Your job contains 1 sequence.
>009898
MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC
MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL
GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV
LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY
SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN
LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES
ACPEKIVEFEERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMS
EDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSPVQCRNVSRI
REMSDQPINTIELSDSETEKSPELERKARALRMFIASIRDDIS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009898
(523 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 1235 9.9e-126 1
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 300 3.4e-23 1
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 277 5.6e-23 2
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 266 1.2e-22 3
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 268 1.8e-22 3
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 290 2.6e-22 1
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 260 8.8e-22 1
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 256 7.5e-21 3
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 255 8.8e-21 2
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 250 1.1e-20 1
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 253 1.6e-19 2
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 250 5.8e-19 2
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 252 5.1e-18 1
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 245 2.6e-17 1
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 244 3.9e-17 1
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 242 5.5e-17 1
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 242 5.5e-17 1
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 243 5.7e-17 1
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 243 8.3e-17 1
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 230 1.1e-16 2
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 240 1.2e-16 1
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 239 1.2e-16 1
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 240 1.8e-16 1
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 238 2.0e-16 1
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 234 5.3e-16 1
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 233 6.3e-16 2
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 223 2.1e-15 2
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 228 2.4e-15 2
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 239 2.4e-15 2
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 218 1.1e-14 2
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 215 9.1e-14 1
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 215 9.1e-14 1
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 168 1.4e-09 1
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 163 5.6e-09 1
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 157 2.5e-08 1
WB|WBGene00020442 - symbol:gen-1 species:6239 "Caenorhabd... 153 7.9e-08 2
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 152 8.6e-08 1
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 152 8.6e-08 1
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 151 1.1e-07 1
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 151 1.1e-07 1
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 151 1.1e-07 1
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 150 1.5e-07 1
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 149 1.8e-07 1
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 148 2.4e-07 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 145 4.3e-07 1
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 146 5.7e-07 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 143 8.6e-07 1
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 140 8.9e-07 2
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 142 1.1e-06 1
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 140 1.9e-06 1
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 139 2.4e-06 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 138 3.1e-06 1
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 144 1.3e-05 2
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 142 1.6e-05 2
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 142 1.6e-05 2
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 136 1.7e-05 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 135 2.2e-05 1
UNIPROTKB|G4MVT4 - symbol:MGG_01800 "Flap structure-speci... 135 2.6e-05 1
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 136 4.0e-05 3
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 128 8.0e-05 2
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 128 0.00012 1
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 122 0.00012 2
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 135 0.00013 2
ASPGD|ASPL0000035217 - symbol:AN3186 species:162425 "Emer... 127 0.00027 2
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 124 0.00033 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 121 0.00063 1
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 257/544 (47%), Positives = 360/544 (66%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 60
+++ + + +++ +G+IP IK+ TY+RRL + E+ D K +SL+RNMGSEFSC
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFS DSDIFLFGA+TVYR+I L
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICL 180
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
GE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E AC++V+S+GDNV+
Sbjct: 181 GEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGDNVI 240
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L+++ASEGLSF ++ + SKK+ C+ K+ +L + +NG + +R QVIDA+
Sbjct: 241 LEKVASEGLSFAEKPRKSKKQVRPSVCS-KKGTLPLVV-INGNNRDPERLEEIKQVIDAF 298
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 300
NPKC+ ADS V R LA+ FQ +L ++C QFF+WPPEKTDEYILPK+AER+LRRFAN
Sbjct: 299 MNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAERNLRRFAN 358
Query: 301 LRANTLALGVDLPLQK--VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 358
L++ + + V+LPL K +P KCP++ IIK+RK+QG+ECFEVSW + GL+SS+VPADL+
Sbjct: 359 LQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLV 418
Query: 359 ESACPEKIVEFEERRALRQXXXXXXXXXAAEIDQKLQALMLDIXXXXXXXXXXXXXXXXX 418
E ACPEKI+EF+E+ A ++ + ++++
Sbjct: 419 ERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDLNSTSLVSR 478
Query: 419 XX-EDWTAATEIDLTRRQDLL--LDAESKSNAN------------MSCYPTGSTAAKAEI 463
E+ E +++ D L +D+ + N N MS +P + E+
Sbjct: 479 STLEEAEQENEQQNSKKHDYLRLIDSPDRENCNNAWSNRDRLGVGMSSFPL---YPETEV 535
Query: 464 IDLVSPSP-VQCRNVSRI---REMSDQPINTIELSDSETEKSPELE-RKARALRMFIASI 518
IDL+SP P + R+VSR ++ D + T+ + S++E E +KAR LR+F+ +I
Sbjct: 536 IDLISPCPEARSRSVSRSYQEQKSHDHQLETV-IELSDSETDDEEHCKKARELRIFLQNI 594
Query: 519 RDDI 522
R DI
Sbjct: 595 RKDI 598
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 300 (110.7 bits), Expect = 3.4e-23, P = 3.4e-23
Identities = 92/278 (33%), Positives = 140/278 (50%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 909 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 968
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 969 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1027
Query: 165 PESACQIVKSVGDNVVLQRIAS--EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 222
+A ++V + + LQ+ E K K G K N+ I ++G
