.+.+ ..+.. ........+..+.+.|.+.+++.++ .++++++|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~---------------- 142 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRSG---------------- 142 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEcC----------------
Confidence 111110 00000 0001122345666666666666666 788999999998764
Q ss_pred CCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 153 KPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.++. ++.+|.||.|.|..|
T Consensus 143 ------~~v~v~~~~g~-------~~~a~~vVgAdG~~S 168 (405)
T PRK05714 143 ------DDWLLTLADGR-------QLRAPLVVAADGANS 168 (405)
T ss_pred ------CeEEEEECCCC-------EEEeCEEEEecCCCc
Confidence 45888877664 799999999999885
No 115
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.00 E-value=1.1e-09 Score=111.01 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=84.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc----ccc--c---cC--ccc-----ccCCcCc----------
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV----WSQ--T---IE--STK-----LQTPKSF---------- 84 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~----w~~--~---~~--~~~-----~~~~~~~---------- 84 (523)
+||+||||||+|+++|..|+++|++|+|||+++..... ... . .. ++. ...+...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 68999999999999999999999999999998764211 100 0 00 000 0000000
Q ss_pred ---------eeeCCCCCCCC-CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCC
Q 009897 85 ---------YQFSDFAWPNS-VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKP 154 (523)
Q Consensus 85 ---------~~~~~~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (523)
....++..... .......+..+.+.|.+.+++.++ .++++++|+++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d~------------------ 141 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQDD------------------ 141 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEET------------------
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccccc------------------
Confidence 00001100000 011223577899999999999997 899999999998765
Q ss_pred CCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 155 FSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 155 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+...+.+.... +++.+++++|.||.|.|.+|
T Consensus 142 ----~~~~~~~~~~~--~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 142 ----DGVTVVVRDGE--DGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp ----TEEEEEEEETC--TCEEEEEEESEEEE-SGTT-
T ss_pred ----ccccccccccc--CCceeEEEEeeeecccCccc
Confidence 34566665553 34445899999999999986
No 116
>PRK06753 hypothetical protein; Provisional
Probab=99.00 E-value=2.9e-09 Score=109.19 Aligned_cols=128 Identities=23% Similarity=0.271 Sum_probs=81.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc---c---cc-----ccCcc----c-ccCCcCceee-------
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV---W---SQ-----TIEST----K-LQTPKSFYQF------- 87 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w---~~-----~~~~~----~-~~~~~~~~~~------- 87 (523)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+.-. . .. ...++ . .-.+...+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 37999999999999999999999999999998764311 0 00 00000 0 0001111111
Q ss_pred -CCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEe
Q 009897 88 -SDFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQ 166 (523)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 166 (523)
...++.........++..+.+.|.+.+.. . .++++++|++++..+ +.+.|++.
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~----------------------~~v~v~~~ 134 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENET----------------------DKVTIHFA 134 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecC----------------------CcEEEEEC
Confidence 11111111011234667777777665542 2 689999999998654 56888877
Q ss_pred ecccCCcceeEEEeCEEEEeeeecC
Q 009897 167 EARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 167 ~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
++. ++.+|.||.|.|.+|
T Consensus 135 ~g~-------~~~~~~vigadG~~S 152 (373)
T PRK06753 135 DGE-------SEAFDLCIGADGIHS 152 (373)
T ss_pred CCC-------EEecCEEEECCCcch
Confidence 665 789999999999885
No 117
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.98 E-value=2.6e-09 Score=110.52 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=84.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc------ccc---------ccCccc-ccCCcCceeeCC---
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV------WSQ---------TIESTK-LQTPKSFYQFSD--- 89 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~------w~~---------~~~~~~-~~~~~~~~~~~~--- 89 (523)
+..+|+|||||++|+++|..|++.|++|+|+|+.+.++.. +.. ..+.+. ...+...+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 3479999999999999999999999999999998765421 111 011100 000111111110
Q ss_pred ------CCCCC----CC--CCCCCChhHHHHHHHHHHHHhC-CCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCC
Q 009897 90 ------FAWPN----SV--TETFPDHNKVMEYLQAYAAHFN-LFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFS 156 (523)
Q Consensus 90 ------~~~~~----~~--~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (523)
.+... .. ......+.++.+.|.+.+.+.+ + .++++++|++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~-------------------- 140 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQDG-------------------- 140 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEecCC--------------------
Confidence 11110 00 0012356777788877776654 5 688899999998653
Q ss_pred CCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 157 SSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 157 ~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.++. ++.+|.||.|.|..|
T Consensus 141 --~~v~v~~~~g~-------~~~ad~vV~AdG~~S 166 (396)
T PRK08163 141 --DGVTVFDQQGN-------RWTGDALIGCDGVKS 166 (396)
T ss_pred --CceEEEEcCCC-------EEecCEEEECCCcCh
Confidence 45777776654 799999999999885
No 118
>PRK06184 hypothetical protein; Provisional
Probab=98.98 E-value=5.4e-09 Score=111.51 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=84.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc------cccc-------------------ccCcccccCCcC-
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG------VWSQ-------------------TIESTKLQTPKS- 83 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG------~w~~-------------------~~~~~~~~~~~~- 83 (523)
.+||+||||||+||++|..|++.|++|+|+|+.+.+.. .+.. .++......+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999865521 1110 001111000000
Q ss_pred ceeeCCCCC----CCC-C-CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCC
Q 009897 84 FYQFSDFAW----PNS-V-TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSS 157 (523)
Q Consensus 84 ~~~~~~~~~----~~~-~-~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (523)
......... +.. . .....++..+.+.|.+.+.+.++ .++++++|++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~--------------------- 139 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDA--------------------- 139 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcC---------------------
Confidence 000000000 000 0 01123456677788888888787 899999999998764
Q ss_pred CCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 158 SGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 158 ~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+++++.... ..+++++|+||.|+|..|
T Consensus 140 -~~v~v~~~~~~----~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 140 -DGVTARVAGPA----GEETVRARYLVGADGGRS 168 (502)
T ss_pred -CcEEEEEEeCC----CeEEEEeCEEEECCCCch
Confidence 34666664321 113799999999999986
No 119
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.98 E-value=7.7e-09 Score=111.19 Aligned_cols=136 Identities=18% Similarity=0.253 Sum_probs=88.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc---------------c----------cCcccccCCc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ---------------T----------IESTKLQTPK 82 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~---------------~----------~~~~~~~~~~ 82 (523)
++.+||+||||||+|+++|..|.+.|++|+|+|+.+.+...... . ..+.......
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 45689999999999999999999999999999998765422110 0 0111110000
Q ss_pred --CceeeCCCCCCC--CC-CCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCC
Q 009897 83 --SFYQFSDFAWPN--SV-TETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFS 156 (523)
Q Consensus 83 --~~~~~~~~~~~~--~~-~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (523)
....+.. +... .+ ......+..+.++|.+.+.++ ++ .++++++|++++.++
T Consensus 88 g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~-------------------- 144 (538)
T PRK06183 88 GRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDD-------------------- 144 (538)
T ss_pred CCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcC--------------------
Confidence 1111110 1000 00 112234567778888877775 66 899999999998764
Q ss_pred CCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 157 SSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 157 ~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
++++|++++.+ ++.+++++|+||.|.|.+|
T Consensus 145 --~~v~v~~~~~~---G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 145 --DGVTVTLTDAD---GQRETVRARYVVGCDGANS 174 (538)
T ss_pred --CeEEEEEEcCC---CCEEEEEEEEEEecCCCch
Confidence 45777776421 2234799999999999986
No 120
>PRK10015 oxidoreductase; Provisional
Probab=98.97 E-value=8.1e-09 Score=107.55 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=83.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc------ccc-c----ccCcccccC------CcCceeeCC---
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG------VWS-Q----TIESTKLQT------PKSFYQFSD--- 89 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG------~w~-~----~~~~~~~~~------~~~~~~~~~--- 89 (523)
.+||+||||||+|++||..|++.|++|+|+|+.+.+|. ... . ..|++.... ....+.+..
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 48999999999999999999999999999999876542 211 1 122221111 111111110
Q ss_pred ---CCCCCC-----CC-CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCC
Q 009897 90 ---FAWPNS-----VT-ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGK 160 (523)
Q Consensus 90 ---~~~~~~-----~~-~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
..+... .. .....+..+.++|.+.+++.+. .+..+++|+++.... ++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------~~ 140 (429)
T PRK10015 85 AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVREG----------------------NK 140 (429)
T ss_pred ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEEeC----------------------CE
Confidence 011100 00 1123567788889998998888 789999999987643 33
Q ss_pred eEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 161 WNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+...++. ++.+|.||+|+|..|
T Consensus 141 v~~v~~~~~-------~i~A~~VI~AdG~~s 164 (429)
T PRK10015 141 VTGVQAGDD-------ILEANVVILADGVNS 164 (429)
T ss_pred EEEEEeCCe-------EEECCEEEEccCcch
Confidence 432222222 799999999999764
No 121
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.97 E-value=5.9e-09 Score=107.52 Aligned_cols=131 Identities=13% Similarity=0.186 Sum_probs=83.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC---cccccc-----------------cCcccc--cCCcCcee
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG---GVWSQT-----------------IESTKL--QTPKSFYQ 86 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~-----------------~~~~~~--~~~~~~~~ 86 (523)
|.+||+||||||+|+++|..|.+.|++|+|+|+.+... ..|... .+.+.. ..+...+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 56899999999999999999999999999999987642 222210 000000 00111111
Q ss_pred eCC-----CCCC---CCCC--CCCCChhHHHHHHHHHHHHhC-CCCceEeccEEEEEEeCCCCCcccccccccCCCCCCC
Q 009897 87 FSD-----FAWP---NSVT--ETFPDHNKVMEYLQAYAAHFN-LFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPF 155 (523)
Q Consensus 87 ~~~-----~~~~---~~~~--~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
+.+ ..+. .... .....+..+.+.|.+.+++.+ + .+. +++|+++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~~~------------------- 141 (388)
T PRK07608 84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEVDP------------------- 141 (388)
T ss_pred EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEecC-------------------
Confidence 110 0000 0000 011246678888888787766 5 455 88999987654
Q ss_pred CCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 156 SSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 156 ~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.++. ++.+|.||.|+|..|
T Consensus 142 ---~~~~v~~~~g~-------~~~a~~vI~adG~~S 167 (388)
T PRK07608 142 ---DAATLTLADGQ-------VLRADLVVGADGAHS 167 (388)
T ss_pred ---CeEEEEECCCC-------EEEeeEEEEeCCCCc
Confidence 45778776664 799999999999875
No 122
>PRK07236 hypothetical protein; Provisional
Probab=98.96 E-value=4.3e-09 Score=108.42 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC----Ccc---ccc---c------cCcccccCCcCceeeCC--
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI----GGV---WSQ---T------IESTKLQTPKSFYQFSD-- 89 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~---w~~---~------~~~~~~~~~~~~~~~~~-- 89 (523)
|+.++|+|||||++||++|..|.+.|++|+|+|+.+.. |+. +.. . .+......+.....+.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 56689999999999999999999999999999997632 211 110 0 01000001111111111
Q ss_pred -CCCCCC-CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEee
Q 009897 90 -FAWPNS-VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQE 167 (523)
Q Consensus 90 -~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 167 (523)
...... ..........+.+.|. +.+.- ..++++++|++++... +.++|++.+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~---~~~~~-~~i~~~~~v~~i~~~~----------------------~~v~v~~~~ 137 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALR---AAFPA-ERYHLGETLVGFEQDG----------------------DRVTARFAD 137 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHH---HhCCC-cEEEcCCEEEEEEecC----------------------CeEEEEECC
Confidence 000000 0011123344444443 33321 1589999999998754 458888877
Q ss_pred cccCCcceeEEEeCEEEEeeeecC
Q 009897 168 ARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 168 ~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
++ ++.+|.||.|.|.+|
T Consensus 138 g~-------~~~ad~vIgADG~~S 154 (386)
T PRK07236 138 GR-------RETADLLVGADGGRS 154 (386)
T ss_pred CC-------EEEeCEEEECCCCCc
Confidence 65 899999999999986
No 123
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.96 E-value=4.7e-09 Score=108.01 Aligned_cols=129 Identities=15% Similarity=0.206 Sum_probs=83.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC--------ccccc------------ccCcccc--cCCcCceee-C
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG--------GVWSQ------------TIESTKL--QTPKSFYQF-S 88 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--------G~w~~------------~~~~~~~--~~~~~~~~~-~ 88 (523)
||+|||||++|+++|..|++.|++|+|+|+.+.++ ....- ..+.+.- ..+...+.+ .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 69999999999999999999999999999987542 11110 0111100 001000000 0
Q ss_pred C-------CCCCC---CCCCCCCChhHHHHHHHHHHHHhC-CCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCC
Q 009897 89 D-------FAWPN---SVTETFPDHNKVMEYLQAYAAHFN-LFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSS 157 (523)
Q Consensus 89 ~-------~~~~~---~~~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (523)
. ++... .......++..+.+.|.+.+.+.+ . .++++++|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~~--------------------- 137 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRHS--------------------- 137 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEecC---------------------
Confidence 0 11000 000122456778888888887776 6 789999999998754
Q ss_pred CCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 158 SGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 158 ~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.++. ++.+|.||.|.|..|
T Consensus 138 -~~~~v~~~~g~-------~~~~~~vi~adG~~S 163 (385)
T TIGR01988 138 -DHVELTLDDGQ-------QLRARLLVGADGANS 163 (385)
T ss_pred -CeeEEEECCCC-------EEEeeEEEEeCCCCC
Confidence 45777776664 799999999999885
No 124
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.96 E-value=5.7e-09 Score=108.21 Aligned_cols=130 Identities=14% Similarity=0.170 Sum_probs=84.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CceEEEccCCCCCcc--------ccc---------ccCcccc-cCCcCceeeCC-
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG--FKPIVFEARSGIGGV--------WSQ---------TIESTKL-QTPKSFYQFSD- 89 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~--------w~~---------~~~~~~~-~~~~~~~~~~~- 89 (523)
+||+||||||+|+++|..|++.| ++|+|+|+.+..... +.. .++.+.- -.+...+.+.+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 68999999999999999999985 999999997642100 000 0000000 00111111100
Q ss_pred ----------CCCCC----CC-CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCC
Q 009897 90 ----------FAWPN----SV-TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKP 154 (523)
Q Consensus 90 ----------~~~~~----~~-~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (523)
..+.. .. ......+..+.+.|.+.+.+.++ .++++++|++++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~------------------ 141 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETRD------------------ 141 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcC------------------
Confidence 00000 00 01134678888999888888887 899999999998754
Q ss_pred CCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 155 FSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 155 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.++. ++.+|.||.|+|..|
T Consensus 142 ----~~v~v~~~~g~-------~~~ad~vI~AdG~~S 167 (403)
T PRK07333 142 ----EGVTVTLSDGS-------VLEARLLVAADGARS 167 (403)
T ss_pred ----CEEEEEECCCC-------EEEeCEEEEcCCCCh
Confidence 45777776654 789999999999875
No 125
>PRK07190 hypothetical protein; Provisional
Probab=98.95 E-value=8.4e-09 Score=108.99 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=84.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc--ccC---------c---------ccccC-----CcCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ--TIE---------S---------TKLQT-----PKSF 84 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~--~~~---------~---------~~~~~-----~~~~ 84 (523)
.+||+||||||+||++|..|++.|++|+|+|+.+.+...-.. ..+ + ..+.. ....
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 479999999999999999999999999999998764311000 000 0 00000 0000
Q ss_pred eeeCC--CC-CCCCCC--CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCC
Q 009897 85 YQFSD--FA-WPNSVT--ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSG 159 (523)
Q Consensus 85 ~~~~~--~~-~~~~~~--~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
..... +. .+.... ....+...+.+.|.+.+++.++ .++++++|++++.+. +
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~~~----------------------~ 140 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIELNQ----------------------A 140 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcC----------------------C
Confidence 00000 00 000000 0112456677788888888888 899999999998865 3
Q ss_pred CeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 160 KWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 160 ~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.+.+++.++. ++.+++||.|+|..|
T Consensus 141 ~v~v~~~~g~-------~v~a~~vVgADG~~S 165 (487)
T PRK07190 141 GCLTTLSNGE-------RIQSRYVIGADGSRS 165 (487)
T ss_pred eeEEEECCCc-------EEEeCEEEECCCCCH
Confidence 4666665543 799999999999886
No 126
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.94 E-value=6.4e-09 Score=107.36 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=82.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC----Cccccc-----------------ccCcccc--cCC-----
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI----GGVWSQ-----------------TIESTKL--QTP----- 81 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~-----------------~~~~~~~--~~~----- 81 (523)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. ++.+.. .++.+.- ..+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 489999999999999999999999999999987521 111000 0010000 001
Q ss_pred -----cCceeeCCCCCCCCCCCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCC
Q 009897 82 -----KSFYQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPF 155 (523)
Q Consensus 82 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
.....+...............+..+.+.|.+.++.. ++ .+.++++|+++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~------------------- 143 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQRDD------------------- 143 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEEcC-------------------
Confidence 001111100000000011235667777787777666 66 688899999998654
Q ss_pred CCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 156 SSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 156 ~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.++. ++.+|.||.|+|..|
T Consensus 144 ---~~~~v~~~~g~-------~~~a~~vI~AdG~~S 169 (391)
T PRK08020 144 ---DGWELTLADGE-------EIQAKLVIGADGANS 169 (391)
T ss_pred ---CeEEEEECCCC-------EEEeCEEEEeCCCCc
Confidence 45888776654 799999999999885
No 127
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.94 E-value=7.4e-09 Score=107.42 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=79.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccC-CC--CCc--------cccc---------ccCcccc--cCCcCceee
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR-SG--IGG--------VWSQ---------TIESTKL--QTPKSFYQF 87 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~--~GG--------~w~~---------~~~~~~~--~~~~~~~~~ 87 (523)
.+||+||||||+|+++|..|.+.|++|+|+|+. +. ++. .... .++.+.- ..+...+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999985 21 111 0100 0111110 011111111
Q ss_pred CC--------CCCCCCCC---CCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCC
Q 009897 88 SD--------FAWPNSVT---ETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPF 155 (523)
Q Consensus 88 ~~--------~~~~~~~~---~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
.+ ++...... ........+.+.|.+.+.+. ++ .++++++|+++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~~------------------- 142 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVGE------------------- 142 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEeeC-------------------
Confidence 10 00000000 01122445566666655554 45 688899999998754
Q ss_pred CCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 156 SSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 156 ~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|++.+++ ++++|.||.|.|..|
T Consensus 143 ---~~~~v~~~~g~-------~~~a~lvIgADG~~S 168 (405)
T PRK08850 143 ---SEAWLTLDNGQ-------ALTAKLVVGADGANS 168 (405)
T ss_pred ---CeEEEEECCCC-------EEEeCEEEEeCCCCC
Confidence 44678776665 899999999999885
No 128
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.93 E-value=8.4e-09 Score=106.21 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=79.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC-----CC--c-----cccc---------ccCcccc--cCCcCcee
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG-----IG--G-----VWSQ---------TIESTKL--QTPKSFYQ 86 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~-----~G--G-----~w~~---------~~~~~~~--~~~~~~~~ 86 (523)
.+||+||||||+|+++|..|++.|++|+|||+.+. .| | .+.. .++.+.- ..+...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 47999999999999999999999999999998641 11 1 1111 1122110 01111111
Q ss_pred e-C------CCCCCC---CCCCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCC
Q 009897 87 F-S------DFAWPN---SVTETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPF 155 (523)
Q Consensus 87 ~-~------~~~~~~---~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
. . .++..+ ........+..+...|.+.++.. ++ .++++++|++++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i--~i~~~~~v~~~~~~~------------------- 141 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNL--TLMCPEKLADLEFSA------------------- 141 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCe--EEECCCceeEEEEcC-------------------
Confidence 0 0 000000 00001122344555555544444 45 788999999998764
Q ss_pred CCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 156 SSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 156 ~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.|+++++. ++++|.||.|+|..|
T Consensus 142 ---~~~~v~~~~g~-------~~~~~lvIgADG~~S 167 (384)
T PRK08849 142 ---EGNRVTLESGA-------EIEAKWVIGADGANS 167 (384)
T ss_pred ---CeEEEEECCCC-------EEEeeEEEEecCCCc
Confidence 45778887765 899999999999986
No 129
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.93 E-value=7.9e-09 Score=106.84 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=80.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC---CCceEEEccCCCC-----C------ccccc---------ccCccccc-CCcC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLEN---GFKPIVFEARSGI-----G------GVWSQ---------TIESTKLQ-TPKS 83 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~-----G------G~w~~---------~~~~~~~~-~~~~ 83 (523)
|+.+||+||||||+|+++|..|++. |++|+|+|+.... + +.+.. .++.+.-. .+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 4558999999999999999999998 9999999994211 1 01110 01111000 0000
Q ss_pred ceeeCC------CCCC--C-CC-C-CCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCC
Q 009897 84 FYQFSD------FAWP--N-SV-T-ETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGT 151 (523)
Q Consensus 84 ~~~~~~------~~~~--~-~~-~-~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 151 (523)
.+.+.+ ..+. + .. . .....+..+.+.|.+.+... +. .++++++|+++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~~--------------- 143 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERTQ--------------- 143 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEcC---------------
Confidence 011100 0000 0 00 0 01123456666666666543 45 788899999998654
Q ss_pred CCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 152 GKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.|.|++.++. ++.+|.||.|.|..|
T Consensus 144 -------~~~~v~~~~g~-------~~~a~~vI~AdG~~S 169 (395)
T PRK05732 144 -------GSVRVTLDDGE-------TLTGRLLVAADGSHS 169 (395)
T ss_pred -------CeEEEEECCCC-------EEEeCEEEEecCCCh
Confidence 45888876654 789999999999875
No 130
>PRK07588 hypothetical protein; Provisional
Probab=98.93 E-value=5.9e-09 Score=107.62 Aligned_cols=129 Identities=21% Similarity=0.231 Sum_probs=80.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC---Ccccc---cc-------------------cCcccccCCcC--
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI---GGVWS---QT-------------------IESTKLQTPKS-- 83 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~---~~-------------------~~~~~~~~~~~-- 83 (523)
.||+|||||++|+++|..|++.|++|+|+|+.+.. |..|. .. ...+.+.....
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 47999999999999999999999999999988654 21111 10 00000000000
Q ss_pred ceeeCCCCCCCCCC--CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCe
Q 009897 84 FYQFSDFAWPNSVT--ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKW 161 (523)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
...+....+..... .....+..+.+.|.+.+.. ++ .++++++|++++... +.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~~~----------------------~~v 135 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDEHR----------------------DGV 135 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEECC----------------------CeE
Confidence 11111000110000 0123456666666554332 44 799999999998764 458
Q ss_pred EEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 162 NVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.|++++++ ++.+|.||.|.|..|
T Consensus 136 ~v~~~~g~-------~~~~d~vIgADG~~S 158 (391)
T PRK07588 136 RVTFERGT-------PRDFDLVIGADGLHS 158 (391)
T ss_pred EEEECCCC-------EEEeCEEEECCCCCc
Confidence 88887765 789999999999886
No 131
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.92 E-value=1.8e-08 Score=104.04 Aligned_cols=138 Identities=16% Similarity=0.202 Sum_probs=83.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccc-------------------cCcccccCCcCce-eeCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT-------------------IESTKLQTPKSFY-QFSDF 90 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~-------------------~~~~~~~~~~~~~-~~~~~ 90 (523)
+||+||||||+|++||..|++.|++|+|+|+....+..+... ..+.+...|.... .+. .
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~-~ 79 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIG-R 79 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEec-c
Confidence 489999999999999999999999999999976543322210 0111111111100 001 0
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeeccc
Q 009897 91 AWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARN 170 (523)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 170 (523)
.......-...++..+.++|.+.+.+.|. .++.+ ++.++.... + ..+.+.|++.....
T Consensus 80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~--~-----------------~~~~~~v~~~~~~~ 137 (398)
T TIGR02028 80 TLKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPA--D-----------------ADDPYTLHYISSDS 137 (398)
T ss_pred CCCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEecc--C-----------------CCceEEEEEeeccc
Confidence 11110001125788999999999999888 67665 476665422 0 02456676532210
Q ss_pred --CCcceeEEEeCEEEEeeeecC
Q 009897 171 --VSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 171 --~~~~~~~~~~d~vVlAtG~~s 191 (523)
..++..++.+|.||.|+|..|
T Consensus 138 ~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 138 GGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred cccCCCccEEEeCEEEECCCcch
Confidence 012234789999999999875
No 132
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.92 E-value=2.7e-08 Score=107.32 Aligned_cols=135 Identities=19% Similarity=0.294 Sum_probs=85.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccc------c---------ccCcc-----ccc------CCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWS------Q---------TIEST-----KLQ------TPK 82 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~------~---------~~~~~-----~~~------~~~ 82 (523)
+.+||+||||||+||++|..|.+.|++|+|+|+.+.+..... . ..+.+ ... ...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 568999999999999999999999999999999876532211 0 00000 000 001
Q ss_pred CceeeCCCCCCCCCCC--CCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCC
Q 009897 83 SFYQFSDFAWPNSVTE--TFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSG 159 (523)
Q Consensus 83 ~~~~~~~~~~~~~~~~--~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
....+...+....... .......+.++|.+.++++ ++ .++++++|++++... +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~~~----------------------~ 157 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQHD----------------------D 157 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEcC----------------------C
Confidence 1111111110000001 1134567778888888776 45 789999999998764 4
Q ss_pred CeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 160 KWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 160 ~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.+.+++.+.. ...++.+|+||.|+|.+|
T Consensus 158 ~v~v~~~~~~----g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 158 GVTLTVETPD----GPYTLEADWVIACDGARS 185 (547)
T ss_pred EEEEEEECCC----CcEEEEeCEEEECCCCCc
Confidence 5666665432 123689999999999886
No 133
>PRK06126 hypothetical protein; Provisional
Probab=98.92 E-value=2.3e-08 Score=107.83 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=85.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc--cc----c---c------cCcc-----cccCC------
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV--WS----Q---T------IEST-----KLQTP------ 81 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~--w~----~---~------~~~~-----~~~~~------ 81 (523)
++.++|+||||||+||++|..|+++|++|+|||+.+...-. .. . . .+.+ ....+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 35589999999999999999999999999999988643210 00 0 0 0000 00000
Q ss_pred -----cCceeeCCCCC--------------CCCCCCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcc
Q 009897 82 -----KSFYQFSDFAW--------------PNSVTETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDED 141 (523)
Q Consensus 82 -----~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~ 141 (523)
.....+..... .........++..+.+.|.+.+++. ++ .++++++|++++.+.
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~----- 157 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQDA----- 157 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEECC-----
Confidence 00001100000 0000011234566777888877765 56 899999999998764
Q ss_pred cccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 142 EHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+...+++.+.. +++.+++.+|+||.|+|.+|
T Consensus 158 -----------------~~v~v~~~~~~--~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 158 -----------------DGVTATVEDLD--GGESLTIRADYLVGCDGARS 188 (545)
T ss_pred -----------------CeEEEEEEECC--CCcEEEEEEEEEEecCCcch
Confidence 34667665532 23345789999999999986
No 134
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.92 E-value=1.2e-08 Score=104.40 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=92.9
Q ss_pred cEEEECCChHHHHHHHHH--HHCCCceEEEccCCCC--Cc--ccccccCcc------ccc-CCcCceeeCCCCCC-CCCC
Q 009897 32 KIAIIGAGVSGLLACKYT--LENGFKPIVFEARSGI--GG--VWSQTIEST------KLQ-TPKSFYQFSDFAWP-NSVT 97 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l--~~~g~~v~v~e~~~~~--GG--~w~~~~~~~------~~~-~~~~~~~~~~~~~~-~~~~ 97 (523)
||+|||||+||+++|.+| .+.|.+|+|+|+.... .. +|..-.+.. ... .+.....+.+.... ....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 6789999999988766 22 333311111 000 01111111111100 0001
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeE
Q 009897 98 ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEA 177 (523)
Q Consensus 98 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (523)
.....+..+.+++.+.+...+ .+.++++|++|+... ..+.|++.++. +
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~~~----------------------~~~~v~~~~g~-------~ 128 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEETG----------------------DGVLVVLADGR-------T 128 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEecC----------------------ceEEEEECCCC-------E
Confidence 123577888888888877433 478899999999875 35778888776 8
Q ss_pred EEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecC
Q 009897 178 YQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSM 216 (523)
Q Consensus 178 ~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~ 216 (523)
++++.||.|+|..+ + ...-. +...|.|..+...
