BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009898
(523 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359490377|ref|XP_002263340.2| PREDICTED: flap endonuclease GEN-like 2-like [Vitis vinifera]
gi|297741051|emb|CBI31782.3| unnamed protein product [Vitis vinifera]
Length = 565
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 316/513 (61%), Positives = 396/513 (77%), Gaps = 26/513 (5%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 60
+++ + + +LL +GSIPAIKL+TYRRRLNSG+EVT+D+ N + SLRRNMGSEFSC
Sbjct: 61 LRALIALNCSLLFVTDGSIPAIKLATYRRRLNSGTEVTRDETNSHNVPSLRRNMGSEFSC 120
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKEAK LGL+LG+PCL+G+EEAEAQCALLN ESLCDGCF+SDSD+FLFGARTVYRDI L
Sbjct: 121 MIKEAKVLGLALGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTVYRDICL 180
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
GE GYVVCYEM DIE LGFGRNSLITLALLLGSDYSQGV G GPESACQIVKSVG+ VV
Sbjct: 181 GEGGYVVCYEMADIESTLGFGRNSLITLALLLGSDYSQGVHGFGPESACQIVKSVGEEVV 240
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L++IA EG+SF K++K S+K+G KCN+KE + E+N+NG++HS QRE F +VIDAY
Sbjct: 241 LKKIALEGISFAKKSKGSRKQGQVLKCNDKENCSDHEMNINGSEHSSQRE--FLRVIDAY 298
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 300
PKC+SADS+AVHR LA FQ ++CAQ F+WPPEKTDEYILPKIAERDLRRFAN
Sbjct: 299 LKPKCHSADSDAVHRALALLPFQRTEAQKICAQLFEWPPEKTDEYILPKIAERDLRRFAN 358
Query: 301 LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 360
LR+ + LG+ PL ++PVKCPI+GIIK RK+QG+ECFEVSWEE GLKSS++PA+L++S
Sbjct: 359 LRSTSSNLGIHFPLHEIPVKCPISGIIKHRKVQGRECFEVSWEEFDGLKSSIIPAELVKS 418
Query: 361 ACPEKIVEFEERRALRQ--------PKKSKPKSSAAEIDQKLQALMLDIESENSTSSNAS 412
ACPEKIVEFE R+ + PKKS ++ AEID++LQ L+LDIES ++ N S
Sbjct: 419 ACPEKIVEFEGRKPQEKKQNHRKPRPKKSNNRTPLAEIDKQLQNLLLDIESGGNSFQNVS 478
Query: 413 FSSRVVMSEDWTAATEIDLT---RRQDLLLDAESKS-----NANMSCYPTGSTAAKAEII 464
FSS + S+ T+ID T + Q +LLD ES+S N + C+ G A+ +I
Sbjct: 479 FSSSMTPSK-----TQIDATKAAKTQYMLLDTESESDNDNHNEAIICHQNGRCGAEI-VI 532
Query: 465 DLVSPSP-VQCRNVSRIREMSD-QPINTIELSD 495
DL+SPSP ++ R VS+ ++ ++ Q I+ I+LSD
Sbjct: 533 DLLSPSPAIRARKVSKCQQGNNGQQIDVIDLSD 565
>gi|255539481|ref|XP_002510805.1| conserved hypothetical protein [Ricinus communis]
gi|223549920|gb|EEF51407.1| conserved hypothetical protein [Ricinus communis]
Length = 586
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 325/528 (61%), Positives = 398/528 (75%), Gaps = 21/528 (3%)
Query: 4 YLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVT-QDDKNLDKMSSLRRNMGSEFSCMI 62
YL Y L+ ++GSIPAIKL+TYR+RLNSG EVT QD+ N+ + SL RNMGSEFS MI
Sbjct: 66 YLCYCCCLI--VDGSIPAIKLATYRQRLNSGLEVTTQDETNMKEACSLPRNMGSEFSRMI 123
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
KEAK LGL+LG+ CL+ +EEAEAQCALLN ESLCDGCFSSDSD+FLFGARTVYRDI LG+
Sbjct: 124 KEAKILGLALGISCLDSLEEAEAQCALLNSESLCDGCFSSDSDVFLFGARTVYRDICLGD 183
Query: 123 RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQ 182
G+VVCYEM DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD+ VLQ
Sbjct: 184 GGHVVCYEMADIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDHNVLQ 243
Query: 183 RIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSN 242
+IAS GLSF K+ K SKK+ + +S E NVNG+D +R+ F QVIDAY
Sbjct: 244 QIASGGLSFAKKTKASKKQ-------TQLKSFGPESNVNGSDKISERQNQFLQVIDAYLK 296
Query: 243 PKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLR 302
PKC+SADS+ V+RVLAQ FQ A+L Q+CA+FF W E TDEYILPKIAERDLRRF+NLR
Sbjct: 297 PKCHSADSDTVYRVLAQPPFQCAKLQQLCARFFGWSSEITDEYILPKIAERDLRRFSNLR 356
Query: 303 ANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESAC 362
+ + LGV+L L ++PVKCP++GIIK RK+QG++CFEV WE GL++S+VPADL+ESAC
Sbjct: 357 STSSKLGVNLTLHEIPVKCPVSGIIKHRKVQGRKCFEVLWEGFDGLETSIVPADLVESAC 416
Query: 363 PEKIVEFEERRALR--------QPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFS 414
PEKI EFEE+RALR + KK++ ++ AE+D L+ L+LDIESE++T N SF
Sbjct: 417 PEKIAEFEEKRALRKKQNQRTLKTKKAENITTVAEVDLGLKNLLLDIESESNTVFNDSFP 476
Query: 415 SRVVMSEDWTAATEIDLTRRQDLLLDAESK--SNANMSCYPTGSTAAKAEIIDLVSPS-P 471
S SED T A + T + L++++ S +A + + + K +IIDL+SPS P
Sbjct: 477 SEASTSEDSTTAVAVHCTNQDPLIVESRSDRGHDATVPSFHASPSLPKIDIIDLLSPSPP 536
Query: 472 VQCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 519
Q R V R +E SD+ I+ I+LSDSETE S E RKAR LR F+A IR
Sbjct: 537 PQFRMVPRCQEASDKCIDVIDLSDSETEMSAEHARKARELRSFLAGIR 584
>gi|224136982|ref|XP_002322464.1| predicted protein [Populus trichocarpa]
gi|222869460|gb|EEF06591.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 313/532 (58%), Positives = 379/532 (71%), Gaps = 61/532 (11%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 60
+++ + + +L+ +GSIPAIKL+TYRRRLN G EVTQD+ N K SLRRNMGSEFSC
Sbjct: 62 LRALIALNCSLIFVADGSIPAIKLATYRRRLNLGLEVTQDETNSQKACSLRRNMGSEFSC 121
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKEAK +GL+LG+PCL+ +EEAEAQCALLN ESLCDGCFSSDSD+FLFGARTVYRDI L
Sbjct: 122 MIKEAKDIGLALGIPCLDSIEEAEAQCALLNTESLCDGCFSSDSDVFLFGARTVYRDICL 181
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
GE G+VVCYEM+++ERKLGFGRNSLITLAL+LGSDYS GV GLGPESACQIVKS+GD+ V
Sbjct: 182 GE-GHVVCYEMEEVERKLGFGRNSLITLALILGSDYSPGVHGLGPESACQIVKSIGDSNV 240
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
LQ+IASEGL F K+ K SKK+ S K N SL+ EI+ NG + L +T +A
Sbjct: 241 LQKIASEGLPFAKKIKTSKKQMRSKKTN----SLDSEIHFNG-KYLLCCKTLKCLRQEAI 295
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 300
+ K DS+A RVL+QH FQ +L +CAQFF WPPEKTDEY LPKIAERDLRRFAN
Sbjct: 296 TIQKGRMTDSDAACRVLSQHPFQRLKLQGICAQFFGWPPEKTDEYTLPKIAERDLRRFAN 355
Query: 301 LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 360
LR+ + LGV+LPLQK+PVKCP++G++K RK+QG ECFEV WE GLK+S+VPADL+ES
Sbjct: 356 LRSTSSELGVNLPLQKIPVKCPVSGVVKQRKVQGTECFEVLWEGFDGLKTSIVPADLLES 415
Query: 361 ACPEKIVEFEERRAL------RQP--KKSKPKSSAAEIDQKLQALMLDIESENSTSSNAS 412
ACPEKI EFEE+ AL R+P KKS + + AEID KLQ L+LDIE ++T+ + S
Sbjct: 416 ACPEKIAEFEEKTALGKKQNQRKPGSKKSGNRLAMAEIDLKLQTLLLDIEPGSNTACSTS 475
Query: 413 FSSRVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSPV 472
F + E+IDL SPSPV
Sbjct: 476 F----------------------------------------------QYEVIDLCSPSPV 489
Query: 473 -QCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIRDDIS 523
+ R VSR + ++DQ I+LS+SE E SPE RKARALRMFIASIRDD+S
Sbjct: 490 ARTRTVSRCQRVNDQHSEVIDLSESENEMSPEHARKARALRMFIASIRDDMS 541
>gi|449446177|ref|XP_004140848.1| PREDICTED: flap endonuclease GEN-like 2-like [Cucumis sativus]
Length = 563
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/526 (56%), Positives = 387/526 (73%), Gaps = 32/526 (6%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 60
+++ + + +L+ +GSIP IKLSTYRRRLN+G+EV Q D N ++ SL+RN GSEFS
Sbjct: 61 LRTLIALNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQTDANPQQICSLKRNKGSEFSL 120
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKEA+ALGL+LG+PCL+ VEEAEAQCALLN E LCDGCF+SDSD FLFGARTVYRDI L
Sbjct: 121 MIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDICL 180
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
G+ G+VVCYEMDDIE +LGFGRNS+IT ALLLGSDYSQGV G+G ESACQ+VK+VGD V
Sbjct: 181 GDSGHVVCYEMDDIETRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQLVKAVGDGAV 240
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
LQ+I SEGL+ K+ +NSKK+G + +G H + + FS+VIDAY
Sbjct: 241 LQKITSEGLALAKKGENSKKQG---------------LPKSGHGHYMLKCDEFSEVIDAY 285
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 300
PKC+SADSEAV RVL QH FQH +L Q+CA+FF+W PEKTDE ILPKIAERDLRRFAN
Sbjct: 286 LKPKCHSADSEAVTRVLDQHPFQHVKLQQICAEFFEWSPEKTDENILPKIAERDLRRFAN 345
Query: 301 LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 360
+R+ T LG ++PLQ++PV CPI+GI+K RK+QG EC+EVSW ++ GL SVV ADL++
Sbjct: 346 IRSRTSELGFNIPLQEIPVSCPISGIVKHRKVQGNECYEVSW-KNIGLNLSVVSADLLQR 404
Query: 361 ACPEKIVEFEERRA--LRQPK-KSKPKSSA---AEIDQKLQALMLDIESENSTSSNASFS 414
ACPE I+EFEE+RA +Q K K+K K SA AEID++L+ L+L+IESE+ N S
Sbjct: 405 ACPEMIIEFEEKRADGKKQNKGKTKTKKSAAVMAEIDKRLKTLLLEIESESRVVHNISH- 463
Query: 415 SRVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSP-VQ 473
V + T+ T + Q++ L+ E + + + + E+IDL+SPSP +Q
Sbjct: 464 ---VPIDSKTSGTGVH-ELNQEVFLNIEPI----IVDHARSCSTKRIEVIDLLSPSPAIQ 515
Query: 474 CRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 519
RNVS+ ++ + Q I+ I+LSD+E ++SPE ERKAR LR F+AS++
Sbjct: 516 TRNVSKFQQKTSQKIDVIDLSDTEIDQSPEHERKARELRSFLASLK 561
>gi|357498397|ref|XP_003619487.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|355494502|gb|AES75705.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 571
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/521 (57%), Positives = 374/521 (71%), Gaps = 40/521 (7%)
Query: 16 NGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVP 75
+GSIPAIKLSTYRRRLN+G EV Q + NL K +SLRRN+GSEFSCMI EAK LG++LGV
Sbjct: 76 DGSIPAIKLSTYRRRLNNGKEVAQKETNLQKTTSLRRNLGSEFSCMISEAKILGMALGVS 135
Query: 76 CLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIE 135
CL G+EEAEAQCALLN ESLCDGCFSSDSDIFLFGARTVYRDI LG+ GYVVCYEM DIE
Sbjct: 136 CLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIE 195
Query: 136 RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRA 195
RKLGFGR+SLI L+LLLGSDY GV GLGP+SACQIVKS+GD VL++ ASEGL +VK+
Sbjct: 196 RKLGFGRDSLICLSLLLGSDYYPGVHGLGPDSACQIVKSIGDKFVLKKFASEGLGWVKKR 255
Query: 196 KNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHR 255
K G + + R+ QVIDAY PKC+SADSE + +
Sbjct: 256 K-------------------------GGQNKIGRDDTILQVIDAYLKPKCHSADSEFLLK 290
Query: 256 VLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQ 315
LA + FQ +LH +CA F+WP E+TD YILP IAERDLRRFANLR + LG++LPL
Sbjct: 291 ALATYPFQRTKLHHICAVSFEWPSERTDGYILPCIAERDLRRFANLRLTSSELGLNLPLH 350
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRAL 375
++PVKCP++ IIKSRK QG+EC+EVSW++ GL++S+VPADLIESACPEKI EFEE++AL
Sbjct: 351 EIPVKCPVSEIIKSRKAQGRECYEVSWKDMDGLETSIVPADLIESACPEKISEFEEKKAL 410
Query: 376 RQ--------PKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAAT 427
R+ PKK + SS AE+D KLQ L+LD ++ T+ +AS SS ++ E+ T+
Sbjct: 411 RKKQNVQKRRPKKKETTSSLAELDLKLQNLLLDDNLQDDTNHSASDSSGRIL-EETTSTA 469
Query: 428 EIDLTRRQDLLLDAESKSN------ANMSCYPTGSTAAKAEIIDLVSPSPVQCRNVSRIR 481
E DL +L + + N +N+S S+ K +IDL+SPSP++ N S+
Sbjct: 470 EDDLNTENMMLSHDDIEYNEWIQNISNISSNDVVSSKDKNVVIDLLSPSPLKPSNSSKFH 529
Query: 482 EMSDQPINTIELSDSETEKSPELERKARALRMFIASIRDDI 522
SDQ I+ I LSDSE E SPE ++KA+ LRMF+ASIR++I
Sbjct: 530 PSSDQNIDVINLSDSENEVSPEHKQKAKELRMFLASIRNEI 570
>gi|356559829|ref|XP_003548199.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 588
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 297/543 (54%), Positives = 378/543 (69%), Gaps = 37/543 (6%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEV--TQDDKNLDKMSSLRRNMGSEF 58
+++ + + +L+ +G+IPAIKLSTYRRRLN G EV Q++ NL K +SL+RNMGSEF
Sbjct: 61 LRALIALNCSLIFVSDGAIPAIKLSTYRRRLNVGKEVQVAQNETNLQKATSLQRNMGSEF 120
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
SCMIKEAK LG++LG+ CL G+EEAEAQCALLN ESLCDGCFSSDSDIFLFGARTVYRDI
Sbjct: 121 SCMIKEAKVLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDI 180
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
LG+ GYVVCYEM DIERKLGFGR+SLI L+LLLGSDY QGV GLGPESACQIVKS+GD
Sbjct: 181 CLGDGGYVVCYEMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDK 240
Query: 179 VVLQRIASEGLSFVKRAKN---------SKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
+L++ ASEGL +VK+ K + C N L+
Sbjct: 241 YILKKFASEGLGWVKKRKGIPSILHSNLIILILILYSCKN----------------DLRP 284
Query: 230 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 289
+ QVI+AY PKC+ ADS+ VH+ LAQ+ FQ +L Q+C FF+WP EKTD YILP
Sbjct: 285 DDNILQVINAYMKPKCHQADSDIVHKALAQYPFQRTKLQQICVGFFEWPSEKTDGYILPN 344
Query: 290 IAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLK 349
IAER+LRRFANLR + +G++LPL ++PVKCP++ IIKSR++QG+EC+EVSWE GL+
Sbjct: 345 IAERNLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLE 404
Query: 350 SSVVPADLIESACPEKIVEFEERRAL--------RQPKKSKPKSSAAEIDQKLQALMLDI 401
+S+VPADLIESAC EKI+EFEER+A R+PKK + SS AE+D KLQ L+LDI
Sbjct: 405 TSIVPADLIESACREKILEFEERKAQRKKQNIQKRKPKKKETNSSVAELDLKLQNLLLDI 464
Query: 402 ESENSTSSNASFSS-RVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAK 460
+ + NAS SS R+ A +++ T L D E + S+ K
Sbjct: 465 NLRDEANFNASDSSGRISRITTDMAEADLNTTDLLPLSHDIEHTGLIQNTSSEVVSSIDK 524
Query: 461 AEIIDLVSPSPVQCRNV-SRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 519
EIIDL+SPSP + N+ S+ ++ SDQ I I LSDSE + S E ++KA+ LR+F+ASIR
Sbjct: 525 NEIIDLLSPSPPKKSNLFSKCQQSSDQHIEVINLSDSENDMSVERKQKAKELRLFLASIR 584
Query: 520 DDI 522
++I
Sbjct: 585 NEI 587
>gi|186510820|ref|NP_001118795.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|166221584|sp|Q9M2Z3.2|GENL2_ARATH RecName: Full=Flap endonuclease GEN-like 2
gi|332644951|gb|AEE78472.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 600
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 279/559 (49%), Positives = 374/559 (66%), Gaps = 51/559 (9%)
Query: 1 MKSYLHYSSALLRSLN--------GSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 52
++ + H AL+ +LN G+IP IK+ TY+RRL + E+ D K +SL+R
Sbjct: 54 LRGFFHRLRALI-ALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKR 112
Query: 53 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 112
NMGSEFSC+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFS DSDIFLFGA+
Sbjct: 113 NMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAK 172
Query: 113 TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
TVYR+I LGE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E AC++V
Sbjct: 173 TVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELV 232
Query: 173 KSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 232
+S+GDNV+L+++ASEGLSF ++ + SKK+ C+ K + +NG + +R
Sbjct: 233 RSIGDNVILEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GTLPLVVINGNNRDPERLEE 290
Query: 233 FSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292
QVIDA+ NPKC+ ADS V R LA+ FQ +L ++C QFF+WPPEKTDEYILPK+AE
Sbjct: 291 IKQVIDAFMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAE 350
Query: 293 RDLRRFANLRANTLALGVDLPLQK--VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKS 350
R+LRRFANL++ + + V+LPL K +P KCP++ IIK+RK+QG+ECFEVSW + GL+S
Sbjct: 351 RNLRRFANLQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLES 410
Query: 351 SVVPADLIESACPEKIVEFEERRALRQPKK---------SKPKSSAAEIDQKLQALMLDI 401
S+VPADL+E ACPEKI+EF+E+ A ++ K S P S++ ++ L+ LD+
Sbjct: 411 SIVPADLVERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDL 470
Query: 402 ESENSTSSNASFSSRVVMSEDWTAATEIDLTRRQDL-LLDAESKSNAN------------ 448
NST S SR + E + + + L L+D+ + N N
Sbjct: 471 ---NST----SLVSRSTLEEAEQENEQQNSKKHDYLRLIDSPDRENCNNAWSNRDRLGVG 523
Query: 449 MSCYPTGSTAAKAEIIDLVSPSP-VQCRNVSRI---REMSDQPINT-IELSDSETEKSPE 503
MS +P + E+IDL+SP P + R+VSR ++ D + T IELSDSET+ E
Sbjct: 524 MSSFP---LYPETEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSETDDE-E 579
Query: 504 LERKARALRMFIASIRDDI 522
+KAR LR+F+ +IR DI
Sbjct: 580 HCKKARELRIFLQNIRKDI 598
>gi|297816098|ref|XP_002875932.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
gi|297321770|gb|EFH52191.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/554 (49%), Positives = 368/554 (66%), Gaps = 48/554 (8%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 60
+++ + + +++ +G+IP IK+ TYRRRL + EV D K +SL+RNMGSEFSC
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYRRRLKARFEVADDGVEPSKETSLKRNMGSEFSC 120
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFSSDSDIFLFGA+TVYR+I L
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSSDSDIFLFGAKTVYREICL 180
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
GE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E AC++V+S+G+NV+
Sbjct: 181 GEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGENVI 240
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L+++ASEGL+F ++ + SKK+ C+ K + VNG + + QVIDA+
Sbjct: 241 LEKVASEGLAFAEKPRKSKKQVRPSVCSKK--GTLPLVVVNGNNREPEGLEQIKQVIDAF 298
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 300
+PKC+ ADS V R LA+ FQ +L ++C Q F+WPPEKTDEYILPK+AER+LRRFA
Sbjct: 299 MDPKCHQADSATVCRALAEFSFQRTKLQEICHQLFEWPPEKTDEYILPKVAERNLRRFAI 358
Query: 301 LRANTLALG-VDLPLQ-KVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 358
L +L + LQ ++P KCP++ IIK+RK+QG+ECFEVSW + GL++S+VPADL+
Sbjct: 359 LHKVPFSLARKKILLQPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLETSIVPADLV 418
Query: 359 ESACPEKIVEFEERRALRQ--------------PKKSKPKSSAAEIDQKLQALMLDIESE 404
E ACPEKI+EF+E+ A ++ P KS SS AE+ +LQ L L
Sbjct: 419 ERACPEKIIEFKEKMAAKKKKPKPKQKHKETSSPTKS---SSLAELSLELQHLDL----- 470
Query: 405 NSTSSNASFSSRVVMSEDWTAATEIDLTRRQDL--LLDAESKSNAN--------MSCYPT 454
NST S +R + E+ E+ +++ D L+D+ + N N P+
Sbjct: 471 NST----SLVTRSTV-EEAEQENEVQNSKKHDYLCLIDSPDRENCNNAWSTRDRFGVGPS 525
Query: 455 G-STAAKAEIIDLVSPSP-VQCRNVSRIRE---MSDQPINT-IELSDSETEKSPELERKA 508
S + E+IDL+SP P + R+VSR + D + T IELSDSET+ E +KA
Sbjct: 526 SLSLYLETEVIDLISPCPEARSRSVSRSHQEQKRHDHQLETVIELSDSETDDE-EHCKKA 584
Query: 509 RALRMFIASIRDDI 522
R LR+F+ +IR DI
Sbjct: 585 RELRIFLENIRKDI 598
>gi|186510818|ref|NP_190459.2| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|332644950|gb|AEE78471.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 536
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 263/518 (50%), Positives = 350/518 (67%), Gaps = 44/518 (8%)
Query: 35 SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 94
S++ D K +SL+RNMGSEFSC+IKEAK + +LG+ CL+G+EEAEAQCALLN ES
Sbjct: 31 SQIADDGVEPSKETSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSES 90
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154
LCD CFS DSDIFLFGA+TVYR+I LGE GYVVCYEMDDI++KLG GRNSLI LALLLGS
Sbjct: 91 LCDACFSFDSDIFLFGAKTVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGS 150
Query: 155 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESL 214
DYSQGVRGL E AC++V+S+GDNV+L+++ASEGLSF ++ + SKK+ C+ K
Sbjct: 151 DYSQGVRGLRQEKACELVRSIGDNVILEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GT 208
Query: 215 NQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQF 274
+ +NG + +R QVIDA+ NPKC+ ADS V R LA+ FQ +L ++C QF
Sbjct: 209 LPLVVINGNNRDPERLEEIKQVIDAFMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQF 268
Query: 275 FQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQK--VPVKCPITGIIKSRKL 332
F+WPPEKTDEYILPK+AER+LRRFANL++ + + V+LPL K +P KCP++ IIK+RK+
Sbjct: 269 FEWPPEKTDEYILPKVAERNLRRFANLQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKV 328
Query: 333 QGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEF---------EERRALRQPKKSKP 383
QG+ECFEVSW + GL+SS+VPADL+E ACPEKI+EF + + +Q + S P
Sbjct: 329 QGRECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSP 388
Query: 384 KSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAATEIDLTRRQDL--LLDA 441
S++ ++ L+ LD+ NST S SR + E E +++ D L+D+
Sbjct: 389 TKSSSLVELSLELQHLDL---NST----SLVSRSTLEEA-EQENEQQNSKKHDYLRLIDS 440
Query: 442 ESKSNAN------------MSCYPTGSTAAKAEIIDLVSPSP-VQCRNVSRI---REMSD 485
+ N N MS +P + E+IDL+SP P + R+VSR ++ D
Sbjct: 441 PDRENCNNAWSNRDRLGVGMSSFP---LYPETEVIDLISPCPEARSRSVSRSYQEQKSHD 497
Query: 486 QPINT-IELSDSETEKSPELERKARALRMFIASIRDDI 522
+ T IELSDSET+ E +KAR LR+F+ +IR DI
Sbjct: 498 HQLETVIELSDSETDDE-EHCKKARELRIFLQNIRKDI 534
>gi|115474331|ref|NP_001060762.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|75162699|sp|Q8W5R1.1|GENL2_ORYSJ RecName: Full=Flap endonuclease GEN-like 2; AltName: Full=OsSEND-1;
AltName: Full=Single-strand DNA endonuclease 1
gi|16923283|dbj|BAB72003.1| single-strand DNA endonuclease-1 [Oryza sativa Japonica Group]
gi|113622731|dbj|BAF22676.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|222639760|gb|EEE67892.1| hypothetical protein OsJ_25722 [Oryza sativa Japonica Group]
Length = 641
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/445 (51%), Positives = 313/445 (70%), Gaps = 23/445 (5%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQ--DDKNLDKMSSLRRNMGSEF 58
+++ L + LL +G+IP++KL+TYRRRL S S + D N SLRRN GSEF
Sbjct: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF 120
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
SCMIKEAK LG++LG+PCL+G+EEAEAQCA L+LESLCDGCF+SDSD FLFGARTVYRD+
Sbjct: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
++GE GYV+CYEM+DIE+ LGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKSVGDN
Sbjct: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240
Query: 179 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 238
++L +I S G+ ++ K K G NK + + + + + + F VI+
Sbjct: 241 LILDQILSNGVKATRKCKG-KNSG------NKVDDMCPKASSCEVGMTQDSDGQFRDVIN 293
Query: 239 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 298
AY PKC+S DSEAV RV QH F +L ++C ++F W PEKTD+YILPKIAER+LRRF
Sbjct: 294 AYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRF 353
Query: 299 ANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 358
++LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+EVSW GL+ SVVP DL+
Sbjct: 354 SDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLV 413
Query: 359 ESACPEKIVEF---------EERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSS 409
+SACPEKI EF ++RRA +PKKS +++ ++D++LQ L+L IE+++
Sbjct: 414 KSACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDVDEQLQELLLGIEADSGGIL 470
Query: 410 NASFSSRVVMSEDWTAATE--IDLT 432
A+ S ++ +T A E +DL+
Sbjct: 471 GATASVCQTLTAAYTVAVEDVVDLS 495
>gi|357139431|ref|XP_003571285.1| PREDICTED: flap endonuclease GEN-like 2-like [Brachypodium
distachyon]
Length = 706
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/420 (54%), Positives = 303/420 (72%), Gaps = 26/420 (6%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 60
+++ L + +L+ +G+IP++KL+TYRRRL S SE T D+ N ++SLRRN GSEFS
Sbjct: 61 IRALLALNCSLIFVTDGAIPSVKLATYRRRLGSNSEATHDETNPQPLTSLRRNKGSEFSR 120
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKEAK LGL+LG+PCL+GVEE EAQCALLNL SLC+GCF+SDSD FLFGARTVYRD+++
Sbjct: 121 MIKEAKNLGLALGIPCLDGVEEGEAQCALLNLTSLCEGCFTSDSDAFLFGARTVYRDVFI 180
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
GE GYV+CYEM+DIE+KLGFGR SLI+LALLLG DYS GVRG GPE+AC++VKS+G++ +
Sbjct: 181 GEGGYVICYEMEDIEKKLGFGRKSLISLALLLGCDYSNGVRGFGPEAACRLVKSMGEDTI 240
Query: 181 LQRIASEGLSFVKRAK------NSKKEG-WSFKCNNKEESLNQEINVNGTDHSLQRETPF 233
L +I S+G+ ++ K N KK G S + ++ E +++Q+ F
Sbjct: 241 LDQILSDGVKATRKCKAKMVGINKKKVGDVSTEASSSEAAMSQDSGDQ-----------F 289
Query: 234 SQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAER 293
+ I A+ PKC+S DSE V RV QH F ++L Q+C + F W PEKTDEYILPKIAER
Sbjct: 290 REAITAFLEPKCHSPDSENVRRVCCQHPFLRSQLQQICEKCFDWTPEKTDEYILPKIAER 349
Query: 294 DLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVV 353
+LRRF+NLR+ + ALG+ L ++PV CP+ IIK RK+QG E +EVSW +GL+SS V
Sbjct: 350 ELRRFSNLRSTSSALGIQPSLSEIPVPCPVLAIIKQRKVQGSEYYEVSWRNMHGLQSSAV 409
Query: 354 PADLIESACPEKIVEFEERRALR-------QPKKSKPKSSAAEIDQKLQALMLDIESENS 406
P DLI SACPEKI EF E++ +PKKS +++ ++D +LQ LML IESE++
Sbjct: 410 PGDLIRSACPEKITEFFEKKGEEKKQKRKARPKKSA-QAAVKDVDARLQELMLGIESESA 468
>gi|242080167|ref|XP_002444852.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
gi|241941202|gb|EES14347.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
Length = 698
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/417 (52%), Positives = 299/417 (71%), Gaps = 15/417 (3%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLN-SGSEVTQDDKNLDKMSSLRRNMGSEFS 59
+++ L + +L+ +G+IP++KL+TYRRRL + +E T+++ N ++SLRRN SEFS
Sbjct: 61 IRALLALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEFS 120
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MIKEAK LGL+LG+PCL+GVEEAEAQCA+LN SLCDGCF+SDSD FLFGARTVYRD++
Sbjct: 121 RMIKEAKHLGLALGIPCLDGVEEAEAQCAMLNFASLCDGCFTSDSDSFLFGARTVYRDVF 180
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
+GE GYV+CYEM+DI++KLGFGRNSLI+LA+LLGSDYS GV G GPE AC++VKSVGD+
Sbjct: 181 IGEGGYVICYEMEDIQKKLGFGRNSLISLAVLLGSDYSNGVHGFGPELACRLVKSVGDDA 240
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNK-EESLNQEINVNGTDHSLQRETPFSQVID 238
+L +I S+G+ ++ K + + ++ E+ +N D Q F +I+
Sbjct: 241 ILDQILSDGVKPARKCKGKNSGAIAGRVGGTCPKASTCEVGIN-QDSGGQ----FRDIIN 295
Query: 239 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 298
AY PKC+S DSEAV R +Q F ++L Q+C Q+F+W P KTDEYILPKIAER+LRRF
Sbjct: 296 AYLEPKCHSPDSEAVQRACSQQPFLRSQLQQICEQYFEWSPVKTDEYILPKIAERELRRF 355
Query: 299 ANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 358
+NLR+ + LG+ L ++PV CP+ I+K RK+QG E +EVSW GL+ SVVP DL+
Sbjct: 356 SNLRSTSSDLGIKPSLDEMPVPCPVLAIVKQRKVQGSEYYEVSWRNIDGLQVSVVPGDLV 415
Query: 359 ESACPEKIVEFEERRAL--RQPKKSKPKSSA------AEIDQKLQALMLDIESENST 407
SACPEKI F E + +Q ++++PK S ++D +LQ L+L IESE+ST
Sbjct: 416 RSACPEKITVFLENKDAQKKQKRRARPKKSGQAAAALKDVDAQLQELLLGIESESST 472
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 456 STAAKAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFI 515
S + +IDL SPSPV+ V + R +P E D +SPE ERKAR LR+F+
Sbjct: 636 SEVVEPTMIDLSSPSPVK---VDKSRRNGQKPDQDCEADDGS--QSPEHERKARELRLFL 690
Query: 516 ASIRDDIS 523
SIRD+++
Sbjct: 691 NSIRDELN 698
>gi|226529749|ref|NP_001149363.1| XPG I-region family protein [Zea mays]
gi|224029981|gb|ACN34066.1| unknown [Zea mays]
gi|413941545|gb|AFW74194.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/504 (47%), Positives = 327/504 (64%), Gaps = 54/504 (10%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLN-SGSEVTQDDKNLDKMSSLRRNMGSEFS 59
+++ + + +L+ +G+IP++KL+TYRRRL + +E T+++ N ++SLRRN SEFS
Sbjct: 61 IRALIALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEFS 120
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MIKEAK LGL+LG+PCL+G+EEAEAQCALLN SLCDGCF+SDSD FLFGA+TVYRD++
Sbjct: 121 RMIKEAKHLGLALGIPCLDGMEEAEAQCALLNFSSLCDGCFTSDSDSFLFGAKTVYRDVF 180
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
+GE GYV+CYEM+DI+ KLGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKS+GD+
Sbjct: 181 IGEGGYVICYEMEDIQNKLGFGRNSLISLAVLLGSDYSNGVHGFGPEAACRLVKSLGDDT 240
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ----EINVNGTDHSLQRETPFSQ 235
VL +I S+G VK A+ K +G + + E+ +N S F
Sbjct: 241 VLGQILSDG---VKPARKCKGKGSGANAGTVGGTCPKASTCEVGINQDSGSQ-----FRD 292
Query: 236 VIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL 295
+I+AY PKC+S DSEAV R +Q F ++LHQ+C Q+F W P KTDEYILPKIAER+L
Sbjct: 293 IINAYLEPKCHSPDSEAVQRACSQRPFLRSQLHQICEQYFAWSPVKTDEYILPKIAEREL 352
Query: 296 RRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPA 355
RRF+NLR+ + LG+ L ++PV CP+ I+K RK+QG E +EVSW GL+ SVVP
Sbjct: 353 RRFSNLRSTSSDLGMKPSLNEIPVPCPVLAIVKQRKVQGSEYYEVSWRNIDGLQVSVVPG 412
Query: 356 DLIESACPEKIVEFEERRAL--RQPKKSKPKSSA----AEIDQKLQALMLDIESENSTSS 409
+L+ SACPEKI EF E + +Q ++++PK S ++D +LQ L+L IESE
Sbjct: 413 ELVRSACPEKITEFLESKDAQKKQKRRARPKKSGQAAVKDVDAQLQELLLGIESE----- 467
Query: 410 NASFSSRVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSP 469
S S + TAA ++ A E +DL SP
Sbjct: 468 --SGSFPCTANGPQTAAIQM---------------------------VAPLQEFVDLSSP 498
Query: 470 S-PVQCRNVSRIREMSDQPINTIE 492
S P++ ++R R++SD T++
Sbjct: 499 SPPIRSCKIARSRKLSDSDTVTMD 522
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 460 KAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 519
+A +IDL SPSPV+ N R + + + +SPE ERKAR LR+F+ SIR
Sbjct: 633 EAAMIDLSSPSPVKVDNSRRNGKK--------DCEAGSSSQSPEHERKARELRLFLDSIR 684
Query: 520 DDI 522
D++
Sbjct: 685 DEL 687
>gi|195626660|gb|ACG35160.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/504 (46%), Positives = 325/504 (64%), Gaps = 54/504 (10%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLN-SGSEVTQDDKNLDKMSSLRRNMGSEFS 59
+++ + + +L+ +G+IP++KL+TYRRRL + +E T+++ N ++SLRRN SEFS
Sbjct: 61 IRALIALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEFS 120
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MIKEAK LGL+LG+PCL+G+EEAEAQCALLN SLCDGCF+SDSD FLFGA+T YRD++
Sbjct: 121 RMIKEAKHLGLALGIPCLDGMEEAEAQCALLNFSSLCDGCFTSDSDSFLFGAKTFYRDVF 180
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
+GE GYV+CYEM+DI+ KLGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKS+GD+
Sbjct: 181 IGEGGYVICYEMEDIQNKLGFGRNSLISLAVLLGSDYSNGVHGFGPEAACRLVKSLGDDT 240
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ----EINVNGTDHSLQRETPFSQ 235
VL +I S+G VK A+ K +G + + E+ +N S F
Sbjct: 241 VLGQILSDG---VKPARKCKGKGSGANAGTVGGTCPKASTCEVGINQDSGSQ-----FRD 292
Query: 236 VIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL 295
+I+AY PKC+S DSEAV R +Q F ++LHQ+ Q+F W P KTDEYILPKIAER+L
Sbjct: 293 IINAYLEPKCHSPDSEAVQRACSQRPFLRSQLHQIYEQYFAWSPVKTDEYILPKIAEREL 352
Query: 296 RRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPA 355
RRF+NLR+ + LG+ L ++PV CP+ I+K RK+QG E +EVSW GL+ SVVP
Sbjct: 353 RRFSNLRSTSSDLGMKPSLNEIPVPCPVLAIVKQRKVQGSEYYEVSWRNIDGLQVSVVPG 412
Query: 356 DLIESACPEKIVEFEERRAL--RQPKKSKPKSSA----AEIDQKLQALMLDIESENSTSS 409
+L+ SACPEKI EF E + +Q ++++PK S ++D +LQ L+L IESE
Sbjct: 413 ELVRSACPEKITEFLESKDAQKKQKRRARPKKSGQAAVKDVDAQLQELLLGIESE----- 467
Query: 410 NASFSSRVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSP 469
S S + TAA ++ A E +DL SP
Sbjct: 468 --SGSFPCTANGPQTAAIQM---------------------------VAPLQEFVDLSSP 498
Query: 470 S-PVQCRNVSRIREMSDQPINTIE 492
S P++ ++R R++SD T++
Sbjct: 499 SPPIRSCKIARSRKLSDSDTVTMD 522
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 460 KAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 519
+A +IDL SPSPV+ N R + + + +SPE ERKAR LR+F+ SIR
Sbjct: 633 EAAMIDLSSPSPVKVDNSRRNGKK--------DCEAGSSSQSPEHERKARELRLFLDSIR 684
Query: 520 DDI 522
D++
Sbjct: 685 DEL 687
>gi|218200332|gb|EEC82759.1| hypothetical protein OsI_27479 [Oryza sativa Indica Group]
Length = 632
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/404 (52%), Positives = 287/404 (71%), Gaps = 21/404 (5%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
D N SLRRN GSEFSCMIKEAK LG++LG+PCL+G+EEAEAQCA L+LESLCDGC
Sbjct: 93 DQPNSHPSISLRRNKGSEFSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGC 152
Query: 100 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 159
F+SDSD FLFGARTVYRD+++GE GYV+CYEM+DIE+ LGFGRNSLI+LA+LLGSDYS G
Sbjct: 153 FTSDSDAFLFGARTVYRDVFIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNG 212
Query: 160 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 219
V G GPE+AC++VKSVGDN++L +I S G+ ++ K K G NK + + + +
Sbjct: 213 VNGFGPETACRLVKSVGDNLILDQILSNGVKATRKCKG-KNSG------NKVDDMCPKAS 265
Query: 220 VNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPP 279
+ + F VI+AY PKC+S DSEAV RV QH F +L ++C ++F W P
Sbjct: 266 SCEVGMTQDSDGQFRDVINAYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSP 325
Query: 280 EKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFE 339
EKTD+YILPKIAER+LRRF++LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+E
Sbjct: 326 EKTDQYILPKIAERELRRFSDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYE 385
Query: 340 VSWEESYGLKSSVVPADLIESACPEKIVEF---------EERRALRQPKKSKPKSSAAEI 390
VSW GL+ SVVP DL++SACPEKI EF ++RRA +PKKS +++ ++
Sbjct: 386 VSWRNIEGLQVSVVPGDLVKSACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDV 442
Query: 391 DQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAATE--IDLT 432
D++LQ L+L IE+++ A+ S ++ +T A E +DL+
Sbjct: 443 DEQLQELLLGIEADSGGILGATASVCQTLTAAYTVAVEDVVDLS 486
>gi|449520116|ref|XP_004167080.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Cucumis
sativus]
Length = 299
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/253 (62%), Positives = 195/253 (77%), Gaps = 15/253 (5%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 60
+++ + + +L+ +GSIP IKLSTYRRRLN+G+EV Q D N ++ SL+RN GSEFS
Sbjct: 61 LRTLIALNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQTDANPQQICSLKRNKGSEFSL 120
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKEA+ALGL+LG+PCL+ VEEAEAQCALLN E LCDGCF+SDSD FLFGARTVYRDI L
Sbjct: 121 MIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDICL 180
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
G+ G+VVCYEMDDIE +LGFGRNS+IT ALLLGSDYSQGV G+G ESACQ+VK+VGD V
Sbjct: 181 GDSGHVVCYEMDDIETRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQLVKAVGDGAV 240
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
LQ+I SEGL+ K+ +NSKK+G + +G H + + FS+VIDAY
Sbjct: 241 LQKITSEGLALAKKGENSKKQG---------------LPKSGHGHYMLKCDEFSEVIDAY 285
Query: 241 SNPKCYSADSEAV 253
PKC+SADSEAV
Sbjct: 286 LKPKCHSADSEAV 298
>gi|449533599|ref|XP_004173761.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Cucumis
sativus]
Length = 294
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 138/274 (50%), Positives = 191/274 (69%), Gaps = 19/274 (6%)
Query: 255 RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPL 314
+VL QH FQH +L Q+CA+FF+W PEKTDE ILPKIAERDLRRFAN+R+ T LG +PL
Sbjct: 29 QVLDQHPFQHVKLQQICAEFFEWSPEKTDENILPKIAERDLRRFANIRSRTSELGFHIPL 88
Query: 315 QKV--PVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372
Q+V PV CP++GI+K RK+QG EC+EVSW ++ GL SVV ADL++ ACPE I+EFEE+
Sbjct: 89 QEVIIPVSCPVSGIVKHRKVQGNECYEVSW-KNIGLNLSVVSADLLQRACPEMIIEFEEK 147
Query: 373 RA--LRQPK-KSKPKSSA---AEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAA 426
RA +Q K K+K K SA AEID++L+ L+L+IESE+ N S V + T+
Sbjct: 148 RADGKKQNKGKTKTKKSAAVMAEIDKRLKTLLLEIESESRVVHNISH----VPIDSKTSG 203
Query: 427 TEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSP-VQCRNVSRIREMSD 485
T + Q++ L+ E + + + + E+IDL+SPSP +Q RNVS+ ++ +
Sbjct: 204 TGVH-ELNQEVFLNIE----PIIVDHARSCSTKRIEVIDLLSPSPAIQTRNVSKFQQKTS 258
Query: 486 QPINTIELSDSETEKSPELERKARALRMFIASIR 519
Q I+ I+LSD+E ++SPE ERKAR LR F+AS++
Sbjct: 259 QKIDVIDLSDTEIDQSPEHERKARELRSFLASLK 292
>gi|302772224|ref|XP_002969530.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
gi|300163006|gb|EFJ29618.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
Length = 454
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 168/497 (33%), Positives = 265/497 (53%), Gaps = 79/497 (15%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
L+RN GS+F M+++A AL + G+PCL +EEAEAQCA LN D CF++DSD LF
Sbjct: 10 LKRNKGSQFGRMVEDATALATAFGIPCLVSLEEAEAQCAALNAMGFADACFTADSDALLF 69
Query: 110 GARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
GA+ VY+DI L GE +VV Y+M I G+GRNSLI L +LLG DY GV GLGPE
Sbjct: 70 GAKVVYKDISLKPGE-SHVVAYDMTKIRNAFGYGRNSLIALGILLGCDYFPGVHGLGPEK 128
Query: 168 ACQIVKSVGDNVVLQRIASEG-LSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 226
A QIVK G++ +L+ + +G ++ KR + KC +KE S V+ H
Sbjct: 129 AQQIVKKFGEDKILEEMLRQGPVTLAKR---------TLKCKDKENS-----TVSSDAHG 174
Query: 227 LQRETPFS-QVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFF----QWPPEK 281
+ + + I AY++PKC++ SEAVHR + + + V A ++ +W P +
Sbjct: 175 FSEDDNMACKAIFAYTHPKCHAQTSEAVHRQVNMLINKDESRVSVAACYWVDLSKWIPSE 234
Query: 282 -----------------TDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPIT 324
D+YILPK+AERD+ R A+++A + GV+L ++ I+
Sbjct: 235 EYACKNSNGQSSIANFDADDYILPKLAERDVHRMASMQAAS--SGVNL----AGLQFKIS 288
Query: 325 GIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSKPK 384
I+K R+L+G + +EV W + + SS V A+L++ A P K+ EF + AL+ K ++
Sbjct: 289 EIVKKRQLRGVDHYEVKWVGNPDIPSSAVRAELVQRAYPSKVAEFMAKLALKGGKSTRRP 348
Query: 385 SSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAATEIDLTRRQDLLLDAESK 444
+ D + + +E + TS N ++ + +DW E+ +D D E+
Sbjct: 349 NDLVTSDLCGRLNKMTVE-DGKTSMN-----KMAVKDDWKTMMEV-----KD---DGETP 394
Query: 445 SNANMSCYPTGSTAAKAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPEL 504
S + + + A++ E+IDL +P + I+ +E SD++ + +L
Sbjct: 395 SIIDAFHHIKQNDASRLEVIDLTTP--------------LGKGIHLVEASDNDDD---DL 437
Query: 505 ERKARA--LRMFIASIR 519
+ +AR L+ FIASI+
Sbjct: 438 KHQARVRQLKSFIASIK 454
>gi|7576228|emb|CAB87918.1| putative protein [Arabidopsis thaliana]
Length = 337
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/265 (49%), Positives = 178/265 (67%), Gaps = 14/265 (5%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 60
+++ + + +++ +G+IP IK+ TY+RRL + E+ D K +SL+RNMGSEFSC
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC-FSSDSD----IFLFGARTVY 115
+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLC +S + D FL + V
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCRNMPWSVERDSLVCWFLLPSDMVN 180
Query: 116 RDIW-------LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
I LGE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E A
Sbjct: 181 SIISPNKFANELGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKA 240
Query: 169 CQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 228
C++V+S+GDNV+L+++ASEGLSF ++ + SKK+ C+ K + +NG + +
Sbjct: 241 CELVRSIGDNVILEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GTLPLVVINGNNRDPE 298
Query: 229 RETPFSQVIDAYSNPKCYSADSEAV 253
R QVIDA+ NPKC+ ADS V
Sbjct: 299 RLEEIKQVIDAFMNPKCHQADSNTV 323
>gi|302810129|ref|XP_002986756.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
gi|300145410|gb|EFJ12086.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
Length = 336
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 186/323 (57%), Gaps = 36/323 (11%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
L+RN GSEF M+++A AL + G+PCL +EEAEAQCA LN D CF++DSD LF
Sbjct: 10 LKRNKGSEFGRMVEDATALATAFGIPCLVSLEEAEAQCAALNAMGFADACFTADSDALLF 69
Query: 110 GARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
GA+ VY+DI L GE +VV Y+M I G+GRNSLI L +LLG DY GV GLGPE
Sbjct: 70 GAKVVYKDISLKPGE-SHVVAYDMTKIRNAFGYGRNSLIALGILLGCDYFPGVHGLGPEK 128
Query: 168 ACQIVKSVGDNVVLQRIASEG-LSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 226
A QIVK G++ +L+ + +G ++ KR + KC +K S V H
Sbjct: 129 AQQIVKKFGEDKILEEMLRQGPVTLAKR---------TLKCKDKANS-----TVASDAHG 174
Query: 227 LQRETPFS-QVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA----QFFQWPPEK 281
+ + + I AY++PKC++ SEAVHR + + + V A +W P +
Sbjct: 175 FSEDDNMACKAIFAYTHPKCHAQTSEAVHRQVNMLIKKDESRVSVAACCWVDVSKWIPSE 234
Query: 282 -------TDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQG 334
TD+YILPK+AERD+ R A+++A + GV+L ++ I+ I+K R+L+G
Sbjct: 235 EYACKNSTDDYILPKLAERDVHRMASMQAAS--SGVNL----AGLQFKISEIVKKRQLRG 288
Query: 335 KECFEVSWEESYGLKSSVVPADL 357
+ +EV W + + SS V A+L
Sbjct: 289 VDHYEVKWVGNPDIPSSAVRAEL 311
>gi|260796605|ref|XP_002593295.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
gi|229278519|gb|EEN49306.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
Length = 790
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 175/384 (45%), Gaps = 75/384 (19%)
Query: 10 ALLRSLNGSIPAIKLSTYRRRLNS---GSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAK 66
L+ ++G P +K T +R GS+ Q K L K ++R S F ++KE
Sbjct: 69 GLIFVVDGEPPELKFQTMMKRNQDRFWGSKTGQK-KGLGKPKKMKR---SHFKAILKECI 124
Query: 67 ALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-Y 125
L LG+P ++ EAEA CALLN ESL DGC + D D FL+GARTVYR++ L ++ +
Sbjct: 125 LLLDGLGIPHVQSKGEAEAFCALLNRESLVDGCLTDDGDAFLYGARTVYRNLTLDKKDPH 184
Query: 126 VVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 184
V CY+M DIE KL RN L+ LALLLG DY +GV G+G E A +++ ++ VL+R
Sbjct: 185 VDCYQMSDIEEKLLLDRNKLVGLALLLGCDYCPKGVPGVGKELAVRVMTALETCDVLER- 243
Query: 185 ASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP---FSQVIDAYS 241
FK + ETP +Q +
Sbjct: 244 --------------------FKV-------------------WRSETPCEMTNQPKGSQK 264
Query: 242 NPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANL 301
K S + + + L F + ++ +WP E T E +LP + ++
Sbjct: 265 RAKNSSIEVTVMRKALIDPAFPDTK--ELNLXLLEWPEEYTLEKVLPLVTYWEMSHLQT- 321
Query: 302 RANTLALGVDLPLQKV--PVKCPITGIIKSRKLQGKECFEVSWEESYGLK------SSVV 353
P QK P P + ++K+R G C EV W + G+ +++
Sbjct: 322 -----------PHQKKNRPSLSPHS-VVKTRTRNGVPCLEVQWYKPDGITAEEDYVTTIE 369
Query: 354 PADLIESACPEKIVEFEERRALRQ 377
P DL SA P + EF E++A +Q
Sbjct: 370 PEDLFTSAFPRLVQEFREKKAAQQ 393
>gi|218200330|gb|EEC82757.1| hypothetical protein OsI_27475 [Oryza sativa Indica Group]
Length = 305
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 108/160 (67%), Gaps = 14/160 (8%)
Query: 284 EYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE 343
+YILPKIAER+LRRF++LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+EVSW
Sbjct: 3 QYILPKIAERELRRFSDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWR 62
Query: 344 ESYGLKSSVVPADLIESACPEKIVEF---------EERRALRQPKKSKPKSSAAEIDQKL 394
GL+ SVVP DL++SACPEKI EF ++RRA +PKKS +++ ++D++L
Sbjct: 63 NIEGLQVSVVPGDLVKSACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDVDEQL 119
Query: 395 QALMLDIESENSTSSNASFSSRVVMSEDWTAATE--IDLT 432
Q L+L IE+++ A+ S ++ +T A E +DL+
Sbjct: 120 QELLLGIEADSGGILGATASVCQTLTAAYTVAVEDVVDLS 159
>gi|356498232|ref|XP_003517957.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like [Glycine
max]
Length = 1707
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 169/363 (46%), Gaps = 64/363 (17%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
L RN S S + E + L G+P + EAEAQCA L LE L DG + DSD+ LF
Sbjct: 1011 LERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLF 1070
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
GAR+VY++I+ +R YV Y M+DIE++LG R LI +ALLLGSDY++GV G+G +A
Sbjct: 1071 GARSVYKNIF-DDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAI 1129
Query: 170 QIVKSV---------------GDNVVLQRI-ASEGLSFVKRAKNSKKEGWSFKCNNKEES 213
++V + D +L R+ A+ G + K+ +++ S CN KE +
Sbjct: 1130 EVVNAFPEEDGLLKFRQWVESPDPTILGRLDANSGSNSRKKGSKIEEKMNSSSCNVKESA 1189
Query: 214 LNQEI-------------------------NVNGTDHSLQRETPFSQVIDAYSNPKCYSA 248
+ Q I NV+ H + P VI AY +P +
Sbjct: 1190 VMQNICHAQEQNELSDYIQEIKQTFFNKHRNVSKNWH-IPSSFPSDTVISAYYSPHVDKS 1248
Query: 249 DSEAVHRVLAQHLFQHARLH--QVCAQFFQWPPEKTDEYILPKIAERDLR---------- 296
+E HL +H ++C + F W +K DE ILP + E + R
Sbjct: 1249 -TEPFTWGKPDHLVLRKXVHMFRLCWEKFGWTGQKADELILPVLKEYNKRETQLRLEAFY 1307
Query: 297 ----RFANLRANTLALGVDLPLQKVP---VKCPITGIIKSRKLQGKECFEVSWEESYGLK 349
RFA +R+ + V K P + KSRK G+E +++ E S G++
Sbjct: 1308 NFNERFAKIRSKRIKKAVKGITGKQPSDLIDDSAEEFSKSRKT-GREPEDITLETSRGIE 1366
Query: 350 SSV 352
++
Sbjct: 1367 GNL 1369
>gi|356561657|ref|XP_003549096.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 144
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 99/133 (74%), Gaps = 8/133 (6%)
Query: 290 IAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLK 349
I ++LRRFANLR + +G++LPL ++PVKCP++ IIKSR++QG+EC+EVSWE GL+
Sbjct: 12 IVHKNLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLE 71
Query: 350 SSVVPADLIESACPEKIVEFEERRAL--------RQPKKSKPKSSAAEIDQKLQALMLDI 401
+S+VPADLIESAC EKI+EFEER+A R+PKK + SS AE+D KLQ L+LDI
Sbjct: 72 TSIVPADLIESACREKILEFEERKAQRKKQNIQKRKPKKKETNSSVAELDLKLQNLLLDI 131
Query: 402 ESENSTSSNASFS 414
+ + NAS S
Sbjct: 132 NLRDEANFNASDS 144
>gi|449446847|ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
Length = 1541
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 155/329 (47%), Gaps = 51/329 (15%)
Query: 6 HYSSALLRSLNGSIPAI-KLS----TYRRRLNSGSEVTQDDKNL-DKMSSLRRNMGSEFS 59
H + LL + + IP + K+S T ++ S + Q+ NL D+ L RN S S
Sbjct: 827 HSNDVLLDAKDAKIPTVGKISSAEITEDELIHRISVLEQERLNLGDEQKRLERNAESVNS 886
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
M E + L G+P + EAEAQCA + L +L DG + DSD+FLFGAR+VY++I+
Sbjct: 887 EMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF 946
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
+R YV Y M DIE +LG R+ LI +ALLLGSDY++GV G+G +A +++ + +
Sbjct: 947 -DDRKYVETYFMKDIEHELGLNRDKLIQMALLLGSDYTEGVSGIGIVNAVEVMNAFPEED 1005
Query: 180 VLQRI----------------ASEGLSFVKRAKNSKKEGWSFKCNN-------------- 209
L + A GL+ KR SK C+N
Sbjct: 1006 GLHKFKEWIESPDPSILGPLGAKTGLNAHKRG--SKASENDTTCSNSSGSASEENISKDL 1063
Query: 210 ------KEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQ 263
K+ +N+ NV+ H + E P VI AY C D A +
Sbjct: 1064 KENMAVKQSFMNKHRNVSKNWH-IPSEFPSETVISAYI---CPQVDKSA--EPFSWGKPD 1117
Query: 264 HARLHQVCAQFFQWPPEKTDEYILPKIAE 292
H L ++C + F W K DE +LP + E
Sbjct: 1118 HFVLRRLCWEKFGWENSKADELLLPVLNE 1146
>gi|50287803|ref|XP_446331.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525638|emb|CAG59255.1| unnamed protein product [Candida glabrata]
Length = 992
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 21/241 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MIK+ + L G+P + EAEAQCA L+NL+ L DG + DSD+FLFG + VY++++
Sbjct: 732 MIKDVQELLARFGIPYITAPMEAEAQCAELVNLK-LVDGIITDDSDVFLFGGKKVYKNMF 790
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
E+ YV Y+ +DI + LG R ++I LA LLGSDY+ G++G+GP S+ +I+ GD
Sbjct: 791 -QEKNYVEYYDSEDIYQGLGLTRETMIELAQLLGSDYTTGIKGMGPVSSMEILAEFGDLK 849
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWS-FKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 238
+R +EG F K+ K+EG F+ + +++ + +I L + P V D
Sbjct: 850 NFKRWYNEG-QFDKK----KQEGEDKFRRDLRKKLVKNDI-------ILDDDFPSVFVAD 897
Query: 239 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 298
+Y NP+ D + A L Q + WP EK+DE ++P I + + R+
Sbjct: 898 SYLNPEV---DHDKTPFTWANPDLDM--LRQFLYSYLGWPQEKSDEVLIPLIRDINARKK 952
Query: 299 A 299
A
Sbjct: 953 A 953
>gi|18405624|ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog;
AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
AltName: Full=XPG homolog
gi|13649704|gb|AAK37472.1| UV hypersensitive protein [Arabidopsis thaliana]
gi|332643872|gb|AEE77393.1| DNA repair protein UVH3 [Arabidopsis thaliana]
Length = 1479
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 146/309 (47%), Gaps = 56/309 (18%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 909 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 968
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 969 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1027
Query: 165 PESACQIVKSVGDNVVLQRIASE---------GLSFVKRAKNSKKEGWSFKCNNK----- 210
+A ++V + + LQ+ G + K KK G S +NK
Sbjct: 1028 IVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRG-SASVDNKGIISG 1086
Query: 211 ------EE----SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 260
EE ++Q V+ H + P VI AY NP+ L+
Sbjct: 1087 ASTDDTEEIKQIFMDQHRKVSKNWH-IPLTFPSEAVISAYLNPQVD----------LSTE 1135
Query: 261 LFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANL 301
F + L ++C + F W +KTDE +LP + E + R RFA +
Sbjct: 1136 KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKI 1195
Query: 302 RANTLALGV 310
R+ + V
Sbjct: 1196 RSKRINKAV 1204
>gi|11994123|dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]
Length = 1522
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 146/309 (47%), Gaps = 56/309 (18%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 949 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 1008
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 1009 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1067
Query: 165 PESACQIVKSVGDNVVLQRIASE---------GLSFVKRAKNSKKEGWSFKCNNK----- 210
+A ++V + + LQ+ G + K KK G S +NK
Sbjct: 1068 IVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRG-SASVDNKGIISG 1126
Query: 211 ------EE----SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 260
EE ++Q V+ H + P VI AY NP+ L+
Sbjct: 1127 ASTDDTEEIKQIFMDQHRKVSKNWH-IPLTFPSEAVISAYLNPQVD----------LSTE 1175
Query: 261 LFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANL 301
F + L ++C + F W +KTDE +LP + E + R RFA +
Sbjct: 1176 KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKI 1235
Query: 302 RANTLALGV 310
R+ + V
Sbjct: 1236 RSKRINKAV 1244
>gi|254581574|ref|XP_002496772.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
gi|238939664|emb|CAR27839.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
Length = 1030
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 138/277 (49%), Gaps = 19/277 (6%)
Query: 23 KLSTYRRRLNSG--SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGV 80
+ ST++ LN+ +D+ ++ + +R+ + MI + + L GVP +
Sbjct: 730 EFSTFKNVLNNRVVDNAFMEDELYEQQTKDKRDSDEVTADMITDVQDLLSRFGVPYITAP 789
Query: 81 EEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGF 140
EAEAQCA L + L DG + DSD+FLFG VY++++ ER YV Y+ + I + LG
Sbjct: 790 MEAEAQCATLMRDRLVDGVITDDSDVFLFGGNKVYKNMF-SERNYVEYYDAESIYKNLGL 848
Query: 141 GRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKK 200
RN +I LA LLGSDY+ G++G+GP S +++ G ++ +EG K+ + K
Sbjct: 849 DRNGMIELAQLLGSDYTNGIKGMGPVSGMEVIAEFGSLEEFRKWHNEGQFDKKKQEQENK 908
Query: 201 EGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 260
F+ + + + E+ L P V +AY NP+ + +E V
Sbjct: 909 ----FQKDLRRRLVKNEV-------VLDENFPSETVKNAYLNPEVDNDKTEFVWGTPDLD 957
Query: 261 LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+ + +V WP EKTDE ++P I + + R+
Sbjct: 958 MLRSFFKRKVG-----WPQEKTDEVLVPLIRDMNKRK 989
>gi|255552654|ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3, putative [Ricinus communis]
Length = 1641
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 143/301 (47%), Gaps = 48/301 (15%)
Query: 28 RRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQC 87
+ R+N GSE L RN S S M E + L G+P + EAEAQC
Sbjct: 943 QERMNLGSE----------QKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQC 992
Query: 88 ALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLIT 147
A + L +L DG + DSD+FLFGAR VY++I+ +R YV Y M DIER+LG R LI
Sbjct: 993 AYMELANLVDGVVTDDSDVFLFGARNVYKNIF-DDRKYVETYFMKDIERELGLTREKLIR 1051
Query: 148 LALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASE---------GLSFVKRAKNS 198
+ALLLGSDY++G+ G+G +A ++V + + L++ G V+ ++
Sbjct: 1052 MALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLEKFREWIYSPDPTILGKLDVRDGRSM 1111
Query: 199 KKEGWSFKCNN--------------KEES------------LNQEINVNGTDHSLQRETP 232
+++G S NN KEE +++ NV+ H + P
Sbjct: 1112 RRKGESDSANNNVVDSFGKKVSESHKEEDSADHTQEIRQIFMDKHRNVSKNWH-VPSSFP 1170
Query: 233 FSQVIDAYSNPKCYSADSEAVHRVLAQHLF-QHARLHQVCAQFFQWPPEKTDEYILPKIA 291
VI AY +P+ + H+ + + +C + F W +K+DE +LP +
Sbjct: 1171 SEAVISAYMSPQVDKSTEPFTWGKPDLHVLRRQVMIFIICWEKFAWGVQKSDELLLPVLK 1230
Query: 292 E 292
E
Sbjct: 1231 E 1231
>gi|297815070|ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321256|gb|EFH51677.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1463
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 143/299 (47%), Gaps = 43/299 (14%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 904 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 963
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 964 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1022
Query: 165 PESACQIVKSVGDNVVLQRIASE---------GLSFVKRAKNSKKEGWSFKCNNKEES-- 213
+A ++V + + L + GL KR S + +++
Sbjct: 1023 IVNAIEVVTAFPEEDGLHKFREWVESPDPTILGLKIKKRGSGSVDNKGIISGASTDDTEE 1082
Query: 214 -----LNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH---A 265
++Q V+ H + P VI AY NP+ V R + + +
Sbjct: 1083 IKQIFMDQHRKVSKNWH-IPSTFPSEAVISAYLNPQ--------VDRSTEKFSWGKPDLS 1133
Query: 266 RLHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANLRANTLALGV 310
L ++C + F W +KTD+ +LP + E + R RFA +R+ + V
Sbjct: 1134 VLRKLCWEKFNWNSKKTDDLLLPVLKEYEKRETQLRMEAFYSFNERFAKIRSKRINKAV 1192
>gi|307212664|gb|EFN88367.1| Flap endonuclease GEN [Harpegnathos saltator]
Length = 741
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 97/177 (54%), Gaps = 14/177 (7%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGV 74
L G P IK T RR N + + ++ S+F+ ++ E K + +G+
Sbjct: 73 LEGKAPDIKHKTIIRRHNVRHGFCE-------RKTSKKGGRSQFNRILTECKQMLEYMGI 125
Query: 75 PCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL------GERGYVV- 127
C++ EAEA CA LN + L DGC S DSD FL+GAR VYR+ G RG V
Sbjct: 126 TCIQSHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGARIVYRNFCTSIQGNCGARGGSVD 185
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRI 184
Y MD IE+ L GRN +I LALL G DY +GV G+G E+A + K V DN VLQRI
Sbjct: 186 IYCMDKIEKILNIGRNKMIALALLCGCDYDEGVTGVGKEAALKFFKIVEDNNVLQRI 242
>gi|296087697|emb|CBI34953.3| unnamed protein product [Vitis vinifera]
Length = 1449
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 142/299 (47%), Gaps = 45/299 (15%)
Query: 32 NSGSEVTQDDKNL-----------------------DKMSSLRRNMGSEFSCMIKEAKAL 68
N G+ VT+D KN+ D+ L RN S M E + L
Sbjct: 746 NMGNSVTEDKKNVQFGVTEDVLEEMMILDQECLNLGDEQRKLERNADCVSSEMFAECQEL 805
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 128
G+P + EAEAQCA + L +L DG + DSD+FLFGAR+VY++I+ ER YV
Sbjct: 806 LQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF-DERKYVET 864
Query: 129 YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------------- 175
Y M DIE +LG R +I +ALLLGSDY++GV G+G +A +++ S
Sbjct: 865 YFMKDIETELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPEEDGLHKFREWV 924
Query: 176 --GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPF 233
D +L ++ E S ++ + E + K+ +++ NV+ H + P
Sbjct: 925 ESPDPNILGKVNVETGSSSRKRGSKHNESVDDIQSGKQIFMDKHRNVSKNWH-IPSSFPS 983
Query: 234 SQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292
VI AY++P+ S LF L ++C + F W +K DE +LP + E
Sbjct: 984 ETVISAYASPQV--DQSTEPFSWGKPDLFV---LRKLCLEKFGWGNQKADELLLPVLKE 1037
>gi|307184932|gb|EFN71197.1| Flap endonuclease GEN [Camponotus floridanus]
Length = 738
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 16/180 (8%)
Query: 15 LNGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 72
L G P +K T RR + SG + ++ + ++ ++F+ ++ E K + +
Sbjct: 73 LEGKAPTLKHKTIARRNDVRSGFQ--------ERKEAAKKGGRTQFNRVLNECKEMLKFM 124
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE------RGYV 126
G+ C++ EAEA CA LN L DGC S DSD FL+GA+ VYR+ + G +
Sbjct: 125 GIACVQSYGEAEAMCAYLNENGLVDGCVSQDSDCFLYGAKIVYRNFCTSKGNNGATAGSI 184
Query: 127 VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 186
Y M+ IE+ L GRN +I LALL G DYS+GV G+G E+A + K+V D VLQRI +
Sbjct: 185 DVYNMEKIEKTLNIGRNKMIVLALLCGCDYSEGVNGVGKEAALKFFKTVDDENVLQRIQN 244
>gi|301758368|ref|XP_002915044.1| PREDICTED: flap endonuclease GEN homolog 1-like [Ailuropoda
melanoleuca]
Length = 907
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 164/369 (44%), Gaps = 66/369 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIR 227
Query: 174 SVGDNVVLQRIAS---------EGLSFVKRA-----------KNSKKEGWSF-KCNNKEE 212
++ +LQR + L+ K A K+ + G K N E
Sbjct: 228 TLKGQSLLQRFTQWNEESCSDPQPLAIKKLAHCSVCSHPGSPKDHVRNGCKLCKTNRYCE 287
Query: 213 SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA 272
+ E H + + S V ++ K YS + H V+ + L +L +V
Sbjct: 288 PHDYEYCCPCEWHRTEHDRQLSTVENSIKK-KAYSCEGFPFHEVIQEFLLNKDKLVKVIR 346
Query: 273 Q------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQK 316
FQ WP E +L + D+ R+ +N L
Sbjct: 347 YQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMTERKLGRRNSNQLQ--------- 397
Query: 317 VPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEKI 366
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE I
Sbjct: 398 -PIR-----IVKTRIRNGIHCFEIEWEKPEHYAMEDKHGELVLQTIEEESLFEAAYPE-I 450
Query: 367 VEFEERRAL 375
V +++ L
Sbjct: 451 VAVHQKQNL 459
>gi|281344218|gb|EFB19802.1| hypothetical protein PANDA_002978 [Ailuropoda melanoleuca]
Length = 906
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 164/369 (44%), Gaps = 66/369 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIR 227
Query: 174 SVGDNVVLQRIAS---------EGLSFVKRA-----------KNSKKEGWSF-KCNNKEE 212
++ +LQR + L+ K A K+ + G K N E
Sbjct: 228 TLKGQSLLQRFTQWNEESCSDPQPLAIKKLAHCSVCSHPGSPKDHVRNGCKLCKTNRYCE 287
Query: 213 SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA 272
+ E H + + S V ++ K YS + H V+ + L +L +V
Sbjct: 288 PHDYEYCCPCEWHRTEHDRQLSTVENSIKK-KAYSCEGFPFHEVIQEFLLNKDKLVKVIR 346
Query: 273 Q------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQK 316
FQ WP E +L + D+ R+ +N L
Sbjct: 347 YQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMTERKLGRRNSNQLQ--------- 397
Query: 317 VPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEKI 366
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE I
Sbjct: 398 -PIR-----IVKTRIRNGIHCFEIEWEKPEHYAMEDKHGELVLQTIEEESLFEAAYPE-I 450
Query: 367 VEFEERRAL 375
V +++ L
Sbjct: 451 VAVHQKQNL 459
>gi|164663201|ref|XP_001732722.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
gi|159106625|gb|EDP45508.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
Length = 1109
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 116/232 (50%), Gaps = 21/232 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E +AL G+P L EAEAQCA L ++ L DG + DSD+FLFG VYR+++
Sbjct: 781 MTAEIQALLRIFGLPYLTAPMEAEAQCAQLAMQHLVDGIITDDSDVFLFGGTPVYRNMFN 840
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
R V CY M+D+ R+LG R LI LA LLGSDY++G+ G+GP A +I+ +
Sbjct: 841 NRRS-VECYWMNDMHRELGLSRERLIQLAFLLGSDYTEGLPGVGPVLAMEILSLFPGDYA 899
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNK-EESLNQEINVNGTDHSLQRETPFSQVIDA 239
L E V+ + + K + + +L +++ L E P V A
Sbjct: 900 LVHF-REWWQHVQIGADDEVHDARSKVRRRIKRALRDKVH-------LSEEWPDPLVQQA 951
Query: 240 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA---QFFQWPPEKTDEYILP 288
Y P+ +D V + A L + A ++ +WPP KTD+Y+ P
Sbjct: 952 YWEPQVDDSDEPFV--------WGQADLDAIRAFLQEYLRWPPSKTDQYVQP 995
>gi|410076602|ref|XP_003955883.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
gi|372462466|emb|CCF56748.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
Length = 988
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 17/237 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 727 MITDVQELLSRFGIPFVTAPMEAEAQCAELIALGLVDGIITDDSDVFLFGGTKVYKNLF- 785
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ YV Y D IE+ LG R +I LALLLGSDY+ G++G+GP S+ +I+ D
Sbjct: 786 QDKKYVEFYNYDTIEKSLGIDRKKMIELALLLGSDYTTGIKGMGPVSSMEILAEFDDLKN 845
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ +EG F K+ S+ + F+ + ++ +N E+ ++ T P V DAY
Sbjct: 846 FKEWYNEG-QFDKKKLESQNK---FQKDLRKRLVNNEVTLDDT-------FPSELVFDAY 894
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+P+ D ++ V R WP EK+DE ++P I E + R+
Sbjct: 895 LHPEV---DHDSTPFVWGDPDLDMLRTFMKIR--LNWPQEKSDEALVPLIREINGRK 946
>gi|440909937|gb|ELR59789.1| Flap endonuclease GEN-like protein 1, partial [Bos grunniens mutus]
Length = 906
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 168/386 (43%), Gaps = 84/386 (21%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A +++K
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIK 227
Query: 174 SVGDNVVLQRIAS-----------------------------------EGLSFVKRAKNS 198
+ +LQR G + +
Sbjct: 228 ILKGQSLLQRFNQWSEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERNGCKLCQTDRYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + ++C + E +N +++++++ PF +V + K +
Sbjct: 288 EPHDYEYRCPCEWHRTEHERQLNAVENNIKKKACSCEGFPFHEVTQEFLLNK-----DKL 342
Query: 253 VHRVLAQH----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTL 306
V V Q LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 343 VKAVRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLTLLTHYDMTERKLGRRNSNQL 397
Query: 307 ALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPAD 356
P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 398 Q----------PIR-----IVKNRIRNGVHCFEIEWEKPEHYAIEDKHGELVVQTIEEES 442
Query: 357 LIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + ++++++ + KK K
Sbjct: 443 LFEAAYPEIVAIYQKQKSENKGKKQK 468
>gi|332029054|gb|EGI69068.1| Flap endonuclease GEN [Acromyrmex echinatior]
Length = 736
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 14/177 (7%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGV 74
L G P +K T RR + S + + ++ ++F+ ++ E K L +GV
Sbjct: 68 LEGKPPILKHKTIARRNDVRSR-------FQERKTAKKGGRTQFNRVLNECKELLRYMGV 120
Query: 75 PCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY-------VV 127
C++ EAEA CA LN + L DGC S DSD FL+GA+ VYR+ + G V
Sbjct: 121 ACVQSYGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRNFCMSTHGNCGATGGSVD 180
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRI 184
Y M+ IE+ L GRN +I LALL G DY +GV G+G E+ + K+V + VLQRI
Sbjct: 181 VYSMEKIEKTLNIGRNKMIALALLCGCDYDEGVNGVGKEATLKFFKTVKEENVLQRI 237
>gi|390365680|ref|XP_003730870.1| PREDICTED: uncharacterized protein LOC100889325 [Strongylocentrotus
purpuratus]
Length = 1543
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 147/334 (44%), Gaps = 55/334 (16%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
+R+ S FS +KE + L +GVPC++ EAEA CA LN + DGC + D D FL+
Sbjct: 130 VRKASRSHFSGWLKECQELLELMGVPCIQSKGEAEAMCAALNSAGIVDGCMTEDGDAFLY 189
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESA 168
GAR VYR++ + G V CY MDDIE KL R L+ LA+LLG DY +GV G+G E A
Sbjct: 190 GARIVYRNLNMAT-GKVDCYRMDDIETKLDLDRGRLVALAILLGCDYLPKGVPGVGKEVA 248
Query: 169 CQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKC--NNKEESLNQEINVNGTDHS 226
+ +KS+ +V + L+ + + G + C N + + + + V G
Sbjct: 249 MRFMKSLPSSV-------DPLNLFQDWRG----GCASACLTNEERDVRKKSVRVEG---- 293
Query: 227 LQRETPFSQVIDAY-SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEY 285
P VI + N + R L HL Q + +WP E T E
Sbjct: 294 ----FPNQDVIQEFLRNKERPPTHHSEWRRPLLLHLQQFNLVK------MEWPIEYTQEK 343
Query: 286 ILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSW--- 342
++P + DL + L ++K R QG C EV W
Sbjct: 344 VVPLMTLYDLTHMTSDPKGRLTPA---------------SVVKLRVRQGVPCAEVKWHKP 388
Query: 343 -------EESYGLKSSVVPADLIESACPEKIVEF 369
E+ ++V +L SA P+ + +F
Sbjct: 389 EEDKENDEDCEPFYTTVEERELFTSAYPDVMEQF 422
>gi|311253092|ref|XP_003125389.1| PREDICTED: flap endonuclease GEN homolog 1 [Sus scrofa]
Length = 906
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 167/385 (43%), Gaps = 82/385 (21%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ LG R+SL+ LA+LLG DY +GV G+G E A +++K
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQALKLIK 227
Query: 174 SVGDNVVLQRIAS-----------------------------------EGLSFVKRAKNS 198
++ +LQR G K +
Sbjct: 228 TLKGQSLLQRFNQWIEESYSSNSQPLVVNKLAHCSVCSHPGSPRDHERHGCKLCKTDRFC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSAD--- 249
+ + + C + +N ++S++++ PF +VI + S D
Sbjct: 288 EPHDYEYSCPCEWHQTECGRQLNAVENSIKKKACSCEGFPFHEVIQEF----LLSKDKLV 343
Query: 250 SEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLA 307
E +R LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 344 KEIRYRRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMTERKLGRRNSNQLQ 398
Query: 308 LGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSW--------EESYG--LKSSVVPADL 357
P++ I+K+R G CFE+ W E+ YG + ++ L
Sbjct: 399 ----------PIR-----IVKTRIRNGVRCFEIEWEKPEHYTTEDEYGELVLQTIEEESL 443
Query: 358 IESACPEKIVEFEERRALRQPKKSK 382
E+A PE + ++++++ + KK K
Sbjct: 444 FEAAYPEIVAIYQKQKSEIKGKKQK 468
>gi|225452522|ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
Length = 1513
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 32 NSGSEVTQDDKNL-----------------------DKMSSLRRNMGSEFSCMIKEAKAL 68
N G+ VT+D KN+ D+ L RN S M E + L
Sbjct: 786 NMGNSVTEDKKNVQFGVTEDVLEEMMILDQECLNLGDEQRKLERNADCVSSEMFAECQEL 845
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 128
G+P + EAEAQCA + L +L DG + DSD+FLFGAR+VY++I+ ER YV
Sbjct: 846 LQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF-DERKYVET 904
Query: 129 YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASE- 187
Y M DIE +LG R +I +ALLLGSDY++GV G+G +A +++ S + L +
Sbjct: 905 YFMKDIETELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPEEDGLHKFREWV 964
Query: 188 --------GLSFVKRAKNSKKEGWSFKCNNKEESLNQ----EINVNGTDHS--------- 226
G V+ +S+K G ++ S N + NV+ +H+
Sbjct: 965 ESPDPNILGKVNVETGSSSRKRGSKVGSGDQSHSKNNMDAFDENVSQNEHNESVDDIQSG 1024
Query: 227 ----------------LQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV 270
+ P VI AY++P+ S LF L ++
Sbjct: 1025 KQIFMDKHRNVSKNWHIPSSFPSETVISAYASPQVDQ--STEPFSWGKPDLFV---LRKL 1079
Query: 271 CAQFFQWPPEKTDEYILPKIAE 292
C + F W +K DE +LP + E
Sbjct: 1080 CLEKFGWGNQKADELLLPVLKE 1101
>gi|51013165|gb|AAT92876.1| YGR258C [Saccharomyces cerevisiae]
Length = 1031
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L LG+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRLGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|329664332|ref|NP_001192379.1| flap endonuclease GEN homolog 1 [Bos taurus]
gi|296482355|tpg|DAA24470.1| TPA: flap structure-specific endonuclease-like [Bos taurus]
Length = 906
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 167/386 (43%), Gaps = 84/386 (21%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A +++K
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIK 227
Query: 174 SVGDNVVLQRIAS-----------------------------------EGLSFVKRAKNS 198
+ +LQR G + +
Sbjct: 228 ILKGQSLLQRFNQWSEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERNGCKLCQTDRYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + ++C + E +N +++++++ PF +V + K +
Sbjct: 288 EPHDYEYRCPCEWHRTEHERQLNAVENNIKKKACSCEGFPFHEVAQEFLLNK-----DKL 342
Query: 253 VHRVLAQH----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTL 306
V V Q LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 343 VKAVRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLTLLTHYDMTERKLGRRNSNQL 397
Query: 307 ALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPAD 356
P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 398 Q----------PIR-----IVKNRIRNGVHCFEIEWEKPEHYTIEDKHGELAVQTIEEES 442
Query: 357 LIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + ++++++ + K K
Sbjct: 443 LFEAAYPEIVAIYQKQKSENKGTKQK 468
>gi|403217913|emb|CCK72405.1| hypothetical protein KNAG_0K00370 [Kazachstania naganishii CBS
8797]
Length = 979
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 139/274 (50%), Gaps = 32/274 (11%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
+D D+ +R+ M+++ + L G+P + EAEAQCA L +L DG
Sbjct: 696 EDDLFDQQVKDKRDADEVTPQMVEDIQELLSRFGIPFIVSPMEAEAQCAELLGLNLVDGI 755
Query: 100 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 159
+ DSD+FLFG VY++++ +R YV Y+ + I R LG R +I LALLLGSDY+ G
Sbjct: 756 ITDDSDVFLFGGTKVYKNLF-QDRKYVEYYDYETIVRSLGIDRAQMIELALLLGSDYTPG 814
Query: 160 VRGLGPESACQIVKSVGDNVVLQRIASEG-LSFVKRAKNSKKEGWSFKCNNKEESLNQEI 218
++ +GP S+ +I+ GD +R EG L+ ++K++K F+ + ++ + ++
Sbjct: 815 IKSMGPVSSVEILAEFGDLSEFKRWYEEGQLNIEAQSKDNK-----FRRDLRKRLVKNDV 869
Query: 219 NVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHL-----FQHARLHQVCAQ 273
L + P VIDAY +P+ + R L F H RL
Sbjct: 870 -------LLDPDFPSGTVIDAYLHPEV--DHDKTSFRWSPPDLDMLRTFLHRRLG----- 915
Query: 274 FFQWPPEKTDEYILPKIAERDL-RRFANLRANTL 306
WP EK+DE ++P I RD+ RR + R TL
Sbjct: 916 ---WPDEKSDEVLVPLI--RDINRRSSKGRQTTL 944
>gi|357113521|ref|XP_003558551.1| PREDICTED: uncharacterized protein LOC100824635 [Brachypodium
distachyon]
Length = 1460
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 134/274 (48%), Gaps = 52/274 (18%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 866 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNI 925
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
+ +R YV Y M DIE +LG R+ LI +ALLLGSDY++G+ G+G +A ++V + +
Sbjct: 926 F-DDRKYVETYFMKDIESELGLTRDQLIRMALLLGSDYTEGISGIGIVNAIEVVHAFSEE 984
Query: 179 VVLQRI------------------ASEGLSFVKRAKN-SKKEGWSFK-----------CN 208
LQ+ S+G + K N S ++G S + +
Sbjct: 985 DGLQKFREWIESPDPAILGKLEKETSDGSTRRKSGGNESSEKGNSLEPECVEGSDGKHSS 1044
Query: 209 NKEES-----LNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQ 263
N+ E +N+ NV+ H + P VI AY +P+ ++ R F
Sbjct: 1045 NETEHIKKIFMNKHRNVSKNWH-IPSTFPSETVISAYISPQV----DDSTER------FS 1093
Query: 264 HAR-----LHQVCAQFFQWPPEKTDEYILPKIAE 292
R L ++C + F W EK DE +LP + E
Sbjct: 1094 WGRPDLSLLRKLCWERFGWNKEKADELLLPVLRE 1127
>gi|325192518|emb|CCA26951.1| DNA repair protein putative [Albugo laibachii Nc14]
Length = 939
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 16/245 (6%)
Query: 52 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 111
R+M M+++ L GVP L EAEAQCA L L DG + DSDIF FG
Sbjct: 643 RDMEGFDDEMVEQVMELLTLFGVPFLVCPMEAEAQCATLEQLGLVDGIVTDDSDIFPFGG 702
Query: 112 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
VY++I+ ++ +V ++ DIER+LGF R +I+LALLLGSDY+ GVRG+G +A +I
Sbjct: 703 TKVYKNIFHHQK-FVEAFDTRDIERELGFTRADMISLALLLGSDYTPGVRGIGIVNAAEI 761
Query: 172 VKSVGDNVV-LQRIASEGLSF-VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
+ S G + L+ + F V N +KE K + E ++ + T S++R
Sbjct: 762 ISSFGSSSAGLKEFKAWIEEFDVHEEANRRKE--KRKGEEELEKMSPKDRFKYTHASVRR 819
Query: 230 -----ET-PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTD 283
ET P +QV++AY +P+ + + L L C Q F W K D
Sbjct: 820 KWELGETFPNAQVMEAYLHPQV-----DTCSKKFQWSLPDFTELKNYCTQVFGWEMNKID 874
Query: 284 EYILP 288
+ P
Sbjct: 875 GMLTP 879
>gi|6321697|ref|NP_011774.1| Rad2p [Saccharomyces cerevisiae S288c]
gi|131811|sp|P07276.2|RAD2_YEAST RecName: Full=DNA repair protein RAD2
gi|172329|gb|AAA66928.1| RAD2 [Saccharomyces cerevisiae]
gi|1323470|emb|CAA97287.1| RAD2 [Saccharomyces cerevisiae]
gi|285812449|tpg|DAA08349.1| TPA: Rad2p [Saccharomyces cerevisiae S288c]
gi|392299514|gb|EIW10608.1| Rad2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1031
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|348681509|gb|EGZ21325.1| hypothetical protein PHYSODRAFT_455731 [Phytophthora sojae]
Length = 502
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 117/241 (48%), Gaps = 21/241 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+ E AL GVP L EAEAQCA L L DG + DSDIF FG + VY++I+
Sbjct: 209 MVAEVMALLRLFGVPFLVSPMEAEAQCAALEQLGLVDGVITDDSDIFPFGGQRVYKNIFH 268
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ +V + DIER+LGF R +I LALLLGSDY+ GVRG+G +A +I +
Sbjct: 269 HQK-FVEAFSARDIERELGFSREQIIALALLLGSDYTDGVRGIGIVNATEIAAAYPGIEG 327
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR----------- 229
L+ F + +K G ++ E ++E +V QR
Sbjct: 328 LREFKEWVREFDVAKEAERKTGEELDGDS--EGNSEEDDVETARERFQRSHTTVRRKWEL 385
Query: 230 --ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 287
E P QV+ AY +P+ SEA A L + L CA F W +K+D +L
Sbjct: 386 GDEFPSKQVVQAYMSPQVDR--SEARFSWSAPDL---SALRNYCANAFGWDQQKSDGVLL 440
Query: 288 P 288
P
Sbjct: 441 P 441
>gi|256272689|gb|EEU07666.1| Rad2p [Saccharomyces cerevisiae JAY291]
Length = 1031
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|151943533|gb|EDN61844.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
Length = 1031
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|207344901|gb|EDZ71889.1| YGR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1031
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|349578461|dbj|GAA23627.1| K7_Rad2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1031
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|259146759|emb|CAY80016.1| Rad2p [Saccharomyces cerevisiae EC1118]
Length = 1031
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKD 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|365765505|gb|EHN07013.1| Rad2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1031
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|114576279|ref|XP_001136636.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan
troglodytes]
gi|410034836|ref|XP_003949810.1| PREDICTED: flap endonuclease GEN homolog 1 [Pan troglodytes]
gi|410218742|gb|JAA06590.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410255580|gb|JAA15757.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410287868|gb|JAA22534.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410352247|gb|JAA42727.1| Gen homolog 1, endonuclease [Pan troglodytes]
Length = 908
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 167/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GARTVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGARTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKE 211
+ +LQR +S L K+ K+ ++ G K +
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAVYQKQKLEIKGKKQK 469
>gi|323354903|gb|EGA86736.1| Rad2p [Saccharomyces cerevisiae VL3]
Length = 998
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>gi|397513474|ref|XP_003827038.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Pan paniscus]
gi|397513476|ref|XP_003827039.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Pan paniscus]
gi|397513478|ref|XP_003827040.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan paniscus]
Length = 908
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 167/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GARTVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGARTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKE 211
+ +LQR +S L K+ K+ ++ G K +
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSYPGSPKDHERNGCRLCKSDKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAVYQKQKLEIKGKKQK 469
>gi|426334793|ref|XP_004028921.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Gorilla
gorilla gorilla]
gi|426334795|ref|XP_004028922.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 908
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 170/388 (43%), Gaps = 87/388 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN + DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNADGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI-----------------------------------ASEGLSFVKRAKNS 198
+ +LQR G K K
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSICSHPGSPKDHERNGCRLCKSDKYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + + C + + +N +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ + +N
Sbjct: 342 LVKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMIERKLGSRNSNQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVP 354
L P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 397 LQ----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEE 441
Query: 355 ADLIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + +++++ + KK K
Sbjct: 442 ESLFEAAYPEIVAVYQKQKLEIKGKKQK 469
>gi|414865352|tpg|DAA43909.1| TPA: hypothetical protein ZEAMMB73_723390 [Zea mays]