Sbjct: 1028 IVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGI-ISG 1086
Query: 223 --TDHSLQRETPFS----QVIDAYSNPKCYSADSEAVHRV-------LAQHLFQHAR--- 266
TD + + + F +V + P + SEAV L+ F +
Sbjct: 1087 ASTDDTEEIKQIFMDQHRKVSKNWHIPLTFP--SEAVISAYLNPQVDLSTEKFSWGKPDL 1144
Query: 267 --LHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLR 302
L ++C + F W +KTDE +LP + E + +R LR
Sbjct: 1145 SVLRKLCWEKFNWNGKKTDELLLPVLKEYE-KRETQLR 1181
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 277 (102.6 bits), Expect = 5.6e-23, Sum P(2) = 5.6e-23
Identities = 64/171 (37%), Positives = 98/171 (57%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGV 74
+ G P +K T +R +E+ N ++ R S F ++KE L LGV
Sbjct: 9 MEGEAPKLKADTMSKR----NEIRYGASNKHGVARTGR---SSFKSILKECLQLLECLGV 61
Query: 75 PCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCYEMDD 133
P ++ EAEA CA LN + DGC ++D D+FL+GA+TVYR+ + + ++ CY M
Sbjct: 62 PWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKEPHLDCYTMSS 121
Query: 134 IERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQR 183
I+ KLG R SLI LA+LLG DY +G+ G+G E A ++++++ +LQR
Sbjct: 122 IKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETLRGQNLLQR 172
Score = 55 (24.4 bits), Expect = 5.6e-23, Sum P(2) = 5.6e-23
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 326 IIKSRKLQGKECFEVSWEE-SYGLKSSVVPADL 357
I+K+R G CFE+ W++ + + + P DL
Sbjct: 337 IVKTRVKNGIPCFEIEWQKPEHYVDAEDEPMDL 369
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 266 (98.7 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 55/130 (42%), Positives = 81/130 (62%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ LG R+SL+ LA+LLG DY +GV G+G E A +++K
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQALKLIK 227
Query: 174 SVGDNVVLQR 183
++ +LQR
Sbjct: 228 TLKGQSLLQR 237
Score = 68 (29.0 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 322 PITGIIKSRKLQGKECFEVSWE--------ESYG--LKSSVVPADLIESACPEKIVEFEE 371
PI I+K+R G CFE+ WE + YG + ++ L E+A PE + +++
Sbjct: 399 PIR-IVKTRIRNGVRCFEIEWEKPEHYTTEDEYGELVLQTIEEESLFEAAYPEIVAIYQK 457
Query: 372 RRA 374
+++
Sbjct: 458 QKS 460
Score = 46 (21.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 453 PTGSTAAKAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKA 508
P KA L++ S + I ++D ++TI+ + SP + R A
Sbjct: 551 PLARQQIKAVSKSLIAESSQPSTSTHNISAIADLHLSTIDWEGTSFSNSPAISRSA 606
Score = 41 (19.5 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 194 RAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR-ETP 232
+ + K FK N+ +S N + + T+ +Q +TP
Sbjct: 821 KQSSQKHSPAQFKKNDTNKSSNPKTRIKETEQGIQAYKTP 860
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 268 (99.4 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 55/130 (42%), Positives = 81/130 (62%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A +++K
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIK 227
Query: 174 SVGDNVVLQR 183
+ +LQR
Sbjct: 228 ILKGQSLLQR 237
Score = 66 (28.3 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 322 PITGIIKSRKLQGKECFEVSWE--ESYGLKS--------SVVPADLIESACPEKIVEFEE 371
PI I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +++
Sbjct: 400 PIR-IVKNRIRNGVHCFEIEWEKPEHYTIEDKHGELAVQTIEEESLFEAAYPEIVAIYQK 458
Query: 372 RRA 374
+++
Sbjct: 459 QKS 461
Score = 44 (20.5 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 20/89 (22%), Positives = 40/89 (44%)
Query: 424 TAATEIDLTRRQDLLLDAESKS--NANMSCYPTGSTAAKAEIID----LVSPSPVQCRNV 477
+A+ E ++ ++LL AE + A + + A +I D L++ S +
Sbjct: 517 SASPEESISTSLNVLLLAEDAACLTAQEQLISSPRSLAMQQIKDISKSLIAESSQPSTSS 576
Query: 478 SRIREMSDQPINTIELSDSETEKSPELER 506
I ++D ++TI+ + KSP + R
Sbjct: 577 HNISAVADLHLSTIDWEGTSFSKSPAISR 605
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 290 (107.1 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 85/275 (30%), Positives = 141/275 (51%)
Query: 24 LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 83
LST R N +D+ ++ +R+ MIKE + L G+P + EA
Sbjct: 735 LSTSAER-NVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEA 793
Query: 84 EAQCA-LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGR 142
EAQCA LL L +L DG + DSD+FLFG +Y++++ E+ YV Y+ + I + LG R
Sbjct: 794 EAQCAELLQL-NLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYDAESILKLLGLDR 851
Query: 143 NSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEG 202
++I LA LLGSDY+ G++G+GP S+ +++ G+ + + G F KR + ++ +
Sbjct: 852 KNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKNFKDWYNNG-QFDKRKQETENK- 909
Query: 203 WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLF 262
F+ + +++ +N EI L + P V DAY P+ + V V +
Sbjct: 910 --FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDML 960
Query: 263 QHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+ Q+ WP EK+DE ++P I + + R+
Sbjct: 961 RSFMKTQL-----GWPHEKSDEILIPLIRDVNKRK 990
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 260 (96.6 bits), Expect = 8.8e-22, P = 8.8e-22
Identities = 61/167 (36%), Positives = 94/167 (56%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGV 74
+ G P +K T +R +E+ N ++ R S F ++KE L LGV
Sbjct: 31 MEGEAPKLKADTMSKR----NEIRYGASNKHGVARTGR---SSFKSILKECLQLLECLGV 83
Query: 75 PCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER-----GYVVCY 129
P ++ EAEA CA LN + DGC ++D D+FL+GA+TVYR+ + + ++ CY
Sbjct: 84 PWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKLSFKEPHLDCY 143
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSV 175
M I+ KLG R SLI LA+LLG DY +G+ G+G E A ++++++
Sbjct: 144 TMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETL 190
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 256 (95.2 bits), Expect = 7.5e-21, Sum P(3) = 7.5e-21
Identities = 53/130 (40%), Positives = 81/130 (62%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQR 183
+ +LQR
Sbjct: 228 ILKGQSLLQR 237
Score = 66 (28.3 bits), Expect = 7.5e-21, Sum P(3) = 7.5e-21
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 322 PITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEFE 370
PI I+K+R G CFE+ WE E Y ++ ++ L E+A PE + ++
Sbjct: 399 PIR-IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVYQ 457
Query: 371 ERR 373
+++
Sbjct: 458 KQK 460
Score = 42 (19.8 bits), Expect = 7.5e-21, Sum P(3) = 7.5e-21
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 450 SCYPTGSTAAKAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELER 506
S P KA L+S S + I ++D ++TI+ + SP ++R
Sbjct: 547 SLRPLAIQQIKAVSKSLISESSQPNTSSHNISVIADLHLSTIDWEGTSFSNSPAIQR 603
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 255 (94.8 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 53/130 (40%), Positives = 80/130 (61%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQR 183
+ +LQR
Sbjct: 228 ILKGQSLLQR 237
Score = 68 (29.0 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 322 PITGIIKSRKLQGKECFEVSWE--ESYGLKS--------SVVPADLIESACPEKIVEFEE 371
PI I+KSR G CFE+ WE E Y ++ ++ L E+A PE + +++
Sbjct: 398 PIR-IVKSRIRNGIHCFEIEWEKPEHYAIEDQHGELVLQTIEEKSLFEAAYPEIVAVYQK 456
Query: 372 R 372
+
Sbjct: 457 Q 457
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 250 (93.1 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 62/170 (36%), Positives = 91/170 (53%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGV 74
+ G P +K T +R +E+ N ++ R S F ++KE L LGV
Sbjct: 84 MEGEAPKLKADTMSKR----NEIRYGASNKHGVARTGR---SSFKSILKECLQLLECLGV 136
Query: 75 PCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI-----------WLGER 123
P ++ EAEA CA LN + DGC ++D D+FL+GA+TVYR+ W +
