BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009898
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2Z3|GENL2_ARATH Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2
SV=2
Length = 600
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 279/559 (49%), Positives = 374/559 (66%), Gaps = 51/559 (9%)
Query: 1 MKSYLHYSSALLRSLN--------GSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 52
++ + H AL+ +LN G+IP IK+ TY+RRL + E+ D K +SL+R
Sbjct: 54 LRGFFHRLRALI-ALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKR 112
Query: 53 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 112
NMGSEFSC+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFS DSDIFLFGA+
Sbjct: 113 NMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAK 172
Query: 113 TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 172
TVYR+I LGE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E AC++V
Sbjct: 173 TVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELV 232
Query: 173 KSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 232
+S+GDNV+L+++ASEGLSF ++ + SKK+ C+ K + +NG + +R
Sbjct: 233 RSIGDNVILEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GTLPLVVINGNNRDPERLEE 290
Query: 233 FSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292
QVIDA+ NPKC+ ADS V R LA+ FQ +L ++C QFF+WPPEKTDEYILPK+AE
Sbjct: 291 IKQVIDAFMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAE 350
Query: 293 RDLRRFANLRANTLALGVDLPLQK--VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKS 350
R+LRRFANL++ + + V+LPL K +P KCP++ IIK+RK+QG+ECFEVSW + GL+S
Sbjct: 351 RNLRRFANLQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLES 410
Query: 351 SVVPADLIESACPEKIVEFEERRALRQPKK---------SKPKSSAAEIDQKLQALMLDI 401
S+VPADL+E ACPEKI+EF+E+ A ++ K S P S++ ++ L+ LD+
Sbjct: 411 SIVPADLVERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDL 470
Query: 402 ESENSTSSNASFSSRVVMSEDWTAATEIDLTRRQDL-LLDAESKSNAN------------ 448
NST S SR + E + + + L L+D+ + N N
Sbjct: 471 ---NST----SLVSRSTLEEAEQENEQQNSKKHDYLRLIDSPDRENCNNAWSNRDRLGVG 523
Query: 449 MSCYPTGSTAAKAEIIDLVSPSP-VQCRNVSRI---REMSDQPINT-IELSDSETEKSPE 503
MS +P + E+IDL+SP P + R+VSR ++ D + T IELSDSET+ E
Sbjct: 524 MSSFP---LYPETEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSETDDE-E 579
Query: 504 LERKARALRMFIASIRDDI 522
+KAR LR+F+ +IR DI
Sbjct: 580 HCKKARELRIFLQNIRKDI 598
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica
GN=SEND1 PE=2 SV=1
Length = 641
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/445 (51%), Positives = 313/445 (70%), Gaps = 23/445 (5%)
Query: 1 MKSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQ--DDKNLDKMSSLRRNMGSEF 58
+++ L + LL +G+IP++KL+TYRRRL S S + D N SLRRN GSEF
Sbjct: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF 120
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
SCMIKEAK LG++LG+PCL+G+EEAEAQCA L+LESLCDGCF+SDSD FLFGARTVYRD+
Sbjct: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180
Query: 119 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 178
++GE GYV+CYEM+DIE+ LGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKSVGDN
Sbjct: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240
Query: 179 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 238
++L +I S G+ ++ K K G NK + + + + + + F VI+
Sbjct: 241 LILDQILSNGVKATRKCKG-KNSG------NKVDDMCPKASSCEVGMTQDSDGQFRDVIN 293
Query: 239 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 298
AY PKC+S DSEAV RV QH F +L ++C ++F W PEKTD+YILPKIAER+LRRF
Sbjct: 294 AYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRF 353
Query: 299 ANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 358
++LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+EVSW GL+ SVVP DL+
Sbjct: 354 SDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLV 413
Query: 359 ESACPEKIVEF---------EERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSS 409
+SACPEKI EF ++RRA +PKKS +++ ++D++LQ L+L IE+++
Sbjct: 414 KSACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDVDEQLQELLLGIEADSGGIL 470
Query: 410 NASFSSRVVMSEDWTAATE--IDLT 432
A+ S ++ +T A E +DL+
Sbjct: 471 GATASVCQTLTAAYTVAVEDVVDLS 495
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
Length = 1479
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 146/309 (47%), Gaps = 56/309 (18%)
Query: 45 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 104
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 909 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 968
Query: 105 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 164