T Consensus 129 i~a~~VvDa~g~~~--~-~~~~~---~~Q~f~G~~v~~~ 161 (374)
T PF05834_consen 129 IRARVVVDARGPSS--P-KARPL---GLQHFYGWEVETD 161 (374)
T ss_pred EEeeEEEECCCccc--c-ccccc---ccceeEEEEEecc
Confidence 99999999999542 2 11112 5566766655444
No 135
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.91 E-value=1.2e-08 Score=105.08 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=87.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC-C---CC--ccccc----ccCcccc-------cC-CcCc-------
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS-G---IG--GVWSQ----TIESTKL-------QT-PKSF------- 84 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~---~G--G~w~~----~~~~~~~-------~~-~~~~------- 84 (523)
.+||+||||||+|+++|..|++.|++|+|+|+.+ . .| ..... ....+.+ .. +...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 2 11 00000 0011111 00 1111
Q ss_pred ---eeeCCCCCCCCCCCCCCChhHHHHHHHHHHHHhC-CCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCC
Q 009897 85 ---YQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFN-LFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGK 160 (523)
Q Consensus 85 ---~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
..|..............+..++.+.|.+.+...+ + .+.++++|+.++..+ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~~----------------------~~ 137 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQDG----------------------DG 137 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEcC----------------------Cc
Confidence 1111111111101223467888888988888776 6 789999999999875 34
Q ss_pred eEEEEe-ecccCCcceeEEEeCEEEEeeeecC
Q 009897 161 WNVTVQ-EARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 161 ~~v~~~-~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
..+++. ++. ++.+|.||-|.|.+|
T Consensus 138 v~v~l~~dG~-------~~~a~llVgADG~~S 162 (387)
T COG0654 138 VTVTLSFDGE-------TLDADLLVGADGANS 162 (387)
T ss_pred eEEEEcCCCc-------EEecCEEEECCCCch
Confidence 667777 654 899999999999986
No 136
>PLN02697 lycopene epsilon cyclase
Probab=98.90 E-value=1.4e-08 Score=107.34 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=83.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC---CcccccccCcccc------cCCcCceeeCCC-CCCCCCCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI---GGVWSQTIESTKL------QTPKSFYQFSDF-AWPNSVTETF 100 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~ 100 (523)
+||+||||||+|+++|..|++.|++|+|+|+...+ .|.|......+.+ ..+.....+.+. +.........
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 89999999999999999999999999999986443 3556432111111 001111111110 0000001122
Q ss_pred CChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEE-EEeecccCCcceeEEE
Q 009897 101 PDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNV-TVQEARNVSSATEAYQ 179 (523)
Q Consensus 101 ~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~ 179 (523)
..+..+.+.|.+.+.+.++ .+ ++++|+++.... +.+.+ .+.++. ++.
T Consensus 189 V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~~----------------------~~~~vv~~~dG~-------~i~ 236 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGV--SY-LSSKVDRITEAS----------------------DGLRLVACEDGR-------VIP 236 (529)
T ss_pred EcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEcC----------------------CcEEEEEEcCCc-------EEE
Confidence 5678888899888888777 45 778999988654 33443 344443 799
Q ss_pred eCEEEEeeeecC
Q 009897 180 VDFVILCIGRYS 191 (523)
Q Consensus 180 ~d~vVlAtG~~s 191 (523)
++.||+|+|..|
T Consensus 237 A~lVI~AdG~~S 248 (529)
T PLN02697 237 CRLATVASGAAS 248 (529)
T ss_pred CCEEEECCCcCh
Confidence 999999999884
No 137
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.90 E-value=5.6e-09 Score=94.15 Aligned_cols=144 Identities=19% Similarity=0.251 Sum_probs=86.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc-cccc--ccCcccccCCcCce-eeCCCCCCCCCCC-CCCCh
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQ--TIESTKLQTPKSFY-QFSDFAWPNSVTE-TFPDH 103 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG-~w~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 103 (523)
++-||+|+||||+||+||++|++.|++|+|||++-.+|| .|.- ..+.+.++.|.... .=-..|+.+.... ...+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds 108 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS 108 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecH
Confidence 457999999999999999999999999999999988865 5654 44555444443211 1111222221111 12245
Q ss_pred hHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEE
Q 009897 104 NKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFV 183 (523)
Q Consensus 104 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~v 183 (523)
.++..-|..-+-+.+. .|...+.|+++--.+ +.. ..|.- -.|+.....+- --..-++++++|
T Consensus 109 ~e~~skl~~~a~~aGa--ki~n~~~veDvi~r~--~~r------VaGvV------vNWt~V~~~~l--hvDPl~i~a~~V 170 (262)
T COG1635 109 AEFASKLAARALDAGA--KIFNGVSVEDVIVRD--DPR------VAGVV------VNWTPVQMAGL--HVDPLTIRAKAV 170 (262)
T ss_pred HHHHHHHHHHHHhcCc--eeeecceEEEEEEec--CCc------eEEEE------Eecchhhhccc--ccCcceeeEEEE
Confidence 5666666666666676 788888898887654 000 00000 01332211110 001237899999
Q ss_pred EEeeeec
Q 009897 184 ILCIGRY 190 (523)
Q Consensus 184 VlAtG~~ 190 (523)
|-|||+-
T Consensus 171 vDaTGHd 177 (262)
T COG1635 171 VDATGHD 177 (262)
T ss_pred EeCCCCc
Confidence 9999985
No 138
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.90 E-value=1.9e-08 Score=103.94 Aligned_cols=135 Identities=21% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC------Ccc--ccc---------ccCccc-ccCCcCceeeC--
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI------GGV--WSQ---------TIESTK-LQTPKSFYQFS-- 88 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~------GG~--w~~---------~~~~~~-~~~~~~~~~~~-- 88 (523)
|.+||+||||||+|+++|..|++.|++|+|+|+.+.. ++. +.. ..+.+. ...+...+.+.
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 80 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD 80 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC
Confidence 4689999999999999999999999999999998641 111 110 000000 00011111110
Q ss_pred ----CCCCCCCC---CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCe
Q 009897 89 ----DFAWPNSV---TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKW 161 (523)
Q Consensus 89 ----~~~~~~~~---~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
.++++... .....+..++.+.|.+.+...+. .++++++|++++... ...-
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~---------------------~~~~ 137 (392)
T PRK08243 81 GRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFD---------------------SDRP 137 (392)
T ss_pred CEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecC---------------------CCce
Confidence 11111100 00111244555566555666676 799999999987622 1234
Q ss_pred EEEEe-ecccCCcceeEEEeCEEEEeeeecC
Q 009897 162 NVTVQ-EARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 162 ~v~~~-~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.|++. ++ +..++++|.||.|.|.+|
T Consensus 138 ~V~~~~~G-----~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 138 YVTYEKDG-----EEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred EEEEEcCC-----eEEEEEeCEEEECCCCCC
Confidence 45553 22 234789999999999986
No 139
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.89 E-value=9e-09 Score=105.91 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=82.7
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CceEEEccCCCC----C------ccccc---------ccCcccc-cCCcCceeeCCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENG-FKPIVFEARSGI----G------GVWSQ---------TIESTKL-QTPKSFYQFSDF 90 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~----G------G~w~~---------~~~~~~~-~~~~~~~~~~~~ 90 (523)
||+||||||+|+++|..|.+.| ++|+|+|+.+.. | +.+.. ..+.+.. ..+.....+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999997643 1 11100 0010000 001111111100
Q ss_pred ------CCC--C---CCCCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCC
Q 009897 91 ------AWP--N---SVTETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSS 158 (523)
Q Consensus 91 ------~~~--~---~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
.+. + ........+.++.+.|.+.+... ++ .++++++|+++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~~---------------------- 136 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRNQ---------------------- 136 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEcC----------------------
Confidence 000 0 00001145677888888888774 77 788999999998754
Q ss_pred CCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 159 GKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.++|++.++. ++.+|.||.|.|..|
T Consensus 137 ~~~~v~~~~g~-------~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 137 DYVRVTLDNGQ-------QLRAKLLIAADGANS 162 (382)
T ss_pred CeEEEEECCCC-------EEEeeEEEEecCCCh
Confidence 45778776554 799999999999875
No 140
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.89 E-value=2.7e-08 Score=103.90 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=84.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC----Cccccc-------c--------cCcccccCCcCc-eeeC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI----GGVWSQ-------T--------IESTKLQTPKSF-YQFS 88 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~-------~--------~~~~~~~~~~~~-~~~~ 88 (523)
+.+||+||||||+|+++|..|++.|++|+|+|+.... ||.... . ..++++..|... ..+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 5699999999999999999999999999999987532 221110 0 011111111110 1111
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeec
Q 009897 89 DFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEA 168 (523)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 168 (523)
.. ......-...+++.+.++|.+.+.+.|. .++.+ ++.+++... + .++.+.|++.+.
T Consensus 118 ~~-~~~~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~~-~v~~i~~~~--~-----------------~~~~~~v~~~~~ 174 (450)
T PLN00093 118 KT-LKPHEYIGMVRREVLDSFLRERAQSNGA--TLING-LFTRIDVPK--D-----------------PNGPYVIHYTSY 174 (450)
T ss_pred cc-CCCCCeEEEecHHHHHHHHHHHHHHCCC--EEEec-eEEEEEecc--C-----------------CCCcEEEEEEec
Confidence 00 0000000125788999999999998887 66554 577776432 0 024567776542
Q ss_pred c--cCCcceeEEEeCEEEEeeeecC
Q 009897 169 R--NVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 169 ~--~~~~~~~~~~~d~vVlAtG~~s 191 (523)
. ..+++..++.+|.||.|+|..|
T Consensus 175 ~~~~~~g~~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 175 DSGSGAGTPKTLEVDAVIGADGANS 199 (450)
T ss_pred cccccCCCccEEEeCEEEEcCCcch
Confidence 0 0012224799999999999875
No 141
>PRK06185 hypothetical protein; Provisional
Probab=98.89 E-value=1.4e-08 Score=105.39 Aligned_cols=135 Identities=17% Similarity=0.242 Sum_probs=82.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC-----Cccccc----------ccCcccc--cCCcCceee----
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI-----GGVWSQ----------TIESTKL--QTPKSFYQF---- 87 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~----------~~~~~~~--~~~~~~~~~---- 87 (523)
+.+||+|||||++|+++|..|++.|++|+|+|+.+.. |..+.. .++.+.- ..+...+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 5589999999999999999999999999999987543 212211 0111100 001111111
Q ss_pred --------CCCCCCCCCCCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCC
Q 009897 88 --------SDFAWPNSVTETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSS 158 (523)
Q Consensus 88 --------~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
...+.+.. ...+.+...+.++|.+.+.+. ++ .+.++++|+++.... +
T Consensus 85 ~~~~~~~~~~~~~~~~-~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~---------------------~ 140 (407)
T PRK06185 85 RTVTLADFSRLPTPYP-YIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG---------------------G 140 (407)
T ss_pred eEEEecchhhcCCCCC-cEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC---------------------C
Confidence 11111100 112345677888888877765 56 788899999998754 1
Q ss_pred CCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 159 GKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
....|.+...+ ...++.+|.||.|+|.+|
T Consensus 141 ~v~~v~~~~~~----g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 141 RVTGVRARTPD----GPGEIRADLVVGADGRHS 169 (407)
T ss_pred EEEEEEEEcCC----CcEEEEeCEEEECCCCch
Confidence 22234443321 113689999999999885
No 142
>PRK07045 putative monooxygenase; Reviewed
Probab=98.84 E-value=4.1e-08 Score=101.28 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=82.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC---Ccc---ccc---------ccCccccc--CCcCce-eeCC--
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI---GGV---WSQ---------TIESTKLQ--TPKSFY-QFSD-- 89 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~---w~~---------~~~~~~~~--~~~~~~-~~~~-- 89 (523)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. ++. +.. ..+.+.-. .+...+ .+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 379999999999999999999999999999988764 121 111 00000000 000001 1110
Q ss_pred ----CCCCCCCCCC---CCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCC-C
Q 009897 90 ----FAWPNSVTET---FPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSG-K 160 (523)
Q Consensus 90 ----~~~~~~~~~~---~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 160 (523)
+++....... ..++..+.+.|.+.++.. ++ .++++++|++++... ++ .
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---------------------~~~~ 141 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDA---------------------DGTV 141 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECC---------------------CCcE
Confidence 1111100011 135567777776666543 45 799999999998864 12 3
Q ss_pred eEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 161 WNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.|++.+++ ++.+|.||.|.|..|
T Consensus 142 ~~v~~~~g~-------~~~~~~vIgADG~~S 165 (388)
T PRK07045 142 TSVTLSDGE-------RVAPTVLVGADGARS 165 (388)
T ss_pred EEEEeCCCC-------EEECCEEEECCCCCh
Confidence 567766554 789999999999986
No 143
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.83 E-value=2.5e-08 Score=102.24 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=82.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC-------Ccccc---c---------ccCccc-ccCCcCceeeCC-
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI-------GGVWS---Q---------TIESTK-LQTPKSFYQFSD- 89 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-------GG~w~---~---------~~~~~~-~~~~~~~~~~~~- 89 (523)
.||+||||||+|+++|..|++.|++|+|+|+.+.. +.... . .++.+. .-.+...+.+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 68999999999999999999999999999986321 11110 0 011110 001111111110
Q ss_pred -------CCCCCC-CCCCCCChhHHHHHHHHHHHHhC-CCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCC
Q 009897 90 -------FAWPNS-VTETFPDHNKVMEYLQAYAAHFN-LFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGK 160 (523)
Q Consensus 90 -------~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
++.... .......+.++.+.|.+.+...+ + .++++++|+++.... +.
T Consensus 82 ~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~----------------------~~ 137 (374)
T PRK06617 82 KASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVISHN----------------------DY 137 (374)
T ss_pred CCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEEcC----------------------Ce
Confidence 110000 01122457888888888887765 4 678899999998754 45
Q ss_pred eEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 161 WNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 161 ~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.|++.++ ++++|.||.|.|.+|
T Consensus 138 v~v~~~~~--------~~~adlvIgADG~~S 160 (374)
T PRK06617 138 SIIKFDDK--------QIKCNLLIICDGANS 160 (374)
T ss_pred EEEEEcCC--------EEeeCEEEEeCCCCc
Confidence 77777432 799999999999986
No 144
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.82 E-value=5.3e-08 Score=76.16 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHHH
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYLQ 111 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~ 111 (523)
+|+|||||+.|+.+|..|.+.|.+|+++++++.+. ..-.+++.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~---------------------------------~~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL---------------------------------PGFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------TTSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------hhcCHHHHHHHH
Confidence 58999999999999999999999999999987651 112367888999
Q ss_pred HHHHHhCCCCceEeccEEEEEEeCC
Q 009897 112 AYAAHFNLFPSIKFDTKVTSIDRLV 136 (523)
Q Consensus 112 ~~~~~~~l~~~i~~~~~V~~v~~~~ 136 (523)
++.++.++ .+++++.|.++..+.
T Consensus 48 ~~l~~~gV--~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 48 EYLRKRGV--EVHTNTKVKEIEKDG 70 (80)
T ss_dssp HHHHHTTE--EEEESEEEEEEEEET
T ss_pred HHHHHCCC--EEEeCCEEEEEEEeC
Confidence 99999999 899999999999875
No 145
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.82 E-value=4e-08 Score=101.27 Aligned_cols=135 Identities=20% Similarity=0.232 Sum_probs=79.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC------Cc--cccc---------ccCccc-ccCCcCceeeC--
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI------GG--VWSQ---------TIESTK-LQTPKSFYQFS-- 88 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~------GG--~w~~---------~~~~~~-~~~~~~~~~~~-- 88 (523)
|.+||+||||||+|+++|..|++.|++|+|||+.+.. |. .+.. ..+.+. ...+...+.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 5689999999999999999999999999999998741 11 1111 000000 00111111111
Q ss_pred ----CCCCCCCCC-CC--CCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCe
Q 009897 89 ----DFAWPNSVT-ET--FPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKW 161 (523)
Q Consensus 89 ----~~~~~~~~~-~~--~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
.+++..... .. ......+.+-|.+.+...+. .++++++++.+.... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~~~~~~~~v~~~~~~---------------------~~~~ 137 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGL--TTVYDADDVRLHDLA---------------------GDRP 137 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCC--eEEEeeeeEEEEecC---------------------CCcc
Confidence 011111000 00 11234555666666666666 788888887775432 1234
Q ss_pred EEEEe-ecccCCcceeEEEeCEEEEeeeecC
Q 009897 162 NVTVQ-EARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 162 ~v~~~-~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.|++. +++ ..++++|.||-|.|.+|
T Consensus 138 ~V~~~~~g~-----~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 138 YVTFERDGE-----RHRLDCDFIAGCDGFHG 163 (390)
T ss_pred EEEEEECCe-----EEEEEeCEEEECCCCch
Confidence 56664 332 23689999999999986
No 146
>PRK11445 putative oxidoreductase; Provisional
Probab=98.81 E-value=4.7e-08 Score=99.33 Aligned_cols=131 Identities=17% Similarity=0.251 Sum_probs=80.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC---------Cccccc----ccCcccccCCcC------ceeeCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI---------GGVWSQ----TIESTKLQTPKS------FYQFSDFA 91 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---------GG~w~~----~~~~~~~~~~~~------~~~~~~~~ 91 (523)
+||+||||||+|+++|..|++. ++|+|+|+.+.. |+.... ....+.+..+.. .+......
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 6999999999999999999999 999999988743 221111 000000100100 00000000
Q ss_pred CCC----CCC-C-CCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEE
Q 009897 92 WPN----SVT-E-TFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTV 165 (523)
Q Consensus 92 ~~~----~~~-~-~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 165 (523)
+.. .+. . ...++.++.+.|.+. ...++ .+++++.|.+++..+ +.|.|++
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv--~v~~~~~v~~i~~~~----------------------~~~~v~~ 135 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSL-IPASV--EVYHNSLCRKIWRED----------------------DGYHVIF 135 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHH-HhcCC--EEEcCCEEEEEEEcC----------------------CEEEEEE
Confidence 100 001 1 125677787877764 34455 788999999998754 4588876
Q ss_pred eecccCCcceeEEEeCEEEEeeeecC
Q 009897 166 QEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 166 ~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.... ...++.+|.||.|+|..|
T Consensus 136 ~~~g----~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 136 RADG----WEQHITARYLVGADGANS 157 (351)
T ss_pred ecCC----cEEEEEeCEEEECCCCCc
Confidence 3221 123689999999999885
No 147
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.81 E-value=3.7e-08 Score=101.68 Aligned_cols=125 Identities=25% Similarity=0.341 Sum_probs=84.0
Q ss_pred EEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccC----------------CcC----ceeeC-----
Q 009897 34 AIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQT----------------PKS----FYQFS----- 88 (523)
Q Consensus 34 ~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~----------------~~~----~~~~~----- 88 (523)
+|||||++||+||..|+++|.+|+|+|+.+.+|+.+..+-. -++|. +.. +..|.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~-grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGG-GRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCC-ceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 69999999999999999999999999999988875432110 01100 000 00000
Q ss_pred ------CCCCCC-CCCCCCC---ChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCC
Q 009897 89 ------DFAWPN-SVTETFP---DHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSS 158 (523)
Q Consensus 89 ------~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
+.++.. .....|| ...++.+.+.+.+++.++ .++++++|+++....
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~~---------------------- 135 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKDD---------------------- 135 (400)
T ss_pred HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEecC----------------------
Confidence 011100 0012233 357888899999998888 899999999997653
Q ss_pred CCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 159 GKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.|.|++. +. ++.+|.||+|+|..+
T Consensus 136 ~~~~v~~~-~~-------~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 136 NGFGVETS-GG-------EYEADKVILATGGLS 160 (400)
T ss_pred CeEEEEEC-Cc-------EEEcCEEEECCCCcc
Confidence 45777663 32 689999999999873
No 148
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.81 E-value=2.4e-08 Score=103.87 Aligned_cols=128 Identities=19% Similarity=0.283 Sum_probs=79.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-CceEEEccCCCCCcc------ccc---------ccCcc---c--ccCCcC--ceee
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG-FKPIVFEARSGIGGV------WSQ---------TIEST---K--LQTPKS--FYQF 87 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~------w~~---------~~~~~---~--~~~~~~--~~~~ 87 (523)
.+|+|||||++||++|..|.+.| ++|+|||+.+.++.. +.. ..+.+ . ...+.. .+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 36999999999999999999998 699999998876432 111 00000 0 000000 0111
Q ss_pred CC--------CCCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCC
Q 009897 88 SD--------FAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSG 159 (523)
Q Consensus 88 ~~--------~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
.+ .............+.++.+.|.+.+. +. .++++++|++++..+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~--~v~~~~~v~~i~~~~----------------------~ 134 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EG--IASFGKRATQIEEQA----------------------E 134 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--Cc--eEEcCCEEEEEEecC----------------------C
Confidence 10 00000001112345666666655442 12 578999999998754 4
Q ss_pred CeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 160 KWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 160 ~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.|+|++.++. ++.+|.||.|.|.+|
T Consensus 135 ~~~v~~~~g~-------~~~ad~vVgADG~~S 159 (414)
T TIGR03219 135 EVQVLFTDGT-------EYRCDLLIGADGIKS 159 (414)
T ss_pred cEEEEEcCCC-------EEEeeEEEECCCccH
Confidence 5889887765 799999999999985
No 149
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.81 E-value=3.8e-08 Score=103.07 Aligned_cols=135 Identities=15% Similarity=0.201 Sum_probs=82.6
Q ss_pred CcEEEECCChHHHHHHHHHHH----CCCceEEEccCC--CC--------Cccccc-----------------ccCcccc-
Q 009897 31 RKIAIIGAGVSGLLACKYTLE----NGFKPIVFEARS--GI--------GGVWSQ-----------------TIESTKL- 78 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~----~g~~v~v~e~~~--~~--------GG~w~~-----------------~~~~~~~- 78 (523)
+||+||||||+|+++|..|++ .|++|+|||+.+ .. .|.+.. .++.+.-
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 799999999943 21 111100 0111110
Q ss_pred -cCCcCc-----------eeeCCCCCCCCCCCCCCChhHHHHHHHHHHHHhC---CCCceEeccEEEEEEeCCCC-Cccc
Q 009897 79 -QTPKSF-----------YQFSDFAWPNSVTETFPDHNKVMEYLQAYAAHFN---LFPSIKFDTKVTSIDRLVPS-DEDE 142 (523)
Q Consensus 79 -~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~---l~~~i~~~~~V~~v~~~~~~-~~~~ 142 (523)
..+... ..|...+.. .......++..+.+.|.+.+.+.+ + .++++++|++++....+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~~~-- 155 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGK-EDMACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYPND-- 155 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCC-CceEEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEeccccccC--
Confidence 001111 111111100 000112356778888888777764 5 78999999999863100 00
Q ss_pred ccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 143 HSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.....+|++.+++ ++++|.||.|.|.+|
T Consensus 156 --------------~~~~v~v~~~~g~-------~i~a~llVgADG~~S 183 (437)
T TIGR01989 156 --------------NSNWVHITLSDGQ-------VLYTKLLIGADGSNS 183 (437)
T ss_pred --------------CCCceEEEEcCCC-------EEEeeEEEEecCCCC
Confidence 1235677776665 899999999999986
No 150
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.80 E-value=1.2e-08 Score=92.80 Aligned_cols=106 Identities=23% Similarity=0.252 Sum_probs=63.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc-cccc--ccCcccccCCcCce-eeCCCCCCCCCCC-CCCCh
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG-VWSQ--TIESTKLQTPKSFY-QFSDFAWPNSVTE-TFPDH 103 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG-~w~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 103 (523)
+++||+||||||+||+||+.|++.|++|+|||++..+|| .|.- .++.+.++.+...+ .=-+.++.+.... ...+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 458999999999999999999999999999999998886 5654 45555555443221 0001222211111 12355
Q ss_pred hHHHHHHHHHHHHhCCCCceEeccEEEEEEeCC
Q 009897 104 NKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLV 136 (523)
Q Consensus 104 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~ 136 (523)
.++...|..-+-+-|. .|.-.+.|+++--.+
T Consensus 96 ~~~~s~L~s~a~~aGa--kifn~~~vEDvi~r~ 126 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGA--KIFNLTSVEDVIVRE 126 (230)
T ss_dssp HHHHHHHHHHHHTTTE--EEEETEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCC--EEEeeeeeeeeEEEc
Confidence 6667777666666676 677778888876543
No 151
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.79 E-value=3.8e-08 Score=99.84 Aligned_cols=58 Identities=31% Similarity=0.411 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeE-EEEeecccCCcceeEEEe
Q 009897 102 DHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWN-VTVQEARNVSSATEAYQV 180 (523)
Q Consensus 102 ~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ 180 (523)
....+.+.+.+.+++.|. .++.+++|+++.... ++|+ |.+.++ .+.+
T Consensus 145 ~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~----------------------~~v~gv~~~~g--------~i~a 192 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGV--EIRTGTEVTSIDVDG----------------------GRVTGVRTSDG--------EIRA 192 (358)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEESEEEEEEEEET----------------------TEEEEEEETTE--------EEEE
T ss_pred cccchhhhhHHHHHHhhh--hccccccccchhhcc----------------------ccccccccccc--------cccc
Confidence 457888889999999998 899999999999875 5677 887766 6999
Q ss_pred CEEEEeeeecC
Q 009897 181 DFVILCIGRYS 191 (523)
Q Consensus 181 d~vVlAtG~~s 191 (523)
|.||+|+|..+
T Consensus 193 d~vV~a~G~~s 203 (358)
T PF01266_consen 193 DRVVLAAGAWS 203 (358)
T ss_dssp CEEEE--GGGH
T ss_pred ceeEecccccc
Confidence 99999999874
No 152
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.79 E-value=4.6e-08 Score=101.27 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=83.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC---Ccccc---c---------ccCccc-ccCCcCceeeCCC--
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI---GGVWS---Q---------TIESTK-LQTPKSFYQFSDF-- 90 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~---~---------~~~~~~-~~~~~~~~~~~~~-- 90 (523)
|.++|+|||||++||++|..|++.|++|+|+|+.+.+ |.... . .++.+. ...+...+.+.+-
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~ 80 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRK 80 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCC
Confidence 3478999999999999999999999999999998754 21111 0 011110 0001111111110
Q ss_pred -------CC---CC-CCCCC--CCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCC
Q 009897 91 -------AW---PN-SVTET--FPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFS 156 (523)
Q Consensus 91 -------~~---~~-~~~~~--~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (523)
.+ .. .+... ...+..+.+.|.+.+... ++ .++++++|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~~-------------------- 138 (400)
T PRK06475 81 ARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQTG-------------------- 138 (400)
T ss_pred cceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecCC--------------------
Confidence 00 00 00011 135677778887766553 45 689999999998653
Q ss_pred CCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 157 SSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 157 ~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.++|++..+. + .+++.+|.||.|.|.+|
T Consensus 139 --~~v~v~~~~~~--~--~~~~~adlvIgADG~~S 167 (400)
T PRK06475 139 --NSITATIIRTN--S--VETVSAAYLIACDGVWS 167 (400)
T ss_pred --CceEEEEEeCC--C--CcEEecCEEEECCCccH
Confidence 45777765432 1 12689999999999986
No 153
>PLN02661 Putative thiazole synthesis
Probab=98.77 E-value=3.8e-08 Score=97.45 Aligned_cols=140 Identities=16% Similarity=0.264 Sum_probs=78.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCceEEEccCCCCCc-cccc--ccCcccccCCc-CceeeCCCCCCCCCCCCCC--
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN-GFKPIVFEARSGIGG-VWSQ--TIESTKLQTPK-SFYQFSDFAWPNSVTETFP-- 101 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG-~w~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 101 (523)
++.||+|||||++|+++|+.|++. |++|+|+|+...+|| .|.- .+....+..+. ..+.--+.++... ..|.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~--dgy~vv 168 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ--ENYVVI 168 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC--CCeeEe
Confidence 348999999999999999999986 899999999988866 5543 11111111111 0011112233211 1111
Q ss_pred -ChhHHHHHHHHHHH-HhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCC---CeEEEEeecccCC-cce
Q 009897 102 -DHNKVMEYLQAYAA-HFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSG---KWNVTVQEARNVS-SAT 175 (523)
Q Consensus 102 -~~~~~~~yl~~~~~-~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~-~~~ 175 (523)
+..++...|.+.+. +.++ .+..++.|+++..++ +. -.| .|.....++...+ .+.
