Query 009898
Match_columns 523
No_of_seqs 314 out of 1608
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ory_A Flap endonuclease 1; hy 100.0 8.6E-48 2.9E-52 401.2 12.5 247 3-295 81-346 (363)
2 3q8k_A Flap endonuclease 1; he 100.0 6.6E-46 2.3E-50 384.1 20.3 249 3-292 72-330 (341)
3 1b43_A Protein (FEN-1); nuclea 100.0 1E-45 3.5E-50 381.9 13.0 242 2-293 66-326 (340)
4 2izo_A FEN1, flap structure-sp 100.0 3.4E-45 1.2E-49 379.1 14.9 249 3-294 64-331 (346)
5 1a76_A Flap endonuclease-1 pro 100.0 9.3E-44 3.2E-48 365.4 15.1 238 3-294 67-313 (326)
6 1ul1_X Flap endonuclease-1; pr 100.0 1.2E-43 4E-48 371.9 10.5 249 3-291 72-329 (379)
7 1rxw_A Flap structure-specific 100.0 8.1E-43 2.8E-47 359.7 16.1 241 3-292 67-325 (336)
8 3qe9_Y Exonuclease 1; exonucle 100.0 3.9E-40 1.3E-44 342.3 15.1 183 2-186 64-259 (352)
9 1exn_A 5'-exonuclease, 5'-nucl 100.0 1.6E-30 5.3E-35 263.5 10.7 171 10-195 61-245 (290)
10 1bgx_T TAQ DNA polymerase; DNA 100.0 7.9E-31 2.7E-35 298.1 -5.3 162 4-187 55-224 (832)
11 3h7i_A Ribonuclease H, RNAse H 99.7 1.2E-17 4E-22 169.4 4.5 139 7-166 62-211 (305)
12 3lwe_A M-phase phosphoprotein 97.3 0.00013 4.5E-09 57.3 3.7 56 322-378 6-61 (62)
13 1ap0_A Modifier protein 1; chr 97.1 0.00021 7E-09 58.0 2.8 54 322-377 15-68 (73)
14 3mts_A Histone-lysine N-methyl 97.1 9.2E-05 3.1E-09 58.7 0.6 52 323-376 3-54 (64)
15 2y35_A LD22664P; hydrolase-DNA 97.0 0.00072 2.5E-08 79.4 7.3 94 73-166 162-299 (1140)
16 3f2u_A Chromobox protein homol 96.9 0.00043 1.5E-08 53.0 2.8 50 322-373 4-53 (55)
17 2kvm_A Chromobox protein homol 96.8 0.00068 2.3E-08 55.0 3.5 54 322-377 15-68 (74)
18 3fdt_A Chromobox protein homol 96.8 0.00052 1.8E-08 53.4 2.7 51 323-375 6-56 (59)
19 1pfb_A Polycomb protein; chrom 96.8 0.00051 1.7E-08 52.6 2.3 48 323-372 6-53 (55)
20 3i91_A Chromobox protein homol 96.8 0.0007 2.4E-08 51.6 3.0 48 323-372 6-53 (54)
21 2d9u_A Chromobox protein homol 96.8 0.0013 4.3E-08 53.5 4.6 61 322-384 12-72 (74)
22 3h91_A Chromobox protein homol 96.6 0.00094 3.2E-08 50.9 2.8 48 323-372 6-53 (54)
23 1g6z_A CLR4 protein; transfera 96.5 0.0021 7.3E-08 51.5 4.3 54 322-376 10-65 (70)
24 1q3l_A Heterochromatin protein 96.5 0.0015 5.2E-08 52.5 3.3 50 322-373 18-67 (69)
25 2dnt_A Chromodomain protein, Y 96.4 0.0024 8.2E-08 52.3 4.3 60 322-383 15-75 (78)
26 3pie_A 5'->3' exoribonuclease 96.4 0.0033 1.1E-07 73.5 6.6 94 73-166 163-302 (1155)
27 1pdq_A Polycomb protein; methy 96.4 0.0017 5.8E-08 52.7 2.8 49 322-372 22-70 (72)
28 3fqd_A Protein DHP1, 5'-3' exo 96.3 0.0091 3.1E-07 68.1 8.9 93 73-165 195-349 (899)
29 2k1b_A Chromobox protein homol 96.0 0.0024 8.2E-08 51.9 1.9 49 322-372 23-71 (73)
30 3g7l_A Chromo domain-containin 95.8 0.008 2.7E-07 46.9 4.2 50 322-373 9-59 (61)
31 2dnv_A Chromobox protein homol 95.4 0.005 1.7E-07 48.5 1.5 50 322-373 12-61 (64)
32 2rso_A Chromatin-associated pr 95.1 0.02 6.8E-07 48.4 4.6 54 321-375 31-87 (92)
33 2rsn_A Chromo domain-containin 95.0 0.019 6.5E-07 46.7 4.0 51 322-373 23-74 (75)
34 4hae_A CDY-like 2, chromodomai 93.6 0.0071 2.4E-07 50.0 -1.5 52 322-374 25-77 (81)
35 1x3p_A Cpsrp43; chromo-2 domai 90.7 0.036 1.2E-06 42.3 -0.6 45 323-372 3-49 (54)
36 2epb_A Chromodomain-helicase-D 89.9 0.19 6.5E-06 40.0 3.0 49 322-373 13-67 (68)
37 2a1j_A DNA repair endonuclease 89.9 0.2 6.8E-06 39.1 3.1 22 158-179 7-28 (63)
38 1ixr_A Holliday junction DNA h 89.0 0.22 7.6E-06 47.2 3.2 32 159-190 76-107 (191)
39 1x2i_A HEF helicase/nuclease; 88.6 0.33 1.1E-05 37.9 3.5 21 158-178 17-37 (75)
40 3kup_A Chromobox protein homol 88.0 0.66 2.2E-05 36.6 4.8 49 323-373 15-63 (65)
41 1kft_A UVRC, excinuclease ABC 88.0 0.22 7.4E-06 40.0 2.1 21 158-178 27-47 (78)
42 1cuk_A RUVA protein; DNA repai 87.7 0.35 1.2E-05 46.3 3.7 32 159-190 77-108 (203)
43 1z00_A DNA excision repair pro 87.7 0.36 1.2E-05 39.5 3.3 21 158-178 22-42 (89)
44 2ztd_A Holliday junction ATP-d 87.6 0.18 6E-06 48.8 1.6 52 135-192 73-125 (212)
45 1z00_B DNA repair endonuclease 87.0 0.48 1.7E-05 39.2 3.7 21 159-179 22-42 (84)
46 2a1j_B DNA excision repair pro 86.0 0.5 1.7E-05 39.0 3.3 20 159-178 36-55 (91)
47 2b2y_A CHD-1, chromodomain-hel 84.6 0.61 2.1E-05 44.1 3.5 51 322-372 132-185 (187)
48 2h1e_A Chromo domain protein 1 84.0 0.5 1.7E-05 44.3 2.6 51 322-372 122-177 (177)
49 2ee1_A Chromodomain helicase-D 83.9 0.73 2.5E-05 36.3 3.1 50 322-371 13-63 (64)
50 2fmm_A Chromobox protein homol 83.1 1.1 3.9E-05 36.1 4.1 49 323-373 18-66 (74)
51 3i3c_A Chromobox protein homol 82.6 1.1 3.9E-05 36.3 3.9 48 323-372 25-72 (75)
52 3q6s_A Chromobox protein homol 79.8 1.8 6.1E-05 35.4 4.2 50 323-374 12-61 (78)
53 2nrt_A Uvrabc system protein C 79.3 1.1 3.7E-05 43.5 3.2 22 158-179 171-192 (220)
54 3p7j_A Heterochromatin protein 74.9 2.7 9.3E-05 35.1 4.0 50 323-374 28-77 (87)
55 2bgw_A XPF endonuclease; hydro 67.1 3.4 0.00011 39.1 3.3 20 159-178 166-185 (219)