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 969 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1027
Query: 165 PESACQIVKSVGDNVVLQRIASE---------GLSFVKRAKNSKKEGWSFKCNNK----- 210
+A ++V + + LQ+ G + K KK G S +NK
Sbjct: 1028 IVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRG-SASVDNKGIISG 1086
Query: 211 ------EE----SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 260
EE ++Q V+ H + P VI AY NP+ L+
Sbjct: 1087 ASTDDTEEIKQIFMDQHRKVSKNWH-IPLTFPSEAVISAYLNPQVD----------LSTE 1135
Query: 261 LFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANL 301
F + L ++C + F W +KTDE +LP + E + R RFA +
Sbjct: 1136 KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKI 1195
Query: 302 RANTLALGV 310
R+ + V
Sbjct: 1196 RSKRINKAV 1204
>sp|P07276|RAD2_YEAST DNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD2 PE=1 SV=2
Length = 1031
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 290
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2
Length = 908
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 67/378 (17%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVY 167
Query: 116 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 173
R+ + + +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 174 SVGDNVVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKE 211
+ +LQR +S L K+ K+ ++ G K +
Sbjct: 228 ILKGQSLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYC 287
Query: 212 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 271
E + E H + + S+V + C + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVI 346
Query: 272 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 315
FQ WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ-------- 398
Query: 316 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 364
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPE 451
Query: 365 KIVEFEERRALRQPKKSK 382
+ +++++ + KK K
Sbjct: 452 IVAVYQKQKLEIKGKKQK 469
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2
Length = 908
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 186/448 (41%), Gaps = 95/448 (21%)
Query: 3 SYL-HYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM 61
SYL + L+ + G P +K +R TQ S ++ S F +
Sbjct: 61 SYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 62 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 121
++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 122 ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 179
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 180 VLQRIAS----------------------------------EGLSFVKRAKNSKKEGWSF 205
+LQR G K K + + +
Sbjct: 234 LLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYDY 293
Query: 206 KCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 259
C + + +++ +++++++ PF +VI + K +++L
Sbjct: 294 LCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLKP 344
Query: 260 HLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPL 314
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 345 ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------- 397
Query: 315 QKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACP 363
P++ I+K R G C E+ WE E Y ++ ++ A L E+A P
Sbjct: 398 ---PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYP 449
Query: 364 EKIVEFE----ERRALRQPK-KSKPKSS 386
+ + ++ E + +Q K+KPK S
Sbjct: 450 DAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>sp|P28715|ERCC5_HUMAN DNA repair protein complementing XP-G cells OS=Homo sapiens
GN=ERCC5 PE=1 SV=3
Length = 1186
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 296
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 297 R 297
+
Sbjct: 988 Q 988
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus laevis
GN=ercc5 PE=2 SV=1
Length = 1196
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 26/233 (11%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L G+P + EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 801 MCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 859
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ DI +LG R+ LI LA LLGSDY++G+ +G SA +I
Sbjct: 860 SQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEI--------- 910
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L +GL + + KE WS E ++++ N D ++++ + ++
Sbjct: 911 LNEFPGQGLEPLVKF----KEWWS------EAQKDKKMRPNPNDTKVKKKLRLLDLQQSF 960
Query: 241 SNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 288
NP SA + V ++ F R + + C F W KTDE +LP