T Consensus 169 ~ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~--gr----------------VaGVVvnw~~v~~~~~~~s~~dp 228 (357)
T PLN02661 169 KHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG--DR----------------VGGVVTNWALVAQNHDTQSCMDP 228 (357)
T ss_pred cchHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecC--CE----------------EEEEEeecchhhhccCCCCccce
Confidence 22344445555443 3566 788888999887653 00 000 1322222221000 122
Q ss_pred eEEEeCEEEEeeeec
Q 009897 176 EAYQVDFVILCIGRY 190 (523)
Q Consensus 176 ~~~~~d~vVlAtG~~ 190 (523)
..+.+++||+|||+.
T Consensus 229 ~~I~AkaVVlATGh~ 243 (357)
T PLN02661 229 NVMEAKVVVSSCGHD 243 (357)
T ss_pred eEEECCEEEEcCCCC
Confidence 368999999999975
No 154
>PRK07538 hypothetical protein; Provisional
Probab=98.77 E-value=1.1e-07 Score=99.04 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=82.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC---cccc---c---------ccCccc-ccCCcCceeeCC-----
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG---GVWS---Q---------TIESTK-LQTPKSFYQFSD----- 89 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~---~---------~~~~~~-~~~~~~~~~~~~----- 89 (523)
+||+|||||++||++|..|.+.|++|+|||+.+.+. .... . .++.+. ...+...+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999987542 1110 0 000000 001111111110
Q ss_pred ---CCCCC--C--CCCCCCChhHHHHHHHHHHHH-hCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCe
Q 009897 90 ---FAWPN--S--VTETFPDHNKVMEYLQAYAAH-FNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKW 161 (523)
Q Consensus 90 ---~~~~~--~--~~~~~~~~~~~~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
.+... . +......+..+.+.|.+.+.+ .+. ..++++++|++++... +..
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~----------------------~~~ 137 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA----------------------DVT 137 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC----------------------Cce
Confidence 01100 0 001124577777777766644 453 1599999999998754 235
Q ss_pred EEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 162 NVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.+.+.++. +++.+++.+|.||.|.|.+|
T Consensus 138 ~~~~~~~~--~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 138 VVFLGDRA--GGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred EEEEeccC--CCccceEEeeEEEECCCCCH
Confidence 56665543 22344899999999999986
No 155
>PRK05868 hypothetical protein; Validated
Probab=98.77 E-value=6.5e-08 Score=99.03 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=32.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI 65 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 65 (523)
+||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 58999999999999999999999999999998764
No 156
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.76 E-value=1.3e-08 Score=76.61 Aligned_cols=47 Identities=36% Similarity=0.608 Sum_probs=40.1
Q ss_pred EECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc-ccCcccccCC
Q 009897 35 IIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ-TIESTKLQTP 81 (523)
Q Consensus 35 IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~-~~~~~~~~~~ 81 (523)
|||||++||++|..|++.|++|+|+|+++.+||.+.. .+++...+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g 48 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLG 48 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeec
Confidence 8999999999999999999999999999999999987 4555555443
No 157
>PRK06996 hypothetical protein; Provisional
Probab=98.75 E-value=7.4e-08 Score=99.67 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=83.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC----CceEEEccCCCCCccccc------------------ccCcccccCCcCce
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENG----FKPIVFEARSGIGGVWSQ------------------TIESTKLQTPKSFY 85 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g----~~v~v~e~~~~~GG~w~~------------------~~~~~~~~~~~~~~ 85 (523)
.+.+||+||||||+|+++|..|++.| ++|+|+|+.+... .... .++.. ..+...+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~-~~~~~r~~~l~~~~~~~L~~lg~~~~~--~~~~~~~ 85 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA-SANDPRAIALSHGSRVLLETLGAWPAD--ATPIEHI 85 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc-CCCCceEEEecHHHHHHHHhCCCchhc--CCcccEE
Confidence 35689999999999999999999987 4699999975321 0000 01100 0011111
Q ss_pred eeC-------------CCCCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCC
Q 009897 86 QFS-------------DFAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTG 152 (523)
Q Consensus 86 ~~~-------------~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 152 (523)
.+. ++..+. .....++..+.+.|.+.+...++ .+.++++|++++...
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~--~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~~---------------- 145 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPA--LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQDA---------------- 145 (398)
T ss_pred EEecCCCCceEEecccccCCCc--CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeecC----------------
Confidence 111 111110 01124567888899888888876 788999999987654
Q ss_pred CCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 153 KPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
..++|++.++. + .+++++|.||.|.|.
T Consensus 146 ------~~v~v~~~~~~---g-~~~i~a~lvIgADG~ 172 (398)
T PRK06996 146 ------DGVTLALGTPQ---G-ARTLRARIAVQAEGG 172 (398)
T ss_pred ------CeEEEEECCCC---c-ceEEeeeEEEECCCC
Confidence 45778776542 1 137999999999995
No 158
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.74 E-value=1.3e-07 Score=97.00 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
++++||+|||||+.|+++|.+|++.|++|+|+|+...
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 3568999999999999999999999999999999754
No 159
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.74 E-value=5.2e-08 Score=103.23 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=77.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC-CCCcc-cccccCccc----c---cCCcCce----eeC--CCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS-GIGGV-WSQTIESTK----L---QTPKSFY----QFS--DFAWP 93 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~-w~~~~~~~~----~---~~~~~~~----~~~--~~~~~ 93 (523)
..+||+|||||+||++||..+++.|.+|+++|+.. .+|+. ++....+.. . ..-...+ .-. .+.+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45899999999999999999999999999999873 55541 111111100 0 0000000 000 01111
Q ss_pred CC------C-CCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEE
Q 009897 94 NS------V-TETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTV 165 (523)
Q Consensus 94 ~~------~-~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 165 (523)
.. + .+....+..+...+.+.++.. ++ .+ +..+|.++.... .....|.+
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV--~I-~q~~V~~Li~e~---------------------grV~GV~t 138 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNL--DL-FQGEVEDLIVEN---------------------GRVVGVVT 138 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCc--EE-EEeEEEEEEecC---------------------CEEEEEEE
Confidence 00 0 111234556667777777655 45 44 567888877643 12233556
Q ss_pred eecccCCcceeEEEeCEEEEeeeec
Q 009897 166 QEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 166 ~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.++. .+.++.||+|||.+
T Consensus 139 ~dG~-------~I~Ak~VIlATGTF 156 (618)
T PRK05192 139 QDGL-------EFRAKAVVLTTGTF 156 (618)
T ss_pred CCCC-------EEECCEEEEeeCcc
Confidence 5554 89999999999976
No 160
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.73 E-value=8.4e-08 Score=97.92 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=83.8
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCc--ccccccCccc------------ccCCcCceeeCCCCCCCC
Q 009897 32 KIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGG--VWSQTIESTK------------LQTPKSFYQFSDFAWPNS 95 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG--~w~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 95 (523)
||+|||||++|+++|..|.+. |++|+|+|+.+..|| +|..--.++. ...+.....+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999988877 4433100110 000111111111110000
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcce
Q 009897 96 VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSAT 175 (523)
Q Consensus 96 ~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (523)
.......+..+.+++.+ +.+. .+.++++|++++. +. |++.++.
T Consensus 81 ~~Y~~I~r~~f~~~l~~---~l~~--~i~~~~~V~~v~~------------------------~~--v~l~dg~------ 123 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQ---AFPE--GVILGRKAVGLDA------------------------DG--VDLAPGT------ 123 (370)
T ss_pred CCceEEEHHHHHHHHHH---hhcc--cEEecCEEEEEeC------------------------CE--EEECCCC------
Confidence 01122345666666643 3333 3778889998842 12 4445554
Q ss_pred eEEEeCEEEEeeeecCCCCCCCCCCCCCCCCCCCccEEecC
Q 009897 176 EAYQVDFVILCIGRYSDLPNTPDFPMNKGPEVFDGKVLHSM 216 (523)
Q Consensus 176 ~~~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~~~g~~~h~~ 216 (523)
++.+|.||.|.|..+ ..+... |...|.|..+...
T Consensus 124 -~~~A~~VI~A~G~~s---~~~~~~---~~Q~f~G~~~r~~ 157 (370)
T TIGR01789 124 -RINARSVIDCRGFKP---SAHLKG---GFQVFLGREMRLQ 157 (370)
T ss_pred -EEEeeEEEECCCCCC---Cccccc---eeeEEEEEEEEEc
Confidence 899999999999763 111113 6666777666554
No 161
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.72 E-value=1e-08 Score=106.80 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=35.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccc----cCcccc----------cCCcCceeeCCCCCCC--C
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT----IESTKL----------QTPKSFYQFSDFAWPN--S 95 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~----~~~~~~----------~~~~~~~~~~~~~~~~--~ 95 (523)
||||||||++|++||..+++.|.+|+|+|+.+.+||..... ..+... ............+.+. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 79999999999999999999999999999999999987651 111100 0000011110011110 0
Q ss_pred CC-CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcc
Q 009897 96 VT-ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSA 174 (523)
Q Consensus 96 ~~-~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (523)
+. ......+.+...+.+.+++.++ .+.+++.|.++..++ ...+.|.+.+.. .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~---------------------~~i~~V~~~~~~----g 133 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDG---------------------GRITGVIVETKS----G 133 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccc---------------------cccccccccccc----c
Confidence 00 1233445666777888888888 899999999998864 234556665432 1
Q ss_pred eeEEEeCEEEEeeeec
Q 009897 175 TEAYQVDFVILCIGRY 190 (523)
Q Consensus 175 ~~~~~~d~vVlAtG~~ 190 (523)
..++.+|.+|-|||--
T Consensus 134 ~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 134 RKEIRAKVFIDATGDG 149 (428)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 3489999999999954
No 162
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.70 E-value=1.7e-07 Score=96.86 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIG 66 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~G 66 (523)
|.+||+|||||++|+++|++|+++ |.+|+|+|+...+|
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 458999999999999999999998 99999999986554
No 163
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.70 E-value=4.2e-07 Score=95.34 Aligned_cols=133 Identities=19% Similarity=0.261 Sum_probs=84.1
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CceEEEccCCCCCcccccc-----cCccc------c------------------cCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENG-FKPIVFEARSGIGGVWSQT-----IESTK------L------------------QTP 81 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~~-----~~~~~------~------------------~~~ 81 (523)
||+|||+|.+|++||.+++++| .+|+|+|+.+..||.-... ..... . ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 9999999998876642210 00000 0 000
Q ss_pred -------------cCceeeCCCCCCC-------C--C------CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEE
Q 009897 82 -------------KSFYQFSDFAWPN-------S--V------TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSID 133 (523)
Q Consensus 82 -------------~~~~~~~~~~~~~-------~--~------~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~ 133 (523)
..++. ...++.. . . .........+.+.|.+.+++.++ .++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeE
Confidence 00001 0111100 0 0 01113456788899999999998 899999999998
Q ss_pred eCCCCCcccccccccCCCCCCCCCCC-CeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 134 RLVPSDEDEHSWDLWGGTGKPFSSSG-KWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
.++ ++ ...|.+.+.. ++...+.+|.||+|||.++
T Consensus 158 ~~~---------------------~g~v~Gv~~~~~~---g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 158 QDD---------------------QGTVVGVVVKGKG---KGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred ECC---------------------CCcEEEEEEEeCC---CeEEEEecceEEEecCCCC
Confidence 753 12 2334443321 2334578999999999884
No 164
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.67 E-value=2.8e-07 Score=94.73 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
+||+|||||+.|+++|++|+++|.+|+|+|+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 5899999999999999999999999999999653
No 165
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.66 E-value=5e-07 Score=96.26 Aligned_cols=40 Identities=30% Similarity=0.513 Sum_probs=37.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
.++||||||+|.+|++||..+++.|.+|+|+|+.+.+||.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 4589999999999999999999999999999999888774
No 166
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.64 E-value=4.5e-07 Score=93.86 Aligned_cols=107 Identities=23% Similarity=0.325 Sum_probs=85.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHH
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVM 107 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (523)
.++++++|||||+.|+..|..+.+.|.+|||+|+.+.+ .|. ..+++.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i------------------------Lp~---------~D~ei~ 217 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI------------------------LPG---------EDPEIS 217 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC------------------------CCc---------CCHHHH
Confidence 35689999999999999999999999999999998766 111 227888
Q ss_pred HHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEee
Q 009897 108 EYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 108 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
+++.+..++.++ .++++++|..++..+ +...++++++.. .++.+|.|++|+
T Consensus 218 ~~~~~~l~~~gv--~i~~~~~v~~~~~~~----------------------~~v~v~~~~g~~-----~~~~ad~vLvAi 268 (454)
T COG1249 218 KELTKQLEKGGV--KILLNTKVTAVEKKD----------------------DGVLVTLEDGEG-----GTIEADAVLVAI 268 (454)
T ss_pred HHHHHHHHhCCe--EEEccceEEEEEecC----------------------CeEEEEEecCCC-----CEEEeeEEEEcc
Confidence 999888888667 899999999998864 236677766641 168899999999
Q ss_pred eecCCCCCCCCC
Q 009897 188 GRYSDLPNTPDF 199 (523)
Q Consensus 188 G~~s~~p~~p~~ 199 (523)
| ..|++..+
T Consensus 269 G---R~Pn~~~L 277 (454)
T COG1249 269 G---RKPNTDGL 277 (454)
T ss_pred C---CccCCCCC
Confidence 9 56887754
No 167
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.63 E-value=4.3e-07 Score=96.01 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC--CCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG--IGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~--~GG 67 (523)
+++||+|||+|++|++||.++++.|.+|+|+||.+. .||
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG 43 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG 43 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc
Confidence 458999999999999999999999999999999863 555
No 168
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.60 E-value=4.4e-07 Score=94.58 Aligned_cols=134 Identities=20% Similarity=0.307 Sum_probs=80.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccc-----cCcccc-------cCCc----------------C
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT-----IESTKL-------QTPK----------------S 83 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~-----~~~~~~-------~~~~----------------~ 83 (523)
||+|||+|.+||+||.+++++|.+|+|+|+.+..||.-... ..+... +++. .
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 79999999999999999999999999999999888743220 111000 0000 0
Q ss_pred ---------------ceeeCCCCCCC----------------C------CC----CCCCChhHHHHHHHHHHHHhCCCCc
Q 009897 84 ---------------FYQFSDFAWPN----------------S------VT----ETFPDHNKVMEYLQAYAAHFNLFPS 122 (523)
Q Consensus 84 ---------------~~~~~~~~~~~----------------~------~~----~~~~~~~~~~~yl~~~~~~~~l~~~ 122 (523)
+... ..++.. . .. .....+..+.+.+.+.+++.++ .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv--~ 157 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGV--D 157 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTE--E
T ss_pred hhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCe--e
Confidence 0000 011110 0 00 0112567788899999999997 8
Q ss_pred eEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 123 IKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 123 i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
|+++++|+++..++ ..---|...+.. +++...+.++.||+|||.+.
T Consensus 158 i~~~~~~~~Li~e~---------------------g~V~Gv~~~~~~--~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 158 IRFNTRVTDLITED---------------------GRVTGVVAENPA--DGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp EEESEEEEEEEEET---------------------TEEEEEEEEETT--TCEEEEEEESEEEE----BG
T ss_pred eeccceeeeEEEeC---------------------CceeEEEEEECC--CCeEEEEeeeEEEeccCccc
Confidence 99999999999864 111223334222 34556899999999999884
No 169
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.59 E-value=8.5e-07 Score=94.48 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.+||+|||||+.|+++|..|+++|++|+|+|+.+..+|
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 48999999999999999999999999999999754433
No 170
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.57 E-value=6.2e-07 Score=91.34 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=36.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC--CceEEEccCCCCCc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENG--FKPIVFEARSGIGG 67 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG 67 (523)
|+.+||+|||||+.|+++|++|.+.+ .+|+|+||.+.+|.
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 45689999999999999999999987 99999999988764
No 171
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.56 E-value=6.3e-07 Score=92.05 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=77.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++|+|||||+.|+.+|..|.+.|.+|+++++.+.+. ... ..+++..++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------------------------~~~-~~~~~~~~l 189 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------------------------ASL-MPPEVSSRL 189 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-------------------------------chh-CCHHHHHHH
Confidence 689999999999999999999999999999876441 001 114566777
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+..++.++ .+.++++|.+++... +.+.|++.++. ++.+|.||+|+|..
T Consensus 190 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g~-------~i~~D~vI~a~G~~ 238 (377)
T PRK04965 190 QHRLTEMGV--HLLLKSQLQGLEKTD----------------------SGIRATLDSGR-------SIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHhCCC--EEEECCeEEEEEccC----------------------CEEEEEEcCCc-------EEECCEEEECcCCC
Confidence 788888888 889999999998653 45777776665 89999999999954
No 172
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.55 E-value=6.4e-07 Score=98.71 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI 65 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 65 (523)
+||+|||||++|+++|++|+++|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 69999999999999999999999999999997544
No 173
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.55 E-value=1.8e-06 Score=91.19 Aligned_cols=103 Identities=24% Similarity=0.272 Sum_probs=78.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||+.|+.+|..|.+.|.+|+++|+.+.+. +. ...++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------PG--EDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------CC--CCHHHHHH
Confidence 3789999999999999999999999999999976441 00 12456777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++... +...+.+.++. ..++.+|.||+|+|.
T Consensus 217 ~~~~l~~~gi--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g~-----~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 217 VAKALKKKGV--KILTNTKVTAVEKND----------------------DQVVYENKGGE-----TETLTGEKVLVAVGR 267 (461)
T ss_pred HHHHHHHcCC--EEEeCCEEEEEEEeC----------------------CEEEEEEeCCc-----EEEEEeCEEEEecCC
Confidence 7788888888 899999999998653 34555544331 237899999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
. |+..
T Consensus 268 ~---p~~~ 272 (461)
T TIGR01350 268 K---PNTE 272 (461)
T ss_pred c---ccCC
Confidence 4 6655
No 174
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.54 E-value=1.2e-06 Score=95.67 Aligned_cols=143 Identities=16% Similarity=0.240 Sum_probs=84.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHC-CCceEEEccCCCC---C---ccccc---ccC-----------c-----ccccCC--
Q 009897 30 ERKIAIIGAGVSGLLACKYTLEN-GFKPIVFEARSGI---G---GVWSQ---TIE-----------S-----TKLQTP-- 81 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~---G---G~w~~---~~~-----------~-----~~~~~~-- 81 (523)
.+||+||||||+||++|..|++. |++|+|||+.+.. | |.+.. ... + +....+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 47999999999999999999994 9999999988643 1 11111 000 0 000000
Q ss_pred ---cCcee---eCCCCCCCC-CCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCC
Q 009897 82 ---KSFYQ---FSDFAWPNS-VTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKP 154 (523)
Q Consensus 82 ---~~~~~---~~~~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (523)
..... +.+.+.... ......++..+.+.|.+.+.+.+..-.++++++|++++.+. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~--~--------------- 174 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDE--E--------------- 174 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECC--C---------------
Confidence 00000 000000000 00112345567788888887765322578899999998764 0
Q ss_pred CCCCCCeEEEEeeccc-CCcceeEEEeCEEEEeeeecC
Q 009897 155 FSSSGKWNVTVQEARN-VSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 155 ~~~~~~~~v~~~~~~~-~~~~~~~~~~d~vVlAtG~~s 191 (523)
.....+|++++..+ .+++.+++++|+||-|.|.+|
T Consensus 175 --~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 175 --GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred --CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch
Confidence 01346777765310 023345899999999999997
No 175
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.53 E-value=2.6e-06 Score=90.16 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=77.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+. +. ...++.++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHH
Confidence 4789999999999999999999999999999876441 11 12566777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|..++... + ++...+...++ +..++.+|.||+|+|.
T Consensus 227 l~~~l~~~gI--~i~~~~~v~~i~~~~--~------------------~~~~~~~~~~g-----~~~~i~~D~vi~a~G~ 279 (472)
T PRK05976 227 VARLLKKLGV--RVVTGAKVLGLTLKK--D------------------GGVLIVAEHNG-----EEKTLEADKVLVSVGR 279 (472)
T ss_pred HHHHHHhcCC--EEEeCcEEEEEEEec--C------------------CCEEEEEEeCC-----ceEEEEeCEEEEeeCC
Confidence 8777888888 899999999998521 0 12222223333 2236899999999995
Q ss_pred cCCCCCCCC
Q 009897 190 YSDLPNTPD 198 (523)
Q Consensus 190 ~s~~p~~p~ 198 (523)
.|+.+.
T Consensus 280 ---~p~~~~ 285 (472)
T PRK05976 280 ---RPNTEG 285 (472)
T ss_pred ---ccCCCC
Confidence 466543
No 176
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.53 E-value=1.4e-06 Score=89.72 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
|.+||+|||+|++|+++|..|.+.|.+|+|+|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 56899999999999999999999999999999863
No 177
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.52 E-value=1.1e-06 Score=84.32 Aligned_cols=140 Identities=21% Similarity=0.292 Sum_probs=93.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC--c---------------------------ccccc--cCccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG--G---------------------------VWSQT--IESTK 77 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--G---------------------------~w~~~--~~~~~ 77 (523)
+..+|+|||||.-|+++|++|+++|.++.++|+-+-+- | .|... ..+..
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 55899999999999999999999999999999865321 1 11110 00000
Q ss_pred ccC--------CcC--------------------------ceeeC-CCCCCCCC------CCCCCChhHHHHHHHHHHHH
Q 009897 78 LQT--------PKS--------------------------FYQFS-DFAWPNSV------TETFPDHNKVMEYLQAYAAH 116 (523)
Q Consensus 78 ~~~--------~~~--------------------------~~~~~-~~~~~~~~------~~~~~~~~~~~~yl~~~~~~ 116 (523)
+.. +.+ .-.|+ ..+++++| ...+....+...-+++++++
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~ 165 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE 165 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence 000 000 00233 33444433 34556678888999999999
Q ss_pred hCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecCCCCCC
Q 009897 117 FNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYSDLPNT 196 (523)
Q Consensus 117 ~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s~~p~~ 196 (523)
.|. .++.+.+|..+..++ ++ .....|.+.+++ .+.++++|+++|+. -...+
T Consensus 166 ~G~--i~~dg~~v~~~~~~~--e~-----------------~~~v~V~Tt~gs-------~Y~akkiI~t~GaW-i~klL 216 (399)
T KOG2820|consen 166 LGV--IFRDGEKVKFIKFVD--EE-----------------GNHVSVQTTDGS-------IYHAKKIIFTVGAW-INKLL 216 (399)
T ss_pred cCe--EEecCcceeeEeecc--CC-----------------CceeEEEeccCC-------eeecceEEEEecHH-HHhhc
Confidence 998 789999999998775 11 234566666665 79999999999987 33444
Q ss_pred C
Q 009897 197 P 197 (523)
Q Consensus 197 p 197 (523)
|
T Consensus 217 ~ 217 (399)
T KOG2820|consen 217 P 217 (399)
T ss_pred C
Confidence 4
No 178
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.50 E-value=1.6e-06 Score=91.00 Aligned_cols=100 Identities=24% Similarity=0.319 Sum_probs=76.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .. ..+++.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHH
Confidence 4789999999999999999999999999999976541 00 12566777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|++++... +...+.. ++. ++.+|.||+|+|.
T Consensus 204 ~~~~l~~~GI--~i~~~~~V~~i~~~~----------------------~~v~v~~-~g~-------~i~~D~viva~G~ 251 (438)
T PRK07251 204 AKQYMEEDGI--TFLLNAHTTEVKNDG----------------------DQVLVVT-EDE-------TYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHcCC--EEEcCCEEEEEEecC----------------------CEEEEEE-CCe-------EEEcCEEEEeeCC
Confidence 8888888888 899999999998643 2344432 232 7899999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 252 ---~p~~~ 256 (438)
T PRK07251 252 ---KPNTE 256 (438)
T ss_pred ---CCCcc
Confidence 46654
No 179
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.50 E-value=1.6e-06 Score=91.64 Aligned_cols=104 Identities=20% Similarity=0.326 Sum_probs=79.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ..+++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHH
Confidence 3789999999999999999999999999999976541 00 12567778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+++..++.++ .++++++|.+++... +...+.+.++. +.+++.+|.||+|+|.
T Consensus 219 l~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~gg----~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 219 AERALKKRGI--KIKTGAKAKKVEQTD----------------------DGVTVTLEDGG----KEETLEADYVLVAVGR 270 (462)
T ss_pred HHHHHHHcCC--EEEeCCEEEEEEEeC----------------------CEEEEEEEeCC----eeEEEEeCEEEEeeCC
Confidence 8888888888 899999999998754 34556555431 2237899999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 271 ---~p~~~ 275 (462)
T PRK06416 271 ---RPNTE 275 (462)
T ss_pred ---ccCCC
Confidence 46654
No 180
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.50 E-value=1.7e-06 Score=93.47 Aligned_cols=35 Identities=26% Similarity=0.542 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
...+|+|||||++||++|..|.+.|++|+|||+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 44899999999999999999999999999999975
No 181
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.49 E-value=2e-07 Score=93.76 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=73.7
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEE-ccCCCCCcccccccCcccccC------------------C-cCceeeCCCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVF-EARSGIGGVWSQTIESTKLQT------------------P-KSFYQFSDFA 91 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~-e~~~~~GG~w~~~~~~~~~~~------------------~-~~~~~~~~~~ 91 (523)
||+|||||.||+.||..+++.|.+|+++ .+.+.+|..- +.|++.-.- . ....+|.-..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~--Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS--CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S--SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc--chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 7999999999999999999999999999 4444444321 111111100 0 0000111000
Q ss_pred C---CCCC-CCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEe
Q 009897 92 W---PNSV-TETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQ 166 (523)
Q Consensus 92 ~---~~~~-~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 166 (523)
. |..+ .+...++..+.+++++.++.. ++ .+ ++.+|+++.... ...+-|.+.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl--~i-~~~~V~~l~~e~---------------------~~v~GV~~~ 134 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNL--TI-IQGEVTDLIVEN---------------------GKVKGVVTK 134 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--EE-EES-EEEEEECT---------------------TEEEEEEET
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCe--EE-EEcccceEEecC---------------------CeEEEEEeC
Confidence 0 1000 112356788888998888874 34 33 578999998764 234556666
Q ss_pred ecccCCcceeEEEeCEEEEeeeec
Q 009897 167 EARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 167 ~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
++. .+.+|.||+|||.+
T Consensus 135 ~g~-------~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 135 DGE-------EIEADAVVLATGTF 151 (392)
T ss_dssp TSE-------EEEECEEEE-TTTG
T ss_pred CCC-------EEecCEEEEecccc
Confidence 665 89999999999965
No 182
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.49 E-value=1.7e-06 Score=93.03 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
+.+||+|||||+.|+++|+.|+++|++|+|+|+.+.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 458999999999999999999999999999999653
No 183
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.49 E-value=1.7e-06 Score=91.18 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHC-C-CceEEEccCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLEN-G-FKPIVFEARSG 64 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~-g-~~v~v~e~~~~ 64 (523)
.+||+|||||+.|+++|+.|++. + .+|+|+|+.+.
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 48999999999999999999996 4 69999999764
No 184
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.49 E-value=1.4e-06 Score=92.79 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
++||+|||||+.|+++|+.|+++|++|+|+|+.+..+|
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 38999999999999999999999999999999864433
No 185
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.49 E-value=1e-06 Score=91.07 Aligned_cols=97 Identities=26% Similarity=0.311 Sum_probs=76.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+.+. ...+++.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 368999999999999999999999999999987654210 012466778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++.. +...+++.+++ ++.+|.||+|+|.
T Consensus 192 l~~~l~~~GV--~i~~~~~V~~i~~~-----------------------~~~~v~l~~g~-------~i~aD~Vv~a~G~ 239 (396)
T PRK09754 192 LLQRHQQAGV--RILLNNAIEHVVDG-----------------------EKVELTLQSGE-------TLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHCCC--EEEeCCeeEEEEcC-----------------------CEEEEEECCCC-------EEECCEEEECCCC
Confidence 8888888898 89999999988752 23556666654 7999999999995
Q ss_pred c
Q 009897 190 Y 190 (523)
Q Consensus 190 ~ 190 (523)
.