Length = 1531
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 132/273 (48%), Gaps = 50/273 (18%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 914 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNI 973
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
+ +R YV Y M DIE +LG R LI +ALLLGSDY++GV G+G +A ++V + +
Sbjct: 974 F-DDRKYVETYFMKDIESELGLSREQLIRMALLLGSDYTEGVSGIGIVNAIEVVHAFPEE 1032
Query: 179 VVLQR------------IASEGLSFVKRAK---------NSKKEGWSFKC---NNKEESL 214
LQ+ + R+K + K +G +C ++ ++S
Sbjct: 1033 DGLQKFKEWIESPDPSIFGKLHMEISGRSKKRKLDENDSDGKGKGLEPECIQGSDDKQSS 1092
Query: 215 NQEINVNGTDHSLQRET----------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH 264
N++ +V S R P +V++AY +P+ S + F
Sbjct: 1093 NEDEHVKEIFMSKHRNVSKNWHVPATFPSEKVVNAYISPQVDS----------STEPFSW 1142
Query: 265 AR-----LHQVCAQFFQWPPEKTDEYILPKIAE 292
R L ++C + F W EK DE +LP + E
Sbjct: 1143 GRPDLGLLRRLCWERFGWGKEKADELLLPVLRE 1175
>gi|255711770|ref|XP_002552168.1| KLTH0B08756p [Lachancea thermotolerans]
gi|238933546|emb|CAR21730.1| KLTH0B08756p [Lachancea thermotolerans CBS 6340]
Length = 1023
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 127/253 (50%), Gaps = 26/253 (10%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M+ E + L G+P + EAEAQCA L + L DG + DSDIFLFG VY+++
Sbjct: 758 AAMVAEVQDLLTRFGIPFMTAPMEAEAQCAELLMLGLVDGIITDDSDIFLFGGDKVYKNM 817
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
+ E+ YV Y D ++++LG R I LA LLGSDY+ GV+ +GP SA +I+ G+
Sbjct: 818 FQ-EKNYVEYYYSDLMKKELGLDREKFIELAQLLGSDYTTGVKSVGPVSAMEILAEFGNL 876
Query: 179 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 238
+ S+G + K ++E +F+ +++ + E+ L E P V +
Sbjct: 877 HNFRNWYSDG----QFNKKKQEEEPTFEKRLRKKLVTSEV-------ILDTEFPSDLVKE 925
Query: 239 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQ----WPPEKTDEYILPKIAERD 294
AY P+ D +A R FFQ WP EKTDE ++P I E +
Sbjct: 926 AYLRPEV---DHDATRFTWGVPDLDRLR------SFFQSTIGWPQEKTDEVMIPLIREVN 976
Query: 295 LRRFANLRANTLA 307
R+ ++ NTL
Sbjct: 977 NRKKTGIQ-NTLT 988
>gi|340709477|ref|XP_003393334.1| PREDICTED: flap endonuclease GEN-like [Bombus terrestris]
Length = 725
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGV 74
L G P +K T +R + S + + + ++F+ ++ E K + +G+
Sbjct: 73 LEGKAPTLKHKTIAKRNDVRS-------GFREKKTASKGGRTQFNRILNECKEMLQLMGL 125
Query: 75 PCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL---GER----GYVV 127
C++G EAEA CA LN + L DGC S DSD FL+GA+TVYR+ G R G V
Sbjct: 126 ACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKTVYRNFCTSTQGNRGSSGGAVD 185
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 186
Y+++ IER L GRN +I LALL G DY+ G+ G+G E+A ++ K V D +L+R+ S
Sbjct: 186 EYKLEKIERLLELGRNKMIALALLCGCDYNDGLNGVGKEAAMKLFKIVNDEDILERMKS 244
>gi|403288138|ref|XP_003935270.1| PREDICTED: flap endonuclease GEN homolog 1 [Saimiri boliviensis
boliviensis]
Length = 909
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 127/527 (24%), Positives = 225/527 (42%), Gaps = 107/527 (20%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAVGCVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI-----------------------------------ASEGLSFVKRAKNS 198
+ +LQR G K K
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + + C + + ++ +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKACGCEGFPFQEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ +N
Sbjct: 342 LVKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMTERKLGRRHSNQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVP 354
L P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 397 LQ----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEE 441
Query: 355 ADLIESACPEKIVEFEERRALRQPKKS---KPK-SSAAEID--QKLQALML-----DIES 403
L E+A PE + +++++ + KK KPK ++ E D Q+LM +I
Sbjct: 442 EALFEAAYPEIVAIYQKQKLEIKGKKQKSIKPKENNLPEPDDVMSFQSLMTLKPTSEIFH 501
Query: 404 ENSTSSNASFSSRVVM-SEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAE 462
+ ++ N S + E +A+ L + L+A+ + + S P KA
Sbjct: 502 KQNSKLNLGISPEPTLPQESISASLHSLLLPKNAPCLNAQEQFMS--SSRPLAIQQIKAV 559
Query: 463 IIDLVSPSP---VQCRNVSRIREMSDQPINTIELSDSETEKSPELER 506
L+S S C N+S I +D ++TI+ + SPE++R
Sbjct: 560 TESLISESSQPGTSCHNISMI---TDLHLSTIDWEGTSFSNSPEIQR 603
>gi|328792793|ref|XP_001120033.2| PREDICTED: flap endonuclease GEN-like [Apis mellifera]
Length = 713
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%), Gaps = 18/181 (9%)
Query: 15 LNGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 72
L G PA+K +T +R + SG + S+++ ++F ++ E K + +
Sbjct: 73 LEGKAPALKYNTIAKRNDIRSG---------FQEKKSIQKKGRTQFKKILNECKEMLEYM 123
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-------GERGY 125
G+ C++G EAEA CA LN + L DGC S DSD FL+GA+ VYR+ G G
Sbjct: 124 GLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRNFCTSAQGNRGGTGGA 183
Query: 126 VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIA 185
V Y ++ IE+ L GRN +I LALL G DY G+ G+G E+A ++ K V + +++RI
Sbjct: 184 VDEYRLEKIEKVLQLGRNKMIVLALLCGCDYDDGLNGVGKEAAMKLFKIVENKDIIERIK 243
Query: 186 S 186
+
Sbjct: 244 N 244
>gi|426223166|ref|XP_004005748.1| PREDICTED: flap endonuclease GEN homolog 1 [Ovis aries]
Length = 931
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 162/377 (42%), Gaps = 66/377 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 128 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDTFLYGAQTVY 187
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A +++K
Sbjct: 188 RNFTMNTKDPHVDCYTMSSIKTKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIK 247
Query: 174 SVGDNVVLQRI----------ASEGLSFVKRAK-------NSKKEGWSFKC-----NNKE 211
+ +LQR S+ + K A S K+ C +
Sbjct: 248 ILKGQSLLQRFNQWNEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERIGCKLCQTDRYC 307
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARL---- 267
E + E H + E S + + C S + H V + L +L
Sbjct: 308 EPHDYEYCCPCEWHRAEHERQLSTIENNIKKKAC-SCEGFPFHEVTQEFLLNKDKLMKAI 366
Query: 268 ----------HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
+ + +WP E +L + D+ R+ +N L
Sbjct: 367 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLTLLTHYDMTERKLGRRNSNQLQ-------- 418
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEK 365
P++ I+K+R G CFE+ WE E Y + +V L E+A PE
Sbjct: 419 --PIR-----IVKNRIRNGVHCFEIEWEKPEHYATEDKHGELALQTVEEESLFEAAYPEI 471
Query: 366 IVEFEERRALRQPKKSK 382
+ ++++++ + KK K
Sbjct: 472 VAIYQKQKSENKGKKQK 488
>gi|350420439|ref|XP_003492509.1| PREDICTED: flap endonuclease GEN-like [Bombus impatiens]
Length = 724
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 14/179 (7%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGV 74
L G P +K T +R + S + + + ++F+ ++ E K + +G+
Sbjct: 73 LEGKAPTLKHKTIAKRNDVRS-------GFREKKTASKGGRTQFNRILNECKEMLQLMGL 125
Query: 75 PCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL---GER----GYVV 127
C++G EAEA CA LN + L DGC S DSD FL+GA+ VYR+ G R G V
Sbjct: 126 ACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRNFCTSTQGNRGSSGGAVD 185
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 186
Y+++ IER L GRN +I LALL G DY+ G+ G+G E+A ++ K V D +LQR+ S
Sbjct: 186 EYKLEKIERLLELGRNKMIALALLCGCDYNDGLNGVGKEAAMKLFKIVNDKDILQRMKS 244
>gi|405969706|gb|EKC34660.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 955
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 156/337 (46%), Gaps = 66/337 (19%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RRN F+ +KE + LGVP + EAEA CA LN + D C ++D D FL+G
Sbjct: 108 RRN----FNACLKECCEMLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDAFLYG 163
Query: 111 ARTVYRDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESA 168
ARTVYR+ + + +V CY M D+E +LG R L+ +ALLLG DY +GV G+G E A
Sbjct: 164 ARTVYRNFTMNTKDPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPGVGVERA 223
Query: 169 CQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 228
+++ ++ + VL+R E WS S+ + V+ + ++
Sbjct: 224 IKMMNALPSSNVLKRF----------------ETWS--------SMPESCCVDTVEVYIR 259
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTD 283
R+ VI + K + +H+ + R L C +WP E T
Sbjct: 260 RKALL--VIQEFFQEK----------KKTPRHISEWCRPSMSKLQVFCLNKLEWPVEYTV 307
Query: 284 EYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE 343
E +LP I D+ ++L ++T L VP + I+KSR G C+E+ W
Sbjct: 308 EKVLPLITLWDM---SDLTSSTPQTDRHL----VPKQ-----IVKSRVRHGVACYEILWN 355
Query: 344 E-------SYGLKSSVVPADLIESACPEKIVEFEERR 373
+ S + ++ L S+ P+ + +F++ +
Sbjct: 356 QPESDSGVSGDVYRTIEEQVLFRSSYPQIVAQFDKEQ 392
>gi|6522575|emb|CAB62019.1| hypothetical protein [Arabidopsis thaliana]
Length = 224
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 133/234 (56%), Gaps = 40/234 (17%)
Query: 317 VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEF------- 369
+P KCP++ IIK+RK+QG+ECFEVSW + GL+SS+VPADL+E ACPEKI+EF
Sbjct: 1 MPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEKMAAK 60
Query: 370 --EERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAAT 427
+ + +Q + S P S++ ++ L+ LD+ NST S SR + E
Sbjct: 61 KKKPKPKQKQKETSSPTKSSSLVELSLELQHLDL---NST----SLVSRSTLEEA-EQEN 112
Query: 428 EIDLTRRQDL--LLDAESKSNAN------------MSCYPTGSTAAKAEIIDLVSPSP-V 472
E +++ D L+D+ + N N MS +P + E+IDL+SP P
Sbjct: 113 EQQNSKKHDYLRLIDSPDRENCNNAWSNRDRLGVGMSSFP---LYPETEVIDLISPCPEA 169
Query: 473 QCRNVSRI---REMSDQPINT-IELSDSETEKSPELERKARALRMFIASIRDDI 522
+ R+VSR ++ D + T IELSDSET+ E +KAR LR+F+ +IR DI
Sbjct: 170 RSRSVSRSYQEQKSHDHQLETVIELSDSETDDE-EHCKKARELRIFLQNIRKDI 222
>gi|366994113|ref|XP_003676821.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
gi|342302688|emb|CCC70465.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
Length = 1000
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 31/237 (13%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI++ + L GVP + EAEAQCA L L DG + DSD+FLFG +Y++++
Sbjct: 740 MIQDVQELLSRFGVPYITAPMEAEAQCAELLQLKLVDGVVTDDSDVFLFGGSKIYKNMF- 798
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I R LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 799 HEKNYVEFYDSESILRNLGLDRENMIELAELLGSDYTNGIKGMGPVSSLEVLAEFGNLKE 858
Query: 181 LQRIASEGLSFVKRAKNSKKEGWS-FKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
+ +EG F K+ K+EG + F+ + ++ +N +I L P V DA
Sbjct: 859 FRNWYNEG-QFDKK----KQEGETKFQKDLRKRLVNNKI-------VLDSNFPSELVHDA 906
Query: 240 YSNPKCYSADSEAVH------RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
Y NP+ D+ A +L L HA WP EK+DE ++P I
Sbjct: 907 YINPEV-DHDTTAFKWGLPDLDLLRLFLKTHA----------GWPQEKSDEVLIPLI 952
>gi|47077235|dbj|BAD18538.1| unnamed protein product [Homo sapiens]
Length = 908
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 169/388 (43%), Gaps = 87/388 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI-----------------------------------ASEGLSFVKRAKNS 198
+ +LQR G K K
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + + C + + +N +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ + +N
Sbjct: 342 LVKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMIERKLGSRNSNQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVP 354
L P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 397 LQ----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEE 441
Query: 355 ADLIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + +++++ + KK K
Sbjct: 442 ESLFEAAYPEIVAVYQKQKLEIKGKKQK 469
>gi|194018531|ref|NP_872431.3| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|194018535|ref|NP_001123481.1| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|290457644|sp|Q17RS7.2|GEN_HUMAN RecName: Full=Flap endonuclease GEN homolog 1
Length = 908
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKE 211
+ +LQR +S L K+ K+ ++ G K +
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAVYQKQKLEIKGKKQK 469
>gi|109658672|gb|AAI17207.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
Length = 908
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 169/388 (43%), Gaps = 87/388 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI-----------------------------------ASEGLSFVKRAKNS 198
+ +LQR G K K
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + + C + + +N +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ + +N
Sbjct: 342 LVKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMIERKLGSRNSNQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVP 354
L P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 397 LQ----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEE 441
Query: 355 ADLIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + +++++ + KK K
Sbjct: 442 ESLFEAAYPEIVAVYQKQKLEIKGKKQK 469
>gi|109658826|gb|AAI17205.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
gi|313883890|gb|ADR83431.1| Gen homolog 1, endonuclease (Drosophila) (GEN1), transcript variant
2 [synthetic construct]
Length = 908
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 169/388 (43%), Gaps = 87/388 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI-----------------------------------ASEGLSFVKRAKNS 198
+ +LQR G K K
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + + C + + +N +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ + +N
Sbjct: 342 LVKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMIERKLGSRNSNQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVP 354
L P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 397 LQ----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEE 441
Query: 355 ADLIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + +++++ + KK K
Sbjct: 442 ESLFEAAYPEIVAVYQKQKLEIKGKKQK 469
>gi|344280345|ref|XP_003411944.1| PREDICTED: flap endonuclease GEN homolog 1 [Loxodonta africana]
Length = 739
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 167/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNANGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ +A+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGVAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKE 211
++ +LQR + + VK+ K+ ++ G K +
Sbjct: 228 TLRGQSLLQRFNQWNEKSCYSDTQIQVVKKLAHCSVCSHPGSPKDHERNGCKLCKSDRYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H ++R+ + V + C S + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCEWHRMERDRQLNAVENNIKKKAC-SCEGFPFHEVIQEFLLNKNKLLKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ N L
Sbjct: 347 RYQRPDLLLFQRFTFEKMEWPNHYACEKLLVLLTHYDMMERKLGRRSCNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYG---------LKSSVVPADLIESACPE 364
P++ I+K+R G CFE+ WE + Y + ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPDHYATEDKEHEELILQTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAIYQKQKLEIKGKKQK 469
>gi|156836721|ref|XP_001642408.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112928|gb|EDO14550.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1037
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 19/238 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+ + L G+P + EAEAQCA L L L DG + DSD+FLFG +Y++++
Sbjct: 776 MVIAVQELLSRFGIPYIVAPMEAEAQCAELLLLKLVDGIITDDSDVFLFGGAKIYKNMF- 834
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y++ I L R ++I LALLLGSDY+ GV+GLGP + +++ G
Sbjct: 835 QEKKYVEFYDVQSINSNLALDRKNMIDLALLLGSDYTNGVKGLGPVLSMEVLADFGTLER 894
Query: 181 LQRIASEGLSFVKRAKNSKKEGWS-FKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
+ EG+ F K SK+E S F+ + +++ + E+ L E P VID+
Sbjct: 895 FKEWYDEGM-FDK----SKQESDSKFRKDLRKKLIKNEV-------VLSSEFPSKLVIDS 942
Query: 240 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
Y NP+ + V + + Q+ WP EK+DE ++P I + + R+
Sbjct: 943 YINPEVDHDKTSFVWGTPDLDMLREFMRRQIG-----WPQEKSDEILIPLIKDINKRK 995
>gi|355565476|gb|EHH21905.1| hypothetical protein EGK_05073 [Macaca mulatta]
Length = 907
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 169/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSFKCNNKE- 211
+ +LQR + + L K A K+ ++ G ++K
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCISDKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C S + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCDWHRTEHDRQLSEVENNMKKKAC-SCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAIYQKQKLEIKGKKQK 469
>gi|367004070|ref|XP_003686768.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
gi|357525070|emb|CCE64334.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
Length = 1051
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIK + L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 790 MIKSVQELLTRFGIPYIVAPMEAEAQCAELLKLKLVDGIITDDSDVFLFGGSKVYKNMF- 848
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ D + +LG R++LI LALLLGSDY+ G++G+GP S +I+ G
Sbjct: 849 HEKNYVEFYDQDKLTVQLGLERSNLIDLALLLGSDYTSGIKGIGPVSGIEIIAEFGSLEN 908
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ +G + KN++K F+ + +++ + EI L P + V +AY
Sbjct: 909 FRDWYMDG----QFDKNNQKTESKFQKDLRKKLVKNEI-------ILDSNFPSAAVRNAY 957
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292
P+ S + V + + L +V +W EK+DE ++P I +
Sbjct: 958 LYPEVDSDKTNFTWGVPDLDMLRTFMLKEV-----RWTQEKSDEVLIPLIKD 1004
>gi|365983062|ref|XP_003668364.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
gi|343767131|emb|CCD23121.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
Length = 1021
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++ + L G+P + EAEAQCA L +L DG + DSD+FLFG VY++++
Sbjct: 760 MVQDVQDLLSRFGIPFIVAPMEAEAQCAELLHLNLVDGIVTDDSDVFLFGGSKVYKNMF- 818
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ I R +G R ++I +A LLGSDY+ GV+G+GP S+ +I+ G+
Sbjct: 819 HEKNYVEFYDSASILRNIGLDRINMIEMAQLLGSDYTNGVKGMGPVSSLEIIAEFGNLRK 878
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ EG K+ +N K F+ + ++ + EI + P V DAY
Sbjct: 879 FKEWYEEGQFNEKKQENESK----FEKDLRKRLVKNEIVFDSN-------FPSELVKDAY 927
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
NP+ ++ + L L + + WP EK+DE ++P I + + R+
Sbjct: 928 LNPEVDHDKTKFIWNFPDLDL-----LREFLKRKIGWPQEKSDEVLIPLIQDINKRK 979
>gi|383418083|gb|AFH32255.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
gi|383418085|gb|AFH32256.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
Length = 907
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 168/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSF-KCNNKE 211
+ +LQR + + L K A K+ ++ G K +
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C S + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCDWHRTEHDRQLSEVENNMKKKAC-SCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAIYQKQKLEIKGKKQK 469
>gi|150865308|ref|XP_001384465.2| hypothetical protein PICST_35911 [Scheffersomyces stipitis CBS
6054]
gi|149386564|gb|ABN66436.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 992
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 119/237 (50%), Gaps = 18/237 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + L G+P + EAEAQCA L L DG + DSD FLFG VY++++
Sbjct: 728 MITDVQELLRRFGIPYITAPMEAEAQCAELVKIGLVDGIITDDSDCFLFGGTKVYKNMF- 786
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ YV CY DD+ K+G R +LI LALLLGSDY++G++G+GP A +I+ G
Sbjct: 787 NQKQYVECYSQDDVVDKIGLTRKNLIELALLLGSDYTEGIKGIGPVLAMEILAEFGSLKN 846
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
++ E K K+ KK+ + + N N ++ L P S V DAY
Sbjct: 847 FKKWFDEK---TKTVKSDKKDQTALEKNLLGRIRNGKL-------FLPERFPDSVVFDAY 896
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+P+ SE V + ++ + +W +K DE ++P I RD+ R
Sbjct: 897 EHPEVDHDRSEFKWGVPNLDQIRSFLMYNL-----RWTQDKVDEVMIPLI--RDMNR 946
>gi|109102065|ref|XP_001092423.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Macaca
mulatta]
gi|109102069|ref|XP_001092651.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 4 [Macaca
mulatta]
Length = 907
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 168/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSF-KCNNKE 211
+ +LQR + + L K A K+ ++ G K +
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C S + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCDWHRTEHDRQLSEVENNMKKKAC-SCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAIYQKQKLEIKGKKQK 469
>gi|332253767|ref|XP_003276003.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Nomascus
leucogenys]
gi|332253769|ref|XP_003276004.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Nomascus
leucogenys]
Length = 907
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 170/388 (43%), Gaps = 87/388 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ +++E + LG+P ++ EAEA CA LN +GC ++D D FL+GA+TVY
Sbjct: 108 SHFTSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVNGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI-----------------------------------ASEGLSFVKRAKNS 198
+ +LQR G K K
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + + C + + +N +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYCCPCEWHCTEHDRQLNEVENNIKKKACSCEGFPFHEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ + +N
Sbjct: 342 LVKVITYRRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMIERKLGSRNSNQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVP 354
L P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 397 LQ----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEE 441
Query: 355 ADLIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + +++++ + KK K
Sbjct: 442 ESLFEAAYPEIVAVYQKQKLEIKGKKQK 469
>gi|149728133|ref|XP_001503466.1| PREDICTED: flap endonuclease GEN homolog 1 [Equus caballus]
Length = 908
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 167/387 (43%), Gaps = 86/387 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI-----------------------------------ASEGLSFVKRAKNS 198
+ +L+R G K +
Sbjct: 228 ILKGQSLLERFNQWNEKSGYSNPQPQVIKKLAHCSVCSHPGSPKDHEHNGCKLCKTDRYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + + C + + +N ++ ++++ PF +VI + + +
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLNAVENGIKKKACSCEGFPFPEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ +N
Sbjct: 342 LVKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMIERKLGRRNSNQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPA 355
L P++ I+K+R G CFEV WE E Y ++ ++
Sbjct: 397 LQ----------PIR-----IVKTRVRNGVHCFEVEWEKPEHYAIEDEYGELVLQTIEEK 441
Query: 356 DLIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + +++++ + KK K
Sbjct: 442 SLFEAAYPEIVAIYQKQKLEIKGKKQK 468
>gi|355751124|gb|EHH55379.1| hypothetical protein EGM_04579 [Macaca fascicularis]
Length = 907
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 168/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSF-KCNNKE 211
+ +LQR + + L K A K+ ++ G K +
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C S + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCDWHRTEHDRQLSEVENNMKKKAC-SCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAIYQKQKLEIKGKKQK 469
>gi|50302949|ref|XP_451412.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640543|emb|CAH03000.1| KLLA0A09427p [Kluyveromyces lactis]
Length = 1011
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 120/238 (50%), Gaps = 21/238 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI E ++L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 750 MIHEIQSLLSRFGIPYITAPMEAEAQCATLLQLKLVDGVITDDSDVFLFGGTHVYKNMF- 808
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y +D ++KLG R+ LI LA LLGSDY+ G+RG+GP +I+ G
Sbjct: 809 QEKNYVEYYSLDLFDQKLGLDRDKLIQLAQLLGSDYTPGLRGIGPVMGVEILAEFGSLKE 868
Query: 181 LQRIASEGLSFVKRAKNSKKEG-WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
+ +EG F K+ K EG +F+ ++ ++ EI L P V DA
Sbjct: 869 FAKWYNEG-QFDKQ----KLEGETAFQKQLRKRLVSNEI-------ILDDNFPSEAVYDA 916
Query: 240 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
Y +P + D++ V +L Q W K+DE ++P I RDL +
Sbjct: 917 YIHP---TVDADKTKFVWGSPDLD--KLRSFLQQTIGWDKAKSDEVLIPLI--RDLNK 967
>gi|402890148|ref|XP_003908353.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Papio anubis]
gi|402890150|ref|XP_003908354.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Papio anubis]
gi|402890152|ref|XP_003908355.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Papio anubis]
Length = 906
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 87/388 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI-----------------------------------ASEGLSFVKRAKNS 198
+ +LQR G K K
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + + C + +N +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYCCPCDWHRTEHDRQLNEVENNMKKKACSCEGFPFHEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ + +N
Sbjct: 342 LVKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMIERKLGSRNSNQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVP 354
L P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 397 LQ----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEE 441
Query: 355 ADLIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + +++++ + KK K
Sbjct: 442 ESLFEAAYPEIVAIYQKQKLEIKGKKQK 469
>gi|406604494|emb|CCH44056.1| DNA repair protein [Wickerhamomyces ciferrii]
Length = 1010
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG VY++++
Sbjct: 742 TMIKEVQELLARFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGGKVYKNMF 801
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
E+ YV Y DIER+LG R LI +A LLGSDY++G++G+GP +A +I+ GD
Sbjct: 802 -HEKHYVEFYSSQDIERELGLTRQKLIEIAQLLGSDYTEGLKGIGPVNAMEILSHFGD 858
>gi|242041837|ref|XP_002468313.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
gi|241922167|gb|EER95311.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
Length = 1489
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 132/273 (48%), Gaps = 50/273 (18%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 867 SEMFAECQELLQMFGLPYIIAPTEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNI 926
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
+ +R YV Y M DIE +LG R LI +ALLLGSDY++GV G+G +A ++V + +
Sbjct: 927 F-DDRKYVETYFMKDIESELGLTREQLIRMALLLGSDYTEGVSGIGIVNAIEVVHAFPEE 985
Query: 179 VVLQR-----------------IASEGLSFVKR----AKNSKKEGWSFKC---NNKEESL 214
LQ+ + + G S ++ + K +G +C ++ ++S
Sbjct: 986 DGLQKFKEWIESPDPSIFGKLHVEASGRSKKRKLGGNDSDGKGKGLEPECIQGSDDKQSS 1045
Query: 215 NQEINVNGTDHSLQRET----------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH 264
N+ +V S R P V++AY +P+ + + F
Sbjct: 1046 NEAEHVKEIFMSKHRNVSKNWHIPATFPSESVVNAYISPQVDN----------SMEPFSW 1095
Query: 265 AR-----LHQVCAQFFQWPPEKTDEYILPKIAE 292
R L ++C + F W EK DE ++P + E
Sbjct: 1096 GRPDLGLLRKLCWERFGWGKEKADELLIPVLRE 1128
>gi|296224442|ref|XP_002758061.1| PREDICTED: flap endonuclease GEN homolog 1 [Callithrix jacchus]
Length = 909
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 136/519 (26%), Positives = 223/519 (42%), Gaps = 93/519 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAVGRVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY+M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYKMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSF-KCNNKE 211
+ +LQR + E L K A K+ ++ G K N
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPEPLVTKKLAHCSICSHPGSPKDHERNGCRLCKSNKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKAC-GCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGRRHSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ + L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYVMEDKQHGEFALLTTEEEALFEAAYPE 451
Query: 365 KIVEFEERR--ALRQPKKS-KPK-SSAAEID--QKLQALML-----DIESENSTSSNASF 413
+ +++++ R+ +KS KPK ++ E D Q+ M +I + S+ N
Sbjct: 452 IVAIYQKQKLEIKRKKQKSIKPKENNLPEPDDVMSFQSHMTLKPTSEIFHKQSSKLNLGI 511
Query: 414 SSRVVMSEDWTAATEIDLTRRQDLLLDAESKSNAN----MSCYPTGSTAAKAEIIDLVSP 469
S + ++++ +A+ L LL SNA S P KA L+S
Sbjct: 512 SPELKLTQESISASLHSL-----LLPKNAPYSNAQEQFMSSPRPLAIQQIKAVTKSLISE 566
Query: 470 SP---VQCRNVSRIREMSDQPINTIELSDSETEKSPELE 505
S C N+S I +D ++TI+ + SP ++
Sbjct: 567 SSQPGTSCHNISVI---TDLHLSTIDWEGTSFSNSPVIQ 602
>gi|156555588|ref|XP_001605190.1| PREDICTED: flap endonuclease GEN-like [Nasonia vitripennis]
Length = 736
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 101/179 (56%), Gaps = 18/179 (10%)
Query: 15 LNGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 72
L G+ P +K +T +R + G E+ + +K + S F+ ++KE + + +
Sbjct: 73 LEGAAPTLKHNTIAKRNDIRHGREIKKTNKKAGR---------SRFNYVLKECEEMLKYM 123
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL---GER----GY 125
G+ C++G EAEA CA LN + L DGC S DSD L+GA+ VYR+ G R G
Sbjct: 124 GLTCVKGYGEAEAMCAYLNEDGLVDGCISQDSDCLLYGAKIVYRNFCTSTQGNRTTSSGS 183
Query: 126 VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRI 184
+ Y M+ I++ GRN +I LAL+ G DY +G+ G+G E+A ++ K V D+ +L R+
Sbjct: 184 IDEYSMEKIQQVFNLGRNKMIALALMCGCDYDEGLSGVGKEAALKLFKIVDDDEILYRM 242
>gi|448530440|ref|XP_003870064.1| Rad2 protein [Candida orthopsilosis Co 90-125]
gi|380354418|emb|CCG23933.1| Rad2 protein [Candida orthopsilosis]
Length = 995
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 18/253 (7%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 717 EKLQKAKRDSDEVTENMISDVQELLKRFGIPYITAPMEAEAQCAELFRIGLVDGIITDDS 776
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG +Y++++ ++ +V CY DDIE ++G R +LI LA+LLGSDY+QG++G+G
Sbjct: 777 DCFLFGGDRIYKNMF-NQKQFVECYFKDDIEDRIGLSRENLIELAILLGSDYTQGIKGIG 835
Query: 165 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 224
P A +I+ G L+R S F ++ K +K + + + +L I NG
Sbjct: 836 PVLAVEILAEFGS---LKRFKS---WFDEKTKTTKLDQVTLTPLQR--NLTNRIK-NGKL 886
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 284
+ L P + +AY +P+ S SE + + ++ V W E+ DE
Sbjct: 887 Y-LPDNFPDKVIFEAYQHPEVDSDKSEFKWGIPNLDQIRSFLMYNV-----NWSQERVDE 940
Query: 285 YILPKIAERDLRR 297
++P + RDL +
Sbjct: 941 VMVPLV--RDLNK 951
>gi|395828598|ref|XP_003787457.1| PREDICTED: flap endonuclease GEN homolog 1 [Otolemur garnettii]
Length = 884
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 167/385 (43%), Gaps = 84/385 (21%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSLLKECLEMLECLGIPWVQAAGEAEAMCAHLNAGGHVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
++ + + +V CY M ++ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 KNFTMNTKDPHVDCYTMSSVKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRIAS-----------------------------------EGLSFVKRAKNS 198
+ +LQR G +
Sbjct: 228 ILKGQSLLQRFNQWKETSYNSNPQPLVAKKPAHCSVCSHPGSPKDHERNGCRLCNSDRYC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ + ++C + E ++G +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYRCPCEWHLTEHERQLSGVENNIKKKACSYEGFPFHEVIQE------FLLNKDK 341
Query: 253 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
+ +V+ LFQ L ++ +WP E +L + D+ R+ ++
Sbjct: 342 LAKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMTERKLGRRSSDQ 396
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS------SVVPADL 357
L T I+K+R G CFE+ WE E Y ++ ++ L
Sbjct: 397 LQ---------------PTRIVKTRIRNGVHCFEIEWEKPEHYAIEEPGESILTIEEESL 441
Query: 358 IESACPEKIVEFEERRALRQPKKSK 382
E+A PE + +++++ + KK K
Sbjct: 442 FEAAYPEIVAIYQKQKLEIKGKKQK 466
>gi|301121670|ref|XP_002908562.1| DNA repair protein, putative [Phytophthora infestans T30-4]
gi|262103593|gb|EEY61645.1| DNA repair protein, putative [Phytophthora infestans T30-4]
Length = 483
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 19/258 (7%)
Query: 41 DKNLDKMSSLR-RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
D +L K+ S + R+ M+ E +L GVP L EAEAQCA L L DG
Sbjct: 174 DTDLKKLRSRQLRDAEGITDDMVAEVMSLLRLFGVPFLVSPMEAEAQCAALEQLGLVDGV 233
Query: 100 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 159
+ DSDIF FG + VY++I+ ++ +V + DIE++LGF R +I LALLLGSDY+ G
Sbjct: 234 ITDDSDIFPFGGQRVYKNIFHHQK-FVEAFSARDIEQELGFSREQIIALALLLGSDYTDG 292
Query: 160 VRGLGPESACQIVKSVGDNVVLQRIASEGLSF--VKRAKNSKKEGWSFKCNNKEESLNQE 217
VRG+G +A +I + L+ F + A+ K++ ++++E++ +
Sbjct: 293 VRGIGIVNATEIAAAYPKIEGLREFKDWVGEFNVAEEAQRGKEDESGGDSDSEDETVRER 352
Query: 218 INVNGTDHSLQR-------ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV 270
+ H+ R E P QV+ AY +P+ +D+ + A L
Sbjct: 353 FQRS---HATARRKWELGDEFPSKQVVQAYMSPQVDRSDAR-----FSWSAPDVASLRNY 404
Query: 271 CAQFFQWPPEKTDEYILP 288
CA+ F W +K+D + P
Sbjct: 405 CAKAFGWDQQKSDGVLKP 422
>gi|157821963|ref|NP_001100187.1| flap endonuclease GEN homolog 1 [Rattus norvegicus]
gi|149050926|gb|EDM03099.1| similar to RIKEN cDNA 5830483C08 gene (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 908
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 133/583 (22%), Positives = 241/583 (41%), Gaps = 118/583 (20%)
Query: 3 SYL-HYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM 61
SYL + L+ + G P +K +R TQ S ++ S F +
Sbjct: 61 SYLTQMNVKLVFVMEGEPPKLKADVMNKR-------TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 122 ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 179
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 174 TKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQILKGQS 233
Query: 180 VLQRIAS----------------------------------EGLSFVKRAKNSKKEGWSF 205
+LQR G + K + + + +
Sbjct: 234 LLQRFNQWTEEPGYSVPQSAAKKVVHCSVCSHPGSPKDHERNGCTLCKSDRYCEPHDYEY 293
Query: 206 KCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
C + + +N +++++++ PF +VI + + K +++L
Sbjct: 294 LCPCEWHQTDHNRQLNEIENNIKKKACSCEGFPFHEVIQEFLSNK---------NKLLKP 344
Query: 260 HLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPL 314
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 345 IRYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKLGRKTSNQLQ------- 397
Query: 315 QKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACP 363
P++ I+K R G C E+ WE E Y ++ ++ A L E+A P
Sbjct: 398 ---PIR-----IVKPRIRNGVCCLEIEWEKPEHYSVEDTQPGGLDLLTIEEASLFEAAYP 449
Query: 364 EKIVEFEERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDW 423
E + ++++++ + KK K I K + L ES++ SS + + +
Sbjct: 450 EVVAIYQKQQSETKGKKQK------NIKIKPKGSHLP-ESDDVISSQSLITLEPISKAFP 502
Query: 424 TAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSP-----VQCRNVS 478
+ DL D +L ES S ++S + + A + + + PSP Q ++VS
Sbjct: 503 KQNPKFDLEISPDPILAQESTS-PSLSSFVSPENALGLNLQEQLMPSPRTLAVKQTKDVS 561
Query: 479 ---------------RIREMSDQPINTIELSDSETEKSPELER 506
I ++D ++TI+ + + SP ++R
Sbjct: 562 NFLVSECSQPSSSSHNISVITDLHLSTIDWAGTSFSNSPAVQR 604
>gi|444316930|ref|XP_004179122.1| hypothetical protein TBLA_0B07870 [Tetrapisispora blattae CBS 6284]
gi|387512162|emb|CCH59603.1| hypothetical protein TBLA_0B07870 [Tetrapisispora blattae CBS 6284]
Length = 1155
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 124/238 (52%), Gaps = 19/238 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MI + + L G+P + EAEAQCA L+NL+ L DG + DSD+FLFG VY++++
Sbjct: 894 MILDVQELLSRFGIPFITAPMEAEAQCAELINLK-LVDGIVTDDSDVFLFGGTKVYKNMF 952
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
E+ YV Y+ D I R LG R +I L LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 953 -HEKHYVEYYDNDVIFRNLGLDREYMIELVELLGSDYTTGIKGMGPVSSMEVLAEFGNLK 1011
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
+ +EG F K SK+E K N ++ L +++ NG + + P S V DA
Sbjct: 1012 NFKEWYNEG-QFDK----SKQE----KENKFQKDLRKKLVKNGV--IFENDFPNSLVSDA 1060
Query: 240 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
Y NP+ DS A + L W EK+DE ++P I + R+
Sbjct: 1061 YMNPEV-DHDSTAFKWGVP----DLDMLRTFMRNKIGWQKEKSDEILIPLIRTINQRK 1113
>gi|388583607|gb|EIM23908.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 1046
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E + L + G+P + EAEAQCA L +L D + DSD+FLFGA VY++++
Sbjct: 721 MTGEIQKLLRAFGIPYITAPMEAEAQCAKLAQMNLVDAVITDDSDVFLFGAPIVYKNMF- 779
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+R +V CY DIER L R+ LI LA +LGSDY+ G G+GP A +++
Sbjct: 780 NDRQFVECYVSSDIERDLSLSRDRLIELAHILGSDYTNGFPGVGPVMAMELLADFAHENT 839
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L + S F+ N K++S N L +E P QV AY
Sbjct: 840 LVGFRDWWIKVQNGKDTSNDTSTRFRKNFKKKSKNL---------FLDKEFPDPQVKGAY 890
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
K S++ E V + L + + WP K D+ I+P
Sbjct: 891 YGAKTDSSNEEFVWGIP-----NLDELREYLYNYLGWPAHKVDDTIIP 933
>gi|401625605|gb|EJS43605.1| rad2p [Saccharomyces arboricola H-6]
Length = 1034
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 17/237 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 774 MIKEVQELLSRFGIPYVTAPMEAEAQCAELLQLKLVDGIITDDSDVFLFGGTKVYKNMF- 832
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G
Sbjct: 833 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGSLKN 892
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F K + ++ + F+ +++ +N E+ L + P V DAY
Sbjct: 893 FKDWYNNG-QFDKLKQETENK---FEKELRKKLVNNEV-------ILDEDFPSVMVYDAY 941
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
P+ + V + + + Q+ WP EK+DE ++P I + + R+
Sbjct: 942 MRPEVDHDTTPFVWGLPDLDMLRSFMKSQIG-----WPHEKSDEILIPLIRDVNSRK 993
>gi|303270955|ref|XP_003054839.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462813|gb|EEH60091.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 237
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 117/234 (50%), Gaps = 25/234 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E + L G+P + +EAEAQCA L+ E D + DSD FLFGA+T+YR++
Sbjct: 1 MHAEVQQLLTLFGIPYIIAPQEAEAQCAWLDREGFVDAVITDDSDAFLFGAKTIYRNV-F 59
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ YV Y+ + ++ LG R + LALLLGSDY++GV G+G +A + VV
Sbjct: 60 ESKKYVEFYDANRVDADLGLDRAKMAQLALLLGSDYTEGVTGVGIVNALE--------VV 111
Query: 181 LQRIASEGLS----FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQV 236
L EGL+ +V ++ + K + K +L + L R+ P +V
Sbjct: 112 LNFPGVEGLTKFAEWVGESEFTGKPAAIREFKLKHRTLKKA-------WELPRDFPSERV 164
Query: 237 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
+DAY+NP S D+ + RL C + F W P +TD+ +LP +
Sbjct: 165 LDAYANP---SVDASREKFEWGEPDLDALRL--FCGEHFAWRPTQTDDLLLPVV 213
>gi|255721529|ref|XP_002545699.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
gi|240136188|gb|EER35741.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
Length = 963
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 689 EKLQKAKRDSDEVTEAMINDVQELLRRFGIPFITAPMEAEAQCAELFRIGLVDGIVTDDS 748
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG +Y++++ ++ YV CY DD+ K+G R LI LALLLGSDY++G++G+G
Sbjct: 749 DCFLFGGDKIYKNMF-DQKQYVECYMQDDLSTKMGLTRKKLIELALLLGSDYTEGIKGIG 807
Query: 165 PESACQIVKSVGD 177
P A +I+ GD
Sbjct: 808 PVLAMEILAEFGD 820
>gi|73980577|ref|XP_540093.2| PREDICTED: flap endonuclease GEN homolog 1 [Canis lupus familiaris]
Length = 908
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 157/366 (42%), Gaps = 65/366 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRIAS---------EGLSFVKRA-----------KNSKKEGWSF-KCNNKEE 212
+ +LQR + L+ K A K+ + G K N E
Sbjct: 228 ILKGQSLLQRFTQWSEESCSDPQPLAIKKLAHCSVCSHPGSPKDHVRNGCKLCKTNRYCE 287
Query: 213 SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA 272
+ E H Q E V + C S + + V + L +L +V
Sbjct: 288 PHDYEYCCPCDWHRTQHERQLIAVENNIKKKAC-SCEGFPFYEVTQEFLLNKDKLVKVIR 346
Query: 273 Q------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQK 316
FQ WP E +L + D+ R+ +N L
Sbjct: 347 YQRPDLLLFQRFTLEKMEWPDHYACEKLLVLLTHYDMIERKLGRRNSNQLQ--------- 397
Query: 317 VPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEKI 366
P++ I+KSR G CFE+ WE E Y ++ ++ L E+A PE +
Sbjct: 398 -PIR-----IVKSRIRNGIHCFEIEWEKPEHYAIEDQHGELVLQTIEEKSLFEAAYPEIV 451
Query: 367 VEFEER 372
++++
Sbjct: 452 AVYQKQ 457
>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
Length = 1019
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 18/253 (7%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K+ +R+ MI++ + L G+P + EAEAQCA L L DG + DS
Sbjct: 745 EKLQKAKRDSDEVTETMIRDVQELLKRFGIPYITAPMEAEAQCAELFRMGLVDGIVTDDS 804
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG +Y++++ ++ YV CY +DI+ K+G ++ LI LA+LLGSDY++G++G+G
Sbjct: 805 DCFLFGGSRIYKNMF-NQKQYVECYIAEDIKNKIGLDQDKLIELAMLLGSDYTEGIKGIG 863
Query: 165 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 224
P A +I+ G +++ L F + AK++++ + E+ L I NG
Sbjct: 864 PVMAMEILAEFG------TLSNFKLWFDRHAKSAERPQQEYTP--LEKKLLTRIK-NGK- 913
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 284
L P S V DAY P+ DS + + ++ V QW + DE
Sbjct: 914 LFLPDGFPSSVVRDAYKRPEVDRDDSAFKWGTPSLDQIRSFLMYNV-----QWSQARVDE 968
Query: 285 YILPKIAERDLRR 297
++P I RD+ R
Sbjct: 969 VMVPLI--RDMNR 979
>gi|363752988|ref|XP_003646710.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890346|gb|AET39893.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
Length = 988
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 122/239 (51%), Gaps = 21/239 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+ + + L G+P + EAEAQCA L L DG + DSDIFLFG VY++++
Sbjct: 727 MVTQIQELLTRFGIPYVTAPMEAEAQCAELLKLKLVDGIITDDSDIFLFGGSNVYKNMFY 786
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ +V Y D I LG R+ LI+LA LLGSDY+ GV+G+GP S +I+ D
Sbjct: 787 -EKAFVEYYSSDSISLNLGLNRDMLISLAELLGSDYTTGVKGVGPVSGMEILAEFRDLET 845
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ ++G F K KN + E +F+ N + + + ++ + G + PF V +AY
Sbjct: 846 FRNWYNDG-QFDK--KNLENES-TFRKNLRRKLMKNDV-ILGDNFP----NPF--VRNAY 894
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHAR--LHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
NP+ D + + V R LH WP EK+DE + P I E + R+
Sbjct: 895 MNPEV---DHDTTNFVWGIPDLDQLRSYLHSNLG----WPSEKSDEVLGPLIRELNKRK 946
>gi|431911852|gb|ELK13996.1| Flap endonuclease GEN like protein 1 [Pteropus alecto]
Length = 903
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 171/396 (43%), Gaps = 89/396 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E L +G+P ++ EAEA CA LN DGC + D D FL+GA+TVY
Sbjct: 108 SYFKSVLRECLELLDCIGIPWVQAAGEAEAMCAYLNASGYVDGCLTDDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I +LG R++L+ LA+LLG DY +GV G+G E A +++
Sbjct: 168 RNFAMTSKDPHVDCYTMSSIMSELGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIH 227
Query: 174 SVGDNVVLQRIAS-----------------------------------EGLSFVKRAKNS 198
+ +LQR G + ++
Sbjct: 228 ILKGQSLLQRFMQWNETSCSSNEQPVTVKKLAHCSVCSHPGSLKAHERNGCELCQTERHC 287
Query: 199 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 252
+ G + C + E + +++++++ PF +VI + S +
Sbjct: 288 EPHGNEYCCPCEWHCAEHERQLIAVENNIKKKACSCEGFPFHEVIQEF-----LSNKDKL 342
Query: 253 VHRVLAQH----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTL 306
V + Q LFQ L ++ +WP E +L + D+ R+ AN L
Sbjct: 343 VQAIRCQRPNLLLFQKFSLEKM-----EWPNHYACEKLLVLLTHYDMTERKLGRRNANQL 397
Query: 307 ALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPAD 356
P++ I+K++ G CF++ WE E Y ++ ++
Sbjct: 398 Q----------PIR-----IVKNQIRNGVRCFQIEWEKPEHYDIEDKHGESVLQTIEEES 442
Query: 357 LIESACPEKIVEFEERR-----ALRQPKKSKPKSSA 387
L E+A PE + +++++ ++ +K+KPK+++
Sbjct: 443 LFEAAYPEIVAVYQKQKLEMKEKKQKSRKTKPKANS 478
>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
Length = 1034
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 124/265 (46%), Gaps = 41/265 (15%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+++ +R+ MI++ + L G+P + EAEAQCA L +L DG + DS
Sbjct: 755 EQLQKAKRDSDEVTETMIRDVQELLRRFGIPYITAPMEAEAQCAELLKLNLVDGIITDDS 814
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG VY++++ ++ YV CY M+DI ++G + LI LALLLGSDY++G++G+G
Sbjct: 815 DCFLFGGDKVYKNMF-NQKQYVECYIMNDINSRMGLSQEKLIDLALLLGSDYTEGIKGIG 873
Query: 165 PESACQIVKSVGDNVVLQRIASE-----------GLSFVKRA-KNSKKEGWSFKCNNKEE 212
P A +I+ G ++ E GL+ +KR+ N K G F
Sbjct: 874 PVMAMEILAEFGSLKKFKQWFDENTKTTVPPDKSGLTSIKRSLLNRIKNGTFF------- 926
Query: 213 SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA 272
L P + + DAY P+ SE V + + ++ V
Sbjct: 927 --------------LPESFPDNVIFDAYKQPEVDHDKSEFKWGVPSLDQIRSFLMYNVS- 971
Query: 273 QFFQWPPEKTDEYILPKIAERDLRR 297
W + DE ++P I RD+ R
Sbjct: 972 ----WSQARVDEVMVPLI--RDMNR 990
>gi|326527491|dbj|BAK08020.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1503
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 66/315 (20%)
Query: 32 NSGSEVTQDDKNLDKMSSLRR---NMGSE-----------FSCMIKEAKALGLSLGVPCL 77
NS S + ++ D++S LR+ ++G+E S M E + L G+P +
Sbjct: 832 NSDSHIISENNLEDEISFLRQEQVDLGNERRKLESHAESVSSEMFAECQELLQMFGLPYI 891
Query: 78 EGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERK 137
EAEAQCA + + +L DG + DSD+FLFGAR VY++I+ +R YV Y M DIE +
Sbjct: 892 IAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNIF-DDRKYVETYLMKDIESE 950
Query: 138 LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR----IASEGLSFVK 193
LG R LI +A+LLGSDY++G+ G+G +A ++V + + LQ+ I S + +
Sbjct: 951 LGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVVHAFPEEDGLQQFREWIESPDPAILG 1010
Query: 194 R---------------AKNSKKEGWSF--KC-----NNKEESLNQEI---------NVNG 222
+ S ++G S +C NN+ + Q I NV+
Sbjct: 1011 KFDVESSGSSKRRKSGGNESCEKGNSLEPECVEGSDNNQSSNETQHIKEVFMSNHRNVSK 1070
Query: 223 TDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQW 277
H + P VI+AY +P+ ++ R F R L ++C + F W
Sbjct: 1071 NWH-IPSTFPSETVINAYISPQV----DDSTER------FSWGRPDLSLLRKLCWERFGW 1119
Query: 278 PPEKTDEYILPKIAE 292
EK DE +LP + E
Sbjct: 1120 NKEKADELLLPVLKE 1134
>gi|410955794|ref|XP_003984535.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Felis catus]
Length = 913
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 160/367 (43%), Gaps = 66/367 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 117 SHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVY 176
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R +L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 177 RNFSMNTKDPHVDCYTMPSIKSKLGLDREALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 236
Query: 174 SVGDNVVLQRIA--SEGLSF-------VKR------------AKNSKKEGWSF-KCNNKE 211
+ +LQR +E SF +K+ K+ + G K +
Sbjct: 237 ILKGQSLLQRFTQWNEKPSFSDPQPVVIKKLAHCSVCSHPGSPKDHVRNGCKLCKTDRYC 296
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S V ++ C + H V+ + L +L +V
Sbjct: 297 EPHDYEYCCPCEWHRAEHDRQLSAVENSIKKKAC-GCEGFPFHEVIQEFLLNKDKLVKVI 355
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ +N L
Sbjct: 356 RYQRPDLLLFQRFTLEKMEWPSHYACEKLLVLLTHYDMIERKLGRRNSNQLQ-------- 407
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEK 365
P++ I+K+R G C E+ WE E Y ++ ++ L E+A PE
Sbjct: 408 --PIR-----IVKTRIRNGIHCLEIEWEKPEHYAMEDKHGELVLKTIEELSLFEAAYPEI 460
Query: 366 IVEFEER 372
+ ++++
Sbjct: 461 VAVYQKQ 467
>gi|291242835|ref|XP_002741315.1| PREDICTED: flap endonuclease 1-like [Saccoglossus kowalevskii]
Length = 334
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCYE 130
LGVP ++ EAEA CALLN E L DG F+ D D FL+GA+ VY+++ G G +V Y+
Sbjct: 122 LGVPYIQATGEAEAMCALLNKEGLVDGVFTEDGDAFLYGAKKVYKNLTAGSNGSHVDVYD 181
Query: 131 MDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 184
M DIE KL RN LI +ALL+G DY S GV +G +A Q++ S+GD VL+R
Sbjct: 182 MLDIEEKLTLNRNKLIAMALLMGCDYLSDGVPSVGKTNATQLMHSLGDIDVLERF 236
>gi|363732508|ref|XP_419963.2| PREDICTED: flap endonuclease GEN homolog 1 [Gallus gallus]
Length = 639
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 9/176 (5%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G P +K T +R +E+ N ++ R S F ++KE L
Sbjct: 70 LVFVMEGEAPKLKADTMSKR----NEIRYGASNKHGVARTGR---SSFKSILKECLQLLE 122
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER-GYVVCY 129
LGVP ++ EAEA CA LN + DGC ++D D+FL+GA+TVYR+ + + ++ CY
Sbjct: 123 CLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKEPHLDCY 182
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 184
M I+ KLG R SLI LA+LLG DY +G+ G+G E A ++++++ +LQR
Sbjct: 183 TMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETLRGQNLLQRF 238
>gi|336265442|ref|XP_003347492.1| Rad2 protein [Sordaria macrospora k-hell]
gi|380087974|emb|CCC05192.1| putative Rad2 protein [Sordaria macrospora k-hell]
Length = 1279
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 116/260 (44%), Gaps = 35/260 (13%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 878 RRDADEVTQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 937
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ G + +V CY ++DIE++L GR LI LA LLGSDY++G+ G+GP +A +
Sbjct: 938 GTRVYKNMFNGNK-FVECYLLNDIEKELSLGREQLIALAQLLGSDYTEGLPGVGPVTAVE 996
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEES---LNQEINVNGTDHSL 227
I L S + K+ W+ + LN L
Sbjct: 997 I---------LSEFPPSSESGPMSSLKDFKQWWTTLQSTPHPDASLLNTPFRRKFRKSHL 1047
Query: 228 QR-----ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQW 277
+ P V +AY P+ S FQ L Q Q W
Sbjct: 1048 TKLFLPLNFPSPAVFEAYLRPEVDSTPDP----------FQWGVPDLEGLRQYLMQTIGW 1097
Query: 278 PPEKTDEYILPKIAERDLRR 297
PE+TDE ++P I RD+ R
Sbjct: 1098 SPERTDEVLVPVI--RDMNR 1115
>gi|326916541|ref|XP_003204565.1| PREDICTED: flap endonuclease GEN homolog 1-like, partial [Meleagris
gallopavo]
Length = 897
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 9/176 (5%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G P +K T +R +E+ N + R++ F ++KE L
Sbjct: 70 LVFVMEGEAPKLKADTMSKR----NEMRYGASNKHGAARTGRSL---FKSILKECLQLLE 122
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER-GYVVCY 129
LGVP ++ EAEA CA LN + DGC ++D D+FL+GA+TVYR+ + + ++ CY
Sbjct: 123 CLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKEPHLDCY 182
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 184
M I+ KLG R SLI LA+LLG DY +GV G+G E A ++++++ +LQR
Sbjct: 183 TMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIETLRGQNLLQRF 238
>gi|193643497|ref|XP_001947849.1| PREDICTED: flap endonuclease GEN-like [Acyrthosiphon pisum]
Length = 477
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 46/359 (12%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGV 74
+G P +K ST +R+N +K K + +R+ + S + K+ + L +GV
Sbjct: 73 FDGEPPLLKYSTIEKRING-------NKAPIKTNIIRKRLNS----LQKQCELLLNIMGV 121
Query: 75 PCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDI 134
C+ G EAE CA+LN + +G + DSD FL+GAR VYR+ G V Y M I
Sbjct: 122 TCVYGHGEAEQLCAILNKNGIVNGIVTQDSDCFLYGARVVYRNFNASGNGSVDVYCMGSI 181
Query: 135 ERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK 193
E+ L GR+ +I L+LL G DY + GV G+G ++A + ++S+ D+ VL R L +
Sbjct: 182 EKNLKIGRSKMIALSLLCGCDYDEKGVLGIGKDTAIKFLQSLDDDAVLDR-----LRHWR 236
Query: 194 RAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY-SNPKCYSADSEA 252
K E L +I ++ + P VI+ + P C ++
Sbjct: 237 NDPVLNSAAMDIKSQTNEIKLELKIRNKAIEN---KSFPSEAVIEEFLKAPNCPEVSAKW 293
Query: 253 VHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDL 312
+ + F L ++C W E E LP + L +AN L
Sbjct: 294 ILPDINS--FIKFALTKLC-----WEREYAIEKFLPLLTRWHLMYDDKFQANIL------ 340
Query: 313 PLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEE 371
+T I+K R +G +C+E+ W +Y + +S+ P ++ P ++ +E+
Sbjct: 341 ----------MTKIVKKRVNKGIKCYEIKW-NNYEI-TSIEPQTAVQRRYPNEVSIYED 387
>gi|388858154|emb|CCF48222.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Ustilago hordei]
Length = 1592
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 127/258 (49%), Gaps = 23/258 (8%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
+ + M E M++ G+P + EAEAQCA L L DG + DSD+FLF
Sbjct: 1034 ITKQMAQEIQMMLR-------LFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLF 1086
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G +Y++++ + V C+ + D++R+LG R L+ LA LGSDY++G+ G+GP A
Sbjct: 1087 GGTRIYKNMFNNNK-IVECFLLSDMQRELGLDREKLVRLAYYLGSDYTEGLVGVGPVVAM 1145
Query: 170 QIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 228
+++ G++ +L+ + V+ +++++ +++L +++ L+
Sbjct: 1146 ELLALFPGEDGLLK--FRDWWMRVQMGQDTEEHTRGKTMRRIKKNLRNKVH-------LE 1196
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
P V+DAY NP +D A L L ++ WP KTD+Y+LP
Sbjct: 1197 PSWPEPAVLDAYYNPTVDESDEP-----FAWGLPDLDSLRTFLGEYLHWPVTKTDQYLLP 1251
Query: 289 KIAERDLRRFANLRANTL 306
I +++R A TL
Sbjct: 1252 IIERQNVRNRARGNQATL 1269
>gi|291387124|ref|XP_002710085.1| PREDICTED: Gen homolog 1, endonuclease [Oryctolagus cuniculus]
Length = 904
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 166/387 (42%), Gaps = 86/387 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E L LG+P ++ EAEA CA LN E DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKLVLRECLDLLDCLGIPWVQAAGEAEAMCAYLNAEGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ +LG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNVKDPHVDCYSMSSIKVQLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRIAS----------------------------------EGLSFVKRAKNSK 199
+ +LQR G K + +
Sbjct: 228 ILKGQSLLQRFDQWNEKSHSNPQPAVTKKLAHCSVCSHPGSPKDHERSGCRLCKSNRYCE 287
Query: 200 KEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAV 253
+ + C + + G + +++++ PF +VI + + + +
Sbjct: 288 PHDYEYCCPCEWHQTECNRRLTGVEDNIKKKACRCEGFPFQEVIQE------FLLNKDKL 341
Query: 254 HRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTL 306
+V+ LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 342 VKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMIERKLGRWNSNQL 396
Query: 307 ALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK---------SSVVPA 355
P++ I+K+R G CFE+ WE E Y + S++
Sbjct: 397 Q----------PIR-----IVKNRIRNGINCFEIEWEKPEHYVTEDKQNGQLVLSTIEEE 441
Query: 356 DLIESACPEKIVEFEERRALRQPKKSK 382
L E+A PE + ++ ++ + KK K
Sbjct: 442 SLFEAAYPEIVAVYQLQKLEIKGKKQK 468
>gi|320580410|gb|EFW94633.1| Single-stranded DNA endonuclease [Ogataea parapolymorpha DL-1]
Length = 1011
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 116/249 (46%), Gaps = 27/249 (10%)
Query: 47 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
M +R+ MI + + + G+P + EAEAQCA L L DG + DSD
Sbjct: 715 MKKQKRDADEVTVRMILDIQDMLSRFGLPYITAPMEAEAQCAELLRLGLVDGIITDDSDC 774
Query: 107 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 166
FLFG VY++++ E+ +V CY+M+D+ER LG R LI LALLLGSDY++G++G+G
Sbjct: 775 FLFGGDRVYKNMF-NEKNFVECYQMEDLERDLGLDRRMLIDLALLLGSDYTEGIKGVGKV 833
Query: 167 SACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 226
+A +I+ G L+ L + + KE + K TD
Sbjct: 834 AAMEILAEFG---TLESFKHWWLDYQNGIIDESKETTVKRKLRKSLKK--------TDLY 882
Query: 227 LQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEK 281
L E P +VI+AY +P+ SE FQ +L W EK
Sbjct: 883 LTPEFPDKRVIEAYLHPEVDHDKSE----------FQWGYPNLDKLRTFLMYNVGWGKEK 932
Query: 282 TDEYILPKI 290
D +LP I
Sbjct: 933 VDTILLPII 941
>gi|308810128|ref|XP_003082373.1| 5'-3' exonuclease (ISS) [Ostreococcus tauri]
gi|116060841|emb|CAL57319.1| 5'-3' exonuclease (ISS), partial [Ostreococcus tauri]
Length = 987
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 130/281 (46%), Gaps = 53/281 (18%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M ++ + L G+P + +EAEAQCA LN + L D + DSD+FLFGA VYR+ +
Sbjct: 623 MYRDVQELLTLFGIPYIIAPQEAEAQCAYLNEQKLVDAVITDDSDVFLFGASLVYRN-FF 681
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ Y Y D I + +G RN I LALLLGSDY++GV G+G +A +IV + +V+
Sbjct: 682 QDKKYCEVYSADRIRKDIGLDRNRFIQLALLLGSDYTEGVSGIGIVNALEIVSAFRGDVI 741
Query: 181 ------LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ------ 228
+ + E L+ V N S ++ I+ +GT+ SL
Sbjct: 742 EASKAFKEWVDLEELTMVP----------DHLLPNPSPSKSKNISDDGTEQSLAEAFKEK 791
Query: 229 -----------RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCA 272
P +V+ AY NP +V R ++ F+ + L C
Sbjct: 792 HRSLKKSWDVPENFPSIEVVKAYQNP--------SVDR--SEEPFEWGKPDVDLLRLYCV 841
Query: 273 QFFQWPPEKTDEYILPKIA---ERDL-RRFANLRANTLALG 309
+ F W + TD+ + P + ERD RR + T A+G
Sbjct: 842 KNFAWTRDATDQVLEPMMKAWEERDAQRRIDSFFETTAAVG 882
>gi|290992099|ref|XP_002678672.1| predicted protein [Naegleria gruberi]
gi|284092285|gb|EFC45928.1| predicted protein [Naegleria gruberi]
Length = 985
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 15/209 (7%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
F ++ AK L LGVP L EA+AQC L+ +L D + DSD+FLFGA VYR+
Sbjct: 663 FFALVDLAKDLLTYLGVPYLVSPSEADAQCGFLSKHNLVDAVITEDSDLFLFGANCVYRN 722
Query: 118 IWLGER----GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
++ R + Y MD+I + LGF R +LI +ALLLGSDY+ GV +GP +A Q+V
Sbjct: 723 VFGSTRHIDKNIIEEYRMDNIFKVLGFTRTNLIQIALLLGSDYTDGVHNVGPVTATQVVD 782
Query: 174 SVGDNVVLQRIASEGLSFVKRAKNSKK---EGWSFKCNNKEESLNQ----EINVNGTDHS 226
+ N + + + L V + K E +F ++S + + N G+
Sbjct: 783 AF--NPEEKELDEDNLEEVTQGLKDFKLWVEDDTFNMGRTQKSWGKKGDFQFNYKGSKKK 840
Query: 227 --LQRETPFSQVIDAYSNPKCYSADSEAV 253
P S++IDAY+ P+ + S+ V
Sbjct: 841 FIFPEGFPDSKIIDAYTKPQVDDSLSDFV 869
>gi|118386483|ref|XP_001026360.1| XPG N-terminal domain containing protein [Tetrahymena thermophila]
gi|89308127|gb|EAS06115.1| XPG N-terminal domain containing protein [Tetrahymena thermophila
SB210]
Length = 1113
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 25/236 (10%)
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++ + L L GVP +E EAEAQCA L L DG + DSD+FLFG + +YR ++
Sbjct: 755 FQQVRQLLLLFGVPWVEAPSEAEAQCAFLEQIKLVDGIITDDSDVFLFGGKNIYRGLFGK 814
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
E YV + IE+++G R+ LI +AL LGSDY+ G++G+G +A +I + + L
Sbjct: 815 EADYVRYINGESIEKEMGVNRDKLIYMALFLGSDYTLGIKGVGIVNAMEICTAFENIDAL 874
Query: 182 QRI---ASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH-SLQRETPFSQVI 237
+R AS+ ++ +K + +E +E++ N H + E P +VI
Sbjct: 875 KRFKVWASKADVLLEDP------SIHYKNISLKEKNYKELHKNYKKHWEIPEEFPSQKVI 928
Query: 238 DAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 288
+AY NP +D FQ + L C F W E T+ + P
Sbjct: 929 NAYLNPNVDKSD----------EAFQWGKPSLGLLRAYCQNIFGWNDEITNYSLKP 974
>gi|45198651|ref|NP_985680.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|44984661|gb|AAS53504.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|374108910|gb|AEY97816.1| FAFR133Cp [Ashbya gossypii FDAG1]
Length = 970
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 17/237 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI++ + L G+P L EAEAQCA L L DG + DSD+FLFG V+++++
Sbjct: 709 MIRDIQQLLSIFGIPYLTAPMEAEAQCAELLRLKLIDGIITDDSDVFLFGGSKVFKNMF- 767
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y + I +LG R I LA L+GSDY+ G++G+GP S +I+ +
Sbjct: 768 QEKNYVEYYNTETISAELGLDRLKFIALAQLMGSDYTNGIKGIGPVSGIEILANYNTLEE 827
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ +EG + + S + S N + L + V G D P + V DAY
Sbjct: 828 FRTWYNEG-----QFRKSLLDKESLFQKNLRKKLTKSGVVLGDDF------PSAAVSDAY 876
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
NP+ D + V L + L WP EK DE ++P I E + RR
Sbjct: 877 LNPEV---DHDTTKFVWG--LPELDSLRTFLGSTLGWPTEKADEVLIPLIRELNKRR 928
>gi|410926473|ref|XP_003976703.1| PREDICTED: flap endonuclease GEN homolog 1-like [Takifugu rubripes]
Length = 827
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/432 (24%), Positives = 181/432 (41%), Gaps = 83/432 (19%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G P IK T +R K SS F ++KE +
Sbjct: 70 LVFVMEGEAPKIKAETMSKR------TLARYGGFKKTSSTTSTGRGRFKAVLKECADMLD 123
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV-CY 129
LGVP + EAEA CA L+ + L DGC ++D D FL+GA+ VYR+ + +V CY
Sbjct: 124 ILGVPWVTAAGEAEAMCAFLDSQGLVDGCITNDGDAFLYGAQIVYRNFHTNSKDPLVDCY 183
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN---------- 178
+ ++ +L R +L+ LA+LLG DY +G+ G+G E A ++++ + +
Sbjct: 184 KTSRVQTELHLSRENLVGLAVLLGCDYIPKGIPGVGKEQALKLLRMLKEQTLLQWFTQWE 243
Query: 179 --------VVLQRIAS---------------EGLSFVKRAKNSKKEGWSFKCNNKEESLN 215
VVL+++A G K + + + ++C
Sbjct: 244 EQNSGTPEVVLKKVAHCPVCHHPGSAKAHERGGCVLCKSNRFCHPQDFDYECPCDWHRYE 303
Query: 216 QEINVNGTDHSLQRET------PFSQVIDAY--SNPKCYSADSEAVHRVLAQHLFQHARL 267
+ V+ + +++++T PF+++I + S K S +L+ F H ++
Sbjct: 304 RTRQVSSFETNIRKKTMASPHFPFTKIISEFLISKDKPVSHFKRRQPNMLSMQKFAHEKM 363
Query: 268 HQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGII 327
+WP T E +L L +A L G D+ Q P++ I+
Sbjct: 364 --------EWPKHYTSEKVL------VLLTYAELMNKKY--GRDVSTQIKPLR-----IL 402
Query: 328 KSRKLQGKECFEVSWE--ESYGLKS-----------SVVPADLIESACPEKIVEFEERRA 374
KSR G CFE+ W E Y ++ A L A PE + ++ + ++
Sbjct: 403 KSRVRNGVPCFEIVWRTPEHYSFPDQQPAEDHHEVRTIEEATLFRVAFPEVVEKYLKDKS 462
Query: 375 LRQPKKSKPKSS 386
+ + KK++ K S
Sbjct: 463 MAEGKKTRSKKS 474
>gi|449283697|gb|EMC90302.1| Flap endonuclease GEN like protein 1, partial [Columba livia]
Length = 542
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G P +K T +R + K R S F M+KE L
Sbjct: 5 LVFVMEGEAPKLKADTMSKR-------NEMRYGPSKKVGAARTGRSLFKAMLKECLELLE 57
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCY 129
LGVP ++ EAEA CA LN + DGC ++D D+FL+GA TVYR+ + + Y+ CY
Sbjct: 58 CLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAHTVYRNFAMNAKDPYLDCY 117
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 184
M I+ LG R SLI LA+LLG DY +GV G+G E A +++ ++ +LQR
Sbjct: 118 TMSSIKETLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIDTLQGQNLLQRF 173
>gi|348574836|ref|XP_003473196.1| PREDICTED: flap endonuclease GEN homolog 1-like [Cavia porcellus]
Length = 906
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 176/406 (43%), Gaps = 57/406 (14%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + SLG+P ++ EAEA CA L+ DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLEMLESLGIPWVQAAGEAEAMCAHLDAGGQVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNPKDPHVDCYTASSIKNKLGLDRDALVALAVLLGCDYLPKGVPGVGREQALKLIQ 227
Query: 174 SVGDNVVLQRI---------ASEGLSFVKR------------AKNSKKEG-WSFKCNNKE 211
S+ +LQR +S K+ K+ ++ G W + +
Sbjct: 228 SLKGESLLQRFDQWNEISRHSSLQQQVAKKPAHCSVCAHPGSPKDHERHGCWLCRSDRYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H Q+E P +++ K S + H V+ + L +L V
Sbjct: 288 EPHDYEYRCPCEWH--QKEPPNG--VESSVMRKACSCEGFPFHEVIQEFLLNKDKLVGVI 343
Query: 272 AQ------FFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITG 325
FQ + E+ P E+ L ++ LG Q PV+
Sbjct: 344 RYQRPDLLLFQRFALEKMEWPNPYACEKLLVLLSHYDMIERKLGRRNSKQLQPVR----- 398
Query: 326 IIKSRKLQGKECFEVSWE-------ESYGLKSSVVPADLIESACPEKIVEFEERRALRQP 378
I+K R G CFE+ WE E L +V L E+A PE + + + + +
Sbjct: 399 IVKPRIRNGVHCFEIEWEMPEHFAVEHGELIVTVEVESLFEAAYPEIVAIYRKEKLETKG 458
Query: 379 KKSK-----------PKSSAAEIDQKLQALMLDIESENSTSSNASF 413
KK K PKS A Q L + L E + ++ SF
Sbjct: 459 KKPKNMKIKPNKGSFPKSHDAVTLQSLVTVKLTPEIFPAQNTGLSF 504
>gi|340923811|gb|EGS18714.1| putative DNA repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1238
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 118/261 (45%), Gaps = 41/261 (15%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 870 RRDADEVTQVMISECQTLLQLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 929
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + YV CY +IE +L R LI+LALLLGSDY++G+ G+GP +A +
Sbjct: 930 GTRVYKNVFNSNK-YVECYLASEIESELSLSREQLISLALLLGSDYTEGLPGVGPVTALE 988
Query: 171 IVKSV--GDNVVLQRIASEGLSFVKRAKNSKKEG---WSFKCNNKEESLNQEINVNGTDH 225
I+ GD L + A +R + + + W K + T
Sbjct: 989 ILSHFPPGDKQALIQFAEWWTDVQQRGRPASADASSPWRTKFR----------RAHATKL 1038
Query: 226 SLQRETPFSQVIDAYSNPKCYSA---------DSEAVHRVLAQHLFQHARLHQVCAQFFQ 276
L P V DAY +P+ S+ D E + R L +
Sbjct: 1039 FLPPGWPSPAVWDAYLSPEVDSSPEPFQWGVPDVEGLRRFLMGTV--------------G 1084
Query: 277 WPPEKTDEYILPKIAERDLRR 297
W EKTDE +LP + RD+ R
Sbjct: 1085 WGKEKTDEVLLPVV--RDMNR 1103
>gi|383854420|ref|XP_003702719.1| PREDICTED: flap endonuclease GEN-like [Megachile rotundata]
Length = 717
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 7/133 (5%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++KE K L +G+ C++G EAEA CA LN + L GC S DSD FL+GA+ VYR+
Sbjct: 112 ILKECKELLGYMGLACIQGQGEAEAMCAHLNEDGLVHGCISQDSDCFLYGAKVVYRNFCT 171
Query: 121 -------GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
G G V Y ++ IE+ L GRN +I LALL G DY +G+ G+G E+A ++ K
Sbjct: 172 SAQGNRGGTGGAVDEYSIEKIEKALDLGRNKMIALALLCGCDYDEGLNGVGKEAAMKLFK 231
Query: 174 SVGDNVVLQRIAS 186
V D +++R+ S
Sbjct: 232 IVKDEDIIERLKS 244
>gi|344305257|gb|EGW35489.1| hypothetical protein SPAPADRAFT_69718 [Spathaspora passalidarum
NRRL Y-27907]
Length = 980
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 78/128 (60%), Gaps = 1/128 (0%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 702 EKLQKAKRDSDEVTETMINDVQELLRRFGIPYITAPMEAEAQCAELLKIGLVDGIITDDS 761
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D LFG VY++++ ++ YV CY DDIE K+G R+ LI LALLLGSDY++G++G+G
Sbjct: 762 DCLLFGGDHVYKNMF-NQKQYVECYIKDDIEAKVGLSRDKLIELALLLGSDYTEGIKGIG 820
Query: 165 PESACQIV 172
P A +I+
Sbjct: 821 PVLAMEIL 828
>gi|385304582|gb|EIF48594.1| single-stranded dna cleaves single-stranded dna during nucleotide
excision repair [Dekkera bruxellensis AWRI1499]
Length = 577
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 12/187 (6%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ MI + + L G+P + EAEAQCA L L DG + DSD FLFG +Y+++
Sbjct: 364 TSMILDVQDLLSRFGIPFITAPMEAEAQCAELFGLKLVDGIVTDDSDCFLFGGSIIYKNM 423
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
+ E+ +V CY+++DI R +G R +I LAL+LGSDY+ G++G+G +A +I+ GD
Sbjct: 424 F-NEKNFVECYQLEDIARDMGLTRKQMIDLALMLGSDYTSGLKGVGKVTAVEILSEFGDL 482
Query: 179 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 238
V + E + G K N+ + + D L R+ P VIB
Sbjct: 483 VTFRNWWLE-----------YQGGKIDKSNDNKXRRKIRKQMXKADLFLGRDFPDPAVIB 531
Query: 239 AYSNPKC 245
AY +P+
Sbjct: 532 AYLHPEV 538
>gi|443897481|dbj|GAC74821.1| 5'-3' exonuclease [Pseudozyma antarctica T-34]
Length = 1544
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 124/261 (47%), Gaps = 23/261 (8%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
+ + M E M++ G+P + EAEAQCA L L DG + DSD+FLF
Sbjct: 1052 ITKQMAQEIQMMLR-------LFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLF 1104
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G +Y++++ R V C+ + D++R+LG R L+ LA LGSDY++G+ G+GP A
Sbjct: 1105 GGTRIYKNMFNNNR-IVECFLLSDMQRELGLDREKLVRLAYYLGSDYTEGLAGVGPVVAM 1163
Query: 170 QIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 228
+++ G++ +L+ E V+ ++ + +++L +++ L+
Sbjct: 1164 ELLALFPGEDGLLK--FREWWMRVQTGADTHEHTRGKTMRRIKKNLRNKVH-------LE 1214
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
P V+DAY P +D A L L ++ WP KTD+Y+LP
Sbjct: 1215 PSWPEPAVLDAYYAPTVDESDEP-----FAWGLPDLDSLRTFLGEYLHWPVSKTDQYLLP 1269
Query: 289 KIAERDLRRFANLRANTLALG 309
I ++ R A TL G
Sbjct: 1270 IIERQNARTRARGNQTTLDRG 1290
>gi|448121834|ref|XP_004204307.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358349846|emb|CCE73125.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1063
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 17/253 (6%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
++M +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 784 EQMLKAKRDSDEPTQNMISDVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDS 843
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG VY++++ ++ YV CY DIE LG +++LI LALLLGSDY++GV+G+G
Sbjct: 844 DCFLFGGDKVYKNMF-NQKKYVECYSQKDIESHLGLSQDNLIELALLLGSDYTRGVKGIG 902
Query: 165 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 224
P A +I+ G L++ + V R K K K + +++L + NG+
Sbjct: 903 PVLAVEILAEFGS---LEKFKEWFDANVHRTKPPDKS----KMTSLQKNLLNRVK-NGSL 954
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 284
+ L P V DAY P+ S + + + + ++ V W + DE
Sbjct: 955 Y-LSETFPDMVVFDAYKRPEVDSDTTSFKWGIPNLNDIRSYLIYNVG-----WTQSRVDE 1008
Query: 285 YILPKIAERDLRR 297
++P I RD+ R
Sbjct: 1009 VMVPLI--RDINR 1019
>gi|299749580|ref|XP_001836208.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
gi|298408502|gb|EAU85580.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
Length = 1200
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 16/240 (6%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + G+P + EAEAQCA L L DG + DSD+FLFGA V+++++
Sbjct: 796 MISQIMTMLRLFGIPYITAPMEAEAQCAELTSLGLVDGVITDDSDVFLFGASRVFKNMF- 854
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V C+ + D+ER+LG R++LI LA LLGSDY++G+ G+GP A ++V+
Sbjct: 855 NQSKTVECFLLSDLERELGLDRDTLIQLAYLLGSDYTEGLAGVGPVVAMELVREFPGKDG 914
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L + E + V+ K+ + F+ K+ D + ++ P + V DAY
Sbjct: 915 LWKF-KEWWTKVQTGKDGDESNTKFRKMFKKRF---------KDLYIAQDWPNTAVRDAY 964
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 300
+P S+D L L WP K DE +LP I + + R N
Sbjct: 965 YHPTVDSSDEP-----FKWGLPDLDGLRAFFNSELGWPQSKVDELLLPIIQKMNKRSQTN 1019
>gi|448124207|ref|XP_004204862.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358249495|emb|CCE72561.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1067
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 1/132 (0%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
++M +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 788 EQMLKAKRDSDEPTQNMISDVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDS 847
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG VY++++ ++ YV CY DIE LG +++LI LALLLGSDY++GV+G+G
Sbjct: 848 DCFLFGGDKVYKNMF-NQKKYVECYSQKDIESHLGLSQDNLIELALLLGSDYTRGVKGIG 906
Query: 165 PESACQIVKSVG 176
P A +I+ G
Sbjct: 907 PVLAVEILAEFG 918
>gi|340500548|gb|EGR27416.1| hypothetical protein IMG5_195980 [Ichthyophthirius multifiliis]
Length = 989
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
++ K L + G+P +E EAEAQCA L + L DG + DSD+FLFG R VYR+++
Sbjct: 665 QQIKQLLILFGIPWVESPSEAEAQCAFLEMHQLVDGIVTDDSDVFLFGGRKVYRNLFSQN 724
Query: 123 RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQ 182
YV +++IE+ LG R LI +AL LGSDY+ G++G+G ++ +IV + + L+
Sbjct: 725 SQYVRYINIENIEKDLGLDRQRLILMALFLGSDYTLGIKGVGIVNSFEIVTAFDNMDALK 784
Query: 183 R 183
R
Sbjct: 785 R 785
>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
Length = 1280
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 118/260 (45%), Gaps = 25/260 (9%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL GVP + EAEAQCA L +L DG + DSD FLFG
Sbjct: 895 RRDADEVTQVMVTECQALLRLFGVPYITAPMEAEAQCAELVRLNLVDGIVTDDSDTFLFG 954
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY + D+E +L R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 955 GTRVYKNMFNSNK-FVECYLLRDLEDELELSREQLIALAQLLGSDYTEGIPGIGPVTAVE 1013
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQR 229
I+ EGLS K + G K + ++ T L
Sbjct: 1014 ILSEF--------PGREGLSDFKTWWEDVQSGKRPKEADASSPFRRKFRKGQATKLFLPL 1065
Query: 230 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDE 284
P V DAY +P+ S +Q FQ L Q W E+TDE
Sbjct: 1066 GFPSPAVFDAYLHPEVDS----------SQEQFQWGVPDLEGLRQFLMSTIGWSKERTDE 1115
Query: 285 YILPKIAERDLRRFANLRAN 304
++P I + + R +AN
Sbjct: 1116 VLVPVIRDVNRREAEGTQAN 1135
>gi|432945552|ref|XP_004083655.1| PREDICTED: flap endonuclease GEN homolog 1-like [Oryzias latipes]
Length = 783
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 164/380 (43%), Gaps = 79/380 (20%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G+ P +K T +R + ++ +S R F+ ++KE +
Sbjct: 70 LVFVMEGTAPKLKAETMSKRTKARYGQFKNPTKCSTNTSRGR-----FNSILKECAEMLD 124
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCY 129
LGVP + EAEA CA L+ + L DGC ++D D FL+GARTVYR+ + + + CY
Sbjct: 125 YLGVPWVMAAGEAEAMCAYLDSQGLVDGCITNDGDAFLYGARTVYRNFNMSSKDPQIDCY 184
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI---- 184
+ ++ +L R +L+ LA+LLG DY +G+ G+G E A ++++++ + +LQR
Sbjct: 185 QTSRVQTELNLSRENLVGLAILLGCDYIPKGIPGVGKEQALRLIQALKGDSLLQRFIQWR 244
Query: 185 -----------------------------ASEGLSFVKRAKNSKKEGWSFKCNNKEESLN 215
+G + + + + ++C S
Sbjct: 245 EENPTVSGVVVKKVPHCNICRHPGSATAHGRQGCRLCNSQQYCQPQDFDYQCPCDWHSHE 304
Query: 216 QEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQ 269
Q V + +++++T PF+++I+ + S D H F+ + +
Sbjct: 305 QTHQVVSFEANIKKKTLCSPQFPFTEIINEF----LVSKDKPVSH-------FKRRQPNM 353
Query: 270 VCAQFF-----QWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVKCP 322
+ Q F +WP T E +L + +L R++ G + Q P++
Sbjct: 354 MMMQKFAYEKMEWPKHYTSEKVLVLLTYTELMNRKY----------GTGVSSQIKPIR-- 401
Query: 323 ITGIIKSRKLQGKECFEVSW 342
I+KSR CFEV W
Sbjct: 402 ---IVKSRVRNAVACFEVIW 418
>gi|449498163|ref|XP_002196947.2| PREDICTED: flap endonuclease GEN homolog 1 [Taeniopygia guttata]
Length = 617
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G P +K T +R + K + R S F M+KE +
Sbjct: 70 LVFVMEGEAPRLKADTMSKR-------NEMRYGPSKKAGAVRTGRSLFKAMLKECLEMLE 122
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCY 129
LGVP ++ EAEA CA LN + L DGC ++D D+FL+GA+TVYR+ + + ++ Y
Sbjct: 123 CLGVPWVQAAGEAEAMCAYLNAKGLVDGCLTNDGDVFLYGAQTVYRNFAMNAKDPHLDSY 182
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 184
M I+ KLG R SLI LA+LLG DY +GV G+G E A ++++++ +LQR
Sbjct: 183 TMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIETLQGENLLQRF 238
>gi|367016309|ref|XP_003682653.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
gi|359750316|emb|CCE93442.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
Length = 1012
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 117/237 (49%), Gaps = 17/237 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI E + L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 752 MIVEVQDLLSRFGIPFITAPMEAEAQCAELLGLKLVDGIITDDSDVFLFGGSRVYKNMF- 810
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ I++ LG R+++I LA LLGSDY+ G++G+GP S+ +++ G+ +
Sbjct: 811 HEKNYVEFYDYQSIKQNLGLDRDTMIELAQLLGSDYTNGIKGMGPVSSMEVLAEFGNLIK 870
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ +EG K+ + N E L + + N L + P V D+Y
Sbjct: 871 FRDWYNEGQFDTKKQQAE---------NKYERDLRKRLVKNEV--VLSSDFPSELVRDSY 919
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+P+ S + + L Q W EK+DE ++P I + + R+
Sbjct: 920 LSPEVDHDKSTFIWGAPDLDM-----LRQFMRARVGWTQEKSDEILVPLIRDINNRK 971
>gi|146417652|ref|XP_001484794.1| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MI++ + L G+P + EAEAQCA L L DG + DSD FLFG + VY++++
Sbjct: 774 TMIRDVQELLKRFGIPYITAPMEAEAQCAELMKLGLVDGIITDDSDCFLFGGQKVYKNMF 833
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
++ YV CY +D+I K+G + +LI LALLLGSDY++G++G+GP A +I+
Sbjct: 834 -NQKQYVECYFIDEISHKVGLDQKNLIELALLLGSDYTEGIKGIGPVMAVEIL 885
>gi|426199083|gb|EKV49008.1| hypothetical protein AGABI2DRAFT_217997 [Agaricus bisporus var.