Sbjct: 961 PNPAVASAYLKPVVDE-SKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLP 1012
>sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad13 PE=2 SV=2
Length = 1112
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 17/257 (6%)
Query: 49 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 108
S +R+ MIKE + L G+P + +EAEAQC+ L L DG + DSD+FL
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFL 803
Query: 109 FGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 168
FG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP A
Sbjct: 804 FGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLA 862
Query: 169 CQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSL 227
+I+ GD GL K+ G + K N+ + + IN L
Sbjct: 863 LEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGKIIL 912
Query: 228 QRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 287
E P V +AY +P DS+ + L L Q W ++T+E +L
Sbjct: 913 PSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDL---DELRQFLMATVGWSKQRTNEVLL 967
Query: 288 PKIAERDLRRFANLRAN 304
P I + ++F ++N
Sbjct: 968 PVIQDMHKKQFVGTQSN 984
>sp|P35689|ERCC5_MOUSE DNA repair protein complementing XP-G cells homolog OS=Mus musculus
GN=Ercc5 PE=1 SV=4
Length = 1170
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 180
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 240
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 241 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 288
NP A V L+ + ++ C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYP 978
>sp|Q9LPD2|GENL1_ARATH Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2
SV=3
Length = 599
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 58 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 117
FS ++E L LG+P L+ EAEA CA LN + D C + DSD FLFGA V +D
Sbjct: 116 FSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKD 175
Query: 118 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 176
I R CY M IE LG R LI ++LL+G+DY S GV G+G + A +IV+
Sbjct: 176 IKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFS 235
Query: 177 DNVVLQRIASEG 188
++ VL+R+ G
Sbjct: 236 EDQVLERLQDIG 247
>sp|Q64MA3|GENL1_ORYSJ Flap endonuclease GEN-like 1 OS=Oryza sativa subsp. japonica GN=RAD
PE=2 SV=1
Length = 629
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA+TV
Sbjct: 122 AKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVI 181
Query: 116 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 174
+ + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A + V+
Sbjct: 182 KVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQL 241
Query: 175 VGDNVVLQRIASEG 188
++ VL ++ G
Sbjct: 242 FDEDNVLAKLYEIG 255
>sp|P61942|FEN_NANEQ Flap endonuclease 1 OS=Nanoarchaeum equitans (strain Kin4-M) GN=fen
PE=3 SV=1
Length = 339
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRR------LNSGSEVTQDDKNLDKMSSLRRNMGSEF 58
L Y + +G+ P K+ + +R L S + N+ + +++G
Sbjct: 70 LEYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAIKYAKSLGKLD 129
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M++EAK L ++G+P ++ E EA+ A L + + D C S D D LFG+ V R+I
Sbjct: 130 SYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSLLFGSPRVVRNI 189
Query: 119 WLGERG-------YV-VCYEMDDIERKLGF---GRNSLITLALLLGSDYSQGVRGLGPES 167
+ E+ YV V E+ ++E L + R LI +A+LLG+DY++ V G+GP++
Sbjct: 190 TISEKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGTDYNEKVPGIGPKT 249
Query: 168 ACQIVKSVGDNV 179
A +IVK GD +
Sbjct: 250 AIEIVKRFGDPI 261
>sp|Q9VRJ0|GEN_DROME Flap endonuclease GEN OS=Drosophila melanogaster GN=Gen PE=1 SV=1
Length = 726
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
S F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VY
Sbjct: 117 SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVY 176
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 177 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>sp|A8B672|FEN1_GIAIC Flap endonuclease 1 OS=Giardia intestinalis (strain ATCC 50803 / WB
clone C6) GN=FEN1 PE=3 SV=1
Length = 361
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 28 RRRLNSGSEVTQ----DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 83
RR+ +E+ Q ++ NL++ L R K+A+ L +LG+P + EA
Sbjct: 101 RRQAREAAELEQQKAEEEGNLERAKQLSRRTVKVTQQHCKQAERLLDTLGIPYVVAAGEA 160
Query: 84 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN 143
EAQC + E +C+G SSD D+ FG+ + R++ G +V ++ + ++LGF +
Sbjct: 161 EAQCVAMAKERVCEGVASSDLDVLAFGSPCLIRNLAQGGDREIVEINLNTVLKELGFSYD 220
Query: 144 SLITLALLLGSDYSQGVRGLGPESACQIV 172
+ L +L G DY+ + G+GP++A +++