56 3c65_A Uvrabc system protein C 65.6 1.3 4.4E-05 43.2 0.0 22 158-179 176-197 (226)
57 2b2y_C CHD-1, chromodomain-hel 57.6 6.3 0.00022 34.5 2.9 52 325-376 47-101 (115)
58 2b2y_A CHD-1, chromodomain-hel 53.0 10 0.00034 35.7 3.8 50 326-375 48-100 (187)
59 2duy_A Competence protein come 48.8 8 0.00027 30.3 2.0 18 158-175 30-47 (75)
60 4gfj_A Topoisomerase V; helix- 46.9 12 0.00042 39.7 3.5 21 159-179 472-492 (685)
61 3vdp_A Recombination protein R 45.9 24 0.00084 33.9 5.2 16 159-174 30-45 (212)
62 1vdd_A Recombination protein R 40.6 33 0.0011 33.4 5.2 16 159-174 16-31 (228)
63 2ztd_A Holliday junction ATP-d 36.0 17 0.00059 34.8 2.5 21 157-177 125-145 (212)
64 1ixr_A Holliday junction DNA h 34.6 18 0.00062 34.0 2.4 22 155-176 107-128 (191)
65 1s5l_U Photosystem II 12 kDa e 31.6 22 0.00076 31.8 2.3 15 159-173 67-81 (134)
66 2owo_A DNA ligase; protein-DNA 31.4 25 0.00087 39.2 3.2 20 159-178 516-535 (671)
67 1vq8_Y 50S ribosomal protein L 31.0 10 0.00035 37.0 0.0 22 158-179 18-40 (241)
68 3arc_U Photosystem II 12 kDa e 30.3 23 0.0008 29.8 2.1 15 159-173 30-44 (97)
69 2ziu_A MUS81 protein; helix-ha 30.0 33 0.0011 34.0 3.6 29 159-187 241-270 (311)
70 2w9m_A Polymerase X; SAXS, DNA 29.9 32 0.0011 37.4 3.6 26 158-183 100-127 (578)
71 3sgi_A DNA ligase; HET: DNA AM 28.9 12 0.0004 41.5 0.0 21 159-179 533-553 (615)
72 1ufm_A COP9 complex subunit 4; 27.9 1E+02 0.0034 25.0 5.5 43 65-111 33-75 (84)
73 2edu_A Kinesin-like protein KI 27.9 29 0.00099 28.6 2.3 18 158-175 43-60 (98)
74 3b0x_A DNA polymerase beta fam 27.3 38 0.0013 36.7 3.7 26 159-184 97-125 (575)
75 2h1e_A Chromo domain protein 1 26.8 42 0.0014 31.1 3.4 39 336-375 47-87 (177)
76 1dgs_A DNA ligase; AMP complex 25.8 33 0.0011 38.3 2.8 20 159-178 511-530 (667)
77 4glx_A DNA ligase; inhibitor, 24.4 47 0.0016 36.4 3.7 38 64-101 241-289 (586)
78 1cuk_A RUVA protein; DNA repai 24.3 34 0.0012 32.4 2.3 19 157-175 110-128 (203)
79 2fmp_A DNA polymerase beta; nu 23.9 32 0.0011 34.9 2.2 17 158-174 101-117 (335)
80 2ihm_A POL MU, DNA polymerase 23.6 33 0.0011 35.2 2.2 16 159-174 106-121 (360)
81 1jms_A Terminal deoxynucleotid 23.0 34 0.0012 35.4 2.2 16 159-174 125-140 (381)
82 2bcq_A DNA polymerase lambda; 22.6 35 0.0012 34.6 2.2 17 158-174 99-115 (335)
83 2i5h_A Hypothetical protein AF 21.6 39 0.0013 32.3 2.1 37 138-174 110-151 (205)
84 2xry_A Deoxyribodipyrimidine p 21.5 1.2E+02 0.0039 32.0 6.0 42 60-101 92-133 (482)
85 3maj_A DNA processing chain A; 21.1 65 0.0022 33.5 3.8 40 140-185 17-57 (382)
86 2e62_A Protein AT5G25060; CWF2 20.4 70 0.0024 24.9 2.9 28 495-522 5-32 (61)
87 3n0u_A Probable N-glycosylase/ 20.1 44 0.0015 32.0 2.1 18 159-176 134-151 (219)
No 1
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=8.6e-48 Score=401.16 Aligned_cols=247 Identities=20% Similarity=0.299 Sum_probs=212.2
Q ss_pred hhhhcCcEEEEEEcCCCCchhhhHHHHHhhcCccccc------cccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCCc
Q 009898 3 SYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 76 (523)
Q Consensus 3 ~Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~~------~~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp~ 76 (523)
+|+.+||+|+|||||.+|++|++++.+|+++|.+++. +.|+.+++.++.++...+++.|++.++++|++|||||
T Consensus 81 ~ll~~~i~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~ 160 (363)
T 3ory_A 81 NIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPW 160 (363)
T ss_dssp HHHHTTCEEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHcCCCcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCE
Confidence 4678999999999999999999999999999987643 2466677888888888899999999999999999999
Q ss_pred ccCcchHHHHHHHHHHcCCeeEEecCCCceEeecccEEEEEccCCCC-------c----eEEEEeHHHHHHHhCCChhHH
Q 009898 77 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER-------G----YVVCYEMDDIERKLGFGRNSL 145 (523)
Q Consensus 77 i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~~~Vir~~~~~~~-------~----~v~~y~~~~i~~~lgl~r~ql 145 (523)
++||||||||||+|++.|++++|+|+|+|+|+||+++|+++++..+. . .+++|+.+.+.+++|++++||
T Consensus 161 i~apgEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~ 240 (363)
T 3ory_A 161 VQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENL 240 (363)
T ss_dssp EECSSCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHH
T ss_pred EEeCccHHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHH
Confidence 99999999999999999999999999999999999999998765321 1 136899999999999999999
Q ss_pred HHHHHHhCCCCCC-CCCCCcHHHHHHHHHHhCCH-HHHHHHHhcCchHHHHhhhhcccCcccccCCccccccccccccCC
Q 009898 146 ITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDN-VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 223 (523)
Q Consensus 146 idlaiL~G~DY~p-GVpGIG~ktA~kLl~~~g~~-~iL~~~~~~~~~~~~k~~~~~k~~~~~~c~~~~~~~~~e~~~~~~ 223 (523)
+|+|+|+||||+| ||||||+|||++||++||+. +++++++.