T Consensus 240 ~ 240 (396)
T PRK09754 240 S 240 (396)
T ss_pred C
Confidence 4
No 186
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.47 E-value=1.3e-06 Score=85.13 Aligned_cols=109 Identities=28% Similarity=0.387 Sum_probs=90.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++++|||||..||..+.-..+.|.+||++|-.+.+|+..- .++..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------~Eisk 256 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------GEISK 256 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------HHHHH
Confidence 558999999999999999999999999999999888875421 46777
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
.++......++ .++++++|..+++.. ++...|++.+.. +++.+++++|.+++|+|
T Consensus 257 ~~qr~L~kQgi--kF~l~tkv~~a~~~~---------------------dg~v~i~ve~ak--~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 257 AFQRVLQKQGI--KFKLGTKVTSATRNG---------------------DGPVEIEVENAK--TGKKETLECDVLLVSIG 311 (506)
T ss_pred HHHHHHHhcCc--eeEeccEEEEeeccC---------------------CCceEEEEEecC--CCceeEEEeeEEEEEcc
Confidence 88888888888 899999999999876 456778887765 44566899999999999
Q ss_pred ecCCCCCCCC
Q 009897 189 RYSDLPNTPD 198 (523)
Q Consensus 189 ~~s~~p~~p~ 198 (523)
.+|.+-.
T Consensus 312 ---RrP~t~G 318 (506)
T KOG1335|consen 312 ---RRPFTEG 318 (506)
T ss_pred ---CcccccC
Confidence 4566543
No 187
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=2.3e-06 Score=92.72 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=36.1
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 26 GPKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 26 ~~~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
...+++||+|||+|.|||+||.++++.|.+|+|+|+....+|
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 334568999999999999999999999999999999755444
No 188
>PRK07121 hypothetical protein; Validated
Probab=98.47 E-value=8.1e-07 Score=94.52 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=36.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
.++||+|||+|.+|++||.++++.|.+|+|+||....||.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 4689999999999999999999999999999998877763
No 189
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.47 E-value=2.6e-06 Score=88.53 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI 65 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 65 (523)
+||+|||||..|+++|.+|++.|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 59999999999999999999999999999998643
No 190
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=1.6e-06 Score=93.84 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGG 67 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG 67 (523)
|+++||+|||||.+||+||.++++. |.+|+|+||....||
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 4568999999999999999999987 489999999876554
No 191
>PRK06116 glutathione reductase; Validated
Probab=98.45 E-value=2.3e-06 Score=90.02 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=80.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ...++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------RG--FDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------cc--cCHHHHHH
Confidence 4789999999999999999999999999999865431 00 12467778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++... ++.+.|.+.++. ++.+|.||+|+|.
T Consensus 214 l~~~L~~~GV--~i~~~~~V~~i~~~~---------------------~g~~~v~~~~g~-------~i~~D~Vv~a~G~ 263 (450)
T PRK06116 214 LVEEMEKKGI--RLHTNAVPKAVEKNA---------------------DGSLTLTLEDGE-------TLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHCCc--EEECCCEEEEEEEcC---------------------CceEEEEEcCCc-------EEEeCEEEEeeCC
Confidence 8888888888 899999999998754 233566665554 7899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 264 ---~p~~~ 268 (450)
T PRK06116 264 ---EPNTD 268 (450)
T ss_pred ---CcCCC
Confidence 46654
No 192
>PLN02985 squalene monooxygenase
Probab=98.45 E-value=2.8e-06 Score=90.38 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 45899999999999999999999999999999875
No 193
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.44 E-value=2.4e-06 Score=90.20 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=79.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .. ...++.++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------------SF--LDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--CCHHHHHH
Confidence 4789999999999999999999999999999976541 00 12567777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .+.++++|++++... +.+.+++.++. ++.+|.||+|+|.
T Consensus 222 l~~~l~~~gI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~g~-------~i~~D~vi~a~G~ 270 (461)
T PRK05249 222 LSYHLRDSGV--TIRHNEEVEKVEGGD----------------------DGVIVHLKSGK-------KIKADCLLYANGR 270 (461)
T ss_pred HHHHHHHcCC--EEEECCEEEEEEEeC----------------------CeEEEEECCCC-------EEEeCEEEEeecC
Confidence 8887888888 899999999998653 34666665543 7899999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 271 ---~p~~~ 275 (461)
T PRK05249 271 ---TGNTD 275 (461)
T ss_pred ---Ccccc
Confidence 46654
No 194
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.43 E-value=1.2e-06 Score=86.20 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=67.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC------CCceEEEccCCCCCccccc------------------ccCcccccCCcCcee
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN------GFKPIVFEARSGIGGVWSQ------------------TIESTKLQTPKSFYQ 86 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~------g~~v~v~e~~~~~GG~w~~------------------~~~~~~~~~~~~~~~ 86 (523)
.||+||||||+||+||.+|.+. .++|+|+|+...+||.-.. .-+.+.+.+.++.+.
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~~ 156 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKFK 156 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccccee
Confidence 8999999999999999998773 5789999999999985332 111111222222222
Q ss_pred eC---------C-CCCCCCCCCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCC
Q 009897 87 FS---------D-FAWPNSVTETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLV 136 (523)
Q Consensus 87 ~~---------~-~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~ 136 (523)
|- - .|+.+. .....+-.++.+||-+.|+.+|+ .|.-+..+..|-.++
T Consensus 157 fLt~~~~i~vPv~~pm~Nh-GNYvv~L~~~v~wLg~kAEe~Gv--EiyPg~aaSevly~e 213 (621)
T KOG2415|consen 157 FLTGKGRISVPVPSPMDNH-GNYVVSLGQLVRWLGEKAEELGV--EIYPGFAASEVLYDE 213 (621)
T ss_pred eeccCceeecCCCcccccC-CcEEEEHHHHHHHHHHHHHhhCc--eeccccchhheeEcC
Confidence 21 1 122221 23445778999999999999998 565555555555543
No 195
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.43 E-value=3e-06 Score=90.00 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=33.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
+.||+|||+|.|||+||..+.+.|. |+|+||.+..||
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g 38 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG 38 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC
Confidence 3699999999999999999999997 999999876554
No 196
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.42 E-value=2.9e-06 Score=91.91 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=33.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
||+|||+|.+|++||..+++.|.+|+|+|+....||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999875543
No 197
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=3e-06 Score=91.43 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
++.||+|||+|.|||+||.++.+.|.+|+|+||....+|
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 568999999999999999999999999999999865554
No 198
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.42 E-value=1.5e-06 Score=87.87 Aligned_cols=129 Identities=21% Similarity=0.277 Sum_probs=92.1
Q ss_pred CcEEEECCChHHHHHHHHHHHC-------------CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN-------------GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVT 97 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~-------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (523)
.+|+|+|||+.|...|.+|.+. .++|+++|+.+.+.
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 4799999999999999998763 14899999987661
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeE
Q 009897 98 ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEA 177 (523)
Q Consensus 98 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (523)
+.+ .+++.+|.+++.++.|+ .+++++.|++|+++. |++.+++ + .
T Consensus 205 p~~--~~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~~~--------------------------v~~~~g~----~--~ 248 (405)
T COG1252 205 PMF--PPKLSKYAERALEKLGV--EVLLGTPVTEVTPDG--------------------------VTLKDGE----E--E 248 (405)
T ss_pred cCC--CHHHHHHHHHHHHHCCC--EEEcCCceEEECCCc--------------------------EEEccCC----e--e
Confidence 112 26788899999999999 899999999999865 6666664 1 4
Q ss_pred EEeCEEEEeeeecCCCCCCCCCCCCCCCCC-CCccEEecCCCCchhhhcCCCEEEEEc
Q 009897 178 YQVDFVILCIGRYSDLPNTPDFPMNKGPEV-FDGKVLHSMNDDLAAELINGKRVTVIG 234 (523)
Q Consensus 178 ~~~d~vVlAtG~~s~~p~~p~~p~~~g~~~-~~g~~~h~~~~~~~~~~~~~k~V~VvG 234 (523)
+.++.+|.|+|.. ..|-.-++- |.+. -.|+++-...... .....|-++|
T Consensus 249 I~~~tvvWaaGv~-a~~~~~~l~---~~e~dr~Grl~V~~~L~~----~~~~~IFa~G 298 (405)
T COG1252 249 IPADTVVWAAGVR-ASPLLKDLS---GLETDRRGRLVVNPTLQV----PGHPDIFAAG 298 (405)
T ss_pred EecCEEEEcCCCc-CChhhhhcC---hhhhccCCCEEeCCCccc----CCCCCeEEEe
Confidence 9999999999987 344433331 3332 2355544443332 2235677777
No 199
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.42 E-value=2.7e-06 Score=86.94 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
+||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999998753
No 200
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.42 E-value=1.6e-06 Score=92.01 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=77.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccc--ccccCccc-------ccCCc---------CceeeCCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW--SQTIESTK-------LQTPK---------SFYQFSDFAW 92 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w--~~~~~~~~-------~~~~~---------~~~~~~~~~~ 92 (523)
+||+|||||++|+.+|..+++.|.+|+++|+....+|.. .....+.. +.... ...+|.....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 589999999999999999999999999999875443321 11111000 00000 0001111100
Q ss_pred ---CCCC-CCCCCChhHHHHHHHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEee
Q 009897 93 ---PNSV-TETFPDHNKVMEYLQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQE 167 (523)
Q Consensus 93 ---~~~~-~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 167 (523)
+..+ .+...++..+.+.+++.+++. ++ .+ +..+|+++.... ......|.+.+
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV--~I-le~~Vv~li~e~--------------------~g~V~GV~t~~ 137 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNL--SL-FQGEVEDLILED--------------------NDEIKGVVTQD 137 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCc--EE-EEeEEEEEEEec--------------------CCcEEEEEECC
Confidence 0000 112345667777888878776 34 34 455777776542 01335566666
Q ss_pred cccCCcceeEEEeCEEEEeeeec
Q 009897 168 ARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 168 ~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
+. .+.+|.||+|||.+
T Consensus 138 G~-------~I~Ad~VILATGtf 153 (617)
T TIGR00136 138 GL-------KFRAKAVIITTGTF 153 (617)
T ss_pred CC-------EEECCEEEEccCcc
Confidence 54 79999999999987
No 201
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.42 E-value=3.8e-06 Score=88.78 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=78.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ..+++..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHH
Confidence 3789999999999999999999999999999976441 00 12456777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+++..+..++ .+.++++|..++... +...+++.... ...++.+|.||+|+|.
T Consensus 213 l~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~~----~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 213 VEEALAEEGI--EVVTSAQVKAVSVRG----------------------GGKIITVEKPG----GQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHcCC--EEEcCcEEEEEEEcC----------------------CEEEEEEEeCC----CceEEEeCEEEEeECC
Confidence 8888888888 899999999998753 33555554311 1137899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 265 ---~p~~~ 269 (463)
T TIGR02053 265 ---RPNTD 269 (463)
T ss_pred ---CcCCC
Confidence 46655
No 202
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=2.1e-06 Score=92.37 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC-CCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG-IGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~-~GG 67 (523)
++.||+|||+|.|||+||..+ +.|.+|+|+|+... .||
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG 44 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSG 44 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCc
Confidence 558999999999999999999 99999999999764 444
No 203
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.40 E-value=3.5e-06 Score=88.54 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=78.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ..+++.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHH
Confidence 4789999999999999999999999999999865430 11 12567777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .+.++++|.+++... +...|++.++. ++.+|.||+|+|.
T Consensus 213 l~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g~-------~i~~D~viva~G~ 261 (446)
T TIGR01424 213 LARNMEGRGI--RIHPQTSLTSITKTD----------------------DGLKVTLSHGE-------EIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEEcC----------------------CeEEEEEcCCc-------EeecCEEEEeeCC
Confidence 8888888888 899999999998653 23566665554 7999999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 262 ---~pn~~ 266 (446)
T TIGR01424 262 ---SPNTK 266 (446)
T ss_pred ---CcCCC
Confidence 46653
No 204
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=3.5e-06 Score=91.88 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
+++||+|||+|.|||+||..+++.|.+|+|+|+....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 458999999999999999999999999999999875543
No 205
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.40 E-value=2.4e-06 Score=90.07 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
+||+|||||.+||+||..+++.|.+|+|+|+...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 7999999999999999999999999999999764
No 206
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.39 E-value=1.9e-06 Score=90.81 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~ 63 (523)
+..||+|||||++|+++|++|++. |.+|+|+|+..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 458999999999999999999997 89999999864
No 207
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=3.5e-07 Score=95.94 Aligned_cols=45 Identities=36% Similarity=0.617 Sum_probs=40.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 27 ~~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
.+..++|+|||||+|||+||++|.+.|++|+|+|.++.+||.-+.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 345589999999999999999999999999999999999996554
No 208
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.38 E-value=4.3e-06 Score=87.87 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=78.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+. ..+ ..++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~~--d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RSF--DSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------ccc--CHHHHHH
Confidence 4789999999999999999999999999999876541 111 2456777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..+..++ .+++++.|.+++... .+...+++.++. ..+.+|.||+|+|.
T Consensus 213 ~~~~l~~~gI--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g~------~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 213 ITEEYEKEGI--NVHKLSKPVKVEKTV---------------------EGKLVIHFEDGK------SIDDVDELIWAIGR 263 (450)
T ss_pred HHHHHHHcCC--EEEcCCEEEEEEEeC---------------------CceEEEEECCCc------EEEEcCEEEEeeCC
Confidence 7777888888 899999999998643 123455554441 26899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 264 ---~pn~~ 268 (450)
T TIGR01421 264 ---KPNTK 268 (450)
T ss_pred ---CcCcc
Confidence 46654
No 209
>PRK08275 putative oxidoreductase; Provisional
Probab=98.38 E-value=2.1e-06 Score=92.59 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGI 65 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~ 65 (523)
+++||+|||+|.|||+||.++++. |.+|+|+||....
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 458999999999999999999986 6899999998753
No 210
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=4.4e-06 Score=91.18 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG 66 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 66 (523)
+++||+|||+|.|||+||.++++.|.+|+|+|+...+|
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 45899999999999999999999999999999866554
No 211
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.37 E-value=5.8e-06 Score=86.32 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=34.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
+++||+|||+|.|||+||.++ +.|.+|+|+||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a-~~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNL-RKDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHh-ccCCCEEEEecCCCCCCc
Confidence 458999999999999999998 479999999998876663
No 212
>PRK06370 mercuric reductase; Validated
Probab=98.36 E-value=5.4e-06 Score=87.56 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=78.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ...++.++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------------PR--EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------cc--cCHHHHHH
Confidence 4799999999999999999999999999999976541 00 12456777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .+.++++|.+++..+ +...|.+.... ...++.+|.||+|+|.
T Consensus 218 l~~~l~~~GV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~~----~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 218 VREILEREGI--DVRLNAECIRVERDG----------------------DGIAVGLDCNG----GAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEEEeCC----CceEEEeCEEEECcCC
Confidence 8888888888 899999999998753 23445443211 1126899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 270 ---~pn~~ 274 (463)
T PRK06370 270 ---VPNTD 274 (463)
T ss_pred ---CcCCC
Confidence 46654
No 213
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.36 E-value=5.9e-06 Score=87.25 Aligned_cols=106 Identities=27% Similarity=0.333 Sum_probs=78.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. .. ...++.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHH
Confidence 4889999999999999999999999999999876541 11 11456677
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++... +...+++.... +++.+.+.+|.||+|+|.
T Consensus 221 l~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~~~--~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 221 LQKALTKQGM--KFKLGSKVTGATAGA----------------------DGVSLTLEPAA--GGAAETLQADYVLVAIGR 274 (466)
T ss_pred HHHHHHhcCC--EEEECcEEEEEEEcC----------------------CeEEEEEEEcC--CCceeEEEeCEEEEccCC
Confidence 7777888888 899999999998643 23555554321 112237899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 275 ---~pn~~ 279 (466)
T PRK06115 275 ---RPYTQ 279 (466)
T ss_pred ---ccccc
Confidence 46653
No 214
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.36 E-value=4.9e-06 Score=87.92 Aligned_cols=105 Identities=24% Similarity=0.254 Sum_probs=78.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+. +. ...++.++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--cCHHHHHH
Confidence 4789999999999999999999999999999876441 11 12556778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++... +...+.+... +++..++.+|.||+|+|.
T Consensus 219 l~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~---~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 219 IAKQYKKLGV--KILTGTKVESIDDNG----------------------SKVTVTVSKK---DGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHCCC--EEEECCEEEEEEEeC----------------------CeEEEEEEec---CCCeEEEEeCEEEECcCc
Confidence 8888888898 899999999998643 3455555421 112237899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 272 ---~pn~~ 276 (466)
T PRK07818 272 ---APRVE 276 (466)
T ss_pred ---ccCCC
Confidence 46654
No 215
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.35 E-value=5e-06 Score=89.27 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=36.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.++.||+|||+|.|||+||.++++.|.+|+|+|+....||
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 3568999999999999999999999999999999886654
No 216
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.35 E-value=2.7e-05 Score=74.38 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CC-ceEEEccCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN-GF-KPIVFEARSG 64 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~-g~-~v~v~e~~~~ 64 (523)
..++|+|+|||.+|+.+|..+.++ |. +|.|+|..++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 348999999999999999998874 44 7999998764
No 217
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.35 E-value=3.5e-06 Score=91.17 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.+.||+|||+|.|||+||.++++.|.+|+|+||....+|
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 458999999999999999999999999999999866554
No 218
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=6.1e-06 Score=87.41 Aligned_cols=105 Identities=27% Similarity=0.324 Sum_probs=79.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .. ...++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHHH
Confidence 4799999999999999999999999999999876441 11 12566677
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++... +...+.+.+++ ++...+.+|.|++|+|.
T Consensus 230 ~~~~l~~~gi--~i~~~~~v~~i~~~~----------------------~~v~v~~~~~~---g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 230 AAKAFTKQGL--DIHLGVKIGEIKTGG----------------------KGVSVAYTDAD---GEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHcCc--EEEeCcEEEEEEEcC----------------------CEEEEEEEeCC---CceeEEEcCEEEEccCC
Confidence 7777777888 899999999998754 33455554431 22347899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+.+
T Consensus 283 ---~p~~~ 287 (475)
T PRK06327 283 ---VPNTD 287 (475)
T ss_pred ---ccCCC
Confidence 46665
No 219
>PLN02507 glutathione reductase
Probab=98.34 E-value=5.5e-06 Score=88.05 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=78.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. .. ..+++.++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHH
Confidence 4789999999999999999999999999999865430 11 12567788
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++... +...|.+.++. ++.+|.|++|+|.
T Consensus 250 l~~~l~~~GI--~i~~~~~V~~i~~~~----------------------~~~~v~~~~g~-------~i~~D~vl~a~G~ 298 (499)
T PLN02507 250 VARNLEGRGI--NLHPRTNLTQLTKTE----------------------GGIKVITDHGE-------EFVADVVLFATGR 298 (499)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEeC----------------------CeEEEEECCCc-------EEEcCEEEEeecC
Confidence 8888888888 899999999998643 33556554443 7999999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 299 ---~pn~~ 303 (499)
T PLN02507 299 ---APNTK 303 (499)
T ss_pred ---CCCCC
Confidence 46654
No 220
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=7.2e-06 Score=86.47 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=76.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHH
Confidence 3789999999999999999999999999999876441 01 12567778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++... ....+.. ++ +..++.+|.||+|+|.
T Consensus 217 l~~~L~~~GI--~i~~~~~V~~i~~~~----------------------~~v~~~~-~g-----~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 217 LREKLENDGV--KIFTGAALKGLNSYK----------------------KQALFEY-EG-----SIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHCCC--EEEECCEEEEEEEcC----------------------CEEEEEE-CC-----ceEEEEeCEEEEecCC
Confidence 8888888888 899999999997643 2233321 22 1236899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 267 ---~p~~~ 271 (458)
T PRK06912 267 ---KPRVQ 271 (458)
T ss_pred ---ccCCC
Confidence 46654
No 221
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.34 E-value=5e-06 Score=90.44 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=35.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
+++||+|||+|.|||+||.++++.|.+|+|+||....+|.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 3579999999999999999999999999999998766553
No 222
>PRK07208 hypothetical protein; Provisional
Probab=98.33 E-value=1.1e-06 Score=93.28 Aligned_cols=43 Identities=35% Similarity=0.561 Sum_probs=40.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
..+||+|||||++||+||..|.++|++|+|+|+++.+||.+..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 3489999999999999999999999999999999999998764
No 223
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.33 E-value=7.7e-06 Score=84.92 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CC-ceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN-GF-KPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~-g~-~v~v~e~~~ 63 (523)
..+||+|||||..|+++|++|.++ |. +|+|+|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 348999999999999999999995 85 899999975
No 224
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.33 E-value=6.4e-06 Score=86.99 Aligned_cols=101 Identities=20% Similarity=0.323 Sum_probs=79.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .. ...++..+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 223 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PG--EDADAAEV 223 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CC--CCHHHHHH
Confidence 3689999999999999999999999999999876541 11 12456778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .+.++++|.+++... +...|.+.++. ++.+|.||+|+|.
T Consensus 224 l~~~L~~~gV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~g~-------~l~~D~vl~a~G~ 272 (466)
T PRK07845 224 LEEVFARRGM--TVLKRSRAESVERTG----------------------DGVVVTLTDGR-------TVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHHCCc--EEEcCCEEEEEEEeC----------------------CEEEEEECCCc-------EEEecEEEEeecC
Confidence 8888888888 899999999998643 34556655543 7899999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 273 ---~pn~~ 277 (466)
T PRK07845 273 ---VPNTA 277 (466)
T ss_pred ---CcCCC
Confidence 46654
No 225
>PRK07846 mycothione reductase; Reviewed
Probab=98.33 E-value=5.9e-06 Score=86.80 Aligned_cols=101 Identities=13% Similarity=0.222 Sum_probs=74.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. .. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 4789999999999999999999999999999976441 00 11445566
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+.. +.++ .++++++|.+++... +...|++.+++ ++.+|.||+|+|.
T Consensus 213 l~~l~-~~~v--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g~-------~i~~D~vl~a~G~ 260 (451)
T PRK07846 213 FTELA-SKRW--DVRLGRNVVGVSQDG----------------------SGVTLRLDDGS-------TVEADVLLVATGR 260 (451)
T ss_pred HHHHH-hcCe--EEEeCCEEEEEEEcC----------------------CEEEEEECCCc-------EeecCEEEEEECC
Confidence 65544 3456 788999999998643 33556655443 7999999999995
Q ss_pred cCCCCCCCC
Q 009897 190 YSDLPNTPD 198 (523)
Q Consensus 190 ~s~~p~~p~ 198 (523)
.|+...
T Consensus 261 ---~pn~~~ 266 (451)
T PRK07846 261 ---VPNGDL 266 (451)
T ss_pred ---ccCccc
Confidence 466543
No 226
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.32 E-value=8.4e-06 Score=88.78 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
+.||+|||+|.|||+||.++++.|.+|+|+||....+|
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 47999999999999999999999999999999876554
No 227
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.32 E-value=9.4e-06 Score=85.69 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~ 64 (523)
.||+|||||+.|+++|+.|++. |.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 4899999999999999999996 899999999653
No 228
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=6.1e-06 Score=89.57 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=34.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
++||+|||+|.+||+||.++++.|.+|+|+||....+|
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 47999999999999999999999999999999865544
No 229
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.31 E-value=5.9e-06 Score=89.80 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGI 65 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~ 65 (523)
++.||+|||+|.|||+||.++++. |.+|+|+||....
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 357999999999999999999998 9999999997643
No 230
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.31 E-value=7.7e-06 Score=85.85 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=77.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+..|..|.+.|.+|+++++.+.+. ..+ ..++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHHH
Confidence 3689999999999999999999999999999865441 111 2566778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++... +...+...++ ++.+|.||+|+|.
T Consensus 205 l~~~l~~~gV--~v~~~~~v~~i~~~~----------------------~~v~v~~~~g--------~i~~D~vl~a~G~ 252 (441)
T PRK08010 205 IATILRDQGV--DIILNAHVERISHHE----------------------NQVQVHSEHA--------QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEEcCC--------eEEeCEEEEeecC
Confidence 8888888888 899999999998653 3344543322 5889999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 253 ---~pn~~ 257 (441)
T PRK08010 253 ---QPATA 257 (441)
T ss_pred ---CcCCC
Confidence 46653
No 231
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.31 E-value=1.1e-05 Score=86.85 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=38.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
.++||+|||+| +|++||..+++.|.+|+|+|+.+.+||+...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 56999999999 8999999999999999999999889986543
No 232
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.30 E-value=5.7e-06 Score=86.94 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=74.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++|+|||||+.|+.+|..|.+.|.+|+++++.+.+. + ..+ .+++.+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------~----~~~--~~~~~~~l 197 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL--------------------------P----DSF--DKEITDVM 197 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC--------------------------c----hhc--CHHHHHHH
Confidence 689999999999999999999999999999865431 0 011 26788888
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+..++.++ .++++++|.+++... +...+.++ +. ++.+|.||+|+|..
T Consensus 198 ~~~l~~~gI--~v~~~~~v~~i~~~~----------------------~~~~v~~~-~~-------~i~~d~vi~a~G~~ 245 (444)
T PRK09564 198 EEELRENGV--ELHLNEFVKSLIGED----------------------KVEGVVTD-KG-------EYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHCCC--EEEcCCEEEEEecCC----------------------cEEEEEeC-CC-------EEEcCEEEECcCCC
Confidence 888999998 899999999996432 22334333 22 68999999999954
No 233
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.30 E-value=6.4e-06 Score=86.09 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=76.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++|+|||+|++|+.+|..|++.|.+|+++++.+.+. ... ...++.+++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~------------------------------~~~--~~~~~~~~~ 185 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL------------------------------NKL--FDEEMNQIV 185 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC------------------------------ccc--cCHHHHHHH
Confidence 689999999999999999999999999999865431 001 125677788
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+..++.++ .+.++++|.+++... .. +.+.+++ ++.+|.||+|+|..
T Consensus 186 ~~~l~~~gV--~v~~~~~v~~i~~~~-----------------------~~-v~~~~g~-------~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 186 EEELKKHEI--NLRLNEEVDSIEGEE-----------------------RV-KVFTSGG-------VYQADMVILATGIK 232 (427)
T ss_pred HHHHHHcCC--EEEeCCEEEEEecCC-----------------------CE-EEEcCCC-------EEEeCEEEECCCcc
Confidence 888888898 899999999997543 22 4444444 79999999999954
Q ss_pred CCCCCCC
Q 009897 191 SDLPNTP 197 (523)
Q Consensus 191 s~~p~~p 197 (523)
|+.+
T Consensus 233 ---p~~~ 236 (427)
T TIGR03385 233 ---PNSE 236 (427)
T ss_pred ---CCHH
Confidence 5543
No 234
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.29 E-value=1.1e-05 Score=87.26 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=37.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
+++||+|||+|++|++||..++++|.+|+|+||....||.
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 4689999999999999999999999999999999888764
No 235
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.29 E-value=9.7e-06 Score=84.42 Aligned_cols=34 Identities=24% Similarity=0.562 Sum_probs=31.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI 65 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 65 (523)
||+|||||.+|+++|.+|++.|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 7999999999999999999999999999997544
No 236
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.28 E-value=9.8e-07 Score=93.44 Aligned_cols=52 Identities=25% Similarity=0.440 Sum_probs=43.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc-ccCccccc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ-TIESTKLQ 79 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~-~~~~~~~~ 79 (523)
|+.+||+|||||+.||+||..|+++|++|+|+||++.+||..+. .+.+.+.+
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd 53 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFD 53 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEec
Confidence 34589999999999999999999999999999999999996665 33344433
No 237
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.28 E-value=1.6e-05 Score=86.15 Aligned_cols=43 Identities=35% Similarity=0.540 Sum_probs=38.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccc
Q 009897 27 PKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVW 69 (523)
Q Consensus 27 ~~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w 69 (523)
..+++||+|||+|++|+++|..+.+.|.+|+|+|+.+.+||..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTT 51 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccc
Confidence 4467899999999999999999999999999999988777753
No 238
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.28 E-value=5.1e-06 Score=87.05 Aligned_cols=96 Identities=18% Similarity=0.305 Sum_probs=75.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . -.+++.+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------------------~--~d~~~~~~l 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-------------------------------L--MDADMNQPI 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-------------------------------h--cCHHHHHHH
Confidence 6899999999999999999999999999998764410 0 124677778
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+..++.++ .++++++|.+++.. .|++.+++ ++.+|.|++|+|..
T Consensus 196 ~~~l~~~gI--~i~~~~~v~~i~~~--------------------------~v~~~~g~-------~~~~D~vl~a~G~~ 240 (438)
T PRK13512 196 LDELDKREI--PYRLNEEIDAINGN--------------------------EVTFKSGK-------VEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHhcCC--EEEECCeEEEEeCC--------------------------EEEECCCC-------EEEeCEEEECcCCC
Confidence 888888888 89999999988631 35555554 78999999999954
Q ss_pred CCCCCCC
Q 009897 191 SDLPNTP 197 (523)
Q Consensus 191 s~~p~~p 197 (523)
|+..