bisporus H97]
Length = 1160
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 23/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + G+P + EAEAQCA L L DG + DSD+FLFGA+ VY++++
Sbjct: 785 MISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNMF- 843
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V + + D+ER+LG R++L+ LA LLGSDY+ G+ G+GP A +++K +
Sbjct: 844 NQSKTVELFLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKEFPNKEG 903
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLN----QEINVNGTDHSLQRETPFSQV 236
L R A + +R + K +KEE N ++ D L + P V
Sbjct: 904 LHRFA----DWWRRVQEGK---------DKEEESNTKTRRQFKKKFKDLYLPSDWPNPAV 950
Query: 237 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 296
DAY +P S++ L L Q W K DE +LP I + + R
Sbjct: 951 RDAYYHPAVDSSEEP-----FKWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRR 1005
Query: 297 R 297
R
Sbjct: 1006 R 1006
>gi|77736641|ref|NP_001029995.1| XPG-complementing protein [Gallus gallus]
gi|71725078|dbj|BAE16755.1| XPG [Gallus gallus]
Length = 1118
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 27/251 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 722 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKN-FF 780
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
YV Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 781 SRNKYVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 831
Query: 181 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
L GL +K A E W+ E N++I N D ++++ Q+
Sbjct: 832 LNEFPGHGLEPLLKFA-----EWWN------EAQKNKKIRPNPRDTKVKKKLRELQLSSG 880
Query: 240 YSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDL 295
+ NP A V ++ + Q+ C F W KTDE +LP I + +L
Sbjct: 881 FPNPAVAEAYLKPVVDETRGSFIWGKPDVEQIREFCKDHFGWTRTKTDEILLPVIKQLNL 940
Query: 296 RRFANLRANTL 306
++ LR ++
Sbjct: 941 QQ-TQLRIDSF 950
>gi|190346361|gb|EDK38425.2| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MI++ + L G+P + EAEAQCA L L DG + DSD FLFG + VY++++
Sbjct: 774 TMIRDVQELLKRFGIPYITAPMEAEAQCAELMKLGLVDGIITDDSDCFLFGGQKVYKNMF 833
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
++ YV CY +D+I K+G + +LI LALLLGSDY++G++G+GP A +I+
Sbjct: 834 -NQKQYVECYFIDEISHKVGLDQKNLIELALLLGSDYTEGIKGIGPVMAVEIL 885
>gi|297600506|ref|NP_001049313.2| Os03g0205400 [Oryza sativa Japonica Group]
gi|255674294|dbj|BAF11227.2| Os03g0205400 [Oryza sativa Japonica Group]
Length = 1470
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 854 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 913
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
+ +R YV Y M DIE +LG R LI +A+LLGSDY++G+ G+G +A ++ + +
Sbjct: 914 F-DDRKYVETYLMKDIESELGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVAHAFPEE 972
Query: 179 VVLQRI 184
LQ+
Sbjct: 973 DGLQKF 978
>gi|354547816|emb|CCE44551.1| hypothetical protein CPAR2_403540 [Candida parapsilosis]
Length = 994
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 716 EKLHKAKRDSDEVTENMIGDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIITDDS 775
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG +Y++++ ++ +V CY +DIE K+G R +LI LA+LLGSDY++G++G+G
Sbjct: 776 DCFLFGGDRIYKNMF-SQKQFVECYLKNDIEDKIGLSRENLIELAILLGSDYTEGIKGIG 834
Query: 165 PESACQIVKSVG 176
P A +I+ G
Sbjct: 835 PVLAVEILAEFG 846
>gi|443703547|gb|ELU01026.1| hypothetical protein CAPTEDRAFT_17841 [Capitella teleta]
Length = 464
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 31/304 (10%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFS-CMIK 63
L+Y + +G +PA+K T ++ + ++ L + + M + + M
Sbjct: 66 LYYRIKPVFVFDGGVPALKKQTTDELIDLQKVLEVENTELHNTRNQQDRMATSLTEQMNI 125
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EA+ L G+P + EAEAQCA L+L S +G + DSDI+LFG R VY++++ +R
Sbjct: 126 EAQELVRLFGLPYVVSPMEAEAQCAFLDLTSQTNGTVTDDSDIWLFGGRNVYKNLFNSKR 185
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+V + +D E++L R L+ +AL+ GSDY+ G+ GP +A +I +
Sbjct: 186 -HVEWFRFEDFEKQLFLTREKLVNMALVCGSDYTPGIHNAGPVAAMEI---------MGE 235
Query: 184 IASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNP 243
+ GL ++ K W + K + ++ + + P V+DAY NP
Sbjct: 236 FPAPGLRSLQLFKQ-----WWDEAQTKVKVQETKVKIKLRKLVINEGFPSEAVVDAYMNP 290
Query: 244 KCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 298
+ + F R L Q F W EK DE +LP + + + ++
Sbjct: 291 TVDESRED----------FSWGRPDLDLLRQYAKNRFGWNKEKIDESLLPVMKQINAKQD 340
Query: 299 ANLR 302
+ LR
Sbjct: 341 SQLR 344
>gi|409077739|gb|EKM78104.1| hypothetical protein AGABI1DRAFT_61094 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1128
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 23/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + G+P + EAEAQCA L L DG + DSD+FLFGA+ VY++++
Sbjct: 753 MISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNMF- 811
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V + + D+ER+LG R++L+ LA LLGSDY+ G+ G+GP A +++K +
Sbjct: 812 NQSKTVELFLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKEFPNKEG 871
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLN----QEINVNGTDHSLQRETPFSQV 236
L R A + +R + K +KEE N ++ D L + P V
Sbjct: 872 LHRFA----DWWRRVQEGK---------DKEEESNTKTRRQFKKKFKDLYLPSDWPNPAV 918
Query: 237 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 296
DAY +P S++ L L Q W K DE +LP I + + R
Sbjct: 919 RDAYYHPAVDSSEEP-----FKWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRR 973
Query: 297 R 297
R
Sbjct: 974 R 974
>gi|298711922|emb|CBJ48609.1| DNA repair enzyme [Ectocarpus siliculosus]
Length = 1835
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 35/251 (13%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP + EAEAQC +L L DG + DSD F FG R VY++I+ +R +V Y +
Sbjct: 1315 FGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFS-DRKFVEAYLL 1373
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
D E+ LG G + ++ LALLLGSDY++GVRG+G +A +++ + + + A GLS
Sbjct: 1374 PDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAF---PLEGKGAHHGLSK 1430
Query: 192 VKR-------AKNSKKEGWSFKCNNKE-ESLNQEINVNGTDHSLQRET-------PFSQV 236
K+ + + EG + + + KE + L+ E+ + H R P +V
Sbjct: 1431 FKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFH-LKHRTARNRWTVPDGFPSEEV 1489
Query: 237 IDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDEYILPKIA 291
I+AY+NP+ V R ++ F A L +C + W +++D ++P +
Sbjct: 1490 INAYNNPQ--------VDR--SEEPFSWAAPDVDGLMALCQRVLGWDRDQSDGLLMPMVK 1539
Query: 292 ERDLRRFANLR 302
E D FA R
Sbjct: 1540 ELDRGSFAQSR 1550
>gi|343424970|emb|CBQ68507.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Sporisorium reilianum SRZ2]
Length = 1495
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 23/258 (8%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
+ + M E M++ G+P + EAEAQCA L L DG + DSD+FLF
Sbjct: 1003 ITKQMAQEIQMMLR-------LFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLF 1055
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ +Y++++ + V C+ + D++R+LG R L+ LA LGSDY+ G+ G+GP A
Sbjct: 1056 GSTRIYKNMFNNNK-IVECFLLSDMQRELGLDREKLVRLAYYLGSDYTDGLAGVGPVVAM 1114
Query: 170 QIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 228
+++ G++ +L+ E V+ +++++ +++L +++ L+
Sbjct: 1115 ELLALFPGEDGLLK--FREWWLRVQMGQDTEEHTRGKTMRRIKKNLRNKVH-------LE 1165
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
P V+DAY P +D A L L ++ WP KTD+Y+LP
Sbjct: 1166 PSWPEPAVLDAYYAPTVDESDEP-----FAWGLPDLDSLRTFLGEYLHWPVTKTDQYLLP 1220
Query: 289 KIAERDLRRFANLRANTL 306
I ++ R A TL
Sbjct: 1221 IIERQNARNRARGNQTTL 1238
>gi|356577903|ref|XP_003557061.1| PREDICTED: uncharacterized protein LOC100796403, partial [Glycine
max]
Length = 215
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 91/131 (69%), Gaps = 12/131 (9%)
Query: 317 VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRAL- 375
+PVKCP++ IIKSR++QG+EC+EVSWE GL++S+VPADLIESAC EKI+EFEER+A
Sbjct: 3 IPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLETSIVPADLIESACREKILEFEERKAQR 62
Query: 376 -------RQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSS-RVVMSEDWTAAT 427
R+PKK + SS AE+D KLQ L+LDI + + NAS SS R+ TA
Sbjct: 63 KKQNIQKRKPKKKETNSSVAELDLKLQNLLLDINLRDEANFNASDSSGRISRITTDTAEA 122
Query: 428 EIDLTRRQDLL 438
+++ T DLL
Sbjct: 123 DLNTT---DLL 130
>gi|432096863|gb|ELK27441.1| Flap endonuclease GEN like protein 1 [Myotis davidii]
Length = 903
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 161/378 (42%), Gaps = 85/378 (22%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E L LG+P ++ EAEA C+ L+ DGC ++D D FL+GARTVY
Sbjct: 108 SHFKSVLRECLELLECLGIPWVQAAGEAEAMCSYLDASGYVDGCLTNDGDAFLYGARTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRIA------------------------------------SEGLSFVKRAKN 197
+ +LQR G + +
Sbjct: 228 ILKGQSLLQRFIQWSEEKPCNSNQQPLVIKKLAHCSVCSHPGSPKDHEHNGCKLCQTDRY 287
Query: 198 SKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSE 251
+ + + C+ + Q+ + +++++++ PF +VI + K +
Sbjct: 288 CEPHDYEYCCSCEWHRTEQDRQLMTIENNIKKKACSCEGFPFHEVIQEFLLNK-----DK 342
Query: 252 AVHRVLAQH----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 305
V V Q LFQ L ++ WP E +L + D+ R+ +N
Sbjct: 343 LVKAVRYQRPDLLLFQRFTLEKM-----DWPNHYACEKLLVLLTHYDMIERKLGRRHSNQ 397
Query: 306 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPA 355
L P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 398 LQ----------PIR-----IVKNRIRNGVHCFEIEWEKPEHYAIEDNHGELVLQTIEEE 442
Query: 356 DLIESACPEKIVEFEERR 373
L E+A PE + + +++
Sbjct: 443 SLFEAAFPEIVAVYHKQQ 460
>gi|71019629|ref|XP_760045.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
gi|46099838|gb|EAK85071.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
Length = 1532
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 121/257 (47%), Gaps = 21/257 (8%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
+ + M E M++ G+P + EAEAQCA L L DG + DSD+FLF
Sbjct: 1030 ITKQMAQEIQMMLR-------LFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLF 1082
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G VY++++ + V C+ + D++R+LG R L+ LA LGSDY++G+ G+GP A
Sbjct: 1083 GGTRVYKNMFNNNK-IVECFLLSDMQRELGLDREKLVQLAYYLGSDYTEGLVGVGPVVAM 1141
Query: 170 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
+++ L + + V+ +++++ + +L+ +++ L+
Sbjct: 1142 ELLALFPGQDGLLKFRDWWMR-VQMGQDTEEHTRGKTMRRIKRNLHNKVH-------LEP 1193
Query: 230 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 289
P V+DAY P +D A L L ++ WP KTD+Y+LP
Sbjct: 1194 SWPEHAVLDAYFAPTVDESDEP-----FAWGLPDLDSLRTFLGEYLHWPVTKTDQYLLPI 1248
Query: 290 IAERDLRRFANLRANTL 306
I ++ R A TL
Sbjct: 1249 IERQNTRNRARGNQTTL 1265
>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1129
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 851 EKLQKAKRDSDEVTETMIYDVQELLKRFGIPFITAPMEAEAQCAELLKIGLVDGIVTDDS 910
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG VY++++ ++ +V CY DDI K+G +++LI LALLLGSDY++G++G+G
Sbjct: 911 DCFLFGGDKVYKNMF-NQKQFVECYFKDDIATKIGLSQDNLIELALLLGSDYTEGIKGVG 969
Query: 165 PESACQIVKSVG 176
P A +I+ G
Sbjct: 970 PVLAMEILAEFG 981
>gi|380474820|emb|CCF45572.1| DNA-repair protein rad13 [Colletotrichum higginsianum]
Length = 622
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 119/261 (45%), Gaps = 27/261 (10%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQCA L SL DG + DSD FLFG
Sbjct: 274 RRDADEVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVRMSLVDGIVTDDSDCFLFG 333
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++L R LI +A LLGSDY++G+ G+GP +A +
Sbjct: 334 GTRIYKNMFNSNK-FVECYLGSDLEKELSLSREQLIAIAQLLGSDYTEGLPGVGPVTAVE 392
Query: 171 IVKSVGDNVVLQRIAS--EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 228
I+ L+R + + R K + G F+ ++ T L
Sbjct: 393 ILSEFTGKDGLERFKEWWQDVQMNNRPKEADA-GSPFRRKFRKS--------QATKLFLP 443
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTD 283
P V DAY P+ DS H FQ L Q W E+TD
Sbjct: 444 TGFPNPAVTDAYLRPEV---DSSPEH-------FQWGVPDLEGLRQFLMATIGWSKERTD 493
Query: 284 EYILPKIAERDLRRFANLRAN 304
E ++P I + + R +AN
Sbjct: 494 EVLVPVIRDMNKRDIEGTQAN 514
>gi|449019441|dbj|BAM82843.1| probable excision repair protein ERCC5 [Cyanidioschyzon merolae
strain 10D]
Length = 1117
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 129/285 (45%), Gaps = 45/285 (15%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M + K L LG+P +E EAEAQCA L+ + D + DSD FLFGA VYR I+
Sbjct: 767 MFADTKRLLQLLGIPYIEAAMEAEAQCAFLDRAGIVDAVVTEDSDAFLFGASRVYRHIFE 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS------ 174
+ YV YEM+ IER +G R+ LI L LLLGSDYS GV G+G +A +IV++
Sbjct: 827 DSK-YVEEYEMNRIERNMGLSRDKLICLGLLLGSDYSDGVYGVGIVNATEIVEAFCRDPD 885
Query: 175 -VGDNVVLQRIASEGLSFVKRAKNSKKEG---------WSFKCNNKEESLNQEINVNGTD 224
+ +R GL + ++ G + K+ +N + N N D
Sbjct: 886 PACPDTSPEREPFRGLQDFREWLDAVHLGDDPASVSDPEPRRAAFKKLHINMKRNWNLLD 945
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH-----ARLHQVCAQFFQWPP 279
+ P VI+A+ P+ D+ +HR + LF + L C F W
Sbjct: 946 KTF----PNRHVIEAFLRPQV---DTSWLHR--RRELFPNCGPDPVALRAFCHDLFGWDS 996
Query: 280 EKTDEYILPKIA------ERDLR--------RFANLRANTLALGV 310
K ++ + P + ER R RFA +R+ L V
Sbjct: 997 AKLEQALGPVVQAFQRHRERQTRIDSFFQPHRFARIRSTRLQNAV 1041
>gi|145352686|ref|XP_001420669.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580904|gb|ABO98962.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 271
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 122/261 (46%), Gaps = 42/261 (16%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M ++ + L G+P + +EAEAQCA LN L D + DSD+FLFGA VYR+
Sbjct: 1 MYRDVQELLTLFGIPYIIAPQEAEAQCAYLNQHKLVDAVITDDSDVFLFGASHVYRNF-F 59
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ Y Y D I+R+LG R+ I LALLLGSDY++GV G+G +A +IV NV+
Sbjct: 60 SEKKYCEVYTADRIKRELGLDRDRFIQLALLLGSDYTEGVGGVGIVNALEIVSVFKGNVM 119
Query: 181 ------LQRIASEGLSFVKR----------AKNSKKEGWSFKCNNKEESLNQEINVNGTD 224
+ I E L+ V A+++ + + K SL + V
Sbjct: 120 DASKAFREWIDMEELTMVPERLLPSPSKTSAESATDDAITAAFKEKHRSLKKSWEVPANY 179
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPP 279
SL +V+ AY P S D ++ F+ + L C + W
Sbjct: 180 PSL-------EVVKAYQYP---SVDQ-------SEETFEWGKPDLDMLRLFCIKTLSWTR 222
Query: 280 EKTDEYILPKI---AERDLRR 297
+ D+ +LP + ++RD +R
Sbjct: 223 DAADQILLPMMKSWSKRDDQR 243
>gi|384493818|gb|EIE84309.1| hypothetical protein RO3G_09019 [Rhizopus delemar RA 99-880]
Length = 816
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 6/140 (4%)
Query: 36 EVTQDDKNLDKMSSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 92
E+ QD K L+ + R++ G+ MI + + L G+P + EAEAQCA L
Sbjct: 631 ELYQDMKELN--AQQRKDKGNSDDITDQMIGDIQELLKLFGIPYIVSPMEAEAQCAALER 688
Query: 93 ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLL 152
L +G + DSD+FLFGA VY++++ +R +V CY +DIER++ RN LI LA LL
Sbjct: 689 LKLIEGTITDDSDVFLFGASRVYKNMFNQQR-FVECYRTEDIEREMMLSRNKLIQLAYLL 747
Query: 153 GSDYSQGVRGLGPESACQIV 172
GSDY++G+ G+GP +A +I+
Sbjct: 748 GSDYTEGIPGVGPVAAMEIL 767
>gi|85116383|ref|XP_965045.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
gi|28926846|gb|EAA35809.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
Length = 1269
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 115/254 (45%), Gaps = 9/254 (3%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 870 RRDADEVTQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 929
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ G + +V CY DIER L R+ LI LA LLGSDY++G+ G+GP +A +
Sbjct: 930 GTRVYKNMFNGNK-FVECYLSSDIERDLSLSRDQLIALAQLLGSDYTEGLSGVGPVTAVE 988
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ + + + ++S + S + T L
Sbjct: 989 ILSEFPPEPTPISSLTTFKEWWTKIQSSPQPDPSLLSTPFRRKFRK---AQATKLFLPVG 1045
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P V DAY +P+ ++ + L Q Q W E+TDE ++P I
Sbjct: 1046 FPNPAVFDAYLHPEV-----DSTPEPFQWGVPDLEGLRQFLMQTIGWSQERTDEVLVPVI 1100
Query: 291 AERDLRRFANLRAN 304
+ + R ++N
Sbjct: 1101 RDMNKREREGTQSN 1114
>gi|440901361|gb|ELR52322.1| DNA repair protein complementing XP-G cells [Bos grunniens mutus]
Length = 1202
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 25/250 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 785 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 843
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 844 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 894
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL +++ E W E N++I N D ++++ Q+ +
Sbjct: 895 LNEFPGHGLEPLRKF----SEWW------HEAQENKKIRPNPYDTKVKKKLRKLQLTPGF 944
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + ++
Sbjct: 945 PNPAVADAYLKPVVDESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLNVH 1004
Query: 297 RFANLRANTL 306
+ LR ++
Sbjct: 1005 Q-TQLRIDSF 1013
>gi|344284659|ref|XP_003414082.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Loxodonta africana]
Length = 1636
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1221 MFLESQELLRLFGVPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1279
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1280 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1330
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N++I N D ++++ Q++ +
Sbjct: 1331 LNEFPGHGLEPLLKF----SEWW------HEAQDNKKIRPNPYDTKVKKKLRKLQLMPGF 1380
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQH---ARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ ++ + C ++F W KTDE + P + + +++
Sbjct: 1381 PNPAVAEAYLKPVVDDSRGSFLWGKPDLGKIREFCQRYFGWNRTKTDESLFPVLKQLNVQ 1440
Query: 297 R 297
+
Sbjct: 1441 Q 1441
>gi|78369362|ref|NP_001030353.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Bos taurus]
gi|77567831|gb|AAI07529.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Bos taurus]
gi|296481618|tpg|DAA23733.1| TPA: XPG-complementing protein [Bos taurus]
Length = 1201
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 784 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 842
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 843 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 893
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL +++ E W E N++I N D ++++ Q+ +
Sbjct: 894 LNEFPGHGLEPLRKF----SEWW------HEAQENKKIRPNPYDTKVKKKLRKLQLTPGF 943
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 944 PNPAVADAYLKPVVDESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 995
>gi|453088882|gb|EMF16922.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 1387
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 122/270 (45%), Gaps = 41/270 (15%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI+E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 1026 RRDADEVTQTMIQECQALLRLFGLPYVTAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFG 1085
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++ G R LI +A LLGSDY++GV G+GP +A +
Sbjct: 1086 GTRIYKNMF-NQAKFVECYLTSDLEKEFGLTRQKLIAVANLLGSDYTEGVPGVGPVTALE 1144
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF-------KCNNKEESLNQEINVNGT 223
I+ D L+ KE W+ K + S ++ N +
Sbjct: 1145 IISEFPD---LEEF---------------KEWWTAVQMNERPKSEDAGNSFRKKFRRNAS 1186
Query: 224 DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWP 278
L P +V AY P+ ADS+A FQ +L W
Sbjct: 1187 KLFLPHGFPDKRVEMAYLEPEV-DADSQA---------FQWGVPDLDKLRSFLMATIGWT 1236
Query: 279 PEKTDEYILPKIAERDLRRFANLRANTLAL 308
E+TDE ++P I + + R +AN A
Sbjct: 1237 QERTDEVLVPVIKDMNRRLDEGTQANITAF 1266
>gi|170036109|ref|XP_001845908.1| DNA-repair protein complementing XP-G cells [Culex quinquefasciatus]
gi|167878599|gb|EDS41982.1| DNA-repair protein complementing XP-G cells [Culex quinquefasciatus]
Length = 1217
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP + EAEAQCA LN L DG + DSDI+LFG +TVY++ + ++ V+ + +
Sbjct: 847 FGVPFIVAPMEAEAQCAFLNQIELTDGTITDDSDIWLFGGKTVYKN-FFNQQKLVMEFTI 905
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
+ IER R LI LALL+GSDY+ G+ G+G +A +++ S +E +S
Sbjct: 906 EGIERAFQMDRKKLIQLALLVGSDYTTGISGIGAVTALEVLASFPPTPQKDGETTEMMSL 965
Query: 192 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ--RETPFSQVIDAYSNPKCYSAD 249
+ + ++ W+ NN S+ I + +++ P S +++AY P
Sbjct: 966 LSGLRKF-RDWWNHGRNN---SVRTRITLKSKLKNIEFTEGFPSSAIVEAYLYPTV---- 1017
Query: 250 SEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+ + L Q F WP KTD+ +LP + D R+
Sbjct: 1018 -DGNKDAFSWGYPDAESLRDFAKQKFGWPQAKTDDILLPVLKRLDERK 1064
>gi|395509172|ref|XP_003758878.1| PREDICTED: uncharacterized protein LOC100916082 [Sarcophilus
harrisii]
Length = 978
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE L LGVP ++ EAEA CA L+ DGC + D D FL+GA+TVY
Sbjct: 107 SSFKAVLKECLDLLECLGVPWVQASGEAEAMCAYLDAHGYVDGCLTDDGDAFLYGAQTVY 166
Query: 116 RDIWLGER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+R LG R++LI LA+LLG DY +GV G+G E A ++V+
Sbjct: 167 RNFTMNAKDPHVDCYTMSSIKRDLGLDRDTLIGLAVLLGCDYLPKGVPGVGKELALKLVR 226
Query: 174 SVGDNVVLQRI 184
S+ +LQ+
Sbjct: 227 SLKGQNLLQKF 237
>gi|426236893|ref|XP_004012399.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing XP-G
cells [Ovis aries]
Length = 1200
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 25/250 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 776 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 834
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 835 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 885
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL +++ E W E N++I N D ++++ Q+ +
Sbjct: 886 LNEFPGHGLEPLQKF----SEWW------HEAQENKKIRPNPYDTKVKKKLRKLQLTPGF 935
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + ++
Sbjct: 936 PNPAVADAYLKPVVDESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLNVH 995
Query: 297 RFANLRANTL 306
+ LR ++
Sbjct: 996 Q-TQLRIDSF 1004
>gi|74196654|dbj|BAE34428.1| unnamed protein product [Mus musculus]
Length = 739
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 182/439 (41%), Gaps = 94/439 (21%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G P +K +R TQ S ++ S F +++E +
Sbjct: 5 LVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKSVLRECLEMLE 57
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCY 129
LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ + + +V CY
Sbjct: 58 CLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCY 117
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIAS-- 186
+ I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +LQR
Sbjct: 118 TISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQSLLQRFNQWI 177
Query: 187 --------------------------------EGLSFVKRAKNSKKEGWSFKCNNKEESL 214
G K K + + + C +
Sbjct: 178 EDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYDYLCPCEWHQT 237
Query: 215 NQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARL- 267
+ +++ +++++++ PF +VI + K +++L +Q L
Sbjct: 238 DHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLKPITYQRPDLL 288
Query: 268 --HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVKCPI 323
+ Q +WP E +L + D+ R+ +N L P++
Sbjct: 289 LFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ----------PIR--- 335
Query: 324 TGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEFE-- 370
I+K R G C E+ WE E Y ++ ++ A L E+A P+ + ++
Sbjct: 336 --IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVYQKQ 393
Query: 371 --ERRALRQPK-KSKPKSS 386
E + +Q K+KPK S
Sbjct: 394 LSETKGRKQKSMKNKPKGS 412
>gi|255070381|ref|XP_002507272.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
gi|226522547|gb|ACO68530.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
Length = 1108
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 123/265 (46%), Gaps = 41/265 (15%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M + + L GVP + +EAEAQCA +N E L D + DSD FLFGA TVYR+++
Sbjct: 800 MYHQIQDLLTLFGVPYVIAPQEAEAQCAWMNSEGLVDAVITEDSDAFLFGASTVYRNVF- 858
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI--VKSVGDN 178
+ YV Y +++I+R +G R + LALLLGSDY++G+ G+G +A +I V S D
Sbjct: 859 NTKKYVEVYSVENIQRDIGLKRAQMAELALLLGSDYTEGIPGVGIVNALEIASVFSGMDG 918
Query: 179 VVLQRIASE----------------GLSFVKR---AKNSK--------------KEGWSF 205
+ R E G S K+ AK+ + KEG
Sbjct: 919 LTTFRNWVENGDLPDQVNRGNRCLAGSSLPKKHVVAKDGEGGHLVSDKEKNIDLKEGEVA 978
Query: 206 KCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA 265
+ E Q+ T L + P VI+AY+ P DS VH + F+
Sbjct: 979 NIYLQREIFKQKHQAARTRWILPNDFPSVAVIEAYAKPL---VDSSKVHLEWGKPNFELL 1035
Query: 266 RLHQVCAQFFQWPPEKTDEYILPKI 290
R+ C + F W KTDE + P I
Sbjct: 1036 RV--FCLESFNWGIGKTDELLEPVI 1058
>gi|26326927|dbj|BAC27207.1| unnamed protein product [Mus musculus]
Length = 908
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 186/448 (41%), Gaps = 95/448 (21%)
Query: 3 SYL-HYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM 61
SYL + L+ + G P +K +R TQ S ++ S F +
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 122 ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 179
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 180 VLQRIAS----------------------------------EGLSFVKRAKNSKKEGWSF 205
+LQR G K K + + +
Sbjct: 234 LLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYDY 293
Query: 206 KCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
C + + +++ +++++++ PF +VI + K +++L
Sbjct: 294 LCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLKP 344
Query: 260 HLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPL 314
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 345 ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------- 397
Query: 315 QKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACP 363
P++ I+K R G C E+ WE E Y ++ ++ A L E+A P
Sbjct: 398 ---PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYP 449
Query: 364 EKIVEFE----ERRALRQPK-KSKPKSS 386
+ + ++ E + +Q K+KPK S
Sbjct: 450 DAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>gi|326913904|ref|XP_003203272.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Meleagris gallopavo]
Length = 1121
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 27/251 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 722 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKN-FF 780
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ YV Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 781 SQNKYVEYYQYVDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 831
Query: 181 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
L GL +K A E W+ E N++I N D ++++ Q+
Sbjct: 832 LNEFPGHGLEPLLKFA-----EWWN------EAQKNKKIRPNPRDTRVKKKLRELQLSSG 880
Query: 240 YSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDL 295
+ NP A V + + Q+ C F W KTD+ +LP I + +L
Sbjct: 881 FPNPAVAEAYLKPVVDETRGSFTWGKPDVEQIREFCKDHFGWTRTKTDDILLPVIKQLNL 940
Query: 296 RRFANLRANTL 306
++ LR ++
Sbjct: 941 QQ-TQLRIDSF 950
>gi|406864117|gb|EKD17163.1| DNA excision repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1423
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 130/286 (45%), Gaps = 28/286 (9%)
Query: 14 SLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLG 73
+LN A ++Y R L + + D RR+ + MI E +AL G
Sbjct: 963 TLNNRTDAENQASYERELKALRNQQKKD---------RRDADEVTTVMISECQALLRLFG 1013
Query: 74 VPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
+P + EAEAQCA L+NL L DG + D DIFLFG VY++++ + YV CY
Sbjct: 1014 LPYITAPMEAEAQCAELVNL-GLVDGVVTDDCDIFLFGGTRVYKNMFNSNK-YVECYLAS 1071
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFV 192
DIE++L R+ LI +A LLGSDY++G+ G+GP +A +I+ + +GL
Sbjct: 1072 DIEKELSLSRDQLIAIAHLLGSDYTEGLPGVGPVTAIEILSEF--------PSKDGLEEF 1123
Query: 193 KRAKNSKKEGWSFKCNNKEESLNQEI-NVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE 251
K S + + N + + ++ T L P V +AY P+ +
Sbjct: 1124 KEWFTSIQRPHAPPLNTESSTFRKKFRRQQATKLFLPTGFPSKAVTEAYWKPEV-----D 1178
Query: 252 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+ +L W E+TDE ++P I RD+ R
Sbjct: 1179 KTPEAFQWGVPDLEKLRDFLMATIGWSQERTDEVLVPVI--RDMNR 1222
>gi|336463192|gb|EGO51432.1| hypothetical protein NEUTE1DRAFT_70166 [Neurospora tetrasperma FGSC
2508]
gi|350297610|gb|EGZ78587.1| PIN domain-like protein [Neurospora tetrasperma FGSC 2509]
Length = 1269
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 113/247 (45%), Gaps = 11/247 (4%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 873 RRDADEVTQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 932
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ G + +V CY DIER L R+ LI LA LLGSDY++G+ G+GP +A +
Sbjct: 933 GTRVYKNMFNGNK-FVECYLSSDIERDLSLSRDQLIALAQLLGSDYTEGLSGVGPVTAVE 991
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ + + + ++S + + + T L
Sbjct: 992 ILSEFPPEPTPISSLTTFKEWWTKIQSSPQPDPALLSTPFRRKFRK---AQATKLFLPVG 1048
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P V DAY +P+ ++ + L Q Q W E+TDE ++P I
Sbjct: 1049 FPNPAVFDAYLHPEV-----DSTPEPFQWGVPDLEGLRQYLMQTIGWSQERTDEVLVPVI 1103
Query: 291 AERDLRR 297
RDL +
Sbjct: 1104 --RDLNK 1108
>gi|148666016|gb|EDK98432.1| RIKEN cDNA 5830483C08 [Mus musculus]
Length = 908
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 186/448 (41%), Gaps = 95/448 (21%)
Query: 3 SYL-HYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM 61
SYL + L+ + G P +K +R TQ S ++ S F +
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 122 ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 179
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 180 VLQRIAS----------------------------------EGLSFVKRAKNSKKEGWSF 205
+LQR G K K + + +
Sbjct: 234 LLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYDY 293
Query: 206 KCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
C + + +++ +++++++ PF +VI + K +++L
Sbjct: 294 LCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLKP 344
Query: 260 HLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPL 314
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 345 ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------- 397
Query: 315 QKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACP 363
P++ I+K R G C E+ WE E Y ++ ++ A L E+A P
Sbjct: 398 ---PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGELSLLTMEEASLFEAAYP 449
Query: 364 EKIVEFE----ERRALRQPK-KSKPKSS 386
+ + ++ E + +Q K+KPK S
Sbjct: 450 DAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>gi|345324376|ref|XP_001513433.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Ornithorhynchus anatinus]
Length = 1520
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 25/250 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 1107 MFLESQELLRLFGIPFIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKN-FF 1165
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ ++ Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1166 NKNKFIEYYQYGDFYNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1216
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + E W+ E N++I N D ++++ Q+ +
Sbjct: 1217 LNEFPGHGLEPLLHF----SEWWN------EAQKNKKIRPNPHDTKVKKKLRQLQLAPGF 1266
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ ++ Q C ++F W KTDE +LP + + ++
Sbjct: 1267 PNPAVAEAYLRPVVDESRGAFLWGKPDAEKIRQFCQRYFGWNKTKTDESLLPVLKQLNIH 1326
Query: 297 RFANLRANTL 306
+ LR ++
Sbjct: 1327 Q-TQLRIDSF 1335
>gi|26326997|dbj|BAC27242.1| unnamed protein product [Mus musculus]
Length = 908
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 186/448 (41%), Gaps = 95/448 (21%)
Query: 3 SYL-HYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM 61
SYL + L+ + G P +K +R TQ S ++ S F +
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 122 ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 179
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 180 VLQRIAS----------------------------------EGLSFVKRAKNSKKEGWSF 205
+LQR G K K + + +
Sbjct: 234 LLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYDY 293
Query: 206 KCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
C + + +++ +++++++ PF +VI + K +++L
Sbjct: 294 LCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLKP 344
Query: 260 HLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPL 314
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 345 ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------- 397
Query: 315 QKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACP 363
P++ I+K R G C E+ WE E Y ++ ++ A L E+A P
Sbjct: 398 ---PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYP 449
Query: 364 EKIVEFE----ERRALRQPK-KSKPKSS 386
+ + ++ E + +Q K+KPK S
Sbjct: 450 DAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>gi|148540148|ref|NP_796305.3| flap endonuclease GEN homolog 1 [Mus musculus]
gi|166221585|sp|Q8BMI4.2|GEN_MOUSE RecName: Full=Flap endonuclease GEN homolog 1
gi|60334795|gb|AAH90653.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957028|gb|AAI38159.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957572|gb|AAI38158.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
Length = 908
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 186/448 (41%), Gaps = 95/448 (21%)
Query: 3 SYL-HYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM 61
SYL + L+ + G P +K +R TQ S ++ S F +
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 122 ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 179
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 180 VLQRIAS----------------------------------EGLSFVKRAKNSKKEGWSF 205
+LQR G K K + + +
Sbjct: 234 LLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYDY 293
Query: 206 KCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
C + + +++ +++++++ PF +VI + K +++L
Sbjct: 294 LCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLKP 344
Query: 260 HLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPL 314
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 345 ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------- 397
Query: 315 QKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACP 363
P++ I+K R G C E+ WE E Y ++ ++ A L E+A P
Sbjct: 398 ---PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYP 449
Query: 364 EKIVEFE----ERRALRQPK-KSKPKSS 386
+ + ++ E + +Q K+KPK S
Sbjct: 450 DAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>gi|338715323|ref|XP_001494708.3| PREDICTED: DNA repair protein complementing XP-G cells [Equus
caballus]
Length = 1190
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 25/250 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 773 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 831
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 832 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 882
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W+ E N++I N D ++++ Q+ +
Sbjct: 883 LNEFPGHGLEPLLKF----SEWWN------EAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 932
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + +++
Sbjct: 933 PNPAVADAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDETLFPVLKQLNVQ 992
Query: 297 RFANLRANTL 306
+ LR ++
Sbjct: 993 Q-TQLRIDSF 1001
>gi|440633177|gb|ELR03096.1| hypothetical protein GMDG_05935 [Geomyces destructans 20631-21]
Length = 1232
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 133/301 (44%), Gaps = 42/301 (13%)
Query: 14 SLNGSIPAIKLSTYRRRLNS-GSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 72
SLN P + Y R L ++ +D ++ D++S + M+ E +AL
Sbjct: 844 SLNNKAPQVNQEDYERELKQLRNQQKKDRRDADEVSHI----------MVTECQALLRLF 893
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EAEAQCA L L DG + DSD+FLFG VY++++ + +V CY
Sbjct: 894 GLPYITAPMEAEAQCAELVTLGLVDGIITDDSDVFLFGGTRVYKNMFNSNK-FVECYLAS 952
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFV 192
D+E++L R+ LI A LLGSDY++G+ G+GP +A +I+ +S+GL
Sbjct: 953 DLEKELSLPRDKLIEFAHLLGSDYTEGLPGIGPVTALEIISEF--------PSSDGLQEF 1004
Query: 193 KRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYS----- 247
K W + + NQ + S +R+ SQ + P S
Sbjct: 1005 K--------DWWYDVQH-----NQRPKEADSTSSFRRKFRKSQASKLFLPPAFPSKAVTE 1051
Query: 248 ----ADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRA 303
AD ++ + L W PE TDE ++P I + + R +A
Sbjct: 1052 AYLHADVDSTPDPFQWGVPDLDNLRSFLMATIGWTPECTDEVLVPVIQDMNRREAEGTQA 1111
Query: 304 N 304
N
Sbjct: 1112 N 1112
>gi|60811379|gb|AAX36171.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
Length = 1187
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|324715041|ref|NP_001191354.1| BIVM-ERCC5 protein [Homo sapiens]
Length = 1640
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 1222 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 1280
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1281 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1331
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1332 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1381
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1382 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1441
Query: 297 R 297
+
Sbjct: 1442 Q 1442
>gi|51988900|ref|NP_000114.2| DNA repair protein complementing XP-G cells [Homo sapiens]
gi|21619256|gb|AAH31522.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Homo sapiens]
gi|24079971|gb|AAN46091.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Homo sapiens]
gi|61364768|gb|AAX42600.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
gi|123981830|gb|ABM82744.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [synthetic
construct]
gi|123996661|gb|ABM85932.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [synthetic
construct]
Length = 1186
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|298111|emb|CAA49598.1| XP-G factor [Homo sapiens]
gi|119629476|gb|EAX09071.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)), isoform
CRA_a [Homo sapiens]
Length = 1186
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|33187721|gb|AAP97715.1|AF462447_1 excision repair protein ERCC5 [Homo sapiens]
gi|306742|gb|AAC37533.1| excision repair protein [Homo sapiens]
Length = 1186
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|410215558|gb|JAA04998.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410261564|gb|JAA18748.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410301776|gb|JAA29488.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410335601|gb|JAA36747.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
Length = 1186
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|62088204|dbj|BAD92549.1| DNA-repair protein complementing XP-G cells variant [Homo sapiens]
Length = 1611
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 1193 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 1251
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1252 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1302
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1303 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1352
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1353 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1412
Query: 297 R 297
+
Sbjct: 1413 Q 1413
>gi|205371791|sp|P28715.3|ERCC5_HUMAN RecName: Full=DNA repair protein complementing XP-G cells; AltName:
Full=DNA excision repair protein ERCC-5; AltName:
Full=Xeroderma pigmentosum group G-complementing protein
gi|9587154|gb|AAF89179.1| xeroderma pigmentosum complementation group G protein splice
variant [Homo sapiens]
Length = 1186
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|426375915|ref|XP_004054761.1| PREDICTED: DNA repair protein complementing XP-G cells [Gorilla
gorilla gorilla]
Length = 1186
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|332841607|ref|XP_003314253.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Pan troglodytes]
Length = 1186
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|390457518|ref|XP_002742570.2| PREDICTED: DNA repair protein complementing XP-G cells [Callithrix
jacchus]
Length = 1638
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 30/235 (12%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1222 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1280
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1281 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1331
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1332 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTAGF 1381
Query: 241 SNPKCYSA-------DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
NP A DS+A + L ++ + C ++F W KTDE + P
Sbjct: 1382 PNPAVAEAYLKPVVDDSQASYLWGKPDL---DKIREFCQRYFGWNRTKTDESLFP 1433
>gi|194378226|dbj|BAG57863.1| unnamed protein product [Homo sapiens]
Length = 1018
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 600 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 658
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 659 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 709
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 710 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 759
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 760 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 819
Query: 297 R 297
+
Sbjct: 820 Q 820
>gi|397524400|ref|XP_003832181.1| PREDICTED: DNA repair protein complementing XP-G cells [Pan paniscus]
Length = 1754
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 1336 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 1394
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1395 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1445
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1446 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1495
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1496 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1555
Query: 297 R 297
+
Sbjct: 1556 Q 1556
>gi|403347306|gb|EJY73073.1| hypothetical protein OXYTRI_05797 [Oxytricha trifallax]
Length = 1055
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L G+P ++ EAE+QCA L + L DG + DSD+ LFGAR VYR+I+
Sbjct: 756 QELKTLLRLCGIPFVQAPFEAESQCAFLEINGLVDGVVTEDSDVLLFGARKVYRNIF-DR 814
Query: 123 RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GD 177
+ Y+M IER++G R+ LI +AL +GSDY+ GVRG+ +A +I+ S GD
Sbjct: 815 NKFAEKYDMKIIEREMGLDRDDLIKMALFMGSDYTMGVRGIAAVNAIEIINSFQGD 870
>gi|213404960|ref|XP_002173252.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
gi|212001299|gb|EEB06959.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
Length = 1199
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 8/133 (6%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M++E + L G+P + +EAEAQCA L L DG + DSD+FLFG +YR+++
Sbjct: 826 MVRECQELLRYFGLPYIVAPQEAEAQCAKLLELKLVDGVVTDDSDVFLFGGTRIYRNMF- 884
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDNV 179
+ +V Y D+ER GR LI LA LLGSDY++G+ +GP SA +I++ GDN
Sbjct: 885 NQSKFVELYLSSDMERDFAIGRKQLIQLAYLLGSDYTEGLSSVGPVSAVEILREFPGDNP 944
Query: 180 VLQ------RIAS 186
+++ RIAS
Sbjct: 945 LIEFKRWFLRIAS 957
>gi|354481807|ref|XP_003503092.1| PREDICTED: flap endonuclease GEN homolog 1 [Cricetulus griseus]
Length = 876
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 159/378 (42%), Gaps = 78/378 (20%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+ VY
Sbjct: 108 SHFKSVLRECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQMVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLR 227
Query: 174 SVGDNVVLQRIAS----------------------------------EGLSFVKRAKNSK 199
+ +LQR G +F K + +
Sbjct: 228 ILKGQSLLQRFNQWIEEPCSSIPQPAAKNVAHCSVCSHPGSPKDHERNGCTFCKSDRYCE 287
Query: 200 KEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAV 253
+ + C + +N +++++++ PF +VI + K
Sbjct: 288 PHDYEYLCPCEWHQTKHNRQLNEIENNIKKKACSCKGFPFHEVIQEFLLNK--------- 338
Query: 254 HRVLAQHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGV 310
++L +Q L + Q +WP E +L + D+ R N+ L
Sbjct: 339 DKMLKPIRYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMTERKLGRKNSGQLQ- 397
Query: 311 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIE 359
P++ I++ R C E+ WE E Y ++ +V A L E
Sbjct: 398 -------PIR-----IVRPRIRNRVRCLEIEWEKPEHYAMEDTEAGELDLLTVEEASLFE 445
Query: 360 SACPEKIVEFEERRALRQ 377
+A PE + ++++++ Q
Sbjct: 446 AAYPEVVAIYQKQQSETQ 463
>gi|380810474|gb|AFE77112.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
gi|383416485|gb|AFH31456.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
Length = 1182
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWWH------EAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|348583617|ref|XP_003477569.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells-like [Cavia porcellus]
Length = 1169
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 23/233 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 750 MFLESQELLRLFGVPYIQAPMEAEAQCAILDLTDQTSGTITEDSDIWLFGARHVYKN-FF 808
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDNV 179
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+ G +
Sbjct: 809 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCITAMEILNEFPGHGM 868
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
L IAS +E W +E N +I N D ++++ Q+
Sbjct: 869 NLCLIASR-----------YREWW------QEAQKNPKIRPNPHDTKVKKKLRKLQLTPG 911
Query: 240 YSNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
+ NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 912 FPNPAVADAYLRPVVDDSKGSFLWGRPDVDKIREFCQRYFGWSRTKTDESLFP 964
>gi|355686469|gb|AER98068.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mustela putorius furo]
Length = 1003
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 587 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 645
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 646 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 696
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 697 LNEFPGPGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 746
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 747 PNPAVADAYLKPVVDESRGAFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 798
>gi|9930001|dbj|BAB12157.1| hypothetical protein [Macaca fascicularis]
Length = 415
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 24/238 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 59
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 60 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 110
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 111 LNEFPGHGLEPLLKF----SEWWH------EAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 160
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERD 294
NP A V L+ L ++ C ++F W KTDE + P + + D
Sbjct: 161 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQLD 218
>gi|297274789|ref|XP_002800868.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 2
[Macaca mulatta]
Length = 1040
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 25/250 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 626 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 684
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 685 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 735
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 736 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 785
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 786 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 845
Query: 297 RFANLRANTL 306
+ LR ++
Sbjct: 846 Q-TQLRIDSF 854
>gi|297274787|ref|XP_001096257.2| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Macaca mulatta]
Length = 1182
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWWH------EAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>gi|351699459|gb|EHB02378.1| Flap endonuclease GEN-like protein 1 [Heterocephalus glaber]
Length = 910
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 163/379 (43%), Gaps = 81/379 (21%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
+R S F +++E + LGVP ++ EAEA CA LN DGC + D D FL+G
Sbjct: 103 QRTGRSRFKLVLRECLEMLECLGVPWVQAAGEAEAMCAHLNGTGRADGCLTDDGDAFLYG 162
Query: 111 ARTVYRDIWL-GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESA 168
A+TVYR+ + + +V CY M I+ KLG R++L+ LA+LLG DY + + G+G E A
Sbjct: 163 AQTVYRNFTMNAQDPHVDCYTMSSIKNKLGLDRDALVGLAILLGCDYLPKAIPGVGKEQA 222
Query: 169 CQIVKSVGDNVVLQRI---------------ASE-------------------GLSFVKR 194
+++ + +LQR A+E G K
Sbjct: 223 LTLIQILKGESLLQRFNQWNEKSCHSVPQPEAAELAHCSVCSHPGSLKDHERNGCQLCKS 282
Query: 195 AKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSA 248
++ + + + C + + + G +++++++ PF +VI +
Sbjct: 283 SRYCEPHDYEYCCPCEWHQTKHDRQLIGVENNIKKKACSCEGFPFHEVIQE------FLL 336
Query: 249 DSEAVHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRA 303
+ + + RV+ LFQ L ++ +WP + +L + D+ R
Sbjct: 337 NKDKLVRVIRYQRPDLLLFQRFTLEKM-----EWPNHYACKKLLVLLTRYDMMERKLGRK 391
Query: 304 NTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS--------SVV 353
N+ L P++ I+K R G CFE+ WE E + ++ +V
Sbjct: 392 NSDQLQ--------PIR-----IVKPRIRNGVHCFEIEWEMPEHFAVEDGEHGELILTVE 438
Query: 354 PADLIESACPEKIVEFEER 372
L E+A PE + ++ +
Sbjct: 439 EESLFEAAYPEIVAIYQNQ 457
>gi|281350378|gb|EFB25962.1| hypothetical protein PANDA_002828 [Ailuropoda melanoleuca]
Length = 1192
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 776 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 834
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 835 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 885
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 886 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 935
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 936 PNPAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 987
>gi|359322522|ref|XP_003639860.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Canis
lupus familiaris]
Length = 1185
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 769 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 827
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 828 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 878
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 879 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 928
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 929 PNPAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 980
>gi|357620639|gb|EHJ72769.1| hypothetical protein KGM_08405 [Danaus plexippus]
Length = 1103
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 46 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 105
K+ + RN+ + M KEA+ L G+P + EAEAQCA+L L DG + DSD
Sbjct: 697 KLDRIGRNITEQ---MTKEAQELLQIFGIPYIVAPMEAEAQCAVLEALKLTDGTITDDSD 753
Query: 106 IFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 165
I+LFG RTVY++ + ++ +V+ + + IE+ R L+ LALL+GSDY+ GV G+GP
Sbjct: 754 IWLFGGRTVYKN-FFNQKKHVLQFLRERIEKSFNLSREKLVLLALLVGSDYTVGVTGVGP 812
Query: 166 ESACQIVKS 174
+A +I+ S
Sbjct: 813 VTALEILAS 821
>gi|356561651|ref|XP_003549093.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 94
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%)
Query: 242 NPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANL 301
NPKC+ ADS+ VH+ LAQ+ FQ +L Q+C FF+WP EKTD YILP IAER+LRRFANL
Sbjct: 2 NPKCHQADSDIVHKGLAQYPFQRTKLQQICVGFFEWPSEKTDGYILPSIAERNLRRFANL 61
Query: 302 RANTLALGVDLPLQKV 317
R + +G++LPL ++
Sbjct: 62 RLTSSEVGMNLPLHEL 77
>gi|301758086|ref|XP_002914899.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Ailuropoda melanoleuca]
Length = 1644
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1228 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1286
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1287 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1337
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 1338 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 1387
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 1388 PNPAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 1439
>gi|389642679|ref|XP_003718972.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|351641525|gb|EHA49388.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|440472732|gb|ELQ41574.1| DNA-repair protein rad13 [Magnaporthe oryzae Y34]
gi|440485125|gb|ELQ65111.1| DNA-repair protein rad13 [Magnaporthe oryzae P131]
Length = 1269
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 118/247 (47%), Gaps = 16/247 (6%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 903 RRDADEVSQVMVTECQQLLRLFGIPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 962
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ G + +V CY D+E++L + +LI+LA LLGSDY+ G+ G+GP +A +
Sbjct: 963 GTRVYKNMFNGNK-FVECYLASDLEKELSLSQENLISLAQLLGSDYTDGLPGVGPVTAVE 1021
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ L R A + V+ + N +GWS +S T L
Sbjct: 1022 ILSEFPGPDGLSRFA-DWWRQVQSSLNVSTDGWSSFLRKFRKS-------QATRLFLPPG 1073
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P V +AY P+ S D E A L + L W E+TDE ++P I
Sbjct: 1074 FPSPAVPEAYLKPEVDS-DPEPFQ-WGAPDL---SGLRDFLMATIGWSQERTDEVLVPVI 1128
Query: 291 AERDLRR 297
RD+ R
Sbjct: 1129 --RDINR 1133
>gi|402902426|ref|XP_003914105.1| PREDICTED: DNA repair protein complementing XP-G cells [Papio anubis]
Length = 1814
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1400 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1458
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1459 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1509
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1510 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1559
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1560 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1619
Query: 297 R 297
+
Sbjct: 1620 Q 1620
>gi|332242072|ref|XP_003270208.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Nomascus leucogenys]
Length = 1189
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 24/238 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWWH------EAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERD 294
NP A V L+ L ++ C ++F W KTDE + P + + D
Sbjct: 928 PNPAIAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLD 985
>gi|148226745|ref|NP_001081629.1| DNA repair protein complementing XP-G cells homolog [Xenopus laevis]
gi|50416246|gb|AAH77363.1| XPGC protein [Xenopus laevis]
Length = 1197
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 26/233 (11%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P + EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 802 MCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 860
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ DI +LG R+ LI LA LLGSDY++G+ +G SA +I
Sbjct: 861 SQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEI--------- 911
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L +GL + + KE WS E ++++ N D ++++ ++ ++
Sbjct: 912 LNEFPGQGLEPLVKF----KEWWS------EAQKDKKMRPNPNDTKVKKKLRLLELQQSF 961
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 288
NP SA + V ++ F R + + C F W KTDE +LP
Sbjct: 962 PNPAVASAYLKPVVDE-SKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLP 1013
>gi|198434339|ref|XP_002124511.1| PREDICTED: similar to Flap endonuclease GEN homolog 1 [Ciona
intestinalis]
Length = 579
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 3 SYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMI 62
++ + L+ +G P +K T R++ EV Q N+ S R N C +
Sbjct: 62 TFTRNGTRLIFVTDGKAPELKWKTMAHRMDVRQEV-QKGTNVSHGSRSRLNARFNECCQL 120
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+ LG+P ++ EAEA CA LN + DGC ++DSD FL+GA++VYR++ +
Sbjct: 121 LD------QLGIPWIKSEGEAEATCAALNSVGVVDGCMTNDSDTFLYGAKSVYRNLSMTT 174
Query: 123 RGY---VVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
V CYE+ DIE KL R SLI L LLLG DYS QGV G+G + A ++ S
Sbjct: 175 DRNDIDVECYELCDIESKLQLNRKSLIALGLLLGCDYSPQGVPGVGKKQAIMLLSS 230
>gi|302927330|ref|XP_003054474.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
gi|256735415|gb|EEU48761.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
Length = 1192
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 857 RRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFG 916
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 917 GTRVYKNMFNSNK-FVECYLGGDLEKELSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 975
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ L+ F K + + + + + GT L
Sbjct: 976 ILSEFPGKSGLE-------DFRDWWKEVQSQSRPKEADASSPFRKKFRRSQGTKLFLPPG 1028
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDEY 285
P V DAY NP+ ++ FQ L Q W E+TDE
Sbjct: 1029 FPSPAVFDAYLNPEVDDSNES----------FQWGVPDVEGLRQFLMATIGWSKERTDEV 1078
Query: 286 ILPKIAERDLRRFANLRAN 304
++P I + + R ++N
Sbjct: 1079 LVPVIKDMNKRDREGTQSN 1097
>gi|408388533|gb|EKJ68217.1| hypothetical protein FPSE_11684 [Fusarium pseudograminearum CS3096]
Length = 1224
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 109
RR+ MI E +AL G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 888 RRDADEVTQVMITECQALLRLFGIPYVTAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 946
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G VY++++ + +V CY + DIE++L R LI+LA LLGSDY++G+ G+GP +A
Sbjct: 947 GGTRVYKNMFNSNK-FVECYLVSDIEKELSLTREQLISLAHLLGSDYTEGLPGVGPVTAV 1005
Query: 170 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINV--------- 220
+I+ F R+ + W ++ + +++
Sbjct: 1006 EILS----------------EFPGRSGLNNFREWWKSVQSQTRPKDADVSTPFRKKFRKS 1049
Query: 221 NGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFF 275
GT L P V DAY +P+ ++ + FQ L Q
Sbjct: 1050 QGTKLFLPPSFPSPAVNDAYLHPEVDDSNED----------FQWGVPDVEGLRQFLMATI 1099
Query: 276 QWPPEKTDEYILPKIAERDLRRFANLRAN 304
W E+TDE ++P I + + R ++N
Sbjct: 1100 GWSKERTDEVLVPVIKDMNKRDREGTQSN 1128
>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 990
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 713 EKFQKAKRDSDEVTEAMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDS 772
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGSDY++G++G+G
Sbjct: 773 DCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIG 831
Query: 165 PESACQIVKSVGD 177
P A +I+ G+
Sbjct: 832 PVQAMEILAEFGN 844
>gi|342878276|gb|EGU79631.1| hypothetical protein FOXB_09914 [Fusarium oxysporum Fo5176]
Length = 1260
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 897 RRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 956
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY + DIE++L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 957 GTRVYKNMFNSNK-FVECYLVGDIEKELSLSREQLISLAHLLGSDYTEGLPGVGPVTAVE 1015
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ L+ E V+ K S K GT L
Sbjct: 1016 ILSEFPGKSGLENF-REWWRSVQSQTRPKDADVSTPFRKKFRK------SQGTKLFLPPG 1068
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDEY 285
P V DAY +P+ ++ FQ L Q W E+TDE
Sbjct: 1069 FPNPAVYDAYLHPEVDDSNEN----------FQWGVPDVEGLRQFLMATIGWSKERTDEV 1118
Query: 286 ILPKIAERDLRRFANLRAN 304
++P I + + R ++N
Sbjct: 1119 LVPVIKDMNKRDREGTQSN 1137
>gi|254573770|ref|XP_002493994.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
during nucleotide excision repair [Komagataella pastoris
GS115]
gi|238033793|emb|CAY71815.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
during nucleotide excision repair [Komagataella pastoris
GS115]
gi|328354189|emb|CCA40586.1| DNA repair protein complementing XP-G cells [Komagataella pastoris
CBS 7435]
Length = 1043
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + + G+P + EAEAQCA L L DG + DSD FLFG +Y++++
Sbjct: 767 MIDDIQDMLTRFGIPYITAPMEAEAQCAELLKLKLVDGIITDDSDCFLFGGERIYKNMF- 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
E+ YV CY +++I+R LG RN +I +ALL+GSDY++G++G+G +A +I+
Sbjct: 826 NEKQYVECYFLEEIQRDLGLTRNKMIEIALLVGSDYTEGIKGIGIVTAMEIL 877
>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
Length = 990
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 18/169 (10%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 713 EKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDS 772
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGSDY++G++G+G
Sbjct: 773 DCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIG 831
Query: 165 PESACQIV-----------------KSVGDNVVLQRIASEGLSFVKRAK 196
P A +I+ KSV D L ++ L +K+ K
Sbjct: 832 PVQAMEILAEFGNLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGK 880
>gi|452847295|gb|EME49227.1| hypothetical protein DOTSEDRAFT_68105 [Dothistroma septosporum NZE10]
Length = 1395
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 118/265 (44%), Gaps = 31/265 (11%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI+E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 1013 RRDADEVTQIMIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFG 1072
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++ R+ LI +A LLGSDY+ G+ G+GP +A +
Sbjct: 1073 GTRIYKNMF-NQAKFVECYLTSDLEKEFDLTRDKLIAVAHLLGSDYTDGIPGIGPVTALE 1131
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF-------KCNNKEESLNQEINVNGT 223
I+ G L++ KE W+ K + + ++ N T
Sbjct: 1132 IISEFGS---LEKF---------------KEWWTAVQMNQIPKEADAKIPFRKKFRKNAT 1173
Query: 224 DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTD 283
L P ++V AY P D + + A L W E+TD
Sbjct: 1174 KLFLPPAFPDARVELAYQQP-----DVDPTQEAFQWGVPDLAALRSFLMATIGWNEERTD 1228
Query: 284 EYILPKIAERDLRRFANLRANTLAL 308
E ++P I + + R +AN A
Sbjct: 1229 EVLVPVIKDMNRRTDEGTQANITAF 1253
>gi|344228751|gb|EGV60637.1| hypothetical protein CANTEDRAFT_132346 [Candida tenuis ATCC 10573]
Length = 960
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 31 LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL 90
LN + +T++ +++ +R+ MI + + L G+P L EAEAQC L
Sbjct: 667 LNITTSITEEQLLQERLLKQKRDSEEVTQAMINDVQELLRRFGIPFLTAPMEAEAQCVEL 726
Query: 91 NLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLAL 150
L DG + DSD FLFG VY++++ ++ +V CY +D+ KLG + LI L L
Sbjct: 727 LKLGLVDGIVTDDSDTFLFGGDRVYKNMF-NQKQFVECYLSEDVSGKLGLSQEKLIELGL 785
Query: 151 LLGSDYSQGVRGLGPESACQIVKSVG 176
LLGSDY++GV+G+GP A +I+ G
Sbjct: 786 LLGSDYTEGVKGIGPVLAMEILAEFG 811
>gi|320167228|gb|EFW44127.1| DNA-repair protein rad13 [Capsaspora owczarzaki ATCC 30864]
Length = 1235
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 52 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 111
R++ S S MI + + L G+P L EAEAQCA L+L + DG + DSD+FLFGA
Sbjct: 880 RDVASVDSEMIADTQELLRLFGMPYLTAPMEAEAQCAALDLAGITDGTITEDSDVFLFGA 939
Query: 112 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
R VYR+ + Y Y IE L R LI LALLLGSDY+ GV +GP A +I
Sbjct: 940 RRVYRN-FFNPNKYAEFYASSAIESYLALDREKLIDLALLLGSDYTSGVERIGPVLAMEI 998
Query: 172 VKSVGDNVVLQRIAS 186
+GD LQ A+
Sbjct: 999 ---LGDFPSLQEFAT 1010
>gi|297694381|ref|XP_002824460.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing XP-G
cells [Pongo abelii]
Length = 1899
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1481 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1539
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1540 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1590
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1591 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPYDTKVKKKLRTLQLTPGF 1640
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1641 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1700
Query: 297 R 297
+
Sbjct: 1701 Q 1701
>gi|270011949|gb|EFA08397.1| hypothetical protein TcasGA2_TC006044 [Tribolium castaneum]
Length = 591
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ +K + + LG+ C+ G EAEA CA LN L DG S DSD F +GAR VY
Sbjct: 108 SRFNHTLKRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFAYGARVVY 167
Query: 116 RDIWLGERGY-------VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
R+ + ++G V Y++ +L FGRN +I LALL GSDYS GV G+G +S
Sbjct: 168 RNFSISQQGNQAAKGGSVDVYDISVANERLNFGRNKIIALALLCGSDYSDGVHGIGKDSV 227
Query: 169 CQIVKSVGDNVVLQRIAS 186
+ V D+ +LQR+ S
Sbjct: 228 VKFFNLVKDDEILQRLRS 245
>gi|451852103|gb|EMD65398.1| hypothetical protein COCSADRAFT_114116, partial [Cochliobolus sativus
ND90Pr]
Length = 1213
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 20/256 (7%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 109
RR+ MI E + L G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 932 RRDADEVTQTMISECQQLLALFGLPYITAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 990
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G VY++++ + +V CY D+ + R LI +A LLGSDY++G+ G+GP +A
Sbjct: 991 GGTRVYKNMFNAAK-FVECYLSSDLTSEFSLTRQKLIDIAQLLGSDYTEGIPGIGPVTAL 1049
Query: 170 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQ 228
+I+ D L+ ++ + + G K ++ + S + N T L
Sbjct: 1050 EILSEFQD-----------LTAFRKWWDGVQNGSIKKSDDAQSSFRRRFRKNQATKLFLP 1098
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
P +V DAY NP+ S+ + A L + W E+TDE ++P
Sbjct: 1099 ASFPDPRVADAYLNPEVDSS-----PEPFQWGVPDLAALRAYLSSQIGWSTERTDEVLVP 1153
Query: 289 KIAERDLRRFANLRAN 304
I + + R +AN
Sbjct: 1154 VIRDMNRREKEGTQAN 1169
>gi|189239788|ref|XP_969346.2| PREDICTED: similar to XPG-like endonuclease CG10670-PA [Tribolium
castaneum]
Length = 565
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ +K + + LG+ C+ G EAEA CA LN L DG S DSD F +GAR VY
Sbjct: 108 SRFNHTLKRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFAYGARVVY 167
Query: 116 RDIWLGERGY-------VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
R+ + ++G V Y++ +L FGRN +I LALL GSDYS GV G+G +S
Sbjct: 168 RNFSISQQGNQAAKGGSVDVYDISVANERLNFGRNKIIALALLCGSDYSDGVHGIGKDSV 227
Query: 169 CQIVKSVGDNVVLQRIAS 186
+ V D+ +LQR+ S
Sbjct: 228 VKFFNLVKDDEILQRLRS 245
>gi|328857380|gb|EGG06497.1| hypothetical protein MELLADRAFT_36164 [Melampsora larici-populina
98AG31]
Length = 288
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDD----------KNLDKMSSLRRNM 54
L+Y + +G P +K T L S DD K D+ RR+
Sbjct: 62 LYYGIKPVFVFDGGAPVLKKQTIVEHLYFSSIFKLDDMRHQVDAEVNKLKDQRVKDRRDA 121
Query: 55 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 114
M K+ +++ G+P + EAEAQCA L + L DG + DSD+FLFG V
Sbjct: 122 DDVNLQMSKDIQSMLRLFGIPYVISPMEAEAQCAELLKKGLVDGIITDDSDVFLFGGTRV 181
Query: 115 YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
Y++++ + +V CY M+D+E++LG R LI LA LLGSDY++G+ G+GP +A +I+
Sbjct: 182 YKNMF-NQNKFVECYLMNDLEKELGLSRQRLIQLAYLLGSDYTEGLAGVGPVTAMEILSE 240
Query: 175 VGD 177
D
Sbjct: 241 FDD 243
>gi|417406083|gb|JAA49718.1| Putative 5'-3' exonuclease [Desmodus rotundus]
Length = 1189
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 111/240 (46%), Gaps = 40/240 (16%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 775 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 833
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++GV +G +A +I
Sbjct: 834 NKNKFVEYYQYVDFHNQLGLDRNKLIILAYLLGSDYTEGVPTVGCVTAMEI--------- 884
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET--------- 231
L +GL + E W E N++I N D ++++
Sbjct: 885 LNEFPGQGLEPLLNF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLPLGF 934
Query: 232 PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
P + V DAY P V L+ L ++ C ++F W KTDE + P
Sbjct: 935 PNTAVADAYLKP--------VVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 986
>gi|267421|sp|P14629.1|ERCC5_XENLA RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=Xeroderma pigmentosum group G-complementing
protein homolog
gi|312433|emb|CAA49597.1| XP-G related factor [Xenopus laevis]
Length = 1196
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 26/233 (11%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P + EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 801 MCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 859
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ DI +LG R+ LI LA LLGSDY++G+ +G SA +I
Sbjct: 860 SQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEI--------- 910
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L +GL + + KE WS E ++++ N D ++++ + ++
Sbjct: 911 LNEFPGQGLEPLVKF----KEWWS------EAQKDKKMRPNPNDTKVKKKLRLLDLQQSF 960
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 288
NP SA + V ++ F R + + C F W KTDE +LP
Sbjct: 961 PNPAVASAYLKPVVDE-SKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLP 1012
>gi|258577255|ref|XP_002542809.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
gi|237903075|gb|EEP77476.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
Length = 1143
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 116/254 (45%), Gaps = 18/254 (7%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 806 RRDADEVSHIMVTECQQLLKLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFG 865
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY + D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 866 GTRVYKNMF-NQAKFVECYLVSDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 924
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ D L K + + G S ++ ++ N L
Sbjct: 925 ILTEFSD-----------LEDFKDWWSQVQMGVSI-PDDVHSKFRKKFKKNAAKLFLPPA 972
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY P+ S S V +H + V W PE+TDE ++P I
Sbjct: 973 FPDRRVDAAYLEPEVDSDPSAFQWGVPDLEALRHFLMTAVG-----WSPERTDEVLVPVI 1027
Query: 291 AERDLRRFANLRAN 304
+ + R +AN
Sbjct: 1028 RDVNRRELEGTQAN 1041
>gi|356577959|ref|XP_003557088.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Glycine max]
Length = 76
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 58/75 (77%)
Query: 242 NPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANL 301
NPKC+ ADS+ VH+ LAQ+ FQ +L Q+C FF+WP EKTD YILP IAER+LRRFANL
Sbjct: 2 NPKCHQADSDIVHKGLAQYPFQRTKLQQICVGFFEWPSEKTDGYILPSIAERNLRRFANL 61
Query: 302 RANTLALGVDLPLQK 316
R + +G++LPL +
Sbjct: 62 RLTSSEVGMNLPLHE 76
>gi|225453885|ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera]
gi|296089141|emb|CBI38844.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 86/141 (60%), Gaps = 3/141 (2%)
Query: 49 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 108
S+ RN +EFS ++E L LG+P L+ EEAEA CA LN E D C ++DSD FL
Sbjct: 109 SVERN--AEFSRRVQECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFL 166
Query: 109 FGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPES 167
FGA+ V + + + + CY M DIE LG R LI ++LL+G+DY GV+G+G ++
Sbjct: 167 FGAKCVIKCLRPNCKEPLECYHMSDIESGLGLKRKHLIAISLLVGNDYDLNGVQGIGLDT 226
Query: 168 ACQIVKSVGDNVVLQRIASEG 188
A + V+ ++ +L R+ +G
Sbjct: 227 AVRFVQGFSEDEILNRLQEKG 247
>gi|327261246|ref|XP_003215442.1| PREDICTED: flap endonuclease GEN homolog 1-like [Anolis
carolinensis]
Length = 631
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G P +K +T +R + + R S +KE +
Sbjct: 70 LVFVMEGDAPKLKANTMEKR-------KEIRFGPSRKPGTTRTGRSHLKSFLKECLEMLE 122
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCY 129
LGVP ++ EAEA CA LN D C ++D D FL+GA+TVYR+ + + +V CY
Sbjct: 123 CLGVPWVQAAGEAEAMCAYLNSNGYVDACITNDGDAFLYGAQTVYRNFTMNTKDPHVDCY 182
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 184
+ IE KLG R SLI LA+LLG DY +GV G+G E A +++ ++ +LQR
Sbjct: 183 SISAIEEKLGCSRESLIGLAVLLGCDYLPKGVPGVGKEQALRLINTLKGQSLLQRF 238
>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
endonuclease, putative [Candida dubliniensis CD36]
gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
CD36]
Length = 992
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 715 EKFQKAKRDSDEVTEAMINDVQELLKRFGIPYITAPMEAEAQCAELFKIGLVDGIVTDDS 774
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGSDY++G++G+G
Sbjct: 775 DCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIG 833
Query: 165 PESACQIVKSVGD 177
P A +I+ G+
Sbjct: 834 PVQAMEILAEFGN 846
>gi|361129990|gb|EHL01866.1| putative DNA repair protein rad13 [Glarea lozoyensis 74030]
Length = 1157
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 38/302 (12%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
++LN PA + Y + L + + D RR+ S M +E + L
Sbjct: 739 FAKTLNFKTPAESQAAYEKELKALRNQQKKD---------RRDADDVTSAMNQECQILLK 789
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
G+P + EAEAQCA L + L DG + D DIFLFG VY++++ + V CY
Sbjct: 790 KFGIPYIIAPGEAEAQCAELVRQGLVDGAITDDCDIFLFGGTRVYKNLFNSNKD-VECYL 848
Query: 131 MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLS 190
DIE++L GR+ +I+LA LLGSDY++G+ G+G +A +++ LQ
Sbjct: 849 QKDIEQELSLGRDQMISLAQLLGSDYAEGLHGVGSVTAIELLSEFSSPTGLQDF------ 902
Query: 191 FVKRAKNSKKEGWSFKCNNKEESLNQEINV--------NGTDHSLQRETPFSQVIDAYSN 242
K W+ L++E + + L P V +AY
Sbjct: 903 ---------KHWWTSVQGPHPPPLSEETSTFRKKFRRAQASKLFLPAGFPSPAVAEAYYK 953
Query: 243 PKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLR 302
P S+ E R L L Q W E+TDE ++P I + + R +
Sbjct: 954 PHVDSSKEE--FRWGVPDL---EGLRGFLMQTIGWSQERTDEVLVPVIRDMNRRELEGTQ 1008
Query: 303 AN 304
+N
Sbjct: 1009 SN 1010
>gi|403272924|ref|XP_003928284.1| PREDICTED: DNA repair protein complementing XP-G cells [Saimiri
boliviensis boliviensis]
Length = 1638
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1221 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1279
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1280 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1330
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1331 LNEFPGRGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1380
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 1381 PNPAIAEAYLKPVVDDSQGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 1432
>gi|367044124|ref|XP_003652442.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
gi|346999704|gb|AEO66106.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
Length = 1226
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L +L DG + DSDIFLFG
Sbjct: 861 RRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLNLVDGIVTDDSDIFLFG 920
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + YV CY D+E +L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 921 GTRVYKNVFNSNK-YVECYLATDLETELSLSREQLISLAQLLGSDYTEGLPGVGPVTALE 979
Query: 171 IV 172
I+
Sbjct: 980 IL 981
>gi|291393206|ref|XP_002713064.1| PREDICTED: XPG-complementing protein isoform 1 [Oryctolagus
cuniculus]
Length = 1188
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 36/260 (13%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 764 MFLESQELLRLFGIPYVEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 822
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 823 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 873
Query: 181 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
L GL VK + E W +E NQ+I N D ++++ Q+
Sbjct: 874 LNEFPGHGLEPLVKFS-----EWW------QEAQKNQKIRPNPHDTKVKKKLRKLQLAPG 922
Query: 240 YSNPKCYSA-------DSEAVH---RVLAQHLFQHARLH---QVCAQFFQWPPEKTDEYI 286
+ NP A DS+ + + ++ + + C ++F W KTDE +
Sbjct: 923 FPNPAVAEAYLKPVVDDSKGAFLWGKPDPDKIREYPFILTACRFCQRYFGWNRSKTDESL 982
Query: 287 LPKIAERDLRRFANLRANTL 306
LP + + ++++ LR ++
Sbjct: 983 LPVLKQLNVQQ-TQLRIDSF 1001
>gi|398403715|ref|XP_003853324.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
gi|339473206|gb|EGP88300.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
Length = 1324
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 120/272 (44%), Gaps = 45/272 (16%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 964 RRDADEVTHIMITECQALLRLFGLPYITAPMEAEAQCAELVKLGLVDGIVTDDSDCFLFG 1023
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++ R LI++A LLGSDY++G+ G+GP +A +
Sbjct: 1024 GTRIYKNMF-NQAKFVECYLTSDLEKEFDLTRGKLISVAHLLGSDYTEGLPGVGPVTALE 1082
Query: 171 IVKSVG--DNVVLQRIASEGLSFVKRAKNSKKEGWSF-------KCNNKEESLNQEINVN 221
I+ G DN K WS K + ++ ++ N
Sbjct: 1083 IISEFGSLDNF--------------------KTWWSGVQMNQIPKSEDADKPFRKKFRRN 1122
Query: 222 GTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQ 276
T L P ++V AY P+ DS+A FQ L
Sbjct: 1123 ATKIFLPPSFPDARVDIAYQEPEV---DSDA-------QAFQWGVPDLDALRSFLMATIG 1172
Query: 277 WPPEKTDEYILPKIAERDLRRFANLRANTLAL 308
W E+TDE ++P I + + R +AN A
Sbjct: 1173 WSQERTDEVLVPVIKDMNRRLDEGTQANITAF 1204
>gi|431913228|gb|ELK14910.1| DNA repair protein complementing XP-G cell [Pteropus alecto]
Length = 1074
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 660 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 718
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 719 SKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 769
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET--------- 231
L GL + + E W E N++I N D ++++
Sbjct: 770 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLHLSPGF 819
Query: 232 PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
P + DAY P V L+ L ++ C ++F W KTDE + P
Sbjct: 820 PNPAIADAYLKP--------VVDDSKGSFLWGKPDLDKISIFCQRYFGWNRTKTDESLFP 871
>gi|74211217|dbj|BAE37682.1| unnamed protein product [Mus musculus]
Length = 1043
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFQESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
>gi|291393208|ref|XP_002713065.1| PREDICTED: XPG-complementing protein isoform 2 [Oryctolagus
cuniculus]
Length = 1203
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 36/260 (13%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 779 MFLESQELLRLFGIPYVEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 837
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 838 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 888
Query: 181 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
L GL VK + E W +E NQ+I N D ++++ Q+
Sbjct: 889 LNEFPGHGLEPLVKFS-----EWW------QEAQKNQKIRPNPHDTKVKKKLRKLQLAPG 937
Query: 240 YSNPKCYSA-------DSEAVH---RVLAQHLFQHARLH---QVCAQFFQWPPEKTDEYI 286
+ NP A DS+ + + ++ + + C ++F W KTDE +
Sbjct: 938 FPNPAVAEAYLKPVVDDSKGAFLWGKPDPDKIREYPFILTACRFCQRYFGWNRSKTDESL 997
Query: 287 LPKIAERDLRRFANLRANTL 306
LP + + ++++ LR ++
Sbjct: 998 LPVLKQLNVQQ-TQLRIDSF 1016
>gi|395527335|ref|XP_003765805.1| PREDICTED: uncharacterized protein LOC100931484 [Sarcophilus
harrisii]
Length = 1088
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 30/235 (12%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 671 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFS 730
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ +V Y+ D +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 731 KDK-FVEYYQYIDFHNQLGLDRSKLINLAYLLGSDYTEGIPSVGCVTAMEI--------- 780
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W+ E ++I N D ++++ Q+ +
Sbjct: 781 LNEFPGRGLEPLLKF----SEWWN------EAQKTKKIRPNPHDTKVKKKLRQLQLFPGF 830
Query: 241 SNPKCYSA-------DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
NP A DS+ L ++ + C ++F W KTDE +LP
Sbjct: 831 PNPAVAEAYLKPVVDDSKGAFLWGKPDL---EKIREFCQRYFGWNKTKTDESLLP 882
>gi|310790037|gb|EFQ25570.1| DNA excision repair protein [Glomerella graminicola M1.001]
Length = 1271
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 116/267 (43%), Gaps = 39/267 (14%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 925 RRDADEVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDCFLFG 984
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++L R LI +A LLGSDY++G+ G+GP +A +
Sbjct: 985 GTRIYKNMFNSNK-FVECYLSSDLEKELSLSREQLIAIAQLLGSDYTEGLPGVGPVTAVE 1043
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGW-SFKCNNKEESLN-------QEINVNG 222
I+ L R KE W + NN+ + + +
Sbjct: 1044 ILSEFPGKDGLDRF---------------KEWWQDVQMNNRPKEADAVSPFRRKFRKSQA 1088
Query: 223 TDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQW 277
T L P V DAY P+ DS H FQ L Q W
Sbjct: 1089 TKLFLPSGFPNPAVTDAYIRPEV---DSSPEH-------FQWGVPDLEGLRQFLMATIGW 1138
Query: 278 PPEKTDEYILPKIAERDLRRFANLRAN 304
E+TDE ++P I + + R + N
Sbjct: 1139 SKERTDEVLVPVIRDMNKRDMEGTQTN 1165
>gi|347833577|emb|CCD49274.1| similar to DNA excision repair protein [Botryotinia fuckeliana]
Length = 1341
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 131/296 (44%), Gaps = 39/296 (13%)
Query: 18 SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR------RNMGSEFS-CMIKEAKALGL 70
+I A + + + LN+ SE D + +LR R E S MI E +AL
Sbjct: 883 AIEAEEHARFASTLNNKSEKENHDSYEQDLKALRNQQKKDRRDADEVSHIMITECQALLR 942
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
G+P + EAEAQCA L L DG + DSDIFLFG VY++++ + V CY
Sbjct: 943 LFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFGGTRVYKNLFNSNK-LVECYL 1001
Query: 131 MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLS 190
D+E++L R LI++A LLGSDY++G+ G+GP +A +I+ + L+
Sbjct: 1002 SSDLEKELSLSREQLISIAHLLGSDYTEGIPGIGPVTAVEILSEFPSHAGLEEF------ 1055
Query: 191 FVKRAKNSKKEGWSFKCN-------NKEESLNQEI--NVNGTDHSLQRETPFSQVIDAYS 241
KE WS N E +L ++ T L P V +AY
Sbjct: 1056 ---------KEWWSLVQNPLTTLPLASEPTLFRKKFRRSQATKLFLPPAFPSQAVTEAYL 1106
Query: 242 NPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
P D ++ + +L + W E+ DE ++P I RD+ R
Sbjct: 1107 KP-----DVDSTAEAFQWGVPDLGQLREFLMATVGWSQERVDEILVPVI--RDMNR 1155
>gi|121699074|ref|XP_001267903.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
gi|119396045|gb|EAW06477.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
Length = 1140
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 115/258 (44%), Gaps = 18/258 (6%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 809 RRDADEVTQVMITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 868
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + YV CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 869 GTRVYKNMF-NQSKYVECYLTSDMEKEYALQRRKLISFAHLLGSDYTEGISGIGPVTALE 927
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ L + + G S N++ + ++ T L
Sbjct: 928 ILTEFS-----------SLEEFRDWWTQIQTGMSIP-NDQHAAFYKKFRKTATKIFLPPS 975
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P ++V AY P+ S S V H L W E+TDE ++P I
Sbjct: 976 FPDARVDTAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMTTIGWSQERTDEILVPVI 1030
Query: 291 AERDLRRFANLRANTLAL 308
+ + R +AN +
Sbjct: 1031 RDMNRREQEGTQANITSF 1048
>gi|354501934|ref|XP_003513043.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Cricetulus griseus]
Length = 1176
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 133/288 (46%), Gaps = 43/288 (14%)
Query: 41 DKNLDKMSSLRRNMGSEFSC------------------MIKEAKALGLSLGVPCLEGVEE 82
D NL+++ SL N+ +E + M E++ L G+P ++ E
Sbjct: 725 DINLEELDSLESNLLAEQNSLEAQKQQQERIAASVTGQMFLESQELLRLFGIPYIQAPME 784
Query: 83 AEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGR 142
AEAQCA+L+L G + DSDI+LFGAR VY++ + + +V Y+ D +LG R
Sbjct: 785 AEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FFNKNKFVEYYQYVDFHNQLGLDR 843
Query: 143 NSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEG 202
N LI LA LLGSDY++G+ +G +A +I L GL + + E
Sbjct: 844 NKLINLAYLLGSDYTEGIPTVGCVTAMEI---------LNEFPGRGLDPLLKF----SEW 890
Query: 203 WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD-SEAVHRVLAQHL 261
W E ++++ N D ++++ Q+ + NP A V L
Sbjct: 891 W------HEAQTSKKVAANPHDTKVKKKLRKLQLTPGFPNPAVADAYLRPVVDDSRGSFL 944
Query: 262 FQHA---RLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTL 306
+ ++ + C ++F W KTDE + P + + ++++ LR ++
Sbjct: 945 WGKPDVDKIREFCQRYFGWNKTKTDESLFPVLKQLNVQQ-TQLRIDSF 991
>gi|452824082|gb|EME31087.1| DNA excision repair protein ERCC-5 [Galdieria sulphuraria]
Length = 928
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 12/238 (5%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E + L LG+P ++ EAEAQCA + L +G + DSD FLFGA+TV+R+I+
Sbjct: 614 MCEEIRELLRMLGIPYIQAPMEAEAQCAYFSQVGLVEGVVTEDSDAFLFGAKTVFRNIF- 672
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ YV YEM+DIER LG R LI L+LLLGSDY+QG+ G+G +A +I+++
Sbjct: 673 EDKKYVEQYEMEDIERYLGLNREKLILLSLLLGSDYTQGIHGVGVVNATEIMRAFPSFEE 732
Query: 181 LQRIA--SEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 238
L A + LS + + E +F N+ ++++ N H P V+D
Sbjct: 733 LIEFAHWANQLSLKEERISLDSEDPNF-VKNEFFLKHRKMKRNWVIHD---SFPNKHVVD 788
Query: 239 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 296
AY P ++ E A+L + C F W +K + ++P + D R
Sbjct: 789 AYRYPMVDTSSIE-----FHCQRPNIAQLVEFCRAKFGWNSDKVKKLVIPVLKAYDAR 841
>gi|395833265|ref|XP_003789660.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing XP-G
cells [Otolemur garnettii]
Length = 1650
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 24/221 (10%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ + + +V Y+
Sbjct: 1244 FGIPYVQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FFNKNKFVEYYQY 1302
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
D +LG RN LI LA LLGSDY++G+ +G +A +I L GL
Sbjct: 1303 VDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI---------LNEFPGHGLEP 1353
Query: 192 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD-S 250
+ + E W+ E N +I N D ++++ Q+ + NP A
Sbjct: 1354 LLKF----SEWWN------EAQKNMKIRPNPHDTKVKKKLRKLQLTPGFPNPAVADAYLK 1403
Query: 251 EAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
V L+ R+ + C ++F W KTDE + P
Sbjct: 1404 PVVDDSKGSFLWGKPDLDRIREFCQRYFGWNRTKTDECLFP 1444
>gi|410947676|ref|XP_003980569.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells [Felis catus]
Length = 1128
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 108/232 (46%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 712 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 770
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDNV 179
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+ G +
Sbjct: 771 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGL 830
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
SE +++K + + + K K L L P V DA
Sbjct: 831 EPLLKFSEWWHEAQKSKKIRPDPYDTKVXKKLRKLQ-----------LTPGFPNPAVADA 879
Query: 240 YSNPKCYSADSEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
Y P V L+ L ++ C ++F W KTDE + P
Sbjct: 880 YLKP--------VVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 923
>gi|302845188|ref|XP_002954133.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
gi|300260632|gb|EFJ44850.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
Length = 254
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
+RN+G + A L GVP + AEAQCA L + L DG + D+D+FLFG
Sbjct: 79 QRNVGMPLKLNV--AIPLAAFKGVPTVSEPAAAEAQCAFLEVSGLVDGVVTDDNDVFLFG 136
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
AR VYR I+ ++ YV Y+M D+ER+LG R L +ALLLGSDY++G G+G +A +
Sbjct: 137 ARHVYRHIFENKK-YVEEYQMSDVERELGLTRERLAEMALLLGSDYTEGCGGIGIVNAVE 195
Query: 171 IVKSVGDNVVLQRIAS 186
+V++ LQR S
Sbjct: 196 VVQAFPGLEGLQRFRS 211
>gi|291235424|ref|XP_002737645.1| PREDICTED: DNA-repair protein complementing XP-G cells homolog
[Saccoglossus kowalevskii]
Length = 854
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M EAK L G+P + V+EAEAQCA LNL G + DSDI+LFG + VY++++
Sbjct: 659 MYVEAKELLTLFGLPYITSVQEAEAQCAYLNLTDQTYGTITDDSDIWLFGGKRVYKNMF- 717
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
++ +V CY ++IER+L R+ +I +A L+GSDY+ G+ G+G +A +++
Sbjct: 718 NQKKFVECYIAENIERQLLLNRDKMIQIAYLVGSDYTTGITGIGGVTAMELL 769
>gi|344244135|gb|EGW00239.1| DNA repair protein complementing XP-G cells-like [Cricetulus
griseus]
Length = 1028
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 133/288 (46%), Gaps = 43/288 (14%)
Query: 41 DKNLDKMSSLRRNMGSEFSC------------------MIKEAKALGLSLGVPCLEGVEE 82
D NL+++ SL N+ +E + M E++ L G+P ++ E
Sbjct: 577 DINLEELDSLESNLLAEQNSLEAQKQQQERIAASVTGQMFLESQELLRLFGIPYIQAPME 636
Query: 83 AEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGR 142
AEAQCA+L+L G + DSDI+LFGAR VY++ + + +V Y+ D +LG R
Sbjct: 637 AEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FFNKNKFVEYYQYVDFHNQLGLDR 695
Query: 143 NSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEG 202
N LI LA LLGSDY++G+ +G +A +I L GL + + E
Sbjct: 696 NKLINLAYLLGSDYTEGIPTVGCVTAMEI---------LNEFPGRGLDPLLKF----SEW 742
Query: 203 WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD-SEAVHRVLAQHL 261
W E ++++ N D ++++ Q+ + NP A V L
Sbjct: 743 W------HEAQTSKKVAANPHDTKVKKKLRKLQLTPGFPNPAVADAYLRPVVDDSRGSFL 796
Query: 262 FQHA---RLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTL 306
+ ++ + C ++F W KTDE + P + + ++++ LR ++
Sbjct: 797 WGKPDVDKIREFCQRYFGWNKTKTDESLFPVLKQLNVQQ-TQLRIDSF 843
>gi|351703064|gb|EHB05983.1| DNA repair protein complementing XP-G cells [Heterocephalus glaber]
Length = 1026
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 33/240 (13%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 603 MFLESQELLRLFGVPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFN 662
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 663 KDK-FVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 712
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W +E N+++ N D ++++ Q+ +
Sbjct: 713 LNEFPGRGLDPLLKF----SEWW------QEAQKNRKVRPNPNDTKVKKQLRKLQLTPGF 762
Query: 241 SNPKCYSA-------DSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 288
NP A DS+ + + R L C ++F W KTDE + P
Sbjct: 763 PNPAVAEAYLRPVVDDSKGAF-LWGKPDLDKIREYPWCLQTFCQRYFGWSRTKTDESLSP 821
>gi|407928397|gb|EKG21254.1| Xeroderma pigmentosum group G protein [Macrophomina phaseolina MS6]
Length = 1302
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 914 RRDADEVTQTMIAECQQLLSLFGLPYITAPMEAEAQCAELVDLGLVDGIVTDDSDIFLFG 973
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E + G R LI +A LLGSDY++G+ G+GP +A +
Sbjct: 974 GTRVYKNMF-NQAKFVECYLSQDLESEFGLTRRKLIAIAQLLGSDYTEGIPGVGPVTALE 1032
Query: 171 IVKSVGD 177
I+ GD
Sbjct: 1033 ILSEFGD 1039
>gi|224006438|ref|XP_002292179.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
gi|220971821|gb|EED90154.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
Length = 307
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 7/134 (5%)
Query: 52 RNMGSEFSCMIKEAKALGLSL----GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 107
RNM + S + E K L L G+P +E EAEAQCA L L DG + DSDIF
Sbjct: 4 RNMERDISTITDEMKEDILELLELCGIPWVESPSEAEAQCAALEELGLVDGVVTEDSDIF 63
Query: 108 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
+FG R VY++ + E+ YV Y D E++L G++ +I LA+LLG DY+ GV+G+G +
Sbjct: 64 VFGGRKVYKN-FFNEQQYVEAYYAKDAEKELALGKHQMIALAMLLGGDYTDGVKGVGIVN 122
Query: 168 ACQIVKS--VGDNV 179
+I+++ +G+++
Sbjct: 123 GMEILQAFPIGEDI 136
>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
Length = 1121
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 116/253 (45%), Gaps = 32/253 (12%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 782 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFG 841
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 842 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 900
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-----FKC-NNKEESLNQEINVNGTD 224
I+ D L+ ++ WS +K ++ E ++ N T
Sbjct: 901 ILTEFSD---LEEF---------------RDWWSQVQLGYKIPDDPHEGFRKKFKKNVTK 942
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 284
L P V AY P+ S S + V + + V W PE+TDE
Sbjct: 943 LFLPPGFPNKAVEKAYLEPEVDSDPSGFIWGVPDLDAVRQFLMATVG-----WSPERTDE 997
Query: 285 YILPKIAERDLRR 297
++P I RD+ R
Sbjct: 998 VLVPVI--RDVNR 1008
>gi|429853644|gb|ELA28704.1| DNA excision repair protein rad2 [Colletotrichum gloeosporioides Nara
gc5]
Length = 1240
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 118/261 (45%), Gaps = 27/261 (10%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 897 RRDADEVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFG 956
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++L R+ LI +A LLGSDY++G+ G+GP +A +
Sbjct: 957 GTRVYKNMFNSNK-FVECYLGSDLEKELSLSRDQLIAIAQLLGSDYTEGLPGVGPVTAVE 1015
Query: 171 IVKSV--GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 228
I+ D + R + + R K + + K ++ T L
Sbjct: 1016 ILSEFPGKDGLAKFRDWWQEVQMNSRPKEADATNPFRRKFRKSQA---------TKLFLP 1066
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTD 283
P V DAY P+ S+ + FQ L Q W E+TD
Sbjct: 1067 TGFPNPAVTDAYLRPEVDSSPEQ----------FQWGVPDLEGLRQFLMATIGWSKERTD 1116
Query: 284 EYILPKIAERDLRRFANLRAN 304
E ++P I + + R +AN
Sbjct: 1117 EVLVPVIRDMNKRDVEGTQAN 1137
>gi|345571348|gb|EGX54162.1| hypothetical protein AOL_s00004g195 [Arthrobotrys oligospora ATCC
24927]
Length = 1248
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSD 103
D+ RR+ MI E + L G+P + EAEAQCA L+NL L DG + D
Sbjct: 854 DQQKKDRRDADEVTKIMITECQQLLQMFGIPYITAPMEAEAQCAELVNL-GLVDGIVTDD 912
Query: 104 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 163
SDIFLFG VY++++ + YV CY D+E + R +I LA LLGSDY++G+ G+
Sbjct: 913 SDIFLFGGTRVYKNMF-NQAKYVECYLASDLENEYSLDRKKMIRLAHLLGSDYTEGLVGV 971
Query: 164 GPESACQIVKSVG 176
GP +A +++ + G
Sbjct: 972 GPVTALEVLANFG 984
>gi|187954383|gb|AAI41071.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1170
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
>gi|1209080|gb|AAA91039.1| XPG [Mus musculus]
gi|1209097|gb|AAB17885.1| XPG [Mus musculus]
Length = 1170
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
>gi|396470540|ref|XP_003838668.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
gi|312215236|emb|CBX95189.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
Length = 1312
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 130/287 (45%), Gaps = 29/287 (10%)
Query: 27 YRRRLNSGSEVTQD-DKNLDKMSSL----RRNMGSEFSCMIKEAKALGLSLGVPCLEGVE 81
+ + LN+ + V+ D DK L ++ + RR+ MI E + L G+P +
Sbjct: 933 FAQELNANTAVSVDFDKELKQLRAQQKKDRRDADEVTQTMITECQHLLTLFGLPYITAPM 992
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFG 141
EAEAQCA L L DG + DSD FLFG VY++++ + +V CY D+ +
Sbjct: 993 EAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAK-FVECYLASDLASEFSLT 1051
Query: 142 RNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKE 201
R+ LI +A LLGSDY+ G+ G+GP +A +I+ D L K+ ++
Sbjct: 1052 RDKLIAIAQLLGSDYTPGIPGIGPVTALEILSEFPD-----------LEQFKQWWTGVQD 1100
Query: 202 GWSFKCNNKEESLNQEINVN-GTDHSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVL 257
G K + + N T L P +V DAY +P+ S V +
Sbjct: 1101 GSIPKAADATSPFRKRFRKNQATKLFLPPTFPDPRVADAYLHPEVDSDPQPFEWGVPDLA 1160
Query: 258 AQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRAN 304
A F +++ W E+TDE ++P I + + R +AN
Sbjct: 1161 ALRAFLQSQIG--------WSWERTDEVLVPVIRDMNRREKEGTQAN 1199
>gi|74141263|dbj|BAE35937.1| unnamed protein product [Mus musculus]
Length = 898
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 664 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 722
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 723 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 773
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 774 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 823
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 824 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 875
>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
Length = 1168
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 866 RRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGIVDGIVTDDSDTFLFG 925
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++L R+ LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 926 GTRVYKNMFNSNK-FVECYISKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVE 984
Query: 171 IV 172
I+
Sbjct: 985 IL 986
>gi|432119340|gb|ELK38422.1| DNA repair protein complementing XP-G cells [Myotis davidii]
Length = 1164
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 39/228 (17%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 776 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 834
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 835 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIATVGCVTAMEI--------- 885
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 886 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 935
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
NP A + V ++F W KTDE + P
Sbjct: 936 PNPAVADAYLKPV-------------------RYFGWNRTKTDESLFP 964
>gi|443920093|gb|ELU40082.1| flap structure-specific endonuclease [Rhizoctonia solani AG-1 IA]
Length = 1377
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 71/108 (65%), Gaps = 2/108 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP + EAEAQCA L L +G + DSD+FLFGA VYR+++ + V C+
Sbjct: 960 FGVPFVNAPMEAEAQCAFLAQHGLVEGVITDDSDVFLFGAGRVYRNMF-NQSKTVECFLA 1018
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDN 178
D++R+LG R +LI+LA LLGSDY++G+ G+GP A +I+K G+N
Sbjct: 1019 ADLDRELGLDRETLISLAYLLGSDYTEGLPGVGPVVAMEIMKEFPGEN 1066
>gi|170172544|ref|NP_035859.2| DNA repair protein complementing XP-G cells homolog [Mus musculus]
Length = 1170
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
>gi|110430659|gb|ABG73449.1| DNA repair protein [Oryza brachyantha]
Length = 629
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
++F+ +KE L LG+P L E EA CA LN E D C +SDSD FLFGA+TV
Sbjct: 122 AKFTRYVKECVELLEYLGMPVLRAKGEGEALCAQLNNEGHVDACITSDSDAFLFGAKTVI 181
Query: 116 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
+ + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A + V+
Sbjct: 182 KVLRSNCKEPFECYNMTDIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQL 241
Query: 175 VGDNVVLQRIASEG 188
++ VL ++ G
Sbjct: 242 FDEDTVLDKLYEIG 255
>gi|325095909|gb|EGC49219.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H88]
Length = 1159
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 114/247 (46%), Gaps = 20/247 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 817 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 876
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY +D+E++ RN LI A LLGSDY++G+ G+GP SA +
Sbjct: 877 GTRVYKNMF-NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALE 935
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ L+ + S V+ N ++ S ++ N T L
Sbjct: 936 ILTEF---PTLEDF-RDWWSQVQMGANLPEDSHSI--------FRKKFKKNVTKLFLPPG 983
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY PK S S + L Q W E+TDE ++P I
Sbjct: 984 FPDKRVDTAYLEPKVDSDPS-----AFQWGVPDLNALRQFLMSTIGWSQERTDEVLVPVI 1038
Query: 291 AERDLRR 297
RD+ R
Sbjct: 1039 --RDMNR 1043
>gi|367019746|ref|XP_003659158.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
gi|347006425|gb|AEO53913.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
Length = 1244
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 33/264 (12%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 863 RRDADEVTQVMVTECQALLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 922
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + YV CY D+E +L R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 923 GTRVYKNMFNSNK-YVECYLAKDLETELSLSREQLIALAQLLGSDYTEGLPGVGPVTALE 981
Query: 171 IVKSVGDNVVLQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
I+ +GL+ F ++ + G + + + + T L
Sbjct: 982 ILSEF--------PGRDGLAEFRDWWQDVQNHGRPKEADADSPFRRKFRKAHATKLFLPV 1033
Query: 230 ETPFSQVIDAYSNPKCYS---------ADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPE 280
P V DAY +P+ S D + + R L + + W E
Sbjct: 1034 GFPNPAVFDAYLHPEVDSNTEPFQWGVPDLDGLRRFLMETI--------------GWSQE 1079
Query: 281 KTDEYILPKIAERDLRRFANLRAN 304
+TDE ++P I + + R ++N
Sbjct: 1080 RTDEVLVPVIRDMNKRDVEGTQSN 1103
>gi|449454486|ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449472478|ref|XP_004153607.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449516535|ref|XP_004165302.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
Length = 606
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 38 TQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 97
T D ++ S+ RN +F+ +KE L GVP LE EAEA CA LN + D
Sbjct: 98 TSDLPKVEDRISVHRN--RKFAKCVKECVELLELFGVPVLEAKGEAEALCAELNQKGFVD 155
Query: 98 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
C ++DSD FLFGA+ V + + + CY M DIE LGF RN LI ++LL+G+D+
Sbjct: 156 ACITADSDAFLFGAKCVIKSFNPNSKEPLECYFMSDIEAALGFNRNHLIAISLLVGNDHD 215
Query: 158 -QGVRGLGPESACQIVKSVGDNVVLQRIASEG 188
GV+G+G ++A V+ D+ +L ++ G
Sbjct: 216 LNGVQGVGLDTAVCFVQDYTDDEILNKLYEIG 247
>gi|5020|emb|CAA47291.1| excision repair protein [Schizosaccharomyces pombe]
Length = 1113
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 17/260 (6%)
Query: 46 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 105
K S +R+ MIKE + L G+P + +EAEAQC+ L L DG + DSD
Sbjct: 742 KKGSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSD 801
Query: 106 IFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 165
+FLFG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP
Sbjct: 802 VFLFGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGP 860
Query: 166 ESACQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 224
A +I+ GD GL K+ G + K N+ + + IN
Sbjct: 861 VLALEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGK 910
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 284
L E P V +AY +P DS+ + L L Q W ++T+E
Sbjct: 911 IILPSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDL---DELRQFLMATVGWSKQRTNE 965
Query: 285 YILPKIAERDLRRFANLRAN 304
+LP I + ++F ++N
Sbjct: 966 VLLPVIQDMHKKQFVGTQSN 985
>gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum]
Length = 951
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 119/257 (46%), Gaps = 30/257 (11%)
Query: 47 MSSLRRN---MGSEFSCMI-KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 102
++SL+R M S + I E K L G+P + EAEAQCA L +G +
Sbjct: 645 LASLQRKSDRMASSVTQKITSEIKGLLKLFGIPYITAPMEAEAQCAFLEKIGRTEGTVTD 704
Query: 103 DSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 162
DSD++LFGA VY+D + ++ YV ++ DI+++ RNS I LA L+GSDY+ G+ G
Sbjct: 705 DSDVWLFGANVVYKDFFDNQK-YVKQFKSIDIKQQFALSRNSFIQLAFLVGSDYTNGIDG 763
Query: 163 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGW---SFKCNNKEESLNQEIN 219
+GP SA +I+ S ++ E L +K NSK E + F K +
Sbjct: 764 IGPVSAIEIL-SFFESKTKNMNIEEKLLKIKEIANSKAEVYCDIPFMKKLKSTKI----- 817
Query: 220 VNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPP 279
G D P VI+AY +P ++ L Q + Q F W
Sbjct: 818 --GNDF------PNKAVINAYLHPIVNESNESFNWGTL-----QVDSIIQFAQTNFDWDV 864
Query: 280 EKTDEYILP---KIAER 293
KT + P K+AER
Sbjct: 865 SKTKSKLAPVLKKVAER 881
>gi|357507117|ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
gi|355498862|gb|AES80065.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 612
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S FS ++E L LG+P L+ EAEA CA LN E D C + DSD FLFGA+ +
Sbjct: 114 STFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCII 173
Query: 116 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
+ + CY M DIE LG R LI ++LL+G+D+ GV+G+G +SA + V++
Sbjct: 174 KSFSPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQA 233
Query: 175 VGDNVVLQRIASEG 188
G++ +L R+ G
Sbjct: 234 FGEDDILNRLHEIG 247
>gi|124360865|gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
Length = 547
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S FS ++E L LG+P L+ EAEA CA LN E D C + DSD FLFGA+ +
Sbjct: 49 STFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCII 108
Query: 116 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
+ + CY M DIE LG R LI ++LL+G+D+ GV+G+G +SA + V++
Sbjct: 109 KSFSPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQA 168
Query: 175 VGDNVVLQRIASEG 188
G++ +L R+ G
Sbjct: 169 FGEDDILNRLHEIG 182
>gi|74215723|dbj|BAE23409.1| unnamed protein product [Mus musculus]
Length = 1166
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
>gi|334346854|ref|XP_001376389.2| PREDICTED: hypothetical protein LOC100025456 [Monodelphis domestica]
Length = 1410
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 49/287 (17%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 922 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFS 981
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ +V Y+ D +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 982 KDK-FVEYYQYVDFHNQLGLDRSKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1031
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W+ E ++I N D ++++ Q+ +
Sbjct: 1032 LNEFPGHGLEPLLKF----SEWWN------EAQKIKKIRPNPHDTKVKKKLRQLQLSPGF 1081
Query: 241 SNPKCYSA-------DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI--- 290
NP A DS+ L ++ + C ++F W KTDE +LP +
Sbjct: 1082 PNPAVAEAYLKPVVDDSKGAFLWGKPDL---EKIREFCQRYFGWNRTKTDESLLPVLKQL 1138
Query: 291 -AERDLRRFANLRANTLALGVDLPLQKVPVKCP---ITGIIKSRKLQ 333
A++ L + L L + C ITG+I S++ Q
Sbjct: 1139 NAQQQLSKLMQL------------LLSASIACNWLVITGLIPSKRSQ 1173
>gi|156395868|ref|XP_001637332.1| predicted protein [Nematostella vectensis]
gi|156224443|gb|EDO45269.1| predicted protein [Nematostella vectensis]
Length = 250
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 4/171 (2%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRL--NSGSEVTQDDKNLDKMSSLRRNMGSEFSC-M 61
L Y + +G +P +K T R + + ++ + L + + +E S M
Sbjct: 66 LFYRVKPVFVFDGGVPVLKKKTLVRAYLEEMQTNLNREQRTLQSERARQARASAEVSTEM 125
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
+ E++ L GVP L EAEAQCA L++ DG + DSD+FLFG R VY++I+
Sbjct: 126 LNESQELLRLFGVPFLVSPMEAEAQCAFLDMTGQTDGTITDDSDVFLFGGRRVYKNIF-N 184
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ + CY +DI++ L R+ +I LA + GSDY++G++GLG SA +++
Sbjct: 185 QNKHAECYTCEDIDKGLALSRSKMIKLAFVTGSDYTEGIQGLGAVSAMEVL 235
>gi|312377995|gb|EFR24684.1| hypothetical protein AND_10542 [Anopheles darlingi]
Length = 1428
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 12/229 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP + EAEAQCA LN L DG + DSDI+LFG + VY++ + ++ V+ + +
Sbjct: 933 FGVPYIVAPMEAEAQCAFLNQIELTDGTITDDSDIWLFGGQKVYKN-FFNQQKLVLEFTI 991
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
+ IE+ R LI LALL+GSDY+ G+ G+G +A +I+ S SE +S
Sbjct: 992 EGIEQAFQMDRKKLIQLALLVGSDYTTGIHGIGAVTALEILASFPPTPEQPGETSELMSM 1051
Query: 192 VKRAKNSKKEGWSFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSNPKC-YSA 248
+ + K W N + I + + + P + V++AY P YS
Sbjct: 1052 LSGLR--KFRDWWQHSRNGTATTGTRIALKSKLKNIDIGEGFPNTGVVEAYLKPTVDYSE 1109
Query: 249 DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+ A L +AR Q F W KTD+ +LP + D R+
Sbjct: 1110 EEFTWGYPDADRLRDYAR------QKFGWTRSKTDDILLPVLKRLDERK 1152
>gi|340517177|gb|EGR47422.1| predicted protein [Trichoderma reesei QM6a]
Length = 1166
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 15/255 (5%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 857 RRDADEVTQTMIAECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFG 916
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E+++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 917 GTRVYKNMFNSNK-FVECYIASDLEKEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 975
Query: 171 IVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
I+ G + ++Q E V+ ++ KE +F ++ +Q T L
Sbjct: 976 ILSEFPGKDGLVQ--FREWWKEVQ-SQTRPKEADAFSPFRRKFRKSQ-----ATKLFLPL 1027
Query: 230 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 289
P V +AY +P S+ + + A L + W E+TDE ++P
Sbjct: 1028 GFPSPAVYEAYLHPMVDSSTEK-----FQWGVPDVAGLREYLMATIGWSKERTDEVLVPV 1082
Query: 290 IAERDLRRFANLRAN 304
I + + R ++N
Sbjct: 1083 IRDMNKREIEGTQSN 1097
>gi|317028500|ref|XP_001390185.2| single-stranded DNA endonuclease [Aspergillus niger CBS 513.88]
Length = 1100
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSD+FLFG
Sbjct: 759 RRDADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFG 818
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 819 GTRVYKNMF-NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALE 877
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ G L + + G + N+ + ++ + T L
Sbjct: 878 ILTEFG-----------TLEDFRDWWTQVQTGLNM-GNDSHATFYKKFKKHATKIFLPPS 925
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY P+ S S V H L W E+TDE ++P I
Sbjct: 926 FPDPRVDAAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMSTIGWSQERTDEVLVPVI 980
Query: 291 AERDLRR 297
RD+ R
Sbjct: 981 --RDMNR 985
>gi|294459945|ref|NP_001170894.1| DNA repair protein complementing XP-G cells [Taeniopygia guttata]
Length = 1176
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 26/242 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCALL+L G + DSD++LFG R VY++ +
Sbjct: 774 MFLESQELLRLFGIPYIEAPTEAEAQCALLDLTDQTSGTITDDSDVWLFGGRHVYKN-FF 832
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ Y+ Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 833 SQNKYIEYYQYVDFQNELGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 883
Query: 181 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
L GL +K A E W+ E N+++ N D ++++ Q+
Sbjct: 884 LNEFPGHGLEPLLKFA-----EWWN------EAQKNKKVMPNPHDTKVKKKLRELQLYSG 932
Query: 240 YSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDL 295
+ NP A V + + Q+ C F W K D +LP + + +L
Sbjct: 933 FPNPAVAEAYLKPVVDESRGSFTWGKPDVEQIREFCKDHFGWTRTKIDGILLPVMKQLNL 992
Query: 296 RR 297
++
Sbjct: 993 QQ 994
>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
Length = 1120
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 781 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFG 840
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 841 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 899
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 224
I+ D L+ ++ WS + NK ++ N T
Sbjct: 900 ILTEFSD---LEEF---------------RDWWSQVQLGNKIPDDPHAGFRKKFKKNTTK 941
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 281
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 942 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVG--------WSPER 993
Query: 282 TDEYILPKIAERDLRRFANLRANTLAL 308
TDE ++P I + + R ++N
Sbjct: 994 TDEVLVPVIRDANRREQEGTQSNITGF 1020
>gi|119178413|ref|XP_001240880.1| hypothetical protein CIMG_08043 [Coccidioides immitis RS]
gi|392867161|gb|EAS29637.2| DNA excision repair protein (rad2) [Coccidioides immitis RS]
Length = 1142
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 114/254 (44%), Gaps = 18/254 (7%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 805 RRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFG 864
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 865 GTRIYKNMF-NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 923
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ GL + + + G + ++ ++ N L
Sbjct: 924 ILTEF-----------PGLEEFRDWWSKVQMGVTI-SDDTHSKFRKKFKKNAAKLFLPPA 971
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY P+ D A + L Q W PE+TDE ++P I
Sbjct: 972 FPDKRVDIAYLEPEV-DPDPSAFQWGVP----DLEALRQFLMSTVGWSPERTDEVLVPVI 1026
Query: 291 AERDLRRFANLRAN 304
+ + R +AN
Sbjct: 1027 RDVNRRELEGTQAN 1040
>gi|350632743|gb|EHA21110.1| hypothetical protein ASPNIDRAFT_45646 [Aspergillus niger ATCC 1015]
Length = 1130
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSD+FLFG
Sbjct: 789 RRDADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFG 848
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 849 GTRVYKNMF-NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALE 907
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ G L + + G + N+ + ++ + T L
Sbjct: 908 ILTEFG-----------TLEDFRDWWTQVQTGLNM-GNDSHATFYKKFKKHATKIFLPPS 955
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY P+ S S V H L W E+TDE ++P I
Sbjct: 956 FPDPRVDAAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMSTIGWSQERTDEVLVPVI 1010
Query: 291 AERDLRR 297
RD+ R
Sbjct: 1011 --RDMNR 1015
>gi|19112887|ref|NP_596095.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe 972h-]
gi|13432230|sp|P28706.2|RAD13_SCHPO RecName: Full=DNA repair protein rad13
gi|3130034|emb|CAA19011.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe]
Length = 1112
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 17/257 (6%)
Query: 49 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 108
S +R+ MIKE + L G+P + +EAEAQC+ L L DG + DSD+FL
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFL 803