T Consensus 241 id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~------------------------------------- 283 (363)
T 3ory_A 241 IDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK------------------------------------- 283 (363)
T ss_dssp HHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC-------------------------------------
T ss_pred HHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc-------------------------------------
Confidence 9999999999999 99999999999999999994 45554321
Q ss_pred cCcCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccCHHHHHHHHHHhcCCCcccccchhhhhhhHHHH
Q 009898 224 DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL 295 (523)
Q Consensus 224 ~~~ip~~FP~~~Vi~~Yl~P~vs~~~~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~e~~l 295 (523)
..+ +||..+|.++|++|.|..+ .++.| . ..|.++|++|+.+.++|+.+++++.+.|+.+.+.-
T Consensus 284 -~~~--~~~~~~~~~~f~~p~v~~~-~~~~w----~-~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~ 346 (363)
T 3ory_A 284 -SPI--EVDVIAIKKYFLQPQVTDN-YRIEW----H-TPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKE 346 (363)
T ss_dssp -CSS--CCCHHHHHHHHHSCCCCSC-CCCCC----C-CCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -ccC--CCCHHHHHHHhcCCCCCCC-CCCCC----C-CCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcc
Confidence 012 4788999999999999853 22222 1 22788999999999999999999999999876654
No 2
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=6.6e-46 Score=384.11 Aligned_cols=249 Identities=18% Similarity=0.301 Sum_probs=214.3
Q ss_pred hhhhcCcEEEEEEcCCCCchhhhHHHHHhhcCcccc------ccccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCCc
Q 009898 3 SYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 76 (523)
Q Consensus 3 ~Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~------~~~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp~ 76 (523)
+|+++||+|+|||||.+|++|++++.+|+++|.++. ...+.++++.++.++...++..|++.++++|++|||||
T Consensus 72 ~ll~~~i~P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~ 151 (341)
T 3q8k_A 72 RMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPY 151 (341)
T ss_dssp HHHTTTCEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHCCCCceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCE
Confidence 477889999999999999999999999999987642 23456778888888888899999999999999999999
Q ss_pred ccCcchHHHHHHHHHHcCCeeEEecCCCceEeecccEEEEEccCC--CCceEEEEeHHHHHHHhCCChhHHHHHHHHhCC
Q 009898 77 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG--ERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154 (523)
Q Consensus 77 i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~~~Vir~~~~~--~~~~v~~y~~~~i~~~lgl~r~qlidlaiL~G~ 154 (523)
++||||||||||+|++.|.+++|+|+|+|+|+||+++|++++... .+..+.+|+.+.+.+++|++++||+|+|+|+||
T Consensus 152 i~ap~EADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~ 231 (341)
T 3q8k_A 152 LDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGS 231 (341)
T ss_dssp EECSSCHHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCC
T ss_pred EECCccHHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999987543 224578999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCC-HHHHHHHHhcCchHHHHhhhhcccCcccccCCccccccccccccCCcCcCCCCCCc
Q 009898 155 DYSQGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPF 233 (523)
Q Consensus 155 DY~pGVpGIG~ktA~kLl~~~g~-~~iL~~~~~~~~~~~~k~~~~~k~~~~~~c~~~~~~~~~e~~~~~~~~~ip~~FP~ 233 (523)
||+|||||||+|||++||++||+ ++++++++. .+..+|++||+
T Consensus 232 D~~~gipGiG~KtA~kll~~~gsle~i~~~~~~------------------------------------~k~~~~~~~~~ 275 (341)
T 3q8k_A 232 DYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDP------------------------------------NKYPVPENWLH 275 (341)
T ss_dssp SSSCCCTTCCHHHHHHHHHHHCSHHHHHHHSCT------------------------------------TTSCCCTTCCH
T ss_pred CCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHh------------------------------------cCCCCCcccch
Confidence 99999999999999999999999 457776542 01256778999
Q ss_pred HHHHHHhcCCccCCCCh-HHHHHHhhhcccCHHHHHHHHHHhcCCCcccccchhhhhhhH
Q 009898 234 SQVIDAYSNPKCYSADS-EAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292 (523)
Q Consensus 234 ~~Vi~~Yl~P~vs~~~~-e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~e 292 (523)
.++.+.|++|.|..+.. ++.| .+++.++|++|+.+.++|+.+++++.+-++.+.
T Consensus 276 ~~~r~l~l~~~V~~~~~~~l~~-----~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~ 330 (341)
T 3q8k_A 276 KEAHQLFLEPEVLDPESVELKW-----SEPNEEELIKFMCGEKQFSEERIRSGVKRLSKS 330 (341)
T ss_dssp HHHHHHHHSCCCCCTTTSCCCC-----CCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCcccccCC-----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999975432 2221 245889999999999999998888777666543
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=1e-45 Score=381.92 Aligned_cols=242 Identities=19% Similarity=0.300 Sum_probs=205.4
Q ss_pred hhhhhcCcEEEEEEcCCCCchhhhHHHHHhhcCcccc------ccccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCC
Q 009898 2 KSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVP 75 (523)
Q Consensus 2 k~Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~------~~~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp 75 (523)
.+|+++||+|||||||..|++|++++.+|+.+|.++. .+.++.+.+.++.++...+++.|++.++++|++||||
T Consensus 66 ~~ll~~~i~pv~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip 145 (340)
T 1b43_A 66 INLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIP 145 (340)
T ss_dssp HHHHHTTCEEEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCEEEEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Confidence 4578899999999999999999999999999987753 3455666677787777778899999999999999999
Q ss_pred cccCcchHHHHHHHHHHcCCeeEEecCCCceEeecccEEEEEccCCCCc-----------eEEEEeHHHHHHHhCCChhH
Q 009898 76 CLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----------YVVCYEMDDIERKLGFGRNS 144 (523)
Q Consensus 76 ~i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~~~Vir~~~~~~~~-----------~v~~y~~~~i~~~lgl~r~q 144 (523)
|++||||||||||+|++.|++++|+|+|+|+|+||+++|+++++..+.+ .+++|+.+.+.+++|++++|
T Consensus 146 ~i~ap~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q 225 (340)
T 1b43_A 146 IVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREK 225 (340)
T ss_dssp EEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHH
T ss_pred EEEcChhHHHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999999999988654211 34579999999999999999
Q ss_pred HHHHHHHhCCCCCC-CCCCCcHHHHHHHHHHhCCH-HHHHHHHhcCchHHHHhhhhcccCcccccCCccccccccccccC
Q 009898 145 LITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDN-VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 222 (523)
Q Consensus 145 lidlaiL~G~DY~p-GVpGIG~ktA~kLl~~~g~~-~iL~~~~~~~~~~~~k~~~~~k~~~~~~c~~~~~~~~~e~~~~~ 222 (523)
|+|+|+|+||||+| ||||||+|||++||++||+. +++++
T Consensus 226 ~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~--------------------------------------- 266 (340)
T 1b43_A 226 LIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQK--------------------------------------- 266 (340)
T ss_dssp HHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGG---------------------------------------
T ss_pred HHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHHHHcC---------------------------------------
Confidence 99999999999999 99999999999999999983 23222
Q ss_pred CcCcCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccCHHHHHHHHHHhcCCCcccccchhhhhhhHH
Q 009898 223 TDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAER 293 (523)
Q Consensus 223 ~~~~ip~~FP~~~Vi~~Yl~P~vs~~~~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~e~ 293 (523)
+++||+..+.++|++|.|... .+.. + .+++.++|++|+.+.++|+.+++++.+.|+.+.+
T Consensus 267 -----~~~~~~~~~~~~~~~~~v~d~-~~~~----~-~~pd~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~ 326 (340)
T 1b43_A 267 -----QSDVDLYAIKEFFLNPPVTDN-YNLV----W-RDPDEEGILKFLCDEHDFSEERVKNGLERLKKAI 326 (340)
T ss_dssp -----GCSSCHHHHHHHHHSCCCCCC-CCCC----C-CCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHH
T ss_pred -----CCCccHHHHHHHHhCCCCCCc-ccCC----C-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Confidence 235667789999999988752 1111 1 2447899999999999999999999988876554
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-45 Score=379.06 Aligned_cols=249 Identities=21% Similarity=0.329 Sum_probs=170.0
Q ss_pred hhhhcCcEEEEEEcCCCCchhhhHHHHHhhcCccccc------cccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCCc
Q 009898 3 SYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 76 (523)
Q Consensus 3 ~Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~~------~~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp~ 76 (523)
+|+++||+|||||||..|++|++++.+|+++|.+++. +.|+.+++.++.++...+++.|++.++++|++|||||
T Consensus 64 ~ll~~~i~Pv~vFDG~~~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~ 143 (346)
T 2izo_A 64 NILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPI 143 (346)
T ss_dssp HHHHHTEEEEEEECC----------------------------------------------CHHHHHHHHHHHHHHTCCE
T ss_pred HHHHCCCcEEEEECCCCcchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCE
Confidence 5788999999999999999999999999999987643 3456667777777777888999999999999999999
Q ss_pred ccCcchHHHHHHHHHHcCCeeEEecCCCceEeecccEEEEEccCCCCc-----------eEEEEeHHHHHHHhCCChhHH
Q 009898 77 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----------YVVCYEMDDIERKLGFGRNSL 145 (523)
Q Consensus 77 i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~~~Vir~~~~~~~~-----------~v~~y~~~~i~~~lgl~r~ql 145 (523)
++||||||||||+|++.|++++|+|+|+|+|+||+++|++++...+.+ .+++|+.+.+.+++|++++||
T Consensus 144 i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~ 223 (346)
T 2izo_A 144 VQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQL 223 (346)
T ss_dssp EECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHH
T ss_pred EEcCCcHHHHHHHHHhCCCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHH
Confidence 999999999999999999999999999999999999999987543211 356899999999999999999
Q ss_pred HHHHHHhCCCCCC-CCCCCcHHHHHHHHHHhCC-HHHHHHHHhcCchHHHHhhhhcccCcccccCCccccccccccccCC
Q 009898 146 ITLALLLGSDYSQ-GVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 223 (523)
Q Consensus 146 idlaiL~G~DY~p-GVpGIG~ktA~kLl~~~g~-~~iL~~~~~~~~~~~~k~~~~~k~~~~~~c~~~~~~~~~e~~~~~~ 223 (523)
+|+|+|+||||+| ||||||+|||++||++||+ ++|+++++..