T Consensus 241 ---pn~~ 244 (438)
T PRK13512 241 ---PNSK 244 (438)
T ss_pred ---cChH
Confidence 6644
No 239
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.27 E-value=9.5e-06 Score=85.32 Aligned_cols=100 Identities=14% Similarity=0.243 Sum_probs=74.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. .. ..+++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-------------------------------RH--LDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------------------------------cc--cCHHHHHH
Confidence 4789999999999999999999999999999875441 00 11445556
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..+ .++ .++++++|.+++... +...|++.++. ++.+|.|++|+|.
T Consensus 216 l~~~~~-~gI--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g~-------~i~~D~vl~a~G~ 263 (452)
T TIGR03452 216 FTEIAK-KKW--DIRLGRNVTAVEQDG----------------------DGVTLTLDDGS-------TVTADVLLVATGR 263 (452)
T ss_pred HHHHHh-cCC--EEEeCCEEEEEEEcC----------------------CeEEEEEcCCC-------EEEcCEEEEeecc
Confidence 655443 466 788999999998653 34556655443 7999999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 264 ---~pn~~ 268 (452)
T TIGR03452 264 ---VPNGD 268 (452)
T ss_pred ---CcCCC
Confidence 46654
No 240
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=6.4e-06 Score=89.27 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=34.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC---CceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENG---FKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g---~~v~v~e~~~~~GG 67 (523)
++.||+|||+|.|||+||.++++.| .+|+|+||....||
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 3479999999999999999999998 89999999876655
No 241
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.27 E-value=1.2e-05 Score=84.93 Aligned_cols=103 Identities=20% Similarity=0.328 Sum_probs=75.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++|+|||||+.|+.+|..|.+.|.+|+++|+.+.+. +. -.+++.+++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHHH
Confidence 789999999999999999999999999999976541 11 124566666
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+..++. + .+.++++|..++... +...+++.++. ++..++.+|.||+|+|.
T Consensus 222 ~~~l~~~-v--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~~---~~~~~i~~D~vi~a~G~- 272 (471)
T PRK06467 222 TKRIKKQ-F--NIMLETKVTAVEAKE----------------------DGIYVTMEGKK---APAEPQRYDAVLVAVGR- 272 (471)
T ss_pred HHHHhhc-e--EEEcCCEEEEEEEcC----------------------CEEEEEEEeCC---CcceEEEeCEEEEeecc-
Confidence 6666555 6 788999999998643 33556554432 11236999999999994
Q ss_pred CCCCCCC
Q 009897 191 SDLPNTP 197 (523)
Q Consensus 191 s~~p~~p 197 (523)
.|+..
T Consensus 273 --~pn~~ 277 (471)
T PRK06467 273 --VPNGK 277 (471)
T ss_pred --cccCC
Confidence 46664
No 242
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.26 E-value=8.2e-07 Score=69.36 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=30.6
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeecee
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHW 265 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~ 265 (523)
+|+|||+|.+|+|+|..+++.+.+ ||++.|++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchh
Confidence 699999999999999999998754 9999998863
No 243
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.26 E-value=1.3e-05 Score=83.66 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWS 70 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 70 (523)
++++||+|||||+.|+-+|..++.+|++|+++|+.+.-.|+-+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 3679999999999999999999999999999999887666543
No 244
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.26 E-value=1.2e-05 Score=85.05 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=77.0
Q ss_pred CCcEEEECCChHHHHHHHHHHH---CCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLE---NGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKV 106 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (523)
.++|+|||||+.|+.+|..+.. .|.+|+|+++.+.+. +. -.+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RG--FDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------cc--cCHHH
Confidence 4789999999999999976654 489999999876541 11 12567
Q ss_pred HHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEe
Q 009897 107 MEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILC 186 (523)
Q Consensus 107 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlA 186 (523)
.+.+.+..++.++ .+++++.|.+++... ++...|.+.++. ++.+|.||+|
T Consensus 234 ~~~l~~~L~~~GI--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g~-------~i~~D~vl~a 283 (486)
T TIGR01423 234 RKELTKQLRANGI--NIMTNENPAKVTLNA---------------------DGSKHVTFESGK-------TLDVDVVMMA 283 (486)
T ss_pred HHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------------CceEEEEEcCCC-------EEEcCEEEEe
Confidence 7888888888888 899999999998653 123455554443 7999999999
Q ss_pred eeecCCCCCCC
Q 009897 187 IGRYSDLPNTP 197 (523)
Q Consensus 187 tG~~s~~p~~p 197 (523)
+|. .|+..
T Consensus 284 ~G~---~Pn~~ 291 (486)
T TIGR01423 284 IGR---VPRTQ 291 (486)
T ss_pred eCC---CcCcc
Confidence 994 46654
No 245
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.25 E-value=1.9e-05 Score=85.45 Aligned_cols=40 Identities=25% Similarity=0.484 Sum_probs=36.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
.+.||+|||+|.+||+||..++++|.+|+|+|+.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 4589999999999999999999999999999999887774
No 246
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.25 E-value=1.2e-05 Score=88.14 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=34.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG 66 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 66 (523)
++.||+|||+|.+||+||.++++.|.+|+|+|+....+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 45899999999999999999999999999999876544
No 247
>PRK12839 hypothetical protein; Provisional
Probab=98.25 E-value=2.4e-05 Score=84.35 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=38.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWS 70 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 70 (523)
.+.||+|||+|.+|+++|..+.+.|.+|+|+|+...+||...
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 458999999999999999999999999999999988887644
No 248
>PTZ00367 squalene epoxidase; Provisional
Probab=98.25 E-value=6.6e-06 Score=88.18 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 56899999999999999999999999999999875
No 249
>PRK14727 putative mercuric reductase; Provisional
Probab=98.25 E-value=1.2e-05 Score=85.34 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=76.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++...+ . ...+++.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------~--~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------F--REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------C--cchHHHHHH
Confidence 378999999999999999999999999999874211 0 012467778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|..++... +.+.+...++ ++.+|.||+|+|.
T Consensus 234 l~~~L~~~GV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~g--------~i~aD~VlvA~G~ 281 (479)
T PRK14727 234 LTACFEKEGI--EVLNNTQASLVEHDD----------------------NGFVLTTGHG--------ELRAEKLLISTGR 281 (479)
T ss_pred HHHHHHhCCC--EEEcCcEEEEEEEeC----------------------CEEEEEEcCC--------eEEeCEEEEccCC
Confidence 8888888888 899999999998653 3455554332 6889999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
. |+..
T Consensus 282 ~---pn~~ 286 (479)
T PRK14727 282 H---ANTH 286 (479)
T ss_pred C---CCcc
Confidence 4 6654
No 250
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.24 E-value=1.4e-05 Score=84.10 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIG 66 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~G 66 (523)
.+||+|||||++|+++|..|++. +.+|+|+|+.+.+|
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 36999999999999999999997 89999999944443
No 251
>PLN02815 L-aspartate oxidase
Probab=98.24 E-value=1.3e-05 Score=86.46 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.+.||+|||+|.+||+||.++++.| +|+|+|+....||
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 4589999999999999999999999 9999999887665
No 252
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=1.3e-05 Score=86.78 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
+.||+|||+|.+||+||.++++. .+|+|+||....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 47999999999999999999986 89999999765444
No 253
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.22 E-value=2.3e-05 Score=84.99 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
..||+|||+|.|||+||.++++.|.+|+|+|+....||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 36999999999999999999999999999998776543
No 254
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.21 E-value=6.2e-06 Score=81.88 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI 65 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 65 (523)
+.+|+|||||.+|+++|..|.+.|++|+|+|++.++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999997765
No 255
>PRK14694 putative mercuric reductase; Provisional
Probab=98.21 E-value=1.6e-05 Score=84.13 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=74.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|++.|.+|+++++...+ . ...+++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------~--~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------------------------------S--QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------C--CCCHHHHHH
Confidence 378999999999999999999999999999863211 0 012456777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+++..++.++ .++++++|.+++... +.+.+.+.+ . ++.+|.||+|+|.
T Consensus 224 l~~~l~~~GI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~-~-------~i~~D~vi~a~G~ 271 (468)
T PRK14694 224 IEAAFRREGI--EVLKQTQASEVDYNG----------------------REFILETNA-G-------TLRAEQLLVATGR 271 (468)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEECC-C-------EEEeCEEEEccCC
Confidence 8888888888 899999999998643 334444322 2 6999999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
. |+..
T Consensus 272 ~---pn~~ 276 (468)
T PRK14694 272 T---PNTE 276 (468)
T ss_pred C---CCcC
Confidence 4 6654
No 256
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.19 E-value=1.8e-05 Score=84.46 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
+.||+|||+|.|||+||.++.+ |.+|+|+|+.+..||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 5799999999999999999976 8999999998866654
No 257
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.19 E-value=1.9e-05 Score=86.06 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.+||+|||||+.|.++|+.|+++|++|+|+|+.+..+|
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 38999999999999999999999999999999754333
No 258
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.18 E-value=1.2e-05 Score=90.13 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=77.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. + .. -.+...+.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll--------------------------~----~~--ld~~~~~~l 188 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM--------------------------A----KQ--LDQTAGRLL 188 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh--------------------------h----hh--cCHHHHHHH
Confidence 689999999999999999999999999999865431 0 00 124556777
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+..+..++ .+++++.|+++.... ....|++.+++ ++.+|.||+|+|..
T Consensus 189 ~~~l~~~GV--~v~~~~~v~~i~~~~----------------------~~~~v~~~dG~-------~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 189 QRELEQKGL--TFLLEKDTVEIVGAT----------------------KADRIRFKDGS-------SLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHcCC--EEEeCCceEEEEcCC----------------------ceEEEEECCCC-------EEEcCEEEECCCCC
Confidence 777888898 899999998887532 23456666665 89999999999954
Q ss_pred CCCCCCC
Q 009897 191 SDLPNTP 197 (523)
Q Consensus 191 s~~p~~p 197 (523)
|+..
T Consensus 238 ---Pn~~ 241 (785)
T TIGR02374 238 ---PNDE 241 (785)
T ss_pred ---cCcH
Confidence 6543
No 259
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.18 E-value=2.1e-05 Score=80.99 Aligned_cols=39 Identities=38% Similarity=0.561 Sum_probs=35.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG 66 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 66 (523)
++.+||+|||||++|+++|++|.+.|.+|+++|+....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 466899999999999999999999999999999876443
No 260
>PRK13748 putative mercuric reductase; Provisional
Probab=98.17 E-value=1.6e-05 Score=86.18 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++...+ .. ...++.+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------FR--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------cc--cCHHHHHH
Confidence 478999999999999999999999999999974211 00 12567778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .++++++|.+++..+ +.+.+.+.++ ++.+|.||+|+|.
T Consensus 316 l~~~l~~~gI--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~--------~i~~D~vi~a~G~ 363 (561)
T PRK13748 316 VTAAFRAEGI--EVLEHTQASQVAHVD----------------------GEFVLTTGHG--------ELRADKLLVATGR 363 (561)
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEecC----------------------CEEEEEecCC--------eEEeCEEEEccCC
Confidence 8888888888 899999999998643 3345544322 6899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 364 ---~pn~~ 368 (561)
T PRK13748 364 ---APNTR 368 (561)
T ss_pred ---CcCCC
Confidence 46654
No 261
>PTZ00058 glutathione reductase; Provisional
Probab=98.17 E-value=2.1e-05 Score=84.33 Aligned_cols=103 Identities=21% Similarity=0.403 Sum_probs=77.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||+.|+..|..|.+.|.+|+++++.+.+. +.+ .+++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RKF--DETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------ccC--CHHHHHH
Confidence 4789999999999999999999999999999876441 111 2566777
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .+.+++.|.+++... .+...+...++. .++.+|.|++|+|.
T Consensus 284 l~~~L~~~GV--~i~~~~~V~~I~~~~---------------------~~~v~v~~~~~~------~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 284 LENDMKKNNI--NIITHANVEEIEKVK---------------------EKNLTIYLSDGR------KYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEecC---------------------CCcEEEEECCCC------EEEECCEEEECcCC
Confidence 8888888888 899999999998653 123444433221 26899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 335 ---~Pn~~ 339 (561)
T PTZ00058 335 ---SPNTE 339 (561)
T ss_pred ---CCCcc
Confidence 46654
No 262
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.16 E-value=4.4e-06 Score=93.30 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=59.8
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCC---Ccc---cccccCccccc------------CCcCcee--eC
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGI---GGV---WSQTIESTKLQ------------TPKSFYQ--FS 88 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~---GG~---w~~~~~~~~~~------------~~~~~~~--~~ 88 (523)
.+|+||||||+||++|..|.+. |++|+|+|+++.. |.. +......+... .....+. +.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 3799999999999999999998 8999999998753 321 11100000000 0000000 11
Q ss_pred CCCCCCCCCC-CCCChhHHHHHHHHHHHHhCCCCceEeccEEEE
Q 009897 89 DFAWPNSVTE-TFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTS 131 (523)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~ 131 (523)
+......... ....+.++.+.|.+.+.+.++ .++++++|++
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~ 122 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGV--KLVFETEVPD 122 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCc
Confidence 0000000001 124678999999999999888 8899887754
No 263
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.16 E-value=2.6e-05 Score=82.99 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=76.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++. .+ ... -..++.++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~-------------------------------l~~--~d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IP-------------------------------LRG--FDRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cc-------------------------------ccc--CCHHHHHH
Confidence 368999999999999999999999999999873 22 011 12456778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .+.+++.|..++... +...|.+.+++ ++.+|.||+|+|.
T Consensus 228 l~~~l~~~GV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~g~-------~i~~D~vl~a~G~ 276 (499)
T PTZ00052 228 VVEYMKEQGT--LFLEGVVPINIEKMD----------------------DKIKVLFSDGT-------TELFDTVLYATGR 276 (499)
T ss_pred HHHHHHHcCC--EEEcCCeEEEEEEcC----------------------CeEEEEECCCC-------EEEcCEEEEeeCC
Confidence 8888888888 899999998888643 23456655554 6899999999994
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
.|+..
T Consensus 277 ---~pn~~ 281 (499)
T PTZ00052 277 ---KPDIK 281 (499)
T ss_pred ---CCCcc
Confidence 46654
No 264
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.16 E-value=3.1e-05 Score=83.49 Aligned_cols=40 Identities=23% Similarity=0.581 Sum_probs=37.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
+++||+|||+|.+|+++|..+++.|.+|+|+|+....||.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 4689999999999999999999999999999998877775
No 265
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.15 E-value=2.7e-05 Score=82.47 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=76.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++++|||||+.|+.+|..|++.|.+|+++++. .+ .+. -..++.+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~-------------------------------l~~--~d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL-------------------------------LRG--FDQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc-------------------------------ccc--cCHHHHHHH
Confidence 68999999999999999999999999999873 22 011 125677888
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+..++.++ .+++++.+..+...+ +...|++.++. ...++.+|.||+|+|.
T Consensus 227 ~~~L~~~gV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~~~----~~~~i~~D~vl~a~G~- 277 (484)
T TIGR01438 227 GEHMEEHGV--KFKRQFVPIKVEQIE----------------------AKVKVTFTDST----NGIEEEYDTVLLAIGR- 277 (484)
T ss_pred HHHHHHcCC--EEEeCceEEEEEEcC----------------------CeEEEEEecCC----cceEEEeCEEEEEecC-
Confidence 888888898 899999998888653 23445554432 1126899999999994
Q ss_pred CCCCCCC
Q 009897 191 SDLPNTP 197 (523)
Q Consensus 191 s~~p~~p 197 (523)
.|+..
T Consensus 278 --~pn~~ 282 (484)
T TIGR01438 278 --DACTR 282 (484)
T ss_pred --CcCCC
Confidence 46654
No 266
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.15 E-value=2.3e-05 Score=84.79 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=34.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG 67 (523)
+++||+|||+|.|||+||.++++. |.+|+|+||....||
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 457999999999999999999987 479999999876655
No 267
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.15 E-value=1.6e-05 Score=89.21 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=78.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++++|||||+.|+.+|..|++.|.+|+|+|+.+.+. ... -.++..+.+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------~~~-ld~~~~~~l 193 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------AEQ-LDQMGGEQL 193 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------------------------hhh-cCHHHHHHH
Confidence 689999999999999999999999999999865431 000 125667788
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
++..++.++ .+++++.|.++.... ......|.+.+++ .+.+|.||+|+|..
T Consensus 194 ~~~L~~~GV--~v~~~~~v~~I~~~~--------------------~~~~~~v~~~dG~-------~i~~D~Vv~A~G~r 244 (847)
T PRK14989 194 RRKIESMGV--RVHTSKNTLEIVQEG--------------------VEARKTMRFADGS-------ELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHCCC--EEEcCCeEEEEEecC--------------------CCceEEEEECCCC-------EEEcCEEEECCCcc
Confidence 888888898 899999999997642 0123456666665 79999999999954
Q ss_pred CCCCCC
Q 009897 191 SDLPNT 196 (523)
Q Consensus 191 s~~p~~ 196 (523)
|+.
T Consensus 245 ---Pn~ 247 (847)
T PRK14989 245 ---PQD 247 (847)
T ss_pred ---cCc
Confidence 554
No 268
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.14 E-value=2.6e-05 Score=82.43 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGI 65 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~ 65 (523)
.+||+|||||+.|+++|++|.+. |.+|+|+||...+
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 47999999999999999999984 7899999997654
No 269
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.13 E-value=4.5e-05 Score=81.53 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=34.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.+.||+|||+| +|++||.++++.|.+|+|+|+.+..||
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 46899999999 999999999999999999999887654
No 270
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.13 E-value=2.1e-05 Score=81.55 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=78.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++++|||+|+.|+.+|..|+++|++|+++|+.+.+++... . +++.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~------------------------------~--~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL------------------------------D--PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh------------------------------h--HHHHHH
Confidence 47999999999999999999999999999999877643211 1 677888
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeE---EEEeecccCCcceeEEEeCEEEEe
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWN---VTVQEARNVSSATEAYQVDFVILC 186 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~d~vVlA 186 (523)
+.+..+.+++ .+++++.+..++... +... +...++. .+.+|.++++
T Consensus 184 ~~~~l~~~gi--~~~~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~-------~~~~d~~~~~ 232 (415)
T COG0446 184 LAELLEKYGV--ELLLGTKVVGVEGKG----------------------NTLVVERVVGIDGE-------EIKADLVIIG 232 (415)
T ss_pred HHHHHHHCCc--EEEeCCceEEEEccc----------------------CcceeeEEEEeCCc-------EEEeeEEEEe
Confidence 8888999887 789999999999764 1111 3444443 7999999999
Q ss_pred eeec
Q 009897 187 IGRY 190 (523)
Q Consensus 187 tG~~ 190 (523)
+|..
T Consensus 233 ~g~~ 236 (415)
T COG0446 233 PGER 236 (415)
T ss_pred eccc
Confidence 9954
No 271
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.13 E-value=1.1e-05 Score=77.84 Aligned_cols=39 Identities=41% Similarity=0.589 Sum_probs=35.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWS 70 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 70 (523)
.+|+|||+|++||+||..|.++ .+||+||.+..+||.-+
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 6899999999999999998875 89999999999998544
No 272
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.12 E-value=4.7e-05 Score=82.51 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=38.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
.++||+|||+|++|+++|..+.+.|.+|+|+|+...+||....
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 3589999999999999999999999999999999888886643
No 273
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=3e-05 Score=81.86 Aligned_cols=104 Identities=30% Similarity=0.376 Sum_probs=75.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-------------------------------L--EDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------------------c--hhHHHHHH
Confidence 47999999999999999999999999999999765410 0 12456677
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+++..++. + .++++++|.+++... .....++..++ +..++.+|.||+|+|.
T Consensus 216 ~~~~l~~~-I--~i~~~~~v~~i~~~~---------------------~~~v~~~~~~~-----~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 216 AQKILSKE-F--KIKLGAKVTSVEKSG---------------------DEKVEELEKGG-----KTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHhhc-c--EEEcCCEEEEEEEcC---------------------CceEEEEEcCC-----ceEEEEeCEEEEccCC
Confidence 77777766 7 899999999998653 11233332222 1237899999999994
Q ss_pred cCCCCCCCC
Q 009897 190 YSDLPNTPD 198 (523)
Q Consensus 190 ~s~~p~~p~ 198 (523)
.|+...
T Consensus 267 ---~p~~~~ 272 (460)
T PRK06292 267 ---RPNTDG 272 (460)
T ss_pred ---ccCCCC
Confidence 467653
No 274
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.12 E-value=2.8e-05 Score=78.76 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIG 66 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~G 66 (523)
.+||++||||+.|.+.+..|.+. ..+|.||||.+.++
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 47999999999999999999984 56899999988765
No 275
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.12 E-value=4e-05 Score=82.89 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG 67 (523)
++||+|||+|.|||+||..+++. |.+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999986 589999999876665
No 276
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.12 E-value=3.6e-05 Score=83.60 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=31.2
Q ss_pred EEEECCChHHHHHHHHHHHCCCceEEEccCCCCC
Q 009897 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG 66 (523)
Q Consensus 33 v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 66 (523)
|+|||+|.|||+||.++++.|.+|+|+||...++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 7999999999999999999999999999987443
No 277
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.10 E-value=2.5e-05 Score=83.87 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.++||+|||+|.||++||.++. .|.+|+|+||.+..||
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 4589999999999999999996 5999999999887665
No 278
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.09 E-value=3.4e-05 Score=83.18 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=36.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
+.||+|||+|++|++||..+++.|.+|+|+|+...+||.
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 589999999999999999999999999999998877763
No 279
>PLN02546 glutathione reductase
Probab=98.09 E-value=3.6e-05 Score=82.54 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=75.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||+.|+..|..|.+.|.+|+++++.+.+. .. -.+++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------RG--FDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------cc--cCHHHHHH
Confidence 4789999999999999999999999999999876541 11 12567778
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..++.++ .+++++.|.++.... ++...+...++. .+.+|.||+|+|.
T Consensus 299 l~~~L~~~GV--~i~~~~~v~~i~~~~---------------------~g~v~v~~~~g~-------~~~~D~Viva~G~ 348 (558)
T PLN02546 299 VAEQMSLRGI--EFHTEESPQAIIKSA---------------------DGSLSLKTNKGT-------VEGFSHVMFATGR 348 (558)
T ss_pred HHHHHHHCCc--EEEeCCEEEEEEEcC---------------------CCEEEEEECCeE-------EEecCEEEEeecc
Confidence 8888888888 899999999997643 133344333221 3458999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
. |+..
T Consensus 349 ~---Pnt~ 353 (558)
T PLN02546 349 K---PNTK 353 (558)
T ss_pred c---cCCC
Confidence 4 6654
No 280
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.08 E-value=4.6e-05 Score=81.88 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=34.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.++.||+|||+|.+||+||.++.+. .+|+|+||....||
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 3568999999999999999999886 89999999887666
No 281
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.08 E-value=6.4e-05 Score=87.67 Aligned_cols=39 Identities=23% Similarity=0.469 Sum_probs=36.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGV 68 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 68 (523)
+.||+|||+|.||++||.++++.|.+|+|+||.+..||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 489999999999999999999999999999999888875
No 282
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.07 E-value=3.5e-06 Score=88.67 Aligned_cols=41 Identities=34% Similarity=0.549 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG--FKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~ 71 (523)
++|+|||||+|||+||+.|.+.| ++|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 47999999999999999999987 899999999999997654
No 283
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.06 E-value=2.2e-05 Score=76.85 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
...||+|||||.+|-+.|+.|.+.|.+|.|+||+-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 34899999999999999999999999999999863
No 284
>PLN02268 probable polyamine oxidase
Probab=98.06 E-value=4.1e-06 Score=87.83 Aligned_cols=41 Identities=29% Similarity=0.575 Sum_probs=38.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
.+|+|||||.|||+||+.|.+.|++|+|+|+++.+||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 47999999999999999999999999999999999997654
No 285
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.06 E-value=3.2e-05 Score=80.70 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=72.6
Q ss_pred CcEEEECCChHHHHHHHHHHH--------------CCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLE--------------NGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSV 96 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~--------------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (523)
++|+|||||+.|+..|..|.+ .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 389999999999999999875 368899999876541
Q ss_pred CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCccee
Q 009897 97 TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATE 176 (523)
Q Consensus 97 ~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (523)
..+ .+++.+++++..++.++ .+.++++|.+++.. .|.+.+++
T Consensus 224 -~~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~~--------------------------~v~~~~g~------- 265 (424)
T PTZ00318 224 -GSF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLDK--------------------------EVVLKDGE------- 265 (424)
T ss_pred -ccC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeCC--------------------------EEEECCCC-------
Confidence 111 24677888888889998 89999999988642 25566664
Q ss_pred EEEeCEEEEeeeec
Q 009897 177 AYQVDFVILCIGRY 190 (523)
Q Consensus 177 ~~~~d~vVlAtG~~ 190 (523)
++.+|.||+|+|..
T Consensus 266 ~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 266 VIPTGLVVWSTGVG 279 (424)
T ss_pred EEEccEEEEccCCC
Confidence 89999999999955
No 286
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.05 E-value=2.9e-05 Score=74.24 Aligned_cols=136 Identities=21% Similarity=0.287 Sum_probs=85.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccc---cCcccc---------cCCcC----------------
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQT---IESTKL---------QTPKS---------------- 83 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~---~~~~~~---------~~~~~---------------- 83 (523)
.|+|||+|.+||+|+-.+...|-.|+++|+...+||.-... +.+..+ ++|.-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 49999999999999999999988899999999999965431 111100 00000
Q ss_pred ce----------------ee----------CC--CCCCCCCCCCCCChhHHHHHHHHHHHHhCCC----CceEeccEEEE
Q 009897 84 FY----------------QF----------SD--FAWPNSVTETFPDHNKVMEYLQAYAAHFNLF----PSIKFDTKVTS 131 (523)
Q Consensus 84 ~~----------------~~----------~~--~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~----~~i~~~~~V~~ 131 (523)
+| .| .+ .|.........|++-++...|....+++.-. -.|..+++|++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 00 00 00 1211112345566777777766665554321 15788999999
Q ss_pred EEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeecC
Q 009897 132 IDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRYS 191 (523)
Q Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~s 191 (523)
+.+.. ....-|...+.. ++...+.++.||+|||.++
T Consensus 171 il~n~---------------------gkVsgVeymd~s---gek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 171 ILRNN---------------------GKVSGVEYMDAS---GEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred eecCC---------------------CeEEEEEEEcCC---CCccceecCceEEecCCcC
Confidence 98643 233445554432 2334789999999999984
No 287
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.04 E-value=6.3e-06 Score=84.68 Aligned_cols=41 Identities=39% Similarity=0.618 Sum_probs=38.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG--FKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~ 71 (523)
++|+|||||++||+||+.|.+.+ .+++|||+++.+||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 46999999999999999999999 999999999999997664
No 288
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.02 E-value=7.6e-05 Score=81.30 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=76.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||+.|+..|..|.+.|.+|+++|+.+.+. .. -..++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------------~~--~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------------PL--LDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------cc--CCHHHHHH
Confidence 4689999999999999999999999999999976551 10 12456777
Q ss_pred HHHHH-HHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccC--Cc------ceeEEEe
Q 009897 110 LQAYA-AHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNV--SS------ATEAYQV 180 (523)
Q Consensus 110 l~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~------~~~~~~~ 180 (523)
+.+.. ++.++ .+++++.|.+++... ......|.+.+...+ ++ +.+++.+
T Consensus 359 l~~~ll~~~GV--~I~~~~~V~~I~~~~--------------------~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~a 416 (659)
T PTZ00153 359 FERVFLKSKPV--RVHLNTLIEYVRAGK--------------------GNQPVIIGHSERQTGESDGPKKNMNDIKETYV 416 (659)
T ss_pred HHHHHhhcCCc--EEEcCCEEEEEEecC--------------------CceEEEEEEeccccccccccccccccceEEEc
Confidence 76654 56778 899999999998653 001234443321100 01 1236899
Q ss_pred CEEEEeeeecCCCCCCCC
Q 009897 181 DFVILCIGRYSDLPNTPD 198 (523)
Q Consensus 181 d~vVlAtG~~s~~p~~p~ 198 (523)
|.||+|+|. .|+...