Sbjct: 137 PWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKSSQKCTWKLKE 196
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIV 172
++ CY M I+ KLG R SLI LA+LLG DY +G+ G+G E A +++
Sbjct: 197 PHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLI 246
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 253 (94.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 63/184 (34%), Positives = 99/184 (53%)
Query: 3 SYLHYSSA-LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM 61
SYL + L+ + G P +K +R TQ S ++ S F +
Sbjct: 61 SYLTQMNVKLVFVMEGEPPKLKADVMNKR-------TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 122 ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 179
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 174 TKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQILKGQS 233
Query: 180 VLQR 183
+LQR
Sbjct: 234 LLQR 237
Score = 58 (25.5 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 322 PITGIIKSRKLQGKECFEVSWE--ESYGLKSS---------VVPADLIESACPEKIVEFE 370
PI I+K R G C E+ WE E Y ++ + + A L E+A PE + ++
Sbjct: 398 PIR-IVKPRIRNGVCCLEIEWEKPEHYSVEDTQPGGLDLLTIEEASLFEAAYPEVVAIYQ 456
Query: 371 ERRA 374
++++
Sbjct: 457 KQQS 460
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 250 (93.1 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 63/184 (34%), Positives = 98/184 (53%)
Query: 3 SYLHYSSA-LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM 61
SYL + L+ + G P +K +R TQ S ++ S F +
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 122 ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 179
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 180 VLQR 183
+LQR
Sbjct: 234 LLQR 237
Score = 56 (24.8 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 322 PITGIIKSRKLQGKECFEVSWE--ESYGL------KSSVVP---ADLIESACPEKIVEFE 370
PI I+K R G C E+ WE E Y + K S++ A L E+A P+ + ++
Sbjct: 398 PIR-IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVYQ 456
Query: 371 ER 372
++
Sbjct: 457 KQ 458
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 252 (93.8 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 78/241 (32%), Positives = 117/241 (48%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 716 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFS 775
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ YV Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 776 RNK-YVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 825
Query: 181 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLN-QEINVNGTDHSLQRETPFSQ--V 236
L GL +K A E W+ NK+ N ++ V LQ + F V
Sbjct: 826 LNEFPGHGLEPLLKFA-----EWWNEAQKNKKIRPNPRDTKVKKKLRELQLSSGFPNPAV 880
Query: 237 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 296
+AY P D + + + R + C F W KTDE +LP I + +L+
Sbjct: 881 AEAYLKPV---VDETRGSFIWGKPDVEQIR--EFCKDHFGWTRTKTDEILLPVIKQLNLQ 935
Query: 297 R 297
+
Sbjct: 936 Q 936
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 245 (91.3 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 81/283 (28%), Positives = 134/283 (47%)
Query: 21 AIKLSTYRRRLNS-GSEVTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLE 78
A+ +T++ L ++++ + + L + + + + M E++ L G+P +E
Sbjct: 743 ALSQNTFQEELEELENDLSAEQEMLQSQKQQQERVATSVTGQMFLESQELLRLFGIPYIE 802
Query: 79 GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKL 138
EAEAQCA+L+L G + DSD++LFGAR VY++ + + YV Y+ D + +L
Sbjct: 803 APMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFSRNK-YVEYYQYIDFQNQL 861
Query: 139 GFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLS-FVKRAKN 197
G R+ LI LA LLGSDY++G+ +G +A +I L GL +K A
Sbjct: 862 GLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI---------LNEFPGHGLEPLLKFA-- 910
Query: 198 SKKEGWSFKCNNKEESLN-QEINVNGTDHSLQRETPFSQ--VIDAYSNPKCYSADSEAVH 254
E W+ NK+ N ++ V LQ + F V +AY P D
Sbjct: 911 ---EWWNEAQKNKKIRPNPRDTKVKKKLRELQLSSGFPNPAVAEAYLKPV---VDETRGS 964
Query: 255 RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+ + + R + F W KTDE +LP I + +L++
Sbjct: 965 FIWGKPDVEQIREYPF--NHFGWTRTKTDEILLPVIKQLNLQQ 1005
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 244 (91.0 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 82/258 (31%), Positives = 125/258 (48%)
Query: 49 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIF 107
S +R+ MIKE + L G+P + +EAEAQC+ LL L+ L DG + DSD+F
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELK-LVDGIVTDDSDVF 802
Query: 108 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
LFG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP
Sbjct: 803 LFGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVL 861
Query: 168 ACQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 226
A +I+ GD GL K+ G + K N+ + + IN
Sbjct: 862 ALEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGKII 911
Query: 227 LQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYI 286
L E P V +AY +P DS+ + L + L Q W ++T+E +
Sbjct: 912 LPSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDLDE---LRQFLMATVGWSKQRTNEVL 966
Query: 287 LPKIAERDLRRFANLRAN 304
LP I + ++F ++N
Sbjct: 967 LPVIQDMHKKQFVGTQSN 984
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 242 (90.2 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 51/143 (35%), Positives = 81/143 (56%)
Query: 35 SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 94
+ +T + +K +R+ MI + + L G+P + EAEAQCA L
Sbjct: 703 TRITDEQLLQEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIG 762
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154
L DG + DSD FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGS
Sbjct: 763 LVDGIVTDDSDCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGS 821
Query: 155 DYSQGVRGLGPESACQIVKSVGD 177
DY++G++G+GP A +I+ G+
Sbjct: 822 DYTEGIKGIGPVQAMEILAEFGN 844
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 242 (90.2 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 51/143 (35%), Positives = 81/143 (56%)
Query: 35 SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 94
+ +T + +K +R+ MI + + L G+P + EAEAQCA L
Sbjct: 703 TRITDEQLLQEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIG 762
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154
L DG + DSD FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGS
Sbjct: 763 LVDGIVTDDSDCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGS 821
Query: 155 DYSQGVRGLGPESACQIVKSVGD 177
DY++G++G+GP A +I+ G+
Sbjct: 822 DYTEGIKGIGPVQAMEILAEFGN 844
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 243 (90.6 bits), Expect = 5.7e-17, P = 5.7e-17
Identities = 74/240 (30%), Positives = 113/240 (47%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 784 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF- 842
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 843 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 893
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 237
L GL +++ E W NK+ N + V LQ F V
Sbjct: 894 LNEFPGHGLEPLRKFS----EWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVA 949
Query: 238 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
DAY P D + + ++ + C ++F W KTDE + P + + ++ +
Sbjct: 950 DAYLKPV---VDESKGSFLWGKPDLD--KIREFCQRYFGWNRTKTDESLFPVLKQLNVHQ 1004
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 243 (90.6 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 74/240 (30%), Positives = 113/240 (47%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1198 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF- 1256
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1257 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1307