Sbjct: 221 EFLDLCILCGCDYANSLEGIGPKTAYKLI 249
>sp|Q29FC1|GEN_DROPS Flap endonuclease GEN OS=Drosophila pseudoobscura pseudoobscura
GN=Gen PE=3 SV=1
Length = 754
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
+ F+ ++K+ + L LS+G+ C++G EAEA A LN L DG S DSD F +GA VY
Sbjct: 116 TRFNHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVY 175
Query: 116 RDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156
R+ + G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 176 RNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDY 223
>sp|Q980U8|FEN_SULSO Flap endonuclease 1 OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=fen PE=1 SV=2
Length = 349
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
+ M++E+K L ++G+P ++ E EA+ A LN L S D D LFGA+ + R++
Sbjct: 129 NIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNL 188
Query: 119 WL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPE 166
+ G+R YV E + + +KLG R LI + +L+G+DY+ G+RG+GPE
Sbjct: 189 TITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPE 248
Query: 167 SACQIVKSVG 176
A +I+K G
Sbjct: 249 RALKIIKKYG 258
>sp|A8AAC1|FEN_IGNH4 Flap endonuclease 1 OS=Ignicoccus hospitalis (strain KIN4/I / DSM
18386 / JCM 14125) GN=fen PE=3 SV=1
Length = 350
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 14/137 (10%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M++EAK L ++GVP ++ E EAQ A + + S D D LFG+ + R++ +
Sbjct: 135 MVEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQDYDSLLFGSPRLVRNLAV 194
Query: 121 GER------GYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
R V + ++I K LG R L+ +A+L+G+DY+ GV+G+GP++A
Sbjct: 195 SGRRKLPNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLIGTDYTPGVKGVGPKTAL 254
Query: 170 QIVKSVGDNVVLQRIAS 186
+ VKS GD L+R+ +
Sbjct: 255 RYVKSYGD---LERVLT 268
>sp|C9ZKW4|FEN1_TRYB9 Flap endonuclease 1 OS=Trypanosoma brucei gambiense (strain
MHOM/CI/86/DAL972) GN=FEN1 PE=3 SV=1
Length = 393
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S R + DD+ ++KMS +G + ++E
Sbjct: 89 FDGKPPTLKASELESRRQRAEDAKHEFEKAKEEGDDEAMEKMSKRMVRVGRD---QMEEV 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L +G+P ++ EAEAQCA L ++ + D D FG+R + R + GE +
Sbjct: 146 KTLLRLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALAFGSRVMLRHLTYGEAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+ Y +D+I GF I L +LLG DY + G+GP A + +K G
Sbjct: 206 RPIAEYHLDEILEASGFSMQQFIDLCILLGCDYVPRISGIGPHKAWEGIKKYG 258
>sp|Q57WW6|FEN1_TRYB2 Flap endonuclease 1 OS=Trypanosoma brucei brucei (strain 927/4
GUTat10.1) GN=FEN1 PE=3 SV=1
Length = 393
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S R + DD+ ++KMS +G + ++E
Sbjct: 89 FDGKPPTLKASELESRRQRAEDAKHEFEKAKEEGDDEAMEKMSKRMVRVGRD---QMEEV 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L +G+P ++ EAEAQCA L ++ + D D FG+R + R + GE +
Sbjct: 146 KTLLRLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALAFGSRVMLRHLTYGEAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 176
+ Y +D+I GF I L +LLG DY + G+GP A + +K G
Sbjct: 206 RPIAEYHLDEILEASGFSMQQFIDLCILLGCDYVPRISGIGPHKAWEGIKKYG 258
>sp|Q4JAN1|FEN_SULAC Flap endonuclease 1 OS=Sulfolobus acidocaldarius (strain ATCC 33909
/ DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=fen
PE=3 SV=2
Length = 349
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 12/125 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M++E+K L ++G+P ++ E EA+ A +N L S D D LFGA+ + R+I +
Sbjct: 131 MVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITI 190
Query: 121 -GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+R YV E++ + +KLG R LI +A+L+G+DY+ GV+G+G ++A
Sbjct: 191 SGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTA 250
Query: 169 CQIVK 173
+I+K
Sbjct: 251 LRIIK 255
>sp|Q976H6|FEN_SULTO Flap endonuclease 1 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=fen PE=3 SV=2
Length = 351
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M +E+K L ++G+P ++ E EA+ A +N+ L S D D LFGA+ + R++ L
Sbjct: 133 MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTL 192
Query: 121 -------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESA 168
G+ YV E+D + +KLG R LI + +++G+DY+ G++G G ++A
Sbjct: 193 SGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTA 252
Query: 169 CQIVKSVG 176
+I+K G
Sbjct: 253 YRIIKKYG 260
>sp|A6UX46|FEN_META3 Flap endonuclease 1 OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=fen PE=3 SV=1
Length = 326
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 15 LNGSIPAIKLSTY--RRRLNSGS----EVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKAL 68