T Consensus 417 D~VlvAtGr---~Pnt~~ 431 (659)
T PTZ00153 417 DSCLVATGR---KPNTNN 431 (659)
T ss_pred CEEEEEECc---ccCCcc
Confidence 999999994 477653
No 289
>PRK07233 hypothetical protein; Provisional
Probab=98.02 E-value=5.5e-06 Score=86.68 Aligned_cols=40 Identities=40% Similarity=0.654 Sum_probs=37.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
+|+|||||++||+||+.|.++|++|+|+|+++.+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6999999999999999999999999999999999997654
No 290
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.01 E-value=5.9e-05 Score=78.95 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=30.4
Q ss_pred EECCChHHHHHHHHHHHCCCceEEEccCCC--CCcc
Q 009897 35 IIGAGVSGLLACKYTLENGFKPIVFEARSG--IGGV 68 (523)
Q Consensus 35 IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~--~GG~ 68 (523)
|||+|.+|++||.++++.|.+|+|+||.+. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 799999999999999999999999999874 4553
No 291
>PRK10262 thioredoxin reductase; Provisional
Probab=98.01 E-value=5.7e-05 Score=75.76 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=73.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+ .....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~-----------------------------------~~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF-----------------------------------RAEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc-----------------------------------CCCHHHHHH
Confidence 378999999999999999999999999999986432 011234455
Q ss_pred HHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeee
Q 009897 110 LQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGR 189 (523)
Q Consensus 110 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~ 189 (523)
+.+..+..++ .+.+++.|.+++... .+.-.|++.++.. .++..++.+|.||+|+|.
T Consensus 191 ~~~~l~~~gV--~i~~~~~v~~v~~~~---------------------~~~~~v~~~~~~~-~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 191 LMDKVENGNI--ILHTNRTLEEVTGDQ---------------------MGVTGVRLRDTQN-SDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHhhccCCCe--EEEeCCEEEEEEcCC---------------------ccEEEEEEEEcCC-CCeEEEEECCEEEEEeCC
Confidence 5655666677 788899999997642 1222355554321 112347999999999995
Q ss_pred cCCCCCCC
Q 009897 190 YSDLPNTP 197 (523)
Q Consensus 190 ~s~~p~~p 197 (523)
. |+..
T Consensus 247 ~---p~~~ 251 (321)
T PRK10262 247 S---PNTA 251 (321)
T ss_pred c---cChh
Confidence 4 5543
No 292
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=6e-06 Score=84.66 Aligned_cols=41 Identities=34% Similarity=0.614 Sum_probs=38.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
++|+|+|||.|||+||++|+++|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 58999999999999999999999999999999999996553
No 293
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.98 E-value=8.1e-06 Score=86.96 Aligned_cols=42 Identities=29% Similarity=0.570 Sum_probs=39.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
++||+|||||++||+||..|++.|++|+|+|+++.+||....
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t 42 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGT 42 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccce
Confidence 368999999999999999999999999999999999997654
No 294
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=1.9e-05 Score=75.62 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=56.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCc-ccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIES-TKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
+|++|||||.+|+..|..|.+.|.+|.|+|+++++||.+...... ..+.+-+ +.+ --...+.+.+.+|
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk---------YGp--HIFHT~~~~Vwdy 70 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK---------YGP--HIFHTDNKRVWDY 70 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee---------ccC--ceeecCchHHHHH
Confidence 689999999999999998889999999999999999999873332 2221111 000 0122355789999
Q ss_pred HHHHHHHhC
Q 009897 110 LQAYAAHFN 118 (523)
Q Consensus 110 l~~~~~~~~ 118 (523)
+..+.+-..
T Consensus 71 v~~F~e~~~ 79 (374)
T COG0562 71 VNQFTEFNP 79 (374)
T ss_pred Hhhhhhhhh
Confidence 998887443
No 295
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.93 E-value=2.8e-05 Score=81.50 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeC
Q 009897 102 DHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVD 181 (523)
Q Consensus 102 ~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d 181 (523)
.+..+.++|.+.+.+.|+ .+..+ +|+++.... + .....|++.++. ++.+|
T Consensus 152 DR~~fd~~L~~~A~~~Gv--~~~~g-~V~~v~~~~--~------------------g~i~~v~~~~g~-------~i~ad 201 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEERGV--EVIEG-TVVDVELDE--D------------------GRITAVRLDDGR-------TIEAD 201 (454)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEET--EEEEEE-T--T------------------SEEEEEEETTSE-------EEEES
T ss_pred eHHHHHHHHHHHHhcCCC--EEEeC-EEEEEEEcC--C------------------CCEEEEEECCCC-------EEEEe
Confidence 578999999999999998 56555 688887764 0 112345555554 89999
Q ss_pred EEEEeeeecC
Q 009897 182 FVILCIGRYS 191 (523)
Q Consensus 182 ~vVlAtG~~s 191 (523)
++|-|||..+
T Consensus 202 ~~IDASG~~s 211 (454)
T PF04820_consen 202 FFIDASGRRS 211 (454)
T ss_dssp EEEE-SGGG-
T ss_pred EEEECCCccc
Confidence 9999999764
No 296
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.93 E-value=9e-06 Score=85.90 Aligned_cols=41 Identities=32% Similarity=0.539 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN----GFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~~ 71 (523)
+||+|||||++||+||+.|.++ |++|+|+|+++.+||....
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 6899999999999999999998 9999999999999997664
No 297
>PLN02576 protoporphyrinogen oxidase
Probab=97.93 E-value=9.6e-06 Score=86.53 Aligned_cols=41 Identities=39% Similarity=0.622 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC-CCceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN-GFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~ 71 (523)
+||+|||||++||+||+.|.+. |++|+|+|+++.+||....
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 6899999999999999999999 9999999999999997654
No 298
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.93 E-value=6.3e-05 Score=80.32 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
.+.||+|||+|.+||+||.++. +.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3589999999999999999996 569999999875
No 299
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.93 E-value=8.9e-05 Score=84.42 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
+++||+|||+|.+||+||.++.+.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 558999999999999999999999999999999764
No 300
>PLN02676 polyamine oxidase
Probab=97.93 E-value=1.6e-05 Score=84.23 Aligned_cols=48 Identities=31% Similarity=0.510 Sum_probs=41.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCCCCCccccc-ccCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARSGIGGVWSQ-TIEST 76 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~-~~~~~ 76 (523)
..+||+|||||++||+||+.|.+.|. +|+|+|+++.+||.+.. .+++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~ 74 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV 74 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe
Confidence 45799999999999999999999998 69999999999998875 44443
No 301
>PLN02568 polyamine oxidase
Probab=97.92 E-value=1.2e-05 Score=85.85 Aligned_cols=42 Identities=36% Similarity=0.555 Sum_probs=38.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-----CceEEEccCCCCCccccc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENG-----FKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g-----~~v~v~e~~~~~GG~w~~ 71 (523)
.++|+|||||++||+||+.|.+.| ++|+|+|+++.+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 478999999999999999999887 899999999999998765
No 302
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.91 E-value=5.6e-05 Score=75.10 Aligned_cols=154 Identities=19% Similarity=0.110 Sum_probs=90.8
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEecCccC-CC-cchhh--HHHHHHHhcCCCch-hHHHHHhhh
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVPDYFL-WS-TFRSL--NRWTELIIHNPGEG-FFSWLLALS 302 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~-~~-~~~~~--~r~~~~~~~~~~~~-~~~~~~~~~ 302 (523)
..|+|||+|++|+=+|..+++.+. +|+++.+.+. +--+... .| -+.+. .-+.+++.+.|+.+ |++..++++
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPK-LGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCcc-ccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 469999999999999999998775 4999988764 1111111 11 11111 11556777777554 455555543
Q ss_pred hchHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecC-ceEEecCc----EEE
Q 009897 303 LSPLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSR-SFTFCKNG----LVI 377 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~-i~~~~~~~----v~l 377 (523)
. .+-+..+++.+-........-++-|.. .+-..+-+.+...+++.+|+++... |.+++.+. +.+
T Consensus 80 t---~~d~i~~~e~~Gi~~~e~~~Gr~Fp~s--------dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t 148 (408)
T COG2081 80 T---PEDFIDWVEGLGIALKEEDLGRMFPDS--------DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT 148 (408)
T ss_pred C---HHHHHHHHHhcCCeeEEccCceecCCc--------cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc
Confidence 2 222222333222211111111222210 0111234567788999999999886 88877652 666
Q ss_pred cCCceeeeccEEEEecCCCC
Q 009897 378 DGETTPLVTDIVIFATGYKS 397 (523)
Q Consensus 378 ~dG~~~~~~D~VI~ATG~~~ 397 (523)
.+|++ +.+|.+|+|||=..
T Consensus 149 ~~g~~-i~~d~lilAtGG~S 167 (408)
T COG2081 149 SSGET-VKCDSLILATGGKS 167 (408)
T ss_pred CCCCE-EEccEEEEecCCcC
Confidence 78887 99999999999554
No 303
>PLN02529 lysine-specific histone demethylase 1
Probab=97.90 E-value=1.1e-05 Score=88.41 Aligned_cols=43 Identities=40% Similarity=0.616 Sum_probs=39.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
..++|+|||||++||+||..|.+.|++|+|+|+++.+||....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 3489999999999999999999999999999999999987553
No 304
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.90 E-value=1.3e-05 Score=81.23 Aligned_cols=41 Identities=29% Similarity=0.440 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
+||+|||||++|+++|..|.+.|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 58999999999999999999999999999999999996543
No 305
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.89 E-value=1.2e-05 Score=81.19 Aligned_cols=41 Identities=49% Similarity=0.763 Sum_probs=37.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-ceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGF-KPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~ 71 (523)
.+|||||||.|||+||.+|.++|+ +++|+|..+++||.-+.
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 689999999999999999998876 79999999999998765
No 306
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.89 E-value=0.00011 Score=78.76 Aligned_cols=101 Identities=24% Similarity=0.203 Sum_probs=70.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||+.|+.+|..|++.+.+|+++++.+.+ .. ...
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l-----------------------------------~~----~~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL-----------------------------------KA----DKV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC-----------------------------------Ch----hHH
Confidence 379999999999999999999999999999975432 00 122
Q ss_pred HHHHHHH-hCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 110 LQAYAAH-FNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 110 l~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
+.+..+. .++ .+++++.|.++.... .....|++.++. +++.+++.+|.|++|+|
T Consensus 393 l~~~l~~~~gV--~i~~~~~v~~i~~~~---------------------~~v~~v~~~~~~--~~~~~~i~~D~vi~a~G 447 (515)
T TIGR03140 393 LQDKLKSLPNV--DILTSAQTTEIVGDG---------------------DKVTGIRYQDRN--SGEEKQLDLDGVFVQIG 447 (515)
T ss_pred HHHHHhcCCCC--EEEECCeeEEEEcCC---------------------CEEEEEEEEECC--CCcEEEEEcCEEEEEeC
Confidence 3333443 477 889999999887642 122235655542 12334789999999999
Q ss_pred ecCCCCCCC
Q 009897 189 RYSDLPNTP 197 (523)
Q Consensus 189 ~~s~~p~~p 197 (523)
. .|+..
T Consensus 448 ~---~Pn~~ 453 (515)
T TIGR03140 448 L---VPNTE 453 (515)
T ss_pred C---cCCch
Confidence 4 46654
No 307
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.85 E-value=1.5e-05 Score=85.25 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=36.9
Q ss_pred EEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 33 IAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 33 v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
|+|||||++||+||..|++.|++|+|+|+++.+||....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEE
Confidence 689999999999999999999999999999999997665
No 308
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.85 E-value=1.5e-05 Score=84.29 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=36.8
Q ss_pred CcEEEECCChHHHHHHHHHHHC------CCceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN------GFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~------g~~v~v~e~~~~~GG~w~~ 71 (523)
++|+|||||++||+||+.|.+. |++|+|+|+++.+||....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 5799999999999999999985 4799999999999997554
No 309
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.84 E-value=1.9e-05 Score=84.10 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=41.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc-ccCcccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ-TIESTKL 78 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~-~~~~~~~ 78 (523)
+||+|||||.+||++|..|++.|++|+|+|+++.+||.... ..++.+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~f 49 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRF 49 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEE
Confidence 58999999999999999999999999999999999997765 3344433
No 310
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.83 E-value=0.00015 Score=78.46 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHH----HCCCceEEEccCCC
Q 009897 32 KIAIIGAGVSGLLACKYTL----ENGFKPIVFEARSG 64 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~----~~g~~v~v~e~~~~ 64 (523)
||+|||+|.|||+||.+++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 311
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.82 E-value=0.00017 Score=71.26 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=65.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||+|++|+.+|..|++.+.+|+++++.+.+ ...+.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~-----------------------------------~~~~~---- 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF-----------------------------------RAEKI---- 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc-----------------------------------CcCHH----
Confidence 378999999999999999999999999999986422 00122
Q ss_pred HHHHHHHh-CCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 110 LQAYAAHF-NLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 110 l~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
+.+.+++. ++ .+.+++.|.++.... ....+++.+.. +++.+++.+|.||+|+|
T Consensus 182 ~~~~l~~~~gv--~~~~~~~v~~i~~~~----------------------~~~~v~~~~~~--~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 182 LLDRLRKNPNI--EFLWNSTVKEIVGDN----------------------KVEGVKIKNTV--TGEEEELKVDGVFIAIG 235 (300)
T ss_pred HHHHHHhCCCe--EEEeccEEEEEEccC----------------------cEEEEEEEecC--CCceEEEEccEEEEeeC
Confidence 22333444 67 788899999987542 22234443321 12234799999999999
Q ss_pred ec
Q 009897 189 RY 190 (523)
Q Consensus 189 ~~ 190 (523)
..
T Consensus 236 ~~ 237 (300)
T TIGR01292 236 HE 237 (300)
T ss_pred CC
Confidence 44
No 312
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.81 E-value=2.1e-05 Score=82.90 Aligned_cols=40 Identities=45% Similarity=0.787 Sum_probs=37.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
+|+|||||++||+||..|.+.|++|+|+|+++.+||....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999997653
No 313
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.80 E-value=0.00014 Score=73.14 Aligned_cols=138 Identities=19% Similarity=0.168 Sum_probs=68.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC--ceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCC------C---C
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGF--KPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNS------V---T 97 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~ 97 (523)
..++|+|||||.++..++..|.+++. +|+++-|+...--.-. .......-.|...-.|...|.... . .
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~-s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n 267 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD-SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN 267 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB-----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc-ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc
Confidence 44899999999999999999999864 7999988653300000 000001111111111111110000 0 0
Q ss_pred CCCCChhHHHH-HHHHHHHHh-CC-CCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcc
Q 009897 98 ETFPDHNKVME-YLQAYAAHF-NL-FPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSA 174 (523)
Q Consensus 98 ~~~~~~~~~~~-yl~~~~~~~-~l-~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (523)
..-.+.+.+.+ |-.-|.++. +- .-.++.+++|++++..+ +++|.+++++.. +++
T Consensus 268 y~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~---------------------~~~~~l~~~~~~--~~~ 324 (341)
T PF13434_consen 268 YGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG---------------------DGGVRLTLRHRQ--TGE 324 (341)
T ss_dssp SSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES----------------------SSEEEEEEETT--T--
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC---------------------CCEEEEEEEECC--CCC
Confidence 11112222211 111222222 11 11567789999999875 358999998864 445
Q ss_pred eeEEEeCEEEEeeeec
Q 009897 175 TEAYQVDFVILCIGRY 190 (523)
Q Consensus 175 ~~~~~~d~vVlAtG~~ 190 (523)
..++.+|.||+|||..
T Consensus 325 ~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 325 EETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEESEEEE---EE
T ss_pred eEEEecCEEEEcCCcc
Confidence 6689999999999963
No 314
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=7.1e-05 Score=76.90 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
+||+|||||.||+.||...++.|.++.++--+.+
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d 38 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD 38 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence 8999999999999999999999999888775543
No 315
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.79 E-value=2.8e-05 Score=78.45 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=41.5
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 26 GPKMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 26 ~~~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
.|+...||+|||||.+||++|.+|.+.|++|+|+|.++.+||....
T Consensus 3 ~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 3 LPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 3456689999999999999999999999999999999999997554
No 316
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.79 E-value=0.00015 Score=77.50 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGG 67 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 67 (523)
.++||+|||||.|||.||.++++.|.+|+|+|+....+|
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 458999999999999999999999999999999876543
No 317
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.75 E-value=0.00018 Score=63.94 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=27.8
Q ss_pred EEEcCCCCHHHHHHHHHHhc--CCccCEEEEEeece
Q 009897 231 TVIGFQKSAVDVAAEVANRN--GVRYPCTLLFKTVH 264 (523)
Q Consensus 231 ~VvG~G~sg~d~a~~l~~~~--~~~~~Vt~~~r~~~ 264 (523)
+|||+|.+|+-++..|.+.. ....+|+++.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999985 33366999988654
No 318
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.71 E-value=0.00028 Score=75.54 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEY 109 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 109 (523)
.++|+|||||.+|+.+|..|...+.+|+|+++.+.+. . ..+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~----~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A----DQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c----cHH
Confidence 3789999999999999999999999999999865330 0 123
Q ss_pred HHHHHHH-hCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 110 LQAYAAH-FNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 110 l~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
+.+.... .++ .+++++.|.++.... ...-.|++.+.. +++..++.+|.|++|+|
T Consensus 392 l~~~l~~~~gI--~i~~~~~v~~i~~~~---------------------g~v~~v~~~~~~--~g~~~~i~~D~v~~~~G 446 (517)
T PRK15317 392 LQDKLRSLPNV--TIITNAQTTEVTGDG---------------------DKVTGLTYKDRT--TGEEHHLELEGVFVQIG 446 (517)
T ss_pred HHHHHhcCCCc--EEEECcEEEEEEcCC---------------------CcEEEEEEEECC--CCcEEEEEcCEEEEeEC
Confidence 3333333 477 789999999998642 111235555433 22334799999999999
Q ss_pred ecCCCCCCC
Q 009897 189 RYSDLPNTP 197 (523)
Q Consensus 189 ~~s~~p~~p 197 (523)
.. |+..
T Consensus 447 ~~---p~~~ 452 (517)
T PRK15317 447 LV---PNTE 452 (517)
T ss_pred Cc---cCch
Confidence 54 5543
No 319
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.70 E-value=5.3e-05 Score=79.96 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=37.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHC----CCceEEEccCCCCCcccc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLEN----GFKPIVFEARSGIGGVWS 70 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~ 70 (523)
.++|+|||||++||+||..|.+. |.+|+|+|+.+.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 48999999999999999999995 689999999999999653
No 320
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.68 E-value=0.00033 Score=71.03 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=83.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
..|+++|+|..|+.+|..|...+.+|+++++.+.+ + +. .-...+.+.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------------------------~-----~~-lf~~~i~~~~ 261 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------------------------L-----PR-LFGPSIGQFY 261 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------------------------h-----hh-hhhHHHHHHH
Confidence 67999999999999999999999999999986533 1 11 2346788888
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
+.|.+..++ .+..++.+.+++... ....-.|.+.++. ++.+|.||+++|.
T Consensus 262 ~~y~e~kgV--k~~~~t~~s~l~~~~--------------------~Gev~~V~l~dg~-------~l~adlvv~GiG~- 311 (478)
T KOG1336|consen 262 EDYYENKGV--KFYLGTVVSSLEGNS--------------------DGEVSEVKLKDGK-------TLEADLVVVGIGI- 311 (478)
T ss_pred HHHHHhcCe--EEEEecceeecccCC--------------------CCcEEEEEeccCC-------EeccCeEEEeecc-
Confidence 888888888 899999998887654 1123556777776 8999999999995
Q ss_pred CCCCCCCCCC
Q 009897 191 SDLPNTPDFP 200 (523)
Q Consensus 191 s~~p~~p~~p 200 (523)
+|+++.+.
T Consensus 312 --~p~t~~~~ 319 (478)
T KOG1336|consen 312 --KPNTSFLE 319 (478)
T ss_pred --cccccccc
Confidence 57776543
No 321
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.64 E-value=0.00037 Score=71.17 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=67.5
Q ss_pred CCcEEEECCChHHHHHHHHHHH----CC--CceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCCh
Q 009897 30 ERKIAIIGAGVSGLLACKYTLE----NG--FKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDH 103 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~----~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (523)
.++|+|||+|++|+.+|..|.+ .| .+|+|+ ..+.+ ... ..
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~-------------------------------l~~--~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASL-------------------------------LPG--FP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcc-------------------------------ccc--CC
Confidence 3689999999999999999975 34 478888 33222 011 12
Q ss_pred hHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEE
Q 009897 104 NKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFV 183 (523)
Q Consensus 104 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~v 183 (523)
+.+...+.+..++.++ .+..+++|..++. + .|.+.++. ++.+|.|
T Consensus 191 ~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~------------------------~--~v~~~~g~-------~i~~D~v 235 (364)
T TIGR03169 191 AKVRRLVLRLLARRGI--EVHEGAPVTRGPD------------------------G--ALILADGR-------TLPADAI 235 (364)
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCeeEEEcC------------------------C--eEEeCCCC-------EEecCEE
Confidence 4566778888888898 8999999987752 1 35555554 8999999
Q ss_pred EEeeeec
Q 009897 184 ILCIGRY 190 (523)
Q Consensus 184 VlAtG~~ 190 (523)
|+|+|..
T Consensus 236 i~a~G~~ 242 (364)
T TIGR03169 236 LWATGAR 242 (364)
T ss_pred EEccCCC
Confidence 9999955
No 322
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.62 E-value=5.7e-05 Score=79.84 Aligned_cols=40 Identities=38% Similarity=0.606 Sum_probs=37.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
+|+|||||++||++|..|.+.|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999996543
No 323
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.59 E-value=7.8e-05 Score=76.06 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI 65 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 65 (523)
|.+||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 3479999999999999999999999999999986654
No 324
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.56 E-value=7.8e-05 Score=77.54 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=40.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
.+||+|||+|.+|+.+|..|.+.|.+|+++|+++..||.|..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 389999999999999999999999999999999999999885
No 325
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.56 E-value=0.0001 Score=81.36 Aligned_cols=43 Identities=35% Similarity=0.629 Sum_probs=39.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
..++|+|||||++||+||+.|.+.|++|+|+|+++.+||....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 3478999999999999999999999999999999999997554
No 326
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.54 E-value=0.0011 Score=67.02 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCE
Q 009897 103 HNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDF 182 (523)
Q Consensus 103 ~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 182 (523)
..++.+-++++.+.+|. .++|+++|+++.... .....|.++++. ++.+|+
T Consensus 172 l~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~~---------------------~~~~~v~~~~g~-------~i~~~~ 221 (486)
T COG2509 172 LPKVVKNIREYLESLGG--EIRFNTEVEDIEIED---------------------NEVLGVKLTKGE-------EIEADY 221 (486)
T ss_pred hHHHHHHHHHHHHhcCc--EEEeeeEEEEEEecC---------------------CceEEEEccCCc-------EEecCE
Confidence 35677788899999998 899999999999865 123566777775 899999
Q ss_pred EEEeeeec
Q 009897 183 VILCIGRY 190 (523)
Q Consensus 183 vVlAtG~~ 190 (523)
||+|.|+.
T Consensus 222 vvlA~Grs 229 (486)
T COG2509 222 VVLAPGRS 229 (486)
T ss_pred EEEccCcc
Confidence 99999986
No 327
>PLN02976 amine oxidase
Probab=97.54 E-value=0.00011 Score=84.12 Aligned_cols=43 Identities=42% Similarity=0.604 Sum_probs=40.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
..++|+|||||++|+++|..|.+.|++|+|||+++.+||.|..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3489999999999999999999999999999999999998765
No 328
>PLN02487 zeta-carotene desaturase
Probab=97.53 E-value=9.2e-05 Score=79.32 Aligned_cols=41 Identities=37% Similarity=0.582 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
++|+|||||++||++|..|.+.|++|+|+|+.+.+||.+..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s 116 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGS 116 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceee
Confidence 59999999999999999999999999999999999997653
No 329
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.51 E-value=0.0001 Score=73.38 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=37.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCc--eEEEccCCCCCccccc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFK--PIVFEARSGIGGVWSQ 71 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~--v~v~e~~~~~GG~w~~ 71 (523)
.+.++|+|+|||++||++|++|++.+.+ +++||.++++||-.+.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 3558999999999999999999998765 5669999999885443
No 330
>PLN02612 phytoene desaturase
Probab=97.50 E-value=0.00013 Score=78.71 Aligned_cols=42 Identities=43% Similarity=0.717 Sum_probs=38.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWS 70 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 70 (523)
..++|+|||||++||++|+.|.+.|++|+|+|+++.+||...
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 347899999999999999999999999999999999999654
No 331
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.44 E-value=0.00015 Score=78.21 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=36.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC--CCCcc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS--GIGGV 68 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--~~GG~ 68 (523)
++.||+|||+|.+||+||.++++.|.+|+|+|+.+ .+||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 45899999999999999999999999999999988 66774
No 332
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.43 E-value=0.0013 Score=66.78 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCc-eEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFK-PIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~ 63 (523)
.++|+|||+|+.|+.+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36899999999999999999999997 99998753
No 333
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.42 E-value=0.0017 Score=68.36 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4799999999999999999999999999999864
No 334
>PLN03000 amine oxidase
Probab=97.38 E-value=0.00019 Score=79.27 Aligned_cols=43 Identities=37% Similarity=0.570 Sum_probs=39.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
..++|+|||||++||++|..|.+.|++|+|+|+++.+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 3489999999999999999999999999999999999997654
No 335
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.37 E-value=0.0002 Score=76.13 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWS 70 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 70 (523)
+||+|||+||+|+.+|+.|.+.|++|+|||+....||.|-
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 5899999999999999999999999999999999998874
No 336
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.37 E-value=0.00021 Score=72.28 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=35.9
Q ss_pred cCcchhhhccC-CCEEEEecCceEEec-C----cEEEcCCceeeeccEEEEecCC
Q 009897 347 LPRNFYDRVQG-GGLSLMKSRSFTFCK-N----GLVIDGETTPLVTDIVIFATGY 395 (523)
Q Consensus 347 ~~~~~~~~~~~-g~v~v~~~~i~~~~~-~----~v~l~dG~~~~~~D~VI~ATG~ 395 (523)
++..+.+.+++ ++|+++.+.|+.+.. + +|++.+|.. +.+|.||+|||-
T Consensus 97 y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~-~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEE-IEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEE-EEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCE-EecCEEEEeccc
Confidence 34444556655 899999888887743 2 488999998 999999999998
No 337
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.36 E-value=0.0011 Score=71.52 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4789999999999999999999999999999864
No 338
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.32 E-value=0.0019 Score=68.19 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=49.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
.++|+|||+|..|+.+|..|.+.|. +|+++++.+.. ..+....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~---------------------------------~~~~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE---------------------------------EMPASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc---------------------------------cCCCCHH---
Confidence 4799999999999999999999998 89999885321 0111111
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeC
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRL 135 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~ 135 (523)
..+.+++.|+ .+.+++.+..+...
T Consensus 317 -~~~~~~~~GV--~i~~~~~v~~i~~~ 340 (457)
T PRK11749 317 -EVEHAKEEGV--EFEWLAAPVEILGD 340 (457)
T ss_pred -HHHHHHHCCC--EEEecCCcEEEEec
Confidence 1234566788 78999999888754
No 339
>PRK12831 putative oxidoreductase; Provisional
Probab=97.28 E-value=0.0079 Score=63.47 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4899999999999999999999999999998754
No 340
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.24 E-value=0.00044 Score=73.44 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
.++|+|||+|.+|+++|..|++.|++|+++|++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 368999999999999999999999999999975
No 341
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.23 E-value=0.00036 Score=71.73 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=32.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIG 66 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 66 (523)
.+|+|||||.+|+.+|..|++.|++|+|||+++.++
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999877654
No 342
>PLN02463 lycopene beta cyclase
Probab=97.21 E-value=0.00091 Score=69.91 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=36.7
Q ss_pred CcchhhhccCCCEEEEecCceEEecC----cEEEcCCceeeeccEEEEecCCCCC
Q 009897 348 PRNFYDRVQGGGLSLMKSRSFTFCKN----GLVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 348 ~~~~~~~~~~g~v~v~~~~i~~~~~~----~v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
...+.+.+.+.+++++...+.+++.+ .|++++|.+ +++|.||.|+|....