T Consensus 224 id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~~------------------------------------ 267 (346)
T 2izo_A 224 IDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEIS------------------------------------ 267 (346)
T ss_dssp HHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC----------------------------------------------
T ss_pred HHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhc------------------------------------
Confidence 9999999999999 9999999999999999999 5688877631
Q ss_pred cCcCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccCHHHHHHHHHHhcCCCcccccchhhhhhhHHH
Q 009898 224 DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERD 294 (523)
Q Consensus 224 ~~~ip~~FP~~~Vi~~Yl~P~vs~~~~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~e~~ 294 (523)
+++.+|++.++...|++|.|..+..+.. + .+++.++|++|+.+.++|+..++...+-|+.+.+.
T Consensus 268 --k~~~~~~~~~l~~i~~~~~v~~~~~~l~----~-~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~ 331 (346)
T 2izo_A 268 --KKDINFNIDEIRGLFLNPQVVKPEEALD----L-NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIK 331 (346)
T ss_dssp ---------CTTHHHHHHSCCCCCCC-CCC----C-CCCCHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred --cCCCCccHHHHHHHhhCCCCCCccccCc----c-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 0223455689999999999875432221 1 24478899999999999999999999988886654
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=9.3e-44 Score=365.36 Aligned_cols=238 Identities=19% Similarity=0.307 Sum_probs=203.7
Q ss_pred hhhhcCcEEEEEEcCCCCchhhhHHHHHhhcCccccc------cccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCCc
Q 009898 3 SYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 76 (523)
Q Consensus 3 ~Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~~------~~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp~ 76 (523)
+|+.+||+|||||||..|++|++++.+|+++|.+++. +.|+.+++.++.++...+++.|++.++++|++|||||
T Consensus 67 ~ll~~~i~Pv~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~ 146 (326)
T 1a76_A 67 HLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPY 146 (326)
T ss_dssp HHHHTTCEEEEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHCCCeEEEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCe
Confidence 4568999999999999999999999999999987543 2455666777777777889999999999999999999
Q ss_pred ccCcchHHHHHHHHHHcCCeeEEecCCCceEeecccEEEEEccCCCCceEEEEeHHHHHHHhCCChhHHHHHHHHhCCCC
Q 009898 77 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 156 (523)
Q Consensus 77 i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~~~Vir~~~~~~~~~v~~y~~~~i~~~lgl~r~qlidlaiL~G~DY 156 (523)
++||||||||||+|++.|++++|+|+|+|+++||+++|++++... +..+++|+.+.+.+++|++++||+|+|+|+||||
T Consensus 147 i~apgEAD~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~-~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ 225 (326)
T 1a76_A 147 VEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTT-KEMPELIELNEVLEDLRISLDDLIDIAIFMGTDY 225 (326)
T ss_dssp EECSSCHHHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSC-SSCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTT
T ss_pred EECCccHHHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCC-CCceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999988754 3578899999999999999999999999999999
Q ss_pred CC-CCCCCcHHHHHHHHHHhCC-HHHH-HHHHhcCchHHHHhhhhcccCcccccCCccccccccccccCCcCcCCCCCCc
Q 009898 157 SQ-GVRGLGPESACQIVKSVGD-NVVL-QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPF 233 (523)
Q Consensus 157 ~p-GVpGIG~ktA~kLl~~~g~-~~iL-~~~~~~~~~~~~k~~~~~k~~~~~~c~~~~~~~~~e~~~~~~~~~ip~~FP~ 233 (523)
+| ||||||+|||++||++ |+ ++++ ++++. .
T Consensus 226 ~p~GvpGiG~ktA~kli~~-gsle~i~~~~~~~----------------------------------------------~ 258 (326)
T 1a76_A 226 NPGGVKGIGFKRAYELVRS-GVAKDVLKKEVEY----------------------------------------------Y 258 (326)
T ss_dssp STTTTTTCCHHHHHHHHHH-TCHHHHHHHHSTT----------------------------------------------H
T ss_pred CCCCCCCcCHHHHHHHHHc-CCHHHHHHHHHhH----------------------------------------------H
Confidence 99 9999999999999999 99 4576 66431 1
Q ss_pred HHHHHHhcCCccCCCChHHHHHHhhhcccCHHHHHHHHHHhcCCCcccccchhhhhhhHHH
Q 009898 234 SQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERD 294 (523)
Q Consensus 234 ~~Vi~~Yl~P~vs~~~~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~e~~ 294 (523)
..+.++|++|.+.. +.+.. ..+++.++|++|+.+.++|+.+++++.+.|+...+.