Query: 109 FGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
FG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP A
Sbjct: 804 FGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLA 862
Query: 169 CQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSL 227
+I+ GD GL K+ G + K N+ + + IN L
Sbjct: 863 LEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGKIIL 912
Query: 228 QRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 287
E P V +AY +P DS+ + L L Q W ++T+E +L
Sbjct: 913 PSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDL---DELRQFLMATVGWSKQRTNEVLL 967
Query: 288 PKIAERDLRRFANLRAN 304
P I + ++F ++N
Sbjct: 968 PVIQDMHKKQFVGTQSN 984
>gi|134057863|emb|CAK38230.1| unnamed protein product [Aspergillus niger]
Length = 916
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSD+FLFG
Sbjct: 575 RRDADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFG 634
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 635 GTRVYKNMF-NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALE 693
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ G L + + G + N+ + ++ + T L
Sbjct: 694 ILTEFG-----------TLEDFRDWWTQVQTGLNM-GNDSHATFYKKFKKHATKIFLPPS 741
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY P+ S S V H L W E+TDE ++P I
Sbjct: 742 FPDPRVDAAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMSTIGWSQERTDEVLVPVI 796
Query: 291 AERDLRR 297
RD+ R
Sbjct: 797 --RDMNR 801
>gi|302507858|ref|XP_003015890.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
gi|291179458|gb|EFE35245.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
Length = 1120
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 781 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFG 840
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + YV CY D+E++ R L++ + LLGSDY++G+ G+GP +A +
Sbjct: 841 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLVSFSHLLGSDYTEGIPGIGPVTALE 899
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 224
I+ D L+ K+ WS + NK ++ N T
Sbjct: 900 ILTEFSD---LEEF---------------KDWWSQVQLGNKIPDDPHAGFRKKFKKNITK 941
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 281
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 942 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVG--------WSPER 993
Query: 282 TDEYILPKIAERDLRRFANLRANTLAL 308
TDE ++P I + + R ++N
Sbjct: 994 TDEVLVPVIRDANRREQEGTQSNITGF 1020
>gi|408360334|sp|P35689.4|ERCC5_MOUSE RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=DNA excision repair protein ERCC-5;
AltName: Full=Xeroderma pigmentosum group
G-complementing protein homolog
Length = 1170
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
NP A V L+ + ++ C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYP 978
>gi|225558184|gb|EEH06469.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus G186AR]
Length = 1159
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 817 RRDADEVSHIMISECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 876
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY +D+E++ RN LI A LLGSDY++G+ G+GP SA +
Sbjct: 877 GTRVYKNMF-NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALE 935
Query: 171 IV 172
I+
Sbjct: 936 IL 937
>gi|148664472|gb|EDK96888.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1171
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 25/233 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV----CAQFFQWPPEKTDEYILP 288
NP A V L+ + ++ C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIRDTFCQRYFGWNRMKTDESLYP 979
>gi|334182224|ref|NP_001184887.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332189225|gb|AEE27346.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 598
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
FS ++E + L L LG+P L+ EAEA CA LN + D C + DSD FLFGA V +D
Sbjct: 116 FSEWVRECELLEL-LGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKD 174
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 176
I R CY M IE LG R LI ++LL+G+DY S GV G+G + A +IV+
Sbjct: 175 IKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFS 234
Query: 177 DNVVLQRIASEG 188
++ VL+R+ G
Sbjct: 235 EDQVLERLQDIG 246
>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 1191
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 867 RRDADEVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVKLGIVDGIVTDDSDTFLFG 926
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++L R+ LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 927 GTRVYKNMFNSNK-FVECYIGKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVE 985
Query: 171 IV 172
I+
Sbjct: 986 IL 987
>gi|358375820|dbj|GAA92396.1| DNA excision repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 1135
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSD+FLFG
Sbjct: 791 RRDADEVSQVMITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDVFLFG 850
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 851 GTRVYKNMF-NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALE 909
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ G E + + + G N+ + ++ + T L
Sbjct: 910 ILTEFG-------TLEEFRDWWTQVQTGLNMG-----NDSHATFYKKFKKHATKIFLPPS 957
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY P+ S S V H L W E+TDE ++P I
Sbjct: 958 FPDPRVDAAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMSTIGWSQERTDEVLVPVI 1012
Query: 291 AERDLRR 297
RD+ R
Sbjct: 1013 --RDMNR 1017
>gi|240273423|gb|EER36944.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H143]
Length = 1159
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 817 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 876
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY +D+E++ RN LI A LLGSDY++G+ G+GP SA +
Sbjct: 877 GTRVYKNMF-NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALE 935
Query: 171 IV 172
I+
Sbjct: 936 IL 937
>gi|255943339|ref|XP_002562438.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587171|emb|CAP94835.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1083
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ + MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 755 RRDADEVTTIMINECQQLLTLFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFG 814
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 815 GTRVYKNMF-NQSKFVECYLTSDLEKEYALHRQKLISFAHLLGSDYTEGIPGIGPVTALE 873
Query: 171 IV 172
I+
Sbjct: 874 IL 875
>gi|425769594|gb|EKV08085.1| DNA excision repair protein Rad2 [Penicillium digitatum Pd1]
gi|425771041|gb|EKV09495.1| DNA excision repair protein Rad2 [Penicillium digitatum PHI26]
Length = 1130
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ + MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 802 RRDADEVTTIMINECQQLLALFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFG 861
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 862 GTRVYKNMF-NQSKFVECYLTSDLEKEYALHRQKLISFAHLLGSDYTEGIPGIGPVTALE 920
Query: 171 IV 172
I+
Sbjct: 921 IL 922
>gi|119468577|ref|XP_001257869.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
gi|119406021|gb|EAW15972.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
Length = 1132
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 791 RRDADEVTQVMITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 850
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 851 GTRVYKNMF-NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALE 909
Query: 171 IV 172
I+
Sbjct: 910 IL 911
>gi|451997573|gb|EMD90038.1| hypothetical protein COCHEDRAFT_1106592 [Cochliobolus heterostrophus
C5]
Length = 1297
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 120/256 (46%), Gaps = 20/256 (7%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 109
RR+ MI E + L G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 931 RRDADEVTQTMISECQQLLTLFGLPYITAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 989
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G VY++++ + +V CY D+ + R LI +A LLGSDY++G+ G+GP +A
Sbjct: 990 GGTRVYKNMFNAAK-FVECYLSSDLTSEFSLTRQKLIDIAQLLGSDYTEGLPGIGPVTAL 1048
Query: 170 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQ 228
+I+ D L+ ++ + + G K ++ + S + N T L
Sbjct: 1049 EILSEFQD-----------LTSFRKWWDGVQNGTIKKSDDAQSSFRKRFRKNQATKLFLP 1097
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
P +V +AY +P+ S+ + A L + W E+TDE ++P
Sbjct: 1098 TSFPDPRVAEAYLHPEVDSS-----PEPFQWGVPDLAALRAYLSSQIGWSTERTDEVLVP 1152
Query: 289 KIAERDLRRFANLRAN 304
I + + R +AN
Sbjct: 1153 VIRDMNRREKEGTQAN 1168
>gi|307176270|gb|EFN65901.1| DNA-repair protein complementing XP-G cells [Camponotus floridanus]
Length = 1193
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EA+ L G+P + EAEAQCA L L +G + DSDI+LFG + VY++ + R
Sbjct: 825 EAQELLRLFGIPYIVAPMEAEAQCAYLEQIELTNGTITDDSDIWLFGGQYVYKNFFNNNR 884
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV---GDNVV 180
V+ + DI+ RN LI LALL+GSDY+ GV G+GP +A +I+ + GDN++
Sbjct: 885 -RVLQFHAYDIQHHFKLSRNQLIQLALLVGSDYTTGVAGIGPVTALEILAAFPAEGDNIL 943
Query: 181 LQRIASEGL----SFVKRAKNSKKEGWSFKCNN 209
GL S++K K S K G K N
Sbjct: 944 ------HGLYKFCSWIKEGKPSGKMGLRNKLRN 970
>gi|83766314|dbj|BAE56457.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1066
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 18/258 (6%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 796 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFG 855
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 856 GTRVYKNMF-NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ + L + + G + + + + ++ + L
Sbjct: 915 ILTEFSN-----------LEEFRDWWTQVQMGMNL-SDGEHAAFYKKFRKQASKIFLSPS 962
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P SQV AY P+ S S V H ++ + + W E+TDE ++P I
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLHGLRNFLMATIG-----WSQERTDEVLVPVI 1017
Query: 291 AERDLRRFANLRANTLAL 308
+ + R ++N A
Sbjct: 1018 RDMNRREQEGTQSNITAF 1035
>gi|297842934|ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
gi|297335190|gb|EFH65607.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
F +KE L L +P L+ EAEA CA LN E D C + DSD FLFGA+ V +D
Sbjct: 116 FCEWVKECVELLELLSIPVLKANGEAEALCAQLNSEGYVDACITPDSDAFLFGAKCVIKD 175
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 176
I R CY M DIE LG R LI ++LL+G+DY S GV G+G + A +IV+
Sbjct: 176 IKPNSREPFECYHMSDIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFS 235
Query: 177 DNVVLQRIASEG 188
++ +L+R+ G
Sbjct: 236 EDEILERLQDIG 247
>gi|296412156|ref|XP_002835792.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629585|emb|CAZ79949.1| unnamed protein product [Tuber melanosporum]
Length = 914
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 16/243 (6%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M++E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 545 RRDADEVTQAMVQECQQLLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 604
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI +A LLGSDY++GV +GP +A +
Sbjct: 605 GTRVYKNMF-NQAKFVECYLAGDLEKEYALDRTGLIRIAHLLGSDYTEGVPTVGPVTAME 663
Query: 171 IVKSVGDNVVLQRIASE-GLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
+ L AS+ GL+ K + + G ++ + ++ N T L
Sbjct: 664 L---------LAEFASDNGLTEFKEWWTAVQTGLRKPADDDDNPFRKKFRKNATKVFLPT 714
Query: 230 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 289
P +V +AY +P+ S+ + L + W E+TDE ++P
Sbjct: 715 NFPDPRVDEAYMHPEVDHDPSQ-----FEWGMPDLDGLRRFLMATVGWSQERTDEVLVPV 769
Query: 290 IAE 292
I +
Sbjct: 770 IKD 772
>gi|159124202|gb|EDP49320.1| DNA excision repair protein Rad2 [Aspergillus fumigatus A1163]
Length = 1130
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 789 RRDADEVTQVMITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 848
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 849 GTRVYKNMF-NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALE 907
Query: 171 IV 172
I+
Sbjct: 908 IL 909
>gi|403177167|ref|XP_003335732.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172758|gb|EFP91313.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1403
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L DG + DSD+FLFG VY++++ + +V CY M
Sbjct: 967 FGIPFVVSPMEAEAQCAELLKLGLVDGIITDDSDVFLFGGHRVYKNLF-NQNKFVECYLM 1025
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+D++++LG + LI LA LLGSDY+ G+ G+GP +A +I+
Sbjct: 1026 NDLDQELGLDQQKLIQLAFLLGSDYTVGLNGVGPVTAMEIL 1066
>gi|334182222|ref|NP_171691.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|357529503|sp|Q9LPD2.3|GENL1_ARATH RecName: Full=Flap endonuclease GEN-like 1
gi|332189224|gb|AEE27345.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 599
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
FS ++E L LG+P L+ EAEA CA LN + D C + DSD FLFGA V +D
Sbjct: 116 FSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKD 175
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 176
I R CY M IE LG R LI ++LL+G+DY S GV G+G + A +IV+
Sbjct: 176 IKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFS 235
Query: 177 DNVVLQRIASEG 188
++ VL+R+ G
Sbjct: 236 EDQVLERLQDIG 247
>gi|317140876|ref|XP_001818459.2| single-stranded DNA endonuclease [Aspergillus oryzae RIB40]
Length = 1135
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 18/258 (6%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 796 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFG 855
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 856 GTRVYKNMF-NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ + L + + G + + + + ++ + L
Sbjct: 915 ILTEFSN-----------LEEFRDWWTQVQMGMNL-SDGEHAAFYKKFRKQASKIFLSPS 962
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P SQV AY P+ S S V H ++ + + W E+TDE ++P I
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLHGLRNFLMATIG-----WSQERTDEVLVPVI 1017
Query: 291 AERDLRRFANLRANTLAL 308
+ + R ++N A
Sbjct: 1018 RDMNRREQEGTQSNITAF 1035
>gi|391869945|gb|EIT79134.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 1066
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 115/258 (44%), Gaps = 18/258 (6%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 796 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFG 855
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 856 GTRVYKNMF-NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ + L + + G + + + + ++ + L
Sbjct: 915 ILTEFSN-----------LEEFRDWWTQVQMGMNL-SDGEHAAFYKKFRKQASKIFLSPS 962
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P SQV AY P+ S S V H L W E+TDE ++P I
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMATIGWSQERTDEVLVPVI 1017
Query: 291 AERDLRRFANLRANTLAL 308
+ + R ++N A
Sbjct: 1018 RDMNRREQEGTQSNITAF 1035
>gi|67538092|ref|XP_662820.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|40743207|gb|EAA62397.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|259484675|tpe|CBF81100.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 1141
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 798 RRDADEVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 857
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + YV CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 858 GTRVYKNMF-NQSKYVECYLTADLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 916
Query: 171 IV 172
I+
Sbjct: 917 IL 918
>gi|449272261|gb|EMC82261.1| DNA repair protein complementing XP-G cell [Columba livia]
Length = 1133
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 119/258 (46%), Gaps = 34/258 (13%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 722 MFLESQELLRLFGIPYIEAPMEAEAQCAVLDLTDQTSGTITDDSDVWLFGARHVYKN-FF 780
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ YV Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 781 SQNKYVEYYQYVDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 831
Query: 181 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
L GL +K A E W+ E N+++ N D ++++ Q+
Sbjct: 832 LNEFPGRGLEPLLKFA-----EWWN------EAQKNKKLRPNPHDTKVKKKLRELQLASG 880
Query: 240 YSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV----------CAQFFQWPPEKTDEYILP 288
+ NP A V + + Q+ C F W K DE + P
Sbjct: 881 FPNPAVAEAYLKPVVDESRGSFTWGKPDVEQIREYSLTFCTFCQDHFGWTRTKVDEILSP 940
Query: 289 KIAERDLRRFANLRANTL 306
I + +L++ LR ++
Sbjct: 941 VIKQLNLQQ-TQLRIDSF 957
>gi|195030390|ref|XP_001988051.1| GH10954 [Drosophila grimshawi]
gi|193904051|gb|EDW02918.1| GH10954 [Drosophila grimshawi]
Length = 1183
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 130/282 (46%), Gaps = 50/282 (17%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN + +G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 802 FGIPYIVAPMEAEAQCAFLNAVEITNGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRA 860
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV---------------- 175
+ IE+ R+ LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 861 EQIEQTFNCNRSKLIQLACLVGSDYTTGIHGIGAVTALEILASFTTSKLDSATTSLDTAS 920
Query: 176 -GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCN-------NKEESLNQEI-NVNGTDHS 226
G + Q + S + F ++ W + N SL +++ N+N
Sbjct: 921 NGSAITNQSVLSTLVKF--------RDWWQSQHNANIPVGSTARISLRKKLKNIN----- 967
Query: 227 LQRETPFSQVIDAYSNPKC-YSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEY 285
L P S V++AY PK + D+ + + + + AR +FF W KTD+
Sbjct: 968 LHEGFPSSSVVEAYLTPKVDETRDAFSWGSPDVESIREFAR------KFFGWTTSKTDDI 1021
Query: 286 ILP---KIAERDLR-RFANLRANTLALGVDLPLQKVPVKCPI 323
++P KI E+ ++ N AL V P+ V+ I
Sbjct: 1022 LMPVMKKINEKKIQGSIRNYFTAKSALRVQQPMVSKRVQTAI 1063
>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
Length = 1126
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 32/253 (12%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 782 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFG 841
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 842 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 900
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 224
I+ D L+ ++ WS + NK ++ N T
Sbjct: 901 ILTEFSD---LEEF---------------RDWWSEIQLGNKIPDDIHAGFRKKFKKNVTK 942
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 284
L P V AY P+ SE + + Q W PE+TDE
Sbjct: 943 LFLPPGFPDKAVEKAYLEPEVDPDPSE-----FKWGVPDLDAVRQFLMTTIGWSPERTDE 997
Query: 285 YILPKIAERDLRR 297
++P I RD+ R
Sbjct: 998 VLVPVI--RDVNR 1008
>gi|402083876|gb|EJT78894.1| DNA-repair protein rad13 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
M+ E + L G+P + EAEAQCA L L DG + DSD FLFG VY++++
Sbjct: 892 VMVAECQQLLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFGGTRVYKNMF 951
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
G + +V CY D+E L GR LI LA LLGSDY++G+ G+GP +A +I+
Sbjct: 952 NGNK-FVECYLSSDLEGDLSLGRPQLIALAQLLGSDYTEGLPGIGPVTAVEIL 1003
>gi|452987544|gb|EME87299.1| hypothetical protein MYCFIDRAFT_147956 [Pseudocercospora fijiensis
CIRAD86]
Length = 1298
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 120/264 (45%), Gaps = 29/264 (10%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI+E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 928 RRDADEVTQTMIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFG 987
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI++A LLGSDY++G+ G+G +A +
Sbjct: 988 GTRVYKNMF-NQAKFVECYLTSDLEKEFDLTREKLISIAQLLGSDYTEGLHGVGAVTALE 1046
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ D L K+ + K ++E ++ N L
Sbjct: 1047 IISEFPD-----------LEAFKQWWTGVQTAVIPKSADQEHPFRRKFRKNAKKLFLPPS 1095
Query: 231 TPFSQVIDAY------SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 284
P ++V AY SNP+ + V + A F A + W E+TDE
Sbjct: 1096 FPDARVAMAYLKPEVDSNPEAFQF---GVPDLDALRSFLMATIG--------WTQERTDE 1144
Query: 285 YILPKIAERDLRRFANLRANTLAL 308
++P I + + R ++N A
Sbjct: 1145 VLVPVIKDMNRRLDEGTQSNITAF 1168
>gi|158299596|ref|XP_319693.4| AGAP008939-PA [Anopheles gambiae str. PEST]
gi|157013593|gb|EAA14799.5| AGAP008939-PA [Anopheles gambiae str. PEST]
Length = 1256
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 8/226 (3%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP + EAEAQCA LN + DG + DSDI+LFG + VY++ + ++ V+ + +
Sbjct: 901 FGVPFIVAPMEAEAQCAFLNQLDMTDGTITDDSDIWLFGGKKVYKN-FFNQQKLVLEFTI 959
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
+ IE+ R LI LALL+GSDY+ G+ G+G +A +I+ S SE +S
Sbjct: 960 EGIEQMFQMDRKKLIQLALLVGSDYTTGIHGIGAVTALEILASFPPTPEQPGETSEMMSM 1019
Query: 192 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE 251
+ + K W N + + + P + V++AY P ++ E
Sbjct: 1020 LSGLR--KFRDWWHHGRNGATGTRISLKSKLKNIEIGEGFPSTGVVEAYLQPTVDCSEEE 1077
Query: 252 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
RL Q F W KT++ +LP + D R+
Sbjct: 1078 -----FTWGYPDADRLRDYARQKFGWSQTKTNDILLPVLKRLDERK 1118
>gi|154280855|ref|XP_001541240.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
gi|150411419|gb|EDN06807.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
Length = 1111
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG VY++++
Sbjct: 777 IMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF 836
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ +V CY +D+E++ RN LI A LLGSDY++G+ G+GP SA +I+
Sbjct: 837 -NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEIL 888
>gi|238484915|ref|XP_002373696.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
gi|220701746|gb|EED58084.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
Length = 1135
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 115/258 (44%), Gaps = 18/258 (6%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 796 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFG 855
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 856 GTRVYKNMF-NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ + L + + G + + + + ++ + L
Sbjct: 915 ILTEFSN-----------LEEFRDWWTQVQMGMNL-SDGEHAAFYKKFRKQASKIFLSPS 962
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P SQV AY P+ S S V H L W E+TDE ++P I
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMATIGWSQERTDEVLVPVI 1017
Query: 291 AERDLRRFANLRANTLAL 308
+ + R ++N A
Sbjct: 1018 RDMNRREQEGTQSNITAF 1035
>gi|344246628|gb|EGW02732.1| Flap endonuclease GEN-like 1 [Cricetulus griseus]
Length = 317
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+ VY
Sbjct: 108 SHFKSVLRECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQMVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLR 227
Query: 174 SVGDNVVLQRI 184
+ +LQR
Sbjct: 228 ILKGQSLLQRF 238
>gi|391332092|ref|XP_003740472.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Metaseiulus occidentalis]
Length = 957
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
++++ ++R + M ++ + L G+P + EAEAQCA L L G + DS
Sbjct: 673 NEINRIQRQTSEITASMAEDCEELLKMFGIPVVRAPREAEAQCAALEQAGLVQGVVTDDS 732
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
DIFLFG VY++++ + Y IE L R LI A+L GSDY+ G+ +G
Sbjct: 733 DIFLFGGNVVYKNLF-SQDHQCEMYAAKTIESNLKLSREDLIGFAMLTGSDYTNGIENVG 791
Query: 165 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 224
P AC+I+ G S +K KK WS N I
Sbjct: 792 PVMACEIIAEF----------RSGKSVLKTLTEFKK-WWSLAQRGAALPKNS-IRTRFIK 839
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPP 279
L P V AY +P V RV + F +R L A+ F WP
Sbjct: 840 LVLDDRFPSEAVHSAYCHP--------TVERV--KEKFSWSRPNLDLLRGFTAKKFNWPQ 889
Query: 280 EKTDEYILP 288
+KTD Y+LP
Sbjct: 890 DKTDGYLLP 898
>gi|358390983|gb|EHK40388.1| hypothetical protein TRIATDRAFT_41742 [Trichoderma atroviride IMI
206040]
Length = 1172
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L ++ DG + DSD FLFG
Sbjct: 867 RRDADEVTQTMITECQALLRLFGIPYITAPMEAEAQCAELVRLNMVDGIVTDDSDTFLFG 926
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D++++L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 927 GTRVYKNMFNSNK-FVECYVGADLDKELSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 985
Query: 171 IV 172
I+
Sbjct: 986 IL 987
>gi|198423155|ref|XP_002121987.1| PREDICTED: similar to Excision repair cross-complementing rodent
repair deficiency, complementation group 5 [Ciona
intestinalis]
Length = 948
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 25/231 (10%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + +EAEAQCA L++ L G + DSD++LFG + VY+D++ +R CY +
Sbjct: 634 FGIPFVLSPQEAEAQCAFLDMNDLTMGTITEDSDVWLFGGKNVYKDMFDRKRD-PTCYSL 692
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGL-S 190
DI+ +LG R+ I +AL GSDY++G+ G+GP A +I+K EG+ S
Sbjct: 693 LDIQAELGLLRSHFINIALCSGSDYTEGLEGVGPVRALEIMK---------EFPGEGMES 743
Query: 191 FVKRAKNSKKEGW-SFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD 249
VK K+ W K + +I ++ + P V++AY P+ +
Sbjct: 744 LVKF-----KQWWDDAHAQVKPPTSEAKIKTELRRLNVPQNFPSKLVVEAYLKPRVNESK 798
Query: 250 SEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAERDLRR 297
+ V + + + + W K DE +LP K AER R+
Sbjct: 799 DKFVW-----GMPDLSGIRDYLTERLHWTRNKIDEELLPVLKKSAERATRK 844
>gi|8570440|gb|AAF76467.1|AC020622_1 Contains similarity to excision repair protein ERCC5 from Homo
sapiens gi|1082359 and contains XPG N-terminal PF|00752
and XPG I-region PF|00867 domains [Arabidopsis thaliana]
Length = 497
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
FS ++E L LG+P L+ EAEA CA LN + D C + DSD FLFGA V +D
Sbjct: 116 FSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKD 175
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 176
I R CY M IE LG R LI ++LL+G+DY S GV G+G + A +IV+
Sbjct: 176 IKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFS 235
Query: 177 DNVVLQRIASEG 188
++ VL+R+ G
Sbjct: 236 EDQVLERLQDIG 247
>gi|307206657|gb|EFN84629.1| DNA-repair protein complementing XP-G cells [Harpegnathos saltator]
Length = 1139
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 45 DKMSSLRRNMG------SEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 97
D+ L RN+G + S I+ EA+ L G+P + EAEAQCA L L D
Sbjct: 741 DEQEELTRNIGKLERQATNISEQIRIEAQELLRLFGIPYVVAPMEAEAQCAYLEQIKLTD 800
Query: 98 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
G + DSDI+LFG R VY++ + + V + DI+ RN LI LALL+GSDY+
Sbjct: 801 GTITDDSDIWLFGGRCVYKNFFNNSK-RVQQFRACDIQHHFKLTRNQLIQLALLVGSDYT 859
Query: 158 QGVRGLGPESACQIVKSV---GDNVV 180
GV G+GP +A +I+ + GDNV+
Sbjct: 860 TGVAGIGPVTALEILAAFPAEGDNVL 885
>gi|358387657|gb|EHK25251.1| hypothetical protein TRIVIDRAFT_208179 [Trichoderma virens Gv29-8]
Length = 1196
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 13/254 (5%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E +AL G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 889 RRDADEVTQTMITECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFG 948
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+++++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 949 GTRVYKNMFNSNK-FVECYVGADLDKEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 1007
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ L++ E V+ K+ S K T L
Sbjct: 1008 ILSEFPGKDGLEKF-REWWKEVQSQTRPKEADASSSFRRKFR------KAQATKLFLPLG 1060
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P V +AY +P S+ + + A L + W E+TDE ++P I
Sbjct: 1061 FPSPAVFEAYLHPMVDSSTEQ-----FQWGVPDVAGLREYLMATIGWSKERTDEVLVPVI 1115
Query: 291 AERDLRRFANLRAN 304
+ + R ++N
Sbjct: 1116 RDMNKREIEGTQSN 1129
>gi|70991587|ref|XP_750642.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
gi|66848275|gb|EAL88604.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
Length = 1130
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 789 RRDADEVTQVMITECQQLLSLFGLPYIIAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 848
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 849 GTRVYKNMF-NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALE 907
Query: 171 IV 172
I+
Sbjct: 908 IL 909
>gi|358340619|dbj|GAA29362.2| flap endonuclease GEN homolog 1 [Clonorchis sinensis]
Length = 612
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 152/348 (43%), Gaps = 49/348 (14%)
Query: 15 LNGSIPAIKLSTYRRRLNS---GSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLS 71
L+G P++K +T RL + E++ D L K L + G E + L +
Sbjct: 74 LDGVAPSLKATTIANRLCTQRRNIELSIDPAVLVKRRRLSKISG--------ECRTLLQA 125
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCYE 130
LGVPC++ EAEA CALLN D C ++D D FL+GA TVYR + R V Y
Sbjct: 126 LGVPCVQSPGEAEAMCALLNSSKRVDACITNDGDAFLYGATTVYRHFTMNSRDPSVYVYR 185
Query: 131 MDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGL 189
I ++L R L+ L+++LG DY G G+G ++V S L+ + SE L
Sbjct: 186 SSRIYKELSLDRFLLVFLSIVLGCDYWPTGTVGIGQAGIQRLVSS------LRCLTSEKL 239
Query: 190 SFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKC---- 245
+ N K G + ++ E + + D L R ++++ID + +C
Sbjct: 240 ---RDLLNWIKTG---RQVSQTEVVEAHSFLRNLDPKLLRL--WTKIIDTFQ--QCPVDE 289
Query: 246 ----YSADSEAVHRVLAQHLFQHARLH-------QVCAQFFQWPPEKTDEYILPKIAERD 294
+ A++E L F L C+ W P+ + ++LP +A D
Sbjct: 290 ILAEFLANAEERMWSLPSSEFVSTWLRPNPRALVAFCSTHLDWDPDYSLHHLLPVLAMWD 349
Query: 295 LRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSW 342
+R +A +D + +P K I+K R + CFEV W
Sbjct: 350 MRHPRLGALIPMAHSIDDAVTLIPRK-----IVKRRTVNFIPCFEVEW 392
>gi|397601505|gb|EJK57927.1| hypothetical protein THAOC_21987, partial [Thalassiosira oceanica]
Length = 268
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P +E EAEAQCA L L DG + DSDIF+FG + VY++ E+ +V Y
Sbjct: 3 GIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNF-FDEQKFVEAYYAR 61
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFV 192
DIER+LG ++ L+ LA+LLG DY+ GVRG+G + +++++ A++G+ V
Sbjct: 62 DIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAF-------PPAADGVEGV 114
Query: 193 KRAKNSKKEGWSFKCNN--KEESLNQEINVNGTDHSLQR------ETPFSQVIDAYSNPK 244
S+ W N+ +++ E+ +G S + + P +I AY P
Sbjct: 115 -HGGLSRFRDWMDGINDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYLKP- 172
Query: 245 CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
+ D+ A+ L + CA W E+T + P
Sbjct: 173 --AVDTSGTRFTWARPDLDA--LQRFCADSLGWEREETARVVGP 212
>gi|355754793|gb|EHH58694.1| hypothetical protein EGM_08605, partial [Macaca fascicularis]
Length = 1000
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 113/250 (45%), Gaps = 33/250 (13%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 771 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 830 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 880
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 881 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 930
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV------------CAQFFQWPPEKTDEYIL 287
NP A V L+ L ++ ++F W KTDE +
Sbjct: 931 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREYPLLLKREGNTLRYFGWNRTKTDESLF 990
Query: 288 PKIAERDLRR 297
P + + D ++
Sbjct: 991 PVLKQLDAQQ 1000
>gi|238579680|ref|XP_002389137.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
gi|215451076|gb|EEB90067.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
Length = 391
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 22/224 (9%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA+L L DG + DSD+F+FG + VY+++ + V C+ +
Sbjct: 6 FGIPYITAPMEAEAQCAVLVSLGLVDGIITDDSDVFVFGGQRVYKNM-FNQSKTVECFLL 64
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
D+ R+LG + +LI LA LLGSDY +G+ G+GP A +++K L + +
Sbjct: 65 SDLSRELGLDQGTLIRLAYLLGSDYVEGLPGVGPVVAMELLKEFPGEDGLHKFKD---WW 121
Query: 192 VKRAKNSKKEG-----WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCY 246
K KE W+ K + E+ D L E P S V DAY +P
Sbjct: 122 TKVQTGRDKEDHIAWLWTHKYLSSEDKTK--------DLYLPPEWPNSAVRDAYYHPTVD 173
Query: 247 SADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
+D L L + + W K D+ +LP I
Sbjct: 174 ESDEP-----FKWGLPDLDALREFLREELGWGQSKVDDLLLPII 212
>gi|225682262|gb|EEH20546.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb03]
Length = 1233
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 20/247 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 892 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFG 951
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 952 GTRVYKNMF-NQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 1010
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ + S+ K S W ++ N T L
Sbjct: 1011 ILTEFSTLEDFRDWWSQVQMGAKLPDGSHSAFW------------KKFKKNATKLFLPPG 1058
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P S+V AY P+ S S + L Q W E+TDE ++P I
Sbjct: 1059 FPDSRVDTAYLEPEVDSDPS-----AFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVI 1113
Query: 291 AERDLRR 297
RD+ R
Sbjct: 1114 --RDMNR 1118
>gi|115390695|ref|XP_001212852.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
gi|114193776|gb|EAU35476.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
Length = 1131
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 816 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 875
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 876 GTRVYKNMF-NQSKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGVGPVTALE 934
Query: 171 IV 172
I+
Sbjct: 935 IL 936
>gi|390600384|gb|EIN09779.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 1103
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L DG + DSD+FLFG + V ++++ + V C+ +
Sbjct: 738 FGIPYITAPMEAEAQCATLNELGLVDGIITDDSDVFLFGGKRVLKNMF-NQSKTVECFLL 796
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
D+ R+LG R++LI LA LLGSDY++G+ G+GP A +++K
Sbjct: 797 PDLARELGLDRDTLIRLAYLLGSDYTEGLPGVGPVVAMELLK 838
>gi|226289636|gb|EEH45120.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb18]
Length = 1178
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 20/247 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 837 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFG 896
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 897 GTRVYKNMF-NQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 955
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ + S+ K S W ++ N T L
Sbjct: 956 ILTEFSTLEDFRDWWSQVQMGAKLPDGSHSAFW------------KKFKKNATKLFLPPG 1003
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P S+V AY P+ S S + L Q W E+TDE ++P I
Sbjct: 1004 FPDSRVDTAYLEPEVDSDPS-----AFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVI 1058
Query: 291 AERDLRR 297
RD+ R
Sbjct: 1059 --RDMNR 1063
>gi|242000896|ref|XP_002435091.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
gi|215498421|gb|EEC07915.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
Length = 868
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ E + L G+P + EAEAQCA L + L G + DSD +LFGARTVYR ++
Sbjct: 644 LVMECQELLRMFGLPFVVSPGEAEAQCAWLEEQGLTQGTVTDDSDAWLFGARTVYRHLFA 703
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+R V Y + D+ +LG R L+ ALL GSDY+ GV G+GP +A +++
Sbjct: 704 SDRRPSV-YRLQDLATQLGLNRQKLVAFALLCGSDYTAGVSGVGPITAMEVLSEFSGEDA 762
Query: 181 LQRIASEGLSFVKRAKNSK 199
LQ + ++++RAK K
Sbjct: 763 LQ-LLENFRTWLERAKREK 780
>gi|356532054|ref|XP_003534589.1| PREDICTED: flap endonuclease GEN-like 1-like [Glycine max]
Length = 607
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
FS ++E L LG+P L+ EAEA CA LN E D C ++DSD FLFGA+ + +
Sbjct: 117 FSSHVQECAELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKC 176
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVG 176
+ CY M DIE LG R LI ++LL+G D+ GVRG+G ++A VK+
Sbjct: 177 FCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGDDHDINGVRGIGLDTALHFVKAFS 236
Query: 177 DNVVLQRIASEG 188
++ +L R+ G
Sbjct: 237 EDDILNRLHEIG 248
>gi|355701088|gb|EHH29109.1| hypothetical protein EGK_09444 [Macaca mulatta]
Length = 1194
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 111/247 (44%), Gaps = 33/247 (13%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 771 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 830 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 880
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 881 LNEFPGHGLEPLLKF----SEWWH------EAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 930
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV------------CAQFFQWPPEKTDEYIL 287
NP A V L+ L ++ ++F W KTDE +
Sbjct: 931 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREYPLLLKREGNTLRYFGWNRTKTDESLF 990
Query: 288 PKIAERD 294
P + + D
Sbjct: 991 PVLKQLD 997
>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1222
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 118/256 (46%), Gaps = 20/256 (7%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 109
RR+ MI E + L G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 929 RRDADEVTQTMIAECQQLLTLFGLPYITAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 987
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G VY++++ + +V CY D+ + R +I +A LLGSDY+ G+ G+GP +A
Sbjct: 988 GGTRVYKNMFNAAK-FVECYLAQDLTSEFNLTREKMIDIAQLLGSDYTTGIPGIGPVTAL 1046
Query: 170 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQ 228
+I+ + L + + + G K + + ++ N GT L
Sbjct: 1047 EILSEF-----------QTLEAFRTWWDGVQSGQIKKDEDAKNPFRKKFRKNQGTKLFLP 1095
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
P +V DAY +P+ S D E + A L + W E+TDE ++P
Sbjct: 1096 PNFPDPRVTDAYLHPEVDS-DPEPFQWGVP----DLAALRTFLSSQIGWSWERTDEVLVP 1150
Query: 289 KIAERDLRRFANLRAN 304
I + + R +AN
Sbjct: 1151 VIRDMNRREKEGTQAN 1166
>gi|323456781|gb|EGB12647.1| hypothetical protein AURANDRAFT_4733, partial [Aureococcus
anophagefferens]
Length = 238
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 12/167 (7%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG-------SEFSCMIKEAKA 67
+G +P +K R+R E +DD+ + +SLRR M S M ++
Sbjct: 76 FDGGVPVVKARLIRQR-QMRREKNRDDR---EAASLRREMSRSSRDADSVTEDMREDTMH 131
Query: 68 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV 127
L LGVP + EAEAQCA L LC+G + DSD F FGAR VY++I+ +R YV
Sbjct: 132 LLRLLGVPYVVAPMEAEAQCAALEAAGLCEGVVTDDSDAFCFGARRVYKNIF-DDRKYVE 190
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
Y D R L GR+ LALLLG DY GV G+G +A +++++
Sbjct: 191 AYYASDCARDLRLGRDEFCALALLLGGDYDNGVAGVGVVNAMEVLQA 237
>gi|303607|dbj|BAA03812.1| ERCC5 [Homo sapiens]
Length = 1185
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAVLDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY+ G G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-GNTNCGLCTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 877 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 927 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKISEFCQRYFGWNRTKTDESLFPVLKQLDAQ 986
Query: 297 R 297
+
Sbjct: 987 Q 987
>gi|400603046|gb|EJP70644.1| DNA excision repair protein [Beauveria bassiana ARSEF 2860]
Length = 1154
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 35/257 (13%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E ++L G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 857 RRDADEVTQVMVSECQSLLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFG 916
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY +++E+ L R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 917 GTRVYKNMFNSNK-FVECYLGNELEKDLSLSRQQLIALAHLLGSDYTEGLPGVGPVTAVE 975
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI-NVNGTDHSLQR 229
I+ +GL+ + + + K + + ++ L
Sbjct: 976 IISEFP--------GKDGLARFREWWDEVQVQSRPKAADADSPFRKKFRRTQAAKLFLPP 1027
Query: 230 ETPFSQVIDAYSNPKCYSA---------DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPE 280
P S V DAY +P+ + D E + R L + W E
Sbjct: 1028 GFPNSAVDDAYLHPQVDDSAEPFQWGVPDVEGLRRFLMATI--------------GWTKE 1073
Query: 281 KTDEYILPKIAERDLRR 297
+TDE ++P I RD+ R
Sbjct: 1074 RTDEVLVPVI--RDMNR 1088
>gi|378725893|gb|EHY52352.1| DNA excision repair protein ERCC-5 [Exophiala dermatitidis
NIH/UT8656]
Length = 1319
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M++E +AL G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 979 RRDADDVTQVMVQECQALLRLFGLPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFG 1038
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 1039 GTRIYKNMFNAAK-FVECYLASDLEKEFLLDRRRLISFAHLLGSDYTEGIPGIGPVTALE 1097
Query: 171 IV 172
I+
Sbjct: 1098 IL 1099
>gi|1389577|dbj|BAA03813.1| ERCC5 [Mus musculus]
Length = 1170
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 288
NP A V L+ ++ + ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFXQRYFGWNRMKTDESLYP 978
>gi|346973852|gb|EGY17304.1| DNA-repair protein rad13 [Verticillium dahliae VdLs.17]
Length = 1187
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 877 RRDADEVTQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 936
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + V CY D++++L R L+++ALLLGSDY+ G+ G+GP +A +
Sbjct: 937 GTRVYKNMFNSNK-LVECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVE 995
Query: 171 IV 172
I+
Sbjct: 996 IL 997
>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
Length = 1066
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 116/256 (45%), Gaps = 38/256 (14%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 687 RRDADEVSHIMVTECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFG 746
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 747 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 805
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 224
I+ L+ ++ WS + NK + ++ N T
Sbjct: 806 ILTEFSS---LEEF---------------RDWWSQVQLGNKIPDDTHAAFRKKFKKNLTK 847
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 281
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 848 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATIG--------WSPER 899
Query: 282 TDEYILPKIAERDLRR 297
TDE ++P I RD+ R
Sbjct: 900 TDEVLVPVI--RDVNR 913
>gi|390340292|ref|XP_791943.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Strongylocentrotus purpuratus]
Length = 1373
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
M ++K + G+P +E +EAEAQCA L+L + +G + D DI+LFG R V+R +
Sbjct: 854 TMYADSKEMLQCFGIPYIESPQEAEAQCAFLDLTNQAEGTITDDGDIWLFGGRRVFRH-F 912
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
++ + + DIER L R LI LA L+GSDY+ G++G+G SVG
Sbjct: 913 FSKKKDPEYFRVGDIERHLLLDRKKLINLAYLVGSDYTLGIQGIG---------SVGAME 963
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
+L GL +K K+ WS + SLN L E P + A
Sbjct: 964 ILAEFKGHGLKTLKDFKS----WWSRTQDQGVPSLNA-TRSKWCKLVLPDEFPNPLIAKA 1018
Query: 240 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
Y+NP ++ L L + + F W K DE +LP
Sbjct: 1019 YTNPAIDESE-----EGFQWGLPDLGLLREFARERFGWMKTKLDEQLLP 1062
>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
Length = 1119
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 780 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFG 839
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 840 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 898
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 224
I+ GL ++ WS + NK ++ N T
Sbjct: 899 ILTEFS-----------GLEEF-------RDWWSQVQLGNKIPDDPHARFRKKFKKNITK 940
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 281
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 941 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVG--------WSPER 992
Query: 282 TDEYILPKIAERDLRRFANLRANTLAL 308
TDE ++P I + + R ++N
Sbjct: 993 TDEVLVPVIRDANRREQEGTQSNITGF 1019
>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 1119
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 780 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFG 839
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 840 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 898
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 224
I+ GL ++ WS + NK ++ N T
Sbjct: 899 ILTEFS-----------GLEEF-------RDWWSQVQLGNKIPDDPHARFRKKFKKNITK 940
Query: 225 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 281
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 941 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVG--------WSPER 992
Query: 282 TDEYILPKIAERDLRRFANLRANTLAL 308
TDE ++P I + + R ++N
Sbjct: 993 TDEVLVPVIRDANRREQEGTQSNITGF 1019
>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
Length = 1209
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 863 RRDADEVTQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 922
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + V CY D++++L R L+++ALLLGSDY+ G+ G+GP +A +
Sbjct: 923 GTRVYKNMFNSNK-LVECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVE 981
Query: 171 IV 172
I+
Sbjct: 982 IL 983
>gi|320586182|gb|EFW98861.1| DNA excision repair protein rad2 [Grosmannia clavigera kw1407]
Length = 1287
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 114/253 (45%), Gaps = 27/253 (10%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQC+ L L DG + DSD FLFG
Sbjct: 896 RRDADEVTMVMVSECQALLRLFGIPYITAPMEAEAQCSELVSLGLVDGIVTDDSDTFLFG 955
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ G + +V C+ D+E+++ R LI+LA LLGSDY+ G+ G+GP +A +
Sbjct: 956 GTRVYKNMFNGNK-FVECFLAADLEKEMSLSREKLISLAQLLGSDYTDGLPGVGPVTAME 1014
Query: 171 IVKSVGDNVVLQRIASEGL-SFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
I+ +GL F + + G S + + + GT L
Sbjct: 1015 ILSEF--------PGPQGLEEFRTWWDDVQMHGRSREADAGSPFRRKFRKSQGTKLFLPT 1066
Query: 230 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDE 284
P + V AY P+ S + FQ L W ++TDE
Sbjct: 1067 GFPNAAVAAAYKKPEVDS----------STEPFQWGVPDLDGLRSFLMSTIGWSQDRTDE 1116
Query: 285 YILPKIAERDLRR 297
++P I RD+ R
Sbjct: 1117 VLVPVI--RDMNR 1127
>gi|168010775|ref|XP_001758079.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690535|gb|EDQ76901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1718
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Query: 52 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 111
RN S S M E + L G+P + EAEAQCA L+ E L DG + D D+FLFG
Sbjct: 1037 RNADSVTSEMFAECQELLQMFGLPYVIAPMEAEAQCAFLDAEKLVDGVVTDDVDVFLFGG 1096
Query: 112 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
R VY++I+ +R YV Y M D+E +LG R+ LI +ALLLGSDY++GV G+G +A ++
Sbjct: 1097 RNVYKNIF-DDRKYVETYYMKDVETELGLDRDKLIRMALLLGSDYTEGVSGIGIVNAIEV 1155
Query: 172 VKS 174
V +
Sbjct: 1156 VNA 1158
>gi|397639140|gb|EJK73406.1| hypothetical protein THAOC_04971, partial [Thalassiosira oceanica]
Length = 269
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 32/232 (13%)
Query: 70 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCY 129
L G+P +E EAEAQCA L L DG + DSDIF+FG + VY++ E+ +V Y
Sbjct: 1 LVPGIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNF-FDEQKFVEAY 59
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGL 189
DIER+LG ++ L+ LA+LLG DY+ GVRG+G + +++++ A++G+
Sbjct: 60 YARDIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAF-------PPAADGV 112
Query: 190 SFVKRAKNSKKEGWSFKCNN--KEESLNQEINVNGTDHSLQR------ETPFSQVIDAYS 241
V S+ W + +++ E+ +G S + + P +I AY
Sbjct: 113 EGV-HGGLSRFRDWMDGIGDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYL 171
Query: 242 NPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 288
P ++ + F AR L + CA W E+T + P
Sbjct: 172 RPAVDTSGTR----------FTWARPDLDALQRFCADALGWEREETARVVGP 213
>gi|336370553|gb|EGN98893.1| hypothetical protein SERLA73DRAFT_108084 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1055
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 15/239 (6%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + L G+P + EAEAQCA L L DG + DSD+FLFG + V+++++
Sbjct: 743 MISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNMF- 801
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V C+ + D+ R+LG R +LI LA LLGSDY +G+ G+GP A +++K
Sbjct: 802 NQSKTVECFLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKEFPGEDG 861
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L + L V+ ++ +E S ++ D L +E P + V DAY
Sbjct: 862 LHKFKDWWLK-VQSGRDKDEENKSKFRKRFKKKY--------KDLYLPQEWPNAAVRDAY 912
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFA 299
+P S++ L L + W K D+ +LP I + + R+ A
Sbjct: 913 YHPTVDSSEEP-----FKWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKRKQA 966
>gi|405975699|gb|EKC40248.1| DNA repair protein complementing XP-G cells-like protein
[Crassostrea gigas]
Length = 1005
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 108/230 (46%), Gaps = 23/230 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M EA+ L GVP + EAEAQCA L+ +L +G + DSDI+LFG R VY++ +
Sbjct: 637 MYLEAQDLLKLFGVPFVLSPTEAEAQCAWLDSANLTNGTITDDSDIWLFGGRRVYKNFFN 696
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS--VGDN 178
+R V + D I+ +LG R I +ALL GSDY+ G+ G+GP +A +I+ D
Sbjct: 697 QDR-TVELFMNDSIQSQLGLNREIFINMALLCGSDYTDGIPGVGPVTAMEILSEFPAADL 755
Query: 179 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 238
LQ S K +N K K +K L E++ DH +++D
Sbjct: 756 SALQAFKSWWEETQKHKRNPKIS----KIRSKLRQL--EVSEGFPDH---------RIVD 800
Query: 239 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
AY P + EA L L + + W KTDE +LP
Sbjct: 801 AYLKPTVDDS-KEAFSWALPDLDL----LREYAKEKLGWAQVKTDEVLLP 845
>gi|358060342|dbj|GAA93747.1| hypothetical protein E5Q_00393 [Mixia osmundae IAM 14324]
Length = 1209
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 122/283 (43%), Gaps = 40/283 (14%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RRN M KE + + G+P ++ EAEAQCA L + L DG + DSD+FLFG
Sbjct: 809 RRNADEITQQMAKEIRVMLRLFGIPYVDAPMEAEAQCAQLWMAGLVDGIITDDSDVFLFG 868
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
V+++++ + YV C+ + DIER+L R+ L LA LGSDY +G+ +GP +
Sbjct: 869 GGRVFKNMF-NQNKYVECFLLSDIERELSLDRDKLCKLAYFLGSDYVEGLPKVGPVLGME 927
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEE-------SLNQEINVNGT 223
+++ GL +R W K ++ + + +
Sbjct: 928 LMREFP--------GPAGLVEFRR--------WWIKVQKGQDGEADLRTAFRRRFKKSMK 971
Query: 224 DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTD 283
L P V+DAY NP D E L L W K +
Sbjct: 972 TLVLDESWPNPAVMDAYLNP-----DVETSSERFTWGLPDLDGLRHFLMDSLGWAAPKVE 1026
Query: 284 EYILP---KIAERDLRRFANLRAN-------TLALGVDLPLQK 316
+ +LP ++++R+ R AN++ + T +G + LQK
Sbjct: 1027 DLLLPLIKRMSDRN-RGIANMQGSLERYFDVTGGMGQNARLQK 1068
>gi|303310363|ref|XP_003065194.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240104854|gb|EER23049.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
delta SOWgp]
Length = 1143
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 18/254 (7%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 806 RRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFG 865
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 866 GTRIYKNMF-NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 924
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ GL + + + G + ++ ++ N L
Sbjct: 925 ILTEF-----------PGLEEFRDWWSKVQMGVTI-SDDTHSKFRKKFKKNAAKLFLPPA 972
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY P+ D A + L Q W E+TDE ++P I
Sbjct: 973 FPDKRVDIAYLEPEV-DPDPSAFQWGVP----DLEALRQFLMSTVGWSSERTDEVLVPVI 1027
Query: 291 AERDLRRFANLRAN 304
+ + R +AN
Sbjct: 1028 RDVNRRELEGTQAN 1041
>gi|320033898|gb|EFW15844.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
Length = 1143
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 18/254 (7%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 806 RRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFG 865
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 866 GTRIYKNMF-NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 924
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ GL + + + G + ++ ++ N L
Sbjct: 925 ILTEF-----------PGLEEFRDWWSKVQMGVTI-SDDTHSKFRKKFKKNAAKLFLPPA 972
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P +V AY P+ D A + L Q W E+TDE ++P I
Sbjct: 973 FPDKRVDIAYLEPEV-DPDPSAFQWGVP----DLEALRQFLMSTVGWSSERTDEVLVPVI 1027
Query: 291 AERDLRRFANLRAN 304
+ + R +AN
Sbjct: 1028 RDVNRRELEGTQAN 1041
>gi|393220967|gb|EJD06452.1| PIN domain-like protein, partial [Fomitiporia mediterranea MF3/22]
Length = 1250
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MI + + G+P + EAEAQCA L L DG + DSD+FLFGA+ VY++++
Sbjct: 818 AMIAQIMTMLRLFGIPYITAPMEAEAQCAALVDLGLVDGVITDDSDVFLFGAKRVYKNMF 877
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDN 178
+ V C+ + D+ R+LG R +LI LA LLGSDY+ G+ G+GP A ++++ GD+
Sbjct: 878 -NQSKTVECFLLTDLARELGLDRGTLIRLAYLLGSDYTLGLPGVGPVVAMELLQEFPGDD 936
>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
Length = 1293
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 117/256 (45%), Gaps = 20/256 (7%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 109
RR+ MI E + L G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 931 RRDADEVTQTMIAECQQLLTLFGLPYVTAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 989
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G VY++++ + +V CY D+ + R +I +A LLGSDY+ G+ G+GP +A
Sbjct: 990 GGTRVYKNMFNAAK-FVECYLAQDLASEFSLTREKMIAIAQLLGSDYTTGIPGIGPVTAL 1048
Query: 170 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQ 228
+I+ + L + + + G K + + + N GT L
Sbjct: 1049 EILSEF-----------QTLEAFRAWWDGVQSGQIRKDEDAKNPFRKRFRKNQGTKLFLP 1097
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 288
P +V +AY +P+ S D E + A L + W EKTDE ++P
Sbjct: 1098 PNFPDPRVAEAYLHPEVDS-DPEPFQWGVP----DLASLRTFLSSQIGWSWEKTDEVLVP 1152
Query: 289 KIAERDLRRFANLRAN 304
I + + R +AN
Sbjct: 1153 VIRDMNRREKEGTQAN 1168
>gi|196004776|ref|XP_002112255.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
gi|190586154|gb|EDV26222.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
Length = 247
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLG 73
+G +P +K T + ++ + + +L + + M + S M E + L G
Sbjct: 76 FDGGVPLLKKQTISKLVDVQRSLEEQQTSLIQEHKRQERMAASVSNEMYSECQELLSLFG 135
Query: 74 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD 133
+P + EAEAQCA+L+ + DG + DSDIFLFG R +YR ++ E Y+
Sbjct: 136 IPYIVSPMEAEAQCAVLDFTNQTDGTITDDSDIFLFGGRNIYRYVF-RESKLAEFYDSQR 194
Query: 134 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV-LQRI 184
I+R +G R +ITLA LLGSDY+ G++ +G A +++ + GD++ LQ+I
Sbjct: 195 IQRLMGLDRKKMITLAYLLGSDYTDGIKNVGIVMAMELLSTFGDDLTGLQKI 246
>gi|218192294|gb|EEC74721.1| hypothetical protein OsI_10446 [Oryza sativa Indica Group]
Length = 1487
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 854 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 913
Query: 119 WLGERGYVVCYEM----------------------DDIERKLGFGRNSLITLALLLGSDY 156
+ +R YV Y M DIE +LG R LI +A+LLGSDY
Sbjct: 914 F-DDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY 972
Query: 157 SQGVRGLGPESACQIVKSVGDNVVLQRI 184
++G+ G+G +A ++ + + LQ+
Sbjct: 973 TEGISGIGIVNAIEVAHAFPEEDGLQKF 1000
>gi|222624409|gb|EEE58541.1| hypothetical protein OsJ_09837 [Oryza sativa Japonica Group]
Length = 1494
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 861 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 920
Query: 119 WLGERGYVVCYEM----------------------DDIERKLGFGRNSLITLALLLGSDY 156
+ +R YV Y M DIE +LG R LI +A+LLGSDY
Sbjct: 921 F-DDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY 979
Query: 157 SQGVRGLGPESACQIVKSVGDNVVLQRI 184
++G+ G+G +A ++ + + LQ+
Sbjct: 980 TEGISGIGIVNAIEVAHAFPEEDGLQKF 1007
>gi|444731111|gb|ELW71474.1| DNA repair protein complementing XP-G cells [Tupaia chinensis]
Length = 1217
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 74 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD 133
+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ + + +V Y+ D
Sbjct: 821 IPYIEAPMEAEAQCAVLDLTDQTAGTITDDSDIWLFGARHVYKN-FFNKNKFVEYYQYVD 879
Query: 134 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK 193
+LG RN LI LA LLGSDY++G+ +G +A +I L GL +
Sbjct: 880 FHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI---------LNEFPGHGLEPLL 930
Query: 194 RAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD-SEA 252
+ E W +E +Q++ N D ++R+ Q+ + NP A
Sbjct: 931 KF----SEWW------QEAQKHQKLRPNPHDTKVKRKLRKLQLAPGFPNPAVADAYLKPV 980
Query: 253 VHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTL 306
V L+ L ++ ++F W KTDE + P + + ++++ LR ++
Sbjct: 981 VDASKGSFLWGKPDLDKIREYPFRYFGWNRTKTDESLFPVLKQLNVQQ-TQLRIDSF 1036
>gi|346321714|gb|EGX91313.1| DNA excision repair protein Rad2 [Cordyceps militaris CM01]
Length = 1162
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E ++L G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 861 RRDADEVTQVMVSECQSLLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFG 920
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY ++E+ L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 921 GTRVYKNMFNSNK-FVECYIGSELEKDLSLSRQQLISLAHLLGSDYTEGLPGVGPVTAVE 979
Query: 171 IV 172
I+
Sbjct: 980 IL 981
>gi|108706747|gb|ABF94542.1| XPG I-region family protein, expressed [Oryza sativa Japonica Group]
Length = 1477
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 854 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 913
Query: 119 WLGERGYVVCYEM----------------------DDIERKLGFGRNSLITLALLLGSDY 156
+ +R YV Y M DIE +LG R LI +A+LLGSDY
Sbjct: 914 F-DDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY 972
Query: 157 SQGVRGLGPESACQIVKSVGDNVVLQRI 184
++G+ G+G +A ++ + + LQ+
Sbjct: 973 TEGISGIGIVNAIEVAHAFPEEDGLQKF 1000
>gi|326663749|ref|XP_003197653.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Danio rerio]
Length = 1022
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 20/188 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E++ L GVP + EAEAQCA L+ G + DSDI+LFG R VYR+ +
Sbjct: 658 MCQESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDDSDIWLFGGRHVYRN-FF 716
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ YV Y++ D++ +LG R+ LI LA LLGSDY++G+ G+G + +I
Sbjct: 717 NQNKYVEHYQIVDMQNQLGLDRSKLINLAYLLGSDYTEGIPGVGYVTGMEI--------- 767
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W+ E N++++VN D ++++ Q+ +
Sbjct: 768 LNEFPGAGLEPLVQL----SEWWT------EAQENKKLSVNPKDTKVKKKLRNLQIHPGF 817
Query: 241 SNPKCYSA 248
NP A
Sbjct: 818 PNPAVAQA 825
>gi|295662156|ref|XP_002791632.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279758|gb|EEH35324.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1178
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 20/247 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 837 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFG 896
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 897 GTRVYKNMF-NQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 955
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ L+ R S+ + + ++ + ++ N T L
Sbjct: 956 ILTEFS---TLEDF---------RDWWSQVQMGAQLPDDSHSAFRKKFKKNATKLFLPPG 1003
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P S+V AY P+ S S + L Q W E+TDE ++P I
Sbjct: 1004 FPDSRVDTAYLEPEVDSDPS-----AFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVI 1058
Query: 291 AERDLRR 297
RD+ R
Sbjct: 1059 --RDMNR 1063
>gi|336383338|gb|EGO24487.1| hypothetical protein SERLADRAFT_467880 [Serpula lacrymans var.
lacrymans S7.9]
Length = 413
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 15/240 (6%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + L G+P + EAEAQCA L L DG + DSD+FLFG + V+++++
Sbjct: 11 MISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNMF- 69
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V C+ + D+ R+LG R +LI LA LLGSDY +G+ G+GP A +++K
Sbjct: 70 NQSKTVECFLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKEFPGEDG 129
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L + L V+ ++ +E + + D L +E P + V DAY
Sbjct: 130 LHKFKDWWLK-VQSGRDKDEE--------NKSKFRKRFKKKYKDLYLPQEWPNAAVRDAY 180
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 300
+P S++ L L + W K D+ +LP I + + R+ A
Sbjct: 181 YHPTVDSSEEP-----FKWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKRKQAT 235
>gi|239609845|gb|EEQ86832.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ER-3]
Length = 1166
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 828 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 887
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY +D+E++ R+ LI A LLGSDY++G+ G+GP +A +
Sbjct: 888 GTRVYKNMFNTVK-FVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALE 946
Query: 171 IV 172
I+
Sbjct: 947 IL 948
>gi|350417449|ref|XP_003491427.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Bombus
impatiens]
Length = 1107
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 43/260 (16%)
Query: 45 DKMSSLRRNMGS------EFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 97
DK + L N+G + S I+ EA+ L G+P + EAEAQCA L L D
Sbjct: 715 DKQTELMANIGKLERQGIDISDQIQIEAQELLRLFGIPYIIAPMEAEAQCAYLEQIHLID 774
Query: 98 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
G + DSDI+LFG + VY++ + + V+ + DI+ RN +I LALL+GSDY+
Sbjct: 775 GTITDDSDIWLFGGQCVYKNFFDNNKK-VLEFRSCDIQHYFKLTRNEMIRLALLVGSDYT 833
Query: 158 QGVRGLGPESACQIVK---SVGDNVVLQRIASEGL-SFVKRAKNSKKEGWSFKCNNKEES 213
G+ G+GP +A +I+ S GD+++ +GL +F +N K G K N + +
Sbjct: 834 TGLTGIGPVTALEILAAFPSEGDDLL------QGLINFSSWIENGKTAGPG-KANLRTKL 886
Query: 214 LNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LH 268
N +I Q+ P V+ AY +PK ++ F + L
Sbjct: 887 QNLQI---------QKGFPSQAVVQAYLSPKVDE----------SKETFTWGKPNIILLA 927
Query: 269 QVCAQFFQWPPEKTDEYILP 288
Q F W K D+ I P
Sbjct: 928 DYVKQKFGWDKNKYDKIIEP 947
>gi|327350765|gb|EGE79622.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ATCC
18188]
Length = 1166
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 828 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 887
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY +D+E++ R+ LI A LLGSDY++G+ G+GP +A +
Sbjct: 888 GTRVYKNMFNTVK-FVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALE 946
Query: 171 IV 172
I+
Sbjct: 947 IL 948
>gi|261198979|ref|XP_002625891.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis
SLH14081]
gi|239595043|gb|EEQ77624.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis
SLH14081]
Length = 1128
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 790 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 849
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY +D+E++ R+ LI A LLGSDY++G+ G+GP +A +
Sbjct: 850 GTRVYKNMFNTVK-FVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALE 908
Query: 171 IV 172
I+
Sbjct: 909 IL 910
>gi|195454489|ref|XP_002074261.1| GK18419 [Drosophila willistoni]
gi|194170346|gb|EDW85247.1| GK18419 [Drosophila willistoni]
Length = 1247
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 19/227 (8%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L +G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 881 FGIPYIVAPMEAEAQCAFLNATELTNGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRS 939
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S + S
Sbjct: 940 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSTATTVPSTQSICNQT 999
Query: 192 VKRAKNSKKEGWSFKCNNK-------EESLNQEI-NVNGTDHSLQRETPFSQVIDAYSNP 243
V ++ W N+ SL +++ N++ L P S V++AY +P
Sbjct: 1000 VLETLTRFRDWWQAHKNSNLPPGSSARLSLRKKLKNID-----LHEGFPSSAVVEAYLDP 1054
Query: 244 KCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
K + + + + F W KTD+ ++P I
Sbjct: 1055 KV-----DDNRDAFTWGTPDVDSIREFARKSFGWTTSKTDDILMPVI 1096
>gi|393242077|gb|EJD49596.1| hypothetical protein AURDEDRAFT_182745 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 15/230 (6%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + L G+P + EAEAQCA L L +G + DSD+FLFG+ V+++++
Sbjct: 884 MISQIMVLLRLFGIPYITAPMEAEAQCATLVALGLVEGVITDDSDVFLFGSARVFKNMF- 942
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V C+ D+ R+LG R+ LI LA LLGSDY G+ G+GP A +I++
Sbjct: 943 NQSKTVECFIAGDLTRELGLDRDKLIRLAYLLGSDYVDGLPGVGPVVAMEILEEFP---- 998
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
++GL + + G +N+ + + H L+ + P + V DAY
Sbjct: 999 ----GADGLHKFREWWVKVQSGKDKPEDNQSAFRKRFKKKFKSLH-LEDDWPNAVVRDAY 1053
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
+P +D + QH Q W +K D+ +LP I
Sbjct: 1054 YHPTVDESDEPFKWGLPDLDALQH-----FLGQELGWGQDKVDDLLLPII 1098
>gi|348516587|ref|XP_003445820.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oreochromis niloticus]
Length = 1119
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 107/240 (44%), Gaps = 32/240 (13%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP L EAEAQCA L+ G + DSD++LFG R VY++ +
Sbjct: 727 MYLESQELLRLFGVPYLVAPMEAEAQCAALDWADHTHGTITDDSDVWLFGGRHVYKNFFS 786
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
++ YV Y+ D++ +LG R +I LA LLGSDY++GV G+G + +I
Sbjct: 787 QDK-YVEHYQYSDLQSQLGLDRTKMINLAYLLGSDYTEGVPGVGYVTGMEI--------- 836
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKE---ESLNQEINVNGTDHSLQRETPFSQVI 237
L GL + + N WS K + + ++ D LQ P V
Sbjct: 837 LNEFPGPGLEPLIQFSN----WWSEAQEKKRLVSDPRDTKVKKKLRDVKLQPGFPNPVVA 892
Query: 238 DAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAE 292
AY +P ++S F R + + C F W KT+E + P I +
Sbjct: 893 QAYLHPTVDQSES----------FFSWGRPQLDMIKEFCLSRFGWSSRKTEETLQPVIKQ 942
>gi|125564417|gb|EAZ09797.1| hypothetical protein OsI_32084 [Oryza sativa Indica Group]
Length = 630
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA+TV
Sbjct: 122 AKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVI 181
Query: 116 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
+ + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A + V+
Sbjct: 182 KVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQL 241
Query: 175 VGDNVVLQRIASEG 188
++ VL ++ G
Sbjct: 242 FDEDNVLAKLYEIG 255
>gi|75288736|sp|Q64MA3.1|GENL1_ORYSJ RecName: Full=Flap endonuclease GEN-like 1; Short=OsGEN-L;
Short=Protein OsGEN-like; AltName: Full=OsRAD
gi|52075592|dbj|BAD46702.1| putative single-strand DNA endonuclease-1 [Oryza sativa Japonica
Group]
gi|62122402|dbj|BAD93194.1| putative nuclease [Oryza sativa Japonica Group]
gi|62122736|dbj|BAD93331.1| putative nuclease [Oryza sativa Japonica Group]
gi|215693373|dbj|BAG88755.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630495|gb|EEE62627.1| hypothetical protein OsJ_17430 [Oryza sativa Japonica Group]
Length = 629
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA+TV
Sbjct: 122 AKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVI 181
Query: 116 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
+ + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A + V+
Sbjct: 182 KVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQL 241
Query: 175 VGDNVVLQRIASEG 188
++ VL ++ G
Sbjct: 242 FDEDNVLAKLYEIG 255
>gi|392577233|gb|EIW70362.1| hypothetical protein TREMEDRAFT_43101 [Tremella mesenterica DSM 1558]
Length = 1306
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ MI + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I
Sbjct: 904 APMIAQIQTLLRHFGIPYITAPMEAEAQCAKLATLGLVDGIITDDSDVFLFGGNQCFKNI 963
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ + YV C+ DI+R++ R LI+LA LLGSDY+ G+ G+GP A +++
Sbjct: 964 F-NDSKYVECFLSSDIQREISLDRERLISLAYLLGSDYTIGLPGVGPVIALELL 1016
>gi|302674926|ref|XP_003027147.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
gi|300100833|gb|EFI92244.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
Length = 1139
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 8/147 (5%)
Query: 45 DKMSSLRRNMGSEFSC-------MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 97
D+++SLR+ + M+ + + G+P + EAEAQCA L +L D
Sbjct: 739 DEITSLRQQRTAAMRAAEDVTQQMVAQIMIMLRLFGIPYMTAPMEAEAQCATLVSLNLVD 798
Query: 98 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
G + DSD+FLFGA V+++++ + V C+ D++R+LG R LI LA LLGSDY+
Sbjct: 799 GVITDDSDVFLFGAARVFKNMF-NQSKTVECFLAADLQRELGLDRGVLIRLAYLLGSDYT 857
Query: 158 QGVRGLGPESACQIVKSVGDNVVLQRI 184
+G+ G+GP A ++++ L+R
Sbjct: 858 EGLPGVGPVMAMELLREFPGEDGLERF 884
>gi|380025170|ref|XP_003696351.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis florea]
Length = 1095
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 45 DKMSSLRRNMGS------EFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 97
DK + L N+G + S I+ EA+ L G+P L EAEAQCA L L D
Sbjct: 703 DKQTELIANIGKLERQGIDISDQIRIEAQELLKLFGIPYLVAPMEAEAQCAYLEQIHLTD 762
Query: 98 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
G + DSDI+LFG + VY++ + + V+ + DI+R RN +I LALL+GSDY+
Sbjct: 763 GTITDDSDIWLFGGQCVYKNFFDNNKK-VLEFRACDIQRYFKLTRNEMIRLALLVGSDYT 821
Query: 158 QGVRGLGPESACQIVK---SVGDNVV 180
G+ G+GP +A +I+ S G+N++
Sbjct: 822 TGLTGIGPVTALEILAAFPSEGENLL 847
>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
Length = 1279
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 119/265 (44%), Gaps = 38/265 (14%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ MI E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 915 RRDADEVTQSMITECQHLLTLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFG 974
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V CY +D+ + R+ +I +A LLGSDY+ G+ G+GP +A +
Sbjct: 975 GTRVYKNMFNAAK-FVECYLANDLVSEFSLTRDKMIAIAQLLGSDYTTGIPGIGPVTALE 1033
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN--------- 221
++ D LQ K+ W+ NN ++ ++ + N
Sbjct: 1034 LLAEFPD---LQDF---------------KDWWTGVQNN---TIPKDADKNSAFRRRFRR 1072
Query: 222 --GTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPP 279
T L P +V DAY +P+ S D E + A L + W
Sbjct: 1073 GQATKLFLPPGFPDQRVADAYLHPEVDS-DPEPFQWGVP----DLAALRTFLSSQIGWSW 1127
Query: 280 EKTDEYILPKIAERDLRRFANLRAN 304
E+TDE ++P I + + R +AN
Sbjct: 1128 ERTDEVLVPVIRDMNRREKEGTQAN 1152
>gi|383863581|ref|XP_003707258.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Megachile rotundata]
Length = 1072
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 5/125 (4%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EA+ L G+P + EAEAQCA L L DG + DSDI+LFG + VY++ + +
Sbjct: 704 EAQELLRLFGIPYIVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQCVYKNFFNNNK 763
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK---SVGDNVV 180
V+ + + DIE RN +I LALL+GSDY+ G+ G+GP +A +I+ S GDN +
Sbjct: 764 K-VLQFCLGDIEHHFKLTRNEMIQLALLVGSDYTVGLTGIGPVTALEILAAFPSQGDN-L 821
Query: 181 LQRIA 185
LQ +A
Sbjct: 822 LQGLA 826
>gi|449543076|gb|EMD34053.1| hypothetical protein CERSUDRAFT_107818 [Ceriporiopsis subvermispora
B]
Length = 1202
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L DG + DSD+FLFG + V ++++ + V CY +
Sbjct: 827 FGIPYITAPMEAEAQCAELLTLGLVDGIITDDSDVFLFGGQRVLKNMF-NQSKTVECYLL 885
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
D++R+LG R+ LI LA LLGSDY++G+ G+GP A +++
Sbjct: 886 PDLDRELGLDRDKLIRLAYLLGSDYTEGLPGVGPVVAMELL 926
>gi|328774021|gb|EGF84058.1| hypothetical protein BATDEDRAFT_2594, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 284
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQD-DKNLDKMSSLRR-------NMGS 56
L Y + +G+ PA+K T R + + V Q K +++ SL+ N
Sbjct: 41 LFYGILPVFVFDGATPALKRQTIASRRHRRATVEQSLRKTAERILSLQLQKRALIVNWQQ 100
Query: 57 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 116
SC+ L G+P + EAE+QCA L + L +G + DSD+F+FG VY+
Sbjct: 101 RKSCV----PLLLFIFGIPYIVATTEAESQCAFLQKQGLVEGIVTDDSDVFVFGGEVVYK 156
Query: 117 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+++ R V Y MD ++ +LG R LI LA LLGSDY+ G+ G+GP ++ +I+
Sbjct: 157 NMFTQTRS-VEIYTMDRLQEQLGLSREKLILLAYLLGSDYTPGLVGIGPVTSVEIL 211
>gi|195155670|ref|XP_002018724.1| GL25951 [Drosophila persimilis]
gi|194114877|gb|EDW36920.1| GL25951 [Drosophila persimilis]
Length = 1238
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 37 VTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 95
+ Q+ K+L+ + + MG S M + + L G+P + EAEAQCA LN L
Sbjct: 836 LAQERKDLEIERNRQDRMGMSISQRMSTDCQELLRLFGIPYIVAPMEAEAQCAFLNATEL 895
Query: 96 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 155
G + DSDI+LFG RTVY++ + + +V+ + + IE+ R LI LA L+GSD
Sbjct: 896 THGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVGSD 954
Query: 156 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 188
Y+ G+ G+G +A +I+ S + AS G
Sbjct: 955 YTTGIHGIGAVTAMEILASFSTTLDASSPASSG 987
>gi|209878979|ref|XP_002140930.1| DNA-repair protein UVH3 [Cryptosporidium muris RN66]
gi|209556536|gb|EEA06581.1| DNA-repair protein UVH3, putative [Cryptosporidium muris RN66]
Length = 1017
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 19/262 (7%)
Query: 39 QDDKNLDKMSSLRRNMGSEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 97
+ DK + K RR +E + I+ + + L + G+P ++ EAEAQ ++L LCD
Sbjct: 721 EHDKIMSKFQVQRRYTNAEITKEIQFQVRMLLQAFGIPWIDSPGEAEAQASILTQLGLCD 780
Query: 98 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGF-GRNSLITLALLLGSDY 156
G S DSD LFGA+ VYR+ + G V Y DIE LG + + LALLLG DY
Sbjct: 781 GVLSDDSDCILFGAKCVYRNFFCG--TTVEKYVKVDIENFLGIKNHDQMCILALLLGCDY 838
Query: 157 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ 216
+ GV G+GP +A +I+K+ + ++++ + R + +G + + +N + +
Sbjct: 839 TVGVSGVGPVNALEILKAYPNLSDMEKLKQWSTNLANRYDSD--DGINLQTDNIVQQEFK 896
Query: 217 EINVN-GTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFF 275
++ N S + P VI+A NP V + + +F +V +
Sbjct: 897 RVHSNYRYQWSFPSDFPSDAVINAIRNP--------TVDKSMEPFIFGDIEKEKVADIMY 948
Query: 276 QW---PPEKTDEYILPKIAERD 294
++ P EK IL K+ E++
Sbjct: 949 RYTTIPKEKVYN-ILDKVIEKN 969
>gi|195116755|ref|XP_002002917.1| GI10377 [Drosophila mojavensis]
gi|193913492|gb|EDW12359.1| GI10377 [Drosophila mojavensis]
Length = 1255
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 112/248 (45%), Gaps = 40/248 (16%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN + +G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 878 FGIPYIVAPMEAEAQCAFLNAVGITNGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRA 936
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN------------- 178
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S +
Sbjct: 937 EQIEKTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSTSTPNTELSPNSPSS 996
Query: 179 -VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVI 237
V +Q + S F + + K + + L + N+ L P S V+
Sbjct: 997 GVSMQSVLSTLEKFREWWQAHKSSNLPIGSSARLSLLKKLKNI-----ELHEGFPSSSVV 1051
Query: 238 DAYSNPK------CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP--- 288
+AY PK +S S V + + + F W KTD+ ++P
Sbjct: 1052 EAYLTPKVDDNRDAFSWGSPDVESI-----------REFSRKSFGWTTSKTDDILMPVMK 1100
Query: 289 KIAERDLR 296
KI E+ ++
Sbjct: 1101 KINEKKIQ 1108
>gi|198476637|ref|XP_002132415.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
gi|198137788|gb|EDY69817.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
Length = 1236
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 37 VTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 95
+ Q+ K+L+ + + MG S M + + L G+P + EAEAQCA LN L
Sbjct: 834 LAQERKDLEIERNRQDRMGMSISQRMSTDCQELLRLFGIPYIVAPMEAEAQCAFLNATEL 893
Query: 96 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 155
G + DSDI+LFG RTVY++ + + +V+ + + IE+ R LI LA L+GSD
Sbjct: 894 THGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVGSD 952
Query: 156 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 188
Y+ G+ G+G +A +I+ S + AS G
Sbjct: 953 YTTGIHGIGAVTAMEILASFSTTLDASSPASSG 985
>gi|5689765|emb|CAB52135.1| Nucleotide excision repair protein [Drosophila melanogaster]
Length = 378
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 12 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 70
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------GDNVVLQRIA 185
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S G + Q +
Sbjct: 71 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSGQDANGPGICNQSVL 130
Query: 186 SEGLSFVKRAKNSKKEGW-SFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSN 242
+ F ++ W + KC+N + + + + L P V++AY
Sbjct: 131 QTLIKF--------RDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYLA 182
Query: 243 PK------CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 293
P +S + V + + + F W KTD+ ++P KI E+
Sbjct: 183 PTIDDNRDAFSWGTPDVESI-----------REFTRKSFGWTTSKTDDILMPVMKKINEK 231
Query: 294 DLR 296
++
Sbjct: 232 KIQ 234
>gi|357608737|gb|EHJ66129.1| hypothetical protein KGM_15891 [Danaus plexippus]
Length = 722
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 7/138 (5%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
+ F ++KE + L ++GV C++G EAEA CA LN E L D S DSD F +GA+ VY
Sbjct: 113 TRFKGVLKECENLLRTMGVRCVKGRGEAEAACARLNAEGLVDAVVSQDSDCFAYGAKKVY 172
Query: 116 RDIWL-------GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
R+ + G V Y+ + GFGRN ++ LALL GSDY GV G +
Sbjct: 173 RNFSVSSAGGGGATHGSVDVYDAVKMFNNKGFGRNKMVALALLCGSDYGVGVCGSSKTTV 232
Query: 169 CQIVKSVGDNVVLQRIAS 186
+ +V ++ V+ R+ S
Sbjct: 233 VSFLHTVPEDQVISRLLS 250
>gi|255541446|ref|XP_002511787.1| DNA binding protein, putative [Ricinus communis]
gi|223548967|gb|EEF50456.1| DNA binding protein, putative [Ricinus communis]
Length = 609
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 49 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 108
S+ RN G+ C +KE L G+P L+ EAEA CA LN + L D C ++DSD FL
Sbjct: 109 SVERN-GAFLKC-VKECVELLELFGMPVLKANGEAEALCAQLNSQGLVDACITADSDAFL 166
Query: 109 FGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPES 167
FGA+ V + I + CY+M DIE L R LI +ALL+G+D+ GV+G+G ++
Sbjct: 167 FGAKCVIKSIKPNSKEPFECYQMSDIESGLALKRKHLIAIALLVGNDHDLNGVQGIGVDT 226
Query: 168 ACQIVKSVGDNVVL 181
A + V++ ++ +L
Sbjct: 227 ALRFVQTFHEDEIL 240
>gi|332029719|gb|EGI69598.1| DNA repair protein complementing XP-G cells-like protein
[Acromyrmex echinatior]
Length = 417
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Query: 46 KMSSLRRNMG------SEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 98
K L R++G + S IK +A+ L G+P + EAEAQCA L L DG
Sbjct: 18 KQEELARDIGKFERQATNISEQIKTDAQDLLRLFGIPYIIAPMEAEAQCAYLEQIKLTDG 77
Query: 99 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 158
+ DSDI+LFG + VY++ + ++ + DI+ RN LI LALL+GSDY+
Sbjct: 78 TITDDSDIWLFGGQCVYKN-FFNHNKRMLRFRACDIQHHFKLNRNQLIQLALLVGSDYTT 136
Query: 159 GVRGLGPESACQIVKSV---GDNVV 180
GV G+GP +A +I+ + GDNV+
Sbjct: 137 GVAGVGPVTALEILAAFPADGDNVL 161
>gi|389749913|gb|EIM91084.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 1350
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L +G + DSD+FLFG V+++++ + V C+ +
Sbjct: 917 FGIPYITAPMEAEAQCATLVQLGLVEGIITDDSDVFLFGGLRVFKNMF-NQSKTVECFLL 975
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDNVV 180
D+ R+LG RN L+ LA LLGSDY++G+ G+GP A +++K GD+ +
Sbjct: 976 SDLARELGLERNKLVQLAYLLGSDYTEGLPGVGPVVAMELLKEFHGDDAL 1025
>gi|390364842|ref|XP_790336.3| PREDICTED: DNA repair protein complementing XP-G cells-like
[Strongylocentrotus purpuratus]
Length = 375
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
M ++K + G+P +E +EAEAQCA L+L + +G + D DI+LFG R V+R
Sbjct: 103 TMYADSKEMLQCFGIPYIESPQEAEAQCAFLDLTNQTEGTITDDGDIWLFGGRRVFRHF- 161
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
++ + + DIER L R LI LA L+GSDY+ G++G+G SVG
Sbjct: 162 FSKKKDPEYFRVGDIERHLLLDRKKLINLAYLVGSDYTLGIQGIG---------SVGAME 212
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
+L GL +K K+ WS + SLN L E P + A
Sbjct: 213 ILAEFKGHGLKTLKDFKS----WWSRTQDQGVPSLNA-TRSKWCKLVLPDEFPNPLIAKA 267
Query: 240 YSNP 243
Y+NP
Sbjct: 268 YTNP 271
>gi|403413406|emb|CCM00106.1| predicted protein [Fibroporia radiculosa]
Length = 2893
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L DG + DSD+FLFG V ++++ + V C+ +
Sbjct: 2509 FGIPYITAPMEAEAQCAELLSLGLVDGIITDDSDVFLFGGMRVLKNMF-NQSKTVECFLL 2567
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
D+ER+LG R+ LI LA LLGSDY+ G+ G+GP A +++K
Sbjct: 2568 SDLERELGLERDKLIRLAYLLGSDYTDGLPGVGPVVAMELLK 2609
>gi|5758314|gb|AAD50779.1|AF162792_1 XPG [Drosophila melanogaster]
Length = 1236
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 928
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------GDNVVLQRIA 185
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S G + Q +
Sbjct: 929 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSGRDANGPGICNQSVL 988
Query: 186 SEGLSFVKRAKNSKKEGW-SFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSN 242
+ F ++ W + KC+N + + + + L P V++AY
Sbjct: 989 QTLIKF--------RDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYLA 1040
Query: 243 P------KCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 293
P +S + V + + + F W KTD+ ++P KI E+
Sbjct: 1041 PTIDDNRDAFSWGTPDVESI-----------REFTRKSFGWTTSKTDDILMPVMKKINEK 1089
Query: 294 DLR 296
++
Sbjct: 1090 KIQ 1092
>gi|5758316|gb|AAD50780.1|AF162793_1 XPG variant [Drosophila melanogaster]
Length = 1257
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 891 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 949
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------GDNVVLQRIA 185
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S G + Q +
Sbjct: 950 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSGRDANGPGICNQSVL 1009
Query: 186 SEGLSFVKRAKNSKKEGW-SFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSN 242
+ F ++ W + KC+N + + + + L P V++AY
Sbjct: 1010 QTLIKF--------RDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYLA 1061
Query: 243 PK------CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 293
P +S + V + + + F W KTD+ ++P KI E+
Sbjct: 1062 PTIDDNRDAFSWGTPDVESI-----------REFTRKSFGWTTSKTDDILMPVMKKINEK 1110
Query: 294 DLR 296
++
Sbjct: 1111 KIQ 1113
>gi|78706850|ref|NP_001027230.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
gi|78706852|ref|NP_001027231.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|5051952|gb|AAD38375.1|AF144092_1 nucleotide excision repair protein MUS201 [Drosophila melanogaster]
gi|7297419|gb|AAF52678.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|28380312|gb|AAO41169.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
Length = 1236
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 928
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------GDNVVLQRIA 185
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S G + Q +
Sbjct: 929 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSGQDANGPGICNQSVL 988
Query: 186 SEGLSFVKRAKNSKKEGW-SFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSN 242
+ F ++ W + KC+N + + + + L P V++AY
Sbjct: 989 QTLIKF--------RDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYLA 1040
Query: 243 P------KCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 293
P +S + V + + + F W KTD+ ++P KI E+
Sbjct: 1041 PTIDDNRDAFSWGTPDVESI-----------REFTRKSFGWTTSKTDDILMPVMKKINEK 1089
Query: 294 DLR 296
++
Sbjct: 1090 KIQ 1092
>gi|195473066|ref|XP_002088817.1| GE18773 [Drosophila yakuba]
gi|194174918|gb|EDW88529.1| GE18773 [Drosophila yakuba]
Length = 1237
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 34 GSEVTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 92
S + Q+ K L+ + + MG S M + + L G+P + EAEAQCA LN
Sbjct: 832 ASNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNA 891
Query: 93 ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLL 152
L G + DSDI+LFG RTVY++ + + +V+ + + IE+ R LI LA L+
Sbjct: 892 TDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLV 950
Query: 153 GSDYSQGVRGLGPESACQIVKS 174
GSDY+ G+ G+G +A +I+ S
Sbjct: 951 GSDYTTGIHGIGAVTALEILAS 972
>gi|300120755|emb|CBK20997.2| unnamed protein product [Blastocystis hominis]
Length = 548
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L+L L DG S+DSD+F FG +T+YR+ ++ R +V Y++
Sbjct: 455 FGIPYVFAPGEAEAQCAFLDLMELVDGVISNDSDVFAFGGKTMYRNFFVDNR-FVEVYKI 513
Query: 132 DDIERKLGFGRNSLITLALLLGSDY 156
+DIE++ G RN +I LALLLG DY
Sbjct: 514 EDIEKERGLNRNRIIELALLLGCDY 538
>gi|242019297|ref|XP_002430098.1| DNA excision repair protein, putative [Pediculus humanus corporis]
gi|212515179|gb|EEB17360.1| DNA excision repair protein, putative [Pediculus humanus corporis]
Length = 1052
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +A+AL GVP + EAEAQCA L++ L +G + DSDI+LFG VY++ +
Sbjct: 667 MYSDAQALLKLFGVPYIVAPMEAEAQCAALDILGLTEGTITDDSDIWLFGGTVVYKN-FF 725
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
++ +V+ Y +I++ R LI LA+L+GSDY+ G+ G+GP +A +I+
Sbjct: 726 NQKKHVLEYTSLNIQKNFKLNREDLIRLAMLVGSDYTLGLTGIGPVTAMEIL 777
>gi|78706854|ref|NP_001027232.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
gi|10728671|gb|AAG22424.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
Length = 1257
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 891 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 949
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------GDNVVLQRIA 185
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S G + Q +
Sbjct: 950 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSGQDANGPGICNQSVL 1009
Query: 186 SEGLSFVKRAKNSKKEGW-SFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSN 242
+ F ++ W + KC+N + + + + L P V++AY
Sbjct: 1010 QTLIKF--------RDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYLA 1061
Query: 243 P------KCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 293
P +S + V + + + F W KTD+ ++P KI E+
Sbjct: 1062 PTIDDNRDAFSWGTPDVESI-----------REFTRKSFGWTTSKTDDILMPVMKKINEK 1110
Query: 294 DLR 296
++
Sbjct: 1111 KIQ 1113
>gi|156084190|ref|XP_001609578.1| Rad2 endonuclease [Babesia bovis T2Bo]
gi|154796830|gb|EDO06010.1| Rad2 endonuclease, putative [Babesia bovis]
Length = 1002
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 12/195 (6%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP + EAEAQCA LN LC G S DSD FGA+ V+++ + G V Y
Sbjct: 696 FGVPFIVAPSEAEAQCAHLNNTGLCFGVISDDSDTLAFGAKRVFKNFYSGNVFEV--YVA 753
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK---SVGDNVVLQRIASEG 188
D I +LG GRN + LA+L G DY+ GVRG+G +A +++K + D +R A+
Sbjct: 754 DRILHELGLGRNEIALLAILCGCDYTPGVRGIGVVNALEVIKAFPTFDDLYEFRRWATSD 813
Query: 189 LSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP---FSQVIDAYSNPKC 245
+++ K KE +N ++ + RE S V+ + PK
Sbjct: 814 CDITTVTQDT----CPLKQAYKESHVNYRMHWSFGSDFPNREAYNLLLSPVVSSTFKPKW 869
Query: 246 YSADSEAVHRVLAQH 260
+ D + + R +++H
Sbjct: 870 RTPDYDGIMRFMSKH 884
>gi|340376739|ref|XP_003386889.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Amphimedon queenslandica]
Length = 739
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P LE EAEAQC+ L SL G + D+D+FLFG VYR ++ G V Y
Sbjct: 460 FGLPYLESPSEAEAQCSTLESLSLTQGTITDDNDVFLFGGMNVYRHMFTGSHD-VEYYRN 518
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
DIE LG RN+LI LA LLG DY+ G+ G+G +A ++V+
Sbjct: 519 ADIETLLGLDRNNLIILAYLLGCDYTDGIEGVGVVNALELVQ 560
>gi|5712619|gb|AAD47568.1|AF125578_1 DNA repair endonuclease [Drosophila melanogaster]
Length = 1236
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 928
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------GDNVVLQRIA 185
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S G + Q +
Sbjct: 929 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSGQDANGPGICNQSVL 988
Query: 186 SEGLSFVKRAKNSKKEGW-SFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSN 242
+ F ++ W + KC+N + + + + L P V++AY
Sbjct: 989 QTLIKF--------RDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYLA 1040
Query: 243 P------KCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 293
P +S + V + + + F W KTD+ ++P KI E+
Sbjct: 1041 PTIDDNRDAFSWGTPDVESI-----------REFTRKSFGWTTSKTDDILMPVMKKINEK 1089
Query: 294 DLR 296
++
Sbjct: 1090 KIQ 1092
>gi|170099279|ref|XP_001880858.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644383|gb|EDR08633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1137
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 111/248 (44%), Gaps = 21/248 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + G+P + EAEAQCA L L DG + DSD+FLFG + VY++++
Sbjct: 742 MITQIMTMLRLFGIPYITAPMEAEAQCAELVTLKLVDGIITDDSDVFLFGGQRVYKNMF- 800
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V + + D+ R LG +++LI LA LLGSDY +G+ G+GP A ++
Sbjct: 801 NQSKTVEGFALADLTRDLGLDQDALIRLAYLLGSDYVEGLPGVGPVVAMEL--------- 851
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
LQ + + + +K + K + + + D L + P S V DAY
Sbjct: 852 LQEFPGKDGLYKFKDWWTKVQAGKDKGEDNKSKFRKSFKKKFKDLYLPSDWPNSAVQDAY 911
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 300
+P S++ L L Q W K DE +LP I + N
Sbjct: 912 YHPIVDSSEEP-----FKWGLPDLDALRDFLNQELGWGKAKVDENLLPIIQK------MN 960
Query: 301 LRANTLAL 308
R+ +AL
Sbjct: 961 KRSQAMAL 968
>gi|74141150|dbj|BAE35888.1| unnamed protein product [Mus musculus]
Length = 644
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 498 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 556
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+
Sbjct: 557 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEIL 608
>gi|449298336|gb|EMC94351.1| hypothetical protein BAUCODRAFT_73871 [Baudoinia compniacensis UAMH
10762]
Length = 1348
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 121/265 (45%), Gaps = 31/265 (11%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 969 RRDADEVTHIMVTECQQLLRLFGLPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDCFLFG 1028
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V CY D+E++ R LI +A LLGSDY++G+ +GP +A +
Sbjct: 1029 GTRIYKNMF-NQAKFVECYLSSDLEKEFDLTRQKLIAVAHLLGSDYTEGLPSVGPVTALE 1087
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I +G+ V LS K N + K +K+ + ++ N T L
Sbjct: 1088 I---LGEFV--------SLSDFKDWWNGVQMNIIPKDVDKDNAFRKKFRKNATKLFLPPA 1136
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDEY 285
P +V AY P+ DS+ FQ L W E+TDE
Sbjct: 1137 FPDKRVDVAYETPEV---DSDP-------QPFQWGVPDLDALRSFLMATIGWSQERTDEV 1186
Query: 286 ILPKIAERDLRRFAN--LRANTLAL 308
++P I RD+ R A+ +AN A
Sbjct: 1187 LVPVI--RDMNRRADEGTQANITAF 1209
>gi|432852332|ref|XP_004067195.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oryzias latipes]
Length = 1078
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 110/239 (46%), Gaps = 30/239 (12%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP L EAEAQCA L+ G + DSD++LFG R VY++ +
Sbjct: 689 MYLESQELLRLFGVPFLVAPMEAEAQCAALDRADQTHGTITDDSDVWLFGGRHVYKN-FF 747
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ YV Y+ D++ +LG R +I LA LLGSDY++GV G+G + +I
Sbjct: 748 SQNKYVEHYQYSDLQNQLGLDRAKMINLAYLLGSDYAEGVPGVGYVTGMEI--------- 798
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLN-QEINVNGTDHSLQRETPFSQ--VI 237
L GL +K+ + WS NK + + Q+ V +L+ ++ F V
Sbjct: 799 LNEFPGPGLEPLKQF----SQWWSQAQENKRLTADPQDTKVKKKLRALKLQSGFPNPAVA 854
Query: 238 DAY----SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292
AY +P C S + Q + + C F W KT+E + P + +
Sbjct: 855 QAYLEPAVDPSCSS---------FSWGRPQLDVIKEFCLSRFGWSSRKTEEILQPVVKQ 904
>gi|50551183|ref|XP_503065.1| YALI0D20240p [Yarrowia lipolytica]
gi|49648933|emb|CAG81257.1| YALI0D20240p [Yarrowia lipolytica CLIB122]
Length = 1115
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLFGART---VY 115
M+ E + L G+P + EAEAQCA L+NL+ L DG + DSD+FLF + V+
Sbjct: 818 TMVDECQQLLQLFGIPFITAPTEAEAQCATLVNLD-LVDGVITEDSDVFLFSSNPRMRVF 876
Query: 116 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
++ + + YV CY+ +IE+ L R L+ LALLLGSDY+ G+ G+GP SA +I+
Sbjct: 877 KNFFNSNK-YVECYKTGEIEQTLNLERKDLVDLALLLGSDYTDGLPGIGPVSAMEIL 932
>gi|328791064|ref|XP_393585.4| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis mellifera]
Length = 1094
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 5/130 (3%)
Query: 55 GSEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 113
G + S I+ EA+ L G+P L EAEAQCA L L DG + DSDI+LFG +
Sbjct: 724 GIDISDQIRIEAQELLQLFGIPYLVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQC 783
Query: 114 VYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
VY++ + + V+ + DI+ RN +I LALL+GSDY+ G+ G+GP +A +I+
Sbjct: 784 VYKNFFDNNKK-VLEFRACDIQHYFKLTRNEMIRLALLVGSDYTTGLTGIGPVTALEILA 842
Query: 174 ---SVGDNVV 180
S GD+++
Sbjct: 843 AFPSEGDDLL 852
>gi|444731649|gb|ELW71998.1| Flap endonuclease GEN like protein 1 [Tupaia chinensis]
Length = 793
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S+F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SQFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNACGYVDGCLTNDGDAFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY
Sbjct: 168 RNFTMNTKDPHVDCYTMSCIKDKLGLDRDALVGLAILLGCDY 209
>gi|195577623|ref|XP_002078668.1| GD23543 [Drosophila simulans]
gi|194190677|gb|EDX04253.1| GD23543 [Drosophila simulans]
Length = 1235
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 869 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 927
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 928 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 970
>gi|195397917|ref|XP_002057574.1| GJ18024 [Drosophila virilis]
gi|194141228|gb|EDW57647.1| GJ18024 [Drosophila virilis]
Length = 1238
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
Query: 34 GSEVTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 92
+ + Q+ + L+ + + MG S M + + L G+P + EAEAQCA LN
Sbjct: 846 ATSLAQERRELEAERNRQDRMGMSISQRMSNDCQELLRLFGIPYIVAPMEAEAQCAFLNA 905
Query: 93 ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLL 152
+ +G + DSDI+LFG RTVY++ + + +V+ + + IE+ R+ LI LA L+
Sbjct: 906 VGITNGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRAEQIEQTFNCSRDKLIQLACLV 964
Query: 153 GSDYSQGVRGLGPESACQIVKS 174
GSDY+ G+ G+G +A +I+ S
Sbjct: 965 GSDYTTGIHGIGAVTALEILAS 986
>gi|242800576|ref|XP_002483617.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC
10500]
gi|218716962|gb|EED16383.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC
10500]
Length = 1128
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 817 RRDADEVSQIMVSECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFG 876
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ + +V C+ D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 877 GTRVYKNMF-NQSKFVECFLSSDLEKEYALDRIKLIQFAHLLGSDYTEGIPGVGPVTALE 935
Query: 171 IV 172
I+
Sbjct: 936 II 937
>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
gi|48427872|sp|P61942.1|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
Length = 339
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRR------LNSGSEVTQDDKNLDKMSSLRRNMGSEF 58
L Y + +G+ P K+ + +R L S + N+ + +++G
Sbjct: 70 LEYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAIKYAKSLGKLD 129
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M++EAK L ++G+P ++ E EA+ A L + + D C S D D LFG+ V R+I
Sbjct: 130 SYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSLLFGSPRVVRNI 189
Query: 119 WLGERG-------YV-VCYEMDDIERKLGF---GRNSLITLALLLGSDYSQGVRGLGPES 167
+ E+ YV V E+ ++E L + R LI +A+LLG+DY++ V G+GP++
Sbjct: 190 TISEKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGTDYNEKVPGIGPKT 249
Query: 168 ACQIVKSVGDNV 179
A +IVK GD +
Sbjct: 250 AIEIVKRFGDPI 261
>gi|212540874|ref|XP_002150592.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
gi|210067891|gb|EEA21983.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
Length = 1127
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 816 RRDADEISQIMVSECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFG 875
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+Y++++ + +V C+ +D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 876 GTRIYKNMF-NQSKFVECFLSNDLEKEYALDRVKLIQFAHLLGSDYTEGIPGVGPVTALE 934
Query: 171 IV 172
I+
Sbjct: 935 II 936
>gi|195339243|ref|XP_002036229.1| GM16947 [Drosophila sechellia]
gi|194130109|gb|EDW52152.1| GM16947 [Drosophila sechellia]
Length = 1108
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 742 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 800
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 801 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 843
>gi|194760687|ref|XP_001962569.1| GF15526 [Drosophila ananassae]
gi|190616266|gb|EDV31790.1| GF15526 [Drosophila ananassae]
Length = 1237
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNAADLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRS 928
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 929 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 971
>gi|353238841|emb|CCA70774.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Piriformospora indica DSM 11827]
Length = 1153
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 126/277 (45%), Gaps = 45/277 (16%)
Query: 36 EVTQDDKNLDKMSS-LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 94
E+ Q+ K L++ L+R+ M+ + L G+P + EAEAQCA L
Sbjct: 753 EIDQEIKQLNQARKVLQRDSEEITQQMVSQIMMLLRLFGIPYITAPMEAEAQCAKLLSLG 812
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154
L +G + DSD+FLFGA V+++++ + V C+ D++R+LG + LI LA LLGS
Sbjct: 813 LVEGVITDDSDVFLFGATRVFKNMF-NQSKTVECFLAADLQRELGLDQEKLIRLAYLLGS 871
Query: 155 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESL 214
DY G+ G+GP A +I+ + + S ++ KE W + +S
Sbjct: 872 DYVDGLEGVGPVVAMEILNE------FETAGKQEDSLLR-----FKEWW-----RRVQSG 915
Query: 215 NQEINVNGTDHS-----------LQRETPFSQVIDAYSNPKCYSADSEAVHRVL----AQ 259
N GT+ L + P V DAY +P ++ EA L A
Sbjct: 916 QDTENDTGTEFRKRFKKKFKNLHLAGDWPNPAVRDAYLHPTVDESE-EAFKWGLPDLDAL 974
Query: 260 HLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 293
F H LH V A KTDE +LP K+ ER
Sbjct: 975 RTFLHEELHWVQA--------KTDELLLPIIRKMGER 1003
>gi|194863176|ref|XP_001970313.1| GG10553 [Drosophila erecta]
gi|190662180|gb|EDV59372.1| GG10553 [Drosophila erecta]
Length = 1237
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 871 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRA 929
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 930 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 972
>gi|409048860|gb|EKM58338.1| hypothetical protein PHACADRAFT_193460 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1225
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 15/219 (6%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L DG + DSD+FLFG V ++++ + V C+ +
Sbjct: 852 FGIPYITAPMEAEAQCAELLALGLVDGIITDDSDVFLFGGARVLKNMF-NQSKTVECFLL 910
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
D+ R+LG R LI LA LLGSDY++G+ G+GP A +++ S+GL
Sbjct: 911 SDLGRELGLEREKLIRLAYLLGSDYTEGLPGVGPVVAMELLTEFS--------GSDGLHK 962
Query: 192 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE 251
+ + G +NK + + + L + P V DAY +P S++
Sbjct: 963 FREWWRKVQSGRDTLEDNKSKFRKRFKKRF-KELYLPEDWPNPTVRDAYYHPTVDSSEEP 1021
Query: 252 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
L L Q W EK D+ +LP I
Sbjct: 1022 -----FKWGLPDLDALRQFFNAELGWAQEKVDDLLLPVI 1055
>gi|443725425|gb|ELU13028.1| hypothetical protein CAPTEDRAFT_123501, partial [Capitella teleta]
Length = 206
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGS-EVTQDDKNLDKMSSLRRNM-GSEFSCMIKEAKAL 68
L+ ++ G P +K ++RL + + E Q + S+ +R M +C+I + +
Sbjct: 20 LVFAVEGDPPPLKWEMIQKRLQARTGEGPQGSYSSSFQSNSQRGMIALTINCLIIAVQFI 79
Query: 69 GLS-----LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
LGVP ++ EAEA CA LN E + D ++D D FL+GAR VYR+ + +
Sbjct: 80 QCCELLDLLGVPHVQSSGEAEAMCAQLNKEKVVDAVITNDGDAFLYGARKVYRNFTMNTK 139
Query: 124 G-YVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVL 181
+V Y MD+IE KL R +L+ LALLLG DY+ QGV G+G E+ +++ + +L
Sbjct: 140 DPHVESYCMDEIEDKLSLDRKTLVALALLLGCDYAPQGVAGVGKETVLKLIAELNGTSLL 199
Query: 182 QRIAS 186
+ S
Sbjct: 200 DKSVS 204
>gi|357159491|ref|XP_003578463.1| PREDICTED: flap endonuclease GEN-like 1-like [Brachypodium
distachyon]
Length = 639
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
F+ ++E L LG+P L EAEA CA LN E D C +SDSD FLFGA+TV +
Sbjct: 126 FTRYVEECVELLGYLGMPVLRATGEAEALCAQLNNEGHVDACITSDSDAFLFGAKTVIKV 185
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVG 176
+ + CY + DIE +G R ++ +ALL+GSD+ GV G G E+A + V+
Sbjct: 186 LRSNCKEPFECYNIADIESGIGLKRKQMVAMALLVGSDHDLHGVPGFGVETALRFVQLFE 245
Query: 177 DNVVLQRIASEG 188
++ +L ++ G
Sbjct: 246 EDHILDKLKEIG 257
>gi|58258651|ref|XP_566738.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. neoformans JEC21]
gi|57222875|gb|AAW40919.1| single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1323
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MI + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I+
Sbjct: 946 SMIAQIQTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNIF 1005
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ Y C+ + D+ER+L R LI+LA LGSDY+ G+ G+GP +I+
Sbjct: 1006 -NDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEIL 1057
>gi|134106579|ref|XP_778300.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261003|gb|EAL23653.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1323
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MI + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I+
Sbjct: 946 SMIAQIQTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNIF 1005
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ Y C+ + D+ER+L R LI+LA LGSDY+ G+ G+GP +I+
Sbjct: 1006 -NDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEIL 1057
>gi|392564416|gb|EIW57594.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 1244
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L DG + DSD+FLFG V ++++ + V C+ +
Sbjct: 849 FGIPYITAPMEAEAQCAALLSFGLVDGIITDDSDVFLFGGGRVLKNMF-NQSKTVECFLL 907
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
D+ER+LG R+ L+ LA LLGSDY+ G+ G+GP A +++
Sbjct: 908 SDLERELGLDRDKLVRLAYLLGSDYTDGLPGVGPVVAMELL 948
>gi|242045348|ref|XP_002460545.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
gi|241923922|gb|EER97066.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
Length = 590
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RRN + F+ ++E L LG+P L EAEA CA LN E D C ++DSD FLFG
Sbjct: 120 RRN--AAFTRCVEECVELLEYLGMPVLRAKGEAEALCAQLNNEGHVDACITADSDAFLFG 177
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESAC 169
A+TV + + CY + DIE LG R ++ +ALL+GSD+ GV G G E+A
Sbjct: 178 AKTVVKVFRSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHDLHGVPGFGLETAL 237
Query: 170 QIVKSVGDNVVLQRIASEG 188
+ V+ ++ +L ++ G
Sbjct: 238 RFVQLFDEDEILDKLHEIG 256
>gi|395332541|gb|EJF64920.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 1217
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L DG + DSD+FLFG V ++++ + V C+
Sbjct: 816 FGIPYITAPMEAEAQCAALLSLGLVDGIITDDSDVFLFGGGRVLKNMF-NQSKTVECFLT 874
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
D+ER+LG R+ L+ LA LLGSDY++G+ G+GP A +++
Sbjct: 875 TDLERELGLDRDKLVRLAYLLGSDYTEGLPGVGPVVAMELL 915
>gi|427797693|gb|JAA64298.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 856
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
+R+ S ++KE + L LG P + EAEAQCA L L G + DSD +LFG
Sbjct: 576 QRHAASLNDVLVKECQELLALLGQPYVVSPGEAEAQCAWLEQHGLSQGVVTDDSDAWLFG 635
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
A+ +YR ++ +R + + M D+ + G R ++ ALL GSDY+ GV G+GP +A +
Sbjct: 636 AQCIYRHLFRPDR-RPMRFLMKDLASQFGLDRQKMVAFALLCGSDYTTGVNGVGPVTAME 694
Query: 171 IVKSV-GDNVVLQRIASEGLSFVKRAKNSK 199
++ GD+ V + E +++++AK K
Sbjct: 695 VLSEFKGDDAV--SLLEEFRTWLEKAKEEK 722
>gi|321251586|ref|XP_003192115.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
gattii WM276]
gi|317458583|gb|ADV20328.1| Single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus gattii WM276]
Length = 1263
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M+ + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I
Sbjct: 885 ASMVAQIQTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNI 944
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ + Y C+ + D+ER+L R LI+LA LGSDY+ G+ G+GP +I+
Sbjct: 945 F-NDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEIL 997
>gi|449676998|ref|XP_002156033.2| PREDICTED: DNA repair protein complementing XP-G cells-like,
partial [Hydra magnipapillata]
Length = 431
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P L EAEAQCA LNL L +G + DSDIFLFGA VY++I+ ++ CY
Sbjct: 109 FGIPYLVSPMEAEAQCAALNLLKLTNGTITDDSDIFLFGAENVYKNIFNKDK-IPECYSS 167
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 186
D+E L R LI +A L GSDY++G+ G+G +A +I+++ + +A+
Sbjct: 168 KDLETLLYLTREKLIAVAFLTGSDYTEGLPGVGGITAMEILQAFAKKTAEETLAN 222
>gi|63098616|gb|AAY32559.1| single strand DNA repair-like protein [Triticum monococcum]
Length = 646
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
F+ +K+ L +LG+P L EAEA CA LN E D C +SDSD FLFGA+TV +
Sbjct: 126 FTRCVKDCVELLKNLGMPVLWAKGEAEALCAQLNNEGEVDACITSDSDAFLFGAKTVIKV 185
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVG 176
+ + CY + DIE +G R ++ +ALL+GSD+ GV G G E+A + V+
Sbjct: 186 MRSNCKEPFECYNIVDIESGIGLKRKQMVAMALLIGSDHDLHGVPGFGVETALRFVRLFD 245
Query: 177 DNVVLQRIASEG 188
++ +L ++ G
Sbjct: 246 EDQILDKLHEIG 257
>gi|68076243|ref|XP_680041.1| DNA repair endonuclease [Plasmodium berghei strain ANKA]
gi|56500911|emb|CAH98970.1| DNA repair endonuclease, putative [Plasmodium berghei]
Length = 1262
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 4/132 (3%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M ++ K L G+P ++ EAEAQC+ LN + CD S DSD+ +F +T+ ++ +
Sbjct: 939 MNEDIKLLLDFFGIPYIQAPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKN-FF 997
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK---SVGD 177
++ V YE + IERKLG ++ LI +++L G DY+ GV G+G +A +IVK + D
Sbjct: 998 NKKKTVEVYEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGVGIVNALEIVKAFPTFDD 1057
Query: 178 NVVLQRIASEGL 189
+L+ I S L
Sbjct: 1058 LKILKEIVSNPL 1069
>gi|392595001|gb|EIW84325.1| hypothetical protein CONPUDRAFT_100293 [Coniophora puteana RWD-64-598
SS2]
Length = 1485
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L +G + DSD+FLFG V+++++ + V C+ +
Sbjct: 964 FGIPYITAPMEAEAQCAELVQLGLVEGVITDDSDVFLFGGLRVFKNMF-NQSKTVECFLL 1022
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
D+ R+LG R++L+ LA LLGSDY +G+ G+GP A +++K ++GL
Sbjct: 1023 SDLARELGLERDTLVRLAYLLGSDYVEGLPGVGPVVAMELLKEF--------PGADGLHK 1074
Query: 192 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE 251
+ + G + +++ + + D L E P QV DAY +P S+
Sbjct: 1075 FRDWWGKVQSGRDREADSQSKFRKRFKKKF-KDLYLPPEWPNPQVRDAYYHPTVDSS--- 1130
Query: 252 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 297
+ L + + W +K D+ +LP I + R+
Sbjct: 1131 --REPFKWGMPDLDALREFLREELSWGQKKVDDLLLPIIQKMSRRK 1174
>gi|70953099|ref|XP_745672.1| DNA repair endonuclease [Plasmodium chabaudi chabaudi]
gi|56526070|emb|CAH76802.1| DNA repair endonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 1281
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 4/132 (3%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M ++ K L G+P ++ EAEAQC+ LN + CD S DSD+ +F +T+ ++ +
Sbjct: 957 MNEDIKLLLNFFGIPYIQSPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKN-FF 1015
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK---SVGD 177
++ V YE + IERKLG ++ LI +++L G DY+ GV G+G +A ++VK + D
Sbjct: 1016 NKKKTVEVYEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGIGIVNALEVVKAFPTFDD 1075
Query: 178 NVVLQRIASEGL 189
+L+ I S L
Sbjct: 1076 LKILKEIVSNPL 1087
>gi|297668153|ref|XP_002812316.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Pongo abelii]
Length = 912
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 159/392 (40%), Gaps = 91/392 (23%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ E EA CA L + DGC ++D D FL Y
Sbjct: 108 SHFKSVLRECLHMLXCLGIPWVQAAGEPEALCAYLIVGDHVDGCLTNDGDTFLXXXXXXY 167
Query: 116 RDIWLGERG-----YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESAC 169
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A
Sbjct: 168 VLFEDXTKSVLXDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQAL 227
Query: 170 QIVKSVGDNVVLQRI-----------------------------------ASEGLSFVKR 194
++++ + +LQR G K
Sbjct: 228 KLIQILKGQSLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKS 287
Query: 195 AKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSA 248
K + + + C + + +N +++++++ PF +VI +
Sbjct: 288 DKYCEPHDYEYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLL 341
Query: 249 DSEAVHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANL 301
+ + + +V+ LFQ L ++ +WP E +L + D+ R+ +
Sbjct: 342 NKDKLVKVIRYQRPDLLLFQRFTLEKM-----EWPSHYACEKLLVLLTHYDMIERKLGSR 396
Query: 302 RANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS--------- 350
+N L P++ I+K+R G CFE+ WE E Y ++
Sbjct: 397 NSNQLQ----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALL 441
Query: 351 SVVPADLIESACPEKIVEFEERRALRQPKKSK 382
++ L E+A PE + +++++ + KK K
Sbjct: 442 TIEEESLFEAAYPEIVAVYQKQKLEIKGKKQK 473
>gi|401888761|gb|EJT52712.1| hypothetical protein A1Q1_02762 [Trichosporon asahii var. asahii CBS
2479]
Length = 1245
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 25/241 (10%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
M+ + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I+
Sbjct: 879 AMVVQIQTLLRHFGIPYITAPMEAEAQCAKLAELGLVDGIITDDSDVFLFGGTQCFKNIF 938
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
+ + C D+ER+L R LI+L+ LLGSDY+ G+ G+GP A +++ +
Sbjct: 939 -NDNKFAECILATDVERELSLTRERLISLSYLLGSDYTIGLPGIGPVLALELLANFPGPD 997
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 239
L R E + V+R ++ E + N ++ + I L + P QV +A
Sbjct: 998 GLLRF-KEWWTRVQRGQDLDVEADTKWKRNFKKRFSGSI-------FLLSDWPNPQVREA 1049
Query: 240 YSNPKCYSADSEAVH----RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAE 292
Y P +D E H R+ A F H L W K D+ + P +IA+
Sbjct: 1050 YLYPTTDESD-EPFHWGFPRLQALRTFLHEELS--------WSISKVDDELTPIVQRIAQ 1100
Query: 293 R 293
R
Sbjct: 1101 R 1101
>gi|293334819|ref|NP_001169528.1| uncharacterized protein LOC100383402 [Zea mays]
gi|224029901|gb|ACN34026.1| unknown [Zea mays]
gi|414886336|tpg|DAA62350.1| TPA: hypothetical protein ZEAMMB73_316768 [Zea mays]
Length = 638
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RRN + F+ ++E L LG+P L EAEA CA LN E C ++DSD FLFG
Sbjct: 120 RRN--AAFTRCVEECVELLEYLGMPVLRAKGEAEALCAQLNNEGHVGACITADSDAFLFG 177
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESAC 169
A+TV + + + CY + DIE LG R L+ +ALL+GSD+ GV G G E+A
Sbjct: 178 AKTVVKVLRSNCKEPFECYHIADIESGLGLKRKQLVAMALLIGSDHDLHGVPGFGLETAL 237
Query: 170 QIVKSVGDNVVLQRIASEG 188
+ V+ ++ +L ++ G
Sbjct: 238 RFVQLFDEDEILDKLHEIG 256
>gi|145546103|ref|XP_001458735.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426556|emb|CAK91338.1| unnamed protein product [Paramecium tetraurelia]
Length = 872
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L D + DSD+FLFGA V + + + +V Y+
Sbjct: 572 FGIPWIIAPGEAEAQCAYLQQNGLVDCVITEDSDVFLFGATKVLKG-FFESKTSLVYYDT 630
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV-VLQRIAS 186
I+ LG R+ LI LAL LGSDY+ G++G+G +A +IV+ V DNV L+R S
Sbjct: 631 QYIKEDLGLNRDQLIYLALFLGSDYTLGIKGVGIVNAMEIVE-VFDNVEALKRFTS 685
>gi|405117687|gb|AFR92462.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. grubii H99]
Length = 1222
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L L DG + DSD+FLFG +++I+ + YV C+ +
Sbjct: 841 FGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGGQCFKNIF-NDAKYVECFLL 899
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
D+ER+L R LI+LA LGSDY+ G+ G+GP +I+
Sbjct: 900 ADVERELMLTRERLISLAYFLGSDYTLGLPGVGPVMGLEIL 940
>gi|82914773|ref|XP_728841.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485391|gb|EAA20406.1| XPG I-region, putative [Plasmodium yoelii yoelii]
Length = 1274
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M ++ K L G+P ++ EAEAQCA LN + CD S DSD+ +F +T+ ++ +
Sbjct: 929 MNEDIKLLLDLFGIPYIQSPCEAEAQCAYLNNNNYCDAIISDDSDVIVFSGKTIIKN-FF 987
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
++ V YE + IERKLG ++ LI +++L G DY+ GV G+G +A +I+K+
Sbjct: 988 NKKKTVEVYEKNLIERKLGLYQDDLINISMLCGCDYTIGVHGVGIVNALEIIKA 1041
>gi|326433004|gb|EGD78574.1| xeroderma pigmentosum group G complementing factor [Salpingoeca sp.