T Consensus 117 ~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~-i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 117 KSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVK-IQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCE-EEcCEEEECcCCCcC
Confidence 34455666666788876667766532 277889988 999999999998764
No 343
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.18 E-value=0.0021 Score=65.78 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
||+|||+|.+||++|..|.+. ++|+|+-|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999998 99999998754
No 344
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.18 E-value=0.00035 Score=73.44 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=31.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 225 INGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 225 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
..+++|+|||+|++|+.+|..|++... +.+|+++.+.|.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~ 62 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPT 62 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCC
Confidence 357899999999999999999987322 256999999864
No 345
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.18 E-value=0.0028 Score=60.14 Aligned_cols=38 Identities=32% Similarity=0.628 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC------CceEEEccCCCCCc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENG------FKPIVFEARSGIGG 67 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g------~~v~v~e~~~~~GG 67 (523)
.++|+|+|||+.|.++|+.|.+++ ..|+|||...-.||
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 389999999999999999999987 78999999776655
No 346
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.16 E-value=0.00082 Score=67.13 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=72.8
Q ss_pred CcEEEECCChHHHHHHHHHHHC--------------CCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN--------------GFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSV 96 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~--------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (523)
..++||||||.|...|.+|..- .++|+++|..+.+ ++|
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------------------L~m---- 270 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------------------LNM---- 270 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH------------------------HHH----
Confidence 4699999999999999999762 4689999987654 111
Q ss_pred CCCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCccee
Q 009897 97 TETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATE 176 (523)
Q Consensus 97 ~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (523)
-...+.+|.++...+.++ .++.++.|..|.... +++..+ +++.+
T Consensus 271 -----Fdkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~~~--------------------------I~~~~~---~g~~~ 314 (491)
T KOG2495|consen 271 -----FDKRLVEYAENQFVRDGI--DLDTGTMVKKVTEKT--------------------------IHAKTK---DGEIE 314 (491)
T ss_pred -----HHHHHHHHHHHHhhhccc--eeecccEEEeecCcE--------------------------EEEEcC---CCcee
Confidence 114555666666666677 788898998887643 333333 12345
Q ss_pred EEEeCEEEEeeeecCCCCCCCC
Q 009897 177 AYQVDFVILCIGRYSDLPNTPD 198 (523)
Q Consensus 177 ~~~~d~vVlAtG~~s~~p~~p~ 198 (523)
++.|--+|.|||.. .+|.+-+
T Consensus 315 ~iPYG~lVWatG~~-~rp~~k~ 335 (491)
T KOG2495|consen 315 EIPYGLLVWATGNG-PRPVIKD 335 (491)
T ss_pred eecceEEEecCCCC-Cchhhhh
Confidence 89999999999987 4665543
No 347
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.10 E-value=0.00041 Score=68.61 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=29.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-CceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENG-FKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~ 64 (523)
+|++|||+|++|..+|.+|.+.| .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999653
No 348
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0015 Score=66.09 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
..+||+|||||.||..||.+.++.|.+.+++-.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 3489999999999999999999999988887754
No 349
>PRK06847 hypothetical protein; Provisional
Probab=97.06 E-value=0.0024 Score=65.40 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 227 GKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 227 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.++|+|||+|.+|+-+|..|++.+. +|+++.|.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCC
Confidence 5689999999999999999999765 4999998765
No 350
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0018 Score=68.00 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=50.8
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeE
Q 009897 98 ETFPDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEA 177 (523)
Q Consensus 98 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (523)
+...+...+.+.|...|+.+|. .|..++.|++|.-.. ++.|-|.+.-| .
T Consensus 181 DG~~DP~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~---------------------~~~~gVeT~~G--------~ 229 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASALGA--LVIENCPVTGLHVET---------------------DKFGGVETPHG--------S 229 (856)
T ss_pred CcccCHHHHHHHHHHHHHhcCc--EEEecCCcceEEeec---------------------CCccceeccCc--------c
Confidence 3445667888899999999998 799999999998764 35677887776 6
Q ss_pred EEeCEEEEeeeec
Q 009897 178 YQVDFVILCIGRY 190 (523)
Q Consensus 178 ~~~d~vVlAtG~~ 190 (523)
+++.++|-|+|..
T Consensus 230 iet~~~VNaaGvW 242 (856)
T KOG2844|consen 230 IETECVVNAAGVW 242 (856)
T ss_pred eecceEEechhHH
Confidence 8999999999975
No 351
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.03 E-value=0.0016 Score=66.59 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=28.3
Q ss_pred ecCceEEecCcEEEcCCceeeeccEEEEecCCCC
Q 009897 364 KSRSFTFCKNGLVIDGETTPLVTDIVIFATGYKS 397 (523)
Q Consensus 364 ~~~i~~~~~~~v~l~dG~~~~~~D~VI~ATG~~~ 397 (523)
...+.++++++|+++||++ +.+|.||.|.|.++
T Consensus 106 ~~~V~~v~~~~v~l~dg~~-~~A~~VI~A~G~~s 138 (370)
T TIGR01789 106 GRKAVGLDADGVDLAPGTR-INARSVIDCRGFKP 138 (370)
T ss_pred cCEEEEEeCCEEEECCCCE-EEeeEEEECCCCCC
Confidence 3457888888899999998 99999999999765
No 352
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.00 E-value=0.0013 Score=67.52 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=37.3
Q ss_pred cchhhhccCCCEEEEecCceEEecCc----EEEcCCceeeeccEEEEecCCCCC
Q 009897 349 RNFYDRVQGGGLSLMKSRSFTFCKNG----LVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 349 ~~~~~~~~~g~v~v~~~~i~~~~~~~----v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
+.+.+.+.++++.++...|.+++.++ |+++||.+ +.++.||-|+|....
T Consensus 91 ~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~-i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 91 EFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRT-IRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCE-EEeeEEEECCCcccc
Confidence 34455556667777777788887654 58889998 999999999997653
No 353
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.96 E-value=0.013 Score=56.97 Aligned_cols=42 Identities=31% Similarity=0.521 Sum_probs=35.6
Q ss_pred CCcEEEECCChHHHHHHHHHHH----CCCceEEEccCCC---------CCccccc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLE----NGFKPIVFEARSG---------IGGVWSQ 71 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~----~g~~v~v~e~~~~---------~GG~w~~ 71 (523)
..+|+|||||-.|.+.|+-|.+ .|++|+|+|+++. +||.+..
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ 140 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ 140 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence 4799999999999999998876 4799999999764 6777653
No 354
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.95 E-value=0.0079 Score=63.70 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=29.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 63 (523)
.++|+|||+|..|+.+|..+++.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 4789999999999999999999886 688776543
No 355
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0011 Score=63.94 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
|++||+|||||.+|++++..|.++|.++.|+.+..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 67999999999999999999999999999998754
No 356
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.89 E-value=0.0028 Score=66.68 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3889999999999999999999999999998854
No 357
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.88 E-value=0.03 Score=61.76 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 63 (523)
..++|+|||+|..|+.+|..+++.|. +|+|+.+..
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 34899999999999999999999987 599998754
No 358
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.84 E-value=0.027 Score=63.25 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCc-eEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFK-PIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~ 63 (523)
.++|+|||||..|+-+|..+.+.|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999999997 99999854
No 359
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.84 E-value=0.036 Score=58.58 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 63 (523)
..++|+|||+|..|+.+|..+.+.|. +|+|+++.+
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 35899999999999999999999996 699999864
No 360
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.80 E-value=0.0019 Score=66.38 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=36.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWS 70 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 70 (523)
++||+|||||..|--+|.-..-+|+++.++|+.+.-.|+-+
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 38999999999999999999999999999999887666544
No 361
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.80 E-value=0.011 Score=59.10 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=35.7
Q ss_pred ceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 122 SIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 122 ~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+.-+++|.+++... +|.+.+.++... +++.+++..|.||+|||..
T Consensus 294 ~l~~~~ev~~~~~~G---------------------~g~~~l~~~~~~--~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 294 RLLSLSEVQSVEPAG---------------------DGRYRLTLRHHE--TGELETVETDAVILATGYR 339 (436)
T ss_pred eeccccceeeeecCC---------------------CceEEEEEeecc--CCCceEEEeeEEEEecccc
Confidence 345588899988865 355888887764 4566789999999999976
No 362
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.77 E-value=0.0013 Score=68.32 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 226 NGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 226 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.+++|+|||+|++|+.+|..++.... .+|+++.|.|.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 57899999999999999998765322 45999999875
No 363
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.71 E-value=0.048 Score=60.27 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 63 (523)
.++|+|||+|..|+-+|..+.+.|. +|+++.+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 4789999999999999999999997 699988754
No 364
>PRK02106 choline dehydrogenase; Validated
Probab=96.69 E-value=0.0019 Score=70.02 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHH-CCCceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLE-NGFKPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~ 63 (523)
++|+||||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 3799999999999999999999 799999999985
No 365
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.69 E-value=0.0027 Score=61.42 Aligned_cols=44 Identities=20% Similarity=0.469 Sum_probs=37.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC--CCCccccc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS--GIGGVWSQ 71 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--~~GG~w~~ 71 (523)
+...||+|||||.+||.||.+|++.|.+|+|+|+.. .+||+-..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfW 48 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFW 48 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeee
Confidence 346899999999999999999999999999999764 57876443
No 366
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.68 E-value=0.011 Score=68.40 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=66.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
.++|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 3789999999999999999999996 58899875322 11
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
.+.+..++.++ .++.++.|..+.... ..-.|++.... +...++.+|.|+++.|
T Consensus 356 ~l~~~L~~~GV--~i~~~~~v~~i~g~~----------------------~v~~V~l~~~~---g~~~~i~~D~V~va~G 408 (985)
T TIGR01372 356 EARAEARELGI--EVLTGHVVAATEGGK----------------------RVSGVAVARNG---GAGQRLEADALAVSGG 408 (985)
T ss_pred HHHHHHHHcCC--EEEcCCeEEEEecCC----------------------cEEEEEEEecC---CceEEEECCEEEEcCC
Confidence 23344566788 888999998887532 11234444210 1123789999999999
Q ss_pred ecCCCCCC
Q 009897 189 RYSDLPNT 196 (523)
Q Consensus 189 ~~s~~p~~ 196 (523)
. .|+.
T Consensus 409 ~---~Pnt 413 (985)
T TIGR01372 409 W---TPVV 413 (985)
T ss_pred c---Cchh
Confidence 4 4664
No 367
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.67 E-value=0.052 Score=62.09 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.++|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4899999999999999999999999999998753
No 368
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.64 E-value=0.01 Score=59.20 Aligned_cols=99 Identities=19% Similarity=0.359 Sum_probs=68.0
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCc-eEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhH
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN----GFK-PIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNK 105 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~----g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (523)
+.|.|||+|.-|-..|+.|.+. |.+ ..||+..... . ...| +-
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm---------------------------~----kiLP--ey 394 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM---------------------------E----KILP--EY 394 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh---------------------------h----hhhH--HH
Confidence 6899999999999999999873 444 3445442111 0 0000 12
Q ss_pred HHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEE
Q 009897 106 VMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVIL 185 (523)
Q Consensus 106 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVl 185 (523)
+.++-.+-.++-|+ .++-|..|.++.... +...+.+++|. ++..|.||+
T Consensus 395 ls~wt~ekir~~GV--~V~pna~v~sv~~~~----------------------~nl~lkL~dG~-------~l~tD~vVv 443 (659)
T KOG1346|consen 395 LSQWTIEKIRKGGV--DVRPNAKVESVRKCC----------------------KNLVLKLSDGS-------ELRTDLVVV 443 (659)
T ss_pred HHHHHHHHHHhcCc--eeccchhhhhhhhhc----------------------cceEEEecCCC-------eeeeeeEEE
Confidence 22333334556677 788899999988764 55778888887 899999999
Q ss_pred eeeecCCCCCC
Q 009897 186 CIGRYSDLPNT 196 (523)
Q Consensus 186 AtG~~s~~p~~ 196 (523)
|+|. .|+.
T Consensus 444 avG~---ePN~ 451 (659)
T KOG1346|consen 444 AVGE---EPNS 451 (659)
T ss_pred EecC---CCch
Confidence 9994 5665
No 369
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.0026 Score=65.01 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
++|+|||+|.||+.+|.+|.+.......|+++.+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 4799999999999999999997654233888877654
No 370
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.61 E-value=0.0042 Score=70.26 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=32.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 225 INGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 225 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
..+|+|+|||+|++|+.+|..|++.+. +|+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~---~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH---PVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecccc
Confidence 468999999999999999999999875 4999988654
No 371
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.54 E-value=0.0024 Score=64.30 Aligned_cols=44 Identities=36% Similarity=0.471 Sum_probs=39.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
..++|++|||+|..||++|..|.+.|.+|+|+|++..+||.-..
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavt 55 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVT 55 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceee
Confidence 45699999999999999999999999999999999888886554
No 372
>PLN02697 lycopene epsilon cyclase
Probab=96.52 E-value=0.0049 Score=65.65 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=35.4
Q ss_pred cCcchhhhccCCCEEEEecCceEEec--Cc---EEEcCCceeeeccEEEEecCCCC
Q 009897 347 LPRNFYDRVQGGGLSLMKSRSFTFCK--NG---LVIDGETTPLVTDIVIFATGYKS 397 (523)
Q Consensus 347 ~~~~~~~~~~~g~v~v~~~~i~~~~~--~~---v~l~dG~~~~~~D~VI~ATG~~~ 397 (523)
+.+.+.+.+.+.+++++...+..+.. ++ +++.+|.+ +.+|.||.|+|...
T Consensus 194 L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~-i~A~lVI~AdG~~S 248 (529)
T PLN02697 194 LHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRV-IPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcE-EECCEEEECCCcCh
Confidence 34455566666677777666776653 33 35578888 99999999999876
No 373
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.50 E-value=0.0018 Score=59.87 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=26.8
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
+|+|||+|.+|+.+|..|+..+. +|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 69999999999999999997664 488885543
No 374
>PRK05868 hypothetical protein; Validated
Probab=96.45 E-value=0.0097 Score=60.95 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
++|+|||+|..|.-+|..|++.+. +|+++.+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCC
Confidence 479999999999999999999775 4999999865
No 375
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.44 E-value=0.014 Score=62.73 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.4
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
.|+|||||.+|+++|..+++.+.. |.++.+.+
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~ 37 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAK---TLLLTHNL 37 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCc---EEEEeccc
Confidence 599999999999999999998754 99998864
No 376
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.44 E-value=0.096 Score=57.70 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 63 (523)
.++|+|||+|..|+-+|..+.+.|. +|+++.+++
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4899999999999999999999995 799998754
No 377
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.43 E-value=0.0074 Score=62.13 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=28.2
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|.+|.-+|..+++.+. +|+++.+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCC
Confidence 38999999999999999997654 5999998764
No 378
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.38 E-value=0.013 Score=57.12 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=77.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++++|+|||..++..|--+...|.++.+|=|.+.+ .+.| .+.+..
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv-------------------------------LR~F--D~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV-------------------------------LRGF--DEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh-------------------------------hcch--hHHHHH
Confidence 4489999999999999999999999999998886544 1222 145555
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
.+.+..+.-++ +++.++.++.+.+.. ++...+....+. ...+|.|+.|+|
T Consensus 235 ~v~~~~~~~gi--nvh~~s~~~~v~K~~---------------------~g~~~~i~~~~~-------i~~vd~llwAiG 284 (478)
T KOG0405|consen 235 LVTEHLEGRGI--NVHKNSSVTKVIKTD---------------------DGLELVITSHGT-------IEDVDTLLWAIG 284 (478)
T ss_pred HHHHHhhhcce--eecccccceeeeecC---------------------CCceEEEEeccc-------cccccEEEEEec
Confidence 66666666677 788889999988865 344555555443 456999999999
Q ss_pred ecCCCCCCCCC
Q 009897 189 RYSDLPNTPDF 199 (523)
Q Consensus 189 ~~s~~p~~p~~ 199 (523)
..|+...+
T Consensus 285 ---R~Pntk~L 292 (478)
T KOG0405|consen 285 ---RKPNTKGL 292 (478)
T ss_pred ---CCCCcccc
Confidence 45777654
No 379
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.37 E-value=0.00058 Score=70.34 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=32.2
Q ss_pred cCcchhhhccCCCEEEEecC-ceEEe--cCc---EEEcCCceeeeccEEEEecCCCCC
Q 009897 347 LPRNFYDRVQGGGLSLMKSR-SFTFC--KNG---LVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 347 ~~~~~~~~~~~g~v~v~~~~-i~~~~--~~~---v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
+-+.+...+++-+|+++.+. |..+. +++ |.++++.+ +.+|.||+|||-..-
T Consensus 111 Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~-~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 111 VVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGE-YEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEE-EEESEEEE----SSS
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCccc-ccCCEEEEecCCCCc
Confidence 33567777888899999886 77774 444 66656666 999999999998753
No 380
>PRK07236 hypothetical protein; Provisional
Probab=96.26 E-value=0.029 Score=57.71 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 226 NGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 226 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
...+|+|||+|.+|.-+|..|++.+.. |+++.|.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence 357899999999999999999998754 999999764
No 381
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.18 E-value=0.006 Score=62.56 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
+||+|||+|++|+++|..|.+.|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
No 382
>PRK07588 hypothetical protein; Provisional
Probab=96.18 E-value=0.021 Score=58.88 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=29.5
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
+|+|||+|.+|.-+|..|++.+. +|+++.|.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCC
Confidence 79999999999999999999875 4999998764
No 383
>PLN02785 Protein HOTHEAD
Probab=96.16 E-value=0.0067 Score=65.71 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
..+|++|||||.+|+.+|.+|.+ +.+|+|+|+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35999999999999999999999 689999999863
No 384
>PRK09897 hypothetical protein; Provisional
Probab=96.14 E-value=0.017 Score=61.56 Aligned_cols=36 Identities=6% Similarity=0.171 Sum_probs=29.7
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
++|+|||+|++|+-++..|++.... .+|+++.+++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~-l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTP-LSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCC-CcEEEEecCCC
Confidence 5899999999999999999886432 46999988653
No 385
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.07 E-value=0.014 Score=60.24 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 227 GKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 227 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
..+|+|||+|.+|.-+|..|++.+. +|+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcc
Confidence 4689999999999999999999875 4999999864
No 386
>PRK13984 putative oxidoreductase; Provisional
Probab=96.06 E-value=0.16 Score=55.70 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC------ceEEEc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF------KPIVFE 60 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~------~v~v~e 60 (523)
.++|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4799999999999999999998753 567763
No 387
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.04 E-value=0.0054 Score=66.02 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CceEEEccCCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENG-FKPIVFEARSG 64 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~ 64 (523)
|++|||||.+|+.+|.+|.+.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 79999999753
No 388
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.03 E-value=0.018 Score=56.53 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=28.8
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|.+|+-+|..|++.+. +|+++.|.+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCC
Confidence 48999999999999999998765 4999998754
No 389
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.01 E-value=0.0058 Score=58.85 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee-ceeEecC
Q 009897 227 GKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT-VHWMVPD 269 (523)
Q Consensus 227 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~-~~~~~p~ 269 (523)
.-+|+|||||.-|+-+|..+.+.-.. .+|-++... .++.-|.
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~-g~vgIvep~e~HyYQPg 81 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGS-GSVGIVEPAEDHYYQPG 81 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCC-CceEEecchhhcccCcc
Confidence 34799999999999999999987554 567777543 3444443
No 390
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.96 E-value=0.019 Score=59.21 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=37.4
Q ss_pred cCcchhhhccCCCEEEEecC-ceEEec--Cc--EEEcCCceeeeccEEEEecCCCCC
Q 009897 347 LPRNFYDRVQGGGLSLMKSR-SFTFCK--NG--LVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 347 ~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~--v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
+...+.+.+++.+++++.+. ++++.. ++ |++++|++ +.+|.||.|+|....
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~-~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRR-LEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCE-EEeCEEEEecCCCch
Confidence 34456666777788888764 666643 33 56678887 999999999999874
No 391
>PRK06753 hypothetical protein; Provisional
Probab=95.95 E-value=0.043 Score=56.12 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=29.8
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
+|+|||+|.+|.-+|..|++.+.. |+++.|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 699999999999999999998754 999999875
No 392
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.95 E-value=0.21 Score=54.17 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=29.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-CceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENG-FKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~ 63 (523)
..++|+|||+|..|+..|..+.+.+ .+|+|+.+.+
T Consensus 266 ~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 4589999999999999999999888 5688888753
No 393
>PRK09126 hypothetical protein; Provisional
Probab=95.95 E-value=0.044 Score=56.45 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
-+|+|||+|.+|+-+|..|++.+.. |+++.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCc
Confidence 3699999999999999999998754 999999764
No 394
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.92 E-value=0.0083 Score=64.45 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=33.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.+++|+||||+|.+|..+|..|.+.|.+|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 356899999999999999999999999999999874
No 395
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.024 Score=55.09 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=74.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
-+-+|||||..+|.+|--|.-.|++|+|.=|+--+ +.| .+++.+.+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L--------------------------------rGF--Dqdmae~v 244 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL--------------------------------RGF--DQDMAELV 244 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec--------------------------------ccc--cHHHHHHH
Confidence 57899999999999999999999999999875211 222 26788888
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
.+..+..|+ .+.-.+..+.|+..+ +++..|...+.. +++.-+..||.|++|.|.-
T Consensus 245 ~~~m~~~Gi--kf~~~~vp~~Veq~~---------------------~g~l~v~~k~t~--t~~~~~~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 245 AEHMEERGI--KFLRKTVPERVEQID---------------------DGKLRVFYKNTN--TGEEGEEEYDTVLWAIGRK 299 (503)
T ss_pred HHHHHHhCC--ceeecccceeeeecc---------------------CCcEEEEeeccc--ccccccchhhhhhhhhccc
Confidence 888888888 666666777787765 355666554432 2233367899999999944
No 396
>PRK06834 hypothetical protein; Provisional
Probab=95.77 E-value=0.049 Score=57.94 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
..|+|||+|++|+-+|..|++.+.. |+++.|.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 4799999999999999999998754 999999764
No 397
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.77 E-value=0.029 Score=60.18 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=27.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
.|+|||+|.+|+++|..++..+.. |.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 489999999999999999998754 99998864
No 398
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.72 E-value=0.02 Score=61.42 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=69.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHHHH
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVMEYL 110 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 110 (523)
++-+|||+|.-||.+|..|...|.+++|++-.+.+ +. .+...+ -.+.|
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--------------------------Me---rQLD~~---ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--------------------------ME---RQLDRT---AGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--------------------------HH---HhhhhH---HHHHH
Confidence 45799999999999999999999999999765432 11 111112 23445
Q ss_pred HHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeeeec
Q 009897 111 QAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIGRY 190 (523)
Q Consensus 111 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG~~ 190 (523)
+.-.++.++ .++++..++.+.... ..-.+.+.++. .+.+|.||.|+|..
T Consensus 194 ~~~le~~Gi--~~~l~~~t~ei~g~~----------------------~~~~vr~~DG~-------~i~ad~VV~a~GIr 242 (793)
T COG1251 194 RRKLEDLGI--KVLLEKNTEEIVGED----------------------KVEGVRFADGT-------EIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHhhcc--eeecccchhhhhcCc----------------------ceeeEeecCCC-------cccceeEEEecccc
Confidence 666677777 677766655544322 23457777776 89999999999964
Q ss_pred CCCCCC
Q 009897 191 SDLPNT 196 (523)
Q Consensus 191 s~~p~~ 196 (523)
|+.
T Consensus 243 ---Pn~ 245 (793)
T COG1251 243 ---PND 245 (793)
T ss_pred ---ccc
Confidence 664
No 399
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.71 E-value=0.094 Score=59.85 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CC-ceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN-GF-KPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~-g~-~v~v~e~~~ 63 (523)
..++|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 358999999999999999998885 86 799998854
No 400
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.71 E-value=0.093 Score=60.62 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=29.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCc-eEEEccC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFK-PIVFEAR 62 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~ 62 (523)
..++|+|||||..|+-+|..+.+.|.+ |+++.++
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 348999999999999999999999985 7777764
No 401
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.12 Score=51.12 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=67.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
..++|+|||+|-+++-.|..|.+-+-+|+++=|++.+ -..+.+.+
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-----------------------------------ra~~~~~~ 186 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-----------------------------------RAEEILVE 186 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc-----------------------------------CcCHHHHH
Confidence 3479999999999999999999999999999886543 11233333
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEeCEEEEeee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQVDFVILCIG 188 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~vVlAtG 188 (523)
.+.+. -++ .+.+++.+..+..+. .-.|.+++.. ++...+.+|.|.++.|
T Consensus 187 ~l~~~---~~i--~~~~~~~i~ei~G~~-----------------------v~~v~l~~~~---~~~~~~~~~gvf~~iG 235 (305)
T COG0492 187 RLKKN---VKI--EVLTNTVVKEILGDD-----------------------VEGVVLKNVK---GEEKELPVDGVFIAIG 235 (305)
T ss_pred HHHhc---CCe--EEEeCCceeEEecCc-----------------------cceEEEEecC---CceEEEEeceEEEecC
Confidence 33221 155 788899998888642 1235555532 2345899999999999
Q ss_pred ec
Q 009897 189 RY 190 (523)
Q Consensus 189 ~~ 190 (523)
+.
T Consensus 236 ~~ 237 (305)
T COG0492 236 HL 237 (305)
T ss_pred CC
Confidence 54
No 402
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.66 E-value=0.11 Score=55.14 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-ceEEEccCCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF-KPIVFEARSG 64 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~ 64 (523)
.++|+|||||..|+.+|..+++.|. +|+++|..+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4899999999999999999988875 6999987653
No 403
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.65 E-value=0.003 Score=57.15 Aligned_cols=41 Identities=32% Similarity=0.572 Sum_probs=34.8
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCCc-cccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIGG-VWSQ 71 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG-~w~~ 71 (523)
.||+|+|||-+||+||+.+.++ .++|.|+|.+-.+|| .|.-
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLG 120 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLG 120 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccccc
Confidence 6999999999999999999864 579999999877654 6653
No 404
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.62 E-value=0.052 Score=56.22 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=36.2
Q ss_pred cchhhhccCCCEEEEecC-ceEEec--Cc--EEEcCCceeeeccEEEEecCCCCC
Q 009897 349 RNFYDRVQGGGLSLMKSR-SFTFCK--NG--LVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 349 ~~~~~~~~~g~v~v~~~~-i~~~~~--~~--v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
+.+.+.+++.+++++.+. +.+++. ++ |.+++|++ +.+|.||.|.|....
T Consensus 116 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~-~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQ-LRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCE-EEeCEEEEecCCCch
Confidence 455566666678888774 666643 33 66788888 999999999998753
No 405
>PRK07045 putative monooxygenase; Reviewed
Probab=95.55 E-value=0.021 Score=58.80 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
-+|+|||+|++|.-+|..|++.+- +|+++.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~---~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGH---SVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCC---cEEEEeCCCc
Confidence 379999999999999999999875 4999999875
No 406
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.54 E-value=0.049 Score=51.25 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 230 VTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 230 V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
.+|||||..|+-+|..|+..... .+|.+++.++
T Consensus 2 fivvgggiagvscaeqla~~~ps-a~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPS-AEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCC-CcEEEEeccH
Confidence 58999999999999999998664 5677776654
No 407
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.53 E-value=0.034 Score=57.01 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=36.0
Q ss_pred cCcchhhhccC-CCEEEEecC-ceEEec--Cc--EEEcCCceeeeccEEEEecCCCC
Q 009897 347 LPRNFYDRVQG-GGLSLMKSR-SFTFCK--NG--LVIDGETTPLVTDIVIFATGYKS 397 (523)
Q Consensus 347 ~~~~~~~~~~~-g~v~v~~~~-i~~~~~--~~--v~l~dG~~~~~~D~VI~ATG~~~ 397 (523)
+...+.+.+.+ .+++++.+. ++++.. ++ |.+++|++ +.+|.||.|.|...
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~-~~ad~vV~AdG~~S 162 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQ-LRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCE-EEeeEEEEecCCCh
Confidence 34455566666 488888654 777643 33 66778887 99999999999875
No 408
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.019 Score=60.97 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=30.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 225 INGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 225 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
+.+++|+|||+|.+|+++|..|++.+.. |+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 4588999999999999999999887754 99987653
No 409
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.51 E-value=0.022 Score=52.97 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=29.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEe
Q 009897 225 INGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFK 261 (523)
Q Consensus 225 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r 261 (523)
+++++|+|||||.+|.--+..|.+.+.. ||++..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~---VtVvsp 40 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQ---LRVIAE 40 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCE---EEEEcC
Confidence 5699999999999999999999998765 988854
No 410
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.49 E-value=0.03 Score=57.60 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.+|+|||+|.+|.-+|..|++.+. +|+++.+.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCC
Confidence 469999999999999999998764 4999999764
No 411
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.44 E-value=0.041 Score=56.68 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=38.5
Q ss_pred cCcchhhhcc-CCCEEEEecC-ceEEecCc----EEEc-CCceeeeccEEEEecCCCC
Q 009897 347 LPRNFYDRVQ-GGGLSLMKSR-SFTFCKNG----LVID-GETTPLVTDIVIFATGYKS 397 (523)
Q Consensus 347 ~~~~~~~~~~-~g~v~v~~~~-i~~~~~~~----v~l~-dG~~~~~~D~VI~ATG~~~ 397 (523)
+...+++.+. .++|+++.+. ++.++.++ ++++ ||++ +++|.||-|-|...