+G P +KL T RR++ + E+ + ++N++ M + + + K L
Sbjct: 79 FDGKPPELKLKTREERRKVKEKASKDYEIAKREENIEDMQKYAKRINYLEPNTVDNCKKL 138
Query: 69 GLSLGVPCLEGVEEAEAQCALL--NLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYV 126
+G+P ++ E EAQCA + N ++ C S D D L+GA R+I + +
Sbjct: 139 LKLMGIPYIDAPSEGEAQCAHMIKNGDAYC--VVSQDYDALLYGAPRTVRNITASNKP-L 195
Query: 127 VCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQRIA 185
E++DI + L + LI +A+L+G+DY+ G++G+GP+ A I+K+ N ++ I
Sbjct: 196 ELMEIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIKNKKMNEYIKDI- 254
Query: 186 SEGLSFVKRA-KNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFS 234
E +K KN K ++ KE+ + N+ G L E FS
Sbjct: 255 -ENYEEIKNIFKNPKVVDYT-----KEDIKLKSPNIEGLKEFLIEENDFS 298
>sp|Q9YFY5|FEN_AERPE Flap endonuclease 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=fen PE=3 SV=3
Length = 350
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M++E+K L ++G+P ++ E EAQ A + + S D D LFG+ + R++
Sbjct: 132 SDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNL 191
Query: 119 WL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 166
+ G YV E++ + KLG R LI + +LLG+DY+ GVRG GP+
Sbjct: 192 AITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPK 251
Query: 167 SACQIVKSVGD 177
+A ++VKS+GD
Sbjct: 252 TALRLVKSLGD 262
>sp|Q4N3S6|FEN1_THEPA Flap endonuclease 1 OS=Theileria parva GN=FEN1 PE=3 SV=1
Length = 494
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M + AK L +GVP +E +EEAEAQCA L ++LC S D+D +FG + R++
Sbjct: 139 MNESAKKLLRLMGVPVIEALEEAEAQCAYLVTKNLCRFVASEDTDTLVFGGAFLLRNVAS 198
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
++ ++ + L F + I +L G DY + G+GP++A +VK
Sbjct: 199 SSSKKILKVDLQKVLDGLEFNFDQFIDFCILCGCDYCDTLEGVGPKTAYSLVK 251
>sp|Q4UFP0|FEN1_THEAN Flap endonuclease 1 OS=Theileria annulata GN=FEN1 PE=3 SV=1
Length = 506
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
M AK L +G+P +E +EEAEAQCA L ++LC S D+D +FG + R++
Sbjct: 139 MNDSAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLCHFVASEDTDTLVFGGWFLLRNVTS 198
Query: 121 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+V ++ + L F + + +L G DY + G+GP++A +VK
Sbjct: 199 SANKKIVKVDLQKVLDGLEFNFDQFVDFCILCGCDYCDTLEGVGPKTAYSLVK 251
>sp|Q0W6I0|FEN_UNCMA Flap endonuclease 1 OS=Uncultured methanogenic archaeon RC-I GN=fen
PE=3 SV=1
Length = 340
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ +AK L +G+P + E EAQ A + D S D D LFGA V R+I +
Sbjct: 130 IVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLLFGAPRVVRNIAI 189
Query: 121 GERGYVV-----------CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
+ V E+ ++ LG R LI +A+L+G+DY+ G+ +GP++A
Sbjct: 190 TGKRKVPRKNIYMDVKPEVIELQEVLATLGLTREELIDMAILVGTDYNPGIFKVGPKTAL 249
Query: 170 QIVKSVGDNV 179
++VK GDN+
Sbjct: 250 KLVKKHGDNM 259
>sp|A2BMI0|FEN_HYPBU Flap endonuclease 1 OS=Hyperthermus butylicus (strain DSM 5456 /
JCM 9403) GN=fen PE=3 SV=1
Length = 350
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 24/198 (12%)
Query: 5 LHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMG 55
+ + ++ +G P +K RR SE + D K + + + +
Sbjct: 72 MEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAVKKYEEAVKKGDTKAARRYAQMAARLT 131
Query: 56 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 115
E M+++AK L ++GVP ++ E EAQ A + S D D LFG+ +
Sbjct: 132 DE---MVEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDAWAAASQDYDSLLFGSPRLV 188
Query: 116 RDIWLGERG-------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGL 163
R++ + R YV E+D + + LG R L+ L +L+G+DY+ GV+G+
Sbjct: 189 RNLAITGRRKLPRKDVYVEIKPELIELDKLLKALGITREQLVALGILIGTDYNPDGVKGI 248
Query: 164 GPESACQIVKSVGDNVVL 181
GP++A ++VK+ D V L
Sbjct: 249 GPKTALKMVKAHRDPVKL 266
>sp|Q8PYF6|FEN_METMA Flap endonuclease 1 OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=fen PE=3
SV=1
Length = 338
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I+++K L +G+P ++ E EAQ A + L+ D S D D FLFGA TV R++
Sbjct: 131 IIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAA 190
Query: 121 -------GERGYV-VCYEMDDIERKL---GFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV V EM ++E L G R+ LI +A+ +G+DY++G+ +GP++A
Sbjct: 191 TGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTAL 250
Query: 170 QIVKSVGD 177
+++K G+
Sbjct: 251 KLIKKHGN 258
>sp|B8GIA0|FEN_METPE Flap endonuclease 1 OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=fen PE=3 SV=1
Length = 333
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I +K L +GVPC++ E EAQ A + S D D LFGA + R++ +