T Consensus 259 ~~~~~~~l~~~l~~-~~~~~-----~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~ 313 (326)
T 1a76_A 259 DEIKRIFKEPKVTD-NYSLS-----LKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIA 313 (326)
T ss_dssp HHHHHHHHSCCCCC-CCCCC-----CCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCC-CccCC-----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 34457888888765 32211 123478899999999999999999999998876544
No 6
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.2e-43 Score=371.89 Aligned_cols=249 Identities=18% Similarity=0.303 Sum_probs=194.0
Q ss_pred hhhhcCcEEEEEEcCCCCchhhhHHHHHhhcCccccc------cccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCCc
Q 009898 3 SYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 76 (523)
Q Consensus 3 ~Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~~------~~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp~ 76 (523)
+|+++||+|+|||||..|++|++++.+|+++|.++.. +.++++++.++.++...++..|+..++++|++|||||
T Consensus 72 ~ll~~~i~P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~ 151 (379)
T 1ul1_X 72 RMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPY 151 (379)
T ss_dssp HHHHTTCCEEEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCE
T ss_pred HHHHCCCCeEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCe
Confidence 5778999999999999999999999999999977532 2455667777877777888899999999999999999
Q ss_pred ccCcchHHHHHHHHHHcCCeeEEecCCCceEeecccEEEEEccCCC--CceEEEEeHHHHHHHhCCChhHHHHHHHHhCC
Q 009898 77 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGS 154 (523)
Q Consensus 77 i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~~~Vir~~~~~~--~~~v~~y~~~~i~~~lgl~r~qlidlaiL~G~ 154 (523)
++||||||||||+|++.|.+++|+|+|+|+|+||+++|++++...+ ...+.+|+.+.+.+.+|++++||+|+|+|+||
T Consensus 152 i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~ 231 (379)
T 1ul1_X 152 LDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGS 231 (379)
T ss_dssp EECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred ecCCCcHHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999875422 13588999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCC-HHHHHHHHhcCchHHHHhhhhcccCcccccCCccccccccccccCCcCcCCCCCCc
Q 009898 155 DYSQGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPF 233 (523)
Q Consensus 155 DY~pGVpGIG~ktA~kLl~~~g~-~~iL~~~~~~~~~~~~k~~~~~k~~~~~~c~~~~~~~~~e~~~~~~~~~ip~~FP~ 233 (523)
||++||||||+|||++||++||+ ++|+++++.. +..+|++|++
T Consensus 232 D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~~------------------------------------k~~~~~~~~~ 275 (379)
T 1ul1_X 232 DYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPN------------------------------------KYPVPENWLH 275 (379)
T ss_dssp SSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCT------------------------------------TSCCCSSCCH
T ss_pred CcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhh------------------------------------cccCCCcCCH
Confidence 99999999999999999999999 4566665420 1235678888
Q ss_pred HHHHHHhcCCccCCCChHHHHHHhhhcccCHHHHHHHHHHhcCCCcccccchhhhhhh
Q 009898 234 SQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIA 291 (523)
Q Consensus 234 ~~Vi~~Yl~P~vs~~~~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~ 291 (523)
..+.+.|++|.|..+.. + .+.+ .+++.++|++|+.+.++|+..+++..+-++.+
T Consensus 276 ~~ar~l~l~~~v~~~~~--~-~l~~-~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~ 329 (379)
T 1ul1_X 276 KEAHQLFLEPEVLDPES--V-ELKW-SEPNEEELIKFMCGEKQFSEERIRSGVKRLSK 329 (379)
T ss_dssp HHHHHHHHSCCCCCGGG--C-CCCC-CCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeeCCCCC--c-cCCC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 89999999999975321 1 1111 23478899999999999999888777666553
No 7
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=8.1e-43 Score=359.73 Aligned_cols=241 Identities=20% Similarity=0.304 Sum_probs=199.9
Q ss_pred hhhhcCcEEEEEEcCCCCchhhhHHHHHhhcCcccccc------ccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCCc
Q 009898 3 SYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 76 (523)
Q Consensus 3 ~Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~~~------~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp~ 76 (523)
+|++++|+|||||||..|++|++++.+|+++|.+++.. .|+ +++..+.+....+++.|++.++++|++|||||
T Consensus 67 ~ll~~~i~Pv~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~ 145 (336)
T 1rxw_A 67 NMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPF 145 (336)
T ss_dssp HHHHHTCEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHCCCEEEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhccCCHHHHHHHHHHHHhCCCCE
Confidence 57889999999999999999999999999999876522 222 45666666667889999999999999999999
Q ss_pred ccCcchHHHHHHHHHHcCCeeEEecCCCceEeecccEEEEEccCCCCc-----------eEEEEeHHHHHHHhCCChhHH
Q 009898 77 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----------YVVCYEMDDIERKLGFGRNSL 145 (523)
Q Consensus 77 i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~~~Vir~~~~~~~~-----------~v~~y~~~~i~~~lgl~r~ql 145 (523)
++||||||||||+|++.|++++|+|+|+|+++||+++|++++...+.. .+++|+.+.+.+++|++++||
T Consensus 146 i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~ 225 (336)
T 1rxw_A 146 VDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQL 225 (336)
T ss_dssp EECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHH
T ss_pred EEcCchHHHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHH
Confidence 999999999999999999999999999999999999999987643211 456899999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCC-HHHHHHHHhcCchHHHHhhhhcccCcccccCCccccccccccccCCc
Q 009898 146 ITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 224 (523)
Q Consensus 146 idlaiL~G~DY~pGVpGIG~ktA~kLl~~~g~-~~iL~~~~~~~~~~~~k~~~~~k~~~~~~c~~~~~~~~~e~~~~~~~ 224 (523)
+|+|+|+||||+|||||||+|||++||++||+ ++|+++++. ++
T Consensus 226 id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~~---~l--------------------------------- 269 (336)
T 1rxw_A 226 IDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKV---NI--------------------------------- 269 (336)
T ss_dssp HHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHTC--------------------------------------
T ss_pred HHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCCC---CC---------------------------------
Confidence 99999999999999999999999999999999 468887652 00
Q ss_pred CcCCCCCCcHHHHHHhcCCccCCCChHHHHHHhhhcccCHHHHHHHHHHhcCCCcccccchhhhhhhH
Q 009898 225 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 292 (523)
Q Consensus 225 ~~ip~~FP~~~Vi~~Yl~P~vs~~~~e~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llPll~e 292 (523)
+ + ..++...|++|.++. ..+..| .+++.++|++|+.+.++|+..++...|-++.+.
T Consensus 270 ---~-~--~~~l~~i~~~~~v~~-~~~~~~-----~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~ 325 (336)
T 1rxw_A 270 ---D-H--VEEIRNFFLNPPVTD-DYRIEF-----REPDFEKAIEFLCEEHDFSRERVEKALEKLKAL 325 (336)
T ss_dssp --------CHHHHHHHHSCCCCC-CCCCCC-----CCCCHHHHHHHHTTTTCCCHHHHHHHHGGGCC-
T ss_pred ---c-c--HHHHHHHHhCCCCCC-cccccC-----CCCCHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Confidence 0 0 127888899988873 222111 245788999999999999998888877777654
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=3.9e-40 Score=342.28 Aligned_cols=183 Identities=21% Similarity=0.286 Sum_probs=158.3
Q ss_pred hhhhhcCcEEEEEEcCCCCchhhhHHHHHhhcCcccc------ccccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCC
Q 009898 2 KSYLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVP 75 (523)
Q Consensus 2 k~Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~------~~~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp 75 (523)
+.|+++||+|||||||.+|+.|..+..+|+.+|.++. .+.++.+++.++.++..++++.|++.++++|++||||
T Consensus 64 ~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp 143 (352)
T 3qe9_Y 64 NMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVD 143 (352)
T ss_dssp HHHHHTTCEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHcCCEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999988888876532 2355556777777777788999999999999999999
Q ss_pred cccCcchHHHHHHHHHHcCCeeEEecCCCceEeecccEEEEEccCCCCceEEEEeHHHH--HHHhC--CChhHHHHHHHH
Q 009898 76 CLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDI--ERKLG--FGRNSLITLALL 151 (523)
Q Consensus 76 ~i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~~~Vir~~~~~~~~~v~~y~~~~i--~~~lg--l~r~qlidlaiL 151 (523)