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 237
L GL +++ E W NK+ N + V LQ F V
Sbjct: 1308 LNEFPGHGLEPLRKFS----EWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVA 1363
Query: 238 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
DAY P D + + ++ + C ++F W KTDE + P + + ++ +
Sbjct: 1364 DAYLKPV---VDESKGSFLWGKPDLD--KIREFCQRYFGWNRTKTDESLFPVLKQLNVHQ 1418
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 230 (86.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 59/184 (32%), Positives = 93/184 (50%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG----SEFSCMIKEAKALGL 70
L G P +K +R N KN + + + + G S F+ ++K+ + L L
Sbjct: 73 LEGVAPKLKSQVIAKR-NELQFRGVKPKNSPECTQSQPSKGDKGRSRFNHVLKQCETLLL 131
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY----- 125
S+G+ C++G EAEA CA LN L DG S DSD F +GA VYR+ + +G
Sbjct: 132 SMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAG 191
Query: 126 --VVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQ 182
V Y+M +I ++ FG+ +I +ALL G DY G+ G+G + ++ + +L
Sbjct: 192 GAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEILD 251
Query: 183 RIAS 186
R+ S
Sbjct: 252 RMRS 255
Score = 53 (23.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 326 IIKSRKLQGKECFEVSWEESYGLKSSVVPADLI---ESACPEKIVE 368
IIK R ++G E+ W + G+ ++P I E+ P+ I E
Sbjct: 404 IIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEE 449
Score = 50 (22.7 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 324 TGIIKSRKLQGKECFEVSWEESYGLKS---SVVPADLIESACPEKIVEFEERRALRQXXX 380
+GI K + K+ E E G++ ++ P D++E+A P+ + F + +
Sbjct: 424 SGIFKGL-IPDKQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKEKPAKKT 482
Query: 381 XXXXXXAAEIDQK 393
A+E + K
Sbjct: 483 TRKKKTASEEENK 495
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 240 (89.5 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 76/235 (32%), Positives = 109/235 (46%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 769 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF- 827
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 828 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 878
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 237
L GL + + E W NK+ N + V LQ F V
Sbjct: 879 LNEFPGHGLEPLLKFS----EWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVA 934
Query: 238 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292
DAY P DS L ++ + C ++F W KTDE + P + +
Sbjct: 935 DAYLKPVV--DDSRGSFLWGKPDL---DKIREFCQRYFGWNRTKTDESLFPVLKQ 984
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 239 (89.2 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 80/262 (30%), Positives = 125/262 (47%)
Query: 36 EVTQDDKNL-DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 94
E+ + + L ++ +R+ + M +E++ L GVP + EAEAQCA L+
Sbjct: 632 ELQDEQQTLREQHQQQQRSSSTVTGQMCQESQELLRLFGVPFIVAPMEAEAQCAALDRLD 691
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154
G + DSDI+LFG R VYR+ + + YV Y++ D++ +LG R+ LI LA LLGS
Sbjct: 692 QTHGTITDDSDIWLFGGRHVYRNFF-NQNKYVEHYQIVDMQNQLGLDRSKLINLAYLLGS 750
Query: 155 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESL 214
DY++G+ G+G + +I L GL + + E W+ NK+ S+
Sbjct: 751 DYTEGIPGVGYVTGMEI---------LNEFPGAGLEPLVQLS----EWWTEAQENKKLSV 797
Query: 215 N-QEINVNGTDHSLQRETPFSQ--VIDAYSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV 270
N ++ V +LQ F V AY P S D S+A HL + +
Sbjct: 798 NPKDTKVKKKLRNLQIHPGFPNPAVAQAYLQP---SVDQSDASFSWGRPHL---DLIKEF 851
Query: 271 CAQFFQWPPEKTDEYILPKIAE 292
C F W KT+E + P + +
Sbjct: 852 CQSRFGWSSRKTEETLQPVLKQ 873
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 240 (89.5 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 76/235 (32%), Positives = 109/235 (46%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1184 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF- 1242
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1243 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1293
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 237
L GL + + E W NK+ N + V LQ F V
Sbjct: 1294 LNEFPGHGLEPLLKFS----EWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVA 1349
Query: 238 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292
DAY P DS L ++ + C ++F W KTDE + P + +
Sbjct: 1350 DAYLKPVV--DDSRGSFLWGKPDL---DKIREFCQRYFGWNRTKTDESLFPVLKQ 1399
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 238 (88.8 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 71/237 (29%), Positives = 116/237 (48%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFF- 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+ +
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHG- 885
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L+ + + + KN K + N + + +++ L P V +AY
Sbjct: 886 LEPLLKFSEWWHEAQKNPK-----IRPNPHDTKVKKKLRTL----QLTPGFPNPAVAEAY 936
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
P DS+ L ++ + C ++F W KTDE + P + + D ++
Sbjct: 937 LKPVV--DDSKGSFLWGKPDL---DKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQ 988
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 234 (87.4 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 76/231 (32%), Positives = 108/231 (46%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFF- 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ-EINVNGTDHSLQRETPFSQ--VI 237
L GL + + E W NNK+ + N + V LQ F V
Sbjct: 877 LNEFPGRGLDPLLKFS----EWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVA 932
Query: 238 DAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
DAY P DS + ++ C ++F W KTDE + P
Sbjct: 933 DAYLRPVV--DDSRGSFLWGKPDV---DKISTFCQRYFGWNRMKTDESLYP 978
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 233 (87.1 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 60/149 (40%), Positives = 85/149 (57%)
Query: 31 LNSG--SEVTQD-DKNLDKMSSL----RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 83
LNS SE T D ++ L ++ S RR+ MI E + L G+P + EA
Sbjct: 771 LNSAPHSEGTFDYEQELKQLRSQQKKDRRDADEVTQIMITECQQLLRLFGLPYITAPMEA 830
Query: 84 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN 143
EAQCA L L DG + DSDIFLFG VY++++ + YV CY D+E++ R
Sbjct: 831 EAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF-NQSKYVECYLTADLEKEYALHRR 889
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIV 172
LI+ A LLGSDY++G+ G+GP +A +I+
Sbjct: 890 KLISFAHLLGSDYTEGIPGIGPVTALEIL 918
Score = 48 (22.0 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 277 WPPEKTDEYILPKIAERDLRRFANLRAN 304
W E+TDE ++P I + + R ++N
Sbjct: 1006 WSQERTDEVLVPVIRDINQREQEGTQSN 1033
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 223 (83.6 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1156 MFLESQELLRLFGVPYIEAPMEAEAQCAILDLSDQTSGTITDDSDIWLFGARHVYKNFF- 1214
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+
Sbjct: 1215 NKNKFVEYYQYVDFHSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEIL 1266
Score = 57 (25.1 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 266 RLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANT 305
++ + C ++F W KTDE + P + + + ++ LR ++
Sbjct: 1337 KIREFCQRYFGWNRTKTDESLFPVLKQLNAQQ-TQLRIDS 1375
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 228 (85.3 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 52/134 (38%), Positives = 77/134 (57%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA+TV
Sbjct: 122 AKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVI 181
Query: 116 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
+ + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A + V+