T Consensus 106 l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~-~~a~llVgADG~~S 162 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET-LDADLLVGADGANS 162 (387)
T ss_pred HHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE-EecCEEEECCCCch
Confidence 4455667775 4669999875 77776443 7888 9997 99999999999775
No 412
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.43 E-value=0.042 Score=57.76 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=35.3
Q ss_pred ecCcchhhhccCCCEEEEecCceEE--ecCc----EEEcCCceeeeccEEEEecCCCCC
Q 009897 346 VLPRNFYDRVQGGGLSLMKSRSFTF--CKNG----LVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 346 ~~~~~~~~~~~~g~v~v~~~~i~~~--~~~~----v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
.+..-+.+...+.+|+++.+.|..+ ++++ |++++|.+ +++|.+|=|||++..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~-i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRT-IEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEE-EEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCE-EEEeEEEECCCccch
Confidence 3455566666667899998886544 3443 77889988 999999999999754
No 413
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.41 E-value=0.042 Score=56.82 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=37.4
Q ss_pred cCcchhhhccCCCEEEEecC-ceEEec--Cc--EEEcCCceeeeccEEEEecCCCCC
Q 009897 347 LPRNFYDRVQGGGLSLMKSR-SFTFCK--NG--LVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 347 ~~~~~~~~~~~g~v~v~~~~-i~~~~~--~~--v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
+...+.+.+++.+++++.+. ++.++. ++ |++++|++ +.+|.||.|+|....
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~-~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSV-LEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCE-EEeCEEEEcCCCChH
Confidence 44556676777778888665 666643 33 66778888 999999999998754
No 414
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.25 E-value=0.034 Score=57.20 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=29.4
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|.+|.-+|..|++.+. +|+++.|.+.
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~ 39 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGL---RVALLAPRAP 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCC
Confidence 69999999999999999998765 4999998765
No 415
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.24 E-value=0.12 Score=53.68 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=65.3
Q ss_pred EEECCChHHHHHH-HHHH----HCCCceEEEccCCCCCcccccccCcccccCCcCceeeCCCCCCCCCCCCCCChhHHHH
Q 009897 34 AIIGAGVSGLLAC-KYTL----ENGFKPIVFEARSGIGGVWSQTIESTKLQTPKSFYQFSDFAWPNSVTETFPDHNKVME 108 (523)
Q Consensus 34 ~IIGaG~aGl~aA-~~l~----~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (523)
+|++.|.-|+..+ ..+. +.|.+|++++..+.. .++.++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 6788899998887 3332 369999999875321 12346778
Q ss_pred HHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEE-EEeecccCCcceeEEEeCEEEEee
Q 009897 109 YLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNV-TVQEARNVSSATEAYQVDFVILCI 187 (523)
Q Consensus 109 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~d~vVlAt 187 (523)
.+.+..++.+. .+..+++|.+++..+ ++..+ ...++ +...+.+|.||+|+
T Consensus 264 aL~~~l~~~Gv--~I~~g~~V~~v~~~~----------------------~~V~~v~~~~g-----~~~~i~AD~VVLAt 314 (422)
T PRK05329 264 ALRRAFERLGG--RIMPGDEVLGAEFEG----------------------GRVTAVWTRNH-----GDIPLRARHFVLAT 314 (422)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEeC----------------------CEEEEEEeeCC-----ceEEEECCEEEEeC
Confidence 88888888888 899999999998754 22222 22222 23368999999999
Q ss_pred eec
Q 009897 188 GRY 190 (523)
Q Consensus 188 G~~ 190 (523)
|.+
T Consensus 315 Grf 317 (422)
T PRK05329 315 GSF 317 (422)
T ss_pred CCc
Confidence 965
No 416
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.019 Score=55.74 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI 65 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 65 (523)
+...|-|||||.+|-.||++++++|++|.++|-++.-
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 4567999999999999999999999999999987643
No 417
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.23 E-value=0.023 Score=50.45 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
+|+|||||..|.++|..|.++|.+|+++.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 5899999999999999999999999999885
No 418
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.18 E-value=0.055 Score=56.52 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=29.0
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|++|.-+|..|++.+. +|.++.|.+.
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~ 39 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGA---QVLVIERGNS 39 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCC
Confidence 69999999999999999999875 4999998753
No 419
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.16 E-value=0.017 Score=55.75 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCceEEEccCCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN--GFKPIVFEARSGIG 66 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~G 66 (523)
-.+|++|||||+.|++.|++|.-+ +.+|.|+|+...++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 348999999999999999998765 89999999987664
No 420
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.13 E-value=0.066 Score=55.06 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=28.7
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
+|+|||+|..|.-+|..|++.+- +|+++.+.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGR---SVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCC
Confidence 69999999999999999999775 499999865
No 421
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.13 E-value=0.085 Score=54.31 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
-.|+|||+|..|.-+|..|++.+. +|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCC
Confidence 479999999999999999998764 499999875
No 422
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.08 E-value=0.031 Score=62.79 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 225 INGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 225 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
..+|+|+|||+|+.|+.+|..|+..+. +||++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH---NVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC---eEEEEcccc
Confidence 469999999999999999999999765 499998753
No 423
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.07 E-value=0.05 Score=55.77 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=29.2
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|.+|.=+|..|++.+.+ |+++.|.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCc
Confidence 389999999999999999998754 999999864
No 424
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.054 Score=53.69 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhchH
Q 009897 227 GKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLSPL 306 (523)
Q Consensus 227 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (523)
-.+|.|||+|++|+=.|..|.+.-.. ..|+++.+.|. ++|
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~-~~Vdi~Ek~Pv-------PFG-------------------------------- 59 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPN-AHVDIFEKLPV-------PFG-------------------------------- 59 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCC-CeeEeeecCCc-------ccc--------------------------------
Confidence 34999999999999999999985221 45999998775 222
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecCceEEecCcEEEcCCceeeec
Q 009897 307 LWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSRSFTFCKNGLVIDGETTPLVT 386 (523)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~i~~~~~~~v~l~dG~~~~~~ 386 (523)
..++++.|+||-. ..+-..|-+..+..+..+..+. .+ ++-|.|.+= + -.+
T Consensus 60 -----------------LvRyGVAPDHpEv--------KnvintFt~~aE~~rfsf~gNv--~v-G~dvsl~eL-~-~~y 109 (468)
T KOG1800|consen 60 -----------------LVRYGVAPDHPEV--------KNVINTFTKTAEHERFSFFGNV--KV-GRDVSLKEL-T-DNY 109 (468)
T ss_pred -----------------eeeeccCCCCcch--------hhHHHHHHHHhhccceEEEecc--ee-cccccHHHH-h-hcc
Confidence 4567788887741 2233344555666666655432 01 111222221 2 468
Q ss_pred cEEEEecCCCCCc
Q 009897 387 DIVIFATGYKSDE 399 (523)
Q Consensus 387 D~VI~ATG~~~~~ 399 (523)
|+||+|+|-.-+.
T Consensus 110 davvLaYGa~~dR 122 (468)
T KOG1800|consen 110 DAVVLAYGADGDR 122 (468)
T ss_pred cEEEEEecCCCCc
Confidence 9999999987654
No 425
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.93 E-value=0.06 Score=56.00 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=29.5
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
+|+|||+|.+|+-+|..|++.+. -+|+++.|.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~--~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSH--LNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC--CCEEEEecCCc
Confidence 79999999999999999998763 14999999865
No 426
>PRK06184 hypothetical protein; Provisional
Probab=94.90 E-value=0.093 Score=56.09 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
-.|+|||+|++|.-+|..|++.+.. |+++.|.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 4699999999999999999998754 999999764
No 427
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.13 Score=53.88 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 227 GKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 227 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
-.+|+|||+|.||+-+|..|.+.+.. . +.++.+..
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~-~-~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVP-D-FVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCC-c-EEEEEccC
Confidence 45799999999999999999998863 2 88888874
No 428
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.85 E-value=0.026 Score=58.43 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=27.1
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 231 TVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 231 ~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
+|||+|.+|+=+|..+++.+. +|+++.|.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~---~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGL---SVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCC---cEEEEecCcc
Confidence 599999999999999999764 4999998765
No 429
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.83 E-value=0.073 Score=57.00 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
.|+|+|||+|.+|.-.|.+|.+...+|++.-|+
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 489999999999999999999988899888775
No 430
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.82 E-value=0.065 Score=54.60 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=26.3
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
.|+|||||..|+|.|.+.++.|.. .++++.+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGAR---TLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCc---eEEeecc
Confidence 699999999999999999998865 6676654
No 431
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.74 E-value=0.071 Score=55.15 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
++|+|||+|.+|.-+|..|++.+. +|+++.|.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 689999999999999999998765 4999999764
No 432
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.69 E-value=0.18 Score=52.59 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 226 NGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 226 ~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
..++|+|||+|.||.-.|..|.+.+. +|+++.|++.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCC
Confidence 36899999999999999999999875 4999999853
No 433
>PRK11445 putative oxidoreductase; Provisional
Probab=94.66 E-value=0.1 Score=53.04 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=28.1
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|++|.-+|..|++. . +|+++.|.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCc
Confidence 599999999999999999886 4 4999999864
No 434
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.61 E-value=0.099 Score=54.92 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=29.7
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
-.|+|||+|+.|.-+|..|++.+.. |.++.|.+.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE---TFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 4799999999999999999998754 999998753
No 435
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=94.61 E-value=0.11 Score=53.83 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
.+|+|||+|..|.-+|..|++.+. +|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~---~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDL---RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCC---EEEEEcCC
Confidence 479999999999999999998764 49999985
No 436
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.59 E-value=0.042 Score=51.90 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
++++|||+|..|...|..|.+.|.+|+++|+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999864
No 437
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.59 E-value=0.078 Score=49.14 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=29.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEe
Q 009897 225 INGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFK 261 (523)
Q Consensus 225 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r 261 (523)
.++++|+|||+|..|.-.+..|.+.+.. |+++.+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~---V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAH---IVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEcC
Confidence 5799999999999999999999997754 988864
No 438
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.51 E-value=0.1 Score=53.71 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=28.1
Q ss_pred CEEEEEcCCCCHHHHHHHHHHh---cCCccCEEEEEee
Q 009897 228 KRVTVIGFQKSAVDVAAEVANR---NGVRYPCTLLFKT 262 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~---~~~~~~Vt~~~r~ 262 (523)
-+|+|||+|.+|.-+|..|++. +. +|+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~---~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGL---PVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCC---EEEEEeCC
Confidence 3699999999999999999987 54 49999995
No 439
>PRK08013 oxidoreductase; Provisional
Probab=94.50 E-value=0.078 Score=54.88 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
..|+|||+|.+|.-+|..|++.+. +|+++.|.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCC
Confidence 469999999999999999999775 4999999875
No 440
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.48 E-value=0.058 Score=50.14 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
.++|+|||||..|...+..|++.|.+|+|+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 378999999999999999999999999999864
No 441
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.45 E-value=0.12 Score=53.66 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.+|+|||+|.+|.-+|..|++.+.. |+++.|.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 4799999999999999999998754 999999875
No 442
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.34 E-value=0.085 Score=54.57 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=29.1
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
+|+|||+|++|.-+|..+++.+.. |.++.|.+.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ---TFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 699999999999999999998754 999998753
No 443
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.32 E-value=0.044 Score=50.01 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=27.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
++|+|||.|..||.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998754
No 444
>PRK07190 hypothetical protein; Provisional
Probab=94.31 E-value=0.16 Score=54.00 Aligned_cols=34 Identities=15% Similarity=-0.058 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
-.|+|||+|++|.=+|..|++.+.. |.++.|.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCc
Confidence 3699999999999999999987754 999999764
No 445
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.28 E-value=0.04 Score=56.96 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 40 VSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 40 ~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
.|||+||..|++.|++|+|||+++.+||....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t 32 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRT 32 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-E
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEE
Confidence 58999999999999999999999999998775
No 446
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.24 E-value=0.037 Score=45.24 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
.++|+|||+|..|..-+..|++.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 478999999999999999999999999999886
No 447
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=94.19 E-value=0.13 Score=52.88 Aligned_cols=31 Identities=29% Similarity=0.235 Sum_probs=27.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
.|+|||+|++|.-+|..|++.+. +|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI---ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 59999999999999999998865 49999987
No 448
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.13 E-value=0.055 Score=57.09 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCCCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARSGI 65 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 65 (523)
+|+|||.|++|+++|+.|.+.|++|+++|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987643
No 449
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.11 E-value=0.34 Score=51.22 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=28.3
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
+.|+|||+|.+|+-.|..+++.+.. |.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~---V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFD---VTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 4699999999999999999987654 99998853
No 450
>PRK08244 hypothetical protein; Provisional
Probab=94.10 E-value=0.14 Score=54.53 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=29.6
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|++|.-+|..|++.+.. |+++.|.+.
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~ 36 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVK---TCVIERLKE 36 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 599999999999999999998754 999999764
No 451
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.06 E-value=0.07 Score=48.53 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
+|+|||||..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999864
No 452
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.06 E-value=0.065 Score=55.49 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=35.2
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCceEEEccCCCCCcccc
Q 009897 31 RKIAIIGAGVSGLLACKYTLEN----GFKPIVFEARSGIGGVWS 70 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~ 70 (523)
+++=|||+|.|+|+||..|.+. |-+|+|+|+.+..||...
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 5678999999999999999995 569999999999888654
No 453
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.00 E-value=0.36 Score=46.62 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 227 GKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 227 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.-.|+|||+|++|.-+|..+++.+. +|.++.+.+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCC
Confidence 4579999999999999999998764 4999998754
No 454
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.99 E-value=0.071 Score=55.48 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
-.|+|||+|..|+|.|...++.+.+ +.+++-.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~ 36 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAK---TLLLTLN 36 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCe---EEEEEcC
Confidence 3699999999999999999998864 7777654
No 455
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.98 E-value=0.19 Score=51.16 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCCCC---ChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCc
Q 009897 97 TETFP---DHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSS 173 (523)
Q Consensus 97 ~~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 173 (523)
.+.|| ...+|.+-|...+++.++ .|+++++|.+|+ . ++|.|.+..+.
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~--~----------------------~~~~v~~~~~~---- 125 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQ--G----------------------GTLRFETPDGQ---- 125 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEe--C----------------------CcEEEEECCCc----
Confidence 35566 578899999999999999 899999999992 1 34888775332
Q ss_pred ceeEEEeCEEEEeeeec
Q 009897 174 ATEAYQVDFVILCIGRY 190 (523)
Q Consensus 174 ~~~~~~~d~vVlAtG~~ 190 (523)
..+.+|+||+|||..
T Consensus 126 --~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 126 --STIEADAVVLALGGA 140 (376)
T ss_pred --eEEecCEEEEcCCCc
Confidence 168999999999986
No 456
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.97 E-value=0.059 Score=49.72 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=29.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
..++|+|||+|.+++.+|..|.+.|.+|+++-|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 34899999999999999999999999999998865
No 457
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.90 E-value=0.12 Score=48.44 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=0.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeeceeEecCccCCCcchhhHHHHHHHhcCCCchhHHHHHhhhhc
Q 009897 225 INGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVHWMVPDYFLWSTFRSLNRWTELIIHNPGEGFFSWLLALSLS 304 (523)
Q Consensus 225 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 304 (523)
.++++|+|||||..|..=+..|.+.+.. ||++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~---VtVVap~------------------------------------------ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCY---VYILSKK------------------------------------------ 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEcCC------------------------------------------
Q ss_pred hHHHHHHHHHHHHHHhcCCcccCCCCCCCcccccccCcceeecCcchhhhccCCCEEEEecCceEEecCcEEEcCCceee
Q 009897 305 PLLWLSSKVVESCLKWTFPLKKYNMIPGHSFLNQISSCMFTVLPRNFYDRVQGGGLSLMKSRSFTFCKNGLVIDGETTPL 384 (523)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~i~~~~~~~v~l~dG~~~~ 384 (523)
+++++.+....++|+++... +..+.. .
T Consensus 58 ------------------------------------------i~~el~~l~~~~~i~~~~r~----------~~~~dl-~ 84 (223)
T PRK05562 58 ------------------------------------------FSKEFLDLKKYGNLKLIKGN----------YDKEFI-K 84 (223)
T ss_pred ------------------------------------------CCHHHHHHHhCCCEEEEeCC----------CChHHh-C
Q ss_pred eccEEEEecC
Q 009897 385 VTDIVIFATG 394 (523)
Q Consensus 385 ~~D~VI~ATG 394 (523)
.++.||.||+
T Consensus 85 g~~LViaATd 94 (223)
T PRK05562 85 DKHLIVIATD 94 (223)
T ss_pred CCcEEEECCC
No 458
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.87 E-value=0.1 Score=44.95 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCc-eEEEccC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFK-PIVFEAR 62 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~ 62 (523)
.++|+|||+|-+|-++++.|.+.|.+ ++|+.|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 47899999999999999999999997 9999885
No 459
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.86 E-value=0.08 Score=53.11 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC----CCceEEEccC--CCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN----GFKPIVFEAR--SGIG 66 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~--~~~G 66 (523)
..+||+|+||||.|++.|..|... ..++.++|.. +.++
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~ 78 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG 78 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence 358999999999999999999974 3589999977 4443
No 460
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.84 E-value=0.09 Score=46.61 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEcc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEA 61 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~ 61 (523)
.++|+|||||..|..-|..|++.|.+|+|+++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 48899999999999999999999999999964
No 461
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.68 E-value=0.21 Score=51.17 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=28.3
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
+|+|||+|.+|.-+|..|++.+- +|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGI---KTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence 59999999999999999998775 499999864
No 462
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.54 E-value=0.094 Score=55.19 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.++|+|||+|..|+++|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4889999999999999999999999999999864
No 463
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=93.51 E-value=0.099 Score=54.14 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=34.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
++||+|+|.|..-...|..|.+.|.+|+.+|+++.-||.|..
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 489999999999999999999999999999999999999986
No 464
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.51 E-value=0.11 Score=51.37 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 789999999999999999999999999999853
No 465
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=93.48 E-value=0.26 Score=50.64 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHHHhCCCCceEeccEEEEEEeCCCCCcccccccccCCCCCCCCCCCCeEEEEeecccCCcceeEEEe
Q 009897 101 PDHNKVMEYLQAYAAHFNLFPSIKFDTKVTSIDRLVPSDEDEHSWDLWGGTGKPFSSSGKWNVTVQEARNVSSATEAYQV 180 (523)
Q Consensus 101 ~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 180 (523)
.+...+...|.+.+.+ +. .+.++++|.+++... +.|.|++.++. .+.+
T Consensus 132 idp~~~~~~l~~~~~~-G~--~i~~~~~V~~i~~~~----------------------~~~~v~t~~g~-------~~~a 179 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RL--TLHFNTEITSLERDG----------------------EGWQLLDANGE-------VIAA 179 (381)
T ss_pred cChHHHHHHHHhccCC-Cc--EEEeCCEEEEEEEcC----------------------CeEEEEeCCCC-------EEEc
Confidence 3445666666666666 76 789999999998754 45888877664 6899
Q ss_pred CEEEEeeeecC
Q 009897 181 DFVILCIGRYS 191 (523)
Q Consensus 181 d~vVlAtG~~s 191 (523)
|+||+|+|..+
T Consensus 180 ~~vV~a~G~~~ 190 (381)
T TIGR03197 180 SVVVLANGAQA 190 (381)
T ss_pred CEEEEcCCccc
Confidence 99999999874
No 466
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.44 E-value=0.06 Score=56.26 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=32.8
Q ss_pred hcCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 224 LINGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 224 ~~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
...+++|+|||+|+.|..+|..|+..+.. ||++.|.+.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~ 157 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVAL 157 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCC
Confidence 35689999999999999999999998865 999887653
No 467
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.43 E-value=0.11 Score=48.08 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEcc
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEA 61 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~ 61 (523)
.++|+|||||-.|...|..|++.|.+|+|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 47899999999999999999999999999976
No 468
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=93.41 E-value=0.32 Score=46.30 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=28.0
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEee
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKT 262 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~ 262 (523)
.|+|||+|..|.-+|..|...+. +||++.++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGR---EVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCc---EEEEEEcC
Confidence 59999999999999999999875 49999886
No 469
>PRK06996 hypothetical protein; Provisional
Probab=93.39 E-value=0.11 Score=53.64 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHHhcC-CccCEEEEEeec
Q 009897 227 GKRVTVIGFQKSAVDVAAEVANRNG-VRYPCTLLFKTV 263 (523)
Q Consensus 227 ~k~V~VvG~G~sg~d~a~~l~~~~~-~~~~Vt~~~r~~ 263 (523)
...|+|||+|+.|.-+|..|++.+. .+.+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 3479999999999999999998752 113599999865
No 470
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=93.30 E-value=0.26 Score=53.22 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 227 GKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 227 ~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
..+|+|||+|.+|.-+|..|++.+. +|+++.|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 3579999999999999999999865 4999999864
No 471
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=93.27 E-value=0.04 Score=57.58 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=25.6
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||||.+|+-.|...++.+.. |.|+.|.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCcc
Confidence 389999999999999999998764 999998764
No 472
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=93.26 E-value=0.27 Score=49.56 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.+|+|||||..|.-.|..+++.+-+ |.++.++..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGID---VVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence 5799999999999999999998865 888887543
No 473
>PRK10015 oxidoreductase; Provisional
Probab=93.17 E-value=0.14 Score=53.55 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=29.2
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|++|.-+|..|++.+. +|.++.|.+.
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~ 39 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGL---DVLVIERGDS 39 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCC
Confidence 69999999999999999999775 4999998764
No 474
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.13 E-value=0.14 Score=51.06 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=31.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 28 KMERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 28 ~~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
+...+|+|||+|.-|...|..|.+.|++|+++.++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34468999999999999999999999999999884
No 475
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.84 Score=45.00 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.|||+|||||-+|+.||.-|+--=-.|+++|=.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 3899999999999999999985444799998643
No 476
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.12 E-value=0.065 Score=59.82 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 225 INGKRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 225 ~~~k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
..|++|+|||+|++|.-.|..|.+.+.. |++..|+..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr 1819 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDR 1819 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCC
Confidence 4699999999999999999999998865 999999754
No 477
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=0.11 Score=52.03 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=40.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCceEEEccCCCCCccccc
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENGFKPIVFEARSGIGGVWSQ 71 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 71 (523)
.++||+|||-|..--..|.+..+.|.+|.=+|+++..||.|..
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waS 49 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWAS 49 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccc
Confidence 4589999999999999999999999999999999999999996
No 478
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.96 E-value=0.11 Score=51.60 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 32 KIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 32 ~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
+|.|||+|.-|...|..|++.|++|+++|+++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999864
No 479
>PRK07538 hypothetical protein; Provisional
Probab=92.95 E-value=0.16 Score=52.73 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=29.4
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
+|+|||+|.+|.-+|..|++.+. +|+++.|.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence 69999999999999999999865 4999999764
No 480
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.76 E-value=0.16 Score=45.56 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.+|+|+|+|.+|..||..|...|.+++++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 689999999999999999999999999999754
No 481
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=92.72 E-value=0.62 Score=49.81 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 228 KRVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 228 k~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
-.|+|||+|.+|+=.|..+++.+.. |.++.+.+.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~---VivlEK~~~ 95 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMN---PVILEKMPV 95 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 3699999999999999999998754 999998764
No 482
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=92.66 E-value=0.36 Score=50.55 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=35.7
Q ss_pred CcchhhhccC-C--CEEEEecC-ceEEe---------cC--cEEEcCCceeeeccEEEEecCCCCC
Q 009897 348 PRNFYDRVQG-G--GLSLMKSR-SFTFC---------KN--GLVIDGETTPLVTDIVIFATGYKSD 398 (523)
Q Consensus 348 ~~~~~~~~~~-g--~v~v~~~~-i~~~~---------~~--~v~l~dG~~~~~~D~VI~ATG~~~~ 398 (523)
...+++.+++ + +++++.+. +.+++ ++ .|++.+|++ +.+|.||-|-|....
T Consensus 120 ~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~-i~a~llVgADG~~S~ 184 (437)
T TIGR01989 120 QNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQV-LYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCE-EEeeEEEEecCCCCh
Confidence 3445565554 3 58888775 66663 22 367789988 999999999999864
No 483
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=92.66 E-value=0.11 Score=49.82 Aligned_cols=35 Identities=40% Similarity=0.408 Sum_probs=28.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-------CceEEEccCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLENG-------FKPIVFEARS 63 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~g-------~~v~v~e~~~ 63 (523)
+..+|+|||+|..||++|..+++.. .+|+|++.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 4578999999999999999988843 5788887654
No 484
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.65 E-value=0.17 Score=44.32 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 33 IAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 33 v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
|+|||+|..|...|..|.+.|.+|+++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 789999999999999999999999999884
No 485
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.58 E-value=0.14 Score=50.42 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 469999999999999999999999999999864
No 486
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=92.43 E-value=0.25 Score=51.10 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=29.3
Q ss_pred EEEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeece
Q 009897 229 RVTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTVH 264 (523)
Q Consensus 229 ~V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~~ 264 (523)
.|+|||+|++|.-+|..+++.+- +|.++.|.+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCC---eEEEEecCCC
Confidence 69999999999999999999874 4999999754
No 487
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.39 E-value=0.17 Score=51.04 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
.+|+|||+|.-|...|..|.+.|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999874
No 488
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.31 E-value=0.16 Score=51.09 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
++|.|||.|+.||..|..|++.|++|+++|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 379999999999999999999999999999764
No 489
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.14 E-value=0.2 Score=49.68 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
..+|+|||+|.-|...|..|.+.|.+|+++.|.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 357999999999999999999999999999985
No 490
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.06 E-value=0.18 Score=50.19 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
++|+|||+|.-|...|..++..|++|+++|.++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 679999999999999999999999999999864
No 491
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.03 E-value=0.2 Score=43.07 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-ceEEEccC
Q 009897 30 ERKIAIIGAGVSGLLACKYTLENGF-KPIVFEAR 62 (523)
Q Consensus 30 ~~~v~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~ 62 (523)
+++|+|||+|.-|..+|+.|.+.|+ +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 3689999999999999999999998 69999974
No 492
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.03 E-value=0.18 Score=49.54 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999853
No 493
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.94 E-value=0.2 Score=51.11 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
.+|+|||+|..|+.+|..|...|.+|+++|++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 67999999999999999999999999999985
No 494
>PRK04148 hypothetical protein; Provisional
Probab=91.92 E-value=0.14 Score=43.63 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
++|++||.| .|...|..|.+.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998764
No 495
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.89 E-value=0.18 Score=44.22 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=27.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCccCEEEEEeec
Q 009897 230 VTVIGFQKSAVDVAAEVANRNGVRYPCTLLFKTV 263 (523)
Q Consensus 230 V~VvG~G~sg~d~a~~l~~~~~~~~~Vt~~~r~~ 263 (523)
|+|+|+|..|.=+|..|++.+. +|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~---~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH---DVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC---EEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCC---ceEEEEccc
Confidence 7899999999999999999664 499998854
No 496
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=91.89 E-value=0.17 Score=53.95 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=32.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCceEEEccCCCC
Q 009897 29 MERKIAIIGAGVSGLLACKYTLEN-GFKPIVFEARSGI 65 (523)
Q Consensus 29 ~~~~v~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~ 65 (523)
.++|.+|||||-||...|..|.+. ..+|.++|+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 459999999999999999999996 5799999997665
No 497
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.86 E-value=0.18 Score=49.54 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
.+|+|||+|.-|...|..++..|++|+++|+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 498
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.86 E-value=0.24 Score=44.41 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=29.9
Q ss_pred CCcEEEECCCh-HHHHHHHHHHHCCCceEEEccC
Q 009897 30 ERKIAIIGAGV-SGLLACKYTLENGFKPIVFEAR 62 (523)
Q Consensus 30 ~~~v~IIGaG~-aGl~aA~~l~~~g~~v~v~e~~ 62 (523)
.++|+|||+|- +|..+|+.|.+.|.+|+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 48999999996 6999999999999999999874
No 499
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.83 E-value=0.21 Score=48.99 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARS 63 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 63 (523)
++|+|||+|.-|...|..+++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 579999999999999999999999999999754
No 500
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.83 E-value=0.19 Score=52.17 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCceEEEccCCC
Q 009897 31 RKIAIIGAGVSGLLACKYTLENGFKPIVFEARSG 64 (523)
Q Consensus 31 ~~v~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 64 (523)
++|+|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6799999999999999999999999999998654
Done!