|++||||||||||+|++.|++|+|+|+|+|+|+||+++|++++...+ .. ..|+.+.+ .+++| ++++||+|+|+|
T Consensus 144 ~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~~~g~~l~~~q~id~~~L 221 (352)
T 3qe9_Y 144 CLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFG-NG-LEIDQARLGMCRQLGDVFTEEKFRYMCIL 221 (352)
T ss_dssp EEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTS-EE-EEEEGGGGTTCCTTCSSCCHHHHHHHHHH
T ss_pred EEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCC-Cc-EEEeHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998776432 33 34777665 57888 999999999999
Q ss_pred hCCCCCCCCCCCcHHHHHHHHHHh--CC-HHHHHHHHh
Q 009898 152 LGSDYSQGVRGLGPESACQIVKSV--GD-NVVLQRIAS 186 (523)
Q Consensus 152 ~G~DY~pGVpGIG~ktA~kLl~~~--g~-~~iL~~~~~ 186 (523)
+||||+|||||||+|||++||++| |+ +++|+++++
T Consensus 222 ~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~ 259 (352)
T 3qe9_Y 222 SGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGH 259 (352)
T ss_dssp HCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHH
T ss_pred cCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 999999999999999999999999 56 467887764
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.96 E-value=1.6e-30 Score=263.55 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=142.3
Q ss_pred EEEEEEcCCCCchhhhHHHHHhhcCccccccccchHHHHHHHhhcccccHHH-HHHHHHHHHH--hCCCcccCcc-hHHH
Q 009898 10 ALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM-IKEAKALGLS--LGVPCLEGVE-EAEA 85 (523)
Q Consensus 10 ~PVFVFDG~~P~~K~~t~~kRk~~R~~~~~~~~~~e~a~~~~R~~~~~~~~~-i~~ik~lL~~--~GIp~i~AP~-EAEA 85 (523)
++++||||.+|.+|++.+..|+++|.+++.+... . ...+..+ ++.++++|++ ||||++.+|+ ||||
T Consensus 61 ~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~~---~-------~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADD 130 (290)
T 1exn_A 61 TTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTE---E-------EKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADD 130 (290)
T ss_dssp EEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCH---H-------HHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHH
T ss_pred eEEEEEcCCCchhhhhCcHHHHcCCCCCCccccc---c-------chhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHH
Confidence 5699999999999999999999999775522110 0 0123445 8899999999 9999999997 9999
Q ss_pred HHHHHHHc----CCeeEEecCCCceEeecccEE-EEEccCCCCceEEEEeHHHHHHHhCCCh-hHHHHHHHHhC--CCCC
Q 009898 86 QCALLNLE----SLCDGCFSSDSDIFLFGARTV-YRDIWLGERGYVVCYEMDDIERKLGFGR-NSLITLALLLG--SDYS 157 (523)
Q Consensus 86 qcA~L~~~----G~vdaViS~DsD~llfG~~~V-ir~~~~~~~~~v~~y~~~~i~~~lgl~r-~qlidlaiL~G--~DY~ 157 (523)
+||+|++. |....|+|.|+|+++|+++.| +++.. .++.|+.+.+.+++|++| +||+|+++|+| |||+
T Consensus 131 viatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v~~~~-----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDni 205 (290)
T 1exn_A 131 MAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFT-----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNI 205 (290)
T ss_dssp HHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEEEETT-----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTB
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEEEECC-----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCC
Confidence 99999875 777789999999999999866 44422 346899999999999999 99999999999 9999
Q ss_pred CCCCCCcHHHHHHHHHHhCC-HHHHHHHHhc-CchHHHHh
Q 009898 158 QGVRGLGPESACQIVKSVGD-NVVLQRIASE-GLSFVKRA 195 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~g~-~~iL~~~~~~-~~~~~~k~ 195 (523)
|||||||+|||++||++||+ ++|+++++.. ..++.+++
T Consensus 206 PGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~~~~~~L 245 (290)
T 1exn_A 206 RGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNL 245 (290)
T ss_dssp CCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCCHHHHHH
T ss_pred CCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999 5699998865 33444444
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.95 E-value=7.9e-31 Score=298.11 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=143.8
Q ss_pred hhhcCcEEEEEEcCCCCchhhhHHHHHhhcCccccccccchHHHHHHHhhcccccHHHHHHHHHHHHHhCCCcccCcc-h
Q 009898 4 YLHYSSALLRSLNGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVE-E 82 (523)
Q Consensus 4 Ll~~gI~PVFVFDG~~P~~K~~t~~kRk~~R~~~~~~~~~~e~a~~~~R~~~~~~~~~i~~ik~lL~~~GIp~i~AP~-E 82 (523)
+..++++|+|||||..|.+|++++..|+++|.+++. .+..+++.++++|++||||++.+|+ |
T Consensus 55 l~~~~~~~v~vFDg~~~tfR~~~~~~YKa~R~~~pe-----------------~l~~q~~~i~~~l~~~gi~~i~~pg~E 117 (832)
T 1bgx_T 55 LKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPE-----------------DFPRQLALIKELVDLLGLARLEVPGYE 117 (832)
T ss_dssp GGTCCSCCCCCCCCSSSCSSSGGGGTTTSCCCCCCT-----------------TSTTGGGTHHHHHHHTTCCCCCCSSSC
T ss_pred HHHcCCeEEEEEcCCCccccccchHHHHhccccChH-----------------HHHHHHHHHHHHHHHCCCCEEEeCCcc
Confidence 345579999999999999999999999999987653 2335678899999999999999996 9
Q ss_pred HHHHHHHHHH----cCCeeEEecCCCceEeecccEEEEEccCCCCceEEEEeHHHHHHHhCCChhHHHHHHHHhC--CCC
Q 009898 83 AEAQCALLNL----ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG--SDY 156 (523)
Q Consensus 83 AEAqcA~L~~----~G~vdaViS~DsD~llfG~~~Vir~~~~~~~~~v~~y~~~~i~~~lgl~r~qlidlaiL~G--~DY 156 (523)
|||+||+|++ .|..++|+|+|+|+++|++++|++... .+ ++|+.+.+.+++|++|+||+|+|+|+| |||
T Consensus 118 ADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~~--~g---~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDn 192 (832)
T 1bgx_T 118 ADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHP--EG---YLITPAWLWEKYGLRPDQWADYRALTGDESDN 192 (832)
T ss_dssp HHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCCS--SS---CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEeC--CC---cEEcHHHHHHHHCcCHHHHHHHHHhcCCcccc
Confidence 9999999987 688999999999999999998877654 22 578999999999999999999999999 999
Q ss_pred CCCCCCCcHHHHHHHHHHhCC-HHHHHHHHhc
Q 009898 157 SQGVRGLGPESACQIVKSVGD-NVVLQRIASE 187 (523)
Q Consensus 157 ~pGVpGIG~ktA~kLl~~~g~-~~iL~~~~~~ 187 (523)
+|||||||+|||++||++||+ ++|++++++.
T Consensus 193 ipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~ 224 (832)
T 1bgx_T 193 LPGVKGIGEKTARKLLEEWGSLEALLKNLDRL 224 (832)
T ss_dssp CCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCC
T ss_pred CCCCCCcCchHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999999999999999999 5688887754
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.68 E-value=1.2e-17 Score=169.36 Aligned_cols=139 Identities=13% Similarity=-0.027 Sum_probs=108.2
Q ss_pred cCcEEEEEEcCC-CCchhhhHHHHHhhcCccccccccchHHHHHHHhhcccccHHHH-HHHHHHHHHhCCCcccCcc-hH
Q 009898 7 YSSALLRSLNGS-IPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMI-KEAKALGLSLGVPCLEGVE-EA 83 (523)
Q Consensus 7 ~gI~PVFVFDG~-~P~~K~~t~~kRk~~R~~~~~~~~~~e~a~~~~R~~~~~~~~~i-~~ik~lL~~~GIp~i~AP~-EA 83 (523)
..-+.+++||+. .+.+|++.+..||++|.+.+.+.... . ..+..++ ..++++|++||||++..|| ||
T Consensus 62 ~P~~iavaFD~~~~~tfR~elyp~YKanR~~~PeeL~~Q--~--------~~l~~Qi~p~ike~l~a~gi~~l~~~G~EA 131 (305)
T 3h7i_A 62 GYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTWD--W--------EGYFESSHKVIDELKAYMPYIVMDIDKYEA 131 (305)
T ss_dssp TCCEEEEECCCCTTCCHHHHHSTTTTHHHHHHHHHCSSC--H--------HHHHHHHHHHHHHHHHHSSSEEECCTTCCH
T ss_pred CCCEEEEEecCCCCcchHhhhCHHhccCCCCCCHHHHHH--H--------HHhhhhhHHHHHHHHHHCCCCEEccCCccH
Confidence 456789999987 69999999999999998765321100 0 0012344 6799999999999999997 99
Q ss_pred HHHHHHHHH----cCCeeEEecCCCceEeecc-cEE-EEEccCCCCceEEEEeHHHHHHHhCCChhHHHHHHHHhC--CC
Q 009898 84 EAQCALLNL----ESLCDGCFSSDSDIFLFGA-RTV-YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG--SD 155 (523)
Q Consensus 84 EAqcA~L~~----~G~vdaViS~DsD~llfG~-~~V-ir~~~~~~~~~v~~y~~~~i~~~lgl~r~qlidlaiL~G--~D 155 (523)
|+.||.|++ .|.-..|+|.|+|++++.. +.| +++... .+.|.+++|+ |+|++|+++|+| +|
T Consensus 132 DDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~~~~~~~----------~~~V~ek~Gv-P~q~iD~~aL~GDsSD 200 (305)
T 3h7i_A 132 NDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNVKQWSPMH----------KKWVKIKSGS-AEIDCMTKILKGDKKD 200 (305)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEEEEETTT----------TEEECSSCSC-HHHHHHHHHHHCBGGG
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCeEEEecCC----------HHHHHHHhCC-HHHHhhHHheeCcccc
Confidence 999999875 5666789999999999986 333 333221 1235668998 999999999999 89
Q ss_pred CCCCCCCCcHH
Q 009898 156 YSQGVRGLGPE 166 (523)
Q Consensus 156 Y~pGVpGIG~k 166 (523)
++|||||||+.