ATCC 50818]
Length = 1980
Score = 90.1 bits (222), Expect = 2e-15, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 111/248 (44%), Gaps = 45/248 (18%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + L G P + +EAE+QCA L + L G + DSD+FLFG R VYR +
Sbjct: 1171 MIVDVQHLLRLFGCPYVIAPQEAESQCAQLEQQGLVSGVITDDSDVFLFGGRRVYRHV-C 1229
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG---- 176
++ + Y DD+E G R+SLI LA LLGSDY+ GV G+GP +A +++
Sbjct: 1230 SQKKDMQLYLADDLENLAGLDRSSLIDLAYLLGSDYTPGVAGIGPVTAVEVISEFHNADS 1289
Query: 177 ------DNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
D V+ G+ + R +N+ +F + L R
Sbjct: 1290 TLHDFRDWVLNPDAPRVGVRSIDRLRNTIALHPAFP------------------NPLVRR 1331
Query: 231 TPFSQVIDAYSNPKCY-SADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 289
+ V+DA P + S D + + R +A+ L W + D+YILP
Sbjct: 1332 AYLAPVVDADDQPFTWASIDLDGLRRFVAEKL--------------GWERHRADDYILPL 1377
Query: 290 I-AERDLR 296
+ RD R
Sbjct: 1378 VQPARDAR 1385
>gi|229577369|ref|NP_001153363.1| mutagen-sensitive 201 [Nasonia vitripennis]
Length = 1167
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EA+ L GVP + EAEAQCA L L DG + DSDI+LFG VY++ + +
Sbjct: 777 EAQELLRLFGVPYIVAPMEAEAQCAYLEQIKLTDGTITDDSDIWLFGGHCVYKNFFDNNK 836
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
V+ + DIE R +I LALL+GSDY+ G+ G+GP +A +I+
Sbjct: 837 -RVLQFLSQDIEHHFKLSRREMIQLALLVGSDYTNGLAGVGPVTALEIL 884
>gi|414590012|tpg|DAA40583.1| TPA: hypothetical protein ZEAMMB73_816984 [Zea mays]
Length = 636
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
+RN + F+ ++E L LG+P L EAEA CA LN E D C ++DSD FL+G
Sbjct: 120 KRN--AAFTRAVEECVELLEYLGMPVLRANGEAEALCAQLNSEGHVDACITADSDAFLYG 177
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESAC 169
A+TV + + + CY + DIE LG R ++ +ALL+GSD+ GV G G E+A
Sbjct: 178 AKTVVKVLRSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHDLHGVPGFGLETAL 237
Query: 170 QIVKSVGDNVVLQRIASEG 188
+ V+ ++ +L ++ G
Sbjct: 238 RFVQLFDEDEILDKLHEIG 256
>gi|384249049|gb|EIE22531.1| hypothetical protein COCSUDRAFT_6698, partial [Coccomyxa
subellipsoidea C-169]
Length = 262
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA L+ L DG + D+D+FLFGA+ VYR I R YV Y
Sbjct: 12 FGLPYIIAPSEAEAQCAWLDANGLVDGVVTDDNDVFLFGAKHVYRHI-FENRKYVEEYRT 70
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR-----IAS 186
+D+ER+LG ++ LI LALLLGSDY++GV G+G +A + VK+ L++ +
Sbjct: 71 EDVERELGLDQDGLIALALLLGSDYTEGVAGIGIVNAIETVKAFQKEDGLRKFREWVMNP 130
Query: 187 EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCY 246
+ + + + ++ E + NV + L P +VI+AY K
Sbjct: 131 DEAELLAAQEADPPDPYAGDDPEIAEYKRKHRNVR-KNWELPASFPDIRVIEAYR--KAS 187
Query: 247 SADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR----- 296
DS + F H R L C + F W +K DE + P + D R
Sbjct: 188 VDDS--------KERFTHGRPDAQLLRAFCKEKFNWNADKVDEILEPVLKAYDARQAQLT 239
Query: 297 ---------RFANLRANTLALGV 310
RFA +++ LA V
Sbjct: 240 MDNFLSFNERFAKIKSKRLAKAV 262
>gi|410912947|ref|XP_003969950.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Takifugu rubripes]
Length = 875
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP L EAEAQCA L+ + G + DSD++LFG R VY++ +
Sbjct: 474 MYLESQELLQLFGVPFLVAPMEAEAQCAALDRDDHTHGTITDDSDVWLFGGRHVYKN-FF 532
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ YV ++ D++ LG R LI LA LLGSDY++GV G+G + +++
Sbjct: 533 SQNKYVEYFQYSDLQNVLGLDRAKLINLAYLLGSDYTEGVAGVGYVTGMEVL 584
>gi|221113045|ref|XP_002168588.1| PREDICTED: flap endonuclease GEN homolog 1-like [Hydra
magnipapillata]
Length = 299
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 7 YSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAK 66
+ L+ + G P +K +T R R Q L S++ RN F +I E
Sbjct: 63 FGVKLIIVIEGKAPDLKQNTMRYR-----NFCQYGVKLGTASTVGRN---RFQALILECC 114
Query: 67 ALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYV 126
L LG+P + EAE CA LN + + DGC ++D D FL+G + +YRD +
Sbjct: 115 ELLDLLGIPYIRATGEAEQMCAFLNSKKISDGCLTNDGDFFLYGGKCIYRDFSADPKNPC 174
Query: 127 V-CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV--KSVGDNVVLQ 182
V Y + I+ K+G R+ +I +ALL G DY +GV G+G + + KS +N++++
Sbjct: 175 VSTYTQEKIKDKIGITRHDMIGIALLCGCDYIKGVSGIGKSLVSKFISEKSFKENLLVR 233
>gi|47230549|emb|CAF99742.1| unnamed protein product [Tetraodon nigroviridis]
Length = 866
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Query: 35 SEVTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLE 93
S + + +L ++ + M S + M E++ L GVP L EAEAQCA L+
Sbjct: 646 SSLQAEQNSLKELQQQQERMASTVTGQMYLESQELLRLFGVPFLIAPMEAEAQCAALDRA 705
Query: 94 SLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 153
G + DSD++LFG R VY++ + + YV ++ D++ LG R LI LA LLG
Sbjct: 706 DHTHGTITDDSDVWLFGGRHVYKN-FFSQNKYVEYFQYSDLQNALGLDRTKLINLAYLLG 764
Query: 154 SDYSQGVRGLG 164
SDY++GV G+G
Sbjct: 765 SDYTEGVAGVG 775
>gi|124800975|ref|XP_001349570.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
gi|3845138|gb|AAC71842.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
Length = 1516
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M + K L G+P ++ EAEAQC+ LN ++ CD S DSD+ +F +TV ++ +
Sbjct: 1211 MNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKN-FF 1269
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
++ V YE IE KLG + LI ++LL G DY+ GV G+G +A +I+K+
Sbjct: 1270 NKKKTVEVYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEIIKA 1323
>gi|321465723|gb|EFX76723.1| hypothetical protein DAPPUDRAFT_33887 [Daphnia pulex]
Length = 231
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 15 LNGSIPAIKLSTYRRRLNS--GSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 72
L G P +K ++R + GS ++ S+ R S + + +E L +L
Sbjct: 21 LEGKAPELKAQVMQKRREARFGSNQPATSESATSKSTGR----SRYKYIQQECTELLTAL 76
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC--YE 130
GV + + EAEA CA LN + + +GC + D D FL+GA+TVYR++ + VC Y
Sbjct: 77 GVVTITSMGEAEAACAGLNHQGVVEGCITIDGDAFLYGAKTVYRNLSTDIHNF-VCQEYS 135
Query: 131 MDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSV 175
MD IE +L R+ LI +A+L G DY GV G+G ESA +++ ++
Sbjct: 136 MDVIETRLNLSRDKLIAMAILFGCDYLPDGVPGVGKESALRVISTI 181
>gi|406697519|gb|EKD00778.1| single-stranded DNA specific endodeoxyribonuclease [Trichosporon
asahii var. asahii CBS 8904]
Length = 1166
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
M+ + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I+
Sbjct: 800 AMVVQIQTLLRHFGIPYITAPMEAEAQCAKLAELGLVDGIITDDSDVFLFGGTQCFKNIF 859
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ + C D+ER+L R LI+L+ LLGSDY+ G+ G+GP A +++
Sbjct: 860 -NDNKFAECILATDVERELSLTRERLISLSYLLGSDYTIGLPGIGPVLALELL 911
>gi|358341292|dbj|GAA49005.1| DNA excision repair protein ERCC-5 [Clonorchis sinensis]
Length = 1013
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
DD D+ L R + ++EA+ L G+P + EEAEAQC L L D
Sbjct: 584 DDVLRDQADRLTRQAQTTTQRCVEEAQNLLQLFGMPFIVSPEEAEAQCVALQQSGLVDLV 643
Query: 100 FSSDSDIFLFGARTVYRDIWLGERGYVVC--------------YEMDDIERKLGFGRNSL 145
S DSD++ FGAR V R ++ G G V Y +DD++R +G ++
Sbjct: 644 ASDDSDVWPFGARLVCRHLFAG--GAVDTKPKVTRKAPRVPSQYTLDDVQRTVGLNTMNI 701
Query: 146 ITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
+ LALL GSDY+ GV+ +GP +A +I+ G+
Sbjct: 702 LRLALLCGSDYTPGVQNVGPVTAVEILNEFGE 733
>gi|156045904|ref|XP_001589507.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980]
gi|154693624|gb|EDN93362.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1188
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 8/148 (5%)
Query: 18 SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR------RNMGSEFS-CMIKEAKALGL 70
+I A + + + LN+ SE D ++ +LR R E S MI E +AL
Sbjct: 838 AIEAEEHARFASTLNNKSEKENHDSYEKELKALRSQQKKDRRDADEVSHIMITECQALLR 897
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
G+P + EAEAQCA L L DG + DSDIFLFG VY++++ + V CY
Sbjct: 898 LFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDIFLFGGTRVYKNLFNSNK-LVECYL 956
Query: 131 MDDIERKLGFGRNSLITLALLLGSDYSQ 158
+ D+E++L R+ LI++A LLGSDY++
Sbjct: 957 LSDLEKELSLSRDQLISIAHLLGSDYTE 984
>gi|195559286|ref|XP_002077347.1| GD20054 [Drosophila simulans]
gi|194202449|gb|EDX16025.1| GD20054 [Drosophila simulans]
Length = 259
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + +V+ +
Sbjct: 20 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNF-FAQNKHVMEFRA 78
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 79 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 121
>gi|427786261|gb|JAA58582.1| Putative xp-g/rad2 dna repair endonuclease [Rhipicephalus
pulchellus]
Length = 778
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLG 153
+ DGC + D D FL+GA+TVYR + + ++ +V+ Y++ DIE KLG R L+ LA+L G
Sbjct: 1 MVDGCITQDGDAFLYGAKTVYRKLCVEDKDPHVLSYKISDIESKLGLDREKLVALAVLAG 60
Query: 154 SDYSQGVRGLGPESACQIVKSVGDNVVLQRI 184
DY GVR +G E+A +++ GD+ L+R+
Sbjct: 61 CDYFSGVRNVGKETAIKLLNKFGDSGSLERL 91
>gi|187608436|ref|NP_001120251.1| Gen endonuclease homolog 1 [Xenopus (Silurana) tropicalis]
gi|169641850|gb|AAI60467.1| LOC100145302 protein [Xenopus (Silurana) tropicalis]
Length = 219
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D+FL+GA+T Y
Sbjct: 108 SYFKSVLKECLLMLECLGIPWVQAAGEAEAMCAYLNAHGYVDGCITNDGDVFLYGAQTFY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + + +V CYE+ I+ +LG R L+ LA+LLG DY
Sbjct: 168 RNFTMNVKDPHVDCYEVSKIKAQLGLDREELVGLAILLGCDY 209
>gi|221487998|gb|EEE26212.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 2004
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
L++ G+ M + AL + GVP + EAEA A L ++L D S DSD +F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
GAR +YR+ + ++ V YE I KLG G+ LI LA+LLG DY+ GV+G+G +A
Sbjct: 1474 GAREIYRNFFENKK-SVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAV 1532
Query: 170 QIVKS 174
+++++
Sbjct: 1533 EVLRA 1537
>gi|237832503|ref|XP_002365549.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
gi|211963213|gb|EEA98408.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
Length = 2004
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
L++ G+ M + AL + GVP + EAEA A L ++L D S DSD +F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
GAR +YR+ + ++ V YE I KLG G+ LI LA+LLG DY+ GV+G+G +A
Sbjct: 1474 GAREIYRNFFENKK-SVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAV 1532
Query: 170 QIVKS 174
+++++
Sbjct: 1533 EVLRA 1537
>gi|221508520|gb|EEE34089.1| DNA-repair protein xp-G, putative [Toxoplasma gondii VEG]
Length = 2004
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
L++ G+ M + AL + GVP + EAEA A L ++L D S DSD +F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
GAR +YR+ + ++ V YE I KLG G+ LI LA+LLG DY+ GV+G+G +A
Sbjct: 1474 GAREIYRNFFENKK-SVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAV 1532
Query: 170 QIVKS 174
+++++
Sbjct: 1533 EVLRA 1537
>gi|256052789|ref|XP_002569934.1| xp-G/rad2 DNA repair endonuclease family member [Schistosoma
mansoni]
Length = 828
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 15/167 (8%)
Query: 15 LNGSIPAIKLSTYRRRLN--SGSEVTQD--DKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+G P++K ++R +G TQ NL+++ FS + +E L
Sbjct: 70 LDGVAPSLKSDVMKQRQQKWTGKITTQKCTKPNLNRI---------RFSKVSQECIQLLN 120
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC-Y 129
S G+P ++ EAEA CA LN L D C ++D D FL+GA TVYR + R VC +
Sbjct: 121 SFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDAFLYGAETVYRHFSMDSRDSSVCVF 180
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSV 175
M I L + L+ L +LLG DY + GV LGP A +++ S+
Sbjct: 181 HMHRILDVLNLTKCDLVLLGILLGCDYWASGVSRLGPVGALRLISSL 227
>gi|405964237|gb|EKC29743.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 417
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 10/108 (9%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV-CYE 130
LG+PC++ EAEA CA L+ L DG +SDSD L+GART Y V YE
Sbjct: 55 LGLPCIKAPGEAEAYCAWLDENGLVDGVLTSDSDALLYGARTF---------DYAVDLYE 105
Query: 131 MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
M IE +LG R +L+ +A+L+G DY +G+R +G E A ++ + + N
Sbjct: 106 MSVIEERLGMTRETLVAMAMLVGCDYDEGIRDIGIEKAQELFRELRSN 153
>gi|221053197|ref|XP_002257973.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
gi|193807805|emb|CAQ38510.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
Length = 1431
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M ++ K L G+P ++ EAEAQC+ LN ++ CD S DSD+ +F +TV ++ +
Sbjct: 1103 MNEDIKILLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKN-FF 1161
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
++ V YE IE KLG ++ LI L+LL G DY+ GV G+G +A +I+K+
Sbjct: 1162 NKKKTVEVYERKLIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKA 1215
>gi|390371157|dbj|GAB65038.1| DNA repair endonuclease [Plasmodium cynomolgi strain B]
Length = 1505
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P ++ EAEAQC+ LN ++ CD S DSD+ +F +TV ++ + + V YE
Sbjct: 1179 FGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKN-FFNRKKTVEVYER 1237
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
IE KLG ++ LI L+LL G DY+ GV G+G +A +I+K+
Sbjct: 1238 KHIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKA 1280
>gi|449330042|gb|AGE96307.1| DNA repair protein rad2 [Encephalitozoon cuniculi]
Length = 562
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 57 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 116
E S ++ K++ +P ++ EA+ QC + ++ DG + D+D+ L+G TVYR
Sbjct: 384 EISRVLGLVKSVLEVFNIPYVDAPMEADGQCGFMCHNNVVDGVITEDNDVLLYGG-TVYR 442
Query: 117 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK--S 174
+ + +R + Y +D IER+L R +LITL+ LLGSDY+ GV+G+GP A + ++ S
Sbjct: 443 NFFRKDR-EIEKYSLDRIERELQLDRKNLITLSYLLGSDYTDGVKGIGPVKALEAIRKGS 501
Query: 175 VGD 177
VG+
Sbjct: 502 VGE 504
>gi|346467817|gb|AEO33753.1| hypothetical protein [Amblyomma maculatum]
Length = 266
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI-WLG 121
KE K L LG+PC + +AE+ CA LN + DGC + SD FL+GA+TVYR
Sbjct: 67 KERKTLVDILGLPCCQIDRKAESVCAFLNEKGTVDGCITEGSDAFLYGAQTVYRKFNIEE 126
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
E + Y + DIE+K R LI L +L+GSD G+ G+G +A Q++K GD+ +
Sbjct: 127 EDPEIDEYNISDIEKKADLNRKKLIALNMLVGSD---GIPGVGMVTAGQLLKEFGDDDPI 183
Query: 182 QRI 184
+R+
Sbjct: 184 KRL 186
>gi|402224833|gb|EJU04895.1| hypothetical protein DACRYDRAFT_104789 [Dacryopinax sp. DJM-731 SS1]
Length = 1334
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI + + + G+P EAEAQCA L L +G + DSD+FLFG V+++++
Sbjct: 972 MITQIQNMLRLFGIPYTVAPMEAEAQCAELVQLGLVEGIITDDSDVFLFGGLRVFKNMF- 1030
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V C+ + D+ R+L R+ LI LA LLGSDY G+ +GP A ++++
Sbjct: 1031 NQSKTVECFLLSDLGRELSLDRDKLIRLAYLLGSDYVDGLPKVGPVVAMELLREFPGEDG 1090
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L + E V+ K+ K + ++ D L + P S V DAY
Sbjct: 1091 LHKF-KEWWVKVQSGKD--------KPADNATPFRRKFKKRYKDLYLPVDWPNSNVRDAY 1141
Query: 241 SNPKC 245
S+P
Sbjct: 1142 SHPTV 1146
>gi|424513647|emb|CCO66269.1| DNA excision repair protein Rad2 [Bathycoccus prasinos]
Length = 1311
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E + L + LG+P + EEAEA+CA LN DG F++DSD+FLFGA V+R+ +
Sbjct: 874 MYREVQELLMLLGIPYVVAPEEAEAECAHLNRTGKVDGVFTNDSDVFLFGATLVFRNAFE 933
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
+ + Y+ IE++LG R +I LA+LLGSDY+ G+ G+G +A +++ D
Sbjct: 934 NTKA-IQMYKSSRIEKQLGLNRERMIQLAMLLGSDYTVGIDGIGIVNAMEVLAGFSD 989
>gi|85014439|ref|XP_955715.1| DNA repair protein [Encephalitozoon cuniculi GB-M1]
gi|19171409|emb|CAD27134.1| similarity to DNA repair protein RAD2 (fragment) [Encephalitozoon
cuniculi GB-M1]
Length = 562
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 57 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 116
E S ++ K++ +P ++ EA+ QC + ++ DG + D+D+ L+G TVYR
Sbjct: 384 EISRVLGLVKSVLEVFNIPYVDAPMEADGQCGFMCHNNVVDGVITEDNDVLLYGG-TVYR 442
Query: 117 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK--S 174
+ + +R + Y +D IER+L R +LITL+ LLGSDY+ GV+G+GP A + ++ S
Sbjct: 443 NFFRKDR-EIEKYSLDRIERELQLDRKNLITLSYLLGSDYTDGVKGIGPVKALEAIRKGS 501
Query: 175 VGD 177
VG+
Sbjct: 502 VGE 504
>gi|47201249|emb|CAF87424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 175
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP L EAEAQCA L+ G + DSD++LFG R VY++ + + YV ++
Sbjct: 62 FGVPFLIAPMEAEAQCAALDRADQTHGTITDDSDVWLFGGRHVYKN-FFSQNKYVEYFQY 120
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
D++ LG R LI LA LLGSDY++GV G+G + +++
Sbjct: 121 SDLQNALGLDRTKLINLAYLLGSDYTEGVAGVGYVTGMEVL 161
>gi|281212257|gb|EFA86417.1| xeroderma pigmentosum group G family protein [Polysphondylium
pallidum PN500]
Length = 1515
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART---VYRD 117
+++E L G+P + EAEAQCA L L DG + DSD LFG + VYR
Sbjct: 1002 ILRECHDLLSLFGIPFITSPTEAEAQCAELFALGLIDGVVTEDSDTLLFGKSSDMVVYRH 1061
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
++ Y C M DIE+ +G R+ LI LA+LLG DY+ GV+G+G +A +I+
Sbjct: 1062 LFQQPEKY--C--MSDIEKTIGVNRDDLINLAMLLGCDYTAGVKGIGIVNAMEII 1112
>gi|67589751|ref|XP_665434.1| RAD2 [Cryptosporidium hominis TU502]
gi|54656123|gb|EAL35205.1| RAD2 [Cryptosporidium hominis]
Length = 1158
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
+LG+P ++ EAEAQ ++L ++C G S DSD +FGA+ ++R+ + G V Y+
Sbjct: 900 ALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSG--NSVEMYD 957
Query: 131 MDDIERKLGFGRN-SLITLALLLGSDYSQGVRGLGPESACQIVKS 174
++ +++ LG + LA+LLG DY+ GV G+GP +A +++K+
Sbjct: 958 LNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKA 1002
>gi|34558672|gb|AAQ75078.1| RAD2 [Cryptosporidium parvum]
Length = 1147
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
+LG+P ++ EAEAQ ++L ++C G S DSD +FGA+ ++R+ + G V Y+
Sbjct: 889 ALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSG--NSVEMYD 946
Query: 131 MDDIERKLGFGRN-SLITLALLLGSDYSQGVRGLGPESACQIVKS 174
++ +++ LG + LA+LLG DY+ GV G+GP +A +++K+
Sbjct: 947 LNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKA 991
>gi|66356946|ref|XP_625651.1| XPG, DNA excision repair protein, flap endonuclease
[Cryptosporidium parvum Iowa II]
gi|46226699|gb|EAK87678.1| XPG, DNA excision repair protein, flap endonuclease
[Cryptosporidium parvum Iowa II]
Length = 1147
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
+LG+P ++ EAEAQ ++L ++C G S DSD +FGA+ ++R+ + G V Y+
Sbjct: 889 ALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSG--NSVEMYD 946
Query: 131 MDDIERKLGFGRN-SLITLALLLGSDYSQGVRGLGPESACQIVKS 174
++ +++ LG + LA+LLG DY+ GV G+GP +A +++K+
Sbjct: 947 LNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKA 991
>gi|374632950|ref|ZP_09705317.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373524434|gb|EHP69311.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 301
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 18/178 (10%)
Query: 15 LNGSIPAIKLSTY--RRRLNSGSEVTQ-DDKNLDKMSSLRR--NMGSEFS-CMIKEAKAL 68
+G P +K+ RRRL +E K L K+ +R+ M S + M +E+K L
Sbjct: 32 FDGKPPELKMEELENRRRLKEEAERKLVKAKELGKLEEMRKYSQMSSRLTKGMAEESKEL 91
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-GERG--- 124
+GVP + E EA+ A LN +++ S D D LFGA+ + R++ + G+R
Sbjct: 92 LSRMGVPIVNAPSEGEAEAAYLNYKNITFAAASQDYDSLLFGAKRLIRNLTITGKRKLPN 151
Query: 125 ---YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
YV E+D++ RKLG R LI +A+L+G+DY+ G++G+GP++A +++++
Sbjct: 152 KDVYVEIKPEMIELDELLRKLGLTREQLIDVAILIGTDYNPDGIKGIGPKTAYKLIRT 209
>gi|312375261|gb|EFR22667.1| hypothetical protein AND_14372 [Anopheles darlingi]
Length = 738
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 10/159 (6%)
Query: 33 SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 92
+G+ T +K K + +RN F ++K+ + L ++G+ C++ EAEA CA LN
Sbjct: 98 AGATATAVEKASSKPTEQKRN---RFHHVLKQCEELLSAMGLVCVQAPGEAEALCAYLNR 154
Query: 93 ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERK----LGFGRNSLITL 148
++L DG S DSD F +GA V+R+ + G V ++ D+ER L G+ ++ +
Sbjct: 155 DALIDGVISQDSDCFAYGAVRVFRNFCASQNGGSV--DVYDLERANSAGLRLGQEKIVAM 212
Query: 149 ALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIAS 186
ALL G DY GV G+G E +++ + +LQRI S
Sbjct: 213 ALLSGCDYCPAGVAGVGREMVTRLLNCYDNETILQRIRS 251
>gi|156093896|ref|XP_001612986.1| DNA repair endonuclease [Plasmodium vivax Sal-1]
gi|148801860|gb|EDL43259.1| DNA repair endonuclease, putative [Plasmodium vivax]
Length = 1473
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M ++ K L G+P ++ EAEAQC+ LN ++ CD S DSD+ +F +TV ++ +
Sbjct: 1134 MNEDIKILLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKN-FF 1192
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ V YE IE KLG ++ LI L+LL G DY+ GV G+G +A +I+K+
Sbjct: 1193 NRKKTVEVYERKLIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKA 1246
>gi|195441676|ref|XP_002068629.1| GK20322 [Drosophila willistoni]
gi|194164714|gb|EDW79615.1| GK20322 [Drosophila willistoni]
Length = 722
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 13/132 (9%)
Query: 32 NSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLN 91
+SGS + +N DK R + F+ ++K+ + L +S+G+ C++G EAEA CA LN
Sbjct: 100 DSGSS---NKENTDKTKEKGR---TRFNHVLKQCENLLISMGIQCVQGPGEAEAYCAFLN 153
Query: 92 LESLCDGCFSSDSDIFLFGARTVYRDIWLG-------ERGYVVCYEMDDIERKLGFGRNS 144
L DG S DSD F +GA VYR+ + G V Y+M DI ++ FG+N
Sbjct: 154 KHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMRDICSRIDFGQNK 213
Query: 145 LITLALLLGSDY 156
+I +ALL G DY
Sbjct: 214 IIVMALLCGCDY 225
>gi|195014132|ref|XP_001983964.1| GH15274 [Drosophila grimshawi]
gi|193897446|gb|EDV96312.1| GH15274 [Drosophila grimshawi]
Length = 749
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 14/156 (8%)
Query: 15 LNGSIPAIKLSTYRRRLN-SGSEVTQDDKNLD-----KMSSLRRNMG-SEFSCMIKEAKA 67
L G P +K +R V DK+ D K ++L + G + F+ ++K+ +
Sbjct: 73 LEGVAPKLKSQVIAKRNELQFRGVRPKDKDKDAQAPPKQAALNGDKGRTRFNNVLKQCEN 132
Query: 68 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG------ 121
L LS+G+ C++G EAEA CA LN L DG S DSD F +GAR VYR+ +
Sbjct: 133 LLLSMGIQCVQGPGEAEAYCAFLNKYGLVDGVISQDSDCFAYGARRVYRNFSVSTQGAQA 192
Query: 122 -ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 193 AAGGAVDIYDMQEICTRIDFGQQKVIVMALLCGCDY 228
>gi|168064381|ref|XP_001784141.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664341|gb|EDQ51065.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 435
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Query: 15 LNGSIPAIKLSTYRRRLN--SGSEVTQDDKN-LDKMSSLRRNMGSEFSCMIKEAKALGLS 71
++G+ P KL+ RL S S + + + + S++ N G F I E L
Sbjct: 74 VDGTFPPEKLAVRMERLTLMSTSNILPNPQEFVTGESNIACNNG--FQRRIDECVELLEL 131
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV-CYE 130
LG+P L EAE CA L+ + L D C ++DSD FL GAR V + + + + ++ Y+
Sbjct: 132 LGMPVLHAAWEAEGLCAELDRDGLVDACVTADSDAFLHGARCVIKVLQMDSKVPIIETYD 191
Query: 131 MDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVL 181
+DI+ LG R +I LALL+G DY+ +GV G+G A ++V+SV N V
Sbjct: 192 AEDIKTILGLDREHMIALALLMGCDYNKKGVVGIGCNRAIRLVRSVSSNKVF 243
>gi|24658219|ref|NP_647943.2| XPG-like endonuclease [Drosophila melanogaster]
gi|74870583|sp|Q9VRJ0.1|GEN_DROME RecName: Full=Flap endonuclease GEN; AltName: Full=Flap
structure-specific endonuclease GEN; AltName:
Full=Xpg-like endonuclease; Short=DmGEN
gi|7295491|gb|AAF50805.1| XPG-like endonuclease [Drosophila melanogaster]
gi|21711755|gb|AAM75068.1| RE33588p [Drosophila melanogaster]
gi|220949066|gb|ACL87076.1| Gen-PA [synthetic construct]
Length = 726
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 117 SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVY 176
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 177 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|5679043|gb|AAD46833.1|AF160893_1 GM10765p [Drosophila melanogaster]
gi|28460669|dbj|BAC57447.1| xpg like endonuclease [Drosophila melanogaster]
Length = 726
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 117 SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVY 176
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 177 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|195587930|ref|XP_002083714.1| GD13208 [Drosophila simulans]
gi|194195723|gb|EDX09299.1| GD13208 [Drosophila simulans]
Length = 726
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 117 SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVY 176
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 177 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member
[Schistosoma mansoni]
Length = 293
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 15/167 (8%)
Query: 15 LNGSIPAIKLSTYRRRLN--SGSEVTQ--DDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+G P++K ++R +G TQ NL+++ FS + +E L
Sbjct: 70 LDGVAPSLKSDVMKQRQQKWTGKITTQKCTKPNLNRI---------RFSKVSQECIQLLN 120
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC-Y 129
S G+P ++ EAEA CA LN L D C ++D D FL+GA TVYR + R VC +
Sbjct: 121 SFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDAFLYGAETVYRHFSMDSRDSSVCVF 180
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSV 175
M I L + L+ L +LLG DY + GV LGP A +++ S+
Sbjct: 181 HMHRILDVLNLTKCDLVLLGILLGCDYWASGVSRLGPVGALRLISSL 227
>gi|195127377|ref|XP_002008145.1| GI11983 [Drosophila mojavensis]
gi|193919754|gb|EDW18621.1| GI11983 [Drosophila mojavensis]
Length = 751
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
+ F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 122 TRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVY 181
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I + FG+N +I +ALL G DY
Sbjct: 182 RNFSVSTQGAQAAAGGAVDIYDMQEICNHMDFGQNKVIVMALLCGCDY 229
>gi|401409161|ref|XP_003884029.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
gi|325118446|emb|CBZ53997.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
Length = 1924
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
L++ G+ M + AL + GVP + EAEA A ++L D S DSD +F
Sbjct: 1420 LQQQTGNVTERMKDQVVALLRAFGVPFVTAPGEAEATAAYFTAQNLADAVISDDSDALVF 1479
Query: 110 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
GAR +YR+ + ++ V YE I KLG + LI LA+LLG DY+ GV+G+G +A
Sbjct: 1480 GAREIYRNFFENKK-SVEMYEASFIAHKLGLDQQQLILLAMLLGCDYTLGVKGIGIVNAV 1538
Query: 170 QIVKS 174
+++++
Sbjct: 1539 EVLRA 1543
>gi|194866945|ref|XP_001971974.1| GG14140 [Drosophila erecta]
gi|190653757|gb|EDV51000.1| GG14140 [Drosophila erecta]
Length = 726
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 117 SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAIRVY 176
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 177 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|195337621|ref|XP_002035427.1| GM13928 [Drosophila sechellia]
gi|194128520|gb|EDW50563.1| GM13928 [Drosophila sechellia]
Length = 726
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 117 SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVY 176
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 177 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|195491935|ref|XP_002093778.1| GE20569 [Drosophila yakuba]
gi|194179879|gb|EDW93490.1| GE20569 [Drosophila yakuba]
Length = 727
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 117 SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAIRVY 176
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 177 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|194750279|ref|XP_001957555.1| GF10471 [Drosophila ananassae]
gi|190624837|gb|EDV40361.1| GF10471 [Drosophila ananassae]
Length = 734
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
+ F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 119 TRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVY 178
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 179 RNFSVSTQGAQAAAGGAVDIYDMREITTRMDFGQHKIIVMALLCGCDY 226
>gi|170041796|ref|XP_001848636.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865395|gb|EDS28778.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 724
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 5/154 (3%)
Query: 33 SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 92
+G + + D+ + +RN F ++K+ + L S+G+ C++ EAEA CA LN
Sbjct: 109 TGGDKRKQDEPGKRAPEQKRN---RFHHVLKQCEELLSSMGLVCVQAPGEAEALCAHLNR 165
Query: 93 ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV-CYEMDDIERKLGFGRNSLITLALL 151
E+L G S DSD F +G VYR+ + G V Y++++I R + G+ ++ + +L
Sbjct: 166 ENLVHGIISQDSDCFAYGGVRVYRNFCASQNGGSVEIYDLENIRRVMDLGQEKIVVMGIL 225
Query: 152 LGSDYS-QGVRGLGPESACQIVKSVGDNVVLQRI 184
G DYS GV G+G E ++++S +L RI
Sbjct: 226 SGCDYSPAGVPGVGRELVHRLIRSYPSWEILDRI 259
>gi|328865755|gb|EGG14141.1| hypothetical protein DFA_11908 [Dictyostelium fasciculatum]
Length = 1098
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 46 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 105
K+S+ R++ S + ++KE L G+P + EAE+QCA L DG + DSD
Sbjct: 771 KISNQIRSVHSITNDILKECHELLSMFGIPFITSPTEAESQCAELYNLGFVDGVVTDDSD 830
Query: 106 IFLFGAR---TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 162
I LF ++ VYR+++ + Y+ +I+R +G R LI+LALLLG DY+ GV G
Sbjct: 831 ILLFASQPDMAVYRNLFQHDPQK---YQPKEIKRLMGLERQDLISLALLLGCDYTPGVHG 887
Query: 163 LGPESACQIV 172
+G +A +I+
Sbjct: 888 IGIVNAMEIL 897
>gi|256070941|ref|XP_002571800.1| xp-G/rad2 DNA repair endonuclease family [Schistosoma mansoni]
gi|353228641|emb|CCD74812.1| putative xp-G/rad2 DNA repair endonuclease family [Schistosoma
mansoni]
Length = 991
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
+K L R S + I EA+ L G P + EEAEAQC L L D S DS
Sbjct: 641 EKADRLTRQAQSTTTRCISEAQDLLHLFGFPFVVSPEEAEAQCVALQRHGLVDLVASDDS 700
Query: 105 DIFLFGARTVYRDIW-------LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
D++ FG + V R ++ L Y++D+++RKLG +++ L LL GSDY+
Sbjct: 701 DVWPFGVKLVCRHLFGTGGGDNLKSTTNPSIYKLDEVKRKLGLTIENILRLTLLCGSDYT 760
Query: 158 QGVRGLGPESACQIVK--SVGDN 178
G+ +GP +A +I+ VGD+
Sbjct: 761 HGIDQVGPVTAIEILSEFDVGDD 783
>gi|339259208|ref|XP_003369790.1| putative DNA-repair protein [Trichinella spiralis]
gi|316966016|gb|EFV50652.1| putative DNA-repair protein [Trichinella spiralis]
Length = 859
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 29/243 (11%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S ++ E + GVP ++ + EAEAQCA L + +G + DSDI+LFG + VYR++
Sbjct: 574 SQILDECEVFLRLFGVPIVKSLAEAEAQCAWLEQNQISEGTITDDSDIWLFGGQHVYRNL 633
Query: 119 WLGERGYVVCYEMDDIERK------------LGFGRNSLITLALLLGSDYSQGVRGLGPE 166
++ ++ V ++M+ I+ R I LA+L+G DYSQGV LG
Sbjct: 634 FV-KKKLVQYFDMNTIKELSSLINCIAHPVFSALNREKFILLAMLVGCDYSQGVENLGVV 692
Query: 167 SACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNKEESLNQEINVNGTDH 225
+A +I+ +SF + +++ G S F+ ++ + GT
Sbjct: 693 TALEIIAEFNSAAEQSTPIETLVSFRQWFQSAPLPGESTFRTRLRKLC----CHFPGT-- 746
Query: 226 SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEY 285
P V DA+ NPK +E +L + + + F W EKTD++
Sbjct: 747 -----FPDQCVYDAFLNPKVNHFHAED----FKWNLPDLDAIRRYAEENFNWSKEKTDQH 797
Query: 286 ILP 288
+LP
Sbjct: 798 LLP 800
>gi|157134745|ref|XP_001656421.1| hypothetical protein AaeL_AAEL000425 [Aedes aegypti]
gi|108884298|gb|EAT48523.1| AAEL000425-PA [Aedes aegypti]
Length = 744
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 153/394 (38%), Gaps = 66/394 (16%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDK--NLDKMSSLRRNMGSE-----------FSCM 61
L GS P +K +R + K N DK ++ G+E F +
Sbjct: 73 LEGSAPPLKYGVIIKRNQTQFRGVPPRKTANCDKAGGTQKPNGTESKAPSEQKRNRFHHV 132
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
+K+ + L S+G+ C++ EAEA CA LN + + G S DSD F +GA V+R+
Sbjct: 133 LKQCEELLSSMGLVCVQAPGEAEALCAYLNHDGMVYGVISQDSDCFAYGAVRVFRNFCAS 192
Query: 122 ER--GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDN 178
+ G V Y+MD I + G+ ++ + +L G DYS GV G+G E +++
Sbjct: 193 QSGGGSVDVYDMDKIRMVMDLGQEKIVAMGILSGCDYSPAGVPGVGREMINRLLNIYHSR 252
Query: 179 VVLQRIAS--------------------------EGLSFVKRAKNSKKEGWSFKCNNKEE 212
VL RI S +G +FV R + C+
Sbjct: 253 DVLARIRSWRATADRLTEQEIKAEDKNVCADCGHQGKTFVHRRAGCQDCRTKVGCDESRW 312
Query: 213 SLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR 266
NQ N+ T+ ++R+ P ++ + KC E L +
Sbjct: 313 K-NQRANIK-TELDIKRKALQDPDFPPEAIVSEFMERKC-----ELPPLDLEWRQPNIVK 365
Query: 267 LHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGI 326
+ A QW + + P L LR N P + + VK I
Sbjct: 366 FIRNIANLLQWNEIYSFIKLFPLFTRWQL---LTLRRN--------PSRGISVKLEPDYI 414
Query: 327 IKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 360
K R +G FE+ W++ + S +VP D +++
Sbjct: 415 KKKRSPKGVASFEIIWKDDGSIFSGLVPDDQLQA 448
>gi|195376315|ref|XP_002046942.1| GJ12207 [Drosophila virilis]
gi|194154100|gb|EDW69284.1| GJ12207 [Drosophila virilis]
Length = 747
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 15 LNGSIPAIKLSTYRRRLN---SGSEVTQDDKNLDKMSSLRRNMG-SEFSCMIKEAKALGL 70
L G P +K +R G D ++ +++ G + F+ ++K+ + L L
Sbjct: 73 LEGVAPKLKSQVIAKRNELQFRGVRPKDKDAPAPTQAAAKKDKGRTRFNHVLKQCENLLL 132
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-------ER 123
++G+ C++G EAEA CA LN L DG S DSD F +GA VYR+ +
Sbjct: 133 AMGIQCVQGPGEAEAYCAYLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAG 192
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
G V Y+M I + FG+N +I +ALL G DY
Sbjct: 193 GAVDIYDMQTICAHMDFGQNKVIVMALLCGCDY 225
>gi|159118360|ref|XP_001709399.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
gi|317374902|sp|A8B672.1|FEN1_GIAIC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157437515|gb|EDO81725.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
Length = 361
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 28 RRRLNSGSEVTQ----DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 83
RR+ +E+ Q ++ NL++ L R K+A+ L +LG+P + EA
Sbjct: 101 RRQAREAAELEQQKAEEEGNLERAKQLSRRTVKVTQQHCKQAERLLDTLGIPYVVAAGEA 160
Query: 84 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN 143
EAQC + E +C+G SSD D+ FG+ + R++ G +V ++ + ++LGF +
Sbjct: 161 EAQCVAMAKERVCEGVASSDLDVLAFGSPCLIRNLAQGGDREIVEINLNTVLKELGFSYD 220
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIV 172
+ L +L G DY+ + G+GP++A +++
Sbjct: 221 EFLDLCILCGCDYANSLEGIGPKTAYKLI 249
>gi|443691424|gb|ELT93282.1| hypothetical protein CAPTEDRAFT_209048 [Capitella teleta]
Length = 270
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 57 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 116
EFS ++E + L LG+P ++ EAEA C +LN + +G ++DSD FLFGA VY+
Sbjct: 102 EFSSKVREMQHLLDLLGIPSVQSSGEAEALCGVLNERGVVEGVITNDSDAFLFGATKVYK 161
Query: 117 DIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ + Y M ++ LG R L+ LALL G D++ G +G+G A +++K
Sbjct: 162 NFTANKAKESEQEVYRMKRLQGLLGADRKGLVALALLAGCDFTSGSQGVGSTGALKLLKH 221
Query: 175 VGDNV 179
G V
Sbjct: 222 WGPQV 226
>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
Ankara]
gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
Length = 899
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP + EAE+QCA +N C S DSD +FGA+ + ++ + ++ + + Y++
Sbjct: 599 FGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFY-NDKVFEL-YKL 656
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
D I R+LG GR L +A++ G DY+ GV+G+G +A +++K+
Sbjct: 657 DRIRRELGIGRKQLALIAIICGCDYTNGVKGIGIVNALEVIKA 699
>gi|390361636|ref|XP_793916.3| PREDICTED: flap endonuclease GEN homolog 1-like [Strongylocentrotus
purpuratus]
Length = 234
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154
+ DGC + D D FL+GAR VYR++ + G V CY MDDIE KL R L+ LA+LLG
Sbjct: 123 IVDGCMTEDGDAFLYGARIVYRNLNMAT-GKVDCYRMDDIETKLDLDRRRLVALAILLGC 181
Query: 155 DY-SQGVRGLGPESACQIVKSVGDNV 179
DY +GV G+G E A + +KS+ +V
Sbjct: 182 DYLPKGVPGVGKEVAMRFMKSLPSSV 207
>gi|195167797|ref|XP_002024719.1| GL22468 [Drosophila persimilis]
gi|194108124|gb|EDW30167.1| GL22468 [Drosophila persimilis]
Length = 754
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
+ F+ ++K+ + L LS+G+ C++G EAEA A LN L DG S DSD F +GA VY
Sbjct: 116 TRFNHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVY 175
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 176 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDY 223
>gi|403223884|dbj|BAM42014.1| uncharacterized protein TOT_040000390 [Theileria orientalis strain
Shintoku]
Length = 784
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
+ +AL GVP L EAE+QCA +N + C S DSD +FGAR + ++ +
Sbjct: 480 DTQALLELFGVPYLIAPSEAESQCAYMNKKGDCYAVISDDSDALVFGARCLLKNFY--ND 537
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
Y + I ++LG GR L +A++ G DY+ GVRG+G +A +++K+
Sbjct: 538 NVFELYTAERIRKELGIGRKQLALIAVICGCDYTNGVRGIGVVNALEVIKA 588
>gi|440492480|gb|ELQ75044.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 728
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 50/172 (29%)
Query: 45 DKMSSLRRN-------MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES--- 94
D+M+SL RN + +E C+ K + LG+P ++ E+++Q LN E
Sbjct: 492 DRMASLERNIRTRSINLMNELQCITVLMKKMLTILGIPYIDAPYESDSQLGYLNNECELE 551
Query: 95 ------------------------------LCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
D + D+D+FLFGA VY+D
Sbjct: 552 RNERKSVFNPEEKCEHLDTNQVFNDKIYNLKVDAIITEDNDVFLFGANRVYKD------- 604
Query: 125 YVVC---YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
Y C Y M +I KL R LI L++ LG+DY+ G RG+GP+ A +I+K
Sbjct: 605 YFKCPKLYTMQNIRDKLNLNREDLIKLSVFLGNDYTVGFRGIGPKKALEILK 656
>gi|125980514|ref|XP_001354281.1| GA10481 [Drosophila pseudoobscura pseudoobscura]
gi|121993075|sp|Q29FC1.1|GEN_DROPS RecName: Full=Flap endonuclease GEN; AltName: Full=Flap
structure-specific endonuclease GEN; AltName:
Full=Xpg-like endonuclease
gi|54642587|gb|EAL31334.1| GA10481 [Drosophila pseudoobscura pseudoobscura]
Length = 754
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
+ F+ ++K+ + L LS+G+ C++G EAEA A LN L DG S DSD F +GA VY
Sbjct: 116 TRFNHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVY 175
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 176 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDY 223
>gi|260825215|ref|XP_002607562.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
gi|229292910|gb|EEN63572.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
Length = 162
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA L+ +G + DSD++LFG R VY++ +
Sbjct: 37 MYVESQELLRLFGIPYVQSPTEAEAQCAFLDQSKQTEGTITDDSDVWLFGGRQVYKNFFS 96
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+R V ++ D+ +L R+ LI ALL GSDY++G++G+G A + V
Sbjct: 97 QQRDMEV-FKYKDVVSQLAMDRSRLINFALLTGSDYTEGIQGVGKVLAME---------V 146
Query: 181 LQRIASEGLS 190
LQ EG++
Sbjct: 147 LQEFPGEGIA 156
>gi|402466077|gb|EJW01645.1| hypothetical protein EDEG_03812 [Edhazardia aedis USNM 41457]
Length = 856
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+P +E EA++QCA +L+++ D + D+DIFLFG + +YR+ + + + Y++
Sbjct: 651 FNLPFVEAPLEADSQCAYFSLKNIVDAVITEDNDIFLFGGKKIYRNYFKNGKN-IDLYDI 709
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
++I++ + R+ +I ++L+LGSDY G++G G + + ++K
Sbjct: 710 NEIKKII--SRDEMIMISLILGSDYCDGIKGFGLKKSLDLIK 749
>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
Sulfolobus solfataricus
gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
solfataricus P2]
Length = 302
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN L S D D LFGA+ + R++
Sbjct: 82 NIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNL 141
Query: 119 WL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R YV E + + +KLG R LI + +L+G+DY+ G+RG+GPE
Sbjct: 142 TITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPE 201
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 202 RALKIIKKYG 211
>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN L S D D LFGA+ + R++
Sbjct: 126 NIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNL 185
Query: 119 WL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R YV E + + +KLG R LI + +L+G+DY+ G+RG+GPE
Sbjct: 186 TITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPE 245
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 246 RALKIIKKYG 255
>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
Length = 835
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
GVP + EAE+QCA +N C S DSD +FGA+ + ++ + ++ + + Y +
Sbjct: 538 FGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFY-NDKVFEL-YTL 595
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
D I R+LG GR L +A++ G DY+ GV+G+G +A +++K+
Sbjct: 596 DRIRRELGIGRKQLALIAIICGCDYTTGVKGIGIVNALEVIKA 638
>gi|28380021|sp|Q980U8.2|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN L S D D LFGA+ + R++
Sbjct: 129 NIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNL 188
Query: 119 WL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R YV E + + +KLG R LI + +L+G+DY+ G+RG+GPE
Sbjct: 189 TITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPE 248
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 249 RALKIIKKYG 258
>gi|313246225|emb|CBY35158.1| unnamed protein product [Oikopleura dioica]
Length = 846
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 27/259 (10%)
Query: 44 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 103
L K+SS + + K+A + G EAEAQCA + ++ G + D
Sbjct: 600 LQKLSSALKITSVPSQQLYKDAAEMLTLFGCGVFFAPGEAEAQCAEFEMTNITQGTITDD 659
Query: 104 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 163
D FLFG RTV + + LG V Y++ + E F R LI LA L GSDY G++ +
Sbjct: 660 GDTFLFGGRTVIKGLTLG-NMVPVKYDIQETE----FSREFLIALAQLTGSDYCNGIKSV 714
Query: 164 GPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 223
G ++A +I++ D +R L+ N+ + W N +SL N
Sbjct: 715 GSKTAIKILEEFDD----RRSEDPHLTL-----NTFSKWW----NTHHKSLTTGTNGIPL 761
Query: 224 DHSLQR-----ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWP 278
L++ + P + AY +P + + R L R+ Q A+ +W
Sbjct: 762 RAKLKKLNIDADFPSDRSRHAYLHPNVEKLKDKKI-RFTVPDL---NRIRQYAARKLEWQ 817
Query: 279 PEKTDEYILPKIAERDLRR 297
E D++I+P + E+ +R
Sbjct: 818 EEAIDQHIIPLLPEKMEKR 836
>gi|384433639|ref|YP_005642997.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
Length = 351
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN L S D D LFGA+ + R++
Sbjct: 131 NIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNL 190
Query: 119 WL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R YV E + + +KLG R LI + +L+G+DY+ G+RG+GPE
Sbjct: 191 TITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPE 250
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 251 RALKIIKKYG 260
>gi|308159723|gb|EFO62244.1| Flap structure-specific endonuclease [Giardia lamblia P15]
Length = 361
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 28 RRRLNSGSEVTQ----DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 83
RR+ +E+ Q ++ NL++ L R K+A+ L LG+P + EA
Sbjct: 101 RRQAREAAELEQQKAEEEGNLERAKQLSRRTVKVTQQHCKQAERLLDVLGIPYIIAAGEA 160
Query: 84 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN 143
EAQC + E LC+G SSD D+ FG+ + R++ G ++ ++ + ++LGF +
Sbjct: 161 EAQCVAMAKERLCEGVASSDLDVLAFGSPCLIRNLAQGGDREIMEINLNIVLKELGFSYD 220
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIV 172
+ L +L G DY+ + G+GP++A +++
Sbjct: 221 EFLDLCILCGCDYANSLEGIGPKTAYKLI 249
>gi|340056397|emb|CCC50728.1| putative DNA repair protein RAD2 [Trypanosoma vivax Y486]
Length = 753
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EA+AQCA LN + L D F+ DSD+ + GA TV R + G R VV Y
Sbjct: 484 GIPFIISPNEADAQCAYLNSQRLVDAVFTEDSDVIVHGAPTVLRGFFSGNR-QVVAYHQS 542
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV 175
D+ G ++ L+ LA+LLG DY++GV GL A +V SV
Sbjct: 543 DL-LTCGVDKSVLVALAILLGCDYAEGVHGLSLLEALHVVASV 584
>gi|269986761|gb|EEZ93040.1| XPG I domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 332
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 23/220 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DKMSSLRRNMGSEFSCMIKEAKALGL 70
+G+ P K T + R + E + +N +K +RR + +I +K L
Sbjct: 79 FDGAAPKFKKETLKEREKTKEEAIEKMQNASTAEEKAMYMRR-LSRIDDYIIDSSKELLS 137
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYV---- 126
LG+P ++ E EAQ A LN++ S D D LFGA+ V R++ + + +
Sbjct: 138 YLGIPYVQAPAEGEAQAAQLNMQGKVFAAASQDYDTLLFGAKKVVRNLNITNKRKISGKG 197
Query: 127 ----VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 179
V E+ + +LG R LITL+L +G+DY++GV G+GP+ A +IVK
Sbjct: 198 ITTSVLPELINANPNLARLGITREQLITLSLFVGTDYNKGVDGIGPKKALKIVKEKSREE 257
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 219
+ S+ R+ S KE + + + K +N+++N
Sbjct: 258 IFA-------SYDFRSDYSIKEIYDYFISPKIIEVNEDLN 290
>gi|303390841|ref|XP_003073651.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
gi|303302798|gb|ADM12291.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
Length = 558
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+ +E EA+AQC + + DG + D+D+ L+G TVYR+ + +RG + Y +
Sbjct: 395 FNISYVEAPSEADAQCGFMCRNNTVDGVITEDNDVLLYGG-TVYRNFFRRDRG-IEKYSL 452
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ I+++L R +LI L+ LLGSDY+ GV+G+GP A + V+
Sbjct: 453 ERIKKELNLDRKNLIELSYLLGSDYTLGVKGIGPVKALEAVR 494
>gi|440296320|gb|ELP89147.1| hypothetical protein EIN_485090 [Entamoeba invadens IP1]
Length = 688
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-GERGYVVCY 129
+L +P + EAEAQCA N +CD S+DSD+F+FGA+ V R+ + GE +
Sbjct: 474 ALEIPHVFSPWEAEAQCAYYNKTKMCDYVASNDSDVFVFGAKNVIRNFLIDGEVATI--- 530
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ I LALLLGSD+++GV +GP+ A QI+K
Sbjct: 531 ------HTANLTQEKYIFLALLLGSDFTEGVGKVGPKRAIQIIK 568
>gi|452822684|gb|EME29701.1| flap endonuclease-1 [Galdieria sulphuraria]
Length = 377
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Query: 28 RRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQC 87
RR+ + + + +++ +++ R + +I+++K L +G+P LE EEAEAQC
Sbjct: 104 RRQAEASAALAKEEGDVEAYEKFNRRVNKVSPEVIEQSKRLLRLMGIPILEAPEEAEAQC 163
Query: 88 ALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG------ERG-YVVCYEMDDIERKLGF 140
A L E+L S D D FG+ V R +W+G ++G + + + ++ +L F
Sbjct: 164 ASLCKENLVYATASEDMDSLTFGSSKVIRQLWVGATSTAEKKGIHPLEFSLEKALLELNF 223
Query: 141 GRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
I L +L G DY +RG+GP A +++ G+
Sbjct: 224 SYEQFIDLCILCGCDYLDSIRGIGPYKAFNLIRKHGN 260
>gi|294909525|ref|XP_002777787.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
gi|239885749|gb|EER09582.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
Length = 937
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 13 RSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 72
R G +P L + +L ++ +D N++K++ + + +F + ++ + L +
Sbjct: 716 RKEGGQVPLSALDDLQSKLRVEEKLLED--NVNKLAKQQTEV--DFRALKEDIQLLLTAF 771
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P ++ EAEAQC L L DG S DSD ++GA V R ++ + YV Y
Sbjct: 772 GIPWVDAPCEAEAQCVALVRNGLADGVISDDSDTLMYGAEVVLRRLYF-DAMYVEMYSSS 830
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ +L +++++LA+LLG DY+ GV G+G +A +I+++
Sbjct: 831 RMPDRL-RDHDAMVSLAMLLGCDYTPGVLGIGAVNALEIIQA 871
>gi|229581484|ref|YP_002839883.1| flap endonuclease-1 [Sulfolobus islandicus Y.N.15.51]
gi|228012200|gb|ACP47961.1| XPG I domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 302
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN+ S D D LFGA+ + R++
Sbjct: 82 NMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNL 141
Query: 119 WL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R Y+ + E+ + E +KLG R LI +++L+G+DY+ G++G+GPE
Sbjct: 142 TITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPE 201
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 202 RALKIIKKYG 211
>gi|347522663|ref|YP_004780233.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
gi|343459545|gb|AEM37981.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
Length = 350
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL---RR--NMGSEFS 59
+ + ++ +G P IK RR SE + + K L RR M S +
Sbjct: 72 IEHGIKVVYVFDGKPPEIKSIEIERRKKVKSEAAKKYEEAIKKGDLEAARRYAQMASRLT 131
Query: 60 -CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
M+KEAK L ++GVP ++ + EAQ A + + S D D LFGA + R++
Sbjct: 132 EDMVKEAKRLLDAMGVPWVQAPADGEAQAAYMARKGDVWAAASQDYDALLFGAPRLVRNL 191
Query: 119 WLGERG-------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ R YV E+D + + LG R LI + +L+G+DY+ GVRG+GP+
Sbjct: 192 TITGRRKLPKKDVYVEIKPELIELDKLLKALGITREQLIVIGILVGTDYNPDGVRGIGPK 251
Query: 167 SACQIVKSVGD 177
+A ++VK+ D
Sbjct: 252 TALRMVKAQPD 262
>gi|229579856|ref|YP_002838255.1| flap endonuclease-1 [Sulfolobus islandicus Y.G.57.14]
gi|238620410|ref|YP_002915236.1| flap endonuclease-1 [Sulfolobus islandicus M.16.4]
gi|284998466|ref|YP_003420234.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|304372803|ref|YP_003858299.1| flap-1 endonuclease [Sulfolobus islandicus L.S.2.15]
gi|385776538|ref|YP_005649106.1| XPG I domain-containing protein [Sulfolobus islandicus REY15A]
gi|228010571|gb|ACP46333.1| XPG I domain protein [Sulfolobus islandicus Y.G.57.14]
gi|238381480|gb|ACR42568.1| XPG I domain protein [Sulfolobus islandicus M.16.4]
gi|284446362|gb|ADB87864.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|323475286|gb|ADX85892.1| XPG I domain protein [Sulfolobus islandicus REY15A]
Length = 302
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN+ S D D LFGA+ + R++
Sbjct: 82 NMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNL 141
Query: 119 WL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R Y+ + E+ + E +KLG R LI +++L+G+DY+ G++G+GPE
Sbjct: 142 TITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPE 201
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 202 RALKIIKKYG 211
>gi|227828219|ref|YP_002829999.1| flap endonuclease-1 [Sulfolobus islandicus M.14.25]
gi|227460015|gb|ACP38701.1| XPG I domain protein [Sulfolobus islandicus M.14.25]
Length = 302
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN+ S D D LFGA+ + R++
Sbjct: 82 NMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNL 141
Query: 119 WL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R Y+ + E+ + E +KLG R LI +++L+G+DY+ G++G+GPE
Sbjct: 142 TITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPE 201
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 202 RALKIIKKYG 211
>gi|385773896|ref|YP_005646463.1| XPG I domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|323478011|gb|ADX83249.1| XPG I domain protein [Sulfolobus islandicus HVE10/4]
Length = 302
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN+ S D D LFGA+ + R++
Sbjct: 82 NMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNIIGFSWAAASQDYDSILFGAKRLVRNL 141
Query: 119 WL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R Y+ + E+ + E +KLG R LI +++L+G+DY+ G++G+GPE
Sbjct: 142 TITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPE 201
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 202 RALKIIKKYG 211
>gi|253744402|gb|EET00616.1| Flap structure-specific endonuclease [Giardia intestinalis ATCC
50581]
Length = 361
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 28 RRRLNSGSEVTQ----DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 83
RR+ +E+ Q ++ ++++ L R K+A+ L LG+P + EA
Sbjct: 101 RRQAREAAELEQQKAEEEGDIERAKQLSRRTVKVTQQHCKQAEKLLDILGIPYVVAAGEA 160
Query: 84 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN 143
EAQC + LC+G SSD D+ FG+ ++ R++ G ++ +D + +LGF +
Sbjct: 161 EAQCVAMAKAGLCEGVASSDLDVLAFGSPSLIRNLAQGGDKEIMEINLDTVLNELGFSYD 220
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIV 172
+ L +L G DY+ + G+GP++A +++
Sbjct: 221 EFLDLCILCGCDYANSLEGIGPKTAYKLI 249
>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
Length = 351
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN+ S D D LFGA+ + R++
Sbjct: 131 NMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNL 190
Query: 119 WL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R Y+ + E+ + E +KLG R LI +++L+G+DY+ G++G+GPE
Sbjct: 191 TITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDYNPDGIKGIGPE 250
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 251 RALKIIKKYG 260
>gi|224002667|ref|XP_002291005.1| nuclease, Fen1 like, Rad27 family [Thalassiosira pseudonana
CCMP1335]
gi|220972781|gb|EED91112.1| nuclease, Fen1 like, Rad27 family, partial [Thalassiosira
pseudonana CCMP1335]
Length = 754
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
+R GS+F + ++L LGVP + E EA CALLN + +CDG S+D D FLFG
Sbjct: 106 QRRSGSQFWSATERCESLLRLLGVPVVRAEAEGEALCALLNAKGVCDGVISNDGDCFLFG 165
Query: 111 ARTVYRDIWLG--ERGYVVCYE----MDDIE------RKLGFGRNSLITLALLLGSD-YS 157
A+T+Y + E V+CY+ M ++ + + R L+ ALL GSD +
Sbjct: 166 AKTLYTKFTMENLESRQVMCYDATALMATVDSDGLNGKTITLSREDLVAFALLTGSDMFG 225
Query: 158 QGVRGLGPESACQIVKS 174
G+ +G + A Q + +
Sbjct: 226 AGLSHVGHKKAVQFLHT 242
>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
Length = 327
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I+ +K L ++G+P ++ E EAQ L S D D LFGA V R++ +
Sbjct: 131 IIESSKELLDAMGIPYIQAPNEGEAQAVYLVKNGDAWAVASQDYDCLLFGAPRVIRNLAI 190
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NV 179
+ E+D I +KLG R LI +ALL+G+D++ GV+G+G + +++K GD
Sbjct: 191 SSDINLELLELDKILKKLGISREQLIDIALLVGTDFNPGVKGIGAKRGLELIKKFGDIYT 250
Query: 180 VLQRIASE 187
V++R+ E
Sbjct: 251 VIKRMNLE 258
>gi|399217224|emb|CCF73911.1| unnamed protein product [Babesia microti strain RI]
Length = 895
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 74 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD 133
+P + EAEAQCA LN+E G S DSD +FGA V ++ + +R + Y+ +
Sbjct: 622 IPIIFAPSEAEAQCAQLNIEQSVYGVISDDSDTLVFGAIRVVKNFFNKQRN-LELYQSQN 680
Query: 134 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
I++ LG R L +ALL G DY+ GV+G+G +A +I+++
Sbjct: 681 IKQTLGLTREKLALIALLCGCDYTSGVKGIGIVNALEIIEA 721
>gi|313217057|emb|CBY38243.1| unnamed protein product [Oikopleura dioica]
gi|313224508|emb|CBY20298.1| unnamed protein product [Oikopleura dioica]
Length = 538
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 44 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 103
L K+SS + + K+A + G EAEAQCA + ++ G + D
Sbjct: 292 LQKLSSALKITSVPSQQLYKDAAEMLTLFGCGVFFAPGEAEAQCAEFEMTNITQGTITDD 351
Query: 104 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 163
D FLFG R V + + LG V Y++ + E F R LI LA L GSDY G++ +
Sbjct: 352 GDTFLFGGRIVIKGLTLG-NMVPVKYDVQETE----FSREFLIALAQLTGSDYCNGIKSV 406
Query: 164 GPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 223
G ++A +I++ D +R L+ N+ + W N +SL N
Sbjct: 407 GSKTAIKILEEFDD----RRSEDPHLTL-----NTFSKWW----NTHHKSLTTGTNGIPL 453
Query: 224 DHSLQR-----ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWP 278
L++ + P + AY +P + + R L R+ Q A+ +W
Sbjct: 454 RAKLKKLNIDADFPSDRSRHAYLHPNVEKLKDKKI-RFTVPDL---NRIRQYAARKLEWQ 509
Query: 279 PEKTDEYILPKIAERDLRR 297
+ D++I+P + E+ +R
Sbjct: 510 EQAIDQHIIPLLPEKMEKR 528
>gi|429964650|gb|ELA46648.1| hypothetical protein VCUG_01874 [Vavraia culicis 'floridensis']
Length = 720
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 96 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 155
D + D+D+FLFGA +Y+D + G + Y M +I+ KL R LI L++ +G+D
Sbjct: 575 VDAVITEDNDVFLFGASRIYKDYFRGPK----LYTMQNIKNKLNLEREDLIKLSVFMGND 630
Query: 156 YSQGVRGLGPESACQIVKSVGDNVVLQRI 184
Y+ G+RG+GP+ A +I+K QRI
Sbjct: 631 YTVGIRGIGPKKALEILKCESKTSYDQRI 659
>gi|402588539|gb|EJW82472.1| XPG domain-containing protein [Wuchereria bancrofti]
Length = 604
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EAEAQC L L G S DSD++LFGA VY++++ ++ + Y M+
Sbjct: 482 GIPFVIAPGEAEAQCCELEKLGLVQGIISDDSDVWLFGAAVVYKNMF-NQKRRLQMYSME 540
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
I +LG R I +ALL G DY+ G+ G+G +A +++
Sbjct: 541 SIRNQLGLSRWEAIQIALLSGGDYTNGLEGVGVVAALELI 580
>gi|448439982|ref|ZP_21588230.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
gi|445690499|gb|ELZ42709.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
Length = 325
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L RG ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQ--LTSRGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
LGF R L+ A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLDGLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGD 247
>gi|222480031|ref|YP_002566268.1| flap endonuclease-1 [Halorubrum lacusprofundi ATCC 49239]
gi|222452933|gb|ACM57198.1| XPG I domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 325
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
LGF R L+ A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGD 247
>gi|330835718|ref|YP_004410446.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
gi|329567857|gb|AEB95962.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
Length = 301
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M E K L +G+P ++ E EA+ A +N + L S D D LFGA + R++
Sbjct: 82 SSMANEGKRLLSLMGIPTVQAPSEGEAEAAYMNSQGLVYAAASQDYDSLLFGATRLIRNL 141
Query: 119 WL-GER------GYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R YV E D + +KLG R+ LI +A+L+G+DY+ G++G+GP+
Sbjct: 142 TISGKRKLPNKDAYVEVKPEVIEADLLLKKLGITRDELIDIAILIGTDYNPDGIKGIGPK 201
Query: 167 SACQIVKS 174
A +++K+
Sbjct: 202 RAYKLIKT 209
>gi|396082166|gb|AFN83777.1| Rad2 [Encephalitozoon romaleae SJ-2008]
Length = 559
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+ ++ EA++QC + ++ DG + D+D+ L+G TVYR+ + +R + Y +
Sbjct: 396 FNISYVDAPTEADSQCGFMCYRNIVDGVITEDNDVLLYGG-TVYRNFFRRDRE-IEKYSL 453
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ IE+ L R +LI L+ +LGSDY+ GV+G+GP A + V+
Sbjct: 454 EKIEKDLRLDRKNLIRLSHMLGSDYTPGVKGIGPVKALEAVR 495
>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
gi|166973698|sp|A8AAC1.1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
Length = 350
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 14/137 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M++EAK L ++GVP ++ E EAQ A + + S D D LFG+ + R++ +
Sbjct: 135 MVEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQDYDSLLFGSPRLVRNLAV 194
Query: 121 GER------GYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
R V + ++I K LG R L+ +A+L+G+DY+ GV+G+GP++A
Sbjct: 195 SGRRKLPNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLIGTDYTPGVKGVGPKTAL 254
Query: 170 QIVKSVGDNVVLQRIAS 186
+ VKS GD L+R+ +
Sbjct: 255 RYVKSYGD---LERVLT 268
>gi|392589119|gb|EIW78450.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 386
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 24/255 (9%)
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
+K KA ++G C + EAEA+ A LN + D ++DSD FLFGA+ V R +
Sbjct: 137 VKGLKAFIRAMGFDCHDAPGEAEAELAALNGLGVIDAVMTTDSDAFLFGAKCVLRMYVIN 196
Query: 122 ERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK-SVGDNV 179
Y + Y + + + R L+ +ALL+G DY G+ G G +A + + GD++
Sbjct: 197 HDPYTIQLYTQERLTNTVDLSRGGLVLMALLVGGDYHPGLPGCGTATAYALAQYGFGDDL 256
Query: 180 VLQRIASEGLSF----------VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
V + ++ + + A N +G F+ +K S++ SL R
Sbjct: 257 VDAMLHADQPNLSAFLATLRGQISHAANVDPKGL-FR--SKRPSISA---------SLTR 304
Query: 230 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 289
E P V++AY +P + + + RL ++C + W ++ PK
Sbjct: 305 EFPNVNVLNAYMHPATSVTRGDPLPILSPLMKIDIPRLAELCQRHLCWTSQEVMCKFRPK 364
Query: 290 IAERDLRRFANLRAN 304
+ R A +N
Sbjct: 365 VWHVAFLRRAFYVSN 379
>gi|452843959|gb|EME45893.1| hypothetical protein DOTSEDRAFT_22018 [Dothistroma septosporum
NZE10]
Length = 925
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 92/232 (39%), Gaps = 38/232 (16%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-- 122
AK L G P EAEA+CALL E + D S D D +FG+ ++ W E
Sbjct: 107 AKQLLKQFGFPWHIAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLKN-WSSEGT 165
Query: 123 ---RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 178
+V Y + + K G R +I +AL+ G DY ++G+ G GP+ AC +
Sbjct: 166 SKVPTHVNVYRAQETKEKSGMDREGMILVALMSGGDYITEGIPGCGPKLACDAAR----- 220
Query: 179 VVLQRIASEGLSFVKRAKNSKKEG---WSFKCNNKEESLNQEINVNGTDHSLQRET---- 231
A G + A+N KEG W E L +I N H ++ +
Sbjct: 221 ------AGFGRDMCEVARNKDKEGLKAW-------RERLQHQIVTNEAKHFSRKNSKLVI 267
Query: 232 ----PFSQVIDAYSNPKCYSADSEAVHRVLAQ--HLFQHARLHQVCAQFFQW 277
P +V+ Y++P + D R Q A L A F W
Sbjct: 268 PDDFPNQEVLGYYTHPCISTPDKLERLRNSLQWDQPIDFAALRSFAADAFDW 319
>gi|300706556|ref|XP_002995534.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
gi|239604679|gb|EEQ81863.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
Length = 563
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+P L+ E++AQCA L + DG + DSDI L G VY++ + + Y+ Y+
Sbjct: 402 FNMPYLDSPSESDAQCASLCKSGVVDGVITEDSDILLHGG-VVYKNFFRKNK-YITKYDP 459
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
I +G N LI+L +LGSDY+ G++G+G + A + +KS
Sbjct: 460 KKIYEVMGLSLNDLISLGYILGSDYTVGIKGIGIKKAVEYIKS 502
>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74830896|sp|Q57WW6.1|FEN1_TRYB2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376199|sp|C9ZKW4.1|FEN1_TRYB9 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
DAL972]
Length = 393
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S R + DD+ ++KMS +G + ++E
Sbjct: 89 FDGKPPTLKASELESRRQRAEDAKHEFEKAKEEGDDEAMEKMSKRMVRVGRD---QMEEV 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L +G+P ++ EAEAQCA L ++ + D D FG+R + R + GE +
Sbjct: 146 KTLLRLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALAFGSRVMLRHLTYGEAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+ Y +D+I GF I L +LLG DY + G+GP A + +K G
Sbjct: 206 RPIAEYHLDEILEASGFSMQQFIDLCILLGCDYVPRISGIGPHKAWEGIKKYG 258
>gi|166085109|dbj|BAF99819.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085111|dbj|BAF99820.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M++E+K L ++G+P ++ E EAQ A + + S D D LFG+ + R++
Sbjct: 99 SDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNL 158
Query: 119 WL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 166
+ G YV E++ + KLG R LI + +LLG+DY+ GVRG GP+
Sbjct: 159 AITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPK 218
Query: 167 SACQIVKSVGD 177
+A ++VKS+GD
Sbjct: 219 TALRLVKSLGD 229
>gi|393234466|gb|EJD42028.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 548
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 109/267 (40%), Gaps = 39/267 (14%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD---IWLGERG--- 124
+ G C+ EAEA+ A LN + D S D D FLFGA V R+ RG
Sbjct: 120 AFGYECIHAPGEAEAELAHLNRIGIIDAILSDDVDTFLFGASLVIRNPSATLSANRGNPI 179
Query: 125 ----------YVVCYEMDDI--ERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+V CY DD+ + + LI +ALL G DY GVRG+G A +
Sbjct: 180 KNSEGRADGNHVKCYRADDLRTHEDIALTQGGLILIALLSGGDYHPGVRGIGMGIARGLA 239
Query: 173 K-SVGDNVVLQRIASEGLSFVK-RAKNSKKEGWSFKCNNKEESLNQEINVNGTDH----- 225
+ GD +V E + +K A + + W + N E + G +
Sbjct: 240 QCGFGDQLV------EAMRTLKGHALETFLQQW--RANVAHELRTDSRGLVGRKYRQLAN 291
Query: 226 SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPP-----E 280
+ R+ P V+DAY NP A +H + + L ++C + F+W E
Sbjct: 292 TFSRDFPDLSVVDAYVNPVVSQARG-TLHDLKWRREPDLLLLAKLCERHFEWGYTDAILE 350
Query: 281 KTDEYILPKIAERDLRRFANLRANTLA 307
+ + P I R LRR L +T A
Sbjct: 351 RFRTLVWPGIVCRLLRRSVLLAEDTAA 377
>gi|166085113|dbj|BAF99821.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M++E+K L ++G+P ++ E EAQ A + + S D D LFG+ + R++
Sbjct: 99 SDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNL 158
Query: 119 WL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 166
+ G YV E++ + KLG R LI + +LLG+DY+ GVRG GP+
Sbjct: 159 AITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPK 218
Query: 167 SACQIVKSVGD 177
+A ++VKS+GD
Sbjct: 219 TALRLVKSLGD 229
>gi|76364187|sp|Q4JAN1.2|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 12/125 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M++E+K L ++G+P ++ E EA+ A +N L S D D LFGA+ + R+I +
Sbjct: 131 MVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITI 190
Query: 121 -GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+R YV E++ + +KLG R LI +A+L+G+DY+ GV+G+G ++A
Sbjct: 191 SGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTA 250
Query: 169 CQIVK 173
+I+K
Sbjct: 251 LRIIK 255
>gi|324501186|gb|ADY40530.1| DNA repair protein RAD2 [Ascaris suum]
Length = 947
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
Query: 46 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 105
K + + + E + KE + L G+P + EAEAQC L L G S DSD
Sbjct: 480 KEAQMEAELEREQEGVYKECQELLRLCGIPFVVSPGEAEAQCCELERLGLVQGIVSDDSD 539
Query: 106 IFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 165
++LFGA TVY+++ ++ V + + I ++LG R + +ALL G DY+ G+ +G
Sbjct: 540 VWLFGASTVYKNM-FNQKRRVQMFSSETIHKQLGLTRWETVQIALLSGGDYTPGLDNIGV 598
Query: 166 ESACQIVKSVG----DN--------VVLQRIA 185
+A +++ DN VLQRI+
Sbjct: 599 VTALELISEFALPSEDNCDEEAQAFAVLQRIS 630
>gi|452983877|gb|EME83635.1| hypothetical protein MYCFIDRAFT_154172 [Pseudocercospora fijiensis
CIRAD86]
Length = 788
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 82/197 (41%), Gaps = 31/197 (15%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER- 123
AK L P EAEA+CALL E + D S D D +FG+ T R+ W E
Sbjct: 107 AKQLLKQFAFPWHVAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGTTLRN-WTAEST 165
Query: 124 ----GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 178
+V Y + + K G R +I +AL+ G DY ++G+ G GP C ++
Sbjct: 166 NKTPTHVNVYRAAETKEKSGLDREGMILVALMSGGDYITEGIPGCGPRVGCDAARA---- 221
Query: 179 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH--------SLQRE 230
E ++ KR S + W E L EI N + H + +
Sbjct: 222 ----GFGRELVNLAKRRDMSGLKAW-------RERLQHEIQTNESKHFSRKNNTLKIPDD 270
Query: 231 TPFSQVIDAYSNPKCYS 247
P +V+ Y++P C S
Sbjct: 271 FPNREVLGYYTDP-CTS 286
>gi|166085105|dbj|BAF99817.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 25 STYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAE 84
+ YRR L +G EV + K + L S M++E+K L ++G+P ++ E E
Sbjct: 73 ARYRRALEAG-EVEEARKYAMMAARLT-------SDMVEESKELLDAMGMPWVQAPAEGE 124
Query: 85 AQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDD 133
AQ A + + S D D LFG+ + R++ + G YV E++
Sbjct: 125 AQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELES 184
Query: 134 IERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGD 177
+ KLG R LI + +LLG+DY+ G+RG GP++A ++VKS+GD
Sbjct: 185 LLSKLGITREQLIAVGILLGTDYNPGGIRGYGPKTALRLVKSLGD 229
>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
gi|449066790|ref|YP_007433872.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449069063|ref|YP_007436144.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449035298|gb|AGE70724.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449037571|gb|AGE72996.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
Length = 331
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 12/125 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M++E+K L ++G+P ++ E EA+ A +N L S D D LFGA+ + R+I +
Sbjct: 113 MVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITI 172
Query: 121 -GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+R YV E++ + +KLG R LI +A+L+G+DY+ GV+G+G ++A
Sbjct: 173 SGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTA 232
Query: 169 CQIVK 173
+I+K
Sbjct: 233 LRIIK 237
>gi|166085107|dbj|BAF99818.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 25 STYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAE 84
+ YRR L +G EV + K + L S M++E+K L ++G+P ++ E E
Sbjct: 73 ARYRRALEAG-EVEEARKYAMMAARLT-------SDMVEESKELLDAMGMPWVQAPAEGE 124
Query: 85 AQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDD 133
AQ A + + S D D LFG+ + R++ + G YV E++
Sbjct: 125 AQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELES 184
Query: 134 IERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGD 177
+ KLG R LI + +LLG+DY+ G+RG GP++A ++VKS+GD
Sbjct: 185 LLSKLGITREQLIAVGILLGTDYNPGGIRGYGPKTALRLVKSLGD 229
>gi|28380019|sp|Q976H6.2|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|342306106|dbj|BAK54195.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E+K L ++G+P ++ E EA+ A +N+ L S D D LFGA+ + R++ L
Sbjct: 133 MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTL 192
Query: 121 -------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+ YV E+D + +KLG R LI + +++G+DY+ G++G G ++A
Sbjct: 193 SGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTA 252
Query: 169 CQIVKSVG 176
+I+K G
Sbjct: 253 YRIIKKYG 260
>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
gi|166973699|sp|A6UX46.1|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
Length = 326
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 15 LNGSIPAIKLSTY--RRRLNSGS----EVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKAL 68
+G P +KL T RR++ + E+ + ++N++ M + + + K L
Sbjct: 79 FDGKPPELKLKTREERRKVKEKASKDYEIAKREENIEDMQKYAKRINYLEPNTVDNCKKL 138
Query: 69 GLSLGVPCLEGVEEAEAQCALL--NLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYV 126
+G+P ++ E EAQCA + N ++ C S D D L+GA R+I + +
Sbjct: 139 LKLMGIPYIDAPSEGEAQCAHMIKNGDAYC--VVSQDYDALLYGAPRTVRNITASNKP-L 195
Query: 127 VCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQRIA 185
E++DI + L + LI +A+L+G+DY+ G++G+GP+ A I+K+ N ++ I
Sbjct: 196 ELMEIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIKNKKMNEYIKDI- 254
Query: 186 SEGLSFVKRA-KNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFS 234
E +K KN K ++ KE+ + N+ G L E FS
Sbjct: 255 -ENYEEIKNIFKNPKVVDYT-----KEDIKLKSPNIEGLKEFLIEENDFS 298
>gi|401828649|ref|XP_003888038.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
gi|392999112|gb|AFM99057.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
Length = 564
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFG 141
EA++QC + ++ DG + D+D+ L+G T++R+ + +R + Y ++ IE +L
Sbjct: 411 EADSQCGFMCYSNIVDGVITEDNDVLLYGG-TIFRNFFRKDR-EIEKYSLEKIEEELKLD 468
Query: 142 RNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
R +LI L+ LLGSDY+ GVRG+GP A V+
Sbjct: 469 RKNLIELSHLLGSDYTPGVRGIGPVKALDAVR 500
>gi|297619418|ref|YP_003707523.1| flap structure-specific endonuclease [Methanococcus voltae A3]
gi|297378395|gb|ADI36550.1| flap structure-specific endonuclease [Methanococcus voltae A3]
Length = 327
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Query: 37 VTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLC 96
V + +++ +KM + M + M+ K L +GVP L E EAQCA + +
Sbjct: 107 VAKKEEDTEKMQKFAKRMNYLDTNMVLNCKRLLDLMGVPHLTSGSEGEAQCAEIVKKGDA 166
Query: 97 DGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
S D D L+GA V R+I E+ D+ +L R+ LI +++L+G+DY
Sbjct: 167 FAVVSQDYDSLLYGADRVIRNITSSSSKEFEYIELKDVLDELDINRSQLIDMSILIGTDY 226
Query: 157 S-QGVRGLGPESACQIVKS 174
+ +GV+GLGP+ A +VK+
Sbjct: 227 NPKGVKGLGPKKALDVVKN 245
>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
Length = 336
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+++ +K L LG+P ++ E EAQ A + + D S D D LFG+ + R++ +
Sbjct: 129 IVESSKTLLEYLGIPYVQAPSEGEAQAAYMVRKGDADYTGSQDYDSLLFGSPKLARNLTV 188
Query: 121 -------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV + E+ D+E +KLG R LI +A+L+G+DY++GV+G+G + A
Sbjct: 189 TGKRKLPGKNVYVEIKPEIIDLEANLKKLGITREQLIDVAILVGTDYNEGVKGIGAKKAL 248
Query: 170 QIVKSVGD 177
+ VK+ GD
Sbjct: 249 KYVKTYGD 256
>gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1]
gi|150421551|sp|Q9YFY5.3|FEN_AERPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116062210|dbj|BAA79026.2| flap structure-specific endonuclease [Aeropyrum pernix K1]
Length = 350
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M++E+K L ++G+P ++ E EAQ A + + S D D LFG+ + R++
Sbjct: 132 SDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNL 191
Query: 119 WL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 166
+ G YV E++ + KLG R LI + +LLG+DY+ GVRG GP+
Sbjct: 192 AITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPK 251
Query: 167 SACQIVKSVGD 177
+A ++VKS+GD
Sbjct: 252 TALRLVKSLGD 262
>gi|118596592|dbj|BAF37955.1| putative flap endonuclease-1 [Sulfolobus sp. NO82]
Length = 304
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E+K L ++G+P ++ E EA+ A +N+ L S D D LFGA+ + R++ L
Sbjct: 86 MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTL 145
Query: 121 -------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+ YV E+D + +KLG R LI + +++G+DY+ G++G G ++A
Sbjct: 146 SGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTA 205
Query: 169 CQIVKSVG 176
+I+K G
Sbjct: 206 YRIIKKYG 213
>gi|15920393|ref|NP_376062.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 304
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E+K L ++G+P ++ E EA+ A +N+ L S D D LFGA+ + R++ L
Sbjct: 86 MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTL 145
Query: 121 -------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+ YV E+D + +KLG R LI + +++G+DY+ G++G G ++A
Sbjct: 146 SGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTA 205
Query: 169 CQIVKSVG 176
+I+K G
Sbjct: 206 YRIIKKYG 213
>gi|118596582|dbj|BAF37950.1| putative flap endonuclease-1 [Sulfolobus sp. Tu A]
gi|118596584|dbj|BAF37951.1| putative flap endonuclease-1 [Sulfolobus sp. Tu B-1]
gi|118596586|dbj|BAF37952.1| putative flap endonuclease-1 [Sulfolobus sp. Sko-3]
gi|118596588|dbj|BAF37953.1| putative flap endonuclease-1 [Sulfolobus sp. Ta]
Length = 304
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E+K L ++G+P ++ E EA+ A +N+ L S D D LFGA+ + R++ L
Sbjct: 86 MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTL 145
Query: 121 -------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+ YV E+D + +KLG R LI + +++G+DY+ G++G G ++A
Sbjct: 146 TGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTA 205
Query: 169 CQIVKSVG 176
+I+K G
Sbjct: 206 YRIIKKYG 213
>gi|146302997|ref|YP_001190313.1| flap endonuclease-1 [Metallosphaera sedula DSM 5348]
gi|145701247|gb|ABP94389.1| flap endonuclease 1 [Metallosphaera sedula DSM 5348]
Length = 300
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 15/144 (10%)
Query: 46 KMSSLRR--NMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 102
K+ +R+ M S + M KE+K L +GVP ++ E EA+ A LN + + S
Sbjct: 66 KVEEMRKYSQMTSRLTTDMAKESKELLEYMGVPTVQAPSEGEAEAAYLNAKGITYASASQ 125
Query: 103 DSDIFLFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALL 151
D D LFGA + R++ + G+R YV E + +KL R LI +A+L
Sbjct: 126 DYDSLLFGAEKLIRNLTISGKRKLPNKDVYVEVKPELIETASLLKKLEITREQLIDIAIL 185
Query: 152 LGSDYS-QGVRGLGPESACQIVKS 174
+G+DY+ GVRG+GP+ A +++K+
Sbjct: 186 VGTDYNPDGVRGIGPKKAYKLIKT 209
>gi|118596590|dbj|BAF37954.1| putative flap endonuclease-1 [Sulfolobus sp. M02]
Length = 304
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E+K L ++G+P ++ E EA+ A +N+ L S D D LFGA+ + R++ L
Sbjct: 86 MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTL 145
Query: 121 -------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+ YV E+D + +KLG R LI + +++G+DY+ G++G G ++A
Sbjct: 146 TGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTA 205
Query: 169 CQIVKSVG 176
+I+K G
Sbjct: 206 YRIIKKYG 213
>gi|448454659|ref|ZP_21594212.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
gi|445814746|gb|EMA64705.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
Length = 325
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGSVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
LGF R L+ A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGD 247
>gi|71031676|ref|XP_765480.1| flap endonuclease 1 [Theileria parva strain Muguga]
gi|122052062|sp|Q4N3S6.1|FEN1_THEPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|68352436|gb|EAN33197.1| flap endonuclease 1, putative [Theileria parva]
Length = 494
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M + AK L +GVP +E +EEAEAQCA L ++LC S D+D +FG + R++
Sbjct: 139 MNESAKKLLRLMGVPVIEALEEAEAQCAYLVTKNLCRFVASEDTDTLVFGGAFLLRNVAS 198
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
++ ++ + L F + I +L G DY + G+GP++A +VK
Sbjct: 199 SSSKKILKVDLQKVLDGLEFNFDQFIDFCILCGCDYCDTLEGVGPKTAYSLVK 251
>gi|448466285|ref|ZP_21599082.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
gi|445814415|gb|EMA64379.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
Length = 325
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGSVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
LGF R L+ A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGD 247
>gi|118596594|dbj|BAF37956.1| putative flap endonuclease-1 [Sulfolobus sp. G81]
Length = 304
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E+K L ++G+P ++ E EA+ A +N+ L S D D LFGA+ + R++ L
Sbjct: 86 MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTL 145
Query: 121 -------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+ YV E+D + +KLG R LI + +++G+DY+ G++G G ++A
Sbjct: 146 SGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTA 205
Query: 169 CQIVKSVG 176
+I+K G
Sbjct: 206 YRIIKKYG 213
>gi|166085101|dbj|BAF99815.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085103|dbj|BAF99816.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 401
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M++E+K L ++G+P ++ E EAQ A + + S D D LFG+ + R++
Sbjct: 183 SDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNL 242
Query: 119 WL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 166
+ G YV E++ + KLG R LI + +LLG+DY+ GVRG GP+
Sbjct: 243 AITGRRKLPGRDQYVEIKPEIIELETLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPK 302
Query: 167 SACQIVKSVGD 177
+A ++VKS+GD
Sbjct: 303 TALRLVKSLGD 313
>gi|393908823|gb|EFO27494.2| hypothetical protein LOAG_00986 [Loa loa]
Length = 880
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EAEAQC L L G S DSD++ FGA VY+++ ++ + Y M+
Sbjct: 507 GIPYVIAPGEAEAQCCELERLGLVHGIISDDSDVWSFGAAMVYKNM-FNQKRRLQMYSME 565
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
I +LG R + +ALL G DY+ G+ G+G +A +++
Sbjct: 566 TIHNQLGLSRWEAVQIALLSGGDYTSGLGGVGVVAALELI 605
>gi|312067080|ref|XP_003136574.1| hypothetical protein LOAG_00986 [Loa loa]
Length = 882
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EAEAQC L L G S DSD++ FGA VY+++ ++ + Y M+
Sbjct: 509 GIPYVIAPGEAEAQCCELERLGLVHGIISDDSDVWSFGAAMVYKNM-FNQKRRLQMYSME 567
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
I +LG R + +ALL G DY+ G+ G+G +A +++
Sbjct: 568 TIHNQLGLSRWEAVQIALLSGGDYTSGLGGVGVVAALELI 607
>gi|84994172|ref|XP_951808.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
gi|74952859|sp|Q4UFP0.1|FEN1_THEAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|65301969|emb|CAI74076.1| 5'-3' exonuclease, putative [Theileria annulata]
Length = 506
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M AK L +G+P +E +EEAEAQCA L ++LC S D+D +FG + R++
Sbjct: 139 MNDSAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLCHFVASEDTDTLVFGGWFLLRNVTS 198
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+V ++ + L F + + +L G DY + G+GP++A +VK
Sbjct: 199 SANKKIVKVDLQKVLDGLEFNFDQFVDFCILCGCDYCDTLEGVGPKTAYSLVK 251
>gi|47224621|emb|CAG03605.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 29/173 (16%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 70
L+ + G P +K T +R + Q + +S R F ++KE +
Sbjct: 21 LVFVMEGEAPKLKAETMSKRTEARYGGFQKTSSTKSKTSTSRG---RFKAVLKECADMLD 77
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV-CY 129
LGVP + EAEA CA L+ + L DGC ++D D+FL+GA+TVYR + + +V CY
Sbjct: 78 ILGVPWVTAAGEAEAMCAYLDSQGLVDGCITNDGDVFLYGAQTVYRSFNMNTKDPLVDCY 137
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQ 182
+ S+G++G+G E A ++++ + + +LQ
Sbjct: 138 KT-------------------------SRGIQGVGKEQALKLIRMLKEQTLLQ 165
>gi|448496208|ref|ZP_21610310.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
gi|445687084|gb|ELZ39377.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
Length = 325
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
LG R L+ +A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLGDLGLDRQGLVDVAMLCGTDFNEGVRGVGPKTAVKAVREHGD 247