Sbjct: 182 KVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQL 241
Query: 175 VGDNVVLQRIASEG 188
++ VL ++ G
Sbjct: 242 FDEDNVLAKLYEIG 255
Score = 40 (19.1 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 356 DLIESACPEKIVEFEERRALRQ 377
+L+ +A P++ F+E + L++
Sbjct: 536 ELVNAAFPDEAQRFQEEQRLKE 557
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 239 (89.2 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 78/288 (27%), Positives = 132/288 (45%)
Query: 35 SEVTQDDKNLDKMSSLRRNMGSEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLE 93
+ + Q+ K L+ + + MG S + + + L G+P + EAEAQCA LN
Sbjct: 853 TNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNAT 912
Query: 94 SLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 153
L G + DSDI+LFG RTVY++ + + +V+ + + IE+ R LI LA L+G
Sbjct: 913 DLTHGTITDDSDIWLFGGRTVYKNFF-AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG 971
Query: 154 SDYSQGVRGLGPESACQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGW-SFKCNNKE 211
SDY+ G+ G+G +A +I+ S G + I ++ V + ++ W + KC+N
Sbjct: 972 SDYTTGIHGIGAVTALEILASFSGQDANGPGICNQS---VLQTLIKFRDWWQAHKCSNLP 1028
Query: 212 ESLNQEINVNGT--DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQ 269
+ + + + L P V++AY P + D + + +
Sbjct: 1029 PGSSARLALRKKLKNIELHEGFPSGAVVEAYLAP---TIDDN--RDAFSWGTPDVESIRE 1083
Query: 270 VCAQFFQWPPEKTDEYILP---KIAERDLR-RFANLRANTLALGVDLP 313
+ F W KTD+ ++P KI E+ ++ N AL V P
Sbjct: 1084 FTRKSFGWTTSKTDDILMPVMKKINEKKIQGSIRNYFTAKSALRVQQP 1131
Score = 37 (18.1 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQD 40
L+Y + +G +P +K T RR ++++ +
Sbjct: 87 LYYRVRPVFIFDGCVPQLKRDTIARRQQQRNKLSNE 122
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 218 (81.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 55/180 (30%), Positives = 92/180 (51%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSE-VTQDDKNLDKMSSLRRNMG-SEFSCMIKEAKALGLSL 72
L G P +K +R V D ++ + + G + F+ ++K+ + L LS+
Sbjct: 73 LEGVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAKVDKGRTRFNHVLKQCETLLLSM 132
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY------- 125
G+ C++G EAEA A LN L DG S DSD F +GA VYR+ + +G
Sbjct: 133 GIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNFSVSTQGAQAAAGGA 192
Query: 126 VVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQRI 184
V Y+M +I ++ FG++ +I +ALL G DY G+ G+G + ++ ++ +L R+
Sbjct: 193 VDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKESEILDRL 252
Score = 47 (21.6 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 335 KECFEVSWEESYGLKS---SVVPADLIESACPEKIVEF 369
K+ E E G++ +V P D++E+A P+ + F
Sbjct: 438 KQISEFELEHPKGIEELYYTVEPLDMLEAAYPDLVASF 475
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 215 (80.7 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 67/227 (29%), Positives = 111/227 (48%)
Query: 36 EVTQDDKNLDK-MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 94
E ++++ L K L++N M + K L G+P ++ EAEAQC+ LN ++
Sbjct: 1185 ETNKENEELIKEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKN 1244
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154
CD S DSD+ +F +TV ++ + ++ V YE IE KLG + LI ++LL G
Sbjct: 1245 YCDAIISDDSDVLVFSGKTVIKNFF-NKKKTVEVYEKKAIEEKLGLYQEELINISLLCGC 1303
Query: 155 DYSQGVRGLGPESACQIVKSVG---DNVVLQRIASEGLSFVKRAKNS-KKEGWSFKCNNK 210
DY+ GV G+G +A +I+K+ D +L+ I S F K KN +E F +K
Sbjct: 1304 DYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIVSN--PFRKIDKNMYNEEIQQFLNTHK 1361
Query: 211 EESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVL 257
LN N D + + + +V + + D +++ + L
Sbjct: 1362 NYKLNWIFPNNFPDREVYKCFKYPKVCTDIKKFEWHVPDIKSITKFL 1408
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 215 (80.7 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 67/227 (29%), Positives = 111/227 (48%)
Query: 36 EVTQDDKNLDK-MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 94
E ++++ L K L++N M + K L G+P ++ EAEAQC+ LN ++
Sbjct: 1185 ETNKENEELIKEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKN 1244
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154
CD S DSD+ +F +TV ++ + ++ V YE IE KLG + LI ++LL G
Sbjct: 1245 YCDAIISDDSDVLVFSGKTVIKNFF-NKKKTVEVYEKKAIEEKLGLYQEELINISLLCGC 1303
Query: 155 DYSQGVRGLGPESACQIVKSVG---DNVVLQRIASEGLSFVKRAKNS-KKEGWSFKCNNK 210
DY+ GV G+G +A +I+K+ D +L+ I S F K KN +E F +K
Sbjct: 1304 DYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIVSN--PFRKIDKNMYNEEIQQFLNTHK 1361
Query: 211 EESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVL 257
LN N D + + + +V + + D +++ + L
Sbjct: 1362 NYKLNWIFPNNFPDREVYKCFKYPKVCTDIKKFEWHVPDIKSITKFL 1408
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 59/227 (25%), Positives = 105/227 (46%)
Query: 29 RRLNSGSEVTQDDKNLDKMSSLRR--NMGSEFSCMIKEA-KALGLSLGVPCLEGVEEAEA 85
RR+ + ++ + L+KM RR + E + +EA K LGL +G+P + EAEA
Sbjct: 104 RRVETEKKLAEATTELEKMKQERRLVKVSKEHN---EEAQKLLGL-MGIPYIIAPTEAEA 159
Query: 86 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRN 143
QCA L + S D D + + R + E +E+D + R L
Sbjct: 160 QCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIE 219
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGW 203
+ L ++LG DY + +RG+GP +A +++K+ G + G S K E W
Sbjct: 220 QFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGES--NNTKWKIPEDW 277
Query: 204 SFKCNNKEESLNQEINVNGTDHSLQRETPFS-QVIDAYSNPKCYSAD 249
+K + L+ E+ ++G + +L+ P ++I+ + K +S +
Sbjct: 278 PYK-QARMLFLDPEV-IDGNEINLKWSPPKEKELIEYLCDDKKFSEE 322
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 163 (62.4 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 60/225 (26%), Positives = 103/225 (45%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P ++ EAEAQCA+L S D D F A + R + E+
Sbjct: 140 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 199
Query: 124 GYVVCYEMDDIERKL-GFG--RNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ + R L G G RN I L +LLG DY + + +GP +A ++++ D+
Sbjct: 200 RKEPIQEIH-LNRALEGLGMDRNQFIDLCILLGCDYLEPIPKVGPNTALKLIR---DHGT 255
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI-NVNGTDHSLQRETP-FSQVID 238
L+++ E + + K E W ++ + +E LN ++ + N + + E P ++D
Sbjct: 256 LEKVV-ESIEKDPKQKYVIPESWPYQ-DARELFLNPDVRDANDPECDFKWEAPDIEGLVD 313
Query: 239 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTD 283
K ++ D Q + A+ ++ FF+ P KTD
Sbjct: 314 FLVKDKGFNEDRVRNGAARLQKNLKTAQQSRL-EGFFK-PVAKTD 356
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 157 (60.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 47/169 (27%), Positives = 78/169 (46%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
DD ++K + + E + KEAK L +GVP ++ EAEAQCA L
Sbjct: 119 DDAGIEKFNRRLVRVTKEHA---KEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYAT 175
Query: 100 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYS 157
+ D D FG+ + R + E + E D + L I L +LLG DY
Sbjct: 176 ATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYC 235
Query: 158 QGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 206
+ ++G+GP+ A +++ + D ++ I L + +K + E W++K
Sbjct: 236 ESIKGIGPKRAIELINTYRD---IETI----LDNLDSSKYTVPENWNYK 277
>WB|WBGene00020442 [details] [associations]
symbol:gen-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0008821 "crossover junction
endodeoxyribonuclease activity" evidence=IDA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IMP] [GO:0072422 "signal
transduction involved in DNA damage checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0005737
GO:GO:0008630 GO:GO:0003677 GO:GO:0000003 GO:GO:0000724