T Consensus 201 NIPGVpGIG~~ 211 (305)
T 3h7i_A 201 NVASVKVRSDF 211 (305)
T ss_dssp TBCCTTSCTTH
T ss_pred CCCCCCcCCcc
Confidence 99999999986
No 12
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=97.34 E-value=0.00013 Score=57.30 Aligned_cols=56 Identities=21% Similarity=0.400 Sum_probs=50.1
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHhccCC
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQP 378 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~~~ 378 (523)
.|.+|+..|..+|..-|-|.|.|.+.-.-||+|++-+. .||++|.+|+++.++.++
T Consensus 6 ~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~~~~k~ 61 (62)
T 3lwe_A 6 EVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLE-DCKEVLLEFRKKIAENKA 61 (62)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHT-TCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhh-ccHHHHHHHHHhhHhhcC
Confidence 45689999999999999999999998888999999984 799999999999988654
No 13
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=97.13 E-value=0.00021 Score=58.01 Aligned_cols=54 Identities=19% Similarity=0.437 Sum_probs=48.1
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHhccC
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQ 377 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~~ 377 (523)
.|.+|+..|..+|..-|-|.|.|.+.-.-+|+|++-+ .||++|.+|+++....+
T Consensus 15 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL--~~~~li~~f~~~~~~~~ 68 (73)
T 1ap0_A 15 VVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQKTAH 68 (73)
T ss_dssp EEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC--CCHHHHHHHTTTTTSST
T ss_pred EEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC--CCHHHHHHHHHHhhccc
Confidence 4679999999999999999999999888999999998 49999999998766644
No 14
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=97.11 E-value=9.2e-05 Score=58.73 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=46.9
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHhcc
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 376 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~ 376 (523)
|.+|+..|..+|..-|-|.|.|.+.-.-+|+|++-+. ||++|.+|+++...+
T Consensus 3 VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~--c~~li~~f~~~~~~~ 54 (64)
T 3mts_A 3 VEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK--CVRILKQFHKDLERE 54 (64)
T ss_dssp EEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC--CHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC--CHHHHHHHHHHHHHH
Confidence 4589999999999999999999998888999999994 999999999887765
No 15
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=97.03 E-value=0.00072 Score=79.38 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=62.3
Q ss_pred CCCccc----CcchHHHHHHHHHH---------cCCeeEEecCCCceEeecc----c--EEEEEcc-CCC--------Cc
Q 009898 73 GVPCLE----GVEEAEAQCALLNL---------ESLCDGCFSSDSDIFLFGA----R--TVYRDIW-LGE--------RG 124 (523)
Q Consensus 73 GIp~i~----AP~EAEAqcA~L~~---------~G~vdaViS~DsD~llfG~----~--~Vir~~~-~~~--------~~ 124 (523)
++.++. .|||+|.-+-...+ -+....|++.|+|++++|- + .++|.-. ++. ..
T Consensus 162 ~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~~ 241 (1140)
T 2y35_A 162 RCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEET 241 (1140)
T ss_dssp SSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGGC
T ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeeccccccccccccccccc
Confidence 566665 47999986554332 1457799999999999873 1 4666421 111 13
Q ss_pred eEEEEeHHHHHHH----h--------CCC----hhHHHHHHHHhCCCCCCCCCCCcHH
Q 009898 125 YVVCYEMDDIERK----L--------GFG----RNSLITLALLLGSDYSQGVRGLGPE 166 (523)
Q Consensus 125 ~v~~y~~~~i~~~----l--------gl~----r~qlidlaiL~G~DY~pGVpGIG~k 166 (523)
.+..++...+.+. + .++ .+.||.+|.|+|+||+|++|++.+.
T Consensus 242 ~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~ 299 (1140)
T 2y35_A 242 RFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHIS 299 (1140)
T ss_dssp EEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTT
T ss_pred ceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCccccC
Confidence 4566776554432 2 123 3678889999999999999998744
No 16
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=96.92 E-value=0.00043 Score=53.00 Aligned_cols=50 Identities=20% Similarity=0.479 Sum_probs=43.9
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHH
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 373 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 373 (523)
.|.+|+..|..+|..-|-|.|.|.+.-.-+|+|++-+ .||++|.+|+++.
T Consensus 4 ~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~q 53 (55)
T 3f2u_A 4 VVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQ 53 (55)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CCHHHHHHHHC--
T ss_pred EEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC--CCHHHHHHHHHHc
Confidence 3568999999999999999999999888899999999 5999999998764
No 17
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=96.84 E-value=0.00068 Score=55.03 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=48.1
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHhccC
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQ 377 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~~ 377 (523)
.|-+|+..|..+|..-|.|.|.+.+.-.-+|+|++-+. +|++|.+|+++.+.+.
T Consensus 15 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~--~~~li~~f~~~~~~~~ 68 (74)
T 2kvm_A 15 AVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL--DPRLVMAYEEKEERDR 68 (74)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCS--CHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCC--CHHHHHHHHHHhhhhh
Confidence 46799999999999999999999988888999999876 6899999999887753
No 18
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=96.84 E-value=0.00052 Score=53.36 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=43.5
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHhc
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRAL 375 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~ 375 (523)
|.+|+..|..+|..-|-|.|.|.+.-..+|+|++-+ .||++|.+|+++..+
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~~k~ 56 (59)
T 3fdt_A 6 VEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL--DCPELISEFMKKYKK 56 (59)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHC----
T ss_pred EEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC--CCHHHHHHHHHhhhh
Confidence 468999999999999999999999888899999999 599999999877644
No 19
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=96.80 E-value=0.00051 Score=52.56 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=43.0
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
|.+|+..|..+|..-|.|.|.|.+.-.-+|+|++-+. +|++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~--~~~li~~f~~~ 53 (55)
T 1pfb_A 6 AEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL--DRRLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC--STHHHHHHHTS
T ss_pred EEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC--CHHHHHHHHHh
Confidence 4689999999999999999999988888999999875 69999999764
No 20
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=96.78 E-value=0.0007 Score=51.60 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=43.7
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
|.+|+..|..+|..-|-|.|.|.+.-.-+|+|++-+. ||++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~--~~~li~~f~~R 53 (54)
T 3i91_A 6 AEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL--DARLLAAFEER 53 (54)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC--CHHHHHHHHHC
T ss_pred EEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC--CHHHHHHHHhc
Confidence 4689999999999999999999998888999999887 69999999874
No 21
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.0013 Score=53.46 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=53.3
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHhccCCCCCCCC
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSKPK 384 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~~~kk~~~~ 384 (523)
.|.+|+..|..+|..-|-|.|.+.+.-.-+|+|++-+. +|++|.+|+++...+...+.++.
T Consensus 12 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~--~~~li~~f~~~~~~k~~~~~~p~ 72 (74)
T 2d9u_A 12 AAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL--DPRLLLAFQKKEHEKEVQNSGPS 72 (74)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCC--CHHHHHHHHHHHHHHCCSSCCCC
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCC--CHHHHHHHHHhhhhhHHhhcCCC
Confidence 46799999999999999999999998889999999876 48999999999988877776654
No 22
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=96.64 E-value=0.00094 Score=50.92 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=42.9
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
|.+|+..|..+|..-|-|.|.|.+.-.-+|+|++-+. +|++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~--~~~li~~f~~r 53 (54)
T 3h91_A 6 AECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL--DPRLLLAFQKK 53 (54)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC--SHHHHHHHHC-
T ss_pred EEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCC--CHHHHHHHHhc
Confidence 4689999999999999999999998888999999886 69999999875
No 23
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=96.53 E-value=0.0021 Score=51.50 Aligned_cols=54 Identities=13% Similarity=0.353 Sum_probs=47.5
Q ss_pred Cccceeeccccc-Cccc-eEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHhcc
Q 009898 322 PITGIIKSRKLQ-GKEC-FEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 376 (523)
Q Consensus 322 ~~~~I~k~R~~~-gv~c-~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~ 376 (523)
.|.+|+..|..+ |..- |-|.|.|.+.-.-||+|++-+. .||++|.+|+++..+.