>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [Methanocella arvoryzae MRE50]
gi|121690538|sp|Q0W6I0.1|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [Methanocella arvoryzae MRE50]
Length = 340
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ +AK L +G+P + E EAQ A + D S D D LFGA V R+I +
Sbjct: 130 IVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLLFGAPRVVRNIAI 189
Query: 121 GERGYVV-----------CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
+ V E+ ++ LG R LI +A+L+G+DY+ G+ +GP++A
Sbjct: 190 TGKRKVPRKNIYMDVKPEVIELQEVLATLGLTREELIDMAILVGTDYNPGIFKVGPKTAL 249
Query: 170 QIVKSVGDNV 179
++VK GDN+
Sbjct: 250 KLVKKHGDNM 259
>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
[Saccoglossus kowalevskii]
Length = 379
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 17/212 (8%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L +G+P L+ EAEAQCA L + D D FG+ TV R + E
Sbjct: 139 EECKKLLTFMGIPYLDAPGEAEAQCAELVKAGKVYATATEDMDSLTFGSSTVVRHMTFSE 198
Query: 123 RGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ C Y +++I +L ++ I L +LLG DY +RG+GP+ A +++
Sbjct: 199 ARKMPCQEYNLNNILAELELSQDEFIDLCILLGCDYCDSIRGIGPKRAIDLIRQ------ 252
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQRETPFSQ-VID 238
+ E ++ + K + +GW +K + L ++ NV G D L+ P +ID
Sbjct: 253 -HKTIEEVIAHLDSKKYTVPDGWLYK---EARELFKKPNVTAGVDIELKWIDPDEDGLID 308
Query: 239 AYSNPKCYSAD---SEAVHRVLAQHLFQHARL 267
S K ++ D + A + A+H RL
Sbjct: 309 YMSKQKGFAEDRIKNGAKKLLKARHTSTQGRL 340
>gi|124028216|ref|YP_001013536.1| flap endonuclease-1 [Hyperthermus butylicus DSM 5456]
gi|166973697|sp|A2BMI0.1|FEN_HYPBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|123978910|gb|ABM81191.1| Endonuclease [Hyperthermus butylicus DSM 5456]
Length = 350
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 24/198 (12%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMG 55
+ + ++ +G P +K RR SE + D K + + + +
Sbjct: 72 MEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAVKKYEEAVKKGDTKAARRYAQMAARLT 131
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
E M+++AK L ++GVP ++ E EAQ A + S D D LFG+ +
Sbjct: 132 DE---MVEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDAWAAASQDYDSLLFGSPRLV 188
Query: 116 RDIWLGERG-------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGL 163
R++ + R YV E+D + + LG R L+ L +L+G+DY+ GV+G+
Sbjct: 189 RNLAITGRRKLPRKDVYVEIKPELIELDKLLKALGITREQLVALGILIGTDYNPDGVKGI 248
Query: 164 GPESACQIVKSVGDNVVL 181
GP++A ++VK+ D V L
Sbjct: 249 GPKTALKMVKAHRDPVKL 266
>gi|403416579|emb|CCM03279.1| predicted protein [Fibroporia radiculosa]
Length = 663
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 49 SLRRNMGSEFSCMIKEAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDI 106
S RR M + E+K + ++GVPC+E G EAEA + L L D S D+D+
Sbjct: 447 SFRRRMHPPTAETYIESKEILAAMGVPCIEPTGPYEAEALASALVLNGYADYVASEDTDV 506
Query: 107 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 166
++ A + R+I G +V D+ L R S + ALLLG+D+SQ ++ +GP
Sbjct: 507 LVYDAPLI-RNI-ANRNGPLVVISGTDVRTVLQLDRASFVDFALLLGTDFSQRIKNIGPA 564
Query: 167 SACQIVKSVG 176
A + +++ G
Sbjct: 565 RALKFIRAHG 574
>gi|347968324|ref|XP_312255.5| AGAP002669-PA [Anopheles gambiae str. PEST]
gi|333468059|gb|EAA08023.5| AGAP002669-PA [Anopheles gambiae str. PEST]
Length = 733
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 10/154 (6%)
Query: 38 TQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 97
TQ + K + +RN F ++K+ + L ++G+ C++ EAEA CA LN ++L
Sbjct: 99 TQTTEKPAKPTEQKRN---RFHHVLKQCEELLSAMGLVCVQAPGEAEALCAYLNRDNLIY 155
Query: 98 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIER----KLGFGRNSLITLALLLG 153
G S DSD F +GA V+R+ + G V E+ D+ R L G+ ++ +ALL G
Sbjct: 156 GVISQDSDCFAYGAVRVFRNFCASQNGGSV--EIYDLTRVNASVLQLGQEKIVAMALLSG 213
Query: 154 SDY-SQGVRGLGPESACQIVKSVGDNVVLQRIAS 186
DY GV G+G E + + + +L +I S
Sbjct: 214 CDYCPAGVMGVGRELVTRFISCYENGEILPKIRS 247
>gi|448499403|ref|ZP_21611330.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
gi|445697358|gb|ELZ49423.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
Length = 325
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQCAQMAAAGTVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
LG R L+ +A+L G+D+++GVRG+GP++A + V GD
Sbjct: 202 AATLSDLGLDRQGLVDVAMLCGTDFNEGVRGVGPKTAVKAVTEHGD 247
>gi|322707737|gb|EFY99315.1| putative DNA repair endonuclease rad2 [Metarhizium anisopliae ARSEF
23]
Length = 480
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 27/227 (11%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER- 123
AK L G P + E EA+CALL + D S D D +FG R+ W E
Sbjct: 58 AKHLIRLFGFPIHDAPGEGEAECALLQRHGIVDAVLSEDVDTIMFGCTKTLRN-WSSEGK 116
Query: 124 -----GYVVCYEMDDIE-RKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 176
+V Y+++D+ LG R ++ +AL+ G DY GV G G + AC+ K
Sbjct: 117 TSTAPTHVSLYDVEDMALGDLGLDREGMVLVALMSGGDYLPDGVPGCGVKVACEAAK--- 173
Query: 177 DNVVLQRIASEGLSFVKRAKNSKKEG-WSFKCNNKEESLNQEINVNGTDH---SLQRETP 232
A G S V R K S K+G +++ + + E E T H ++ + P
Sbjct: 174 --------AGFGKS-VCRLKVSDKDGIQAWRNSLRHELQTNEKGYFRTKHKALTIPEDFP 224
Query: 233 FSQVIDAYSNPKCYSADS-EAVHRVLAQ-HLFQHARLHQVCAQFFQW 277
+V+ Y++P S S EA+ + + Q H+F L + + F W
Sbjct: 225 NIEVLRYYTHPIVSSESSIEAIRQTMEQKHVFHLTALREFTRENFDW 271
>gi|21227008|ref|NP_632930.1| flap endonuclease-1 [Methanosarcina mazei Go1]
gi|28380015|sp|Q8PYF6.1|FEN_METMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|20905326|gb|AAM30602.1| FLAP endonuclease-1 [Methanosarcina mazei Go1]
Length = 338
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I+++K L +G+P ++ E EAQ A + L+ D S D D FLFGA TV R++
Sbjct: 131 IIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAA 190
Query: 121 -------GERGYV-VCYEMDDIERKL---GFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV V EM ++E L G R+ LI +A+ +G+DY++G+ +GP++A
Sbjct: 191 TGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTAL 250
Query: 170 QIVKSVGD 177
+++K G+
Sbjct: 251 KLIKKHGN 258
>gi|452209484|ref|YP_007489598.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
gi|452099386|gb|AGF96326.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
Length = 338
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I+++K L +G+P ++ E EAQ A + L+ D S D D FLFGA TV R++
Sbjct: 131 IIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAA 190
Query: 121 -------GERGYV-VCYEMDDIERKL---GFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV V EM ++E L G R+ LI +A+ +G+DY++G+ +GP++A
Sbjct: 191 TGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTAL 250
Query: 170 QIVKSVGD 177
+++K G+
Sbjct: 251 KLIKKHGN 258
>gi|378754698|gb|EHY64727.1| flap endonuclease 1-B [Nematocida sp. 1 ERTm2]
Length = 342
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 29 RRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA 88
R+ + ++ Q + +KM +R + + ++ A+AL ++GVP + EAE CA
Sbjct: 103 RKEQAERDLEQAETESEKMKHAKRTVRAT-KYHVESAQALLSAMGVPYMTAPNEAEGFCA 161
Query: 89 LLNLESLCDGCFSSDSDIFLFGARTVYRDIW---LGERGYVVCYEMDDIERKLGFGRNSL 145
LN+ + +G S D D FG + + R+ + + ++ V+ +D++ ++ G +
Sbjct: 162 ALNIANAVNGVVSEDMDSLAFGGKVLLRNFFPALMKKKMAVMEISLDEVLKQTGLDQAEF 221
Query: 146 ITLALLLGSDYSQGVRGLGPESACQIVK 173
I + +LLG DY Q +GLGP+ +V+
Sbjct: 222 IDMCILLGCDYCQKPKGLGPKKVYDLVQ 249
>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
Length = 339
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 20/190 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKAL 68
+G P +K+ T R+ E + + NL++ S + M+ EAK L
Sbjct: 79 FDGRPPELKMRTIGERIKIRMEAKEAWEKALKEGNLEEARSKAQQATFLTKNMVDEAKKL 138
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-GERG--- 124
+G+P ++ E EAQ A + + S D D LFGA + R++ + G+R
Sbjct: 139 LDYMGIPWVQAPSEGEAQAAYMAKKGDTYASASQDFDSLLFGAPNLVRNLAITGKRKLPR 198
Query: 125 ---YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
YV V E+ +E + LG R L+ + +L+G+DY++G++G+GP++A +++K G
Sbjct: 199 KNVYVDVKPEIILLEENLKNLGISREQLVDIGILVGTDYNEGIKGVGPKTALKLIKKYGS 258
Query: 178 NVVLQRIASE 187
L++I E
Sbjct: 259 ---LEKIIQE 265
>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
gi|254788674|sp|B8GIA0.1|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
Length = 333
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I +K L +GVPC++ E EAQ A + S D D LFGA + R++ +
Sbjct: 132 IIATSKELLTLMGVPCVQAPSEGEAQAASMAASGAVTYAVSQDYDSLLFGAPLLVRNLTV 191
Query: 121 GER----GYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
+ G + + +D++ LG R LI +L+G+D++ G+RG+GP++A +I
Sbjct: 192 SSKRRVQGRTIAVQPESIRLDEVLGGLGITREQLIEAGILIGTDFNPGIRGVGPKTALKI 251
Query: 172 VKSVG 176
VK G
Sbjct: 252 VKKDG 256
>gi|389603118|ref|XP_001568459.2| putative DNA repair protein RAD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505733|emb|CAM43572.2| putative DNA repair protein RAD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1029
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
GVP + EA+AQCA L L D F+ DSD+ + GA TV R + + +VV YE
Sbjct: 749 GVPYVLSPAEADAQCAFLARRGLVDAVFTEDSDVLVHGATTVLRG-FFSQSKHVVAYEQT 807
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
+ G + L+ LA LLG DY++G+ G+G
Sbjct: 808 HLS-ACGITKTVLVALASLLGCDYAEGISGIG 838
>gi|429329613|gb|AFZ81372.1| DNA-repair protein xp-G, putative [Babesia equi]
Length = 839
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAE+QCA LN C + DSD +FGA V ++ + Y
Sbjct: 541 FGIPYIVAPSEAESQCAHLNESGACYAVITDDSDALVFGANRVLKNFY--NSNIFEVYTS 598
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ + +LG GR L +A++ G DY+ G++G+G +A +I+K+
Sbjct: 599 ERLFSQLGIGRQELALIAIICGCDYTTGIKGVGIINALEIIKA 641
>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
gi|189044441|sp|A8M9L3.1|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
Length = 350
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M+ EAK L S+GVP ++ E EAQ A + + + S D D FLFGA + R++
Sbjct: 133 SDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQDYDSFLFGAPRLVRNL 192
Query: 119 WL-------GERGYVVC----YEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGP 165
+ G YV E++D+ + L R LI LA+LLG+DY+ +G+ G+GP
Sbjct: 193 TISGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAILLGTDYNPEGIPGIGP 252
Query: 166 ESACQIVKSVG 176
+ A ++++ G
Sbjct: 253 QRALRLIQEYG 263
>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
Length = 339
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 20/190 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKAL 68
+G P +K+ T R+ E + + NL++ S + M+ EAK L
Sbjct: 79 FDGRPPELKMRTIGERIKIRMEAKEAWEKALKEGNLEEARSKAQQATFLTKDMVDEAKKL 138
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-GERG--- 124
+G+P ++ E EAQ A + + S D D LFGA + R++ + G+R
Sbjct: 139 LDYMGIPWVQAPSEGEAQAAYMAKKGDTYASASQDFDSLLFGAPNLVRNLAITGKRKLPR 198
Query: 125 ---YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
YV V E+ +E + LG R L+ + +L+G+DY++G++G+GP++A +++K G
Sbjct: 199 KNVYVDVKPEIILLEENLKNLGISREQLVDIGILVGTDYNEGIKGVGPKTALKLIKKYGS 258
Query: 178 NVVLQRIASE 187
L++I E
Sbjct: 259 ---LEKIIQE 265
>gi|448474374|ref|ZP_21602233.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
gi|445817681|gb|EMA67550.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
Length = 325
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
LG R L+ +A+L G+D+++GVRG+GP++A + + GD
Sbjct: 202 AATLDDLGVDRQGLVDIAMLCGTDFNEGVRGVGPKTAVKAIAEHGD 247
>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
Length = 350
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 12/126 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+ +AK L ++G+P ++ V E EAQ A + + S D D LFG+ + R++ +
Sbjct: 135 MVHDAKKLLDAMGIPWIQAVAEGEAQAAYIVGKGDAWASASQDYDSLLFGSPRLIRNLTI 194
Query: 121 GERG-------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
R Y+ E+ + KLG R LI +ALL+G+DY+ GV+G+GP+ A
Sbjct: 195 SGRRKLPRKNVYIEIKPEIIELKKLLEKLGITREQLIYVALLIGTDYNPDGVKGIGPKKA 254
Query: 169 CQIVKS 174
Q+VK+
Sbjct: 255 LQLVKA 260
>gi|358379429|gb|EHK17109.1| hypothetical protein TRIVIDRAFT_195114 [Trichoderma virens Gv29-8]
Length = 787
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 116/289 (40%), Gaps = 51/289 (17%)
Query: 16 NGSIPAIKLSTYRRRLNSGSEVTQ----DDKNLDKMSSLRRN-MGSEFSCMIKEAKALGL 70
G+ PAI+ YR G+ + D N K RR+ G F+ AK L
Sbjct: 51 GGTNPAIRTLFYRLVRLLGTPIQPIFVFDGPNKPKFKRHRRSGRGDGFAAA--HAKRLIR 108
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW-----LGERGY 125
G + EAEA+CA L + D S D D +FG R+ W G+ +
Sbjct: 109 LFGFVVHDAPGEAEAECAFLQKNGIVDAVLSEDVDTIMFGCTRTLRN-WSAEGKAGKPTH 167
Query: 126 VVCYEMDDIER-KLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQR 183
V Y+++D+ LG R ++ +AL+ G DY +GV G GP+ AC+ K+ + Q
Sbjct: 168 VSMYDVEDLNMANLGLDREGMVLVALMSGGDYIPEGVPGCGPKVACEAAKAGFGKSLCQL 227
Query: 184 IAS--EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET--------PF 233
AS EGL W +ESL E+ N + + R P
Sbjct: 228 RASDTEGL-----------RQW-------KESLRHELQTNESKYFRTRHKALVIPEDFPS 269
Query: 234 SQVIDAYSNPKCYSADSEAVHRVLAQHL-----FQHARLHQVCAQFFQW 277
+V+ Y++P E+ V+ Q L Q L + + F W
Sbjct: 270 VEVLRYYTHPVV---SPESTLEVVRQRLNETREIQLDGLREFTRETFNW 315
>gi|327401884|ref|YP_004342723.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
gi|327317392|gb|AEA48008.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
Length = 338
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+++ +K L +GVP ++ E EAQ A + + D S D D LFG+ + R++ +
Sbjct: 130 IVESSKKLLEYMGVPWVQAPSEGEAQAAYMAAKGDVDFTGSQDYDSLLFGSPKLARNLAI 189
Query: 121 -------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV V E+ D+ R+LG R L+ +ALL+G+DY++GV+G+G + A
Sbjct: 190 TGKRKLPGKNVYVEVKPEIIDLNGNLRRLGITREQLVDIALLVGTDYNEGVKGVGVKKAY 249
Query: 170 QIVKSVGD 177
+ +K+ GD
Sbjct: 250 KYIKTYGD 257
>gi|324509011|gb|ADY43797.1| Flap endonuclease GEN 1 [Ascaris suum]
Length = 534
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 39 QDDKNLDKMSSLRRNMG-------SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLN 91
QD +N+ +R G +E I+E K L ++GV + E EAQCA L
Sbjct: 84 QDMQNIPLKKDRKRGTGIWAPELKTEIMTKIEEIKCLLNAMGVRWMASKLEGEAQCAQLE 143
Query: 92 LESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY-----VVCYEMDDIERKLGFGRNSLI 146
L GC + D D LFG +Y+ + G G ++ MD I +L R+ LI
Sbjct: 144 RRGLVHGCITRDFDYILFGGNNLYQ-VEFGPGGKSIHDNILLLSMDYIGEELCVSRSCLI 202
Query: 147 TLALLLGSDYSQ-GVRGLGPESACQIV 172
++L++G DY Q G+ G+G +A +IV
Sbjct: 203 AMSLMMGCDYYQKGIPGVGAVTALEIV 229
>gi|429962438|gb|ELA41982.1| hypothetical protein VICG_00999 [Vittaforma corneae ATCC 50505]
Length = 613
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L +P +E + E +AQC L + L DG S D+D+ L G TVY++ + ++ ++ +
Sbjct: 447 LELPHIECIGETDAQCGYLFRKRLIDGVVSEDNDMVLHGV-TVYKNFFRKDKD-ILSFSY 504
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
D+ +LG ++SLI ++ LLGSDY GV+ +G +S +K V + VL
Sbjct: 505 QDVIEQLGLDQDSLIKMSYLLGSDYCIGVKRVGIKSVFDRLKDVSEAEVL 554
>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
Length = 344
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 15/147 (10%)
Query: 42 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 101
K L K S + + ++ M +E K L ++G+P ++ E EA+ A L + S
Sbjct: 110 KELKKYSQMATRLTND---MAEEGKRLLEAMGIPVVQAPSEGEAEAAYLCSQGYTWAAAS 166
Query: 102 SDSDIFLFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLAL 150
D D LFGA + R++ L G+R YV E++D+ +K G R L+ + +
Sbjct: 167 QDYDSLLFGANKLIRNLTLTGKRKLPKKDVYVEIKPELIELEDLLKKFGITREQLVDIGI 226
Query: 151 LLGSDYS-QGVRGLGPESACQIVKSVG 176
L+G+DY G++G+GP +A +I+K G
Sbjct: 227 LIGTDYDPDGIKGIGPVTALRIIKKYG 253
>gi|448425472|ref|ZP_21582802.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|448485392|ref|ZP_21606617.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
gi|445680543|gb|ELZ32986.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|445818046|gb|EMA67913.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
Length = 325
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
L R L+ +A+L G+D+++GVRG+GP++A VK GD
Sbjct: 202 AATLSDLDLDRQGLVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGD 247
>gi|324508870|gb|ADY43740.1| Flap endonuclease GEN 1 [Ascaris suum]
Length = 524
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 39 QDDKNLDKMSSLRRNMG-------SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLN 91
QD +N+ +R G +E I+E K L ++GV + E EAQCA L
Sbjct: 84 QDMQNIPLKKDRKRGTGIWAPELKTEIMTKIEEIKCLLNAMGVRWMASKLEGEAQCAQLE 143
Query: 92 LESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY-----VVCYEMDDIERKLGFGRNSLI 146
L GC + D D LFG +Y+ + G G ++ MD I +L R+ LI
Sbjct: 144 RRGLVHGCITRDFDYILFGGNNLYQ-VEFGPGGKSIHDNILLLSMDYIGEELCVSRSCLI 202
Query: 147 TLALLLGSDYSQ-GVRGLGPESACQIV 172
++L++G DY Q G+ G+G +A +IV
Sbjct: 203 AMSLMMGCDYYQKGIPGVGAVTALEIV 229
>gi|448504703|ref|ZP_21614044.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|448519062|ref|ZP_21617838.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
gi|445701913|gb|ELZ53885.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|445704078|gb|ELZ55996.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
Length = 325
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
L R L+ +A+L G+D+++GVRG+GP++A VK GD
Sbjct: 202 AATLSDLDLDRQGLVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGD 247
>gi|169606572|ref|XP_001796706.1| hypothetical protein SNOG_06329 [Phaeosphaeria nodorum SN15]
gi|160707030|gb|EAT86160.2| hypothetical protein SNOG_06329 [Phaeosphaeria nodorum SN15]
Length = 739
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G P EAEA+CALL E + D S D D +FG+ R+ W E+G
Sbjct: 57 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGITIRN-WSPEKG 115
Query: 125 -------YVVCYEMDDIERK---LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
+V Y D +E K G R+ +I +AL+ G DY +G+ G GP++AC+ K
Sbjct: 116 SSGKTPTHVNVY--DAVETKSGPSGLDRDGMILVALMSGGDYVPEGIPGCGPKTACEAAK 173
Query: 174 S 174
+
Sbjct: 174 A 174
>gi|448453282|ref|ZP_21593725.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
gi|445807602|gb|EMA57685.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
Length = 325
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
L R L+ +A+L G+D+++GVRG+GP++A VK GD
Sbjct: 202 AATLSDLDLDRQELVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHGD 247
>gi|284162570|ref|YP_003401193.1| XPG I domain-containing protein [Archaeoglobus profundus DSM 5631]
gi|284012567|gb|ADB58520.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
Length = 335
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I+ +K L +G+P ++ E EAQ A + + D S D D LFG+ + R++ +
Sbjct: 128 IIESSKKLLNLMGIPIVQAPSEGEAQAAYIVRKGDADYTGSQDYDSLLFGSPRLARNLAI 187
Query: 121 -------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ Y V E+ D+E +KLG R LI +ALL+G+DY++GV G+G + A
Sbjct: 188 TGRRKLPGKNVYTEVKPEVIDLEYNLKKLGITREQLIDIALLVGTDYNEGVEGIGVKKAY 247
Query: 170 QIVKSVGDNVVLQRI 184
+ VK+ GD + R+
Sbjct: 248 KYVKAYGDIFKVLRV 262
>gi|428672546|gb|EKX73459.1| flap endonuclease-1, putative [Babesia equi]
Length = 746
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L +G+P +E EEAEAQCA L E + S DSD +FG R + R++ G++
Sbjct: 143 AKQLLRLMGIPVVEAKEEAEAQCAQLVQEGIATAVASEDSDSLVFGCRILLRNL-SGKK- 200
Query: 125 YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
V+ + + + LGF R +L G DY ++G+GP++A ++K
Sbjct: 201 -VLRIDQEKVLSLLGFTRAQFTDFCILCGCDYCGTIKGIGPKNAYSLIK 248
>gi|343471550|emb|CCD16055.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
DD+ ++KMS + E + E K L +G+P ++ EAEAQCA L +
Sbjct: 163 DDEAMEKMSKRMVRVSRE---QMDEVKTLLQLMGIPVVQAPSEAEAQCAELVRKDKAWAV 219
Query: 100 FSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
+ D D FGAR + R + GE + + Y ++DI G I L +LLG DY
Sbjct: 220 GTEDMDALAFGARVMLRHLTYGEAKKRPIAEYHLEDILELAGMTMEQFIDLCILLGCDYV 279
Query: 158 QGVRGLGPESACQIVKSVGDNVVL-------QRIASEGLSFVKRAKN 197
+ G+GP A + +K G + + EG ++V+ A+N
Sbjct: 280 PKIPGIGPHKAWEGIKKYGSMEAFLESLDGTKYVVPEGFNYVE-ARN 325
>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
gi|28380020|sp|Q97B98.1|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
Length = 335
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ + K L +G+P ++ E EAQ + + + DG S D D LFGA+ + R+ +
Sbjct: 130 IVNDTKELLTYMGIPYVDAPSEGEAQASYMTRKD-ADGVISQDYDCLLFGAKKILRNFAI 188
Query: 121 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G R Y Y +D++ +K G ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNVYRTVYPEYVMLDEVLKKNGINQDQLIEIGILVGTDFNEGIKGIGAKKAL 248
Query: 170 QIVKSVGD-NVVLQRIA 185
++K G+ VL +I
Sbjct: 249 ALIKKEGNIKAVLNKIG 265
>gi|240103256|ref|YP_002959565.1| flap endonuclease-1 [Thermococcus gammatolerans EJ3]
gi|259645974|sp|C5A639.1|FEN_THEGJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|239910810|gb|ACS33701.1| Flap structure-specific endonuclease (fen) [Thermococcus
gammatolerans EJ3]
Length = 339
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +GVP ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 TLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAPRLVRNLT 189
Query: 120 LGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ R G V E ++++ R+LG R LI LA+L+G+DY+ G++G+GP+
Sbjct: 190 ITGRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 168 ACQIVKSVGD 177
A IVK D
Sbjct: 250 ALTIVKRSKD 259
>gi|393245000|gb|EJD52511.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 564
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 21/218 (9%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
+ G C+ EAEA+ A LN + D + D D FLFGA + R + + +V CY+
Sbjct: 123 AFGYECIHAHGEAEAELAYLNRIGVIDAVLTDDVDTFLFGATMIIRKCVVVDGNHVNCYK 182
Query: 131 MDDI--ERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVK-SVGDNVVLQRIAS 186
DD+ + + LI + L+ G DY Q GV+G+G A + + GD +V
Sbjct: 183 ADDLRTHEDIMLTQGGLILIGLMRGGDYHQAGVQGIGVGIARGLAECGFGDQLV------ 236
Query: 187 EGLSFVKRAKNSKKEGW--SFKCNNKEESLNQEINVNGTDHSLQRET-----PFSQVIDA 239
V+ K E + ++ + E + G H+ T P +V+DA
Sbjct: 237 ---EAVRTLKGDALETFLDQWRSDIVHELRTNSRGIIGKKHAKLASTFPIDFPDLKVVDA 293
Query: 240 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQW 277
Y NP S H + + L ++C Q F+W
Sbjct: 294 YVNP-VISEKKGVFHDIEWRREPDLTLLAKLCEQHFEW 330
>gi|409095300|ref|ZP_11215324.1| flap endonuclease-1 [Thermococcus zilligii AN1]
Length = 340
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I +AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LISDAKKLLELMGIPVVQAPSEGEAQAAYMAAKGKVYASASQDYDSLLFGAPKLVRNLTI 190
Query: 121 GER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 168
R G V E ++++ ++LG R LI LA+L+G+DY+ G++G+GP+ A
Sbjct: 191 TGRRKLPGKEVYVEVKPELIVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKA 250
Query: 169 CQIVKSVGD 177
IVK + D
Sbjct: 251 LMIVKRIND 259
>gi|396498478|ref|XP_003845243.1| similar to flap structure-specific endonuclease [Leptosphaeria
maculans JN3]
gi|312221824|emb|CBY01764.1| similar to flap structure-specific endonuclease [Leptosphaeria
maculans JN3]
Length = 935
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G P EAEA+CALL E + D S D D +FG+ R+ W E+
Sbjct: 104 AKQLLKQFGFPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGITLRN-WSPEKS 162
Query: 125 -----YVVCYEMDDIERK---LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y D IE K G R +I +AL+ G DY +G+ G GP++AC+ K+
Sbjct: 163 GNTPTHVNVY--DAIETKNGPSGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKA 219
>gi|346430351|emb|CCC55608.1| flap endonuclease-1 [uncultured archaeon]
Length = 343
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++++K L +GVP +E E EAQ A + + G S D D LFG+ + R++
Sbjct: 132 NYMVEDSKTLLDLMGVPWVEAPSEGEAQAAYMAARGVTWGSVSQDYDSLLFGSPRLVRNL 191
Query: 119 WLGERG-------YV-VCYEMDDIERKLGF---GRNSLITLALLLGSDYSQGVRGLGPES 167
+ R YV + EM + E+ L F R L+ + +L+G+D++ G++G+GP++
Sbjct: 192 TVSGRRKLPNKDVYVEISPEMIETEKLLKFYEITREQLVDIGILVGTDFNIGIKGIGPKT 251
Query: 168 ACQIVKSVG 176
A +++K G
Sbjct: 252 ALKLIKKYG 260
>gi|374628642|ref|ZP_09701027.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
gi|373906755|gb|EHQ34859.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
Length = 333
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I +K L +G+P L+ E EAQ A + E + D S D D LFGA + R++ +
Sbjct: 132 IIDSSKRLLSLMGIPYLDAPSEGEAQAAFMVSEGIVDYSVSQDYDSLLFGAEKLVRNLTV 191
Query: 121 GE----RGYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
RG + +D++ L R L+ + +L+G+D++ G+RG+GP+ A +I
Sbjct: 192 SRKRKIRGRTITVNPETISLDEVLSGLEITREQLVEIGILIGTDFNSGIRGIGPKKALKI 251
Query: 172 VK 173
V+
Sbjct: 252 VR 253
>gi|302764352|ref|XP_002965597.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
gi|300166411|gb|EFJ33017.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
Length = 552
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 68 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-ERGYV 126
LGL L VP L EAEA CA L + D C + DSD FL GAR V + + ++ V
Sbjct: 126 LGL-LNVPVLRATSEAEALCAELERNGVVDACVTPDSDAFLHGARCVIQTLQADIKKPLV 184
Query: 127 VCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQRIA 185
Y DI L R LI LALL+G DY+ +G+ G+G +A ++V+ + +L +
Sbjct: 185 ESYLASDIRLALQLEREHLIALALLVGCDYNLRGIPGVGYSNAMRLVQHFSKDEILDNLR 244
Query: 186 SEG 188
G
Sbjct: 245 KWG 247
>gi|407851500|gb|EKG05394.1| hypothetical protein TCSYLVIO_003532 [Trypanosoma cruzi]
Length = 393
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S + R E Q +D+ ++KMS + E ++EA
Sbjct: 89 FDGKPPTLKASELQERRQRAEEAQQLFDTAKEEGNDELMEKMSKRTVRVSRE---QLEEA 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L +G+P ++ EAEAQCA L ++ + D D FGA + R + E +
Sbjct: 146 KKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVATEDMDALTFGAPVMLRHLTYSEAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+ + +D+I G I L +LLG DY + G+GP+ A + +K GD L
Sbjct: 206 RPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVPKISGIGPQKAWEGIKKHGDIETL-- 263
Query: 184 IASEGLSFVKRAKNSKKEGWSFK 206
L + ++S EG+ ++
Sbjct: 264 -----LQSLDAGRHSVPEGFHYE 281
>gi|403222552|dbj|BAM40684.1| 5'-3' exonuclease [Theileria orientalis strain Shintoku]
Length = 824
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 20 PAIKLSTY----RRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC---MIKEAKALGLSL 72
P +KL T +RR + + + Q DK S+++ MG M AK L +
Sbjct: 92 PELKLKTLEKRRQRREEASTSLKQAIAEGDK-ESIKKLMGRTVKVTKEMNDSAKKLLRLM 150
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
GVP +E EEAEAQCA L SLC S D+D FG + R++ +V ++
Sbjct: 151 GVPVIEAPEEAEAQCAYLVRNSLCRFVASEDTDTLAFGGGYLLRNVTASSNKKIVKVDLQ 210
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ L + +L G DY + G+GP++A +VK
Sbjct: 211 KALKGLDLTFEQFVDFCILCGCDYCDTLEGVGPKTAYTLVK 251
>gi|257077017|ref|ZP_05571378.1| flap endonuclease-1 [Ferroplasma acidarmanus fer1]
Length = 339
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 37 VTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLC 96
+ ++K+ +K+ +L + + ++ E+K L +GVP ++ E EAQ + ++
Sbjct: 107 LAMENKDAEKIKTLSSRINYITADIVSESKKLLDMMGVPWVQAPSEGEAQASYMSKVGAV 166
Query: 97 DGCFSSDSDIFLFGARTVYRDIWLGERGYV--------VCYEMDDIER---KLGFGRNSL 145
D S D D L GAR V R+ + R + + E+ D++ LG ++ L
Sbjct: 167 DSVISQDYDCLLLGARRVLRNFTMYGRRRISGTGKFINITPEIIDLKENLDNLGITQDQL 226
Query: 146 ITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
I + +L+G+D++ G+RG+G ++ ++K GD
Sbjct: 227 IGIGILVGTDFNPGIRGIGAKTGLSLIKKYGD 258
>gi|390961742|ref|YP_006425576.1| flap endonuclease-1 [Thermococcus sp. CL1]
gi|390520050|gb|AFL95782.1| flap endonuclease-1 [Thermococcus sp. CL1]
Length = 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 17/143 (11%)
Query: 47 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
M + R N G +I +AK L +G+P ++ E EAQ A + + S D D
Sbjct: 122 MRATRVNEG-----LINDAKKLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDS 176
Query: 107 FLFGARTVYRDIWL-------GERGYVVCYE----MDDIERKLGFGRNSLITLALLLGSD 155
LFGA + R++ + G+ YV ++++ ++LG R LI +A+L+G+D
Sbjct: 177 LLFGAPRLVRNLTITGRRKLPGKNAYVEVKPELVVLEEVLKELGVDREKLIEMAILVGTD 236
Query: 156 YSQ-GVRGLGPESACQIVKSVGD 177
Y+ G++G+GP+ A IVK D
Sbjct: 237 YNPGGIKGIGPKKALTIVKRTKD 259
>gi|397642742|gb|EJK75426.1| hypothetical protein THAOC_02851 [Thalassiosira oceanica]
Length = 704
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 55 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 114
GS F + + LGV LE E E CALLN + DG SSD D FL+GAR +
Sbjct: 162 GSHFMSTSRRCGEVLRLLGVTVLEAEAEGEQLCALLNSRGIVDGVVSSDGDAFLYGARVI 221
Query: 115 YRDIWLGE--RGYVVCYEMDDIERKLGFG-----RNSLITLALLLGSDYSQGVRGLGPES 167
Y+ + +G V+ Y+ +++ G R L+ A L GSD QGV+ LG +
Sbjct: 222 YKGFTMDNLTKGSVLKYDANELRVASSHGNFPLSREDLVAFAALSGSDVFQGVQHLGWKK 281
Query: 168 A 168
A
Sbjct: 282 A 282
>gi|444323741|ref|XP_004182511.1| hypothetical protein TBLA_0I03380 [Tetrapisispora blattae CBS 6284]
gi|387515558|emb|CCH62992.1| hypothetical protein TBLA_0I03380 [Tetrapisispora blattae CBS 6284]
Length = 865
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI-- 118
+K K L L +P L+ E EAQCA LN+ ++DSD +FG + + R+
Sbjct: 159 FLKSVKKLLDHLNIPYLQACGEGEAQCAWLNINRYVHYVLANDSDTLMFGCKNMLRNFSK 218
Query: 119 WLGERG------------------YVVCYEMDDIERK--LGFGRNSLITLALLLGSDYSQ 158
+ ++G +V MD+++++ R SL+ ++LLG+DY+
Sbjct: 219 FWDDKGATAGSGSSPEKHRDNKEYFVTVINMDEVQKQSIHRIDRWSLLFFSVLLGADYND 278
Query: 159 GVRGLGPESACQIVKSVGDNV------VLQRIASEGLSFVKRAKNSKKEGWSFKCNN 209
GV+GLG A ++ S + + + I E +++ + KKE + + C N
Sbjct: 279 GVKGLGKVKAAKLSYSTAPDFSLKFRKIFENIDQEKKRRIEKYDSFKKEVFEY-CKN 334
>gi|451854672|gb|EMD67964.1| hypothetical protein COCSADRAFT_187007 [Cochliobolus sativus
ND90Pr]
Length = 934
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G P EAEA+CALL E + D S D D +FG+ R+ W E+
Sbjct: 109 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLRN-WSPEKS 167
Query: 125 -----YVVCYEMDDIERK---LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y D +E K G R +I +AL+ G DY +G+ G GP++AC+ K+
Sbjct: 168 GKTPTHVNVY--DAVETKNGPSGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKA 224
>gi|189192965|ref|XP_001932821.1| flap structure-specific endonuclease [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978385|gb|EDU45011.1| flap structure-specific endonuclease [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 936
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G P EAEA+CALL E + D S D D +FG+ R+ W E+
Sbjct: 104 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGITIRN-WSPEKS 162
Query: 125 -----YVVCYEMDDIERK---LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y D +E K G R +I +A++ G DY +G+ G GP++AC+ K+
Sbjct: 163 GNTPTHVNVY--DAVETKNGQSGLDREGMILVAMMSGGDYVPEGIPGCGPKTACEAAKA 219
>gi|452000823|gb|EMD93283.1| hypothetical protein COCHEDRAFT_1223047 [Cochliobolus
heterostrophus C5]
Length = 926
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G P EAEA+CALL E + D S D D +FG+ R+ W E+
Sbjct: 109 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLRN-WSPEKS 167
Query: 125 -----YVVCYEMDDIERK---LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y D +E K G R +I +AL+ G DY +G+ G GP++AC+ K+
Sbjct: 168 GKTPTHVNIY--DAVETKNGPSGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKA 224
>gi|393905975|gb|EFO24532.2| hypothetical protein LOAG_03953 [Loa loa]
Length = 498
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E K L S+GV +E E EAQCA L L GC + D D LFG +Y+ + G
Sbjct: 116 VEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRGLVHGCIARDFDYILFGGNNLYQ-VEFG 174
Query: 122 ERGY----VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIV 172
G ++ MD ++ L R+ LI + +++G DY+Q G+ G+G +A +IV
Sbjct: 175 FSGKIQNNILHLSMDYLDETLCLSRSCLIAMTIMIGCDYAQKGIPGVGLVTALEIV 230
>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
gi|343485003|dbj|BAJ50657.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
Length = 344
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M++ A L ++GVP + E EAQ A + + S D D LFG+ + R++ +
Sbjct: 134 MVESAADLLKAMGVPYVMAPSEGEAQAAYMAAKGSVYAAGSQDMDSLLFGSPRLVRNLSI 193
Query: 121 -------GERGYV-----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
G + YV + Y +D + LG R LI + LL+G+DYS VRG+GP++A
Sbjct: 194 VGRRKLPGRKEYVEVVPEIIY-LDKLLASLGLTREQLIDIGLLVGTDYSPQVRGVGPKTA 252
Query: 169 CQIVKSVG 176
+IVK G
Sbjct: 253 LKIVKEYG 260
>gi|407414008|gb|EKF35678.1| hypothetical protein MOQ_002324 [Trypanosoma cruzi marinkellei]
Length = 393
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S + R E Q +D+ ++KMS + E ++EA
Sbjct: 89 FDGKPPTLKASELQERRQRAEEAQQLFDTAKEEGNDELMEKMSKRTVRVSRE---QLEEA 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L +G+P ++ EAEAQCA L ++ + D D FGA + R + E +
Sbjct: 146 KKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVATEDMDALTFGAPVMLRHLTYSEAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+ + +D+I G I L +LLG DY + G+GP+ A + +K GD L
Sbjct: 206 RPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVPKIPGIGPQKAWEGIKKHGDIETL-- 263
Query: 184 IASEGLSFVKRAKNSKKEGWSFK 206
L + ++S EG+ ++
Sbjct: 264 -----LQSLDAGRHSVPEGFHYE 281
>gi|298675706|ref|YP_003727456.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
gi|298288694|gb|ADI74660.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
Length = 338
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 11/125 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ +AK L S+G+P L+ E EAQ A + + D S D D LFGA V R++ +
Sbjct: 131 ILDDAKYLLESMGIPYLQSPSEGEAQAAHMVQKGDADYVGSQDYDALLFGAPHVIRNLTI 190
Query: 121 -------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ Y+ +M++ + +G R+ LI +AL +G+DY++G+ +GP+ A
Sbjct: 191 TGKRKLPGKNTYIDLKPETIDMEENLKSMGITRSKLIDIALCVGTDYNKGLEKIGPKRAL 250
Query: 170 QIVKS 174
++VK+
Sbjct: 251 KLVKT 255
>gi|71652611|ref|XP_814958.1| flap endonuclease-1 (FEN-1) [Trypanosoma cruzi strain CL Brener]
gi|122023721|sp|Q4DKQ5.1|FEN1_TRYCC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|70879977|gb|EAN93107.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
Length = 393
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 21/203 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S + R E Q +D+ ++KMS + E ++EA
Sbjct: 89 FDGKPPTLKASELQERRQRAEEAQQLFDTAKEEGNDELMEKMSKRTVRVSRE---QLEEA 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L +G+P ++ EAEAQCA L + + D D FGA + R + E +
Sbjct: 146 KKLLQLMGIPVVQAPSEAEAQCAELVKKKKAWAVATEDMDALTFGAPVMLRHLTYSEAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+ + +D+I G I L +LLG DY + G+GP+ A + +K GD L
Sbjct: 206 RPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVPKIPGIGPQKAWEGIKKHGDIETL-- 263
Query: 184 IASEGLSFVKRAKNSKKEGWSFK 206
L + ++S EG+ ++
Sbjct: 264 -----LQSLDAGRHSVPEGFHYE 281
>gi|341583087|ref|YP_004763579.1| flap endonuclease-1 [Thermococcus sp. 4557]
gi|340810745|gb|AEK73902.1| flap endonuclease-1 [Thermococcus sp. 4557]
Length = 341
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 47 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
M + R N G +I +AK L +G+P ++ E EAQ A + S D D
Sbjct: 122 MRATRVNEG-----LINDAKRLLELMGIPVIQAPSEGEAQAAYMAARKKVYASASQDYDS 176
Query: 107 FLFGARTVYRDIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSD 155
LFGA + R++ + R G V E ++++ ++LG R LI +A+L+G+D
Sbjct: 177 LLFGAPRLVRNVTITGRRKLPGKNVYVEVRPELIVLEEVLKELGIDREKLIEMAILVGTD 236
Query: 156 YSQ-GVRGLGPESACQIVKSVGD 177
Y+ G++G+GP+ A IVK D
Sbjct: 237 YNPGGIKGIGPKKALTIVKRTKD 259
>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
dendrobatidis JAM81]
Length = 388
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 21/203 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEV---------TQDDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K ++R +E T D +N ++ S + E + +E
Sbjct: 86 FDGKPPTLKSGELQKRGERRAEAQKEADTALETGDTENFNRFSRRTVKVTKEQN---QEC 142
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
+ L +G+P +E EAEAQCA L S D D FGA + R + E
Sbjct: 143 RRLLKLMGIPIVEAPCEAEAQCAALAKAGKVYAAGSEDMDTLTFGAPVLLRHLTFSEAKK 202
Query: 126 VVCYEMD--DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+ E + + L F + I L +LLG DY +RG+GP A Q++K R
Sbjct: 203 IPISEFNTQKVLEGLNFSHDEFIDLCILLGCDYCDSIRGIGPHRAVQLMKE-------HR 255
Query: 184 IASEGLSFVKRAKNSKKEGWSFK 206
+ + + K E W FK
Sbjct: 256 TIENIIKSIDKTKYKVPENWPFK 278
>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
Length = 342
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + ++ S D D LFGA + R++
Sbjct: 130 MLIEDAKQLLQLMGIPIVQAPSEGEAQAAYMAMKGDVYASASQDYDSLLFGAPRLVRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G V E ++D+ +L R LI LA+L+G+DY+ G++G+GP+
Sbjct: 190 ITGKRKMPGKDVYVEVKPELIILEDVLNQLKITREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 168 ACQIVKSVGD 177
A +IVK D
Sbjct: 250 ALEIVKYSKD 259
>gi|118596596|dbj|BAF37957.1| flap endonuclease-1 [Thermoplasma sp. S01]
Length = 336
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 13/139 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ + K L +G+P ++ E EAQ + + +++ DG S D D LFGAR V R+ +
Sbjct: 130 IVNDTKKLLDYMGIPYVDAPSEGEAQASYMTRKNV-DGVISQDYDCLLFGARKVLRNFAI 188
Query: 121 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G R Y Y +D++ ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKAL 248
Query: 170 QIVKSVGD-NVVLQRIASE 187
++K GD VL+RI +
Sbjct: 249 ALIKKEGDIKAVLRRIGKD 267
>gi|312073479|ref|XP_003139538.1| hypothetical protein LOAG_03953 [Loa loa]
Length = 498
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR-DIWL 120
++E K L S+GV +E E EAQCA L L GC + D D LFG +Y+ +
Sbjct: 116 VEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRGLVHGCIARDFDYILFGGNNLYQARVEF 175
Query: 121 GERGY----VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIV 172
G G ++ MD ++ L R+ LI + +++G DY+Q G+ G+G +A +IV
Sbjct: 176 GFSGKIQNNILHLSMDYLDETLCLSRSCLIAMTIMIGCDYAQKGIPGVGLVTALEIV 232
>gi|57641216|ref|YP_183694.1| flap endonuclease-1 [Thermococcus kodakarensis KOD1]
gi|73919352|sp|Q5JGN0.1|FEN_PYRKO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57159540|dbj|BAD85470.1| flap structure-specific endonuclease [Thermococcus kodakarensis
KOD1]
Length = 340
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I +AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNLTI 190
Query: 121 GER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 168
R G V E ++++ ++LG R LI LA+L+G+DY+ G++G+GP+ A
Sbjct: 191 TGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKA 250
Query: 169 CQIVKSVGD 177
IVK D
Sbjct: 251 LTIVKRTKD 259
>gi|242211748|ref|XP_002471711.1| predicted protein [Postia placenta Mad-698-R]
gi|220729267|gb|EED83145.1| predicted protein [Postia placenta Mad-698-R]
Length = 642
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 64 EAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
E+K + ++G+PCL+ G EAEA + L L D S D+D+ ++ A + R+I
Sbjct: 441 ESKEILSAMGIPCLDSTGPFEAEALASALVLNGYADYVASEDTDVLVYDAPLI-RNI-TN 498
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+G +V D+ L R+S + AL+LG+D+SQ ++ +GP A + ++ G
Sbjct: 499 RKGPLVVISGTDVREHLRLDRSSFVDFALMLGTDFSQRIKNVGPARALKFIREYG 553
>gi|330914144|ref|XP_003296510.1| hypothetical protein PTT_06636 [Pyrenophora teres f. teres 0-1]
gi|311331271|gb|EFQ95374.1| hypothetical protein PTT_06636 [Pyrenophora teres f. teres 0-1]
Length = 934
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G P EAEA+CALL E + D S D D +FG+ R+ W E+
Sbjct: 104 AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGITIRN-WSPEKS 162
Query: 125 -----YVVCYEMDDIERK---LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y D +E K G R +I +A++ G DY +G+ G GP++AC+ K+
Sbjct: 163 GNTPTHVNVY--DAVETKNGQSGLDREGMILVAMMSGGDYVPEGIPGCGPKTACEAAKA 219
>gi|118596628|dbj|BAF37974.1| flap endonuclease-1 [Thermoplasma sp. P61]
Length = 328
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ + K L +G+P ++ E EAQ + + +++ DG S D D LFGAR + R+ +
Sbjct: 130 IVDDTKKLLDYMGIPYIDAPSEGEAQASYMTKKNV-DGVISQDYDCLLFGARKILRNFAI 188
Query: 121 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G R Y Y +D++ ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKAL 248
Query: 170 QIVKSVGD-NVVLQRIA 185
++K GD VL+RI
Sbjct: 249 ALIKKEGDIKAVLRRIG 265
>gi|341885112|gb|EGT41047.1| hypothetical protein CAEBREN_21721 [Caenorhabditis brenneri]
Length = 833
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P +E EAEAQC L L DG S DSD++ FG + VYR ++ R E
Sbjct: 487 GIPWIEAPGEAEAQCVELERLGLVDGVVSDDSDVWAFGVKHVYRHMFSKNRKVQRYGERT 546
Query: 133 DIERK----LGFGRNSLITLALLLGSDYSQGVRGLGPESA---------CQIVKSVGDNV 179
RK R +++ALL G DYS G+ +G A C+I K+ ++
Sbjct: 547 TANRKNCNLFCLEREDYVSIALLSGGDYSSGLYKVGAIGALELVSEFVECRIDKTENLDL 606
Query: 180 VLQRI 184
V QRI
Sbjct: 607 VEQRI 611
>gi|333910543|ref|YP_004484276.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
gi|333751132|gb|AEF96211.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
Length = 326
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 12/227 (5%)
Query: 15 LNGSIPAIKLSTY--RRRL--NSGSEVTQ--DDKNLDKMSSLRRNMGSEFSCMIKEAKAL 68
+G P +K T RR++ + E T+ + +N+D+M + M +++ +K L
Sbjct: 79 FDGKPPKLKEKTREERRKMREKAKEEFTKAKEMENIDEMQKYAKRMNFLTKDIVENSKKL 138
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 128
+GVP + E E Q + + + S D D L+GA + R++ + +
Sbjct: 139 LDLMGVPYVNAPAEGEGQASYMAKKGDVFCVISQDYDALLYGAPRIVRNL-TATKEELEL 197
Query: 129 YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQRIASE 187
E++++ +LG + LI +A+L+G+DY+ +GV+G+GP+ A +IVKS + L+ A E
Sbjct: 198 IELENVLNELGISHDDLIDMAILIGTDYNPKGVKGIGPKKALEIVKSKNKELYLK--AVE 255
Query: 188 GLSFVKRA-KNSK-KEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 232
+K KN K + +S K ++ + V D S++R P
Sbjct: 256 NYEEIKNIFKNPKVTDEYSIKLKKPDKEGIIKFLVEENDFSMERVQP 302
>gi|389860888|ref|YP_006363128.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
gi|388525792|gb|AFK50990.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
Length = 353
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 18/180 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL---RRN--MGSEFSC-MIKEAKAL 68
+G+ P +K+ RR E + + K L RR M S+ + M++EAK L
Sbjct: 83 FDGNPPELKIKELERRKALREEAAKKYEEAVKEGDLEAARRYAMMSSKLTSDMVEEAKRL 142
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-GER---- 123
+G+P ++ E EAQ A + S D D LFG+ + R++ + G+R
Sbjct: 143 LKVMGIPWVQAPAEGEAQAAFMVRRGDAYASASQDYDSLLFGSPRLVRNLTISGKRKLPR 202
Query: 124 --GYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVG 176
YV E+ + KLG R LI + +LLG+DY+ +G G+GP++A ++++ G
Sbjct: 203 KDAYVEVKPEVIELSKLTEKLGITREQLIDIGILLGTDYNPEGFEGIGPKTALTLIRTYG 262
>gi|448534324|ref|ZP_21621652.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
gi|445704806|gb|ELZ56713.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
Length = 325
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
L R L+ A+L G+D+++GVRG+GP++A V+ GD
Sbjct: 202 AATLSDLDLDRQGLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHGD 247
>gi|17555016|ref|NP_498361.1| Protein GEN-1 [Caenorhabditis elegans]
gi|351050616|emb|CCD65214.1| Protein GEN-1 [Caenorhabditis elegans]
Length = 434
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 21/156 (13%)
Query: 51 RRNMG-SEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
RR+ G S F+ ++ + AL LG+ + + EAQCA L + GC ++D D
Sbjct: 98 RRSFGDSPFTNLVDHVYKTNALLTELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDY 157
Query: 107 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLG-------FGRNSLITLALLLGSDYSQ- 158
FLFG + +YR + C D + LG R LI+ A+LLG DY Q
Sbjct: 158 FLFGGKNLYRFDFTAGTSSTACLH-DIMHLSLGRMFMEKKVSRPHLISTAILLGCDYFQR 216
Query: 159 GVRGLGPESACQIVKSVGD--------NVVLQRIAS 186
GV+ +G S I+ GD +V+L R AS
Sbjct: 217 GVQNIGIVSVFDILGEFGDDGNEEIDPHVILDRFAS 252
>gi|401429746|ref|XP_003879355.1| putative DNA repair protein RAD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495605|emb|CBZ30910.1| putative DNA repair protein RAD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 930
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
GVP + EA+AQCA L L D F+ DSD+ + GA TV R + + VV YE
Sbjct: 650 GVPYVLSPAEADAQCAFLARCGLVDAVFTEDSDVLVHGATTVLRG-FFAQSKNVVAYEQT 708
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
+ G + L+ LA LLG DY++GV G+G
Sbjct: 709 HLS-ACGITKTVLVALASLLGCDYTEGVCGIG 739
>gi|307352874|ref|YP_003893925.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
gi|307156107|gb|ADN35487.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
Length = 333
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I K L +G+PC++ + E EAQ A + + S D D LFGA + R++
Sbjct: 131 TIIAGTKELLGYMGIPCIDAMSEGEAQAAYMAMNGDVRYSISQDYDSLLFGAPRLVRNLT 190
Query: 120 LGE----RGYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+ RG V+ + D+ G R LI + +L+G+D++ GV+G+G ++A +
Sbjct: 191 VSRKRKVRGRVITVNPEEILLSDLLDGKGITREELIEIGILVGTDFNSGVKGVGAKTALK 250
Query: 171 IVKS 174
IVKS
Sbjct: 251 IVKS 254
>gi|398023565|ref|XP_003864944.1| DNA repair protein RAD2, putative [Leishmania donovani]
gi|322503180|emb|CBZ38264.1| DNA repair protein RAD2, putative [Leishmania donovani]
Length = 930
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
GVP + EA+AQCA L L D F+ DSD+ + GA TV R + + VV YE
Sbjct: 650 GVPYVLSPAEADAQCAFLARCGLVDAVFTEDSDVLVHGATTVLRG-FFAQSKNVVAYEQT 708
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
+ G + L+ LA LLG DY++GV G+G
Sbjct: 709 HLS-ACGITKTVLVALASLLGCDYTEGVCGIG 739
>gi|320101275|ref|YP_004176867.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
gi|319753627|gb|ADV65385.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
Length = 356
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++AKAL ++G+P ++ E EAQ A + + S D D LFG+ + R++ +
Sbjct: 135 MVRDAKALLDAMGIPWVQAPAEGEAQAAYMARKGDAYASASQDYDSLLFGSPRLVRNLTI 194
Query: 121 GER-------GYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
R YV E+D + KLG +L+ + +LLG+DY+ G G+GP+ A
Sbjct: 195 SGRRKLPRREEYVEVKPEVIELDKLLSKLGVTYENLVDIGILLGTDYNPDGFEGIGPKKA 254
Query: 169 CQIVKSVG 176
Q+VK G
Sbjct: 255 LQLVKVYG 262
>gi|146101653|ref|XP_001469167.1| putative DNA repair protein RAD2 [Leishmania infantum JPCM5]
gi|134073536|emb|CAM72269.1| putative DNA repair protein RAD2 [Leishmania infantum JPCM5]
Length = 930
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
GVP + EA+AQCA L L D F+ DSD+ + GA TV R + + VV YE
Sbjct: 650 GVPYVLSPAEADAQCAFLARCGLVDAVFTEDSDVLVHGATTVLRG-FFAQSKNVVAYEQT 708
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
+ G + L+ LA LLG DY++GV G+G
Sbjct: 709 HLS-ACGITKTVLVALASLLGCDYTEGVCGIG 739
>gi|449304737|gb|EMD00744.1| hypothetical protein BAUCODRAFT_29098 [Baudoinia compniacensis UAMH
10762]
Length = 962
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G P EAEA+CALL E + D S D D +FG+ +R W E
Sbjct: 107 AKQLLKEFGFPWHIAPGEAEAECALLQREGVVDAVLSEDVDTLMFGSGVTFRS-WSAEGS 165
Query: 125 ------YVVCY-EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y E + +R G R+ +I +AL+ G DY +G+ G GP+ AC ++
Sbjct: 166 TTKSPTHVSVYREEETKQRSRGLDRDGMILVALMSGGDYLPEGIPGCGPKVACDAARA 223
>gi|52549222|gb|AAU83071.1| DNA repair protein [uncultured archaeon GZfos26E7]
Length = 339
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+ +AK+L S+G+P +E E EAQ A + S D D LFGA V R++ +
Sbjct: 131 MVADAKSLLTSMGIPVVEAASEGEAQAARMARSGDVRFVGSQDYDSLLFGAPEVVRNLAV 190
Query: 121 GER------GYVVCYEMDDIE-----RKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G + V +++ IE +LG + LI +A+L+G+DY G+ G+G + A
Sbjct: 191 GGKRKLPGKNVYVDVKLEIIELQPNLDRLGITQEQLIDIAILVGTDYDPGIHGIGAKKAL 250
Query: 170 QIVKSVG 176
Q++ G
Sbjct: 251 QLIYKHG 257
>gi|386001444|ref|YP_005919743.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
gi|357209500|gb|AET64120.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
Length = 336
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI +A L ++G+P ++ E EAQ A + ++ D S D D LFGA V R++ +
Sbjct: 129 MIADAMRLLEAMGIPAVQAPSEGEAQAAFMAIKGDVDLVGSQDYDALLFGAPRVVRNMAI 188
Query: 121 -------GERGYVVCY----EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV +D+ +LG R L+ + ++ G+DY++G++ +GP++A
Sbjct: 189 TGKRKLPGKNVYVEVMPEVISLDEELLRLGIARRQLVEIGIMCGTDYNEGLKRVGPKTAL 248
Query: 170 QIVKSVGD 177
+++K G+
Sbjct: 249 KLIKEHGN 256
>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
gi|166973703|sp|A5UL52.1|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
[Methanobrevibacter smithii ATCC 35061]
Length = 327
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I+ +K L +G+P +E E EAQ A L S D D LFGA+ V R++ +
Sbjct: 131 IIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAI 190
Query: 121 GER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
G + Y + + +L R LI + +L+G+D+S+G++G+G ++A ++ K
Sbjct: 191 NSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAK 244
>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
Length = 327
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I+ +K L +G+P +E E EAQ A L S D D LFGA+ V R++ +
Sbjct: 131 IIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAI 190
Query: 121 GER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
G + Y + + +L R LI + +L+G+D+S+G++G+G ++A ++ K
Sbjct: 191 NSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAK 244
>gi|336122204|ref|YP_004576979.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
gi|334856725|gb|AEH07201.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
Length = 324
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 39 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 98
+++ NL+ M + + +++ +K L +G+P + E EAQC+ + +
Sbjct: 109 KEEGNLEDMQKYAKRINYLEPKVVENSKRLLNLMGIPFINAPSEGEAQCSYMAKKGDVYA 168
Query: 99 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS- 157
S D D L+GA R+I + + E+D++ L ++LI +A+L+G+DY+
Sbjct: 169 VVSQDYDALLYGAPRTVRNITASNKPLELI-ELDEVLGALNITLDNLIDMAILIGTDYNI 227
Query: 158 QGVRGLGPESACQIVKS 174
GV+G+GP+ A IVK+
Sbjct: 228 GGVKGIGPKKALDIVKN 244
>gi|223477291|ref|YP_002581507.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
gi|214032517|gb|EEB73347.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
Length = 339
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +GVP ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 TLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMASKKKVYASASQDYDSLLFGAPRLVRNLT 189
Query: 120 LGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ R G V E ++++ ++LG R LI LA+L+G+DY+ G++G+GP+
Sbjct: 190 ITGRRKLPGKNVYVEVKPELIILEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 168 ACQIVKSVGD 177
A IVK D
Sbjct: 250 ALTIVKRSKD 259
>gi|302769318|ref|XP_002968078.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
gi|300163722|gb|EFJ30332.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
Length = 552
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 68 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA----RTVYRDIWLGER 123
LGL L VP L EAEA CA L + D C + DSD FL GA +T+ DI ++
Sbjct: 126 LGL-LNVPVLRATSEAEALCAELERNGVVDACVTPDSDAFLHGASCVIQTLQADI---KK 181
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQ 182
V Y DI L R LI LALL+G DY+ +G+ G+G +A ++V+ + +L
Sbjct: 182 PLVESYLASDIRLALQLEREHLIALALLVGCDYNLRGIPGVGYSNAMRLVQHFSKDEILD 241
Query: 183 RIASEG 188
+ G
Sbjct: 242 NLRKWG 247
>gi|409044610|gb|EKM54091.1| hypothetical protein PHACADRAFT_185071 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1025
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 54/257 (21%)
Query: 53 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 112
N+ EF MI+ G+ EAEA+ A LN + + D + D D +FGAR
Sbjct: 110 NLTQEFKAMIE-------CFGMEWRMARGEAEAELAYLNAQGIIDAIITDDVDTLVFGAR 162
Query: 113 TVYRDI--------------WLGERG--YVVCYEMDDI--ERKLGFGRNSLITLALLLGS 154
TV R+ LG++ + + + D I +G R ++ +ALL G
Sbjct: 163 TVIRNSSITLAGNRNNPATDALGQKSDQHTMVFTSDRIGSHPNIGLTRGGMVLIALLSGG 222
Query: 155 DYSQGVRGLGPESACQIVK-SVGDNVVLQRIASEGL--SFVKRAKNSKKEGWSFKCNNKE 211
DY GV+GLGP+ A + + GD ++ E +++ R W
Sbjct: 223 DYDNGVKGLGPKIAHGLARCGFGDRLLTAYRTGEAHFRAYLPR--------W-------R 267
Query: 212 ESLNQEINVNG--------TDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHL-- 261
+ LN E+ N + ++ P + AY NP C + + + + Q
Sbjct: 268 DELNTELRTNASGMLPHCCSSAAVSPNWPDMITLTAYFNPVCSALNGQGTSSLALQDRDD 327
Query: 262 FQHARLHQVCAQFF-QW 277
RL + C F +W
Sbjct: 328 LSLPRLAKFCEDHFDEW 344
>gi|330946192|ref|XP_003306714.1| hypothetical protein PTT_19920 [Pyrenophora teres f. teres 0-1]
gi|311315693|gb|EFQ85213.1| hypothetical protein PTT_19920 [Pyrenophora teres f. teres 0-1]
Length = 607
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 106/254 (41%), Gaps = 43/254 (16%)
Query: 46 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 105
K SS R M + +IKEA LGVP ++ EAEA C L L D +S DSD
Sbjct: 96 KPSSKGRLMKAGARAIIKEALK---GLGVPHIDAPGEAEADCCKLQTLGLVDAVWSQDSD 152
Query: 106 IFLFGARTVYRDI-----------WLGE------RGYVVCYEMDDIERKLGFGRNSLITL 148
+FG R++ +G+ R VV E IE + R+ +
Sbjct: 153 CLMFGCTVWIRELRTAREPGNNSRHIGDTQKDHKRVRVVRAENLKIE-GVQLERDDFVLF 211
Query: 149 ALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKC 207
A+L G D+ +QG+ G GP+ A +K +G N+ G S R + + W
Sbjct: 212 AMLKGGDFDTQGLPGCGPKIA---LKLLGANL--------GRSLCSRKSQQECDIW---- 256
Query: 208 NNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADS----EAVHRVLAQHLFQ 263
+EE L + + D ++ R P ++ Y++PK +S ++ H Q +
Sbjct: 257 --REEVLRKVLERQSIDIAIPRTWPRFDILQKYNDPKTHSEEALRNNALTHSNYDQPPNE 314
Query: 264 HARLHQVCAQFFQW 277
LH C F W
Sbjct: 315 ADLLHTACIYFNFW 328
>gi|448431107|ref|ZP_21584935.1| flap endonuclease-1 [Halorubrum tebenquichense DSM 14210]
gi|445688254|gb|ELZ40519.1| flap endonuclease-1 [Halorubrum tebenquichense DSM 14210]
Length = 325
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTADHAGSEDYDALLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
L R L+ A+L G+D+++GVRG+GP++A V+ GD
Sbjct: 202 AATLSDLDLDRQGLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHGD 247
>gi|290559766|gb|EFD93090.1| XPG I domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 332
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 24/178 (13%)
Query: 15 LNGSIPAIKLSTYRRR--------LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAK 66
+G P K T + R + + + VTQ+++ + R + ++ +K
Sbjct: 79 FDGKAPRFKKETLKERESIKEEARIKAENAVTQEERAM-----YMRRLSRIDDYIVASSK 133
Query: 67 ALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI------WL 120
L +GV ++ E EAQ A ++ + L S D D LFGA+ V R++ +
Sbjct: 134 ELLDYMGVKYVQAPAEGEAQAAWMSGKGLVYAAASQDYDTILFGAKRVIRNLNINNKRKI 193
Query: 121 GERGYVVCYEMDDIE-----RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+G V + IE +KLG R +I +AL G+DY++GV G+GP A +VK
Sbjct: 194 SRKGITVQVNPEIIESDYNLKKLGVDREKMIVVALFTGTDYNKGVDGIGPRKALNLVK 251
>gi|340717150|ref|XP_003397050.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Bombus
terrestris]
Length = 381
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
E K L +G+P ++ EAEAQCA L + D D FG + R + E
Sbjct: 140 ETKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNILLRRLTFSEA 199
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+ V + D + LG N I L ++LG DY+ ++G+GP+ A +++K+ G L
Sbjct: 200 RKMPVQEFHFDKVLEDLGLNHNEFIDLCIMLGCDYTSSIKGVGPKRAIELIKTHGS---L 256
Query: 182 QRIASEGLSFVKRAKNSKKEGWSFK 206
++I + K S E W++K
Sbjct: 257 EKIVEN----LDTKKFSIPEDWNYK 277
>gi|126460720|ref|YP_001056998.1| flap endonuclease-1 [Pyrobaculum calidifontis JCM 11548]
gi|166973705|sp|A3MY15.1|FEN_PYRCJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126250441|gb|ABO09532.1| flap endonuclease 1 [Pyrobaculum calidifontis JCM 11548]
Length = 346
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M+++AK L +G+P ++ E EAQ A + C S D D LFG+ + R++
Sbjct: 133 SEMVEDAKKLLTYMGIPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNL 192
Query: 119 WLGERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 167
+ + V E+D + + L GR LI LA+LLG+DY+ +GV G+GP+
Sbjct: 193 AVSPKRKVGEEVVELSPELIELDAVLKSLKLKGREQLIDLAILLGTDYNPEGVPGVGPQK 252
Query: 168 ACQIVKSVGDNVVLQRIASEGLSF 191
A +++ G L + +G+ F
Sbjct: 253 ALKLIWEFGSLEKLLQTVLKGVQF 276
>gi|388854784|emb|CCF51677.1| probable DNA repair endonuclease rad2 [Ustilago hordei]
Length = 374
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 20/239 (8%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEF 58
+ Y + +G+ P +K ++R E +D +++KM L R
Sbjct: 76 IDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQQEEQKDVADVEKMDQLARRQVRPT 135
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+E + L +G+PC+ EAEAQCA L S D D FG + + +
Sbjct: 136 RQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHL 195
Query: 119 WLGERGYVVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
E+ + +++D + G G + I L +LLG DY ++G+GP++A ++++
Sbjct: 196 TASEQKKLPVHQVDLPKALEGLGMDMAQFIDLCILLGCDYLDPIKGIGPKTALKLIR--- 252
Query: 177 DNVVLQRIASEGLSFVKRAKNSKK--EGWSFKCNNKEESLNQEINVN-GTDHSLQRETP 232
++ L+++ F + AK S + E W F+ K + + +V G D L+ ETP
Sbjct: 253 EHKTLEKVVEH---FKEEAKKSVQIPEHWPFQEARK---IFENPHVQKGKDLDLKWETP 305
>gi|317374903|sp|D3TQJ5.1|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
Length = 382
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +GVP +E EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSGILLRHLTFSEA 199
Query: 124 GYVVCYEMDDIERKLGFGRNS--LITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 180
+ E + GFG S I L +LLG DY G+RG+GP+ A +++ S D +
Sbjct: 200 RKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIRGIGPKRATELMNSYKDIETI 259
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI 218
L++I R K + E W+++ +E +N E+
Sbjct: 260 LEKI--------DRKKYTVPEDWNYQI-ARELFVNPEV 288
>gi|352681676|ref|YP_004892200.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
gi|350274475|emb|CCC81120.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
Length = 346
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
M ++AKAL ++G+P ++ E EAQ A + + G S D D LFGA + R++
Sbjct: 134 SMAEDAKALLTAMGIPWVQAPSEGEAQAAHMAAKGSAWGAGSQDYDSLLFGAPRLVRNLA 193
Query: 120 ------LGERGYVVCYEMDDIE---RKLGF-GRNSLITLALLLGSDYS-QGVRGLGPESA 168
+GE V E+ ++E R L R LI LA+LLG+DY+ GV G+GP+ A
Sbjct: 194 VSSRRKVGEEYVEVPPEVIELESALRALKLKSREQLIDLAILLGTDYNPDGVPGVGPQRA 253
Query: 169 CQIVKSVG 176
+I++ G
Sbjct: 254 LKIIQEHG 261
>gi|118596598|dbj|BAF37958.1| flap endonuclease-1 [Thermoplasma sp. S02]
Length = 336
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ + K L +G+P ++ E EAQ + + +++ DG S D D LFGAR + R+ +
Sbjct: 130 IVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKNV-DGVISQDYDCLLFGARKILRNFAI 188
Query: 121 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G R Y Y +D++ ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKAL 248
Query: 170 QIVKSVGD-NVVLQRIA 185
++K GD VL+RI
Sbjct: 249 ALIKKEGDIKSVLKRIG 265
>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
gi|73919351|sp|Q6L2I9.1|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
Length = 338
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR------TV 114
++ E+K L +G+P ++ E EAQ + + L+ + S D D LFGA+ TV
Sbjct: 131 IVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDYDCLLFGAKRILRNFTV 190
Query: 115 Y--RDIWLGERGYVVCYEMDDIERKL---GFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
Y R I R V E+ D+ L G R LI + +L G+D++ GV+G+G ++A
Sbjct: 191 YGRRRIAGTSRTINVNPEIIDLNENLSNLGISREQLIYIGILTGTDFNPGVKGIGAKTAL 250
Query: 170 QIVKSVGDNVVLQRIASEGL 189
++K D + +I + G+
Sbjct: 251 SLIKKYNDIYSVIKIKNIGI 270
>gi|350416440|ref|XP_003490949.1| PREDICTED: flap endonuclease 1-like [Bombus impatiens]
Length = 381
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
KEAK L +G+P ++ EAEAQCA L + D D FG + R + E
Sbjct: 139 KEAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSE 198
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ V + D + + LG + I L ++LG DY+ ++G+GP+ A +++K+
Sbjct: 199 ARKMPVQEFHFDKVLKDLGLNHDEFIDLCIMLGCDYTSSIKGVGPKRAIELIKT 252
>gi|406860923|gb|EKD13979.1| hypothetical protein MBM_07656 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1010
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 16 NGSIPAIKLSTYRR-RLNSGSEVTQDDKNLDKMSSLRRNM-----GSEFSCMIKEAKALG 69
GS PAI+ YR RL S S + + L+RN G+ S M AK L
Sbjct: 51 GGSNPAIRTLYYRLIRLLSLSIQPLFVFDGPQRPQLKRNKRVGRGGASASDMA--AKQLL 108
Query: 70 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GERG--- 124
G PC EAEA+CALL + + D S D D +FG+ RD W G RG
Sbjct: 109 KLFGFPCHNAPGEAEAECALLQRKGIVDAVLSEDVDTLMFGSGITLRD-WSSEGARGSKA 167
Query: 125 --YVVCYEMDDI-ERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V ++ E G R +I +ALL G DY + G+ G+G + ACQ ++
Sbjct: 168 PTHVSLFDAKKTKEGSSGLDREGMILVALLSGGDYNTDGLPGIGIKVACQAARA 221
>gi|310791662|gb|EFQ27189.1| hypothetical protein GLRG_02360 [Glomerella graminicola M1.001]
Length = 376
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 74 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE----RGYVVCY 129
VP + EAEA+CALL + L D +S DSD F+FG + +D+ G+ + +
Sbjct: 122 VPWHQAPGEAEAECALLQQKGLVDAVWSEDSDSFMFGCTLLIKDLRNGKNQKLKEETQSF 181
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASE 187
+M DI + F + S+ +L G DY S G+RG G A Q+ K G RI +E
Sbjct: 182 DMKDIRKTGLFNKKSITLFGMLTGCDYDSAGLRGCGEAMARQLAKKGGLVEGFWRIQTE 240
>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
gi|28380013|sp|O50123.1|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
Length = 343
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 12/126 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 MLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G V E +D++ ++L R LI LA+L+G+DY+ GV+G+GP+
Sbjct: 190 ITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKK 249
Query: 168 ACQIVK 173
A +IV+
Sbjct: 250 ALEIVR 255
>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 12/126 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 MLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G V E +D++ ++L R LI LA+L+G+DY+ GV+G+GP+
Sbjct: 190 ITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKK 249
Query: 168 ACQIVK 173
A +IV+
Sbjct: 250 ALEIVR 255
>gi|336468979|gb|EGO57142.1| hypothetical protein NEUTE1DRAFT_123477 [Neurospora tetrasperma
FGSC 2508]
gi|350288714|gb|EGZ69939.1| hypothetical protein NEUTE2DRAFT_158527 [Neurospora tetrasperma
FGSC 2509]
Length = 1034
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 113/274 (41%), Gaps = 46/274 (16%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQ----DDKNLDKMSSLRRNM--GSEFSCMIKE 64
+L + GS PA++ YR G + D N +R+ G+
Sbjct: 46 ILAARGGSNPAVRTLFYRLVRLLGHAIQPLFVFDGPNKPAFKRNKRSYSYGNSHGVADAM 105
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK + G C + EAEA+CALL E + D S D D +FG R R+ W E
Sbjct: 106 AKRMIRLFGFMCHDAPGEAEAECALLQREGVVDAVLSEDVDTIMFGCRKTLRN-WSAEGA 164
Query: 125 -------YVVCYEMDDIERKLGFG---RNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
+V Y++D ERK G R ++ +AL+ G DY +GV G G + AC+ +
Sbjct: 165 RSSKTPTHVSVYDVD--ERKGGINGLDREGMVLVALMSGGDYLPEGVPGCGVKVACEAAR 222
Query: 174 SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET-- 231
+ + L ++RA + E W +E L +E+ N + R
Sbjct: 223 AG---------FGKELCGIRRADEAALERW-------KERLTRELRTNESGFFRTRHKAL 266
Query: 232 ------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
P +V+ Y++P + SE V R+ Q
Sbjct: 267 DIPEGFPSLEVLRYYTHPVV--SKSETVQRLKRQ 298
>gi|453086627|gb|EMF14669.1| hypothetical protein SEPMUDRAFT_63272 [Mycosphaerella populorum
SO2202]
Length = 788
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 32/209 (15%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-R 123
AK L G P EAEA+CALL E + D S D D +FG+ ++R+ W E +
Sbjct: 107 AKELLRKFGFPWHVAPGEAEAECALLQREGVVDAVLSEDVDTLMFGSGVLWRN-WTAEGK 165
Query: 124 GYVV----CYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 178
G V Y ++ K G + ++ +AL+ G DY +G+ G GP+ C ++
Sbjct: 166 GKVPTHCSVYNAKAVKEKSGLDKEGMVLVALMSGGDYIVEGIPGCGPKVGCDAARA---- 221
Query: 179 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------- 231
E + ++ S + W E L EIN N + ++ +
Sbjct: 222 ----GFGKELCALARKRDVSGLKIW-------REKLQHEINTNESKFFSRKSSKLVIPDD 270
Query: 232 -PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
P +V+ Y++P C S E V R+ A+
Sbjct: 271 FPDREVLGYYTDP-CVST-VEKVARLKAE 297
>gi|346979176|gb|EGY22628.1| hypothetical protein VDAG_04066 [Verticillium dahliae VdLs.17]
Length = 828
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GE 122
AK L G P + EAEA+CALL E L D S D D +FG +R+ W G
Sbjct: 103 AKRLIRLFGFPIHQAPGEAEAECALLQQEGLVDAVLSEDVDTIMFGCSRTFRN-WSAEGS 161
Query: 123 RG-----YVVCYEMDDIERKL---GFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
RG +V Y+ + E+ L G R+ ++ +AL+ G DY +GV G G + AC++ +
Sbjct: 162 RGGKSPTHVTVYDTN--EQSLIASGLDRHGMVLVALMSGGDYLPEGVPGCGLKLACEVAR 219
Query: 174 S 174
+
Sbjct: 220 A 220
>gi|73668744|ref|YP_304759.1| flap endonuclease-1 [Methanosarcina barkeri str. Fusaro]
gi|121723542|sp|Q46D63.1|FEN_METBF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|72395906|gb|AAZ70179.1| flap endonuclease 1 [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+++++K L +G+P ++ E EAQ A + L+ D S D D FLFGA TV R++ +
Sbjct: 131 IVEDSKYLLSIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPTVIRNLAV 190
Query: 121 -GERGYVVCYEMDDIERK----------LGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+R + D+E + LG R LI +A+ +G+D+++G+ +GP++A
Sbjct: 191 TGKRKLPGKHVYVDVELELIELEETLGVLGINREQLIDIAICVGTDFNKGLEKVGPKTAL 250
Query: 170 QIVKSVGD 177
+++K GD
Sbjct: 251 KLIKKHGD 258
>gi|358398186|gb|EHK47544.1| hypothetical protein TRIATDRAFT_263039 [Trichoderma atroviride IMI
206040]
Length = 812
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 16 NGSIPAIKLSTYRRRLNSGSEVTQ----DDKNLDKMSSLRRN-MGSEFSCMIKEAKALGL 70
G+ PAI+ YR G+ + D N K RR+ G FS AK L
Sbjct: 51 GGTNPAIRTLFYRLVRLLGTPIQPIFVFDGPNKPKFKRNRRSGRGDGFSAA--HAKRLIR 108
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-RG----Y 125
G + EAEA+CA L + D S D D +FG ++ W E +G +
Sbjct: 109 LFGFIAHDAPGEAEAECAFLQKNGVVDAVLSEDVDTIMFGCTRTMKN-WSAEGKGTRPTH 167
Query: 126 VVCYEMDDIE-RKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+ Y++D++ LG R ++ +A++ G DY +GV G GP+ AC+ K+
Sbjct: 168 ISMYDVDELNLASLGLDREGMVLVAIMSGGDYIPEGVPGCGPKVACEAAKA 218
>gi|164427499|ref|XP_956127.2| hypothetical protein NCU03564 [Neurospora crassa OR74A]
gi|157071768|gb|EAA26891.2| predicted protein [Neurospora crassa OR74A]
Length = 713
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 113/274 (41%), Gaps = 46/274 (16%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQ----DDKNLDKMSSLRRNM--GSEFSCMIKE 64
+L + GS PA++ YR G + D N +R+ G+
Sbjct: 46 ILAARGGSNPAVRTLFYRLVRLLGHAIQPLFVFDGPNKPAFKRNKRSYSYGNSHGVADAM 105
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-- 122
AK + G C + EAEA+CALL E + D S D D +FG R R+ W E
Sbjct: 106 AKRMIRLFGFMCHDAPGEAEAECALLQREGVVDAVLSEDVDTIMFGCRKTLRN-WSAEGT 164
Query: 123 -----RGYVVCYEMDDIERKLGFG---RNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
+V Y++D ERK G R ++ +AL+ G DY +GV G G + AC+ +
Sbjct: 165 RSSKTPTHVSVYDVD--ERKGGINGLDREGMVLVALMSGGDYLPEGVPGCGVKVACEAAR 222
Query: 174 SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET-- 231
+ + L ++RA + E W +E L +E+ N + R
Sbjct: 223 AG---------FGKELCGIRRADEAALERW-------KERLTRELRTNESGFFRTRHKAL 266
Query: 232 ------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
P +V+ Y++P + SE V R+ Q
Sbjct: 267 DIPEGFPSLEVLRYYTHPVV--SKSETVQRLKRQ 298
>gi|341882846|gb|EGT38781.1| hypothetical protein CAEBREN_21263 [Caenorhabditis brenneri]
Length = 809
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P +E EAEAQC L L DG S DSD++ FG + VYR ++ R E
Sbjct: 460 GIPWIEAPGEAEAQCVELERLGLVDGVVSDDSDVWAFGVKHVYRHMFSKNRKVQRYGERT 519
Query: 133 DIERK----LGFGRNSLITLALLLGSDYSQGVRGLGPESA---------CQIVKSVGDNV 179
R+ R +++ALL G DYS G+ +G A C+I K+ ++
Sbjct: 520 TANRENCKLFCLEREDYVSIALLSGGDYSSGLYKVGAIGALELVSEFVECRIDKTENLDL 579
Query: 180 VLQRI 184
V QRI
Sbjct: 580 VEQRI 584
>gi|18376035|emb|CAD21041.1| related to DNA repair endonuclease rad2 [Neurospora crassa]
Length = 1037
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 113/274 (41%), Gaps = 46/274 (16%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQ----DDKNLDKMSSLRRNM--GSEFSCMIKE 64
+L + GS PA++ YR G + D N +R+ G+
Sbjct: 46 ILAARGGSNPAVRTLFYRLVRLLGHAIQPLFVFDGPNKPAFKRNKRSYSYGNSHGVADAM 105
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-- 122
AK + G C + EAEA+CALL E + D S D D +FG R R+ W E
Sbjct: 106 AKRMIRLFGFMCHDAPGEAEAECALLQREGVVDAVLSEDVDTIMFGCRKTLRN-WSAEGT 164
Query: 123 -----RGYVVCYEMDDIERKLGFG---RNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
+V Y++D ERK G R ++ +AL+ G DY +GV G G + AC+ +
Sbjct: 165 RSSKTPTHVSVYDVD--ERKGGINGLDREGMVLVALMSGGDYLPEGVPGCGVKVACEAAR 222
Query: 174 SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET-- 231
+ + L ++RA + E W +E L +E+ N + R
Sbjct: 223 AG---------FGKELCGIRRADEAALERW-------KERLTRELRTNESGFFRTRHKAL 266
Query: 232 ------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
P +V+ Y++P + SE V R+ Q
Sbjct: 267 DIPEGFPSLEVLRYYTHPVV--SKSETVQRLKRQ 298
>gi|367008554|ref|XP_003678778.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
gi|359746435|emb|CCE89567.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
Length = 380
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 16/193 (8%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +GVP L EAEAQCA L + S D D + + R + E
Sbjct: 138 EAKQLLELMGVPYLTAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEA 197
Query: 124 GYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+E+D + LG + L ++LG DY + +RG+GP +A +++K G L
Sbjct: 198 KKEPIHEIDTETVLNGLGLTIEQFVDLGIMLGCDYCESIRGVGPVTALKLIKEHGS---L 254
Query: 182 QRIASEGLSFVKRAKNSKK----EGWSFKCNNKEESLNQEINVNGTDHSLQRETPF-SQV 236
++I + FV+ +++ K E W +K +E LN ++ ++G + +L+ P ++
Sbjct: 255 EKI----IEFVESDESNSKWKIPEDWPYK-EARELFLNPDV-IDGNEVNLKWSPPKEDEL 308
Query: 237 IDAYSNPKCYSAD 249
ID N K +S +
Sbjct: 309 IDFLCNQKKFSEE 321
>gi|327310721|ref|YP_004337618.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
gi|326947200|gb|AEA12306.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
Length = 346
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M ++AKAL ++G+P ++ E EAQ A + G S D D LFGA + R++ +
Sbjct: 135 MAEDAKALLTAMGIPWVQAPSEGEAQAAYMAARGSVWGAGSQDYDSLLFGAPRLVRNLAV 194
Query: 121 GERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPESAC 169
R V E+D + + L R L+ +A+LLG+DY+ GV G+GP+ A
Sbjct: 195 SSRRKVGEEYVEVPPEVIELDKVLKALKLKSREQLVDIAILLGTDYNPDGVPGVGPQKAL 254
Query: 170 QIVKSVG 176
+I+ G
Sbjct: 255 KIILEQG 261
>gi|218884379|ref|YP_002428761.1| flap endonuclease-1 [Desulfurococcus kamchatkensis 1221n]
gi|322812496|pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
gi|218765995|gb|ACL11394.1| Flap structure-specific endonuclease [Desulfurococcus kamchatkensis
1221n]
Length = 363
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++AK+L ++G+P ++ E EAQ A + + S D D LFG+ + R++ +
Sbjct: 145 MVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTI 204
Query: 121 GER-------GYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
R YV E+D + +LG +LI + +LLG+DY+ G G+GP+ A
Sbjct: 205 SGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKA 264
Query: 169 CQIVKSVG 176
Q+VK+ G
Sbjct: 265 LQLVKAYG 272
>gi|212224248|ref|YP_002307484.1| flap endonuclease-1 [Thermococcus onnurineus NA1]
gi|226700956|sp|B6YWX4.1|FEN_THEON RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212009205|gb|ACJ16587.1| flap structure-specific endonuclease [Thermococcus onnurineus NA1]
Length = 341
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 47 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
M + R N G +I +AK L +G+P ++ E EAQ A + + S D D
Sbjct: 122 MRATRVNEG-----LINDAKTLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDS 176
Query: 107 FLFGARTVYRDIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSD 155
LFGA + R++ + R G V E ++++ ++L R LI +A+L+G+D
Sbjct: 177 LLFGAPKLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLKELSIDREKLIEMAILVGTD 236
Query: 156 YSQ-GVRGLGPESACQIVKSVGD 177
Y+ G++G+GP+ A IVK D
Sbjct: 237 YNPGGIKGIGPKKALTIVKRTKD 259
>gi|453086897|gb|EMF14938.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 672
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 23/179 (12%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV---YRDIWLGERGY-- 125
SL VP EAEA+CA L ++ D +S DSD +FG T+ +R G++ +
Sbjct: 124 SLNVPYHRAPGEAEAECARLQQLNVVDAVWSDDSDCLMFGCTTLIMAHRSS-SGKKDWDR 182
Query: 126 VVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 184
+ Y D + + F +SL+ A+L G DY +G+RG GP++A +V+QR
Sbjct: 183 IQLYRSDILLPRFDFDTDSLVMFAVLAGGDYDDKGLRGCGPQTA---------RMVVQRK 233
Query: 185 ASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNP 243
V A+ ++ E W + L+ + +G+ S+ + P + ++ Y NP
Sbjct: 234 HGLARRLVVSAERAQLESW-------RDMLSVVLANSGSGLSIPADFPNLKALNGYRNP 285
>gi|452845529|gb|EME47462.1| hypothetical protein DOTSEDRAFT_166539 [Dothistroma septosporum
NZE10]
Length = 811
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER---GYVVC 128
L VP EAEA+CA L + D +S D D F+FG +T+ + +G + +V
Sbjct: 191 LKVPYHRAPGEAEAECARLEKAGIVDAVWSDDGDSFMFGCQTLIKQHKVGGKRISDHVRI 250
Query: 129 YEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVK 173
Y + I R+ F NS + A+L G DY + G+ G GP++A + +
Sbjct: 251 YRAETIARENDFDANSFVLFAVLAGGDYDKAGLPGCGPQTAKWVAR 296
>gi|308473689|ref|XP_003099068.1| CRE-XPG-1 protein [Caenorhabditis remanei]
gi|308267722|gb|EFP11675.1| CRE-XPG-1 protein [Caenorhabditis remanei]
Length = 828
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P +E EAEAQC L L DG S DSD++ FG + VYR ++ R E
Sbjct: 483 GIPWIEAPGEAEAQCVELERLGLVDGVVSDDSDVWAFGVKHVYRHMFAKNRRVQRYGEKT 542
Query: 133 DIERK----LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
R+ R I++ALL G DYS G+ +G A ++V
Sbjct: 543 AANRENCRLFCLQREDFISIALLSGGDYSSGLVKVGAIGALELV 586
>gi|390938891|ref|YP_006402629.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
gi|390191998|gb|AFL67054.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
Length = 363
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++AK+L ++G+P ++ E EAQ A + + S D D LFG+ + R++ +
Sbjct: 145 MVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTI 204
Query: 121 GER-------GYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
R YV E+D + +LG +LI + +LLG+DY+ G G+GP+ A
Sbjct: 205 SGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKA 264
Query: 169 CQIVKSVG 176
Q+VK+ G
Sbjct: 265 LQLVKAYG 272
>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
gi|259645975|sp|C6A1U9.1|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
Length = 340
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++
Sbjct: 130 ILIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G V E ++D+ ++L R LI LA+L+G+DY+ G++GLGP+
Sbjct: 190 ITGKRKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKK 249
Query: 168 ACQIVKSVGD 177
A +IVK D
Sbjct: 250 ALEIVKYSKD 259
>gi|348500556|ref|XP_003437839.1| PREDICTED: probable flap endonuclease 1 homolog [Oreochromis
niloticus]
Length = 348
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%)
Query: 53 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 112
N S KE L LGVP ++ +AEA CA L E S D D FGA
Sbjct: 98 NWTGTASSQTKECLQLLKCLGVPVIQAPGDAEALCAQLVREGTVHAVASEDMDTLPFGAN 157
Query: 113 TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ R + + V+ Y + + KL G + L +LLG DY + + GLGP+ A ++
Sbjct: 158 ILIRQLNAKKDSEVIEYSLPKLLEKLQIGHKEFVDLCILLGCDYCEKIPGLGPKRALTLI 217
Query: 173 K 173
+
Sbjct: 218 Q 218
>gi|410670767|ref|YP_006923138.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409169895|gb|AFV23770.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 338
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ ++++++ L ++G+P L+ E EAQ A + ++ D S D D LFGA V R++
Sbjct: 129 ATIVEDSRKLLNAMGIPFLDAPSEGEAQAAYMVIKRDADYAGSQDYDSLLFGAPRVVRNL 188
Query: 119 WL-GERG------YV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
+ G+R YV E+++ L R LI +AL +G+DY+QG+ +GP+
Sbjct: 189 TVSGKRKLPKKNLYVDVKPEVMELEETLLGLDVTREQLIDIALCVGTDYNQGITNIGPKK 248
Query: 168 ACQIVKSVG 176
A ++VK G
Sbjct: 249 ALKLVKEHG 257
>gi|11497880|ref|NP_069102.1| flap endonuclease-1 [Archaeoglobus fulgidus DSM 4304]
gi|28380012|sp|O29975.1|FEN_ARCFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|42543625|pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543626|pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543629|pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|2650376|gb|AAB90967.1| DNA repair protein RAD2 (rad2) [Archaeoglobus fulgidus DSM 4304]
Length = 336
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ AK L +G+P ++ E EAQ A + + + S D D LFG+ + R++ +
Sbjct: 130 IVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAI 189
Query: 121 -------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV V E+ +E ++LG R LI +A+L+G+DY++GV+G+G + A
Sbjct: 190 TGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKAL 249
Query: 170 QIVKSVGD 177
+K+ GD
Sbjct: 250 NYIKTYGD 257
>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|317374930|sp|Q75DS8.2|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|374106098|gb|AEY95008.1| FABL052Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 15/200 (7%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL----RRNMGSEFSCMIKEAKALGL 70
+G P +K +R E Q L + + + RR + E + + K LGL
Sbjct: 86 FDGKPPVLKAHELDKRTERRKETEQKLAELTEQAEIMKHERRLVKVEQWHVAEAKKLLGL 145
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
+G+P ++ EAEAQCA L + S D D + + R + E +E
Sbjct: 146 -MGIPYVDAPGEAEAQCAELAKKGKVFAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHE 204
Query: 131 MDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG--DNVVLQRIAS 186
+D + + LG + L+ L ++LG DY + ++G+GP +A +++K G +N+V + I+S
Sbjct: 205 IDTELVLQGLGLSQEQLVDLGIMLGCDYCESIKGVGPVTALKLIKEHGSLENIV-EFISS 263
Query: 187 EGLSFVKRAKNSKKEGWSFK 206
G AK E W +K
Sbjct: 264 GG-----NAKWKVPENWPYK 278
>gi|340516246|gb|EGR46495.1| predicted protein [Trichoderma reesei QM6a]
Length = 791
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
R G F+ AK L G + EAEA+CALL + D S D D +FG
Sbjct: 86 RSGRGDGFAAA--HAKRLIRLFGFVVHDAPGEAEAECALLQRNGIVDAVLSEDVDTIMFG 143
Query: 111 ARTVYRDIWL--GERGYVVCYEMDDIER----KLGFGRNSLITLALLLGSDY-SQGVRGL 163
R+ W G+ G M D+E LG R ++ +AL+ G DY +GV G
Sbjct: 144 CTRTLRN-WSAEGKAGKPTHVSMYDVEEMNMANLGLDREGMVLVALMSGGDYIPEGVPGC 202
Query: 164 GPESACQIVKS-VGDNVVLQRIA-SEGL 189
GP+ AC+ K+ G ++ R++ +EGL
Sbjct: 203 GPKVACEAAKAGFGKSLCRLRVSDAEGL 230
>gi|336275216|ref|XP_003352361.1| hypothetical protein SMAC_07802 [Sordaria macrospora k-hell]
gi|380088465|emb|CCC13620.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 903
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 48/276 (17%)
Query: 11 LLRSLNGSIPAIKLSTYRRRLNSGSEVTQ----DDKNLDKMSSLRRNM--GSEFSCMIKE 64
+L + GS PA++ YR G + D N +R+ G+
Sbjct: 46 ILAARGGSNPAVRTLFYRLVRLLGHTIQPLFVFDGPNKPAFKRNKRSYSYGNSHGVADAM 105
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-- 122
AK + G C + EAEA+CALL E + D S D D +FG R R+ W E
Sbjct: 106 AKRMIRLFGFQCHDAPGEAEAECALLQREGVVDAVLSEDVDTIMFGCRRTLRN-WSAEGT 164
Query: 123 -----RGYVVCYEMDDIERKLGFG-----RNSLITLALLLGSDY-SQGVRGLGPESACQI 171
+V Y++D ER+ G G R ++ +AL+ G DY +GV G G + AC+
Sbjct: 165 RSSKTPTHVSVYDVD--EREGGGGINGLDREGMVLVALMSGGDYLPEGVPGCGVKVACEA 222
Query: 172 VKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET 231
++ + L ++RA + E W +E L++E+ N + R
Sbjct: 223 ARAG---------FGKELCGIRRADTAALERW-------KERLSRELRTNESGFFRTRHK 266
Query: 232 --------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
P +V+ Y++P A E V R+ Q
Sbjct: 267 ALEIPEGFPSLEVLRYYTHPVVSKA--ETVQRLRRQ 300
>gi|336364544|gb|EGN92901.1| hypothetical protein SERLA73DRAFT_190513 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388587|gb|EGO29731.1| hypothetical protein SERLADRAFT_457914 [Serpula lacrymans var.