GO:GO:0008821 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091542 EMBL:FO080619 PIR:T34350
RefSeq:NP_498361.1 ProteinModelPortal:Q22418 STRING:Q22418
EnsemblMetazoa:T12A2.8.1 EnsemblMetazoa:T12A2.8.2 GeneID:175885
KEGG:cel:CELE_T12A2.8 UCSC:T12A2.8.1 CTD:175885 WormBase:T12A2.8
HOGENOM:HOG000021109 InParanoid:Q22418 OMA:HIWLYES NextBio:890148
GO:GO:0072422 Uniprot:Q22418
Length = 434
Score = 153 (58.9 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 54/176 (30%), Positives = 81/176 (46%)
Query: 31 LNSGSEVTQDDKNLDKMSSLRRNMG-SEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQ 86
+N+ S + + + RR+ G S F+ ++ + AL LG+ + + EAQ
Sbjct: 78 INASSSAHESKDQNEFVPRKRRSFGDSPFTNLVDHVYKTNALLTELGIKVIIAPGDGEAQ 137
Query: 87 CALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLG--F---- 140
CA L + GC ++D D FLFG + +YR + C D + LG F
Sbjct: 138 CARLEDLGVTSGCITTDFDYFLFGGKNLYRFDFTAGTSSTACLH-DIMHLSLGRMFMEKK 196
Query: 141 -GRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDN--------VVLQRIAS 186
R LI+ A+LLG DY Q GV+ +G S I+ GD+ V+L R AS
Sbjct: 197 VSRPHLISTAILLGCDYFQRGVQNIGIVSVFDILGEFGDDGNEEIDPHVILDRFAS 252
Score = 43 (20.2 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 471 PVQCRNVSRIREMSDQPINTIELSDSE 497
P + R+V +IR P + IEL DS+
Sbjct: 409 PDRKRSV-KIRAFKPYPTDVIELGDSD 434
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 152 (58.6 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 35/112 (31%), Positives = 57/112 (50%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ E ++ I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 152 (58.6 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ E + + ++LG + + L +LLGSDY + VRG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVRGIGPKRAVDLIQ 251
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ E + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ E + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +GVP L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ E + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 150 (57.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 40/151 (26%), Positives = 70/151 (46%)
Query: 25 STYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAE 84
S + L E ++ N++K S + + + E K L + +G+P +E EAE
Sbjct: 105 SEAEKHLQEAQEAGEE-ANIEKFSKRLVKVTQQHT---DECKKLLMLMGIPYVEAPGEAE 160
Query: 85 AQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGR 142
A CA L + D D FG+ + R + E + E ++ + + LG
Sbjct: 161 ASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTW 220
Query: 143 NSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ L +LLG DY + +RG+GP+ A +++K
Sbjct: 221 EQFVDLCILLGCDYCESIRGIGPKRAVELIK 251
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 149 (57.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 53/195 (27%), Positives = 91/195 (46%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EAK L +G+PC++ EAEAQCA L S D D + + R + E
Sbjct: 140 EEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLRHLTFSE 199
Query: 123 RGYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG- 176
+ +D IE K L + I L +LLG DY + ++G+G +A +++K G
Sbjct: 200 ARKM---PIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIKGIGQATAFKLIKEHGS 256
Query: 177 -DNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ-RETPFS 234
DN+V + I + + K + E W + ++ +N E+ N ++ +L+ +E
Sbjct: 257 LDNIV-EWIKNN------KTKYTLPENWPYD-EARQLFMNPEVT-NASEINLKWKEPDVD 307
Query: 235 QVIDAYSNPKCYSAD 249
+I+ K +S D
Sbjct: 308 GLIEFMVKQKGFSED 322
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 148 (57.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 50/189 (26%), Positives = 84/189 (44%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +G+P + EAEAQCA L S D D F A + R + E+
Sbjct: 141 EAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQ 200
Query: 124 GY--VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+ Y ++ L + L +LLG DY + +RG+GP A ++++ G L
Sbjct: 201 RKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYG---TL 257
Query: 182 QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQ-VIDAY 240
R E R+K E W ++ + + L+ E+ + G + L+ ++P + +I
Sbjct: 258 DRFVKEA----DRSKYPIPEDWPYE-DARRLFLDAEV-LPGEEIELKWKSPDADGIIQFL 311
Query: 241 SNPKCYSAD 249
K ++ D
Sbjct: 312 VKEKGFNED 320
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 145 (56.1 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 39/126 (30%), Positives = 56/126 (44%)
Query: 48 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 107
SS N GS F+ +E L +GVPC++ EAEA CA L + S D D
Sbjct: 99 SSQSPNTGSAFN---QECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTL 155
Query: 108 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
FG + R + + Y + + L + L +LLG DY + GLGP
Sbjct: 156 AFGGTVLLRQLNAKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSR 215
Query: 168 ACQIVK 173
A +++K
Sbjct: 216 ALKLIK 221
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 146 (56.5 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 39/127 (30%), Positives = 61/127 (48%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW--LG 121
+ K L +GVP +E EAEAQCA L G S D D FGA R +
Sbjct: 141 DCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 180
+ V+ +E+ I +L + I L +L G DY +RG+G ++A ++++ G +
Sbjct: 201 RKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 260
Query: 181 LQRIASE 187
L+ + E
Sbjct: 261 LENLNKE 267
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 143 (55.4 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 138 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 197
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ E + + ++LG + + L +LLGSDY + +RG+G + A +++
Sbjct: 198 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGAKRAVDLIQ 249
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 140 (54.3 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 33/110 (30%), Positives = 60/110 (54%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L L +GVP ++ EAEAQCA + + S D D G+ + R ++ E +
Sbjct: 144 KLLTL-MGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMDSLTLGSTVLLRRLFFSEAKK 202
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
++ +E+ + LG ++ I L++LLG DY ++G+GP+ A ++++
Sbjct: 203 MPILEFELQSVLEGLGLTQDEFIDLSILLGCDYCDSIKGIGPKRAIELIQ 252
Score = 45 (20.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 210 KEESLNQEI-NVNGTDHSLQRETPFSQVIDAYSNPKCYSAD 249
K +SL + I +++ + + L P+ +V + + NP AD
Sbjct: 253 KHKSLEEVIKHLDKSKYPLPEFFPYPEVRELFKNPNVIPAD 293
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/205 (25%), Positives = 88/205 (42%)
Query: 30 RLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCAL 89
+L + ++ + +N+DK S + + + +E K L +GVP +E EAEA CA
Sbjct: 109 KLLAQAQEAGEQENIDKFSKRLVKVTKQHN---EECKKLLSLMGVPYIEAPCEAEASCAA 165
Query: 90 LNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLIT 147
L + D D FG + R + E + E I + + I
Sbjct: 166 LVKAGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFID 225
Query: 148 LALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKC 207
L +LLG DY ++G+GP+ A ++K G ++ I L + K+ E W +K
Sbjct: 226 LCILLGCDYCGTIKGIGPKRAIDLIKQHGS---IEEI----LENIDPNKHPAPEDWLYK- 277
Query: 208 NNKEESLNQEINVNGTDHSLQRETP 232
+ L E+ V+GT L+ P
Sbjct: 278 EARGLFLEPEV-VDGTSVDLKWNEP 301
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 36/146 (24%), Positives = 69/146 (47%)
Query: 30 RLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCAL 89
+L +E + +N++K + + + + +E K L +G+P ++ EAEA CA
Sbjct: 109 KLLEAAEEAGEVENIEKFNKRLVKVTKQHN---EECKKLLSLMGIPYVDAPCEAEATCAA 165