Sbjct: 132 IIATSKELLTLMGVPCVQAPSEGEAQAASMAASGAVTYAVSQDYDSLLFGAPLLVRNLTV 191
Query: 121 GER----GYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 171
+ G + + +D++ LG R LI +L+G+D++ G+RG+GP++A +I
Sbjct: 192 SSKRRVQGRTIAVQPESIRLDEVLGGLGITREQLIEAGILIGTDFNPGIRGVGPKTALKI 251
Query: 172 VKSVG 176
VK G
Sbjct: 252 VKKDG 256
>sp|A8M9L3|FEN_CALMQ Flap endonuclease 1 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=fen PE=3
SV=1
Length = 350
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M+ EAK L S+GVP ++ E EAQ A + + + S D D FLFGA + R++
Sbjct: 133 SDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQDYDSFLFGAPRLVRNL 192
Query: 119 WL-------GERGYVVC----YEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGP 165
+ G YV E++D+ + L R LI LA+LLG+DY+ +G+ G+GP
Sbjct: 193 TISGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAILLGTDYNPEGIPGIGP 252
Query: 166 ESACQIVKSVG 176
+ A ++++ G
Sbjct: 253 QRALRLIQEYG 263
>sp|Q97B98|FEN_THEVO Flap endonuclease 1 OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=fen PE=3
SV=1
Length = 335
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ + K L +G+P ++ E EAQ + + + DG S D D LFGA+ + R+ +
Sbjct: 130 IVNDTKELLTYMGIPYVDAPSEGEAQASYMTRKD-ADGVISQDYDCLLFGAKKILRNFAI 188
Query: 121 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G R Y Y +D++ +K G ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNVYRTVYPEYVMLDEVLKKNGINQDQLIEIGILVGTDFNEGIKGIGAKKAL 248
Query: 170 QIVKSVGD-NVVLQRIA 185
++K G+ VL +I
Sbjct: 249 ALIKKEGNIKAVLNKIG 265
>sp|C5A639|FEN_THEGJ Flap endonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229
/ JCM 11827 / EJ3) GN=fen PE=3 SV=1
Length = 339
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +GVP ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 TLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAPRLVRNLT 189
Query: 120 LGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ R G V E ++++ R+LG R LI LA+L+G+DY+ G++G+GP+
Sbjct: 190 ITGRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVGTDYNPGGIKGIGPKK 249
Query: 168 ACQIVKSVGD 177
A IVK D
Sbjct: 250 ALTIVKRSKD 259
>sp|Q4DKQ5|FEN1_TRYCC Flap endonuclease 1 OS=Trypanosoma cruzi (strain CL Brener) GN=FEN1
PE=3 SV=1
Length = 393
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 21/203 (10%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S + R E Q +D+ ++KMS + E ++EA
Sbjct: 89 FDGKPPTLKASELQERRQRAEEAQQLFDTAKEEGNDELMEKMSKRTVRVSRE---QLEEA 145
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--R 123
K L +G+P ++ EAEAQCA L + + D D FGA + R + E +
Sbjct: 146 KKLLQLMGIPVVQAPSEAEAQCAELVKKKKAWAVATEDMDALTFGAPVMLRHLTYSEAKK 205
Query: 124 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR 183
+ + +D+I G I L +LLG DY + G+GP+ A + +K GD L
Sbjct: 206 RPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVPKIPGIGPQKAWEGIKKHGDIETL-- 263
Query: 184 IASEGLSFVKRAKNSKKEGWSFK 206
L + ++S EG+ ++
Sbjct: 264 -----LQSLDAGRHSVPEGFHYE 281
>sp|Q5JGN0|FEN_PYRKO Flap endonuclease 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=fen PE=3 SV=1
Length = 340
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I +AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNLTI 190
Query: 121 GER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 168
R G V E ++++ ++LG R LI LA+L+G+DY+ G++G+GP+ A
Sbjct: 191 TGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKA 250
Query: 169 CQIVKSVGD 177
IVK D
Sbjct: 251 LTIVKRTKD 259
>sp|A5UL52|FEN_METS3 Flap endonuclease 1 OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=fen PE=3 SV=1
Length = 327
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+I+ +K L +G+P +E E EAQ A L S D D LFGA+ V R++ +
Sbjct: 131 IIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAI 190
Query: 121 GER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
G + Y + + +L R LI + +L+G+D+S+G++G+G ++A ++ K
Sbjct: 191 NSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAK 244
>sp|A3MY15|FEN_PYRCJ Flap endonuclease 1 OS=Pyrobaculum calidifontis (strain JCM 11548 /
VA1) GN=fen PE=3 SV=1
Length = 346
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 59 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 118
S M+++AK L +G+P ++ E EAQ A + C S D D LFG+ + R++
Sbjct: 133 SEMVEDAKKLLTYMGIPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNL 192
Query: 119 WLGERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGSDYS-QGVRGLGPES 167
+ + V E+D + + L GR LI LA+LLG+DY+ +GV G+GP+
Sbjct: 193 AVSPKRKVGEEVVELSPELIELDAVLKSLKLKGREQLIDLAILLGTDYNPEGVPGVGPQK 252