lacrymans S7.9]
Length = 629
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 63 KEAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+E + + ++G+PC+E G EAEA + L + D S D+D+ ++ A + R+I
Sbjct: 428 QECREIIRAMGIPCIESTGPFEAEALASSLVINGFADYVASEDTDVLVYEAPLI-RNI-A 485
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
G ++ D+ L R+S I ALLLG+D+SQ ++ +GP+ A + ++ G
Sbjct: 486 NREGPLIVVSGSDVRSVLQLERSSYIDFALLLGTDFSQRIKNVGPQRALKFIREYGS--- 542
Query: 181 LQRIASEGLSFVKR 194
++R+ + + + R
Sbjct: 543 IERVLEQEIKYPPR 556
>gi|407922590|gb|EKG15687.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 691
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 108/266 (40%), Gaps = 41/266 (15%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER- 123
AK L G P EAEA+CALL E + D S D D +FG+R R+ W E+
Sbjct: 104 AKQLLKQFGFPFHIAPGEAEAECALLQREGIVDVVLSEDVDTLMFGSRITLRN-WSPEQK 162
Query: 124 -----GYVVCYEMDDIERKL-GFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 176
+V Y+ + G R +I +AL+ G DY +G+ G GP++AC+ ++
Sbjct: 163 SSKVPTHVNVYDAGKTKSGPSGLDREGMILVALMSGGDYLPEGIPGCGPKTACEAARAG- 221
Query: 177 DNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH--------SLQ 228
L +K+ + + W E L +E+ N + S+
Sbjct: 222 --------FGHRLCAIKKKDTAALQAW-------REDLARELRTNESKFFKRKHGTLSVP 266
Query: 229 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHL-----FQHARLHQVCAQFFQWPPEKTD 283
+ P + ++ Y +P S EA+ R L ++L A L A F+W
Sbjct: 267 EDFPRADILGYYVSPAISS--PEALER-LKRNLRWDQDLNFAGLRTFTADAFEWVKVTGA 323
Query: 284 EYILPKIAERDLRRFANLRANTLALG 309
+ + +A L R +R A G
Sbjct: 324 KKFIRNLAPALLVRHLRMRGQAAAEG 349
>gi|167378108|ref|XP_001734673.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165903695|gb|EDR29139.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 755
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+ +P + EAEAQC L + LCD ++DSDIF++GA+ V ++++ +
Sbjct: 572 INIPYIIAPGEAEAQCYQLEHDGLCDYIATNDSDIFVYGAKNVIKNLFTSSHPLLYSSST 631
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
D + + + +LL+ SDYS G+ +GP SA +I+ S
Sbjct: 632 FD------YSLDQIRLYSLLVPSDYSNGIPNIGPISAKKIINS 668
>gi|432328461|ref|YP_007246605.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135170|gb|AGB04439.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 339
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+ EAK L +GVP ++ E EAQ A + S D D LFG + R++ +
Sbjct: 131 MVDEAKKLLDHMGVPWVQAPSEGEAQAAFMAQRGDAYASASQDFDSLLFGTPRLVRNMAI 190
Query: 121 G-------ERGYV-VCYEM---DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
+R YV V EM ++ + L R L+ + +L+G+D++ G++G+GP++A
Sbjct: 191 TGKRKLPRKRVYVEVKPEMLVLNETLKNLEITREQLVDIGILVGTDFNPGIKGIGPKTAL 250
Query: 170 QIVKSVGDNVVLQRIASE 187
+++K G L+R+ E
Sbjct: 251 KLIKKFGS---LERVMDE 265
>gi|359417810|ref|ZP_09209878.1| flap endonuclease-1, partial [Candidatus Haloredivivus sp. G17]
gi|358031834|gb|EHK00670.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 296
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI+E+K L ++G+P ++ E EAQ A ++ E S D D LFGA + R++
Sbjct: 88 MIEESKELLDAMGIPYIQASSEGEAQAAFMSSEGDVYAVGSQDWDCMLFGADRMVRNLTS 147
Query: 121 --------GERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
G+R V E++ + +L R L+ L +++G+D++ G+ G+GP+ +
Sbjct: 148 RKTRKTSSGKRKEVKQQRIELEKVLEELDLSREQLVMLGMVMGTDFNDGIHGIGPKKGLE 207
Query: 171 IVK 173
+VK
Sbjct: 208 MVK 210
>gi|20092799|ref|NP_618874.1| flap endonuclease-1 [Methanosarcina acetivorans C2A]
gi|28380016|sp|Q8TIY5.1|FEN_METAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19918097|gb|AAM07354.1| FlaP endonuclease-1 [Methanosarcina acetivorans C2A]
Length = 338
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 14/148 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+++++K L +G+P ++ E EAQ A + L+ D S D D FLFGA V R++ +
Sbjct: 131 IVEDSKYLLGIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPKVVRNMAV 190
Query: 121 -------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV E+++ R L R+ LI +A+ +G+DY++G+ +GP++A
Sbjct: 191 TGKRKLPGKNVYVDVELEVIELEETLRALEINRDQLIDIAICVGTDYNKGLEKVGPKTAL 250
Query: 170 QIVKSVGD-NVVLQR--IASEGLSFVKR 194
+++K GD + VL+ + EGL +++
Sbjct: 251 KLIKKHGDIHAVLREKDMEIEGLDRIRK 278
>gi|67937671|gb|AAY83298.1| unknown [Babesia sp. WA1]
Length = 954
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQC LN S DSD FGAR + ++ + R + + Y
Sbjct: 654 FGIPYMHAPSEAEAQCCFLNQSGEVYAVISDDSDTLPFGARRILKN-FFNSRVFEI-YLS 711
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
I+ +LG + L LA++ G DY+ GV G+G +A +++K+
Sbjct: 712 SRIKSELGLSQEQLALLAIICGCDYTDGVCGIGIVNALEVIKA 754
>gi|357601961|gb|EHJ63212.1| flap endonuclease-1 [Danaus plexippus]
Length = 266
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
EA+ L +G+P +E EAEAQCA L + D D FGA + R + E
Sbjct: 28 EARQLLKLMGIPVVEAPCEAEAQCAELVKGGKVYAVATEDMDALTFGANVLLRHLTFSEA 87
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+ V + +D + R L + I L +LLG DY ++G+GP+ A +++K
Sbjct: 88 RKMPVQEFHLDQVLRGLELEQTEFIDLCILLGCDYCGSIKGIGPKRAIELIKQ------- 140
Query: 182 QRIASEGLSFVKRAKNSKKEGWSF 205
R + L + K S E W +
Sbjct: 141 HRSIEQVLHNIDTKKYSPPENWEY 164
>gi|388583596|gb|EIM23897.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 433
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K + + R + T+ D + +D++S + E + E
Sbjct: 86 FDGKPPDLKSNVLKSRFEKREDATEQGEEAKETGDAETIDRLSRRTVRVTKEHNM---EC 142
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
+ L +G+P +E EAEAQCA L S D D FGA + R + E+
Sbjct: 143 RKLLRLMGIPVVEAPSEAEAQCAELVRGGKVWAAGSEDMDTLTFGAPILLRHLTFSEQKK 202
Query: 126 --VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG--DNVV 180
+ Y +++ L GR L +LLG DY + V+G+GP +A ++++ G D +V
Sbjct: 203 EPISHYYLEEALTGLEMGREQFTDLCILLGCDYLEPVKGVGPSTALKLIREYGSLDEIV 261
>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
gi|317374878|sp|A8QCH0.1|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
Length = 378
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S +R +E + D+ +++K + E S +EA
Sbjct: 85 FDGKPPQMKTSELEKRTERRTEAEKQRNDAVELGDETSVNKFEKRLVKVTKEQS---EEA 141
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K L +G+P L+ EAEAQCA L S D D FG+ + R + E
Sbjct: 142 KRLVTLMGIPVLDAPCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASEAKK 201
Query: 126 VVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ EM + + + G + L +LLG DY +RG+GP+ A +++K
Sbjct: 202 LPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRGIGPKKAFELIK 251
>gi|157819261|ref|NP_001100380.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Rattus norvegicus]
gi|149046241|gb|EDL99134.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (mapped) [Rattus norvegicus]
Length = 862
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 22 IKLSTYRRRLNSGSEVTQD---DKNLDKMSSLRRNMGSEFSC------------------ 60
IK R+ + G+E + D D NL+++ +L N+ +E +
Sbjct: 705 IKAMKEHRKEDRGAEDSPDEWQDVNLEELDALESNLLAEQNSLEAQKQQQDRIAASVTGQ 764
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 765 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 823
Query: 121 GERGYVVCYEMDDIERKLGFGRNSL 145
+ +V Y+ D +L G L
Sbjct: 824 NKNKFVEYYQYVDFYNQLESGGTKL 848
>gi|16082069|ref|NP_394495.1| flap endonuclease-1 [Thermoplasma acidophilum DSM 1728]
gi|28380022|sp|Q9HJD4.1|FEN_THEAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|10640350|emb|CAC12164.1| DNA repair protein RAD2 related protein [Thermoplasma acidophilum]
Length = 336
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ + K L +G+P ++ E EAQ + + +++ DG S D D LFGAR + R+ +
Sbjct: 130 IVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKNV-DGVISQDYDCLLFGARKILRNFAI 188
Query: 121 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G R Y Y +D++ ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKAL 248
Query: 170 QIVKSVGD-NVVLQRIA 185
++K GD VL+ I
Sbjct: 249 ALIKKEGDIKSVLKHIG 265
>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
Length = 345
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 21/203 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S +R+ +E + D+ +++K + + E + +EA
Sbjct: 85 FDGKPPQMKTSELEKRIERRAEAEKQRSDAVELGDEASVNKFARRLVKVTKEQN---EEA 141
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K L +G+P L+ EAEAQCA L S D D FG+ + R + E
Sbjct: 142 KRLVTLMGIPVLDAPCEAEAQCAALARAGKVFATVSEDMDALTFGSPILLRQMIASEAKK 201
Query: 126 VVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+ EM + + + G I L +LLG DY +RG+GP+ A +++K
Sbjct: 202 LPVKEMNLNQVLKDFGMNMEQFIDLCILLGCDYVSTIRGIGPKKAFELIKK-------HE 254
Query: 184 IASEGLSFVKRAKNSKKEGWSFK 206
L + + K + + W +K
Sbjct: 255 CIENVLKIIDQTKYAIPKNWQYK 277
>gi|385805407|ref|YP_005841805.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
gi|383795270|gb|AFH42353.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
Length = 350
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 16/128 (12%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR---- 116
M+KEA L ++G+P ++ E EAQ A + + S D D LFG+ V R
Sbjct: 137 MVKEAIKLLDAMGLPTVQAPAEGEAQAAYMAKKGDVWSSGSQDYDSILFGSPRVVRNLTV 196
Query: 117 ---------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
D+++ + V+ E + I KLG R LI + ++LG+DY+ G++G+G +
Sbjct: 197 SGKRKLPKKDVYIDIKPEVI--ESNVIYEKLGINREKLIIIGIMLGTDYNPDGIKGVGIK 254
Query: 167 SACQIVKS 174
+A +IVKS
Sbjct: 255 TALKIVKS 262
>gi|389595061|ref|XP_003722753.1| putative DNA repair protein RAD2 [Leishmania major strain Friedlin]
gi|323363981|emb|CBZ12987.1| putative DNA repair protein RAD2 [Leishmania major strain Friedlin]
Length = 931
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
GVP + EA+AQCA L L D F+ DSD+ + GA V R + + VV YE
Sbjct: 651 GVPYVLSPAEADAQCAFLARCGLVDAVFTEDSDVLVHGATRVLRG-FFAQSKNVVAYEQT 709
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
+ G + L+ LA LLG DY++GV G+G
Sbjct: 710 HLS-ACGITKTVLVALASLLGCDYTEGVCGIG 740
>gi|302676249|ref|XP_003027808.1| hypothetical protein SCHCODRAFT_60951 [Schizophyllum commune H4-8]
gi|300101495|gb|EFI92905.1| hypothetical protein SCHCODRAFT_60951 [Schizophyllum commune H4-8]
Length = 548
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 27 YRRRLNSGSEVTQDDKNLDKM--------SSLRRNMGSEFSCMIKEAKALGLSLGVPCLE 78
Y R +SGS + +D + +S R +E+K + +LGVPC++
Sbjct: 303 YSTRGSSGSAKAKSKYAIDTLMQKSALMHASFDRRAHPPTEATYRESKEILAALGVPCVD 362
Query: 79 --GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIER 136
G EAEA + + L L D S D+D+ ++GA + R+ L R + +
Sbjct: 363 ATGAFEAEALASAMVLGGLADYVVSEDTDVLVYGA-PLLRN--LSNRQGPLVLLPASLWD 419
Query: 137 KLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKR 194
L R + ALLLG+D+SQ ++ +GP A + +++ G ++RI E + R
Sbjct: 420 LLHLSRKEYVDFALLLGTDFSQRIKNVGPARALKFIRTHGS---IERIVDEETKYPPR 474
>gi|389852752|ref|YP_006354986.1| flap endonuclease-1 [Pyrococcus sp. ST04]
gi|388250058|gb|AFK22911.1| flap endonuclease-1 [Pyrococcus sp. ST04]
Length = 341
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 MLIEDAKKLLELMGIPVIQAPSEGEAQAAYMASKGKVYASASQDYDSLLFGAPRLVRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G + E +D++ L R LI LA+L+G+DY+ G++G+GP+
Sbjct: 190 ITGKRKLPGKNIYVEIKPELIVLDEVLSSLKLTREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 168 ACQIVKSVGD 177
A +IV+ D
Sbjct: 250 ALEIVRHSKD 259
>gi|308499054|ref|XP_003111713.1| hypothetical protein CRE_03137 [Caenorhabditis remanei]
gi|308239622|gb|EFO83574.1| hypothetical protein CRE_03137 [Caenorhabditis remanei]
Length = 447
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 28/187 (14%)
Query: 51 RRNMG-SEFSCM---IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
RR+ G S F+ + + + +L GV + + EAQCA L + GC ++D D
Sbjct: 98 RRSFGDSPFTNLADHVIKTNSLLSHFGVKVIIAPGDGEAQCARLEELGVVSGCITTDFDY 157
Query: 107 FLFGARTVYR------DIWLGERGYVVCY---EMDDIERKLGFGRNSLITLALLLGSDYS 157
FLFG + +YR + G R + V + +IE+K+ R LI A+LLG DY
Sbjct: 158 FLFGGKNLYRFDFSATTMLSGARLHDVTHLSLGRMNIEKKV--ARPHLIATAILLGCDYY 215
Query: 158 Q-GVRGLGPESACQIVKSVGDN--------VVLQRIASEGLSFVKRAKNSKKEGWSFKCN 208
Q GV+ +G + I+ GDN V+L R + S+V+R ++ E S K
Sbjct: 216 QRGVQNIGIITVFDILAEFGDNGCKETDPQVILDRFS----SYVRREIPARSEDSSRKLR 271
Query: 209 NKEESLN 215
+ + N
Sbjct: 272 LRGKKFN 278
>gi|332021297|gb|EGI61676.1| Flap endonuclease 1-B [Acromyrmex echinatior]
Length = 381
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 36 EVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 95
+ ++D N++ + R + EAK L +G+P ++ EAEAQCA L
Sbjct: 112 QAAEEDGNVEAIDKFNRRLVKVTKTHADEAKELLQLMGIPYVDAPCEAEAQCAALVKAGK 171
Query: 96 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLG 153
+ D D FG + R + E + E+ D + L N I L ++LG
Sbjct: 172 VFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLAGLELNHNEFIDLCIMLG 231
Query: 154 SDYSQGVRGLGPESACQIVKS 174
DY+ ++G+GP+ A +++K+
Sbjct: 232 CDYTNSIKGVGPKRAIELIKN 252
>gi|365984110|ref|XP_003668888.1| hypothetical protein NDAI_0B06130 [Naumovozyma dairenensis CBS 421]
gi|343767655|emb|CCD23645.1| hypothetical protein NDAI_0B06130 [Naumovozyma dairenensis CBS 421]
Length = 774
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 22/133 (16%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR---- 116
+K K L + + ++ E EAQCA L + D +++DSDIF+FG V +
Sbjct: 161 FMKNVKQLLKFMNISYIDACGEGEAQCAWLQVHGYVDFVWTNDSDIFIFGGTKVIKNYSK 220
Query: 117 ---DIWL-------------GERGYVVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQ 158
DI + + ++ +++++ RK N SL+ ++LLG+DY++
Sbjct: 221 FVNDIGMTASPKKVSSPLRKAKEYFITVIDLNEVIRKTNGKINQWSLLFFSVLLGADYNK 280
Query: 159 GVRGLGPESACQI 171
GV+GLG A Q+
Sbjct: 281 GVKGLGKTKALQL 293
>gi|410924704|ref|XP_003975821.1| PREDICTED: probable flap endonuclease 1 homolog [Takifugu rubripes]
Length = 297
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+GVP ++ +AEA CA L E D S D D FGA + R + + G V+ Y +
Sbjct: 117 IGVPVIQAPGDAEALCAWLVKEGTVDAVASEDMDTLPFGASILIRQLNSKKDGEVIEYSL 176
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS--VGDNVVLQ 182
+ +L + L +LLG DY + + GLGP+ A +++ +NV+L
Sbjct: 177 SKLLERLQINHQEFVDLCILLGCDYCEKICGLGPKRALTLIQKHRTIENVILH 229
>gi|301609960|ref|XP_002934532.1| PREDICTED: flap endonuclease GEN homolog 1-like [Xenopus (Silurana)
tropicalis]
Length = 256
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D+FL+GA+TVY
Sbjct: 108 SYFKSVLKECLLMLECLGIPWVQAAGEAEAMCAYLNAHGYVDGCITNDGDVFLYGAQTVY 167
Query: 116 RDI 118
R+
Sbjct: 168 RNF 170
>gi|302418945|ref|XP_003007303.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261352954|gb|EEY15382.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 833
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-- 122
AK L G P + EAEA+CALL E L D S D D +FG +R+ W E
Sbjct: 103 AKRLIRLFGFPIHQAPGEAEAECALLQQEGLVDAVLSEDVDTIMFGCSRTFRN-WSAEGL 161
Query: 123 RG-----YVVCYEMDDIERKL---GFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
RG +V Y+ + E+ L G R ++ +AL+ G DY +GV G G + AC++ +
Sbjct: 162 RGGKSPTHVTVYDTN--EQSLVASGLDRQGMVLVALMSGGDYLPEGVPGCGLKLACEVAR 219
Query: 174 S 174
+
Sbjct: 220 A 220
>gi|124485183|ref|YP_001029799.1| flap endonuclease-1 [Methanocorpusculum labreanum Z]
gi|166973701|sp|A2SQC6.1|FEN_METLZ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|124362724|gb|ABN06532.1| flap endonuclease 1 [Methanocorpusculum labreanum Z]
Length = 333
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 28/196 (14%)
Query: 6 HYSSALLRSLN-------------GSIPAIKLSTYRRRL----NSGSEVTQDDKNLDKMS 48
H S L R+ N G P K ST +R N+ + K D+ S
Sbjct: 58 HLSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENAADAWEKALKEGDEES 117
Query: 49 SLRRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
+ + M S + +I +K L +LG+ ++ EE EAQ + + S D D
Sbjct: 118 ARKYAMASSKIDAFIIDSSKELLSALGIAWIQAPEEGEAQSSFMTKNGDVTYAVSQDYDS 177
Query: 107 FLFGARTVYRDIWLGE----RGYVVCY-----EMDDIERKLGFGRNSLITLALLLGSDYS 157
LFGA + R+I + RG V+ ++++ L + LI +ALL+G+DY+
Sbjct: 178 LLFGAPDLVRNITVSGKKRIRGKVLSVYPERLRLEEVLTGLSVTQEELIQIALLIGTDYN 237
Query: 158 QGVRGLGPESACQIVK 173
GV G+GP++A +IV+
Sbjct: 238 SGVPGVGPKTAVKIVR 253
>gi|440632113|gb|ELR02032.1| hypothetical protein GMDG_05194 [Geomyces destructans 20631-21]
Length = 842
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 15/173 (8%)
Query: 16 NGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALG 69
G PA++ YR +G+ V D+ L K + RR GS + ++ K L
Sbjct: 51 GGPNPALRTLFYRLVRLAGTSVQAIFVFDGPDRPLLKRNKTRRKGGSAYLADVRRTKLLL 110
Query: 70 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG----- 124
G + EAEA+CALL L D S D D +FG+ RD W E
Sbjct: 111 QLFGFESHDAPGEAEAECALLQQRGLVDAVLSEDVDTLMFGSGITIRD-WSCEGSGKTPP 169
Query: 125 -YVVCYEMDDI-ERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y+ E K G R +I +AL+ G DY + GV G + AC+ ++
Sbjct: 170 THVSLYDAKVTKEGKSGLDREGMILVALMSGGDYDTAGVARCGAKIACEAARA 222
>gi|345005776|ref|YP_004808629.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
gi|344321402|gb|AEN06256.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
Length = 326
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQCA + D S D D FGA R L +G+ ++
Sbjct: 144 LDVPYIEAPAEGEAQCAHMAATGEVDYAGSEDYDTMTFGAPRTLRQ--LTSKGHPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
K L+ +ALL+G+D+++GV G GP++A + VK GD
Sbjct: 202 QKTLEKHDISYEQLVDVALLMGTDFNEGVTGYGPKTAVKAVKEHGD 247
>gi|307173481|gb|EFN64391.1| Flap endonuclease 1-B [Camponotus floridanus]
Length = 382
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 36 EVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 95
+ ++D N++ + R + EAK L +G+P ++ EAEAQCA L
Sbjct: 112 QAAEEDGNVEAIDKFSRRLVKVTKNHADEAKQLLQLMGIPYIDAPCEAEAQCAALVKAGK 171
Query: 96 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLG 153
+ D D FG + R + L E + E MD + L + I L ++LG
Sbjct: 172 VFATATEDMDALTFGCDILLRRLTLSEARKLPVQEIHMDKVLTGLELNHDEFIDLCIMLG 231
Query: 154 SDYSQGVRGLGPESACQIVKS 174
DY+ ++G+GP+ A +++K+
Sbjct: 232 CDYTGSIKGVGPKRAIELIKN 252
>gi|428169402|gb|EKX38336.1| flap endonuclease 1 [Guillardia theta CCMP2712]
Length = 435
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Query: 12 LRSLNGSIPAIK---LSTYRRRLNSGSEVTQD---DKNLDKMSSLRRNMGSEFSCMIKEA 65
L +G P++K +++ R + G++ Q+ + N+++M+ + +E
Sbjct: 114 LYVFDGKPPSLKSGEIASRNLRRDEGAKRLQEATEEGNVEEMNKFAKRTTRVTKQHAEEC 173
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L LGVP ++ EAEAQCA L L + D D G+ + R + + E +
Sbjct: 174 KRLLRLLGVPTVDAPSEAEAQCAALAKNGLVYASATEDMDALCCGSPILVRRLTMSEARK 233
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
V+ Y +D + LG + +L G D+S+ ++G+GP+SA ++ G+
Sbjct: 234 LPVLEYHLDQVLSSLGLNMTQFVDFCILCGCDFSETIKGIGPKSALHGIRKHGN 287
>gi|383859686|ref|XP_003705323.1| PREDICTED: flap endonuclease 1-like [Megachile rotundata]
Length = 383
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 36 EVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 95
+ ++ N + + R + EAK L +G+P +E EAEAQCA L
Sbjct: 112 QAAEEAGNAEDIEKFNRRLVKVTQVHADEAKQLLKLMGIPYVEAPCEAEAQCAALVKAGK 171
Query: 96 CDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLG 153
+ D D FG + R + E + V + D + LG ++ I L ++LG
Sbjct: 172 VFATATEDMDALTFGCNVLLRRLTFSEARKMPVQEFHHDKVLEGLGLNQDEFIDLCIMLG 231
Query: 154 SDYSQGVRGLGPESACQIVKS 174
DY+ ++G+GP+ A +++K+
Sbjct: 232 CDYTNSIKGVGPKRAMELIKT 252
>gi|255717633|ref|XP_002555097.1| KLTH0G01298p [Lachancea thermotolerans]
gi|238936481|emb|CAR24660.1| KLTH0G01298p [Lachancea thermotolerans CBS 6340]
Length = 675
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI---W-- 119
K L ++ + +E E EA+CA L E L D S+DSD +FGA V R+ W
Sbjct: 155 VKRLLKTMNISFIETCGEGEAECARLQREGLVDYVLSNDSDTLVFGATRVLRNFSRFWED 214
Query: 120 --------LGERGYVVCY-EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
L ++ + + + D+++ + R+SL+ LLG+DY+QG+RGLG + A +
Sbjct: 215 VPATYTGPLKKKDHKEMFITVVDMQQIRNWNRSSLVLYCTLLGADYNQGIRGLGSKKAAK 274
Query: 171 IVKSVGDNVV 180
+ + N
Sbjct: 275 LAQLTTPNFA 284
>gi|255513611|gb|EET89877.1| XPG I domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 352
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ AK L +G+ + E EAQ + + + + S D D LFG++ V R++ L
Sbjct: 134 IVSSAKELLGYMGIWYINAPSEGEAQASYMCSKGIAYAAASQDYDTLLFGSKKVVRNLTL 193
Query: 121 -------GERGYV-VCYEMDDIERKLG---FGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ +V V EM D++ LG R LI + +LLG+D++ GV+G+GP++A
Sbjct: 194 SGRRKLPGKNVFVNVNPEMVDLDATLGSLGITRQKLIWIGILLGTDFNDGVKGVGPKTAL 253
Query: 170 QIVKS 174
+ VKS
Sbjct: 254 KAVKS 258
>gi|346327520|gb|EGX97116.1| flap structure-specific endonuclease [Cordyceps militaris CM01]
Length = 770
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 91/237 (38%), Gaps = 47/237 (19%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
+AK L G+P L+ EAEA+CALL + D S D D +FG R+ W E
Sbjct: 102 QAKRLIRLFGLPALDAPGEAEAECALLQRHGIVDAVLSEDVDTIMFGCTKTLRN-WSSEG 160
Query: 123 -----RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 176
+V Y+ + G GR ++ +AL+ G DY G+ G G + AC+
Sbjct: 161 KTSTAPTHVSLYDTAAVANH-GLGRQGMVLVALMSGGDYLPDGIPGCGVKVACEAAN--- 216
Query: 177 DNVVLQRIASEGLSF--VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH--------S 226
A G S +K A W L E+ N + H
Sbjct: 217 --------AGFGTSLCSLKAADTDMISAW-------RAELRHELTTNESGHFRTKHKSLH 261
Query: 227 LQRETPFSQVIDAYSNPKCYSADSEAVH-RVLAQHLFQHAR-----LHQVCAQFFQW 277
+ + P +V+ Y++P S H + Q ++QH L + + F W
Sbjct: 262 IPDDFPNMEVLRYYTHPVV----SPQSHLEAIRQKVYQHKNVDLESLREFARETFDW 314
>gi|452985668|gb|EME85424.1| hypothetical protein MYCFIDRAFT_206519 [Pseudocercospora fijiensis
CIRAD86]
Length = 967
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV---YRDIWLGERGYVVC 128
L VP EAEA+CA L + D +S D D F+FG T+ +R G G V
Sbjct: 123 LHVPYHRAPGEAEAECAKLQRLGVVDAVWSDDCDSFMFGCTTLIKQHRKPGNGCLGQVSI 182
Query: 129 YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
YE I L +SL+ A+L G DY+ G+RG GP SA +I ++
Sbjct: 183 YEASTILPNLDLDADSLVLFAVLAGGDYNLTGLRGCGPMSAKRIAQT 229
>gi|221052642|ref|XP_002261044.1| flap exonuclease [Plasmodium knowlesi strain H]
gi|317376188|sp|B3L014.1|FEN1_PLAKH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194247048|emb|CAQ38232.1| flap exonuclease, putative [Plasmodium knowlesi strain H]
Length = 595
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-- 121
EAK L +G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAS 201
Query: 122 -----------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
+RGY++ ++ + + L N I +L G DY ++G+G ++A
Sbjct: 202 STSQNKNKNSSKRGYILTEINLEQVLKGLNLNMNEFIDFCILCGCDYCDTIKGIGSKTAY 261
Query: 170 QIVK 173
++K
Sbjct: 262 NLIK 265
>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 397
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+GVP +E EAEAQCA + L G + D D FGA V R + V E+
Sbjct: 149 MGVPVVEAPSEAEAQCAEMAKAGLVYGLATEDMDALTFGAPRVIRHLMAPSSSNVPVQEI 208
Query: 132 DDIE--RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
D ++LG + I + +L+G DY +RG+G A Q++K G
Sbjct: 209 DRAVALQELGLDDDQFIDMCILMGCDYCGTIRGIGAVRALQLIKKHG 255
>gi|341039026|gb|EGS24018.1| nuclease-like protein [Chaetomium thermophilum var. thermophilum
DSM 1495]
Length = 922
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 76/171 (44%), Gaps = 14/171 (8%)
Query: 16 NGSIPAIKLSTYR--RRLNSGSE--VTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLS 71
GS PAI+ YR R L+ G D N RR+ G+ AK L
Sbjct: 51 GGSNPAIRTLFYRFVRLLSLGIHPIFVFDGPNKPIFKRNRRS-GTGNGVSTAMAKRLIRL 109
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GERG----Y 125
G + EAEA+CA L + + D S D D +FG+R RD W G +G +
Sbjct: 110 FGFTAHDAPGEAEAECAYLEQQGIVDAVLSEDVDTIMFGSRVTLRD-WSSEGSKGGPPTH 168
Query: 126 VVCYEMDDI-ERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
V ++ I E G R ++ +AL+ G DY G+ G G + ACQ K+
Sbjct: 169 VTLHDAKKIAEGPSGLDREGMVLVALMSGGDYLPDGIPGCGIKVACQAAKA 219
>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
Length = 328
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALL--NLESLCDGCFSSDSDIFLFGARTVYRDI 118
+I+ +K L LGVP ++ + E EAQ + + N ++ C G S D D LFGA + R++
Sbjct: 131 IIEGSKKLLEILGVPYIQALGEGEAQASYMVENGDAWCVG--SQDYDCILFGATRMVRNL 188
Query: 119 WL-GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
+ G + + + + + R L+ +A+L+G+D+++GV+G+G ++ +++K GD
Sbjct: 189 TITGGKANLELITLKKVLENMEITREQLVDIAILVGTDFNRGVKGVGAKTGLKLIKKHGD 248
Query: 178 --NVV 180
NV+
Sbjct: 249 IFNVI 253
>gi|405953608|gb|EKC21238.1| Flap endonuclease 1-A [Crassostrea gigas]
Length = 376
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 35 SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 94
+E D++N++K + + + + +E K L +G+P + EAEAQCA L
Sbjct: 114 AEEAGDEENIEKFNRRLVKVSKQHN---EECKELLKYMGIPFINAPGEAEAQCAALVKAG 170
Query: 95 LCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLL 152
+ D D FG + R++ + E + + Y + + +LG ++ I L +LL
Sbjct: 171 KVYATGTEDMDALTFGTTVLLRNLTVAEARKLPIKEYYYNRVLEELGLTKDEFIDLCILL 230
Query: 153 GSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 206
G DY +RG+GP+ A ++K + E L + K + E W +K
Sbjct: 231 GCDYCDSIRGIGPKRAIDLIKQ-------HKTIDEILKHLDSKKYTVPEDWMYK 277
>gi|389582194|dbj|GAB64749.1| flap exonuclease [Plasmodium cynomolgi strain B]
Length = 624
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 15 LNGSIPAIKLSTYRRR---LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIK---EAKAL 68
+G+ P +K S +R E+ + K + +++ G K EAK L
Sbjct: 87 FDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTKKQNEEAKKL 146
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG------- 121
+G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 147 LTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANASSANQN 206
Query: 122 ------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+RGY++ ++ + + L N I +L G DY ++G+G ++A ++K
Sbjct: 207 KNKNSSKRGYILTEINLEQVLKGLNLSMNEFIDFCILCGCDYCDTIKGIGSKTAYNLIK 265
>gi|337283806|ref|YP_004623280.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
gi|334899740|gb|AEH24008.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
Length = 341
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
++++AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 ALVEDAKKLLELMGIPVIQAPSEGEAQAAYIAAKGAVYASASQDYDSLLFGAPRLVRNLT 189
Query: 120 L-------GERGYVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+ YV ++++ + L R LI LA+L+G+DY+ GV+G+GP+
Sbjct: 190 ITGKRKLPGKDVYVDVKPELIVLEEVLKALKIDREKLIELAILVGTDYNPGGVKGIGPKK 249
Query: 168 ACQIVKSVGD 177
A +IV+ D
Sbjct: 250 ALEIVRHSKD 259
>gi|18312112|ref|NP_558779.1| flap endonuclease-1 [Pyrobaculum aerophilum str. IM2]
gi|28380018|sp|Q8ZYN2.1|FEN_PYRAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|18159543|gb|AAL62961.1| DNA endonuclease rad2 homolog [Pyrobaculum aerophilum str. IM2]
Length = 346
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M+ EAK L +GVP ++ E EAQ A + + C S D D LFG+ + R++
Sbjct: 133 SEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHCWAVGSQDYDSLLFGSPKLVRNL 192
Query: 119 WLGERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 167
+ + + E+D + R L R LI LA+LLG+DY+ GV G+GP+
Sbjct: 193 AVSPKRKIGEEVIELTPEIIELDAVLRALRLKNREQLIDLAILLGTDYNPDGVPGVGPQK 252
Query: 168 ACQIVKSVG 176
A +++ G
Sbjct: 253 ALKLIWEFG 261
>gi|302348204|ref|YP_003815842.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
gi|302328616|gb|ADL18811.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
Length = 350
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M+ EAK L +G+P ++ + EAQ A L + S D D LFGA + R++
Sbjct: 132 SDMVSEAKRLLDYMGIPWVQAPADGEAQAAHLAQKGDAWAAGSQDYDSLLFGAPRLVRNL 191
Query: 119 WL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R YV V E+ D+ + LG R LI L +L+G+D+ G++G GP+
Sbjct: 192 AITGKRKLPNKDEYVEVKPEIIDLNAMLKALGITREQLILLGILVGTDFDPDGIKGYGPK 251
Query: 167 SACQIVKSVGD 177
+A VK V D
Sbjct: 252 TALNFVKGVKD 262
>gi|444323335|ref|XP_004182308.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
gi|387515355|emb|CCH62789.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 6/191 (3%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EAK L +G+P + EAEAQCA L + S D D + + R + E
Sbjct: 137 EEAKKLLGLMGIPYITAPSEAEAQCAELAKAGVVYAAASEDMDTLCYRVPHLLRHLTFSE 196
Query: 123 RGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NV 179
+E+D + R L I L ++LG DY +RG+GP +A +++K G
Sbjct: 197 AKKEPIHELDVEVVLRGLDLTIEQFIDLGIMLGCDYCDSIRGVGPVTALKLIKEFGSLEK 256
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPF-SQVID 238
+++ + E ++K E W +K +E N ++ + G D L+ P ++I+
Sbjct: 257 IVEHFSEENEQKGGKSKYKIPENWPYK-EARELFTNPDV-IQGKDVELKWTPPKEEELIE 314
Query: 239 AYSNPKCYSAD 249
K +S D
Sbjct: 315 FLCTEKMFSED 325
>gi|408404695|ref|YP_006862678.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365291|gb|AFU59021.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 341
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M++E+K L LG+P ++ + EA A L L S D D LFGA+ + R++ +
Sbjct: 131 MVEESKKLLSYLGIPYIQAPSDGEAAAAYLTRRELAFAAASQDYDSILFGAKKLVRNLAI 190
Query: 121 -GERG------YV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 168
G+R Y+ +E D + +++G LI + +L+G+D++ G G+GP++A
Sbjct: 191 SGKRKVPNRNVYIDVEPEIFEHDKVLQEIGLTHEQLIDVGILIGTDFNPGGFPGIGPKTA 250
Query: 169 CQIVKSVG 176
+++K G
Sbjct: 251 LKLIKENG 258
>gi|402580560|gb|EJW74510.1| hypothetical protein WUBG_14580, partial [Wuchereria bancrofti]
Length = 266
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EAK L +G+P L+ EAEAQCA L S D D FG+ + R + E
Sbjct: 139 EEAKRLVTLMGIPILDAPCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASE 198
Query: 123 RGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ EM + + + G + L +LLG DY +RG+GP+ A +++K
Sbjct: 199 AKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRGIGPKKAFELIK 251
>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
Length = 354
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+KEAK L ++G+P ++ EE EA+ A + + L S D D LFGA + R++ +
Sbjct: 135 MVKEAKELLDAMGIPVIQAAEEGEAEAAYIAKKGLAWATASQDYDSLLFGAPRLVRNLTI 194
Query: 121 -------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+ Y+ E++ + + LG LI +A+L+G+DY+ GV G+GP++A
Sbjct: 195 TGKRKLPGKDIYIEIKPEIIELEKLLKTLGITHEQLIDIAILIGTDYNPDGVEGIGPKTA 254
Query: 169 CQIVKSVG 176
Q++K+ G
Sbjct: 255 YQLIKAYG 262
>gi|374327648|ref|YP_005085848.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
gi|356642917|gb|AET33596.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
Length = 346
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M++E++ L +GVP ++ E EAQ A + ++ C S D D LFG+ + R++
Sbjct: 133 SEMVEESRKLLSYMGVPWVQAPSEGEAQAAYMVVKGHCWAVGSQDYDALLFGSPRLVRNL 192
Query: 119 WLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 167
+ + V E+D + + L R LI LA+LLG+DY+ GV G+GP+
Sbjct: 193 AVSPKRRVGEEVVELAPEIIELDAVLKALRLKNREQLIDLAILLGTDYNPDGVPGMGPQK 252
Query: 168 ACQIVKSVG 176
A +++ G
Sbjct: 253 ALKLIWEFG 261
>gi|156094601|ref|XP_001613337.1| flap exonuclease [Plasmodium vivax Sal-1]
gi|317376189|sp|A5KAL1.1|FEN1_PLAVS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148802211|gb|EDL43610.1| flap exonuclease, putative [Plasmodium vivax]
Length = 623
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-- 121
EAK L +G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAS 201
Query: 122 -----------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
+RGY++ ++ + + L N I +L G DY ++G+G ++A
Sbjct: 202 SANQNKNKNSSKRGYILTEINLEQVLKGLNLSMNEFIDFCILCGCDYCDTIKGIGSKTAY 261
Query: 170 QIVK 173
++K
Sbjct: 262 NLIK 265
>gi|448622799|ref|ZP_21669448.1| flap endonuclease-1 [Haloferax denitrificans ATCC 35960]
gi|445753307|gb|EMA04724.1| flap endonuclease-1 [Haloferax denitrificans ATCC 35960]
Length = 326
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L G+D+++G+ G+GP++A ++VK GD
Sbjct: 202 DATLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKVVKEHGD 247
>gi|392885946|ref|NP_491891.2| Protein XPG-1 [Caenorhabditis elegans]
gi|351063324|emb|CCD71482.1| Protein XPG-1 [Caenorhabditis elegans]
Length = 820
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P +E EAEAQC L L DG S DSD++ FGA+ VYR ++ R E
Sbjct: 480 GIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHMFSKNRRVQRYGEQT 539
Query: 133 DIERK----LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
R R I++ALL G DY G+ +G A ++V
Sbjct: 540 TANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALELV 583
>gi|345486309|ref|XP_001603157.2| PREDICTED: exonuclease 1-like [Nasonia vitripennis]
Length = 730
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
V C+ EA+AQ A LN+ + D + DSD+ LFG + ++ + GY V E D
Sbjct: 141 NVDCIVAPYEADAQLAYLNISGIVDVVITEDSDLTLFGCKKIF--FKMDMYGYGVLVEQD 198
Query: 133 DIERKLG-----FGRNSLITLALLLGSDYSQGVRGLGPESACQ-IVKSVGDNV--VLQRI 184
+ +G F + + +L G DY + G+G AC+ IVK+ DN+ L R+
Sbjct: 199 RLHLAMGLRLPDFHMDKFRHMCILSGCDYLASLPGIGLNKACKFIVKNTDDNIYNALLRL 258
Query: 185 AS 186
AS
Sbjct: 259 AS 260
>gi|119872195|ref|YP_930202.1| flap endonuclease-1 [Pyrobaculum islandicum DSM 4184]
gi|166973706|sp|A1RSC7.1|FEN_PYRIL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119673603|gb|ABL87859.1| flap endonuclease 1 [Pyrobaculum islandicum DSM 4184]
Length = 346
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M+++AK L +GVP ++ E EAQ A + C S D D LFG+ + R++
Sbjct: 133 SDMVEDAKKLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNL 192
Query: 119 WLGERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 167
+ R + E+D + + L R LI LA+LLG+DY+ GV G+GP+
Sbjct: 193 AVSPRRKIGEEVIELSPEIIELDAVLKSLRLKNREQLIDLAILLGTDYNPDGVPGVGPQK 252
Query: 168 ACQIVKSVG 176
A ++V G
Sbjct: 253 ALKLVWEFG 261
>gi|389750370|gb|EIM91541.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 579
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+G CL+ EAEA+ A L+ E D S D D FGAR V R + E + + Y
Sbjct: 120 MGFLCLDAPGEAEAELARLSEEGFIDAVMSEDIDALAFGARAVIRIVNFSEDVFKI-YHA 178
Query: 132 DDIERK--LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQ 182
D E L R ++ +ALL G DY +G+ G G +A ++ + +V+LQ
Sbjct: 179 ADCENNPDLRLTRAGIVLVALLSGGDYDKGLTGFGATTAIRVARYGLGDVLLQ 231
>gi|156553807|ref|XP_001603401.1| PREDICTED: flap endonuclease 1-like [Nasonia vitripennis]
Length = 381
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EAK L +G+P ++ EAEAQCA + + D D FG + R + E
Sbjct: 139 EEAKQLLTLMGIPFIDAPCEAEAQCAAMVKSGKVYATATEDMDALTFGCNVLLRRLTFSE 198
Query: 123 RGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ E+ D + LG R+ I L ++LG DY+ ++G+GP+ A +++K+
Sbjct: 199 ARKMPIQEIQYDKVLNGLGLTRDEFIDLCIMLGCDYTTSIKGVGPKRAIELIKN 252
>gi|320202935|ref|NP_001188509.1| flap endonuclease-1 [Bombyx mori]
gi|268044461|gb|ACY92094.1| flap endonuclease-1 [Bombyx mori]
Length = 380
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EAK L +GVP ++ EAEAQCA L + D D FGA + R + E
Sbjct: 139 EEAKQLLKLMGVPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALTFGAPVLLRHLTFSE 198
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V + ++++ + L +N I L +LLG DY +RG+GP+ A +++
Sbjct: 199 ARKMPVQEFHLNNVLQGLELKQNEFIDLCILLGCDYCGSIRGVGPKRAIDLIRQ------ 252
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFK 206
R E L + K W ++
Sbjct: 253 -HRTLDEVLKNIDTEKYQPPTDWDYE 277
>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
Length = 381
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +GVP +E EAEAQCA + L + D D FG+ + R + E
Sbjct: 140 EAKQLLTLMGVPYIEAPCEAEAQCAAMVKGGLVYATATEDMDALTFGSNVLLRHLTFSEA 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ E + + L + + + L +LLG DY++ +RG+GP+ A +++K
Sbjct: 200 RKMPVQEIHLSKVLEGLELDQKAFVDLCILLGCDYTESIRGIGPKRAIELIK 251
>gi|340052549|emb|CCC46830.1| putative flap endonuclease-1 (FEN-1), fragment [Trypanosoma vivax
Y486]
Length = 393
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K + R + Q D + ++KM + E ++EA
Sbjct: 89 FDGKAPTLKSKELQNRRQKADDAIQKFKKAQEEGDAEMMEKMGKRTVRLTQE---QMEEA 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L +G+P ++ EAEAQCA L ++ + D D FGA + R + E +
Sbjct: 146 KKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALTFGAPIMLRHLTYSEAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + +DDI + G + L +LLG DY + G+GP A + +K
Sbjct: 206 RPIAEFHLDDILQTSGMTMEQFVDLCILLGCDYVPKIPGIGPHKAWEGIK 255
>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
gi|28380024|sp|Q9V0P9.1|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
gi|380741502|tpe|CCE70136.1| TPA: flap endonuclease-1 [Pyrococcus abyssi GE5]
Length = 343
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++
Sbjct: 130 MLIEDAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G + E ++++ ++L R LI LA+L+G+DY+ G++G+GP+
Sbjct: 190 ITGKRKMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 168 ACQIVKSVGD 177
A +IVK D
Sbjct: 250 ALEIVKYSKD 259
>gi|426195250|gb|EKV45180.1| hypothetical protein AGABI2DRAFT_225025 [Agaricus bisporus var.
bisporus H97]
Length = 575
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 64 EAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
E++ + ++G+PC E G E E + L L+ + D S D+D+ ++GA V G
Sbjct: 365 ESREILEAMGIPCYEIQGEHEGEGVASSLVLQGMADYVVSEDTDVLVYGAPIVRNFTSHG 424
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
V+ +D+ L ++ I A+LLG+D+SQ +R +GP A +++K
Sbjct: 425 NPLTVI--HGNDVREALDLSNDACIDFAILLGTDFSQRIRNVGPIRALKLIK 474
>gi|91773853|ref|YP_566545.1| flap endonuclease-1 [Methanococcoides burtonii DSM 6242]
gi|121684238|sp|Q12UT1.1|FEN_METBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|91712868|gb|ABE52795.1| FEN1 flap endonuclease with 5'-3' exonuclease activity
[Methanococcoides burtonii DSM 6242]
Length = 338
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 12/139 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MI ++ L +G+P ++ E EAQ + + + D S D D FLFGA V R++ +
Sbjct: 131 MIDDSVRLLELMGIPYVKAPSEGEAQASYMVQKGDADYIGSQDYDSFLFGAPQVVRNLTI 190
Query: 121 -GERG------YV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+R YV + D +LG R LI +A+ +G+DY+ G+ +GP+ A
Sbjct: 191 TGKRKLPKKNIYVDVKPEVLSLVDSLGELGITRQQLIDIAMCVGTDYNTGLENIGPKRAL 250
Query: 170 QIVKSVGD-NVVLQRIASE 187
++VK GD VVL+ + +
Sbjct: 251 KLVKEHGDIKVVLKELGKD 269
>gi|222445719|ref|ZP_03608234.1| hypothetical protein METSMIALI_01361 [Methanobrevibacter smithii
DSM 2375]
gi|222435284|gb|EEE42449.1| XPG I-region [Methanobrevibacter smithii DSM 2375]
Length = 187
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER-GYVVCYE 130
+G+P +E E EAQ A L S D D LFGA+ V R++ + G + Y
Sbjct: 2 MGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAINSNLGNLEYYN 61
Query: 131 MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + +L R LI + +L+G+D+S+G++G+G ++A ++ K
Sbjct: 62 LKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAK 104
>gi|326919868|ref|XP_003206199.1| PREDICTED: flap endonuclease 1-like [Meleagris gallopavo]
Length = 381
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K RR SE + ++ N++K S + + + E
Sbjct: 85 FDGKPPQLKSGELARRTERRSEAEKHLQEAQEAGEETNIEKFSKRLVKVTQQHT---DEC 141
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K L + +G+P +E EAEA CA L + D D FG+ + R + E
Sbjct: 142 KKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASETKK 201
Query: 126 VVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + ++ I + LG + L +LLG DY + +RG+GP+ A +++K
Sbjct: 202 LPIQEFHLNRILQDLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIK 251
>gi|398398872|ref|XP_003852893.1| hypothetical protein MYCGRDRAFT_40040, partial [Zymoseptoria
tritici IPO323]
gi|339472775|gb|EGP87869.1| hypothetical protein MYCGRDRAFT_40040 [Zymoseptoria tritici IPO323]
Length = 517
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G P EAEA+CALL E + D S D D +FG+ + W E
Sbjct: 102 AKQLLKQFGFPWHVAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLKS-WTAESS 160
Query: 125 -----YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y ++ + G +I +AL+ G DY +G+ G GP+ AC ++
Sbjct: 161 QKTPTHVTVYRAEETTARSGLDTQGMILVALMSGGDYIVEGIPGCGPKVACDAARA 216
>gi|393234476|gb|EJD42038.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 234
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 18 SIPAIKLSTY----RRRLNSGSEVT--QDDKNLDKMSSLRRNMGSE-----FSCMIKEAK 66
S+P + L + R R G ++ +D + ++ M + G E C E K
Sbjct: 13 SLPLLPLFVFDGPERPRWKRGKRISRRKDMRLVEGMQEIIEAFGYECIHVSARCETDEVK 72
Query: 67 ALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-- 124
A G EAEA+ A LN + D S D D FLFGA V R + RG
Sbjct: 73 APG------------EAEAELAHLNRIGIIDAILSDDVDTFLFGASLVIRKYVVVVRGRA 120
Query: 125 ---YVVCYEMDDI--ERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK-SVGDN 178
+V CY DD+ + + LI +ALL G DY GVRG+G A + + GD
Sbjct: 121 DGNHVKCYRADDLRTHEDIALTQGGLILIALLSGGDYHPGVRGIGMGIARGLAQCGFGDQ 180
Query: 179 VV 180
+V
Sbjct: 181 LV 182
>gi|123335114|ref|XP_001294157.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121871805|gb|EAX81227.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 335
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K + +RL E + D + +DK S RR + + ++E
Sbjct: 54 FDGKPPEMKGAELAKRLERREEAQKELEKAIESGDQEAIDKFS--RRTVHLD-KTQVEEC 110
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG- 124
K L LGVP ++ EAEA+CA LN L D + D D F + R + G +G
Sbjct: 111 KQLLECLGVPYVDAPCEAEAECAALNKAGLVDAMATEDMDSLAFATPQLIRHLSYGAKGD 170
Query: 125 --YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ Y++ + K G R + +L+G DY ++G+G + A +++K
Sbjct: 171 DLLQIDYKI--MMEKSGLTREEFVDFCILMGCDYCDTIKGIGKKHAYELIK 219
>gi|409076423|gb|EKM76795.1| hypothetical protein AGABI1DRAFT_62861 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 575
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 64 EAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
E++ + ++G+PC E G E E + L L+ + D S D+D+ ++GA V G
Sbjct: 365 ESREILEAMGIPCYEIQGEHEGEGVASSLVLQGMADYVVSEDTDVLVYGAPIVRNFTSHG 424
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
V+ +D+ L ++ I A+LLG+D+SQ +R +GP A +++K
Sbjct: 425 NPLTVI--HGNDVREALDLSNDACIDFAILLGTDFSQRIRNVGPIRALKLIK 474
>gi|374723540|gb|EHR75620.1| flap endonuclease-1 [uncultured marine group II euryarchaeote]
Length = 342
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+ E K L LGVP ++ E E Q A++ + D + D D L+G + R++
Sbjct: 135 MVAETKQLLDLLGVPWVDAKAEGEGQAAVMAAKGQLDVVATQDWDALLYGTPLLVRNLMS 194
Query: 121 G---ERGYVVCYE---MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ G VV + +D++ + R LI LA+++G+D+ G+RG+GP++ +++K+
Sbjct: 195 HGSKQHGRVVQAQKIILDEVLSENELTRAQLIDLAIMIGTDFHPGIRGIGPKTGMKLIKA 254
Query: 175 VG 176
G
Sbjct: 255 HG 256
>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
gi|28380017|sp|Q8TXU4.1|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
Length = 348
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 13/130 (10%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
++++AK L +G+P ++ E EAQCA + S D D LFG+ + R+I
Sbjct: 127 SLVEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNIT 186
Query: 120 L-GER-----GYVV-----CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R G ++ ++D+ +LG R L+ LA+LLG+DY+ GV G+GP+
Sbjct: 187 IVGKRKHPHTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPK 246
Query: 167 SACQIVKSVG 176
A Q+++ G
Sbjct: 247 RALQLIRKYG 256
>gi|310796699|gb|EFQ32160.1| hypothetical protein GLRG_07304 [Glomerella graminicola M1.001]
Length = 869
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GERG----- 124
G P + EAEA+CALL + D S D D +FG R+ W G RG
Sbjct: 144 FGFPLHDAPGEAEAECALLQQRGIVDAVLSEDVDTIMFGCTRTLRN-WTAEGTRGAKTPT 202
Query: 125 YVVCYEMDD-IERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V Y++D+ + G R ++ +AL+ G DY +GV G G + AC+ K+
Sbjct: 203 HVSLYDVDELLSAGTGLDREGMVLVALMSGGDYIPEGVPGCGVKLACEAAKA 254
>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
gi|317374883|sp|A8J2Z9.1|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
Length = 396
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +GVP +E EAEAQCA + L G + D D FGA V R +
Sbjct: 141 ECKRLLRLMGVPVVEAPTEAEAQCAEMAKSGLVYGLATEDMDALTFGAPRVIRHLMAPSS 200
Query: 124 GYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
V E D R+L + I L +L+G DY +RG+G A Q++K G
Sbjct: 201 QNVPVQEFDREVALRELELTDDQFIDLCILMGCDYCGTIRGIGAVRALQMIKKHG 255
>gi|268568094|ref|XP_002640157.1| C. briggsae CBR-XPG-1 protein [Caenorhabditis briggsae]
Length = 886
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P +E EAEAQC L L DG S DSD++ FG + VYR ++ R E
Sbjct: 483 GIPWIEAPGEAEAQCVELEKLGLVDGVVSDDSDVWAFGVKHVYRHMFAKNRRVQRYGEQT 542
Query: 133 DIERK----LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
R R I++A+L G DY G+ +G A ++V
Sbjct: 543 AANRDNCKLFCLQREDYISIAILAGGDYCPGLVKVGAIGALELV 586
>gi|448546419|ref|ZP_21626583.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-646]
gi|448548406|ref|ZP_21627673.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-645]
gi|448557600|ref|ZP_21632789.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-644]
gi|445702872|gb|ELZ54812.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-646]
gi|445714157|gb|ELZ65924.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-644]
gi|445714501|gb|ELZ66263.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-645]
Length = 326
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K G L+ +A+L G+D+++G+ G+GP++A + V GD
Sbjct: 202 DATLDKHGITHEQLVDIAMLCGTDFNEGITGIGPKTAVKAVTEHGD 247
>gi|183232094|ref|XP_651701.2| DNA-repair protein [Entamoeba histolytica HM-1:IMSS]
gi|169802201|gb|EAL46315.2| DNA-repair protein, putative [Entamoeba histolytica HM-1:IMSS]
Length = 660
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+ +P + EAEAQC L + LCD ++DSDIF++GA+ V +++ + + Y
Sbjct: 480 INIPYIIAPGEAEAQCYQLEHDGLCDYIATNDSDIFVYGAKNVITNLFTS--SHPILYSA 537
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ L + + +LL+ SDYS G +GP +A I+ S
Sbjct: 538 STFDYSL----DQIRLYSLLVPSDYSNGFPNVGPITAKHIITS 576
>gi|449706507|gb|EMD46341.1| DNArepair protein, putative, partial [Entamoeba histolytica KU27]
Length = 661
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+ +P + EAEAQC L + LCD ++DSDIF++GA+ V +++ + + Y
Sbjct: 481 INIPYIIAPGEAEAQCYQLEHDGLCDYIATNDSDIFVYGAKNVITNLFTS--SHPILYSA 538
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ L + + +LL+ SDYS G +GP +A I+ S
Sbjct: 539 STFDYSL----DQIRLYSLLVPSDYSNGFPNVGPITAKHIITS 577
>gi|71425588|ref|XP_813131.1| DNA repair protein RAD2 [Trypanosoma cruzi strain CL Brener]
gi|70877987|gb|EAN91280.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EA+AQCA L+ + L D FS DSD+ + GA V R + R YVV Y
Sbjct: 470 GIPFVLSPHEADAQCAFLSQQRLVDAVFSEDSDVIVHGANVVLRGFFSKNR-YVVVYRQS 528
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFV 192
D+ G ++ L+ LALLLG DY++GV G+ A +I+ + +Q S L +
Sbjct: 529 DLA-MCGVDKDVLVALALLLGCDYAEGVDGVSLLEALRIITAFWHQESVQG-PSHVLDML 586
Query: 193 KRAKNS 198
KR +++
Sbjct: 587 KRWRDA 592
>gi|413932541|gb|AFW67092.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 411
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 20/207 (9%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY----VV 127
+GVP +E EAEAQCA L S D D FGAR R L + GY V
Sbjct: 149 MGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDTLTFGARRFLRH--LTDLGYKKSPVT 206
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASE 187
+++ + +LG + I L +L G DY + +RG+G + A ++++ G E
Sbjct: 207 EFDVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHG-------CIEE 259
Query: 188 GLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQ-VIDAYSNPKCY 246
L + + + S E W ++ + +L +E NV +P + ++D S +
Sbjct: 260 VLQNLNQTRFSVPEDWPYQ---EVRTLFKEPNVCAGIPDFTWTSPDPEGLMDFLSTENSF 316
Query: 247 SAD--SEAVHRV-LAQHLFQHARLHQV 270
S D ++AV ++ +A+ + R+ +
Sbjct: 317 SPDRVTKAVEKIKVARDRYSPGRMKHL 343
>gi|315230863|ref|YP_004071299.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
gi|315183891|gb|ADT84076.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
Length = 342
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGKVWASASQDYDSLLFGAPRLVRNLTI 190
Query: 121 GER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 168
R G V E ++++ ++L R LI LA+L+G+DY+ G++G+GP+ A
Sbjct: 191 TGRRKLPGKDVYVEVKPELIVLEEVLKELKIDREKLIELAILVGTDYNPGGIKGVGPKKA 250
Query: 169 CQIVKSVGD 177
+IV+ D
Sbjct: 251 LEIVRYSKD 259
>gi|389593155|ref|XP_003721831.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
gi|122048622|sp|Q4FYU7.1|FEN1_LEIMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|321438333|emb|CBZ12085.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
Length = 395
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K R +E + DD+ ++KMS + + I E+
Sbjct: 89 FDGKPPKLKADELEMRRQKAAEAERAFEKAKDAGDDEMMEKMSKRTVRVSRD---QIDES 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GER 123
K L +G+P ++ EAEAQCA L + + D D FG+ + R + + ++
Sbjct: 146 KKLLRLMGIPVIQAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNISDAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+V +D++ + G + + L +LLG DY V G+GP+ A + ++ G
Sbjct: 206 RPIVEIHLDEVLQTTGLSMDQFVDLCILLGCDYVPKVPGIGPQKAWEGIQRYG 258
>gi|37719664|gb|AAR01941.1| flap endonuclease 1 [Plasmodium falciparum]
Length = 648
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-- 121
EAK L +G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAT 201
Query: 122 ----------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+RGY++ ++ + + L + I +L G DY ++G+G ++A
Sbjct: 202 SNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYN 261
Query: 171 IVK 173
++K
Sbjct: 262 LIK 264
>gi|401424227|ref|XP_003876599.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492842|emb|CBZ28120.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 395
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K R +E + DD+ ++KMS + E I E+
Sbjct: 89 FDGKPPKLKADELEARRQKAAEAEKEFEKAKDAGDDEMMEKMSKRTVRVSRE---QIDES 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GER 123
K L +G+P ++ EAEAQCA L + + D D FG+ + R + + ++
Sbjct: 146 KKLLRLMGIPVIQAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTIMLRHLNISDAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
V +D++ + G + + L +LLG DY V G+GP+ A + ++ G
Sbjct: 206 RPVAEIHLDEVLQTTGLSMDQFVDLCILLGCDYVPKVPGIGPQKAWEGIQRYG 258
>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
gi|317376198|sp|B3RVF0.1|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
Length = 377
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 33 SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 92
S +E D N+DK + M E C +E K L +GVP ++ EAE+QCA L
Sbjct: 112 SEAEKEGDADNIDKFTRRTVRMTPE-HC--EEGKKLLKLMGVPVVQAPCEAESQCAALVK 168
Query: 93 ESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLAL 150
+ D D FG+ + R + E + + + + + ++L F I L +
Sbjct: 169 AGKVYATGTEDMDALTFGSNVMLRHLTFSEARKMPIQEFHLKNALQELNFSMEQFIDLCI 228
Query: 151 LLGSDYSQGVRGLGPESACQIV---KSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 206
LLG DY ++G+GP+ A ++ KS+ D +++ I+SE K + E W +K
Sbjct: 229 LLGCDYCDSIKGVGPKRAVGLIEKYKSIED--IVKNISSE--------KFTVPENWPYK 277
>gi|74824687|sp|Q9GZ01.1|FEN1_PLAFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|9885425|gb|AAG01445.1| flap endonuclease-1 [Plasmodium falciparum]
Length = 650
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-- 121
EAK L +G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAT 201
Query: 122 ----------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+RGY++ ++ + + L + I +L G DY ++G+G ++A
Sbjct: 202 SNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYN 261
Query: 171 IVK 173
++K
Sbjct: 262 LIK 264
>gi|154339662|ref|XP_001565788.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|317374905|sp|A4HFE4.1|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 395
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K R +E + DD+ ++KMS + E I+E+
Sbjct: 89 FDGKPPKLKADELETRRQKAAEAEREFEKAKDAGDDEMMEKMSKRTVRVSRE---QIEES 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GER 123
K L +GVP ++ EAEAQCA L + + D D FG+ + R + + ++
Sbjct: 146 KKLLQLMGVPVIQAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNISDAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
+ +D++ + G + + L +LLG DY V G+GP+ A + ++ G+
Sbjct: 206 RPIAEIHLDEVLQATGLSMDQFVDLCILLGCDYVPKVPGIGPQRAWEGIQRYGN 259
>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
gi|122094730|sp|Q178M1.1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|108878396|gb|EAT42621.1| AAEL005870-PA [Aedes aegypti]
Length = 380
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATATEDMDALTFGSNILLRHLTFSEA 199
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
+ V + D I + L R+ I L +LLG DY +RG+GP+ A +++
Sbjct: 200 RKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDYCDSIRGIGPKKAVELI 250
>gi|124505315|ref|XP_001351399.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
gi|74876406|sp|Q7K734.1|FEN1_PLAF7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|11559508|gb|AAG37989.1|AF093702_1 flap endonuclease 1 [Plasmodium falciparum]
gi|6562723|emb|CAB62862.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
Length = 672
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-- 121
EAK L +G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAT 201
Query: 122 ----------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+RGY++ ++ + + L + I +L G DY ++G+G ++A
Sbjct: 202 SNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCGCDYCDTIKGIGSKTAYN 261
Query: 171 IVK 173
++K
Sbjct: 262 LIK 264
>gi|409048628|gb|EKM58106.1| hypothetical protein PHACADRAFT_88937 [Phanerochaete carnosa
HHB-10118-sp]
Length = 538
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 64 EAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
E+K + ++GVPC+E G EAEA A + L D S D+D+ ++GA + R+I
Sbjct: 335 ESKEIIRAMGVPCIEPDGPFEAEALAASMVLHGQADYVASEDTDVIVYGA-PLMRNI-AK 392
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+V D+ L + ALLLG+D+SQ ++ +GP A + ++ G
Sbjct: 393 RSDPLVILNGTDVRAALELDHERFVDFALLLGTDFSQRIKNVGPTRALKFIREYG 447
>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
gi|317374916|sp|A7RRJ0.1|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
Length = 377
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 33 SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 92
S +E D +N+DK S + E + +E K L +G+P +E EAEAQCA L
Sbjct: 112 SKAEEAGDTENIDKFSRRLVRVTKEHN---EECKQLLKLMGIPYVEAPCEAEAQCAALVK 168
Query: 93 ESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLAL 150
+ D D FG + R + E + + + + ++ + G ++ I L +
Sbjct: 169 SGKVYATGTEDMDALTFGTTVMLRHLTFSEAKKMPIKEFHLQNVLSEAGLSQDEFIDLCI 228
Query: 151 LLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 206
LLG DY ++G+GP+ + +++ R + L + +K+ E W +K
Sbjct: 229 LLGCDYCDSIKGIGPKRSVDLIRQ-------HRSIDKILENIDTSKHPPPENWLYK 277
>gi|325968460|ref|YP_004244652.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
768-28]
gi|323707663|gb|ADY01150.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
768-28]
Length = 349
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++AK L + +G+P ++ + + EAQ A++ E S D D LFGA + R++ +
Sbjct: 135 MVEDAKKLLVLMGIPVVQAMADGEAQAAVIAKEGKAWAAGSQDYDSLLFGAPRLVRNLAI 194
Query: 121 GER-------GYV----VCYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 167
R YV E+++I R L R LI LA+LLG+D + GV G+GP+
Sbjct: 195 TGRRKLPNKDEYVEIRPEIIELNEILRALKLKDRIQLIDLAVLLGTDLNPDGVPGIGPQR 254
Query: 168 ACQIVKSVG 176
A ++++ G
Sbjct: 255 ALKLIQEFG 263
>gi|388498254|gb|AFK37193.1| unknown [Lotus japonicus]
Length = 366
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQD---------DKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K +RL+ +E T+D ++++K S + + + ++
Sbjct: 70 FDGKPPDMKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHN---EDY 126
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW--LGER 123
K L +GVP +E EAEAQCA L + S D D FGA R + ++
Sbjct: 127 KKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKK 186
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
V+ +E+ I +L + I L +L G DY +RG+G ++A ++++ G
Sbjct: 187 VPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHG 239
>gi|145592541|ref|YP_001154543.1| flap endonuclease-1 [Pyrobaculum arsenaticum DSM 13514]
gi|166973704|sp|A4WNC4.1|FEN_PYRAR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|145284309|gb|ABP51891.1| flap endonuclease 1 [Pyrobaculum arsenaticum DSM 13514]
Length = 346
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKMSSLRRNMGSEFSCMIKEAKAL 68
+G P KL+ R + + T++ + D+++ + + M+++AK L
Sbjct: 83 FDGKPPEFKLAEIEERRKAKEKATEELVRAIKEGRRDEVAKYAKRAIFLTNEMVEDAKKL 142
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV- 127
+GVP ++ E EAQ A + C S D D LFG+ + R++ + V
Sbjct: 143 LTYMGVPWVQAPSEGEAQAAYMARRGHCWAVGSQDYDSLLFGSPRLVRNLATSPKRKVGD 202
Query: 128 --------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGD 177
E+D + + L R LI LA+LLG+DY+ GV G+GP+ A +++ G
Sbjct: 203 EVVELSPEIIELDAVLKSLRLRSREQLIDLAILLGTDYNPDGVPGIGPQRALKLIWEFGS 262
Query: 178 NVVLQRIASEGLSF 191
L G++F
Sbjct: 263 LEKLLDTVLRGVTF 276
>gi|448583086|ref|ZP_21646555.1| flap endonuclease-1 [Haloferax gibbonsii ATCC 33959]
gi|445730043|gb|ELZ81635.1| flap endonuclease-1 [Haloferax gibbonsii ATCC 33959]
Length = 326
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L G+D+++G+ G+GP++A ++VK GD
Sbjct: 202 DATLDKHDITWEQLVDIAMLCGTDFNEGITGIGPKTAVKVVKEHGD 247
>gi|50556476|ref|XP_505646.1| YALI0F20042p [Yarrowia lipolytica]
gi|74632421|sp|Q6C116.1|FEN1_YARLI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49651516|emb|CAG78455.1| YALI0F20042p [Yarrowia lipolytica CLIB122]
Length = 389
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +G+P +E EAEAQCA L S D D FG+ + R + E
Sbjct: 152 EAKKLLTLMGIPIVEAPCEAEAQCAKLAEAGKVYAAASEDMDTLCFGSPVLLRHLTFSEA 211
Query: 124 GYVVCYEMD--DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+ E++ I L I L +LLG DY+ +RG+GP++A +++K G
Sbjct: 212 KKMPISEINFAKILEGLEMTHAQFIDLCILLGCDYADTIRGVGPQTALKLMKEHG 266
>gi|170097587|ref|XP_001880013.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645416|gb|EDR09664.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 853
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 95/245 (38%), Gaps = 38/245 (15%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD--- 117
+I K + + G C+ EAEA+ A LN + DG S D D FLFGA+TV R+
Sbjct: 104 LIPGMKQIVDAFGFECITAPGEAEAELAYLNHIGVIDGILSDDVDNFLFGAKTVIRNPSN 163
Query: 118 -------------IWLGERGYVVCYEMDDIERK--LGFGRNSLITLALLLGSDYSQGVRG 162
++ + Y + DI + + R +I + L+ G DY QG G
Sbjct: 164 SLSGNKSNPSLNSAGKDDKNHTRVYRLADINQNPDVLLTRGGMILIGLMSGGDYQQG--G 221
Query: 163 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 222
L S C + G L R G + AKN +E +N L E+ N
Sbjct: 222 L---SRCGTKTAHG----LARCGF-GDTLYTAAKNLSRERLPAFLDNWRNELRHELRTNS 273
Query: 223 TD----------HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA 272
+S+ + P ++ +Y NP + + + A+L C
Sbjct: 274 RGFIGRKSPTLANSIPEDFPDVDILLSYVNPITSESMGKTPPELRWTKEPDLAKLAATCE 333
Query: 273 QFFQW 277
+F+W
Sbjct: 334 FYFEW 338
>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
gi|317374890|sp|B4J6M4.1|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
Length = 388
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 139 REAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSE 198
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NV 179
+ V + D + + L I L +L+G DY + +RG+GP+ A +++KS D
Sbjct: 199 ARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIRGVGPKRAIELIKSYRDIET 258
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFK 206
+L+ I + K + E W++K
Sbjct: 259 ILENIDTN--------KYAVPENWNYK 277
>gi|379005480|ref|YP_005261152.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
gi|375160933|gb|AFA40545.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
Length = 346
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKMSSLRRNMGSEFSCMIKEAKAL 68
+G P KL+ R + + T++ + D+++ + + M+++AK L
Sbjct: 83 FDGKPPEFKLAEIEERRRAKEKATEELVRAIKEGRRDEVAKYAKRAIFLTNEMVEDAKRL 142
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV- 127
+GVP ++ E EAQ A + C S D D LFG+ + R++ + V
Sbjct: 143 LTYMGVPWVQAPSEGEAQAAYMARRGHCWAVGSQDYDSLLFGSPRLVRNLAASPKRKVGD 202
Query: 128 --------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGD 177
E+D + + L R LI LA+LLG+DY+ GV G+GP+ A +++ G
Sbjct: 203 EVVELSPEIIELDTVLKSLRLRSREQLIDLAILLGTDYNPDGVPGIGPQRALKLIWEFGS 262
Query: 178 NVVLQRIASEGLSF 191
L G++F
Sbjct: 263 LEKLLDTVLRGVTF 276
>gi|448726443|ref|ZP_21708848.1| flap endonuclease-1 [Halococcus morrhuae DSM 1307]
gi|445795097|gb|EMA45633.1| flap endonuclease-1 [Halococcus morrhuae DSM 1307]
Length = 325
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ A + D S D D LFGA RD L +G C +
Sbjct: 144 LDVPIVEAPAEGEAQAAHMARTGTVDYAGSEDYDTLLFGAPHTLRD--LTSKGDPECMAL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D + L+ + +L G+D++ GV G+GP++A ++V GD
Sbjct: 202 DATLDEHDLTWEQLVDVGILCGTDFNDGVSGIGPKTAVKLVGEHGD 247
>gi|282165429|ref|YP_003357814.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
gi|282157743|dbj|BAI62831.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
Length = 339
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+IK++K L +G+P L E EAQ A + + D S D D LFGA + R++ +
Sbjct: 130 IIKDSKELLGYMGMPFLIAPSEGEAQAAYMVQKGAADFVGSQDYDSLLFGAPRMVRNVTI 189
Query: 121 G------ERGYVV-----CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
RG V E+ ++ L R LI + +L+G+D++ G+ +GP++A
Sbjct: 190 TGRRKIPRRGVYVDVKPQIVELKEVLETLEVTREQLIDMGILVGTDFNPGIYKVGPKTAL 249
Query: 170 QIVKSVGD 177
++VK D
Sbjct: 250 KLVKKHPD 257
>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
Length = 380
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 8/167 (4%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEV------TQDDKNLDKMSSLRRNMGSEFSCMIKEAKAL 68
+G P +K +R E ++ N +++ R + + E K L
Sbjct: 85 FDGKPPELKSGELSKRAEKREEAQKALAKAEESGNTEEVDKFSRRLVKVTKDHVAECKEL 144
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 128
+G+P +E EAEAQCA L + D D FG+ + R + E +
Sbjct: 145 LKLMGIPYIEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSNIILRHLTFSEARKMPV 204
Query: 129 YE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
E +D + +L +N I L +LLG DY ++G+GP+ A +++K
Sbjct: 205 QEIYLDKVLAELEMTQNEFIDLCILLGCDYCDSIKGIGPKRAIELIK 251
>gi|367034598|ref|XP_003666581.1| hypothetical protein MYCTH_2311387 [Myceliophthora thermophila ATCC
42464]
gi|347013854|gb|AEO61336.1| hypothetical protein MYCTH_2311387 [Myceliophthora thermophila ATCC
42464]
Length = 894
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 110/282 (39%), Gaps = 34/282 (12%)
Query: 16 NGSIPAIKLSTYRRRLNSGSEVTQ----DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLS 71
G+ PAI+ YR G + D N +R+ G S I AK L
Sbjct: 51 GGANPAIRTLFYRLTRLLGLAIRPIFVFDGPNKPAFKRNKRSSGRGDSVSIAMAKRLIRL 110
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GERG----- 124
G E EAEA+CA+L + + D S D D +FG R R+ W G +G
Sbjct: 111 FGFTIHEAPGEAEAECAMLQQKGIVDAVLSEDVDTIMFGCRKTLRN-WSAEGSKGSKTPT 169
Query: 125 YVVCYEMDDIER-KLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQ 182
+V ++ D I R ++ +AL+ G DY +GV G G + AC+ ++ G L
Sbjct: 170 HVSMFDADAIAAGPTKLDREGMVLVALMSGGDYLPEGVPGCGVKVACEAARA-GFGRDLC 228
Query: 183 RIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS---LQRETPFSQVIDA 239
RI KRA W K E E T H + + P +++
Sbjct: 229 RI--------KRADRDGLAAW--KARLLHELRTNESGFFRTRHKALHIPEDFPNMEILRY 278
Query: 240 YSNPKCYSADSEAVHRV----LAQHLFQHARLHQVCAQFFQW 277
Y++P + AV RV LA L + Q F W
Sbjct: 279 YTHPVV--SREAAVDRVKREFLAAGNVDIVGLREFTRQTFDW 318
>gi|453084814|gb|EMF12858.1| flap endonuclease [Mycosphaerella populorum SO2202]
Length = 393
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EA+ L +GVP + EAEAQCA+L S D D F A + R + E+
Sbjct: 140 EAQRLLKLMGVPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFNAPVLLRHLTFSEQ 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
E +D + L F N I + +LLG DY V+G+GP++A ++K ++ L
Sbjct: 200 RKEPIQEIHLDRVLEGLDFDLNQFIDMCILLGCDYLDPVKGIGPKNAHALIK---EHKTL 256
Query: 182 QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 224
+++ K K + E W ++ + L QE +V D
Sbjct: 257 EKVVE---HIEKTGKYTLPEDWPYQ---EARLLFQEPDVRAAD 293
>gi|375083121|ref|ZP_09730153.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
gi|374742207|gb|EHR78613.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
Length = 340
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++
Sbjct: 130 MLIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGHVWASASQDYDSLLFGTPRLVRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G + E ++++ ++L R L+ LA+L+G+DY+ G++G+GP+
Sbjct: 190 ITGKRKLPGKDIYVEVKPELIVLEEVLKELKITREKLVELAILVGTDYNPGGIKGIGPKK 249
Query: 168 ACQIVKSVGD 177
A +IVK D
Sbjct: 250 ALEIVKYSKD 259
>gi|387595247|gb|EIJ92872.1| flap endonuclease 1-B [Nematocida parisii ERTm1]
Length = 342
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW-- 119
++ A+ L +G+P + EAE CA LN+ +G S D D FG + + R+ +
Sbjct: 135 VESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSEDMDSLAFGGKILLRNFFPA 194
Query: 120 -LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ ++ V+ ++ + ++ G ++ I + +LLG DY Q ++G+GP+ +V+
Sbjct: 195 LMKKKLSVMEISLEMVLKQTGLDQSEFIDMCILLGCDYCQKLKGMGPKKVYDLVQ 249
>gi|387592620|gb|EIJ87644.1| flap endonuclease 1-B [Nematocida parisii ERTm3]
Length = 371
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW-- 119
++ A+ L +G+P + EAE CA LN+ +G S D D FG + + R+ +
Sbjct: 135 VESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSEDMDSLAFGGKILLRNFFPA 194
Query: 120 -LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ ++ V+ ++ + ++ G ++ I + +LLG DY Q ++G+GP+ +V+
Sbjct: 195 LMKKKLSVMEISLEMVLKQTGLDQSEFIDMCILLGCDYCQKLKGMGPKKVYDLVQ 249
>gi|88603762|ref|YP_503940.1| flap endonuclease-1 [Methanospirillum hungatei JF-1]
gi|121721338|sp|Q2FNC9.1|FEN_METHJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|88189224|gb|ABD42221.1| flap endonuclease 1 [Methanospirillum hungatei JF-1]
Length = 333
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 15/175 (8%)
Query: 15 LNGSIPAIKLSTYRRRLN----SGSEVTQDDKNLDKMSSLRRNMGSEF--SCMIKEAKAL 68
+G P +K T + R + S + Q K D + R M S + ++ A+ L
Sbjct: 80 FDGKSPEMKGRTIQERRDVREESKEKWDQAKKEGDLAGAFRYAMSSTAIDAYILSSARQL 139
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-GER---G 124
+G+P ++ E EAQ A + L+ D S D D LFG + R++ + G+R G
Sbjct: 140 IQLMGLPVVDAPSEGEAQGAYMVLKGDADYVVSQDYDTLLFGTPVLVRNLTISGKRRLHG 199
Query: 125 YVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ + + D+ L R LI +A+L G+D++ G+RG+G ++ + +KS
Sbjct: 200 RQITVQPERIVLSDVLSTLDITREQLIEIAILTGTDFNPGIRGIGAKTGLKKIKS 254
>gi|307214986|gb|EFN89831.1| Flap endonuclease 1-B [Harpegnathos saltator]
Length = 380
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 36 EVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 95
+ ++D + + + R + +EAK L +G+P ++ EAEAQCA L
Sbjct: 112 QAAEEDGDAEAIDKFNRRLVKVTKTHAEEAKQLLKLMGIPYIDAPCEAEAQCAALVKAGK 171
Query: 96 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLG 153
+ D D FG + R + E + E+ D + L N I L ++LG
Sbjct: 172 VFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLGGLELNHNEFIDLCIMLG 231
Query: 154 SDYSQGVRGLGPESACQIVKS 174
DY+ ++G+GP+ A +++K+
Sbjct: 232 CDYTGSIKGVGPKRAIELIKN 252
>gi|345317512|ref|XP_001518788.2| PREDICTED: flap endonuclease GEN homolog 1-like [Ornithorhynchus
anatinus]
Length = 802
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
LG+P ++ EAEA CA LN DGC + D D+FL+GA+TVYR+ +
Sbjct: 78 LGIPWVQAAGEAEAMCAYLNANHYVDGCLTDDGDVFLYGAQTVYRNFTM 126
>gi|407847469|gb|EKG03173.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EA+AQCA L+ + L D FS DSD+ + GA V R + R YVV Y
Sbjct: 470 GIPFVLSPHEADAQCAFLSQQRLVDAVFSEDSDVIVHGANVVLRGFFSKNR-YVVVYRQS 528
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
D+ G ++ L+ LALLLG DY++GV G+ A +I+ +
Sbjct: 529 DLA-MCGVDKDVLVALALLLGCDYAEGVDGVSLLEALRIITA 569
>gi|448738796|ref|ZP_21720817.1| flap endonuclease-1 [Halococcus thailandensis JCM 13552]
gi|445801182|gb|EMA51526.1| flap endonuclease-1 [Halococcus thailandensis JCM 13552]
Length = 325
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ A + D S D D LFGA RD L +G C +
Sbjct: 144 LDVPIVEAPAEGEAQAAHMARTGTVDYAGSEDYDTLLFGAPRTLRD--LTSKGDPECMAL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D + L+ + +L G+D++ GV G+GP++A ++V GD
Sbjct: 202 DATLDEHDLTWEQLVDVGILCGTDFNDGVSGIGPKTAVKLVGEHGD 247
>gi|378727189|gb|EHY53648.1| DNA excision repair protein ERCC-5 [Exophiala dermatitidis
NIH/UT8656]
Length = 768
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 32/207 (15%)
Query: 59 SCMIKE-AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
+C+ E +K L + P EAEA+CA+L L D S D D +FG+ RD
Sbjct: 97 TCISNEMSKRLVQAFRFPSHTAPGEAEAECAMLQKHGLVDAVMSQDVDAIMFGSSLTLRD 156
Query: 118 IWLGERG-------YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESAC 169
W E +V ++ I+ G + +I +ALL G DY + GV G+G AC
Sbjct: 157 -WSKEASKHNKSPTHVNVLDLARIKSLSGLDPDGMILVALLSGGDYDEAGVPGIGSTLAC 215
Query: 170 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
+I + A G V+ A+ + ++G E L E+ N + + +R
Sbjct: 216 EIAR-----------AGFGADLVELARKNDEDG----LREWRERLEFELETNESGYFRRR 260
Query: 230 ET-------PFSQVIDAYSNPKCYSAD 249
+ P +++ Y NP D
Sbjct: 261 KNVKLPENFPDRRILGYYINPAVTPED 287
>gi|219121896|ref|XP_002181293.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407279|gb|EEC47216.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 696
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 20/155 (12%)
Query: 52 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 111
R G+ F ++ L LG+P E EA CALL+ ++ DG S+D D LFGA
Sbjct: 130 RRSGTTFWKAGEQCHDLLTRLGIPVFRAKAEGEALCALLSQRNIVDGVISNDGDCLLFGA 189
Query: 112 RTVYRDIWLGE--RGYVVCYEM----------------DDIERKLGFGRNSLITLALLLG 153
R VY + G V+ Y++ D + L R L++ ALL G
Sbjct: 190 RVVYTKFSVENLVEGSVMRYDLGNLRALIDHAGDKEASDQLTGSLSLSRFDLLSFALLTG 249
Query: 154 SDYS-QGVRGLGPESACQIVKSVG-DNVVLQRIAS 186
SD + G+ +G + A + ++ DN + +AS
Sbjct: 250 SDLAGNGLPKVGHKKAIRFIRKCQIDNPLTTEMAS 284
>gi|268571629|ref|XP_002641105.1| Hypothetical protein CBG17486 [Caenorhabditis briggsae]
Length = 437
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 26/185 (14%)
Query: 51 RRNMG-SEFSCM---IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
RR+ G S F+ + + + L +GV + + EAQCA L + GC ++D D
Sbjct: 98 RRSFGDSLFTNLADPVYKTNMLLSQMGVKVIISPGDGEAQCARLEELEVTSGCITTDFDY 157
Query: 107 FLFGARTVYRDIWLGERGYVVCYEM-------DDIERKLGFGRNSLITLALLLGSDYSQ- 158
FLFG + +YR + + +++ +IE+K+ R LI+ A+LLG DY Q
Sbjct: 158 FLFGGKNLYRFDFTASGNVALLHDVVHLSLGRMNIEKKV--DRPHLISTAILLGCDYFQR 215
Query: 159 GVRGLGPESACQIVKSVGD--------NVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNK 210
GV+ +G + I+ GD +V+L R S+VK ++ E S K +
Sbjct: 216 GVQNIGIVTVFDILAEFGDDGNEDVDPHVILDRF----YSYVKEEIPARSEDSSRKLRLR 271
Query: 211 EESLN 215
+ N
Sbjct: 272 RKKFN 276
>gi|68074223|ref|XP_679026.1| flap exonuclease [Plasmodium berghei strain ANKA]
gi|74991237|sp|Q4Z015.1|FEN1_PLABA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56499663|emb|CAH96377.1| flap exonuclease, putative [Plasmodium berghei]
Length = 478
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI----- 118
EAK L +G+P +E EAEAQCA L + + D+D +FG + + R++
Sbjct: 141 EAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATATEDADALVFGTKILIRNLNANAS 200
Query: 119 -------WLGERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+RGY++ ++ + + L + I +L G DY ++G+G ++A
Sbjct: 201 SNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFCILCGCDYCDTIKGIGSKTAYN 260
Query: 171 IVK 173
++K
Sbjct: 261 LIK 263
>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
gi|317374896|sp|B4LM90.1|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
Length = 386
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
D+ +DK + + E S +EAK L +GVP ++ EAEAQCA L
Sbjct: 119 DEAEIDKFNRRLVRVTKEHS---REAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYAT 175
Query: 100 FSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
+ D D FG+ + R + E + V + D + + L I L +L+G DY
Sbjct: 176 ATEDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYC 235
Query: 158 QGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFK 206
+ ++G+GP+ A +++KS D +L+ I + +K E W++K
Sbjct: 236 ESIKGVGPKRAIELIKSYRDIETILENIDT--------SKYPVPENWNYK 277
>gi|408381751|ref|ZP_11179299.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
gi|407815682|gb|EKF86252.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
Length = 328
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
F +++ +K L +G+P ++ E EAQ + + + S D D LFGA + ++
Sbjct: 128 FPEIVEGSKKLIKLMGIPYIQAKGEGEAQASYMVAQGDAWCVASQDYDCMLFGAPRMVKN 187
Query: 118 IWL-GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+ + G + E++ I L R L+ LA+++G+D++QG++G+G + +++K G
Sbjct: 188 LTISGTQKTPEIIELNKILENLSITREQLVDLAIMVGTDFNQGIKGIGAKKGLKLIKEHG 247
Query: 177 D 177
D
Sbjct: 248 D 248
>gi|150866877|ref|XP_001386616.2| hypothetical protein PICST_33639 [Scheffersomyces stipitis CBS
6054]
gi|149388133|gb|ABN68587.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 894
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV------YRDIWLGERG- 124
L + L+ E EAQCA L + D S+DSD+F+FGA ++ +++ G G
Sbjct: 142 LKIDYLQSPGEGEAQCAFLQKFGIVDHVLSNDSDVFVFGATSILKNYSRFQEDLAGSPGK 201
Query: 125 ----------YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
+V M ++ G LI LA L G+DYS G G+G ++AC +
Sbjct: 202 GNAPSPTSKYWVTPISMSRVQNTTGLTLPRLILLASLRGNDYSTGGTGMGIKNACSL 258
>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
gi|74802123|sp|Q7Q323.2|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
Length = 383
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
EAK L +GVP +E EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLRLMGVPYVEAPCEAEAQCAALVRAGKVYATATEDMDALTFGSNILLRHLTFSEA 199
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+ V + + + + ++ I L +LLG DY +RG+GP+ A +++
Sbjct: 200 RKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDYCDTIRGIGPKKAIELINK------- 252
Query: 182 QRIASEGLSFVKRAKNSKKEGWSF 205
R + L + R K EGW++
Sbjct: 253 HRSIEKILEHLDRQKYIVPEGWNY 276
>gi|189198980|ref|XP_001935827.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982926|gb|EDU48414.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 782
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG------- 124
LGVP E EAEA+CA L + + D +S DSD +FG + D + +
Sbjct: 114 LGVPYHEAPGEAEAECARLQILGIVDAVWSQDSDALMFGCTFLLNDWRVAKEDSNKDRSK 173
Query: 125 --------YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
Y +++ G R ++ A+L+G DY ++G+ G GP A Q VK
Sbjct: 174 ENTKKSGKYARVIRTNELRELHGLDREGMVLFAMLVGGDYDTKGLPGCGPSMAMQAVK 231
>gi|402468038|gb|EJW03248.1| hypothetical protein EDEG_00228 [Edhazardia aedis USNM 41457]
Length = 362
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY--VVCY 129
+ VP + EAEA A L ++ + D + D D FGA + R++ E +V Y
Sbjct: 149 MKVPYVVAPSEAEAYAAYLCIKGVVDAVATEDMDALTFGAPILLRNLNAAENKKLPIVEY 208
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVVLQRIASEG 188
+ +I ++L N I + ++LG DY + +RG GP+ A +++ D +L++ +
Sbjct: 209 NLKEILKELKINHNQFIDVCIMLGCDYVKPLRGFGPKRAYEMILKHKDIETILEKEKIKS 268
Query: 189 LSFVKRAKNSKKEG-WSF 205
L K +S+ + W+F
Sbjct: 269 LESTKNENSSEADDIWNF 286
>gi|149246113|ref|XP_001527526.1| hypothetical protein LELG_00046 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447480|gb|EDK41868.1| hypothetical protein LELG_00046 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 635
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 46 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 105
K+++ RN E + + + L L+ + C + E EAQCA + D S+D D
Sbjct: 112 KVANNERNFSEEIPIVEEIKELLRLNSILYC-QAPGEGEAQCAHFQRLGVVDFVMSNDVD 170
Query: 106 IFLFGARTVYR-------DIWLG---------ERGYVVCYEMDDIERKLGFGRNSLITLA 149
+FGA + R DI L R YV EMD +E GF R+ L+ LA
Sbjct: 171 TLVFGATKMLRNYSRFLEDIGLSPLKKQATLKTRYYVTPIEMDKVEAVTGFSRSRLVFLA 230
Query: 150 LLLGSDYSQGVRGLGPESA 168
L G DYS GV+ +G +A
Sbjct: 231 SLRGGDYSSGVQRIGITNA 249
>gi|343427426|emb|CBQ70953.1| probable DNA repair endonuclease rad2 [Sporisorium reilianum SRZ2]
Length = 374
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 18/238 (7%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEF 58
+ Y + +G+ P +K ++R E +D +++KM L R
Sbjct: 76 IDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQEEEQKDVADVEKMDQLARRQVRPT 135
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+E + L +G+PC+ EAEAQCA L S D D FG + + +
Sbjct: 136 RQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHL 195
Query: 119 WLGERGYVVCYEMD--DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK--S 174
E+ + +++D L I L +LLG DY ++G+GP++A ++++
Sbjct: 196 TASEQKKLPVHQVDLPKALEGLQMSMPQFIDLCILLGCDYLDPIKGIGPKTALKLIREHK 255
Query: 175 VGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 232
+NVV + + EG V+ E W F+ K N ++ G D L+ E P
Sbjct: 256 TLENVV-EHLKEEGKKSVQIP-----EHWPFQEARKIFE-NPDVQ-KGKDLDLKWEAP 305
>gi|242032391|ref|XP_002463590.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
gi|241917444|gb|EER90588.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
Length = 477
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY----VV 127
+GVP +E EAEAQCA L S D D FGAR R L + GY V
Sbjct: 225 MGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDSLTFGARRFLRH--LTDLGYKKSPVT 282
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASE 187
+++ + +LG + I L +L G DY + ++G+G + A ++++ G E
Sbjct: 283 EFDVSKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHG-------CIEE 335
Query: 188 GLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY-SNPKCY 246
L + + + S E W ++ + +L +E NV+ +P ++ + + S +
Sbjct: 336 VLQNLNQTRFSVPEDWPYQ---EVRTLFKEPNVSAGISDFTWTSPDTEGLMGFLSTENSF 392
Query: 247 SAD--SEAVHRVLA 258
S D ++AV ++ A
Sbjct: 393 SPDRVTKAVEKIKA 406
>gi|407408222|gb|EKF31745.1| DNA repair protein RAD2, putative [Trypanosoma cruzi marinkellei]
Length = 734
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EA+AQCA L+ + L D FS DSD+ + GA V R + R YVV Y
Sbjct: 460 GIPFVLSPHEADAQCAFLSQQRLVDAVFSEDSDVIVHGATVVLRGFFSKNR-YVVVYRQS 518
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
D+ G ++ L+ LALLLG DY++GV G+ A +I+ +
Sbjct: 519 DLA-MCGVDKDVLVALALLLGCDYAEGVDGVSLLEALRIIAA 559
>gi|395852526|ref|XP_003798789.1| PREDICTED: flap endonuclease 1 [Otolemur garnettii]
Length = 380
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + ++ I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|429848013|gb|ELA23547.1| flap structure-specific endonuclease [Colletotrichum
gloeosporioides Nara gc5]
Length = 542
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 30/203 (14%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-- 122
AK L G P + EAEA+CALL + + D S D D +FG R+ W E
Sbjct: 103 AKRLIRLFGFPVHDAPGEAEAECALLQQQGIVDAVLSEDVDTIMFGCTRTLRN-WSSEGI 161
Query: 123 RG-----YVVCYEMDD-IERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS- 174
RG +V Y++D + G R ++ +AL+ G DY +GV G G + AC+ K+
Sbjct: 162 RGSKTPTHVNLYDVDVLLSAGTGLDREGMVLVALMSGGDYIPEGVPGCGVKLACEAAKAG 221
Query: 175 VGDNVVLQRI-----ASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 229
G ++ +I E +F+K + + G+ F+ +K ++ E
Sbjct: 222 FGKSLCRLKIDEPVQFEEWRTFLKHQLRTNECGF-FRTKHKALAIPDEF----------- 269
Query: 230 ETPFSQVIDAYSNPKCYSADSEA 252
P QV+ Y++P +A++ A
Sbjct: 270 --PSRQVLRHYTHPVVSNAETIA 290
>gi|333986804|ref|YP_004519411.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
gi|333824948|gb|AEG17610.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
Length = 328
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALL--NLESLCDGCFSSDSDIFLFGARTVYR 116
S +I+ +K L +G+P ++ + E EAQ + + ++ C G S D D LFGA + +
Sbjct: 129 SDVIEGSKKLLSLMGIPHIQAMGEGEAQASYMVEKGDAWCVG--SQDYDCVLFGATRMVK 186
Query: 117 DIWL-GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV 175
++ + G + + E+ + +L R LI +A+L G+D+++GV+G+G + ++VK
Sbjct: 187 NLTITGGKANLELIELKKVLERLEITREQLIDVAILAGTDFNEGVKGIGAKKGLKLVKEH 246
Query: 176 GD 177
GD
Sbjct: 247 GD 248
>gi|359415965|ref|ZP_09208345.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
gi|358033683|gb|EHK02208.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 251
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW- 119
MI+E+K L ++G+P ++ E EAQ A ++ E S D D LFGA + R++
Sbjct: 131 MIEESKELLDAMGIPYIQASSEGEAQAAFMSSEGDVYAVGSQDWDCMLFGADRMVRNLTS 190
Query: 120 -------LGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
G+R V E++ + +L R L+ L +++G+D++ G+ G+GP+ A +
Sbjct: 191 RKTRKTSSGKRKEVKQQRIELEKVLEELDLSREQLVMLGMVMGTDFNDGIHGIGPKKAWR 250
>gi|171186427|ref|YP_001795346.1| flap endonuclease-1 [Pyrobaculum neutrophilum V24Sta]
gi|226700955|sp|B1YC46.1|FEN_THENV RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170935639|gb|ACB40900.1| XPG I domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 349
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++AK L +GVP ++ E EAQ A + C S D D LFG+ + R++ +
Sbjct: 135 MVEDAKRLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNLAV 194
Query: 121 GER---------GYVVCYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPESAC 169
+ E+D + + L GR LI +A+LLG+DY+ GV G+GP+ A
Sbjct: 195 SPKRRSGEEVVEVSPEVVELDSVLKALKLKGREQLIDVAILLGTDYNPDGVPGVGPQKAL 254
Query: 170 QIVKSVGDNVVLQRIASEGLSF 191
++V G + G+SF
Sbjct: 255 KLVLEFGSLEKMLDTVLRGVSF 276
>gi|336477791|ref|YP_004616932.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
gi|335931172|gb|AEH61713.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
Length = 337
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 12/141 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S +I+ +K L +G+P ++ E EAQ A + + S D D LFGA V R+I
Sbjct: 129 SYVIESSKTLLSIMGIPVVQAPCEGEAQAAHMVKSGDANYVASQDYDSLLFGAPFVIRNI 188
Query: 119 WL-------GERGYV-VCYEMDDIERKLG---FGRNSLITLALLLGSDYSQGVRGLGPES 167
+ G+ YV V E+ D+E LG L+ +AL +G+DY+ G+ +G +
Sbjct: 189 AITGKRKLPGKDAYVDVKPEVIDLEHSLGQMGITHPQLVDIALCVGTDYNNGLENIGQKR 248
Query: 168 ACQIVKSVGD-NVVLQRIASE 187
A ++VK GD VL+++ E
Sbjct: 249 ALELVKKHGDIESVLRKLGKE 269
>gi|347838150|emb|CCD52722.1| hypothetical protein [Botryotinia fuckeliana]
Length = 599
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 45/258 (17%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR--------- 116
K + SLGV E +EAEA+CA L + D ++ DSD F+FG ++ R
Sbjct: 117 KKMATSLGVIWHEAPDEAEAECAALQSRGVVDAIWTEDSDAFMFGCTSLIRFCHVKKPKV 176
Query: 117 ------DIWLGER---------GYVVCYEMDDIERKL-GFGRNSLITLALLLGSDYSQGV 160
W+ E ++ Y D I+ + G R+ L+ A+L G DYS+
Sbjct: 177 KRPGNNQDWVNESDETRREVDLDNIIIYRADKIQEQFPGLTRDGLVLFAVLKGGDYSKDG 236
Query: 161 RGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEE---SLNQE 217
+ L + C G ++ LQ IA+ F K N +S N E S+N+
Sbjct: 237 KSL---TNC------GASLALQ-IATAKEGFGKDLCNVSHADFSIWRNRLREHLTSINKR 286
Query: 218 INVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQW 277
I+V P +++ Y+ P S + F L + A F +
Sbjct: 287 IDVPDN-------FPDPRIVGLYNKPLVSSEKITSDIGKFWNPSFDEMELQRFIAPIFNF 339
Query: 278 PPEKTDEYILPKIAERDL 295
+ +YI+P + R L
Sbjct: 340 WVTEYIKYIIPILLVRSL 357
>gi|119719220|ref|YP_919715.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|166973708|sp|A1RWY2.1|FEN_THEPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119524340|gb|ABL77712.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 346
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M+ +AK L +GVP +E E EAQ A + + S D D LFG+ + R++
Sbjct: 131 AAMVHDAKLLLRYMGVPYVEAPSEGEAQAAYMVKKGDAWASGSQDFDSLLFGSPRLVRNL 190
Query: 119 WL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R YV E++++ R G L+ + +L+G+DY+ +G RG+G +
Sbjct: 191 AITGKRKLPRKDVYVEVKPEIVELEELLRVHGITHQQLVVIGILVGTDYAPEGARGIGVK 250
Query: 167 SACQIVKSVGD 177
A ++VK + D
Sbjct: 251 KALKLVKELKD 261
>gi|294496492|ref|YP_003542985.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
gi|292667491|gb|ADE37340.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
Length = 339
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 11/129 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ +++++ L +G+PC++ E EAQ A + + D S D D LFGA V R++
Sbjct: 129 ALIVEDSMQLLDYMGIPCVQAPSEGEAQAAYMVNKGDADYSASQDYDSLLFGAPRVIRNL 188
Query: 119 WL-------GERGYV-VCYEMDDIERK---LGFGRNSLITLALLLGSDYSQGVRGLGPES 167
+ G+ Y+ V E D+ + L R LI +AL +G+DY++G+ +GP++
Sbjct: 189 TITGKRKLPGKNVYIDVEPESIDLMQNIKLLDIDRRQLIGIALCVGTDYNKGLEKVGPKT 248
Query: 168 ACQIVKSVG 176
A +++K G
Sbjct: 249 ALKLIKQYG 257
>gi|71421804|ref|XP_811914.1| DNA repair protein RAD2 [Trypanosoma cruzi strain CL Brener]
gi|70876631|gb|EAN90063.1| DNA repair protein RAD2, putative [Trypanosoma cruzi]
Length = 744
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P + EA+AQCA L+ + L D FS DSD+ + GA V R + R YVV Y
Sbjct: 470 GIPFVLSPHEADAQCAFLSQQRLVDAVFSEDSDVIVHGADVVLRGFFSKNR-YVVVYRQS 528
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
D+ G ++ L+ LALLLG DY++GV G+ A +I+ +
Sbjct: 529 DLA-MCGVDKDVLVALALLLGCDYAEGVDGVSLLEALRIITA 569
>gi|83286314|ref|XP_730108.1| Flap endonuclease-1 [Plasmodium yoelii yoelii 17XNL]
gi|74882336|sp|Q7RME3.1|FEN1_PLAYO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|23489735|gb|EAA21673.1| flap endonuclease-1-related [Plasmodium yoelii yoelii]
Length = 480
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI----- 118
EAK L +G+P +E EAEAQCA L + + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATATEDADALVFGTKILIRNLNANAS 201
Query: 119 -------WLGERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+RGY++ ++ + + L + I +L G DY ++G+G ++A
Sbjct: 202 SNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFCILCGCDYCDTIKGIGSKTAYN 261
Query: 171 IVK 173
++K
Sbjct: 262 LIK 264
>gi|123478601|ref|XP_001322462.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121905309|gb|EAY10239.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 651
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 9/120 (7%)
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
I+ K L + VP + EE+ A+CA L LE + D S D++ FLFG++ + R+I+L
Sbjct: 273 IRAVKGLLDVMDVPYIIAPEESTAECARLELEGIVDATASDDNNAFLFGSKILIRNIFL- 331
Query: 122 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR----GLGPESACQIVKSVGD 177
R + + + ++ G R L+ LA+++ DY+ ++ +GP +I+ D
Sbjct: 332 -RPHSITLKSLEV---YGMTRKRLLQLAMMIDGDYNDDIKKRLFTVGPIRGLKILSLFPD 387
>gi|449283444|gb|EMC90086.1| Flap endonuclease 1 [Columba livia]
Length = 382
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P LE EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKKLLTLMGIPYLEAPGEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASET 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + ++ I + LG + L +LLG DY + +RG+GP+ A +++K
Sbjct: 200 KKLPIQEFHLNRILQDLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIK 251
>gi|16758170|ref|NP_445882.1| flap endonuclease 1 [Rattus norvegicus]
gi|8896169|gb|AAF81265.1|AF281018_1 flag structure-specific endonuclease [Rattus norvegicus]
Length = 380
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + VRG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVRGIGPKRAVDLIQ 251
>gi|413932542|gb|AFW67093.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 294
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY----VV 127
+GVP +E EAEAQCA L S D D FGAR R L + GY V
Sbjct: 149 MGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDTLTFGARRFLR--HLTDLGYKKSPVT 206
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+++ + +LG + I L +L G DY + +RG+G + A ++++ G
Sbjct: 207 EFDVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHG 255
>gi|118405170|ref|NP_001072959.1| flap endonuclease 1 [Gallus gallus]
gi|82082625|sp|Q5ZLN4.1|FEN1_CHICK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53129083|emb|CAG31359.1| hypothetical protein RCJMB04_5g12 [Gallus gallus]
Length = 381
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K +R SE + ++ N++K S + + + E
Sbjct: 85 FDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANIEKFSKRLVKVTQQHT---DEC 141
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K L + +G+P +E EAEA CA L + D D FG+ + R + E
Sbjct: 142 KKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKK 201
Query: 126 VVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + ++ + + LG + L +LLG DY + +RG+GP+ A +++K
Sbjct: 202 LPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIK 251
>gi|451851921|gb|EMD65219.1| hypothetical protein COCSADRAFT_199395 [Cochliobolus sativus
ND90Pr]
Length = 777
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER-------- 123
LGVP E EAEA+CA + + + D +S DSD +FG + D + +
Sbjct: 122 LGVPYHEAPGEAEAECARMQILDIVDAVWSQDSDCLMFGCTLWFHDHRVAKNEGATDRSK 181
Query: 124 -------GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
Y D++ + R L+ A+L+G DY QG+ GP A Q+VK
Sbjct: 182 ENTKKNGKYASVVRAIDMKERYNLDREGLVLFAMLVGGDYDQQGLPQCGPGIALQVVK 239
>gi|57099749|ref|XP_533271.1| PREDICTED: flap endonuclease 1 isoform 1 [Canis lupus familiaris]
Length = 380
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + ++ I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|392585015|gb|EIW74356.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 285
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 42/251 (16%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE---RGYVVCYEMDDIERKL 138
EAEA+ A ++ +L DG ++DSD+ LFGA+ V R++ + R + V ++ RK
Sbjct: 41 EAEAELAAMSCHNLLDGVLTTDSDVILFGAKHVIRELPESDGNKRSHQVEIFTEESIRKS 100
Query: 139 GFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKS-VGDNVVLQRIASEGLSFVKRAK 196
G+ + L+ +ALL G+DY GV+G G + A Q+ K +G+ +V F++
Sbjct: 101 GWDCHRLLLVALLSGADYDMSGVQGCGIKVASQLAKGDLGEKLVHAFTGCPAPQFLRFCV 160
Query: 197 NSKKEGWSFKCNNKEESLNQE--------------INVNG------TDHSLQRETPFSQV 236
+K+ N + +L ++ ++V G T HSL +TP +
Sbjct: 161 EWRKDLRDMLRENAKGALARKHGNIADNVPNTFPSLSVLGNYLCPVTSHSLSLDTP--RD 218
Query: 237 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI-AERDL 295
I +P+ D +L + +F W P K +YI I A +
Sbjct: 219 IGGLRSPQSLQPDV--------------TKLTSLFIHYFNWTPAKVQKYIHDNIWAGIYM 264
Query: 296 RRFANLRANTL 306
R +R N +
Sbjct: 265 RAIFRVRHNIV 275
>gi|452206818|ref|YP_007486940.1| flap endonuclease Fen1 [Natronomonas moolapensis 8.8.11]
gi|452082918|emb|CCQ36195.1| flap endonuclease Fen1 [Natronomonas moolapensis 8.8.11]
Length = 327
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ A + D S D D L GA R L +G C +
Sbjct: 145 LDVPVVEAPAEGEAQAAYMARYGDVDYAGSEDYDTLLLGAPYTLRG--LTSKGDPECMDF 202
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
+ LG L+ A+L+G+D+++G+ G+GP++A ++++ GD
Sbjct: 203 ERTLEDLGLTWEELVDAAILMGTDFNEGIDGIGPKTAVKLLREHGD 248
>gi|70942151|ref|XP_741275.1| flap exonuclease [Plasmodium chabaudi chabaudi]
gi|74978262|sp|Q4XXP8.1|FEN1_PLACH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56519555|emb|CAH78313.1| flap exonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 479
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI----- 118
EAK L +G+P +E EAEAQCA L + + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPVIESPCEAEAQCAFLTKYDMAHATATEDADALVFGTKILIRNLNANAS 201
Query: 119 -------WLGERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+RGY++ ++ + + L + I +L G DY ++G+G ++A
Sbjct: 202 SNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFCILCGCDYCDTIKGIGSKTAYN 261
Query: 171 IVK 173
++K
Sbjct: 262 LIK 264
>gi|412993680|emb|CCO14191.1| predicted protein [Bathycoccus prasinos]
Length = 390
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GERGYVVCY 129
LGVP E EAEA CA + L G + D D F + R++ ++ + Y
Sbjct: 149 LGVPVFEAPCEAEATCAAMCKAGLVHGAATEDMDTLTFACPRLIRNLMAPASQKKDIAEY 208
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ D + + L + I L +L G DY+ +RG+GP +A Q+++
Sbjct: 209 DFDKVLKGLDLDYDQFIDLCILCGCDYTDSIRGIGPVTALQLIR 252
>gi|349579452|dbj|GAA24614.1| K7_Rad27p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 382
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 29 RRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA 88
RR+ + ++ + L+KM RR + + K LGL +G+P + EAEAQCA
Sbjct: 104 RRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGL-MGIPYIIAPTEAEAQCA 162
Query: 89 LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLI 146
L + S D D + + R + E +E+D + R L +
Sbjct: 163 ELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFV 222
Query: 147 TLALLLGSDYSQGVRGLGPESACQIVKSVG 176
L ++LG DY + +RG+GP +A +++K+ G
Sbjct: 223 DLCIMLGCDYCESIRGVGPVTALKLIKTHG 252
>gi|82617225|emb|CAI64131.1| DNA repair protein [uncultured archaeon]
gi|268322957|emb|CBH36545.1| flap structure-specific endonuclease [uncultured archaeon]
Length = 330
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ ++ +AK L +G+P ++ E EAQ A + + S D D LFGA R++
Sbjct: 128 ATIVADAKTLLTLMGIPYVQAPSEGEAQAAYMVQNGDAELVSSQDYDSLLFGAPITIRNL 187
Query: 119 WLG-ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
++ + E+ +E G R LI +A+L+G+D+++G++G+G + A +++K
Sbjct: 188 SAPRKKAKLELVELKALEDTQGIIREELIDIAILVGTDFNEGIKGVGVKRALKLIK 243
>gi|317374937|sp|C5WU23.2|FEN12_SORBI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
Length = 428
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY----VV 127
+GVP +E EAEAQCA L S D D FGAR R L + GY V
Sbjct: 176 MGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDSLTFGARRFLRH--LTDLGYKKSPVT 233
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASE 187
+++ + +LG + I L +L G DY + ++G+G + A ++++ G E
Sbjct: 234 EFDVSKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHG-------CIEE 286
Query: 188 GLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY-SNPKCY 246
L + + + S E W ++ + +L +E NV+ +P ++ + + S +
Sbjct: 287 VLQNLNQTRFSVPEDWPYQ---EVRTLFKEPNVSAGISDFTWTSPDTEGLMGFLSTENSF 343
Query: 247 SAD--SEAVHRVLA 258
S D ++AV ++ A
Sbjct: 344 SPDRVTKAVEKIKA 357
>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
Length = 381
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K +R SE + ++ N++K S + + + E
Sbjct: 85 FDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANIEKFSKRLVKVTQQHT---DEC 141
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K L + +G+P +E EAEA CA L + D D FG+ + R + E
Sbjct: 142 KKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKK 201
Query: 126 VVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + ++ + + LG + L +LLG DY + +RG+GP+ A +++K
Sbjct: 202 LPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIRGIGPKRAVELIK 251
>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
gi|317374895|sp|B4QIG6.1|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
Length = 385
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
DD ++K + + E + KEAK L +GVP ++ EAEAQCA L
Sbjct: 119 DDAGIEKFNRRLVRVTKEHA---KEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYAT 175
Query: 100 FSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
+ D D FG+ + R + E + V + D + L I L +LLG DY
Sbjct: 176 ATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYC 235
Query: 158 QGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFK 206
+ ++G+GP+ A +++ + D +L + S +K + E W++K
Sbjct: 236 ESIKGIGPKRAIELINTYRDIETILDNLDS--------SKYTVPENWNYK 277
>gi|384250267|gb|EIE23747.1| hypothetical protein COCSUDRAFT_47423 [Coccomyxa subellipsoidea
C-169]
Length = 959
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 3 SYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMI 62
+YL + + L+G P KL T + R S ++ N S F +
Sbjct: 79 NYLRFGCTPVGVLDGDAPEQKLETLQARFFS---------RFNRAGGGGGN--SHFVHLC 127
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
L ++G+ ++ EAEA CA L+ D C + DSD LFGA+T+++ I
Sbjct: 128 SLTAQLFKAMGLWVVQAPGEAEAVCAALDRAGHVDACVTKDSDALLFGAQTLFQTIKPVT 187
Query: 123 RGYVVC----YEMDDIERKLGF---GRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKS 174
C M D+ LG G +L +ALL G DY G G+G + A +VK
Sbjct: 188 STPNECKLSSVAMRDVRAYLGINEGGELALTAIALLTGGDYHMGGAEGVGQKQALAVVKH 247
Query: 175 V 175
+
Sbjct: 248 L 248
>gi|317376169|sp|B3LQY3.1|FEN1_YEAS1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190409721|gb|EDV12986.1| structure-specific endonuclease RAD27 [Saccharomyces cerevisiae
RM11-1a]
Length = 382
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 29 RRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA 88
RR+ + ++ + L+KM RR + + K LGL +G+P + EAEAQCA
Sbjct: 104 RRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGL-MGIPYIIAPTEAEAQCA 162
Query: 89 LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLI 146
L + S D D + + R + E +E+D + R L +
Sbjct: 163 ELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSETKKEPIHEIDTELVLRGLDLTIEQFV 222
Query: 147 TLALLLGSDYSQGVRGLGPESACQIVKSVG 176
L ++LG DY + +RG+GP +A +++K+ G
Sbjct: 223 DLCIMLGCDYCESIRGVGPVTALKLIKTHG 252
>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
gi|317374889|sp|B3NP61.1|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
Length = 387
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
DD ++K + + E + KEAK L +GVP ++ EAEAQCA L
Sbjct: 119 DDAGIEKFNRRLVRVTKEHA---KEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYAT 175
Query: 100 FSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
+ D D FG+ + R + E + V + D + L I L +LLG DY
Sbjct: 176 ATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDYC 235
Query: 158 QGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFK 206
+ ++G+GP+ A +++ + D +L + S +K + E W++K
Sbjct: 236 ESIKGIGPKRAIELINNYRDIETILDNLDS--------SKYTVPENWNYK 277
>gi|393229980|gb|EJD37593.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 42/235 (17%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW----------- 119
S G + EAEA A LN L D ++ D D FLFGA TV R+
Sbjct: 117 SFGFEWRKAPGEAEADLAWLNSMGLIDAVWTDDGDAFLFGATTVMRNPGKNLSSNIRSPA 176
Query: 120 LGERG-----YVVCYEMDDI--ERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
L G V + +D+ + RN LI +ALL G DY +G+ G+G A +
Sbjct: 177 LTTEGKQNENQVHVFHAEDLIDNENIRLDRNGLILVALLRGGDYHEGIDGVGMTIAHALA 236
Query: 173 KSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH------- 225
+ A G + ++ E + + L QE+ + H
Sbjct: 237 R-----------AGFGDTLAAAMQSPDVETLAGMISQWRSELVQELRTDSQGHLGRRHPA 285
Query: 226 ---SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQW 277
S+ + P V +AY+NP + + A++ +L L Q C + F+W
Sbjct: 286 VAASIPLDFPDLDVYNAYANPVVSNLGTVAINWYRLPNL---TGLAQACERHFEW 337
>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
gi|122102839|sp|Q7K7A9.1|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
Length = 385
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 40 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 99
DD ++K + + E + KEAK L +GVP ++ EAEAQCA L
Sbjct: 119 DDAGIEKFNRRLVRVTKEHA---KEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYAT 175
Query: 100 FSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 157
+ D D FG+ + R + E + V + D + L I L +LLG DY
Sbjct: 176 ATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYC 235
Query: 158 QGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFK 206
+ ++G+GP+ A +++ + D +L + S +K + E W++K
Sbjct: 236 ESIKGIGPKRAIELINTYRDIETILDNLDS--------SKYTVPENWNYK 277
>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