Query: 90 LNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLIT 147
L + D D FG + R + E + E ++ + + +G +
Sbjct: 166 LVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVD 225
Query: 148 LALLLGSDYSQGVRGLGPESACQIVK 173
L +LLGSDY + +RG+GP+ A +++
Sbjct: 226 LCILLGSDYCETIRGIGPKRAIDLIR 251
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 139 (54.0 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 36/146 (24%), Positives = 69/146 (47%)
Query: 30 RLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCAL 89
+L +E + +N++K + + + + +E K L +G+P ++ EAEA CA
Sbjct: 109 KLLEAAEEAGEVENIEKFTKRLVKVTKQHN---EECKKLLTLMGIPYVDAPCEAEATCAA 165
Query: 90 LNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLIT 147
L + D D FG + R + E + E ++ + + +G +
Sbjct: 166 LVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVD 225
Query: 148 LALLLGSDYSQGVRGLGPESACQIVK 173
L +LLGSDY + +RG+GP+ A +++
Sbjct: 226 LCILLGSDYCETIRGIGPKRAIDLIR 251
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 138 (53.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 53/199 (26%), Positives = 87/199 (43%)
Query: 64 EAKAL-GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW--L 120
EAK L GL +G+P +E EAEAQCA L G + D D FG+ + R +
Sbjct: 140 EAKRLLGL-MGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMDALTFGSTVLLRHFLAPV 198
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ + + + ++ I L +LLG DY +RG+GP+ A ++++ N+
Sbjct: 199 AKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQ-HKNI- 256
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ I L + + K E W +K +E LN E+ +E VI
Sbjct: 257 -ETI----LENIDQNKYPPPEDWPYK-RARELFLNPEVTKPEEVELTWKEADVEGVIQFL 310
Query: 241 SNPKCYSADSEAVHRVLAQ 259
K ++ E + LA+
Sbjct: 311 CGEKNFN--EERIRNALAK 327
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 144 (55.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 40/104 (38%), Positives = 53/104 (50%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P +E EAEAQC L L DG S DSD++ FGA+ VYR ++ R E
Sbjct: 480 GIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHMFSKNRRVQRYGEQT 539
Query: 133 DIER---KLG-FGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
R KL R I++ALL G DY G+ +G A ++V
Sbjct: 540 TANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALELV 583
Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 13 RSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 52
+S +G + AI + R R + G+E +D K +K +R
Sbjct: 348 QSKSGMLEAI--ARKRIRQHYGTETVEDKKEEEKRKKEQR 385
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 142 (55.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 42/177 (23%), Positives = 80/177 (45%)
Query: 16 NGSIPAIKLSTYRRR---LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIK---EAKALG 69
+G+ P +K S +R E+ + K + +++ G K EAK L
Sbjct: 88 DGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTRKQNEEAKKLL 147
Query: 70 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-------- 121
+G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 148 TLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANATSNQNKN 207
Query: 122 ----ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+RGY++ ++ + + L + I +L G DY ++G+G ++A ++K
Sbjct: 208 KNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIK 264
Score = 38 (18.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 204 SFKCNN--KEESLNQEINVNGTDHSLQRETPFSQVIDAYSN 242
+ K N+ KE+S N N+ +H++ + + + SN
Sbjct: 592 TLKSNSPLKEDSPNSYNNIKNNNHTININSQINNHKEPISN 632
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 142 (55.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 42/177 (23%), Positives = 80/177 (45%)
Query: 16 NGSIPAIKLSTYRRR---LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIK---EAKALG 69
+G+ P +K S +R E+ + K + +++ G K EAK L
Sbjct: 88 DGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTRKQNEEAKKLL 147
Query: 70 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-------- 121
+G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 148 TLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANATSNQNKN 207
Query: 122 ----ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+RGY++ ++ + + L + I +L G DY ++G+G ++A ++K
Sbjct: 208 KNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYNLIK 264
Score = 38 (18.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 204 SFKCNN--KEESLNQEINVNGTDHSLQRETPFSQVIDAYSN 242
+ K N+ KE+S N N+ +H++ + + + SN
Sbjct: 592 TLKSNSPLKEDSPNSYNNIKNNNHTININSQINNHKEPISN 632
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 136 (52.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/165 (26%), Positives = 73/165 (44%)
Query: 28 RRRLN--SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 85
RR+ N G ++ ++ K + R++ + K KA S GV CL EA+A
Sbjct: 95 RRQANLLKGKQLLREGKVSEARECFSRSINITHAMAHKVIKA-ARSQGVDCLVAPYEADA 153
Query: 86 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRN 143
Q A LN + + DSD+ FG + V + G + + R+LG F
Sbjct: 154 QLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEE 213
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 188
+ +L G DY +RG+G AC++++ + +++ I G
Sbjct: 214 KFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIG 258
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 135 (52.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 43/165 (26%), Positives = 74/165 (44%)
Query: 28 RRRLN--SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 85
RR+ N G ++ ++ K + R++ + K KA +LGV CL EA+A
Sbjct: 95 RRQSNLLKGKQLLREGKVSEARECFTRSVNITHAMAHKVIKA-ARALGVDCLVAPYEADA 153
Query: 86 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRN 143
Q A LN + + DSD+ FG + V + G V + ++LG F
Sbjct: 154 QLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEE 213
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 188
+ +L G DY +RG+G AC++++ + +++ I G
Sbjct: 214 KFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIG 258
>UNIPROTKB|G4MVT4 [details] [associations]
symbol:MGG_01800 "Flap structure-specific endonuclease"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 EMBL:CM001232 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K15339 RefSeq:XP_003714807.1 ProteinModelPortal:G4MVT4
EnsemblFungi:MGG_01800T0 GeneID:2679379 KEGG:mgr:MGG_01800
Uniprot:G4MVT4
Length = 932
Score = 135 (52.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 40/118 (33%), Positives = 56/118 (47%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-- 122
AK + G E EAEA+CALL + D S D D +FG R+ W E
Sbjct: 108 AKRMIRLFGFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFGCTRTLRN-WSSEGV 166
Query: 123 RG-----YVVCYEMDDIERK-LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
RG +V Y+ I+ + G R ++ +AL+ G DY QGV G G + AC+ +
Sbjct: 167 RGSKEPTHVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVACEAAR 224
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 136 (52.9 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 43/165 (26%), Positives = 73/165 (44%)
Query: 28 RRRLN--SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 85
RR+ N G ++ ++ K + R++ + K KA S GV CL EA+A
Sbjct: 95 RRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKA-ARSQGVDCLVAPYEADA 153
Query: 86 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRN 143
Q A LN + + DSD+ FG + V + G + + R+LG F
Sbjct: 154 QLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEE 213
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 188
+ +L G DY +RG+G AC++++ + +++ I G
Sbjct: 214 KFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIG 258