Query: 168 ACQIVKSVGDNVVLQRIASEGLSF 191
A +++ G L + +G+ F
Sbjct: 253 ALKLIWEFGSLEKLLQTVLKGVQF 276
>sp|D3TQJ5|FEN1_GLOMM Flap endonuclease 1 OS=Glossina morsitans morsitans GN=Fen1 PE=2
SV=1
Length = 382
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 123
EAK L +GVP +E EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSGILLRHLTFSEA 199
Query: 124 GYVVCYEMDDIERKLGFGRNS--LITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 180
+ E + GFG S I L +LLG DY G+RG+GP+ A +++ S D +
Sbjct: 200 RKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIRGIGPKRATELMNSYKDIETI 259
Query: 181 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI 218
L++I R K + E W+++ +E +N E+
Sbjct: 260 LEKI--------DRKKYTVPEDWNYQI-ARELFVNPEV 288
>sp|Q6L2I9|FEN_PICTO Flap endonuclease 1 OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=fen PE=3 SV=1
Length = 338
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR------TV 114
++ E+K L +G+P ++ E EAQ + + L+ + S D D LFGA+ TV
Sbjct: 131 IVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDYDCLLFGAKRILRNFTV 190
Query: 115 Y--RDIWLGERGYVVCYEMDDIERKL---GFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
Y R I R V E+ D+ L G R LI + +L G+D++ GV+G+G ++A
Sbjct: 191 YGRRRIAGTSRTINVNPEIIDLNENLSNLGISREQLIYIGILTGTDFNPGVKGIGAKTAL 250
Query: 170 QIVKSVGDNVVLQRIASEGL 189
++K D + +I + G+
Sbjct: 251 SLIKKYNDIYSVIKIKNIGI 270
>sp|O50123|FEN_PYRHO Flap endonuclease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=fen PE=1
SV=1
Length = 343
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 12/126 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 MLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G V E +D++ ++L R LI LA+L+G+DY+ GV+G+GP+
Sbjct: 190 ITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKK 249
Query: 168 ACQIVK 173
A +IV+
Sbjct: 250 ALEIVR 255
>sp|Q46D63|FEN_METBF Flap endonuclease 1 OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=fen PE=3 SV=1
Length = 338
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+++++K L +G+P ++ E EAQ A + L+ D S D D FLFGA TV R++ +
Sbjct: 131 IVEDSKYLLSIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPTVIRNLAV 190
Query: 121 -GERGYVVCYEMDDIERK----------LGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+R + D+E + LG R LI +A+ +G+D+++G+ +GP++A
Sbjct: 191 TGKRKLPGKHVYVDVELELIELEETLGVLGINREQLIDIAICVGTDFNKGLEKVGPKTAL 250
Query: 170 QIVKSVGD 177
+++K GD
Sbjct: 251 KLIKKHGD 258
>sp|B6YWX4|FEN_THEON Flap endonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=fen
PE=3 SV=1
Length = 341
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 47 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
M + R N G +I +AK L +G+P ++ E EAQ A + + S D D
Sbjct: 122 MRATRVNEG-----LINDAKTLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDS 176
Query: 107 FLFGARTVYRDIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSD 155
LFGA + R++ + R G V E ++++ ++L R LI +A+L+G+D
Sbjct: 177 LLFGAPKLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLKELSIDREKLIEMAILVGTD 236
Query: 156 YSQ-GVRGLGPESACQIVKSVGD 177
Y+ G++G+GP+ A IVK D
Sbjct: 237 YNPGGIKGIGPKKALTIVKRTKD 259
>sp|C6A1U9|FEN_THESM Flap endonuclease 1 OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=fen PE=3 SV=1
Length = 340
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 119
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++
Sbjct: 130 ILIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLT 189
Query: 120 L-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 167
+ G+R G V E ++D+ ++L R LI LA+L+G+DY+ G++GLGP+
Sbjct: 190 ITGKRKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKK 249
Query: 168 ACQIVKSVGD 177
A +IVK D
Sbjct: 250 ALEIVKYSKD 259
>sp|O29975|FEN_ARCFU Flap endonuclease 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=fen PE=1
SV=1
Length = 336
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ AK L +G+P ++ E EAQ A + + + S D D LFG+ + R++ +
Sbjct: 130 IVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAI 189
Query: 121 -------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV V E+ +E ++LG R LI +A+L+G+DY++GV+G+G + A
Sbjct: 190 TGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKAL 249
Query: 170 QIVKSVGD 177
+K+ GD
Sbjct: 250 NYIKTYGD 257
>sp|Q75DS8|FEN1_ASHGO Flap endonuclease 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=FEN1 PE=3 SV=2
Length = 378
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 15/200 (7%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL----RRNMGSEFSCMIKEAKALGL 70