gi|317374877|sp|C3ZBT0.1|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
Length = 380
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
E K L +G+P ++ EAEAQCA L + + D D+ FG + R + E
Sbjct: 140 ECKKLLTLMGIPYVDAPCEAEAQCAELAKKGKVYAAGTEDMDVLTFGTNIMLRHLTFSEA 199
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+ + Y D + +L ++ I L +LLG DY +RG+GP+ A ++++
Sbjct: 200 RKMPIKEYYYDRLLAELDLTQDQFIDLCILLGCDYCDSIRGIGPKRAIELIRQY------ 253
Query: 182 QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH-SLQRETPFSQVIDAY 240
+ E L + K E W + ++ L +E V D L+ P + + Y
Sbjct: 254 -KSIEEILKHIDTKKFPVPEDWPY---DQARKLFKEPEVTPADQVELKWVDPDEEGLVQY 309
Query: 241 -SNPKCYSAD 249
SN K +S D
Sbjct: 310 MSNEKGFSED 319
>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
gi|317374894|sp|B4HTA1.1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
Length = 385
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
KEAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 139 KEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSE 198
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NV 179
+ V + D + L I L +LLG DY + ++G+GP+ A +++ + D
Sbjct: 199 ARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIET 258
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFK 206
+L + S +K + E W++K
Sbjct: 259 ILDNLDS--------SKYTVPENWNYK 277
>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
Length = 380
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S +R + E + D +DK S + S + KE
Sbjct: 85 FDGKPPQMKSSELEKRADRRQEAQKSLEKAEEAGDATGIDKFSKRLVKVTSTHTTECKEL 144
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
L +GVP +E EAEAQCA + + D D FG+ + R + E +
Sbjct: 145 LKL---MGVPFVEAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSPVLLRHMTFSEARK 201
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ +++D + + R+ I L +LLG DY ++G+GP+ A ++++
Sbjct: 202 MPIQEFQLDSVLETMEMSRDEFIDLCILLGCDYCNSIKGVGPKRAIELMR 251
>gi|392585979|gb|EIW75317.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 331
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 47/232 (20%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-----GERGYVVCYEMDDIER 136
EAEA+ A +N + DG +SDSD+ LFGA + RD+ + + V ++ R
Sbjct: 88 EAEAELAAMNRMNHVDGVLTSDSDVVLFGAGCIIRDVLRLIDGDDNKKHQVEIHTEESIR 147
Query: 137 KLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS-VGDNVVLQRIASEGLSFVKRA 195
G+ L+ +ALL G+DY G G+G A Q+ KS +G+ +V + F++
Sbjct: 148 ASGWNSRRLLLVALLSGADYDMGC-GIG--VASQLAKSELGEKLVQAYMGCPAPEFLRFC 204
Query: 196 KNSKKEGWSFKCNNKEESLNQE--------------INVNG------TDHSLQRETPFSQ 235
+ +++ NN E +L ++ + V G T HSL + P +
Sbjct: 205 TDWRRDLRDMLRNNTEGTLTRKHGGIADNVRNTFPSLTVLGNYLCPVTSHSLTLDGP--R 262
Query: 236 VIDAYSNPKCYSAD-SEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYI 286
I +P+ + +EAV LF+H +F WP K ++YI
Sbjct: 263 EIGGLRSPQSRQPNVTEAV------SLFKH---------YFNWPSAKVEKYI 299
>gi|6322736|ref|NP_012809.1| Rad27p [Saccharomyces cerevisiae S288c]
gi|140964|sp|P26793.1|FEN1_YEAST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1; AltName: Full=RAD2
homolog nuclease 1; Short=RTH1 nuclease; AltName:
Full=Structure-specific endonuclease RAD27
gi|317376170|sp|C7GVJ8.1|FEN1_YEAS2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376171|sp|A6ZZK4.1|FEN1_YEAS7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376172|sp|C8ZC62.1|FEN1_YEAS8 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|248392|gb|AAB21998.1| RAD2 homolog [Saccharomyces cerevisiae]
gi|486190|emb|CAA81953.1| RAD27 [Saccharomyces cerevisiae]
gi|151941690|gb|EDN60052.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
gi|256269907|gb|EEU05165.1| Rad27p [Saccharomyces cerevisiae JAY291]
gi|259147728|emb|CAY80978.1| Rad27p [Saccharomyces cerevisiae EC1118]
gi|285813148|tpg|DAA09045.1| TPA: Rad27p [Saccharomyces cerevisiae S288c]
gi|323347750|gb|EGA82014.1| Rad27p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764563|gb|EHN06085.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298324|gb|EIW09422.1| Rad27p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 382
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 29 RRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA 88
RR+ + ++ + L+KM RR + + K LGL +G+P + EAEAQCA
Sbjct: 104 RRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGL-MGIPYIIAPTEAEAQCA 162
Query: 89 LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLI 146
L + S D D + + R + E +E+D + R L +
Sbjct: 163 ELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFV 222
Query: 147 TLALLLGSDYSQGVRGLGPESACQIVKSVG 176
L ++LG DY + +RG+GP +A +++K+ G
Sbjct: 223 DLCIMLGCDYCESIRGVGPVTALKLIKTHG 252
>gi|395325520|gb|EJF57941.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 606
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 49 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVE--EAEAQCALLNLESLCDGCFSSDSDI 106
S +R + E++ + ++G+PC+E + E EA A L + D S D D+
Sbjct: 390 SYQRRTYAPTQSTYSESRQILRAMGIPCVESISAFEGEALAASLVVNGYADYVASEDMDV 449
Query: 107 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 166
++ A + R+I + V + D++ LG + + ALLLG+D+SQ ++ +GP
Sbjct: 450 LVYDA-PLLRNIASSQDPLFVVHP-DEVRAALGLDQTRFVDFALLLGTDFSQRIKNIGPA 507
Query: 167 SACQIVKSVG 176
A ++ G
Sbjct: 508 RALAFMRQHG 517
>gi|452840124|gb|EME42062.1| hypothetical protein DOTSEDRAFT_174868 [Dothistroma septosporum
NZE10]
Length = 393
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 23/225 (10%)
Query: 12 LRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKN---------LDKMSSLRRNMGSEFSCMI 62
L +G+ P +K +R SE D + ++K S + E +
Sbjct: 82 LYVFDGAPPKLKSGELAKRFQRKSEAQADHEEAKETGTAEEVEKFSRRTVRVTREHNA-- 139
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
EA+ L +GVP + EAEAQCA+L S D D F + + R + E
Sbjct: 140 -EAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDSPVLLRHLTFSE 198
Query: 123 RGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ E +D + L + I L +LLG DY V+G+GP+ A +++K +
Sbjct: 199 QRKEPIQEIFLDRVLEGLEMDQKQFIDLCILLGCDYLDPVKGIGPKVALELIKK---HKT 255
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 225
L+ + E K +K + E W F +L E +V+ DH
Sbjct: 256 LENVVEE---IKKGSKYTLPEDWPFA---DARALFLEPDVHKADH 294
>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
gi|317374914|sp|C5FZT5.1|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
Length = 394
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
E K L +G+P ++ EAEAQCA+L E G S D D F A + R + E
Sbjct: 139 ECKRLLKLMGIPYIDAPTEAEAQCAVLAKEGKVFGAASEDMDTLCFAAPVLLRHLTFSEQ 198
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+ ++ +D + LG + L +LLG DY + +GP +A ++++ G
Sbjct: 199 RKEPILEIHLDKVLEGLGMEMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHG 253
>gi|448729889|ref|ZP_21712201.1| flap endonuclease-1 [Halococcus saccharolyticus DSM 5350]
gi|445794210|gb|EMA44763.1| flap endonuclease-1 [Halococcus saccharolyticus DSM 5350]
Length = 325
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 68 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV 127
LGL L VP +E E EAQ A + D S D D LFGA R L +G
Sbjct: 141 LGL-LDVPVVEAPAEGEAQAAHMARSGTVDYAGSEDYDTLLFGAPRTLRG--LTSKGDPE 197
Query: 128 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
C E + + L+ + +L G+D+++GV G+GP++A ++V+ GD
Sbjct: 198 CMEFEATLTEHDLTWEQLVDVGILCGTDFNEGVSGVGPKTAVKLVREHGD 247
>gi|448602383|ref|ZP_21656439.1| flap endonuclease-1 [Haloferax sulfurifontis ATCC BAA-897]
gi|445747898|gb|ELZ99352.1| flap endonuclease-1 [Haloferax sulfurifontis ATCC BAA-897]
Length = 326
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L G+D+++G+ G+GP++A ++V GD
Sbjct: 202 DATLAKHDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGD 247
>gi|397584929|gb|EJK53123.1| hypothetical protein THAOC_27498, partial [Thalassiosira oceanica]
Length = 252
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 93/229 (40%), Gaps = 47/229 (20%)
Query: 73 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 132
G+P +E EAEAQCA L L DG + DSDIF+FG + VY+ G R
Sbjct: 20 GIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYK----GHRA-------- 67
Query: 133 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFV 192
+ G G+ G DY+ GVRG+G + +++++ A++G+ V
Sbjct: 68 ----RAGPGQGQARRPRDAPGRDYTDGVRGVGIVNGMEVLRAFPP-------AADGVEGV 116
Query: 193 KRAKNSKKEGWSFKCNN--KEESLNQEINVNGTDHSLQ------RETPFSQVIDAYSNPK 244
S+ W + +++ E+ +G S + + P +I AY P
Sbjct: 117 H-GGLSRFRDWMDGIGDVLPDDATPPEVAFHGKHRSARARWAAPADFPSRGIITAYLRPA 175
Query: 245 CYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 288
++ + F AR L + CA W E+T + P
Sbjct: 176 VDTSRTR----------FTWARPDLDALQRFCADTLGWEREETARVVGP 214
>gi|294657807|ref|XP_460107.2| DEHA2E18524p [Debaryomyces hansenii CBS767]
gi|199432966|emb|CAG88374.2| DEHA2E18524p [Debaryomyces hansenii CBS767]
Length = 840
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-------------YVVC 128
EAEA+CA+L + D + D+D+F+FGA V R+ E+ YV
Sbjct: 153 EAEAECAMLQKFGVVDFVLTKDTDVFVFGATKVLRNFSRSEQDLSVSSTSNAVKDYYVTP 212
Query: 129 YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
+M + ++ G LI +A L G DYS G+ +G A +I
Sbjct: 213 VDMTKVAKETGLDYQRLILVATLRGGDYSNGMNNIGITRATKI 255
>gi|402222283|gb|EJU02350.1| PIN domain-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 636
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 71 SLGVPCLEG--VEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 128
++GVPC+E EAEA A L + L + S D+D+ ++ A + R++ + +
Sbjct: 426 AMGVPCIEAEYPYEAEALAASLVINGLANYVGSEDTDVLIYEA-PLLRNL-TNRQLPLAL 483
Query: 129 YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
D+ L R S + ALLLG+D++Q V+ LGP +A +++++ G
Sbjct: 484 ISGTDVRNALQLSRESFVDFALLLGTDFTQRVKNLGPHTAIKLIRTYG 531
>gi|380484575|emb|CCF39910.1| flap structure-specific endonuclease [Colletotrichum higginsianum]
Length = 698
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GE 122
AK + G P + EAEA+CALL + + D S D D +FG R+ W G
Sbjct: 56 AKRVTRLFGFPVHDAPGEAEAECALLQQKGIVDAVLSEDVDTIMFGCTRTLRN-WTAEGT 114
Query: 123 RG-----YVVCYEMDD-IERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
RG +V Y+++ + G R ++ +AL+ G DY +GV G G + AC+ K+
Sbjct: 115 RGSKTPTHVSLYDVNALLSTGTGLDREGMVLVALMSGGDYLPEGVPGCGVKLACEAAKA 173
>gi|448107610|ref|XP_004205405.1| Piso0_003651 [Millerozyma farinosa CBS 7064]
gi|448110596|ref|XP_004201669.1| Piso0_003651 [Millerozyma farinosa CBS 7064]
gi|359382460|emb|CCE81297.1| Piso0_003651 [Millerozyma farinosa CBS 7064]
gi|359383225|emb|CCE80532.1| Piso0_003651 [Millerozyma farinosa CBS 7064]
Length = 669
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S +I++ KA L + L+ EAEA+CA L + D + D+D+ +FGA V RD
Sbjct: 129 SSLIEDLKANLKRLDIDFLQAPGEAEAECASLQKFGVVDYVLTHDNDVLVFGATKVLRDF 188
Query: 119 WLGERG-----------YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
E YV ++IE + G LI +A + G DYS+G+ +G
Sbjct: 189 SKNEDARVKSPSSRNEYYVTPIYAENIENRAGIRYQDLIFIAAIRGGDYSKGLDNMGITR 248
Query: 168 ACQIVK 173
A ++ +
Sbjct: 249 AVKLAR 254
>gi|323332740|gb|EGA74145.1| Rad27p [Saccharomyces cerevisiae AWRI796]
Length = 370
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 29 RRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA 88
RR+ + ++ + L+KM RR + + K LGL +G+P + EAEAQCA
Sbjct: 92 RRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGL-MGIPYIIAPTEAEAQCA 150
Query: 89 LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLI 146
L + S D D + + R + E +E+D + R L +
Sbjct: 151 ELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFV 210
Query: 147 TLALLLGSDYSQGVRGLGPESACQIVKSVG 176
L ++LG DY + +RG+GP +A +++K+ G
Sbjct: 211 DLCIMLGCDYCESIRGVGPVTALKLIKTHG 240
>gi|241627391|ref|XP_002409855.1| endonuclease, putative [Ixodes scapularis]
gi|215503262|gb|EEC12756.1| endonuclease, putative [Ixodes scapularis]
Length = 384
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
+ LGL +GVP +E EAEAQCA L G + D D FG + R + E +
Sbjct: 141 RLLGL-MGVPYIEAPCEAEAQCAELVKGGKVYGTATEDMDGLTFGTNVLLRHMTYSEARK 199
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+ + ++ + L R+ I L +LLG DY + +RG+GP+ A +++K + +
Sbjct: 200 MPIKEFNLERVLSGLELNRDEFIDLCILLGCDYCESIRGIGPKRAIELIKQ--HKSIEKI 257
Query: 184 IASEGLSFVKRAKNSKKEGWSFK 206
I+S K + E W FK
Sbjct: 258 ISSIDTKACCDTKYTIPEDWPFK 280
>gi|396499081|ref|XP_003845386.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
gi|312221967|emb|CBY01907.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
Length = 423
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCY 129
+G+P + EAEAQCA+L S D D F + + R + E + ++
Sbjct: 176 MGIPFIVAPTEAEAQCAVLARGGKVYAAASEDMDTLTFNSPILLRHLTFSEQRKEPILEI 235
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVVLQRIASEG 188
+D + L R I L +LLG DY ++G+GP +A ++++ D V++ I S+
Sbjct: 236 HLDKVLEGLAMDRTQFIDLCILLGCDYLDPIKGIGPSTALKLIREHKDLEGVVKHIQSQ- 294
Query: 189 LSFVKRAKNSKKEGWSF 205
+ K + E W F
Sbjct: 295 ----PKGKLTIPEDWPF 307
>gi|194377686|dbj|BAG63206.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 104 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 163
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 164 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 215
>gi|150399374|ref|YP_001323141.1| flap endonuclease-1 [Methanococcus vannielii SB]
gi|150012077|gb|ABR54529.1| XPG I [Methanococcus vannielii SB]
Length = 324
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 39 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 98
++ NL+ M + I+ +K L +GVP + E EAQCA L
Sbjct: 109 KEQDNLENMQKYAKRANFLDKKTIENSKRLLELMGVPYINAPSEGEAQCAELVKSKNASF 168
Query: 99 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS- 157
S D D L+GA +V ++I + + E+ + +L LI +A+L+G+DY+
Sbjct: 169 VVSQDYDSILYGAESVVKNITSSNKSLELI-ELSKVLTELNVNLLELIDVAILIGTDYNP 227
Query: 158 QGVRGLGPESACQIVK 173
G++G+GP+ A ++VK
Sbjct: 228 GGIKGIGPKKAFEVVK 243
>gi|448612021|ref|ZP_21662451.1| flap endonuclease-1 [Haloferax mucosum ATCC BAA-1512]
gi|445742782|gb|ELZ94276.1| flap endonuclease-1 [Haloferax mucosum ATCC BAA-1512]
Length = 326
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMAHKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K LI +A+L G+D+++G+ G+GP++A + VK GD
Sbjct: 202 DATLAKHDISWEQLIDIAMLCGTDFNEGITGVGPKTAVKEVKKHGD 247
>gi|389848285|ref|YP_006350524.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|448618490|ref|ZP_21666727.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|388245591|gb|AFK20537.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|445746861|gb|ELZ98319.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
Length = 326
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L G+D+++G+ G+GP++A + VK GD
Sbjct: 202 DATLEKHDISWEQLVDIAMLCGTDFNEGITGVGPKTAVKEVKKHGD 247
>gi|116180814|ref|XP_001220256.1| hypothetical protein CHGG_01035 [Chaetomium globosum CBS 148.51]
gi|88185332|gb|EAQ92800.1| hypothetical protein CHGG_01035 [Chaetomium globosum CBS 148.51]
Length = 1765
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 98/265 (36%), Gaps = 36/265 (13%)
Query: 51 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 110
RR+ M+ E +AL G+P + EAEAQCA L +L DG + DSD FLFG
Sbjct: 817 RRDADEVTQVMVTECQALLTLFGIPYITAPMEAEAQCAELVHLNLVDGIVTDDSDTFLFG 876
Query: 111 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
VY++++ G N+ +G+ G+GP +A +
Sbjct: 877 GTRVYKNMFAG---------------------NNSSPSPTSSAPTTPKGLPGVGPVTALE 915
Query: 171 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
I+ L R + K +F K + T L
Sbjct: 916 ILSEFPGKNGLSEFRDWWQDIQNRGR-PKDADAAFPFRRKFR------KAHATKLFLPPG 968
Query: 231 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P V DAY +P D ++ + L Q W E+TDE ++P I
Sbjct: 969 FPNPAVADAYLHP-----DVDSNTEPFQWGVPDLDGLRQFLMNTIGWGQERTDEVLVPVI 1023
Query: 291 AERDLRRFANLRANT---LALGVDL 312
+ + R ++N ++GV +
Sbjct: 1024 RDMNKRDVEGTQSNITRFFSMGVGV 1048
>gi|326470331|gb|EGD94340.1| flap endonuclease [Trichophyton tonsurans CBS 112818]
Length = 376
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
+ LGL +G+P L+ EAEAQCA+L G S D D F A + R + E +
Sbjct: 124 RLLGL-MGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRK 182
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
++ +D + LG + L +LLG DY + +GP +A ++++ D+ L++
Sbjct: 183 EPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIR---DHGTLEK 239
Query: 184 IASEGLSFVKRAKNSKKEGWSF 205
+ E + + K E W +
Sbjct: 240 VV-EAIESDPKKKYVIPEDWPY 260
>gi|75057714|sp|Q58DH8.1|FEN1_BOVIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|61553325|gb|AAX46387.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61553832|gb|AAX46466.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61554710|gb|AAX46602.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|296471658|tpg|DAA13773.1| TPA: flap endonuclease 1 [Bos taurus]
Length = 380
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|18977786|ref|NP_579143.1| flap endonuclease-1 [Pyrococcus furiosus DSM 3638]
gi|397651906|ref|YP_006492487.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
gi|28380014|sp|O93634.1|FEN_PYRFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|6980604|pdb|1B43|A Chain A, Fen-1 From P. Furiosus
gi|6980605|pdb|1B43|B Chain B, Fen-1 From P. Furiosus
gi|4102602|gb|AAD01514.1| endo/exonuclease [Pyrococcus furiosus DSM 3638]
gi|18893531|gb|AAL81538.1| flap structure-specific endonuclease [Pyrococcus furiosus DSM 3638]
gi|393189497|gb|AFN04195.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
Length = 340
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 MLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G V E ++++ ++L R LI LA+L+G+DY+ G++G+G +
Sbjct: 190 ITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKK 249
Query: 168 ACQIVKSVGD 177
A +IV+ D
Sbjct: 250 ALEIVRHSKD 259
>gi|26345786|dbj|BAC36544.1| unnamed protein product [Mus musculus]
Length = 411
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|126465621|ref|YP_001040730.1| flap endonuclease-1 [Staphylothermus marinus F1]
gi|166973707|sp|A3DMG2.1|FEN_STAMF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126014444|gb|ABN69822.1| flap endonuclease 1 [Staphylothermus marinus F1]
Length = 350
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 12/126 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++AK L ++G+P ++ E EAQ A + + S D D LFG+ + R++ +
Sbjct: 135 MVQDAKKLLDAMGIPWIQAPAEGEAQAAYIVSKGDAWASASQDYDSLLFGSPRLIRNLTI 194
Query: 121 -GERGYV---VCYEMD-------DIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+R V E+ + KLG R LI +A+L+G+DY+ GV+G+GP+ A
Sbjct: 195 SGKRKLPRKNVYIEIKPEIIELKKLLEKLGLTREQLIYVAILIGTDYNPDGVKGIGPKKA 254
Query: 169 CQIVKS 174
Q+VK+
Sbjct: 255 LQLVKA 260
>gi|440901464|gb|ELR52399.1| Flap endonuclease 1 [Bos grunniens mutus]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|61365237|gb|AAX42675.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61365242|gb|AAX42676.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61369466|gb|AAX43341.1| flap structure-specific endonuclease 1 [synthetic construct]
Length = 381
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|393213357|gb|EJC98853.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 403
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K LGL +G+P + EAEAQCA L S D D F A +YR + E
Sbjct: 144 KLLGL-MGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILYRHLTFSEAKK 202
Query: 126 VVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
E++ + G N I L +LLG DY + ++G+GP+SA ++V+ GD
Sbjct: 203 QPISEINLQKALEGLEMNMSQFIDLCILLGCDYLEPIKGIGPKSALKLVRDYGD 256
>gi|51092043|gb|AAT94435.1| RE62451p [Drosophila melanogaster]
Length = 932
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 928
Query: 132 DDIE 135
+ IE
Sbjct: 929 EQIE 932
>gi|67524613|ref|XP_660368.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|74597180|sp|Q5B9L6.1|FEN1_EMENI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40744016|gb|EAA63198.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|259486319|tpe|CBF84062.1| TPA: 5' to 3' exonuclease, 5' flap endonuclease (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 395
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 9/190 (4%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P ++ EAEAQCA+L S D D F A + R + E+
Sbjct: 140 ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
E ++ LG RN I L +LLG DY + + +GP +A ++++ D+ L
Sbjct: 200 RKEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIPKVGPNTALKLIR---DHGTL 256
Query: 182 QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI-NVNGTDHSLQRETP-FSQVIDA 239
+++ E + + K E W ++ + +E LN ++ + N + + E P ++D
Sbjct: 257 EKVV-ESIEKDPKQKYVIPESWPYQ-DARELFLNPDVRDANDPECDFKWEAPDIEGLVDF 314
Query: 240 YSNPKCYSAD 249
K ++ D
Sbjct: 315 LVKDKGFNED 324
>gi|403255047|ref|XP_003920260.1| PREDICTED: flap endonuclease 1 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403255049|ref|XP_003920261.1| PREDICTED: flap endonuclease 1 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASES 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|292656986|ref|YP_003536883.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
gi|448293584|ref|ZP_21483689.1| flap endonuclease-1 [Haloferax volcanii DS2]
gi|291370541|gb|ADE02768.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
gi|445570445|gb|ELY25008.1| flap endonuclease-1 [Haloferax volcanii DS2]
Length = 326
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L G+D+++G+ G+GP++A ++V GD
Sbjct: 202 DATLDKHDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGD 247
>gi|403358237|gb|EJY78757.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 967
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 9/200 (4%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNL---DKMSSLRRNMGSEFSC---MIKEAKAL 68
+G P +K +R + + ++ KN M +R G M+++AK L
Sbjct: 90 FDGKPPDLKNRVLDQRKETKEKAVEEKKNRIEEGDMEGAKRMAGRSVKVTWDMMRDAKKL 149
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 128
+G P ++ EAEAQCA L L S D D FG + + R + ++ ++
Sbjct: 150 LRLMGCPVIDAPGEAEAQCAHLVKLGLAFATASEDMDSLTFGTKVLLRG-FNSKKEPIIQ 208
Query: 129 YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV--VLQRIAS 186
+++++ + I L +L G DY+ + G+GP A Q + G + V++++
Sbjct: 209 IDLEEVLEGFMMNHDQFIDLCILCGCDYTTSITGIGPIKAYQYLSEHGGIIENVIKKVEY 268
Query: 187 EGLSFVKRAKNSKKEGWSFK 206
E K+ K E + FK
Sbjct: 269 ENQKPWKKKKYHIPENFLFK 288
>gi|330689547|pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
gi|330689551|pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 139 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 198
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 199 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 250
>gi|255722695|ref|XP_002546282.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136771|gb|EER36324.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 689
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 77 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR-----------------DIW 119
++ E EAQCA L + D C S D D +FGA V R D
Sbjct: 138 VQAAGEGEAQCAYLQKLGIVDYCLSQDGDALVFGANKVLRNFSKYLEDIGRSPSKKSDAK 197
Query: 120 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
L + YV ++ IE++ G LI LA L G DYS GVR +G +A
Sbjct: 198 LKQTYYVTPVDIKVIEKETGLSVERLIFLASLRGGDYSAGVRKIGITNA 246
>gi|393217599|gb|EJD03088.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 546
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 63 KEAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+E+K + +LGVP +E G EAE + L L S D+D+ ++GA T+ R++
Sbjct: 332 EESKMMLEALGVPTIECNGPYEAEGLASSLVRHGLAHFVASEDTDVLVYGA-TLLRNM-T 389
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
G +V +++ R L R + + ALL+G+D+S +R +GP A + +
Sbjct: 390 SRHGAIVAISSEEVRRALRLSRAAFMDFALLIGTDFSSRLRNVGPVRALNFIST 443
>gi|170087736|ref|XP_001875091.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650291|gb|EDR14532.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 582
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 116/292 (39%), Gaps = 55/292 (18%)
Query: 70 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVC 128
LS G P + + EA+A+ A L+ E D S DSD+ + GA V R+ + V
Sbjct: 129 LSFGFPSIVALGEADAELAWLSKEGYIDAVASEDSDLIVLGAAVVLRNFLHEDNNEKVTV 188
Query: 129 YEMDDIERK--LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 186
Y + I + LGF + +ALL+G DY G+ G A + ++ + +L
Sbjct: 189 YRAEAIRKHAALGFTDTDFLVIALLVGGDYDGGLEWCGIRIATGLARAGLGHRLLH---- 244
Query: 187 EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH----------SLQRETPFSQV 236
GLS K N E W L++E+ N + H S+ + P +V
Sbjct: 245 -GLSQSKVVDNF-LEVW-------RNELHEELRTNDSGHLPSCQPALSNSIPSDFPQLKV 295
Query: 237 IDAYSNP---KCYSAD------SEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 287
I+ Y NP K D + + A+ F H + + F + I
Sbjct: 296 INLYQNPLSSKTNPTDLLGCSPNPILLANFAEENFCWGSTHGILSHF--------ETTIF 347
Query: 288 PKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRK--LQGKEC 337
P +A D+ R A DL L K P C G + R+ L+ ++C
Sbjct: 348 PGLALDDICRIAR--------ETDLGLAKRP--CQFIGEVLQRRVPLKARDC 389
>gi|4758356|ref|NP_004102.1| flap endonuclease 1 [Homo sapiens]
gi|114637922|ref|XP_001149352.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan troglodytes]
gi|297688500|ref|XP_002821719.1| PREDICTED: flap endonuclease 1 isoform 1 [Pongo abelii]
gi|297688502|ref|XP_002821720.1| PREDICTED: flap endonuclease 1 isoform 2 [Pongo abelii]
gi|332836633|ref|XP_001149490.2| PREDICTED: flap endonuclease 1 isoform 4 [Pan troglodytes]
gi|397516600|ref|XP_003828512.1| PREDICTED: flap endonuclease 1 isoform 1 [Pan paniscus]
gi|397516602|ref|XP_003828513.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan paniscus]
gi|410045196|ref|XP_003951955.1| PREDICTED: flap endonuclease 1 [Pan troglodytes]
gi|426368750|ref|XP_004051365.1| PREDICTED: flap endonuclease 1 isoform 1 [Gorilla gorilla gorilla]
gi|426368752|ref|XP_004051366.1| PREDICTED: flap endonuclease 1 isoform 2 [Gorilla gorilla gorilla]
gi|426368754|ref|XP_004051367.1| PREDICTED: flap endonuclease 1 isoform 3 [Gorilla gorilla gorilla]
gi|729475|sp|P39748.1|FEN1_HUMAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNase
IV; AltName: Full=Flap structure-specific endonuclease
1; AltName: Full=Maturation factor 1; Short=MF1;
Short=hFEN-1
gi|21668123|gb|AAM74238.1|AF523117_1 flap structure-specific endonuclease 1 [Homo sapiens]
gi|642090|gb|AAA91331.1| endonuclease [Homo sapiens]
gi|704377|gb|AAB32522.1| DNase IV=nuclear 42 kda 5' -> 3' exonuclease [human, HeLa cells,
Peptide, 380 aa]
gi|3169155|gb|AAC23394.1| FEN1_HUMAN [Homo sapiens]
gi|3980293|emb|CAA54166.1| flap endonuclease-1 [Homo sapiens]
gi|12653113|gb|AAH00323.1| Flap structure-specific endonuclease 1 [Homo sapiens]
gi|49168608|emb|CAG38799.1| FEN1 [Homo sapiens]
gi|54695918|gb|AAV38331.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|60813555|gb|AAX36265.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|60813577|gb|AAX36266.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355090|gb|AAX41100.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355958|gb|AAX41194.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61362985|gb|AAX42314.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|119594378|gb|EAW73972.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|189053461|dbj|BAG35627.1| unnamed protein product [Homo sapiens]
gi|208968397|dbj|BAG74037.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|410220904|gb|JAA07671.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410267972|gb|JAA21952.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410301536|gb|JAA29368.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410335329|gb|JAA36611.1| flap structure-specific endonuclease 1 [Pan troglodytes]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|388454741|ref|NP_001252879.1| flap endonuclease 1 [Macaca mulatta]
gi|402893159|ref|XP_003909769.1| PREDICTED: flap endonuclease 1 isoform 1 [Papio anubis]
gi|402893161|ref|XP_003909770.1| PREDICTED: flap endonuclease 1 isoform 2 [Papio anubis]
gi|75076152|sp|Q4R5U5.1|FEN1_MACFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|67970375|dbj|BAE01530.1| unnamed protein product [Macaca fascicularis]
gi|355566422|gb|EHH22801.1| Flap endonuclease 1 [Macaca mulatta]
gi|355752043|gb|EHH56163.1| Flap endonuclease 1 [Macaca fascicularis]
gi|380787489|gb|AFE65620.1| flap endonuclease 1 [Macaca mulatta]
gi|383413161|gb|AFH29794.1| flap endonuclease 1 [Macaca mulatta]
gi|384939550|gb|AFI33380.1| flap endonuclease 1 [Macaca mulatta]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|332249905|ref|XP_003274094.1| PREDICTED: flap endonuclease 1 isoform 1 [Nomascus leucogenys]
gi|332249907|ref|XP_003274095.1| PREDICTED: flap endonuclease 1 isoform 2 [Nomascus leucogenys]
gi|441604271|ref|XP_004087863.1| PREDICTED: flap endonuclease 1 [Nomascus leucogenys]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|301781710|ref|XP_002926265.1| PREDICTED: flap endonuclease 1-like [Ailuropoda melanoleuca]
gi|281345366|gb|EFB20950.1| hypothetical protein PANDA_015901 [Ailuropoda melanoleuca]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +GVP L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|261244970|ref|NP_001159668.1| flap endonuclease 1 [Ovis aries]
gi|317376193|sp|C8BKD0.1|FEN1_SHEEP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256665367|gb|ACV04829.1| flap structure-specific endonuclease 1 [Ovis aries]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74605424|sp|Q6CLH4.1|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
Length = 381
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EA+ L +G+P + EAEAQCA L S D D + + R + E
Sbjct: 137 EEAQKLLSLMGIPYVVAPAEAEAQCAELAKSGKVFAAASEDMDTLCYQTPVLLRHLTFSE 196
Query: 123 RGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NV 179
+ E D I L + I L ++LG DY +G++G+GP +A +++K G
Sbjct: 197 ARKLPIQEFDTDVIYNTLDLTQTQFIDLGIILGCDYCEGIKGVGPVNALKLIKEHGSLEA 256
Query: 180 VLQRIASEGLSFVKRAKNSKKEGWSFK 206
++++ + +S + EGW FK
Sbjct: 257 IVEKFENGDIS---SGRWKIPEGWQFK 280
>gi|432089490|gb|ELK23431.1| Flap endonuclease 1 [Myotis davidii]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|302652986|ref|XP_003018331.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
gi|291181960|gb|EFE37686.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
Length = 376
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
+ LGL +G+P L+ EAEAQCA+L G S D D F A + R + E +
Sbjct: 124 RLLGL-MGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRK 182
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
++ +D + LG + L +LLG DY + +GP +A ++++ G
Sbjct: 183 EPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHG 235
>gi|399576495|ref|ZP_10770250.1| flap endonuclease-1 [Halogranum salarium B-1]
gi|399237939|gb|EJN58868.1| flap endonuclease-1 [Halogranum salarium B-1]
Length = 326
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPYIEAPAEGEAQASYMARRGDADYVGSEDYDTLLFGAPFTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L+G+D++ G++G+GP++A + VK GD
Sbjct: 202 DATLAKHDISYEQLVDIAILVGTDFNPGIKGIGPKTALKAVKEHGD 247
>gi|311247497|ref|XP_003122676.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
Length = 393
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +GVP L+ EAEA CA L + D D FG+ + R + E
Sbjct: 153 ECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 212
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 213 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 264
>gi|431910392|gb|ELK13465.1| Flap endonuclease 1 [Pteropus alecto]
Length = 381
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|61680058|pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680059|pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680060|pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 139 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 198
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 199 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 250
>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
gi|317374901|sp|C4M6G8.1|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710440|gb|EMD49517.1| Flap endonuclease, putative [Entamoeba histolytica KU27]
Length = 376
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
E K L +G+PC+E EAE CA L C + D D G+ V R +
Sbjct: 141 EVKKLLQLMGIPCIEANCEAEGTCAALVKAGKCYATATEDMDALTLGSEHVVRKFSANDN 200
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + Y + I + GF I L +LLG DY + ++G+GP +A ++++
Sbjct: 201 KKDPIREYSLSSILEETGFTMEQFIDLCILLGCDYCETIKGVGPITAFELIQ 252
>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
gi|317374888|sp|B3MDA3.1|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
Length = 388
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EAK L +GVP +E EAEAQCA L + D D FG+ + R + E
Sbjct: 139 REAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSE 198
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ V + + + LG I L +LLG DY + ++G+GP+ A +++ + D
Sbjct: 199 ARKMPVKEFSYEKLLDGLGVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIET 258
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFK 206
+ L + +K + E W++K
Sbjct: 259 I-------LDNLDTSKYTVPENWNYK 277
>gi|390599013|gb|EIN08410.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 518
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 73 GVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
G+PC+E G EAEA + L L D S D+D+ ++ A + R+I +
Sbjct: 321 GIPCIETRGAFEAEALASALVLSGRADYVASEDTDVLIYEA-PLLRNI-TSRNVPLSLLS 378
Query: 131 MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLS 190
D+ L R+S I ALLLG+D+SQ ++ +GP A + ++S G + Q + EG +
Sbjct: 379 GSDVRSVLSLTRSSYIDFALLLGTDFSQRIKNVGPARALRFIRSYGS--IEQILKHEGET 436
Query: 191 FVKR 194
+ R
Sbjct: 437 YPPR 440
>gi|78042574|ref|NP_001030285.1| flap endonuclease 1 [Bos taurus]
gi|61553249|gb|AAX46374.1| flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQ 251
>gi|326478513|gb|EGE02523.1| flap endonuclease [Trichophyton equinum CBS 127.97]
Length = 353
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
+ LGL +G+P L+ EAEAQCA+L G S D D F A + R + E +
Sbjct: 139 RLLGL-MGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRK 197
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
++ +D + LG + L +LLG DY + +GP +A ++++ D+ L++
Sbjct: 198 EPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIR---DHGTLEK 254
Query: 184 IASEGLSFVKRAKNSKKEGWSF 205
+ E + + K E W +
Sbjct: 255 VV-EAIESDPKKKYVIPEDWPY 275
>gi|296218462|ref|XP_002755459.1| PREDICTED: flap endonuclease 1 [Callithrix jacchus]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKRLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASES 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|444513068|gb|ELV10260.1| Flap endonuclease 1 [Tupaia chinensis]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLSQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|75775305|gb|AAI05256.1| Flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQ 251
>gi|407034393|gb|EKE37191.1| flap nuclease, putative [Entamoeba nuttalli P19]
Length = 376
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
E K L +G+PC+E EAE CA L C + D D G+ V R +
Sbjct: 141 EVKKLLQLMGIPCIEANCEAEGSCAALVKAGKCYATATEDMDALTLGSEHVVRKFSASDN 200
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + Y + I + GF I L +LLG DY + ++G+GP +A ++++
Sbjct: 201 KKDPIREYSLSSILEETGFTMEQFIDLCILLGCDYCETIKGVGPITAFELIQ 252
>gi|374636521|ref|ZP_09708087.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
gi|373558724|gb|EHP85052.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
Length = 326
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 43 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 102
N+++M + M +++ +K L +G+P + E E Q + + + S
Sbjct: 113 NIEEMQKYAKRMNFLTKDIVENSKKLLDLMGIPYVNAPAEGEGQASYMAKKGDVFCVVSQ 172
Query: 103 DSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVR 161
D D L+GA V R++ + + E+ ++ +LG + LI +A+L+G+DY+ +GV+
Sbjct: 173 DYDALLYGAPRVVRNL-TATKEELELIELKEVLNELGISHDDLIDMAILIGTDYNPKGVK 231
Query: 162 GLGPESACQIVKSVGDNVVLQRI 184
G+GP+ A +I KS + L+ I
Sbjct: 232 GIGPKKALEIAKSKNKELYLKAI 254
>gi|81883819|sp|Q5XIP6.1|FEN1_RAT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53733451|gb|AAH83630.1| Fen1 protein [Rattus norvegicus]
gi|149062370|gb|EDM12793.1| flap structure-specific endonuclease 1 [Rattus norvegicus]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + VRG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVRGIGPKRAVDLIQ 251
>gi|311247499|ref|XP_003122675.1| PREDICTED: flap endonuclease 1-like isoform 1 [Sus scrofa]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +GVP L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|291409580|ref|XP_002721064.1| PREDICTED: flap structure-specific endonuclease 1 [Oryctolagus
cuniculus]
Length = 380
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|395646325|ref|ZP_10434185.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
gi|395443065|gb|EJG07822.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
Length = 333
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
MI +K L +G+P + E EAQ A + + S D D LFGA + R++
Sbjct: 131 AMIASSKRLLDLMGIPWMVAPSEGEAQAAFMARQGDVGAAASQDYDALLFGAPRLVRNLT 190
Query: 120 LGE----RGYVVCYEMDDIE-----RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+ RG V + I+ LG R L+ + +L+G+D++ G+RG+G ++A +
Sbjct: 191 VSGKRKVRGRSVTVRPERIDLAAVLAGLGLSREELVEIGILIGTDFNPGIRGVGAKTALK 250
Query: 171 IVKS 174
IV+
Sbjct: 251 IVRG 254
>gi|68062082|ref|XP_673044.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490604|emb|CAI01886.1| hypothetical protein PB300433.00.0 [Plasmodium berghei]
Length = 375
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI----- 118
EAK L +G+P +E EAEAQCA L + + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATATEDADALVFGTKILIRNLNANAS 201
Query: 119 -------WLGERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 170
+RGY++ ++ + + L + I +L G DY ++G+G ++A
Sbjct: 202 SNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFCILCGCDYCDTIKGIGSKTAYN 261
Query: 171 IVK 173
++K
Sbjct: 262 LIK 264
>gi|448733248|ref|ZP_21715493.1| flap endonuclease-1 [Halococcus salifodinae DSM 8989]
gi|445802982|gb|EMA53282.1| flap endonuclease-1 [Halococcus salifodinae DSM 8989]
Length = 325
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ A + D S D D LFGA R L +G C E
Sbjct: 144 LDVPVVEAPAEGEAQAAHMARSGTVDYAGSEDYDTLLFGAPHTLRG--LTGKGDPECMEF 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
+ ++ L+ + +L G+D+++GV G+GP++A ++V+ GD
Sbjct: 202 EATLKEHDLTWEQLVDVGILCGTDFNEGVSGVGPKTAVKLVREHGD 247
>gi|413950170|gb|AFW82819.1| hypothetical protein ZEAMMB73_260442 [Zea mays]
Length = 395
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 30/36 (83%)
Query: 80 VEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
VEEAE QCALL+ SL DGCF+SD D FLFGARTVY
Sbjct: 152 VEEAETQCALLSFASLRDGCFTSDLDSFLFGARTVY 187
>gi|400597409|gb|EJP65142.1| DNA repair endonuclease rad2 [Beauveria bassiana ARSEF 2860]
Length = 808
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
+AK L G+P L+ EAEA+CALL + D S D D +FG R+ W E
Sbjct: 102 QAKRLIRLFGLPALDAPGEAEAECALLQRHGIVDAVLSEDVDTIMFGCTKTLRN-WSAEG 160
Query: 123 -----RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQ 170
+V Y+ + G R ++ +AL+ G DY G+ G G + AC+
Sbjct: 161 KTVTVPTHVSLYDTAAVANH-GLDRQGMVLVALMSGGDYLPDGLPGCGVKVACE 213
>gi|255072853|ref|XP_002500101.1| predicted protein [Micromonas sp. RCC299]
gi|226515363|gb|ACO61359.1| predicted protein [Micromonas sp. RCC299]
Length = 827
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 11/129 (8%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG----YV 126
+LG+P +E EAEA CA+++ + DGC +SD D LFGARTV++ + L + ++
Sbjct: 166 ALGLPGVEAPGEAEATCAVMDSMGIVDGCVTSDGDSLLFGARTVFKTLRLSQNDQRDLFM 225
Query: 127 VCYEMDDIERKLGFGRN------SLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNV 179
E D+ ++L G + +L LALL G DY G + +G A +VK++ +
Sbjct: 226 ERVEAADVGKRLMLGDDVEHVAPALTALALLTGGDYDLTGAKNVGGTKALLVVKALAKDE 285
Query: 180 VLQRIASEG 188
+ A G
Sbjct: 286 ARRTRAEPG 294
>gi|302504898|ref|XP_003014670.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
gi|291177976|gb|EFE33767.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
Length = 359
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
+ LGL +G+P L+ EAEAQCA+L G S D D F A + R + E +
Sbjct: 107 RLLGL-MGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRK 165
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
++ +D + LG + L +LLG DY + +GP +A ++++ G
Sbjct: 166 EPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHG 218
>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
Length = 519
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L +GVP ++ EAEAQCA+L S D D F + + R + E
Sbjct: 263 EECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSE 322
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ ++ +D + L R + L +LLG DY + +GP +A ++++ G
Sbjct: 323 QRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGS--- 379
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 225
L+++ E + + K + E W +K + L + +V DH
Sbjct: 380 LEQVV-EAIKSDPKKKYTIPEDWPYK---EARELFFDPDVRNADH 420
>gi|449544559|gb|EMD35532.1| hypothetical protein CERSUDRAFT_116277 [Ceriporiopsis subvermispora
B]
Length = 683
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 49 SLRRNMGSEFSCMIKEAKALGLSLGVPCL--EGVEEAEAQCALLNLESLCDGCFSSDSDI 106
S RR ++ K + ++GVPC+ +G EAEA + L L+ L D S D+D+
Sbjct: 474 SYRRRTNPPTVETYEQCKEIIDAMGVPCIVTDGPYEAEALASALVLQGLGDYVASEDTDV 533
Query: 107 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 166
++ A + R++ RG + ++ L R + ALLLG+D+SQ ++ +GP
Sbjct: 534 LVYEA-PLLRNL-TNRRGPLHVISGAELRAGLQLDRAGFVDFALLLGTDFSQRIKHVGPA 591
Query: 167 SACQIVKSVG 176
A + +++ G
Sbjct: 592 RALRFIRAHG 601
>gi|330509049|ref|YP_004385477.1| FLAP endonuclease [Methanosaeta concilii GP6]
gi|328929857|gb|AEB69659.1| FLAP endonuclease [Methanosaeta concilii GP6]
Length = 339
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 11/130 (8%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S +I++ + L L++G+P ++ E EAQ A + D S D D LFGA V R++
Sbjct: 130 SEIIEDGRRLILAMGLPVIQAPSEGEAQAAYMAARGDVDYAGSQDYDSLLFGAPLVVRNL 189
Query: 119 WL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
+ G+R YV V E+ ++E LG L+ + ++ G+D++ G+ +GP++
Sbjct: 190 AITGKRKLPRKNIYVDVEPEVINLEVGLANLGITHKQLVEIGIMCGTDFNSGLERVGPKT 249
Query: 168 ACQIVKSVGD 177
A ++++ GD
Sbjct: 250 ALKLIREKGD 259
>gi|379991146|ref|NP_001244014.1| flap endonuclease 1 [Equus caballus]
Length = 380
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|443894995|dbj|GAC72341.1| hypothetical protein PANT_7d00055 [Pseudozyma antarctica T-34]
Length = 373
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEF 58
+ Y + +G+ P +K ++R E +D +++KM L R
Sbjct: 76 IDYGIKPMYVFDGTPPDLKKELLKKRFGRREEAREQEEEQKDVADVEKMDQLARRQVRPT 135
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+E + L +G+PC+ EAEAQCA L S D D FG + + +
Sbjct: 136 RQHNEEVRQLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHL 195
Query: 119 WLGERGYVVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQGVRGLGPESACQIVK 173
E+ + +++D + G + I L +LLG DY ++G+GP++A ++++
Sbjct: 196 TASEQKKLPVHQVDLPKALEGLQMDMPQFIDLCILLGCDYLDPIKGIGPKTALKLIR 252
>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
gi|317374871|sp|B0UXL7.1|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
homolog; AltName: Full=Flap structure-specific
endonuclease 1 homolog
Length = 350
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 48 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 107
SS N GS F+ +E L +GVPC++ EAEA CA L + S D D
Sbjct: 99 SSQSPNTGSAFN---QECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTL 155
Query: 108 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
FG + R + + Y + + L + L +LLG DY + GLGP
Sbjct: 156 AFGGTVLLRQLNAKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSR 215
Query: 168 ACQIVK 173
A +++K
Sbjct: 216 ALKLIK 221
>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
Length = 380
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +GVP +E EAEAQCA + + D D FG+ V R + E
Sbjct: 140 EAKELLRLMGVPYIEAPCEAEAQCAAMVKAGKIYATATEDMDALTFGSDIVLRHLTFSEA 199
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+ E + + ++L + I +L+G DY+ +RG+GP+ + +++K+
Sbjct: 200 RKMPIQEIHLKIVLQELNLSQTEFIDFCILMGCDYTDSIRGIGPKKSIELIKN------- 252
Query: 182 QRIASEGLSFVKRAKNSKKEGWSF 205
R + L + ++K E W++
Sbjct: 253 HRSIEKILENIDKSKYPPPEDWNY 276
>gi|403341860|gb|EJY70247.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 404
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++AK L +G P +E EAEAQCA++ L S D D FG + R +
Sbjct: 142 MMEDAKKLLRLMGTPVVEAPGEAEAQCAVIVKHGLAYATASEDMDSLTFGTNVLLRG-FN 200
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV- 179
++ ++ ++ + I L +L G DY+ + G+GP A + + G +
Sbjct: 201 SKKEPIIQIDLAQVLEGFNLNHEQFIDLCILCGCDYTTNIPGVGPVKAFKFISEEGGTIE 260
Query: 180 -VLQRIASEGLSFVKRAKNSKKEGWSFK 206
V+ RI E K+ K + E + +K
Sbjct: 261 NVISRIEKENDDPKKKKKYTIPETFYYK 288
>gi|393225781|gb|EJD33677.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 42/235 (17%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW----------- 119
S G + EAEA A LN L D ++ D D FLFGA TV R+
Sbjct: 117 SFGFEWRKAPGEAEADLAWLNSMGLIDAVWTDDGDAFLFGATTVMRNPGRNLSSNIRSPA 176
Query: 120 LGERG-----YVVCYEMDDI--ERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
L G V + +D+ + RN LI +ALL G DY +G+ G+G A +
Sbjct: 177 LTMEGKQNENQVHVFHAEDLIDNENIRLDRNGLILVALLRGGDYHEGIDGVGMTIAHALA 236
Query: 173 KSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH------- 225
+ A G + ++ E + + L QE+ + H
Sbjct: 237 R-----------AGFGDTLAAAMQSPDVETLAGVISQWRSELVQELRTDSQGHLGRRHPA 285
Query: 226 ---SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQW 277
S+ + P V +AY+NP + + A++ +L L Q C + F+W
Sbjct: 286 LAASIPLDFPDLDVYNAYANPVVSNLGTVAINWYRLPNL---TGLAQACERHFEW 337
>gi|154309183|ref|XP_001553926.1| hypothetical protein BC1G_07486 [Botryotinia fuckeliana B05.10]
Length = 399
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 102/258 (39%), Gaps = 45/258 (17%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR--------- 116
K + SLGV E EAEA+CA L + D ++ DSD F+FG ++ R
Sbjct: 84 KKMATSLGVIWHEAPGEAEAECAALQSRGVVDAIWTEDSDAFMFGCTSLIRFCHVKKPKV 143
Query: 117 ------DIWLGER---------GYVVCYEMDDIERKL-GFGRNSLITLALLLGSDYSQGV 160
W+ E ++ Y D I+ + G R+ L+ A+L G DYS+
Sbjct: 144 KRPGNNQDWVNESDETRREVDLDNIIIYRADKIQEQFPGLTRDGLVLFAVLKGGDYSKDG 203
Query: 161 RGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEE---SLNQE 217
+ L + G ++ LQ IA+ F K N +S N+ E S+N+
Sbjct: 204 KSL---------TNCGASLALQ-IATAKEGFGKDLCNVSHADFSIWRNSLREHLTSINKR 253
Query: 218 INVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQW 277
I+V P +++ Y+ P S + F L + A F +
Sbjct: 254 IDV-------PDNFPDPRIVGLYNKPLVSSEKITSDIGKFWNPSFDEMELQRFIAPIFNF 306
Query: 278 PPEKTDEYILPKIAERDL 295
+ +YILP + R L
Sbjct: 307 WVAEYIKYILPILLVRSL 324
>gi|26335423|dbj|BAC31412.1| unnamed protein product [Mus musculus]
Length = 380
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|448578528|ref|ZP_21643963.1| flap endonuclease-1 [Haloferax larsenii JCM 13917]
gi|445727069|gb|ELZ78685.1| flap endonuclease-1 [Haloferax larsenii JCM 13917]
Length = 326
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L G+D+++G+ G+GP++A + VK GD
Sbjct: 202 DATLDKHDITWEQLVDIAMLCGTDFNEGISGVGPKTAVKEVKKHGD 247
>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
gi|74854014|sp|Q54NU0.1|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
Length = 384
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCY 129
+GVP ++ EAEAQCA + + S D D G+ + R ++ E + ++ +
Sbjct: 149 MGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEF 208
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
E+ + LG ++ I L++LLG DY ++G+GP+ A ++++
Sbjct: 209 ELQSVLEGLGLTQDEFIDLSILLGCDYCDSIKGIGPKRAIELIQ 252
>gi|432911452|ref|XP_004078686.1| PREDICTED: probable flap endonuclease 1 homolog [Oryzias latipes]
Length = 343
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
LGVP ++ +AE CA L E S D D FGA + R + + +V Y +
Sbjct: 117 LGVPVVQAPGDAEGLCASLVREGRAHAVASEDMDTLPFGANVLIRQLNAKKDSEIVEYSL 176
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 191
+ L L+ L +LLG DY + GLGP+ A +++ R L
Sbjct: 177 PKLLEALRISLEELVDLCILLGCDYCDKIPGLGPKRALALIQK-------HRTIENVLLN 229
Query: 192 VKRAKNSKKEGWSFK 206
+ R + W FK
Sbjct: 230 INRETHPVPHLWKFK 244
>gi|46048490|ref|NP_032025.2| flap endonuclease 1 [Mus musculus]
gi|410025484|ref|NP_001258543.1| flap endonuclease 1 [Mus musculus]
gi|410025486|ref|NP_001258544.1| flap endonuclease 1 [Mus musculus]
gi|16307328|gb|AAH10203.1| Flap structure specific endonuclease 1 [Mus musculus]
gi|26337949|dbj|BAC32660.1| unnamed protein product [Mus musculus]
gi|26347483|dbj|BAC37390.1| unnamed protein product [Mus musculus]
gi|53791234|dbj|BAD52443.1| flap endonuclease 1 [Mus musculus]
gi|74145457|dbj|BAE36169.1| unnamed protein product [Mus musculus]
gi|74150381|dbj|BAE32236.1| unnamed protein product [Mus musculus]
gi|74185061|dbj|BAE39135.1| unnamed protein product [Mus musculus]
gi|148709396|gb|EDL41342.1| flap structure specific endonuclease 1, isoform CRA_c [Mus
musculus]
Length = 380
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|20071071|gb|AAH27295.1| Fen1 protein [Mus musculus]
Length = 380
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|307594203|ref|YP_003900520.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
gi|307549404|gb|ADN49469.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
Length = 349
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M+++AK L +G+P ++ + + EAQ A++ E S D D LFGA + R++ +
Sbjct: 135 MVEDAKKLLRLMGIPVVQAMADGEAQAAVIAREGKAWAAGSQDYDSLLFGAPRLVRNLAI 194
Query: 121 GERG-------YV----VCYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 167
R Y+ E++++ + L R LI LA+LLG+D + GV G+GP+
Sbjct: 195 TGRRKLPNKDEYIEIKPEIIELNEVLKALKLKDRTQLIDLAILLGTDLNPDGVPGIGPQR 254
Query: 168 ACQIVKSVG 176
A ++++ G
Sbjct: 255 ALRLIQEFG 263
>gi|448592407|ref|ZP_21651514.1| flap endonuclease-1 [Haloferax elongans ATCC BAA-1513]
gi|445731412|gb|ELZ82996.1| flap endonuclease-1 [Haloferax elongans ATCC BAA-1513]
Length = 326
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L G+D+++G+ G+GP++A + VK GD
Sbjct: 202 DATLDKHDITWEQLVDIAMLCGTDFNEGISGVGPKTAVKEVKKHGD 247
>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
Length = 320
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +GVP + EAEAQCA L + D D FG++ + R + E
Sbjct: 76 EAKKLLRLMGVPVFDAPCEAEAQCAELVRAGKVFAAATEDMDALAFGSKRLLRQLTASEA 135
Query: 124 GYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV-KSVGDNVV 180
+ E ++ + + + L +LLG DY++ +RG+GP+ A +++ K V
Sbjct: 136 KKLPVKEINLEQVLKDFEMDMPQFVDLCILLGCDYTKTIRGIGPKKAFELIQKHKTIENV 195
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L+ I +E K E W F+ + + EI N D +LQ P ++ I Y
Sbjct: 196 LENIDTE--------KYPVPENWQFR-EARRLFMKPEIT-NCEDINLQWGKPDTEEIVRY 245
>gi|148709394|gb|EDL41340.1| flap structure specific endonuclease 1, isoform CRA_a [Mus
musculus]
Length = 396
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 156 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 215
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 216 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 267
>gi|299751761|ref|XP_001830466.2| hypothetical protein CC1G_07381 [Coprinopsis cinerea okayama7#130]
gi|298409522|gb|EAU91346.2| hypothetical protein CC1G_07381 [Coprinopsis cinerea okayama7#130]
Length = 783
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 31/256 (12%)
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD------------- 117
+ GV E EAEA+ LN + D S D D F+FGA+ V ++
Sbjct: 94 AFGVEWREAPGEAEAELGHLNNLGIIDAIMSDDCDSFIFGAKVVIKNKSKELSGNASNPA 153
Query: 118 ---IWLGERGYVVCYEMDDIER--KLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQI 171
++ + + Y ++DI+ +G R L+ ALL G DY Q GVR +G +A +
Sbjct: 154 VNAAGKVDKHHTMVYRIEDIQNDPDIGLKRGGLVLFALLCGGDYDQKGVRNIGKVAALAL 213
Query: 172 VK-SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 230
+ G+ ++ F + + E + N L++ + + SL +
Sbjct: 214 ARCGFGEKLLAAYQTKSPAEFQRFLHQWRSEVNTELMTNSRGFLSRRMQ----NASLPPD 269
Query: 231 TPFSQVIDAYSNPKCYS--ADSEAVHRVLAQHLFQHARLHQVCAQFFQWPP-----EKTD 283
P ++ Y+NPK S + + A L C ++F+W EK
Sbjct: 270 FPALTTLEKYANPKISSNGGSGPVTSGMRDRGDVDLAALAAFCEKYFEWATKDGILEKFR 329
Query: 284 EYILPKIAERDLRRFA 299
+ P A LRR A
Sbjct: 330 NNVWPVAAMHVLRRSA 345
>gi|355688549|gb|AER98539.1| flap structure-specific endonuclease 1 [Mustela putorius furo]
Length = 379
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +GVP L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + I ++LG + + L +LLGSDY + +RG+GP A +++
Sbjct: 200 KKLPIQEFHLSRILQELGLSQEQFVDLCILLGSDYCESIRGIGPRRAVGLIQ 251
>gi|397780742|ref|YP_006545215.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
gi|396939244|emb|CCJ36499.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
Length = 333
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG----ERGYVV 127
LG+P ++ E EAQ A + S D D LFG+ + R++ + RG +
Sbjct: 143 LGIPVVQAPSEGEAQAAHMVRSGGVTYAVSQDYDSLLFGSPVLVRNLTVSGRRKARGRTI 202
Query: 128 C-----YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ + + +LG R LI + +L+G+D++ G+RG+G ++A ++V+S
Sbjct: 203 TVNPERFVLSSVLDRLGVTREQLIEIGILVGTDFNPGIRGVGGKTALKVVRS 254
>gi|150402483|ref|YP_001329777.1| flap endonuclease-1 [Methanococcus maripaludis C7]
gi|150033513|gb|ABR65626.1| XPG I [Methanococcus maripaludis C7]
Length = 324
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 39 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL--NLESLC 96
++ NL++M + I +K L +G+P + E EAQCA L + ++ C
Sbjct: 109 KEQNNLEEMQKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDAFC 168
Query: 97 DGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
S D D L+GA V ++I + + E+ +L N LI +A+L+G+DY
Sbjct: 169 --VISQDYDSILYGAENVVKNITSSNKD-IELIELQKTLSELNVSLNQLIDVAILIGTDY 225
Query: 157 S-QGVRGLGPESACQIVK 173
+ G++G GP+ A VK
Sbjct: 226 NPGGLKGFGPKKAIDTVK 243
>gi|146090657|ref|XP_001466297.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|398017392|ref|XP_003861883.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
gi|317374906|sp|A4I2L4.1|FEN1_LEIIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134070659|emb|CAM69008.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|322500111|emb|CBZ35186.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
Length = 395
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K R +E + DD+ ++KMS + + I E+
Sbjct: 89 FDGKPPKLKADELEMRRQKAAEAEREFEKAKDAGDDEMMEKMSKRTVRVSRD---QIDES 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GER 123
K L +G+P ++ EAEAQCA L + + D D FG+ + R + + ++
Sbjct: 146 KKLLRLMGIPVIQAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNISDAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+ +D++ + G + L +LLG DY V G+GP+ A + ++ G
Sbjct: 206 RPIAEIHLDEVLQITGLSMGQFVDLCILLGCDYVPKVPGIGPQKAWEGIQRYG 258
>gi|320593627|gb|EFX06036.1| flap structure-specific endonuclease [Grosmannia clavigera kw1407]
Length = 749
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 124
AK L G + EAEA+CALL + D S D D +FG R+ W
Sbjct: 103 AKRLIRLFGFMAHDAPGEAEAECALLQQRGVVDAVLSEDVDTIMFGCTRTLRN-WSSATA 161
Query: 125 ------YVVCYEMDDIER-KLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 174
+V YE D +++ K G R ++ +AL+ G DY +G+ G G + ACQ K+
Sbjct: 162 TTSPPTHVSMYETDSLQQDKSGLDREGMVLVALMSGGDYLPEGIPGCGVKLACQAAKA 219
>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
Length = 333
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 48 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 107
SS N GS F+ +E L +GVPC++ EAEA CA L + S D D
Sbjct: 82 SSQGPNTGSAFN---QECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTL 138
Query: 108 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 167
FG + R + + Y + + L + L +LLG DY + GLGP
Sbjct: 139 AFGGTVLLRQLNAKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSR 198
Query: 168 ACQIVK 173
A +++K
Sbjct: 199 ALKLIK 204
>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
Length = 379
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
EAK L +G+P ++ EAEAQCA + + D D FG + R + E
Sbjct: 140 EAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKVFATATEDMDALTFGCNILLRRLTFSEA 199
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ V + D + L + I L ++LG DY+ ++G+GP+ A +++K+
Sbjct: 200 RKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGCDYTNSIKGVGPKRAIELIKT 252
>gi|241958698|ref|XP_002422068.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223645413|emb|CAX40069.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 686
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
SE + +++ K + + ++ E EAQCA L + D S D D +FGAR V
Sbjct: 117 SENNPFVEQLKIELFNNKIEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFGARQVL 176
Query: 116 R-----------------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 158
R DI YV +MD +E++ G + LI LA L G DYS
Sbjct: 177 RNFSRFAEDIGKSPPKTSDITARSSYYVTPVDMDKVEQETGLTTSRLIFLASLRGGDYSV 236
Query: 159 GVRGLG 164
G + +G
Sbjct: 237 GAKKMG 242
>gi|344258300|gb|EGW14404.1| Flap endonuclease 1 [Cricetulus griseus]
Length = 412
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 172 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 231
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 232 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 283
>gi|410074109|ref|XP_003954637.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
gi|372461219|emb|CCF55502.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
Length = 379
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 19/243 (7%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIK-------EAKA 67
+G P +K +R E T K LD+ + + + E ++K EAK
Sbjct: 86 FDGKPPVLKSHELSKRTARREETT---KKLDEATDIAEKIKHERR-LVKVSKEHNDEAKK 141
Query: 68 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV 127
L +G+P + EAEAQCA L S D D + + R + E
Sbjct: 142 LLELMGIPYVNAPCEAEAQCAELAKVGKVYAAASEDMDTLCYRTPYLVRHLTFSEAKKEP 201
Query: 128 CYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIA 185
E++ + + + I L ++LG DY + +RG+GP +A +++K G L++I
Sbjct: 202 IQEINTEIVLQSMDLTLEQFIDLGIMLGCDYCESIRGVGPVTALKLIKEHGS---LEKIV 258
Query: 186 SEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQ-VIDAYSNPK 244
S + K E W +K +E L ++ +NG D +L+ P Q +ID K
Sbjct: 259 EYIDSGDTKTKWKIPENWPYK-EARELFLKPDV-INGNDITLKWNPPKEQELIDYLCKDK 316
Query: 245 CYS 247
+S
Sbjct: 317 GFS 319
>gi|315047298|ref|XP_003173024.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
gi|311343410|gb|EFR02613.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
Length = 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
+ LGL +G+P L+ EAEAQCA+L G S D D F A + R + E +
Sbjct: 207 RLLGL-MGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRK 265
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
++ ++ + LG + L +LLG DY + +GP +A ++++ D+ L++
Sbjct: 266 EPILEIHLEKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKLIR---DHGTLEK 322
Query: 184 IASEGLSFVKRAKNSKKEG 202
+ + +R +S+ G
Sbjct: 323 VVEAMRATPRRNTSSRTTG 341
>gi|448565137|ref|ZP_21636108.1| flap endonuclease-1 [Haloferax prahovense DSM 18310]
gi|445715796|gb|ELZ67549.1| flap endonuclease-1 [Haloferax prahovense DSM 18310]
Length = 326
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
L VP +E E EAQ + + + D S D D LFGA R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDPLLFGAPYTLRQ--LTSKGDPELMDL 201
Query: 132 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
D K L+ +A+L G+D+++G+ G+GP++A ++V GD
Sbjct: 202 DATLDKHDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHGD 247
>gi|367013806|ref|XP_003681403.1| hypothetical protein TDEL_0D06080 [Torulaspora delbrueckii]
gi|359749063|emb|CCE92192.1| hypothetical protein TDEL_0D06080 [Torulaspora delbrueckii]
Length = 641
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 50 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 109
L+ N + + ++ K L ++ + +E E EAQCA L D S+DSD +F
Sbjct: 137 LKANYVDDSTGFMRAVKLLLDTMKISYIEACGEGEAQCAWLQKNGYVDYALSNDSDTLIF 196
Query: 110 GARTVYRDIW-----LGERG---------------YVVCYEMDDIERKLG--FGRNSLIT 147
G+ + R+ G G ++ E+DDI + +L+
Sbjct: 197 GSTKMLRNYSKAIDDFGVTGVGSHRPEVRRDTKETFITVVELDDIRESTTDRYEWWTLLF 256
Query: 148 LALLLGSDYSQGVRGLGPESACQIVK 173
++LLG+DY+QG++GLG + ++ +
Sbjct: 257 FSILLGADYNQGIKGLGKTKSARLAQ 282
>gi|452981413|gb|EME81173.1| hypothetical protein MYCFIDRAFT_189405 [Pseudocercospora fijiensis
CIRAD86]
Length = 393
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+EA+ L +GVP + EAEAQCA++ S D D F + + R + E
Sbjct: 139 QEAQRLLKLMGVPYIIAPTEAEAQCAVIARAGKVYAAASEDMDTLTFASPVLLRKLTFSE 198
Query: 123 RGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ E +D + L +N I L +LLG DY V+G+GP++A ++K ++
Sbjct: 199 QRKEPIQEIHLDRVLEGLDMDQNQFIDLCILLGCDYLDPVKGIGPKNALALIK---EHKN 255
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 225
L+ + + K K + E W ++ L QE +V DH
Sbjct: 256 LEGVVA---MIEKTGKYTLPEDWPYQ---DARVLFQEPDVRQADH 294
>gi|393243595|gb|EJD51109.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 645
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 63 KEAKALGLSLGVPCL--EGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+E++ + +LGVPCL +G E EA + L + D S D+D+ ++ A + R +
Sbjct: 417 EESQQMLRALGVPCLSSDGPHEGEAFASALVHAGVADYVASEDTDVLVYEA-PLLRGL-T 474
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
R + ++ LG R + + ALLLG+D+S+ +RGLGP + ++K
Sbjct: 475 NLRSPLTVISGSEVREALGLSRAAFVDFALLLGTDFSRRLRGLGPMRSIALIK 527
>gi|354503001|ref|XP_003513570.1| PREDICTED: flap endonuclease 1-like [Cricetulus griseus]
Length = 380
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|429217578|ref|YP_007175568.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
gi|429134107|gb|AFZ71119.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 351
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 15 LNGSIPAIKLSTYRRRLN---SGSEVTQDDKNLDKMSSLRRNMGSEFSC---MIKEAKAL 68
+G P +K R+N +E Q K K+ ++ + S M+++AK L
Sbjct: 85 FDGKPPEMKKKEIEDRINRRQQYAEKYQKAKQEGKIEEAKKYAQASTSLSNKMVEDAKQL 144
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-GERG--- 124
+G+P ++ + EAQ A + + S D D LFG+ + R++ + G+R
Sbjct: 145 LTYMGIPWVQAPADGEAQAAYMAKKGDVYATGSQDYDSLLFGSPKLLRNLAITGKRKLPN 204
Query: 125 ---YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVG 176
Y+ ++D+ + L R LI + +LLG+D++ G +G GP++A + VK
Sbjct: 205 KEEYIEIKPELINLNDMLKALEITREQLIVIGILLGTDFNPDGFKGYGPKTALKYVKEHR 264
Query: 177 DNV 179
D +
Sbjct: 265 DPI 267
>gi|380015033|ref|XP_003691516.1| PREDICTED: flap endonuclease 1-like [Apis florea]
Length = 383
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
EAK L +G+P ++ EAEAQCA + + D D FG + R + E
Sbjct: 140 EAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKVFATATEDMDALTFGCNILLRRLTFSEA 199
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ V + D + L + I L ++LG DY+ ++G+GP+ A +++K+
Sbjct: 200 RKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGCDYTNSIKGVGPKRAIELIKT 252
>gi|410974093|ref|XP_003993482.1| PREDICTED: flap endonuclease 1 [Felis catus]
Length = 380
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 251
>gi|395545349|ref|XP_003774565.1| PREDICTED: flap endonuclease 1 [Sarcophilus harrisii]
Length = 380
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L +G+P LE EAEA CA L + D D FG+ + R + E
Sbjct: 139 EECKRLLRLMGIPYLEAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASE 198
Query: 123 RGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + + LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 199 AKKLPIQEFHLSRVLQGLGLTQEQFVDLCILLGSDYCESIRGIGPKRAMDLIQ 251
>gi|148709395|gb|EDL41341.1| flap structure specific endonuclease 1, isoform CRA_b [Mus
musculus]
Length = 432
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P L+ EAEA CA L + D D FG+ + R + E
Sbjct: 192 ECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 251
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 252 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 303
>gi|327306185|ref|XP_003237784.1| flap endonuclease [Trichophyton rubrum CBS 118892]
gi|326460782|gb|EGD86235.1| flap endonuclease [Trichophyton rubrum CBS 118892]
Length = 447
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
E K L +G+P L+ EAEAQCA+L G S D D F A + R + E
Sbjct: 192 ECKRLLELMGIPYLDAPTEAEAQCAVLARAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQ 251
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+ ++ +D + LG + L +LLG DY + +GP +A ++++ G
Sbjct: 252 RKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHG 306
>gi|115456427|ref|NP_001051814.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|62510683|sp|Q75LI2.1|FEN12_ORYSJ RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B; AltName:
Full=OsFEN-1b
gi|317374867|sp|B8AMS4.1|FEN12_ORYSI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|40714676|gb|AAR88582.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|108711942|gb|ABF99737.1| Flap endonuclease-1b, putative, expressed [Oryza sativa Japonica
Group]
gi|113550285|dbj|BAF13728.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|215692762|dbj|BAG88230.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194043|gb|EEC76470.1| hypothetical protein OsI_14202 [Oryza sativa Indica Group]
gi|222626117|gb|EEE60249.1| hypothetical protein OsJ_13256 [Oryza sativa Japonica Group]
Length = 412
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI--WLGERGYVVCY 129
+GVP ++ EAEAQCA L S D D FGAR R + +R V +
Sbjct: 149 MGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEF 208
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
E+ + +LG + I L +L G DY + +RG+G + A ++++ G
Sbjct: 209 EVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHG 255
>gi|365759754|gb|EHN01528.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 29 RRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA 88
RR + ++ + L+KM RR + + K LGL +GVP + EAEAQCA
Sbjct: 104 RREETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGL-MGVPYIIAPTEAEAQCA 162
Query: 89 LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLI 146
L + S D D + + R + E +E+D + R L +
Sbjct: 163 ELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFV 222
Query: 147 TLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSF 205
L ++LG DY + +RG+GP +A +++++ G +++ I SE S K E W +
Sbjct: 223 DLCIMLGCDYCESIRGVGPVTALKLMRTHGSIEKIIEFIESEESS---NTKWKIPEDWPY 279
Query: 206 K 206
K
Sbjct: 280 K 280
>gi|317374922|sp|Q013G9.2|FEN1_OSTTA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 389
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 32/216 (14%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E L LG+P E EAEA CA + L + D D F A V R++ +
Sbjct: 141 EVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLVWAVGTEDMDTLTFAAPRVARNLMAPKS 200
Query: 124 GY--VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 180
V+ ++ + LG + I L +L G DY+ +RG+GP++A +++K G +
Sbjct: 201 AEKPVLEFDYEKTIAGLGLTADQFIDLCILCGCDYTDTIRGVGPKTALKLIKEHGSIEKI 260
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI-NVNGTDHSLQRETPFSQVIDA 239
L+ I +E K + W F +E N E+ +V+G + S +
Sbjct: 261 LEAIDTE--------KYPPPKDWEF-AGARELFKNPEVMDVSGINLSWK----------- 300
Query: 240 YSNPKCYSADSEA-VHRVLAQHLFQHARLHQVCAQF 274
+ D E V ++ + FQ R+ VCA+
Sbjct: 301 -------APDEEGLVEFLVKEKQFQEDRVRGVCARI 329
>gi|159905743|ref|YP_001549405.1| flap endonuclease-1 [Methanococcus maripaludis C6]
gi|159887236|gb|ABX02173.1| XPG I domain protein [Methanococcus maripaludis C6]
Length = 324
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 39 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 98
++ NL++M + +I +K L +G+P ++ E EAQCA L +
Sbjct: 109 KEQNNLEEMQKYAKRANFLDKKIIDNSKKLLELMGIPYIDAPSEGEAQCAELVKANDAFC 168
Query: 99 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS- 157
S D D L+GA V ++I + + E++ +L + LI +A+L+G+DY+
Sbjct: 169 VISQDYDSILYGAENVVKNITSSNKD-IELIELEKTLSELNVSLDQLIDVAILIGTDYNP 227
Query: 158 QGVRGLGPESACQIVK 173
G++G GP+ A VK
Sbjct: 228 GGLKGFGPKKAIDTVK 243
>gi|403414469|emb|CCM01169.1| predicted protein [Fibroporia radiculosa]
Length = 400
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
+ LGL +G+P + EAEAQCA L S D D F A +YR + E +
Sbjct: 136 RLLGL-MGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFSAPVLYRHLTFSEARK 194
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
+ +D L + I L +LLG DY + ++G+GP+SA ++V+ G+
Sbjct: 195 QPISEIHLDKALEGLEMNMSQFIDLCILLGCDYLEPIKGIGPKSALKLVREHGN 248
>gi|448568151|ref|ZP_21637728.1| flap endonuclease-1 [Haloferax lucentense DSM 14919]
gi|445727101|gb|ELZ78715.1| flap endonuclease-1 [Haloferax lucentense DSM 14919]
Length = 326
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 74 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD 133
VP +E E EAQ + + D S D D LFGA R L +G ++D
Sbjct: 146 VPVVEAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDLDA 203
Query: 134 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
K L+ +A+L G+D+++G+ G+GP++A ++V GD
Sbjct: 204 TLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGD 247
>gi|29467052|dbj|BAC66965.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|37496995|dbj|BAC98428.1| flap endonuclease-1b [Oryza sativa Japonica Group]
Length = 412
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI--WLGERGYVVCY 129
+GVP ++ EAEAQCA L S D D FGAR R + +R V +
Sbjct: 149 MGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEF 208
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
E+ + +LG + I L +L G DY + +RG+G + A ++++ G
Sbjct: 209 EVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHG 255
>gi|448600910|ref|ZP_21656289.1| flap endonuclease-1 [Haloferax alexandrinus JCM 10717]
gi|445734923|gb|ELZ86479.1| flap endonuclease-1 [Haloferax alexandrinus JCM 10717]
Length = 326
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 74 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD 133
VP +E E EAQ + + D S D D LFGA R L +G ++D
Sbjct: 146 VPVVEAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDLDA 203
Query: 134 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
K L+ +A+L G+D+++G+ G+GP++A ++V GD
Sbjct: 204 TLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGD 247
>gi|363755676|ref|XP_003648053.1| hypothetical protein Ecym_7411 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892089|gb|AET41236.1| hypothetical protein Ecym_7411 [Eremothecium cymbalariae
DBVPG#7215]
Length = 430
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 8/189 (4%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +G+P ++ EAEAQCA L + S D D + + R + E
Sbjct: 184 EAKKLLGLMGIPYVDAPSEAEAQCAELAKKGKVFAAASEDMDTLCYRTPYLLRHLTFSEA 243
Query: 124 GYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+E+D + + L + L ++LG DY + ++G+GP +A +++K G L
Sbjct: 244 RKEPIHEIDTELVLQGLDLTLEQFVDLGIMLGCDYCESIKGIGPVTALKLIKEHGS---L 300
Query: 182 QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPF-SQVIDAY 240
++I S AK E W+++ + +E L ++ V+ + +L+ E P ++I+
Sbjct: 301 EKIIEYIESGAANAKWKVPENWAYQ-DARELFLTPDV-VDADELTLKWEDPKEDELIEYM 358
Query: 241 SNPKCYSAD 249
K ++ D
Sbjct: 359 CKEKGFNED 367
>gi|126344550|ref|XP_001362314.1| PREDICTED: flap endonuclease 1-like [Monodelphis domestica]
Length = 380
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E K L +G+P LE EAEA CA L + D D FG+ + R + E
Sbjct: 140 ECKQLLRLMGIPYLEAPGEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 124 GYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + + + LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 200 KKLPIQEFHLSRVLQGLGLTQEQFVDLCILLGSDYCESIRGIGPKRAIDLIQ 251
>gi|387916082|gb|AFK11650.1| Flap endonuclease 1-B [Callorhinchus milii]
Length = 382
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L +G+P LE EAEA CA L G + D D FG + R + E
Sbjct: 139 EECKTLLTLMGIPYLEAPCEAEASCAALVKSGKVYGTATEDMDGLAFGTTILLRRMTASE 198
Query: 123 RGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + ++ I ++ G + I L +LLG DY + +RG+GP+ A ++++
Sbjct: 199 AKKLPIQEFHLNKILQETGLSQEEFIDLCILLGCDYCETIRGIGPKRAIELIR 251
>gi|398391356|ref|XP_003849138.1| hypothetical protein MYCGRDRAFT_111032 [Zymoseptoria tritici
IPO323]
gi|339469014|gb|EGP84114.1| hypothetical protein MYCGRDRAFT_111032 [Zymoseptoria tritici
IPO323]
Length = 677
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER---GYVVCYEMDDIERKL 138
E EA+CA L + D +S D D F+FG T+ + +G++ ++ Y+ I +L
Sbjct: 133 EGEAECARLQQLGIVDVVWSDDCDAFMFGCTTLIKQHKVGQKRVEDHIRVYKASTILEQL 192
Query: 139 GFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIV-KSVGDNVVLQRIASEGL 189
+SL+ ALL G DY + G+RG GP+ A + KS+G + + E L
Sbjct: 193 DMDADSLVLFALLSGGDYDETGLRGCGPQLAKVMAKKSLGLATQAKHMPKEDL 245
>gi|242813984|ref|XP_002486279.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
gi|218714618|gb|EED14041.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
Length = 399
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 8/173 (4%)
Query: 12 LRSLNGSIPAIK------LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEA 65
L +G+ P +K S +R + E ++ + M R +E
Sbjct: 86 LYVFDGAPPKLKGGELAKRSARKREAHEAHEEAKETGTAEDMEKFSRRTVRVTREHNEEC 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K L +GVP ++ EAEAQCA+L S D D F A + R + E+
Sbjct: 146 KKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRK 205
Query: 126 VVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
E +D LG R I L +LLG DY + + +GP +A ++++ G
Sbjct: 206 EPIQEIHLDKALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHG 258
>gi|389742999|gb|EIM84184.1| hypothetical protein STEHIDRAFT_82056 [Stereum hirsutum FP-91666
SS1]
Length = 953
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 95/249 (38%), Gaps = 45/249 (18%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI-- 118
M+ K + + G EAEA+ A LN + D +S D D FLFGA V R+
Sbjct: 106 MVDSMKGMIKAFGFEWRMAPGEAEAELAYLNETGVIDAVWSDDVDNFLFGATMVIRNSSK 165
Query: 119 --------------WLGERGYVVCYEMDDIERK--LGFGRNSLITLALLLGSDYSQ-GVR 161
L + + Y D I R + R +I +ALL G DY Q GV
Sbjct: 166 KLSGNKSHSTKNSDGLEDGNHTAVYRSDAISRHPSINLSRGGMILIALLSGGDYHQAGVT 225
Query: 162 GLGPESACQIVK-SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINV 220
G GP + + + +GD ++ S A GW +SL +E+
Sbjct: 226 GCGPGFSHGLARCGLGDQLL-----QAARSMDDNALQDFLVGW-------RQSLREELKT 273
Query: 221 NGTDH----------SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH--ARLH 268
N + + ++ P ++ +Y+NP S H+ Q + ++
Sbjct: 274 NASGYLPSKRPSLVKAVGNTFPDISILRSYTNPITSKTHSRTQHQP-PQWADEPDLGQIG 332
Query: 269 QVCAQFFQW 277
VC F+W
Sbjct: 333 HVCELHFEW 341
>gi|433418201|ref|ZP_20404929.1| flap endonuclease-1 [Haloferax sp. BAB2207]
gi|432199801|gb|ELK55943.1| flap endonuclease-1 [Haloferax sp. BAB2207]
Length = 326
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 74 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD 133
VP +E E EAQ + + D S D D LFGA R L +G ++D
Sbjct: 146 VPVVEAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQ--LTSKGNPELMDLDA 203
Query: 134 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
K L+ +A+L G+D+++G+ G+GP++A ++V GD
Sbjct: 204 TLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHGD 247
>gi|392566068|gb|EIW59244.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 406
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDK---------NLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K +R E +D++ ++D+ S + E + +
Sbjct: 86 FDGKPPELKSGVLSKRFEKREEAKEDNEEAKETGTAEDMDRFSRRTVKVTREHNEECR-- 143
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
+ LGL +G+P + EAEAQCA L S D D FGA +YR + E
Sbjct: 144 RLLGL-MGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILYRHLTFSEARK 202
Query: 126 VVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
E++ + G N L +LLG DY + ++G+GP+SA ++++ G
Sbjct: 203 TPISEINLQKALEGLEMNMSQFTELCILLGCDYLEPIKGVGPKSALKLIREHG 255
>gi|393225736|gb|EJD33645.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 603
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 35/245 (14%)
Query: 67 ALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR----DIWLGE 122
AL + G C + EAEA+ A LN D + SD+F+FGA T+ R D
Sbjct: 104 ALIEAFGFECHQAPGEAEAELAYLNNIGAIDAIWMDASDVFVFGALTILRSCASDTLSSN 163
Query: 123 RGYVVCY---EMDD-----------IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
R ++V + DD + + RN LI +ALL G DY + + + S
Sbjct: 164 RSHLVVTSEGKQDDNHVHVYCSTDLLVGSIQLDRNGLILIALLRGGDYHKVNQPISYISD 223
Query: 169 CQIVKSVGDNVVLQRIASE------GLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN- 221
C G N V +IA GLS ++ + + +S + QE+ +
Sbjct: 224 CIDACLQGVNGVGIKIAHALARCGFGLSLATAVQSLQHDEFSNALTQWRSEIVQELYTDS 283
Query: 222 ----GTDH-----SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA 272
G H + ++ P Q+ AY+ P ++ +AV R+ F A L +C
Sbjct: 284 RGQLGRRHQKLAANFPQDFPDLQIYRAYAQPITSGSNGDAV-RITWYRPFDLAALAGLCE 342
Query: 273 QFFQW 277
+F W
Sbjct: 343 HYFNW 347
>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
gi|317374900|sp|B0EN90.1|FEN1_ENTDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
Length = 376
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
E K L +G+PC+E EAE CA L C + D D G+ V R +
Sbjct: 141 EVKKLLQLMGIPCVEANCEAEGTCAALVKAGKCYATATEDMDALTLGSEYVVRKFSASDN 200
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + Y + I + GF I L +LLG DY ++G+GP +A ++++
Sbjct: 201 KKEPIREYSLSSILEETGFSMEQFIDLCILLGCDYCDTIKGVGPITAFELIQ 252
>gi|15679628|ref|NP_276745.1| flap endonuclease-1 [Methanothermobacter thermautotrophicus str.
Delta H]
gi|28380011|sp|O27670.1|FEN_METTH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|2622760|gb|AAB86106.1| DNA repair protein Rad2 [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 328
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S +++ +K L LG+P ++ E EAQ + + S D D LFGA V R++
Sbjct: 129 SEILESSKRLLELLGIPYVQAPGEGEAQASYMVKMGDAWAVASQDYDCLLFGAPRVVRNL 188
Query: 119 WL-GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
L G+ E++ R+L L+ +ALL+G+D+++GV+G+G ++++ GD
Sbjct: 189 TLSGKLEDPEIIELESTLRELSISHTQLVDMALLVGTDFNEGVKGIGARRGLKLIREKGD 248
>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
gi|317374879|sp|A8XL25.1|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 382
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 68 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV 127
LGL +G+P +E EAEAQCA L G + D D FG+ + R + E +
Sbjct: 145 LGL-MGIPVVEAPCEAEAQCANLVKAGKVYGTATEDMDALTFGSCVLLRHLLAPEAKKIP 203
Query: 128 C--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + ++ ++ I L +LLG DY +RG+GP+ A +++K
Sbjct: 204 IKEFHLARVLEEMQLTKDQFIDLCILLGCDYCGTIRGIGPKKAVELIK 251
>gi|254585117|ref|XP_002498126.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
gi|317376173|sp|C5DZA9.1|FEN1_ZYGRC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238941020|emb|CAR29193.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
Length = 379
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +G+P + EAEAQCA L + S D D + + R + E
Sbjct: 138 EAKYLLKLMGIPYIVAPCEAEAQCAQLAKDGKVYAAASEDMDTLCYKTPYLLRHLTFSEA 197
Query: 124 GYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+E+D + + L + + L ++LG DY + +RG+GP +A +++K G L
Sbjct: 198 KKEPIHEIDTELVLQGLELTQEQFVDLGIMLGCDYCESIRGIGPVTALKLIKEHGS---L 254
Query: 182 QRIASEGLSFVKRAKNSKK----EGWSFKCNNKEESLNQEINVNGTDHSLQRETP 232
++I + F++ + + K E W + ++ LN ++ VN D +L+ P
Sbjct: 255 EKI----VEFIESGQANNKWKVPEDWPYN-EARQLFLNPDV-VNSQDINLKWNPP 303
>gi|68488283|ref|XP_712017.1| hypothetical protein CaO19.8267 [Candida albicans SC5314]
gi|46433375|gb|EAK92818.1| hypothetical protein CaO19.8267 [Candida albicans SC5314]
Length = 684
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR-----------------DIWLGERG 124
E EAQCA L + D S D D +FGAR V R DI
Sbjct: 143 EGEAQCAYLQKLGIVDYVISQDVDALVFGARRVLRNFSRFAEDIGKSPPKSSDITARSSY 202
Query: 125 YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
YV +MD +E++ G + L+ LA L G DYS G + +G
Sbjct: 203 YVTPVDMDKVEQETGLATSRLVFLASLRGGDYSVGAKKMG 242
>gi|393232393|gb|EJD39975.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 400
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 131
+G+P + EAEAQCA L S D D FGA +YR + E E+
Sbjct: 149 MGIPVVIAPSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILYRHLTFSEAKKQPISEI 208
Query: 132 DDIERK---LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG--DNVV 180
D+++ L + I L LLLG DY + ++G+GP+SA + ++ +G D +V
Sbjct: 209 -DLQKALDGLNMTMDQFIELCLLLGCDYLEPIKGVGPKSALKYMREMGSLDKIV 261
>gi|308806964|ref|XP_003080793.1| FEN-1 (ISS) [Ostreococcus tauri]
gi|116059254|emb|CAL54961.1| FEN-1 (ISS) [Ostreococcus tauri]
Length = 428
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 32/216 (14%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
E L LG+P E EAEA CA + L + D D F A V R++ +
Sbjct: 180 EVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLVWAVGTEDMDTLTFAAPRVARNLMAPKS 239
Query: 124 GY--VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 180
V+ ++ + LG + I L +L G DY+ +RG+GP++A +++K G +
Sbjct: 240 AEKPVLEFDYEKTIAGLGLTADQFIDLCILCGCDYTDTIRGVGPKTALKLIKEHGSIEKI 299
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI-NVNGTDHSLQRETPFSQVIDA 239
L+ I +E K + W F +E N E+ +V+G + S +
Sbjct: 300 LEAIDTE--------KYPPPKDWEF-AGARELFKNPEVMDVSGINLSWK----------- 339
Query: 240 YSNPKCYSADSEA-VHRVLAQHLFQHARLHQVCAQF 274
+ D E V ++ + FQ R+ VCA+
Sbjct: 340 -------APDEEGLVEFLVKEKQFQEDRVRGVCARI 368
>gi|335433586|ref|ZP_08558406.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
gi|334898592|gb|EGM36696.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
Length = 326
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K LGL L VP ++ E EAQ A + D + D D LFGA R +
Sbjct: 139 KLLGL-LDVPIVDAPAEGEAQAAYMARRGDADYVGTEDYDALLFGAPYTLRQLTSSGDPE 197
Query: 126 VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
++ +E E L + L+ +ALL G+D+++GVRG GP++A + ++ GD
Sbjct: 198 LMDFEATLAEHDLSW--EQLVDVALLCGTDFNEGVRGYGPKTAVKAIREHGD 247
>gi|209879882|ref|XP_002141381.1| Flap endonuclease 1 [Cryptosporidium muris RN66]
gi|317374886|sp|B6AFP1.1|FEN1_CRYMR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|209556987|gb|EEA07032.1| Flap endonuclease 1, putative [Cryptosporidium muris RN66]
Length = 472
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY------ 125
LG+P +E EAEAQCA L E L G + D+D FG V R + + +
Sbjct: 150 LGIPVIEATSEAEAQCAELCKEGLVYGVATEDADSLTFGTPLVIRHLNFSDGKFSDSKGN 209
Query: 126 ----VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 177
+ ++ + LG + L +L G DY +RG+G +A +++K D
Sbjct: 210 SKNSLQVIKLSTVLSDLGLSMQQFVDLCILCGCDYCGTIRGIGALTAYKLLKKHKD 265
>gi|317376211|sp|B8MNF2.2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 8/173 (4%)
Query: 12 LRSLNGSIPAIK------LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEA 65
L +G+ P +K S +R + E ++ + M R +E
Sbjct: 82 LYVFDGAPPKLKGGELAKRSARKREAHEAHEEAKETGTAEDMEKFSRRTVRVTREHNEEC 141
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K L +GVP ++ EAEAQCA+L S D D F A + R + E+
Sbjct: 142 KKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRK 201
Query: 126 VVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
E +D LG R I L +LLG DY + + +GP +A ++++ G
Sbjct: 202 EPIQEIHLDKALEGLGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHG 254
>gi|325094624|gb|EGC47934.1| DNA repair protein RAD2 [Ajellomyces capsulatus H88]
Length = 359
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L +GVP ++ EAEAQCA+L S D D F + + R + E
Sbjct: 103 EECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSE 162
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ ++ +D + L R + L +LLG DY + +GP +A ++++ G
Sbjct: 163 QRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGS--- 219
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 225
L+++ E + + K + E W +K + L + +V DH
Sbjct: 220 LEQVV-EAIKSDPKKKYTIPEDWPYK---EARELFFDPDVRNADH 260
>gi|392563460|gb|EIW56639.1| hypothetical protein TRAVEDRAFT_73115 [Trametes versicolor
FP-101664 SS1]
Length = 1027
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 44/228 (19%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD---IWLGERG-------------Y 125
EAEA+ A LN + D S D D FLFGA+ V R+ G +G +
Sbjct: 125 EAEAELAYLNRIGVIDAVLSDDVDTFLFGAKMVIRNKNATLSGNKGQDMKNSAGKDDGNH 184
Query: 126 VVCYEMDDIERK--LGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVK-SVGDNVVL 181
+ Y DI + + + LI + +L G DY Q G+ G GP A + K GD
Sbjct: 185 AMVYRSSDILNREDIQLTQGGLILIGVLRGGDYCQEGLEGCGPALAHGLAKCGFGD---- 240
Query: 182 QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH----------SLQRET 231
+ + A+ +E + + + E+ N H S+ +
Sbjct: 241 --------TLLATARTKTREELEEFLDGWRDEIRAELRTNARGHLPRKSPKLSRSIPDDF 292
Query: 232 PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH--ARLHQVCAQFFQW 277
P V+ AY+NP A A + + ++ +C +F+W
Sbjct: 293 PNVDVVLAYTNPVTSEAKGRAYKNAVLNWDKEPDLGKIAGLCEMYFEW 340
>gi|190345282|gb|EDK37144.2| hypothetical protein PGUG_01242 [Meyerozyma guilliermondii ATCC
6260]
Length = 632
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR-------DIW-------LGERGYVV 127
EAEA+CA+L + D ++D+D+++FGA V R D++ + Y+V
Sbjct: 147 EAEAECAMLQRCGVVDYVVTNDTDVWVFGATKVLRNFNRYKEDVFSPLKKAPQDNKDYLV 206
Query: 128 C-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
M+ I G RN L+ +A L+G DYS G LG ++A +I
Sbjct: 207 TPVHMEKITENTGLDRNRLVLIATLMGGDYSSGTDRLGLQNAVKI 251
>gi|260941263|ref|XP_002614798.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
gi|238851984|gb|EEQ41448.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 10/176 (5%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMI------KEAKAL 68
+G P +K +RL + + ++L + ++ M E + EAK L
Sbjct: 50 FDGKPPVLKGGELEKRLLKRQDALKQIEDLKETGTVEELMKYEKRTVRASREQNDEAKKL 109
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 128
+G+P + EAEAQCA L S D D + + + R + + E +
Sbjct: 110 LELMGIPYIVAPSEAEAQCAELARAGKVFAAASEDMDTLCYEPKYLLRHLTVAEARKMPI 169
Query: 129 YEMD--DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG--DNVV 180
++D + + L R++ + L +LLG DY + ++G+GP +A +++K G DN+V
Sbjct: 170 DQIDYEAMLKGLDMDRSTFVDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIV 225
>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe 972h-]
gi|730469|sp|P39750.1|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
repair protein rad2; AltName: Full=Flap
structure-specific endonuclease 1
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe]
gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
EAK L +G+P + EAEAQCA L S D D F A + R + E
Sbjct: 141 EAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQ 200
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+ + Y ++ L + L +LLG DY + +RG+GP A ++++ G L
Sbjct: 201 RKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYG---TL 257
Query: 182 QRIASEGLSFVKRAKNSK---KEGWSF 205
R FVK A SK E W +
Sbjct: 258 DR-------FVKEADRSKYPIPEDWPY 277
>gi|341882587|gb|EGT38522.1| hypothetical protein CAEBREN_12338 [Caenorhabditis brenneri]
gi|341895701|gb|EGT51636.1| hypothetical protein CAEBREN_24192 [Caenorhabditis brenneri]
Length = 382
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 68 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV 127
LGL +G+P +E EAEAQCA L G + D D FG+ + R + E +
Sbjct: 145 LGL-MGIPVVEAPCEAEAQCAHLVKAGKVFGTATEDMDALTFGSSVLLRHLLAPESKKIP 203
Query: 128 C--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ + + ++ + I L +LLG DY +RG+GP+ A ++++
Sbjct: 204 IKEFHLARVLEEMKLSEDEFIDLCILLGCDYCGTIRGVGPKKAVELIR 251
>gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max]
gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|255640175|gb|ACU20378.1| unknown [Glycine max]
Length = 382
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQD---------DKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K +R + +E T+D ++++K S + + + +
Sbjct: 86 FDGKPPDLKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHN---DDC 142
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW--LGER 123
K L +GVP +E EAEAQCA L G S D D FGA R + ++
Sbjct: 143 KRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYGVVSEDMDSLTFGAPKFLRHLMDPSSKK 202
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
V+ +E+ I +L + I L +L G DY +RG+G +A ++++ G
Sbjct: 203 IPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHG 255
>gi|258573689|ref|XP_002541026.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
gi|237901292|gb|EEP75693.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
Length = 413
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L +G+P + EAEAQCA+L S D D F + + R + E
Sbjct: 157 EECKKLLKLMGIPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSE 216
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ ++ +D + LG R + + L +LLG DY + +GP +A ++++ D+
Sbjct: 217 QRKEPILEIHLDRVLEGLGMDRKTFVDLCILLGCDYLDPIPKVGPNTALKLIR---DHGS 273
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 225
L+++ E + + K + + W ++ + L E +V DH
Sbjct: 274 LEKVV-EAMKNDPKQKYTIPDDWPYE---QARDLFFEPDVRPADH 314
>gi|440301029|gb|ELP93476.1| Flap endonuclease, putative [Entamoeba invadens IP1]
Length = 374
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 21/203 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K ++R + E + D + + K M E S +K+
Sbjct: 86 FDGKPPEMKTEELKKRQTNAKEAIEKLEKAKESGDKEEIKKQMKRTARMTKEQSDDVKKL 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
L +G+P +E EAE CA L C + D D G+ V R + +
Sbjct: 146 VEL---MGIPAIEANCEAEGTCAELVKSGKCFATATEDMDALTLGSDIVLRKFSASDNKK 202
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+ Y + I + GF + I L +LLG DY + ++G+GP +A +++K +
Sbjct: 203 EPIREYSLKSILEETGFTMDMFIDLCILLGCDYCETIKGIGPVTAFEMIKEY-------K 255
Query: 184 IASEGLSFVKRAKNSKKEGWSFK 206
L + + K +GW +K
Sbjct: 256 TIENLLKHLDKGKYIVPDGWKYK 278
>gi|330928880|ref|XP_003302439.1| hypothetical protein PTT_14244 [Pyrenophora teres f. teres 0-1]
gi|311322221|gb|EFQ89464.1| hypothetical protein PTT_14244 [Pyrenophora teres f. teres 0-1]
Length = 790
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG------- 124
LG+P E EAEA+CA L + + D +S DSD +FG + D + +
Sbjct: 122 LGIPYHEAPGEAEAECARLQILDIVDAVWSQDSDALMFGCTFLLNDWRVAKEDGNEDRSK 181
Query: 125 --------YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
Y ++ G R ++ A+L+G DY ++G+ G GP Q VK
Sbjct: 182 ENTKKSGKYARVIRTHELRELHGLDREGMVLFAMLVGGDYDTKGLPGCGPSMGMQAVK 239
>gi|317374928|sp|C4YBJ8.2|FEN1_CLAL4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 376
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 10/176 (5%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMI------KEAKAL 68
+G P +K +RL + + ++L + ++ M E + EAK L
Sbjct: 86 FDGKPPVLKGGELEKRLLKRQDALKQIEDLKETGTVEELMKYEKRTVRASREQNDEAKKL 145
Query: 69 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 128
+G+P + EAEAQCA L S D D + + + R + + E +
Sbjct: 146 LELMGIPYIVAPSEAEAQCAELARAGKVFAAASEDMDTLCYEPKYLLRHLTVAEARKMPI 205
Query: 129 YEMD--DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG--DNVV 180
++D + + L R++ + L +LLG DY + ++G+GP +A +++K G DN+V
Sbjct: 206 DQIDYEAMLKGLDMDRSTFVDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIV 261
>gi|126179869|ref|YP_001047834.1| flap endonuclease-1 [Methanoculleus marisnigri JR1]
gi|166973702|sp|A3CWV2.1|FEN_METMJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|125862663|gb|ABN57852.1| flap endonuclease 1 [Methanoculleus marisnigri JR1]
Length = 333
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG----ERGYVV 127
LG+P ++ E EAQ A + + S D D LFG+ + R++ + RG +
Sbjct: 143 LGIPWVQAPSEGEAQAAYMARQGKVTYAVSQDYDSLLFGSPVLVRNLTVSGRRKTRGRTI 202
Query: 128 CYEMDDIE-----RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 174
+ I +LG R L+ + +L+G+D++ G+RG+G ++A +IV++
Sbjct: 203 TVNPERIVLSSFLDRLGVTREQLVKIGILVGTDFNPGIRGVGGKTALKIVRN 254
>gi|317376210|sp|C4JDR3.2|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L +G+P + EAEAQCA+L S D D F + + R + E
Sbjct: 139 EECKKLLKLMGIPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSE 198
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ ++ +D + LG R + + L +LLG DY + +GP +A ++++ D+
Sbjct: 199 QRKEPILEIHLDRVLEGLGMDRKTFVDLCILLGCDYLDPIPKVGPNTALKLIR---DHGS 255
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 225
L+++ E + + K + + W ++ + L E +V DH
Sbjct: 256 LEKVV-EAMKNDPKQKYTIPDDWPYE---QARDLFFEPDVRPADH 296
>gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana]
gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 383
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 72 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW--LGERGYVVCY 129
+GVP +E EAEAQCA L G S D D FGA R + + V+ +
Sbjct: 149 MGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEF 208
Query: 130 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
E+ I +L + I L +L G DY +RG+G ++A ++++ G
Sbjct: 209 EVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
>gi|391334775|ref|XP_003741776.1| PREDICTED: flap endonuclease 1-like [Metaseiulus occidentalis]
Length = 379
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 122
+A+ L +GVP L EAEAQCA L + D D FGA + R + E
Sbjct: 140 DAQRLLALMGVPFLVAPCEAEAQCAELVKAQKVYAAATEDMDCLTFGASVLLRHMTFSEA 199
Query: 123 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 181
+ + + + I +L F + I L +LLG DY ++G+GP+ A ++++S
Sbjct: 200 RKMPIKEFNLPKILAELNFTQREFIDLCILLGCDYCGTIKGIGPKRAIELMRS------- 252
Query: 182 QRIASEGLSFVKRAKNSKKEGWSF 205
R L + K E W F
Sbjct: 253 HRCIENVLKNIDTKKYPPPEDWQF 276
>gi|339253602|ref|XP_003372024.1| flap endonuclease 1a [Trichinella spiralis]
gi|316967624|gb|EFV52031.1| flap endonuclease 1a [Trichinella spiralis]
Length = 381
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
+ E K L +G+P +E EAEAQCA L + D D FG+ + R +
Sbjct: 148 VDECKRLLKLMGIPYIEAPCEAEAQCAALVKAKKVFAAATEDMDTLTFGSDIMLRYLTFS 207
Query: 122 E--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-N 178
E + + + DD+ L + +LLG DY ++G+GP+ A ++K +
Sbjct: 208 EAKKMPIKEFRFDDVLHGLNMTHEEFVDFCILLGCDYCPTIKGVGPKKAYDLIKQYRNLE 267
Query: 179 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNK 210
V+++++ + K E W +K K
Sbjct: 268 VIVEKL--------DKKKYPIPENWQYKAVRK 291
>gi|68488322|ref|XP_711995.1| hypothetical protein CaO19.652 [Candida albicans SC5314]
gi|46433350|gb|EAK92794.1| hypothetical protein CaO19.652 [Candida albicans SC5314]
Length = 684
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
SE++ + + K + + ++ E EAQCA L + D S D D +FGAR V
Sbjct: 117 SEYNPFVVQLKIELSNNKIEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFGARRVL 176
Query: 116 R-----------------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 158
R DI YV +MD +E++ G + L+ LA L G DYS
Sbjct: 177 RNFSRFAEDIGKSPPKSSDITARSSYYVTPVDMDKVEQETGLTTSRLVFLASLRGGDYSV 236
Query: 159 GVRGLG 164
G + +G
Sbjct: 237 GAKKMG 242
>gi|146419215|ref|XP_001485571.1| hypothetical protein PGUG_01242 [Meyerozyma guilliermondii ATCC
6260]
Length = 632
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 82 EAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR-------DIW-------LGERGYVV 127
EAEA+CA+L + D ++D+D+++FGA V R D++ + Y+V
Sbjct: 147 EAEAECAMLQRCGVVDYVVTNDTDVWVFGATKVLRNFNRYKEDVFSPLKKAPQDNKDYLV 206
Query: 128 C-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
M+ I G RN L+ +A L+G DYS G LG ++A +I
Sbjct: 207 TPVHMEKITENTGLDRNRLVLIATLMGGDYSSGTDRLGLQNAVKI 251
>gi|384485374|gb|EIE77554.1| hypothetical protein RO3G_02258 [Rhizopus delemar RA 99-880]
Length = 361
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 101 SSDSDIFLFGARTVYRDIWLGERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDYS-Q 158
+ DSD+FLFGAR V R W +R V CY++ I G R+ LI +ALL GSDY Q
Sbjct: 2 TGDSDVFLFGARRVIRQ-WPTKRNESVECYDLTWIADATGLDRSDLILIALLKGSDYDVQ 60
Query: 159 GVRGLGPESACQIVK 173
G +G+G + A + K
Sbjct: 61 GTQGIGIQVAVGLAK 75
>gi|401841744|gb|EJT44085.1| RAD27-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 380
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 29 RRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA 88
RR + ++ + L+KM RR + + K LGL +GVP + EAEAQCA
Sbjct: 104 RREETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGL-MGVPYIIAPTEAEAQCA 162
Query: 89 LLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLI 146
L + S D D + + R + E +E+D + R L +
Sbjct: 163 ELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFV 222
Query: 147 TLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVVLQRIASE 187
L ++LG DY + +RG+GP +A +++++ G +++ I SE
Sbjct: 223 DLCIMLGCDYCESIRGVGPVTALKLMRTHGSIEKIIEFIESE 264
>gi|448508200|ref|XP_003865895.1| Yen1 protein [Candida orthopsilosis Co 90-125]
gi|380350233|emb|CCG20454.1| Yen1 protein [Candida orthopsilosis Co 90-125]
Length = 616
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 74 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI--------------- 118
+ L+ EAEAQCA + + D ++D D +FGA V R+
Sbjct: 133 IEYLQAAGEAEAQCAYIQKLGIVDFVITNDVDSLIFGATQVLRNYSRFVEDIGHSPSKKS 192
Query: 119 -WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
L +R YV M IE G R L+ LA L G DYS GV+ +G +A
Sbjct: 193 ATLKQRYYVTPVNMKRIEEITGLNRARLVFLASLRGGDYSSGVKRMGITNA 243
>gi|225555317|gb|EEH03609.1| DNA-repair protein rad2 [Ajellomyces capsulatus G186AR]
Length = 359
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 63 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 122
+E K L +GVP ++ EAEAQCA+L S D D F + + R + E
Sbjct: 103 EECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSE 162
Query: 123 --RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ ++ +D + L R + L +LLG DY + +GP +A ++++ G
Sbjct: 163 QRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGS--- 219
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 225
L+++ E + + K + E W +K + L + +V DH
Sbjct: 220 LEQVV-EAIKSDPKKKYTIPEDWPYK---EARELFFDPDVRKADH 260
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,479,977,762
Number of Sequences: 23463169
Number of extensions: 301403321
Number of successful extensions: 819840
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 1051
Number of HSP's that attempted gapping in prelim test: 816602
Number of HSP's gapped (non-prelim): 2311
length of query: 523
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 376
effective length of database: 8,910,109,524
effective search space: 3350201181024
effective search space used: 3350201181024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)