Score = 44 (20.5 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 468 SPSPVQCRNVSRIREMSDQPINTIE--LSDSETEKSPE 503
+PSP + + R SD P + E +SD KS E
Sbjct: 621 TPSPSPSTALQQFRRKSDSPTSLPENNMSDVSQLKSEE 658
Score = 40 (19.1 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 184 IASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 232
++ LSF K+ K + EG K + E ++ VNG + TP
Sbjct: 431 LSQYSLSFTKKTKKNSSEG--NKSLSFSEVFVPDL-VNGPTNKKSVSTP 476
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 128 (50.1 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 75/293 (25%), Positives = 123/293 (41%)
Query: 19 IPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM-IKEAKALGL-----SL 72
+PA K T +RR +S + + L ++ + C+ + AL L S
Sbjct: 82 LPA-KALTEKRRRDSRKQSKERAAELLRLGRIEEARSHMRRCVDVTHDMALRLIRECRSR 140
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE-- 130
V C+ EA+AQ A LN + + DSD+ LFGA+ + + L G +V E
Sbjct: 141 NVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGAKNIIFKLDLNGSGLLVEAEKL 200
Query: 131 ---MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ-IVKSVGDNVVLQRIAS 186
M E K F + + +L G DY + G+G AC+ I+K+ +++ RIA
Sbjct: 201 HLAMGCTEEKYHFDK--FRRMCILSGCDYLDSLPGIGLAKACKFILKTEQEDM---RIAL 255
Query: 187 EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINV-NGTDHSLQRETPFS--QVIDAY-SN 242
+ + +N + + + K E+ + + + N + +QR + + Y SN
Sbjct: 256 KKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCALEDYETDERYCSN 315
Query: 243 PKCYSADSE-AVHRVLAQ-HLFQHARLHQVCAQFFQWPPEKTDEYILPKIAER 293
DSE A+H L + F RL W PEK + PK +R
Sbjct: 316 AGTLLEDSEQALHLALGNLNPFSMKRLDS-------WTPEKA--WPTPKNVKR 359
Score = 47 (21.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 470 SPVQCRNVSRIREMSDQPINTIELSDSETEKSPELER 506
SPV C N S +R +S + + ++ ++ +K L+R
Sbjct: 470 SPVVCENASLLRLLSPKKASPLD-GEAGVKKVDSLKR 505
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 48/191 (25%), Positives = 87/191 (45%)
Query: 28 RRRLN--SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 85
RR+ N G ++ ++ K + R++ S M + + GV C+ EA+A
Sbjct: 95 RRQANLQKGKQLLREGKITEARECFTRSVNITPS-MAHDVIRAARTRGVDCVVAPYEADA 153
Query: 86 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIER--KLG--FG 141
Q A LN + + DSD+ FG + V + + ++G + E + R LG F
Sbjct: 154 QLAFLNKSDIAQAVITEDSDLLAFGCKKVI--LKMDKQGNGLEIEQCHLGRCKSLGNIFT 211
Query: 142 RNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKE 201
+ +L G DY Q + G+G AC++++ + +L+ I G ++K + +E
Sbjct: 212 EEKFRYMCILSGCDYLQSLYGIGLGKACKLLRMANNPDILKVIKKMG-QYLKMDISVPEE 270
Query: 202 ---GWSFKCNN 209
G++ K NN
Sbjct: 271 YIEGFT-KANN 280
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 122 (48.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 33/132 (25%), Positives = 59/132 (44%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E + L +G+P + EAEAQCA+L S D D F + + R + E
Sbjct: 139 EECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSE 198
Query: 123 RGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NV 179
E+ D + L R + L +LLG DY + +GP +A ++++ G
Sbjct: 199 ARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLET 258
Query: 180 VLQRIASEGLSF 191
+++++ L +
Sbjct: 259 IVEKMKKGELKY 270
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD 249
E++ +++ +++ + PF D + NP + AD
Sbjct: 257 ETIVEKMKKGELKYTVPEDWPFEDARDLFFNPAVHPAD 294
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 135 (52.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 43/165 (26%), Positives = 74/165 (44%)
Query: 28 RRRLN--SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 85
RR+ N G ++ ++ K + R++ + K KA +LGV CL EA+A
Sbjct: 95 RRQSNLLKGKQLLREGKVSEARDCFARSINITHAMAHKVIKA-ARALGVDCLVAPYEADA 153
Query: 86 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRN 143
Q A LN + + DSD+ FG + V + G V + ++LG F
Sbjct: 154 QLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEE 213
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 188
+ +L G DY +RG+G AC++++ + +++ I G
Sbjct: 214 KFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIG 258
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 468 SPSPVQCRNVSRIREMSDQPINTIELSDSETEK 500
+PSP + + R SD P E S T++
Sbjct: 612 TPSPSASTTLQQFRRKSDPPACLPEASAVVTDR 644
>ASPGD|ASPL0000035217 [details] [associations]
symbol:AN3186 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00485
GO:GO:0003677 GO:GO:0006281 EMBL:BN001306 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000052 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K15339 RefSeq:XP_660790.1
ProteinModelPortal:Q5B8E4 EnsemblFungi:CADANIAT00009883
GeneID:2874333 KEGG:ani:AN3186.2 HOGENOM:HOG000198967
OrthoDB:EOG4QZBVF Uniprot:Q5B8E4
Length = 822
Score = 127 (49.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 56/226 (24%), Positives = 92/226 (40%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGAR-TVY---RDIWLGERG--YVVCYEMDD-I 134
EAEA+C+ L + + D S+D D +FG+ TV ++ G G +V Y M D
Sbjct: 123 EAEAECSRLQMAGVVDAVMSNDVDALMFGSGFTVMNFSKEAGSGAGGATHVTSYRMGDGA 182
Query: 135 ERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK 193
+ + R +I A+L G DY GV G + A +I + +L+ + ++G
Sbjct: 183 DSNVKLDRPGMILFAMLSGGDYLPSGVPKCGSKLAAEIATAGFGKDLLEALEADGAELET 242
Query: 194 RAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR--ET-PFSQVIDAYSNPKCYSADS 250
R N +E ++ E Q T H R ET P ++ Y+ P S
Sbjct: 243 RL-NEWRERLQYELEENESGYFQ------TKHKAVRIPETFPDRTILSYYAKPVVSSEQQ 295
Query: 251 EAVHRVLAQHLFQH----ARLHQVCAQFFQWPPEKTDEYILPKIAE 292
R ++ + + L Q A F+W ++ +AE
Sbjct: 296 VESLRYRLRNAWDREVNVSELRQFTAYAFEWNYRSGARKVIRLLAE 341
Score = 44 (20.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 468 SPSPVQCRNVS-----RIREMSDQPINTIELSDSETEKSPELERKAR 509
S SPV+ R + R ++ + IE+SD+E E +P + + R
Sbjct: 590 SGSPVKRRPATTPPNARRAAITSGSVEVIEISDTEEEYTPPVAPRIR 636
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 124 (48.7 bits), Expect = 0.00033, P = 0.00033
Identities = 39/165 (23%), Positives = 71/165 (43%)
Query: 28 RRRLN--SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 85
+R+ N G ++ ++ K + R++ + M E + GV C+ EA+A
Sbjct: 95 KRQANLLKGKQLFREGKLSEARDCFARSVNVTHA-MAHEVIKAARARGVDCIVAPYEADA 153
Query: 86 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRN 143
Q A LN + + DSD+ FG + V+ I G + ++LG F
Sbjct: 154 QLAYLNKTGVVQAIITEDSDLLAFGCKKVFLKIDKFGNGLEIDQARLGNCKQLGNIFTEE 213
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 188
+ +L G DY + G+G AC+++K + +++ I G
Sbjct: 214 KFRYMCILSGCDYLSSIHGIGLAKACKLLKLANNPDIIKVIKKMG 258
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 121 (47.7 bits), Expect = 0.00063, P = 0.00063
Identities = 39/165 (23%), Positives = 70/165 (42%)
Query: 31 LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL 90
L G ++ ++ K + R++ S M E S GV + EA++Q A L
Sbjct: 100 LQKGKQLLREGKLAEARECFSRSVNIT-SSMAHEVIKAARSEGVDYIVAPYEADSQLAYL 158
Query: 91 NLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITL 148
N + + DSD+ FG + V + G + + R LG F +
Sbjct: 159 NKNDFAEAIITEDSDLLAFGCKKVLLKMDKFGNGLEIDQARFGMCRSLGDVFTEEKFRYM 218
Query: 149 ALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK 193
+L G DY + G+G AC+++K V +N + ++ + ++K
Sbjct: 219 CILSGCDYLPSIHGIGLAKACKLLK-VANNPDITKVIQKIGQYLK 262
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 523 495 0.00083 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 66
No. of states in DFA: 619 (66 KB)
Total size of DFA: 288 KB (2151 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.14u 0.10s 40.24t Elapsed: 00:00:07
Total cpu time: 40.15u 0.10s 40.25t Elapsed: 00:00:07
Start: Sat May 11 12:00:36 2013 End: Sat May 11 12:00:43 2013