+G P +K +R E Q L + + + RR + E + + K LGL
Sbjct: 86 FDGKPPVLKAHELDKRTERRKETEQKLAELTEQAEIMKHERRLVKVEQWHVAEAKKLLGL 145
Query: 71 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 130
+G+P ++ EAEAQCA L + S D D + + R + E +E
Sbjct: 146 -MGIPYVDAPGEAEAQCAELAKKGKVFAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHE 204
Query: 131 MDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG--DNVVLQRIAS 186
+D + + LG + L+ L ++LG DY + ++G+GP +A +++K G +N+V + I+S
Sbjct: 205 IDTELVLQGLGLSQEQLVDLGIMLGCDYCESIKGVGPVTALKLIKEHGSLENIV-EFISS 263
Query: 187 EGLSFVKRAKNSKKEGWSFK 206
G AK E W +K
Sbjct: 264 GG-----NAKWKVPENWPYK 278
>sp|Q8TIY5|FEN_METAC Flap endonuclease 1 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=fen PE=3 SV=1
Length = 338
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 14/148 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
+++++K L +G+P ++ E EAQ A + L+ D S D D FLFGA V R++ +
Sbjct: 131 IVEDSKYLLGIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPKVVRNMAV 190
Query: 121 -------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G+ YV E+++ R L R+ LI +A+ +G+DY++G+ +GP++A
Sbjct: 191 TGKRKLPGKNVYVDVELEVIELEETLRALEINRDQLIDIAICVGTDYNKGLEKVGPKTAL 250
Query: 170 QIVKSVGD-NVVLQR--IASEGLSFVKR 194
+++K GD + VL+ + EGL +++
Sbjct: 251 KLIKKHGDIHAVLREKDMEIEGLDRIRK 278
>sp|A8QCH0|FEN1_BRUMA Flap endonuclease 1 OS=Brugia malayi GN=FEN1 PE=3 SV=1
Length = 378
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 15 LNGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEA 65
+G P +K S +R +E + D+ +++K + E S +EA
Sbjct: 85 FDGKPPQMKTSELEKRTERRTEAEKQRNDAVELGDETSVNKFEKRLVKVTKEQS---EEA 141
Query: 66 KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGY 125
K L +G+P L+ EAEAQCA L S D D FG+ + R + E
Sbjct: 142 KRLVTLMGIPVLDAPCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASEAKK 201
Query: 126 VVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 173
+ EM + + + G + L +LLG DY +RG+GP+ A +++K
Sbjct: 202 LPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRGIGPKKAFELIK 251
>sp|Q9HJD4|FEN_THEAC Flap endonuclease 1 OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=fen
PE=3 SV=1
Length = 336
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 61 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 120
++ + K L +G+P ++ E EAQ + + +++ DG S D D LFGAR + R+ +
Sbjct: 130 IVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKNV-DGVISQDYDCLLFGARKILRNFAI 188
Query: 121 -GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
G R Y Y +D++ ++ LI + +L+G+D+++G++G+G + A
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKAL 248
Query: 170 QIVKSVGD-NVVLQRIA 185
++K GD VL+ I
Sbjct: 249 ALIKKEGDIKSVLKHIG 265
>sp|A2SQC6|FEN_METLZ Flap endonuclease 1 OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=fen PE=3 SV=1
Length = 333
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 28/196 (14%)
Query: 6 HYSSALLRSLN-------------GSIPAIKLSTYRRRL----NSGSEVTQDDKNLDKMS 48
H S L R+ N G P K ST +R N+ + K D+ S
Sbjct: 58 HLSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENAADAWEKALKEGDEES 117
Query: 49 SLRRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 106
+ + M S + +I +K L +LG+ ++ EE EAQ + + S D D
Sbjct: 118 ARKYAMASSKIDAFIIDSSKELLSALGIAWIQAPEEGEAQSSFMTKNGDVTYAVSQDYDS 177
Query: 107 FLFGARTVYRDIWLGE----RGYVVCY-----EMDDIERKLGFGRNSLITLALLLGSDYS 157
LFGA + R+I + RG V+ ++++ L + LI +ALL+G+DY+
Sbjct: 178 LLFGAPDLVRNITVSGKKRIRGKVLSVYPERLRLEEVLTGLSVTQEELIQIALLIGTDYN 237
Query: 158 QGVRGLGPESACQIVK 173
GV G+GP++A +IV+
Sbjct: 238 SGVPGVGPKTAVKIVR 253
>sp|B3L014|FEN1_PLAKH Flap endonuclease 1 OS=Plasmodium knowlesi (strain H) GN=FEN1 PE=3
SV=1
Length = 595
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 64 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG-- 121
EAK L +G+P +E EAE+QCA L +L + D+D +FG + + R++
Sbjct: 142 EAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAS 201
Query: 122 -----------ERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 169
+RGY++ ++ + + L N I +L G DY ++G+G ++A
Sbjct: 202 STSQNKNKNSSKRGYILTEINLEQVLKGLNLNMNEFIDFCILCGCDYCDTIKGIGSKTAY 261
Query: 170 QIVK 173
++K
Sbjct: 262 NLIK 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,706,788
Number of Sequences: 539616
Number of extensions: 7390507
Number of successful extensions: 22370
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 21905
Number of HSP's gapped (non-prelim): 275
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)