T Consensus 10 ~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~-~~~~li~~f~~~~~~~ 65 (70)
T 1g6z_A 10 EVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS-GCSAVLAEWKRRKRRL 65 (70)
T ss_dssp CCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS-SCHHHHHHHHHHHTTT
T ss_pred EEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh-hhHHHHHHHHHhcccc
Confidence 456899999988 8888 9999999988889999999886 8999999999987764
No 24
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=96.50 E-value=0.0015 Score=52.52 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=45.3
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHH
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 373 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 373 (523)
.|-+|+..|..+|..-|-|.|.|.+.-.-||+|++-+ .||++|.+|++++
T Consensus 18 ~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL--~c~~lI~~F~~~~ 67 (69)
T 1q3l_A 18 AVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL--DCQDLIQQYEASR 67 (69)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHHHC
T ss_pred EEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC--CCHHHHHHHHHHc
Confidence 4579999999999999999999999888899999998 4999999998864
No 25
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=96.45 E-value=0.0024 Score=52.30 Aligned_cols=60 Identities=27% Similarity=0.477 Sum_probs=49.8
Q ss_pred Cccceeeccc-ccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHhccCCCCCCC
Q 009898 322 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSKP 383 (523)
Q Consensus 322 ~~~~I~k~R~-~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~~~kk~~~ 383 (523)
.|.+|+..|. .+|..-|-|.|.+.+.-.-+|+|++-+. .||++|.+|+++.+.+ +|+..+
T Consensus 15 ~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~-~~~~li~~f~~~~~~k-~k~~~p 75 (78)
T 2dnt_A 15 EVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV-NCEEYIHDFNRRHTEK-QKESGP 75 (78)
T ss_dssp CCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT-TCHHHHHHHHHHHSCS-CSCCCC
T ss_pred EEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH-hHHHHHHHHHhhhhcc-ccccCC
Confidence 4679999997 6898899999999998889999998875 5899999999988764 344443
No 26
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=96.39 E-value=0.0033 Score=73.46 Aligned_cols=94 Identities=14% Similarity=0.248 Sum_probs=60.4
Q ss_pred CCCcccC----cchHHHHHHHHHHc---------CCeeEEecCCCceEeeccc------EEEEEc-cCCC---------C
Q 009898 73 GVPCLEG----VEEAEAQCALLNLE---------SLCDGCFSSDSDIFLFGAR------TVYRDI-WLGE---------R 123 (523)
Q Consensus 73 GIp~i~A----P~EAEAqcA~L~~~---------G~vdaViS~DsD~llfG~~------~Vir~~-~~~~---------~ 123 (523)
++.++.+ |||+|.-|.-..+. +....|++.|+|++++|-. .++|.- .++. .
T Consensus 163 ~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~~~ 242 (1155)
T 3pie_A 163 NVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLET 242 (1155)
T ss_pred ccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCccccccccccc
Confidence 4455553 79999876654432 3577999999999999842 356642 1111 1
Q ss_pred ceEEEEeHHHHHHHh-------------CCC--h--hHHHHHHHHhCCCCCCCCCCCcHH
Q 009898 124 GYVVCYEMDDIERKL-------------GFG--R--NSLITLALLLGSDYSQGVRGLGPE 166 (523)
Q Consensus 124 ~~v~~y~~~~i~~~l-------------gl~--r--~qlidlaiL~G~DY~pGVpGIG~k 166 (523)
..+..++..-+.+.+ .++ | +.||.+|.|+|+||+|.+|.+.+.
T Consensus 243 ~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~ 302 (1155)
T 3pie_A 243 QNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLK 302 (1155)
T ss_pred CCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCcC
Confidence 234566664443321 122 2 577889999999999999988643
No 27
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=96.36 E-value=0.0017 Score=52.68 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=42.8
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
.|-+|+..|..+|..-|-|.|.|.+.-.-+|+|++-+. ||++|.+|+++
T Consensus 22 eVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~--~~~lI~~F~~~ 70 (72)
T 1pdq_A 22 AAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL--DRRLIDIYEQT 70 (72)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC--STHHHHHHC--
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC--CHHHHHHHHHh
Confidence 45799999999999999999999988888999999875 79999999765
No 28
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=96.25 E-value=0.0091 Score=68.07 Aligned_cols=93 Identities=13% Similarity=0.237 Sum_probs=61.3
Q ss_pred CCCcccC----cchHHHHHHHHHHc---------CCeeEEecCCCceEeeccc------EEEEEc-cCCC----------
Q 009898 73 GVPCLEG----VEEAEAQCALLNLE---------SLCDGCFSSDSDIFLFGAR------TVYRDI-WLGE---------- 122 (523)
Q Consensus 73 GIp~i~A----P~EAEAqcA~L~~~---------G~vdaViS~DsD~llfG~~------~Vir~~-~~~~---------- 122 (523)
++.+|.+ |||.|.-|--..+. +...+|++.|+|++++|-. .|+|.- +.+.
T Consensus 195 ~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~ 274 (899)
T 3fqd_A 195 NVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEER 274 (899)
T ss_dssp TCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTT
T ss_pred cceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhh
Confidence 5556654 79999976654431 3678999999999999842 467632 1100
Q ss_pred -----------------CceEEEEeHHHHHH----HhCC-------Ch----hHHHHHHHHhCCCCCCCCCCCcH
Q 009898 123 -----------------RGYVVCYEMDDIER----KLGF-------GR----NSLITLALLLGSDYSQGVRGLGP 165 (523)
Q Consensus 123 -----------------~~~v~~y~~~~i~~----~lgl-------~r----~qlidlaiL~G~DY~pGVpGIG~ 165 (523)
...+.+++..-+.+ ++.+ +- +.||.+|.|+|+||+|.+|.+-+
T Consensus 275 ~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 275 LGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp TTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred ccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 02245666654443 3332 22 58999999999999999997654
No 29
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=95.98 E-value=0.0024 Score=51.88 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=44.0
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
.|-+|+..|..+|..-|-|.|.|.+.-.-+|+|++-+. ||++|.+|+++
T Consensus 23 eVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~--~~~li~~F~~~ 71 (73)
T 2k1b_A 23 AVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL--DPRLVMAYEEK 71 (73)
T ss_dssp CCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS--CHHHHHHHHTS
T ss_pred EEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC--CHHHHHHHHHh
Confidence 46799999999999999999999988888999999876 69999999864
No 30
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=95.83 E-value=0.008 Score=46.92 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=43.7
Q ss_pred CccceeecccccCcc-ceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHH
Q 009898 322 PITGIIKSRKLQGKE-CFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 373 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~-c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 373 (523)
.|.+|+..|..+|.. -|-|.|.|.+.-.-||+|++-+ .||++|.+|..++
T Consensus 9 ~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~~~~~r 59 (61)
T 3g7l_A 9 EVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL--FGAEKVLKKWKKR 59 (61)
T ss_dssp EEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGG--TBCHHHHHHHHHC
T ss_pred EEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHC--CCHHHHHHHHHHh
Confidence 356899999998887 8999999999888899999998 4999999997764
No 31
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=95.36 E-value=0.005 Score=48.51 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred CccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHH
Q 009898 322 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 373 (523)
Q Consensus 322 ~~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 373 (523)
.|.+|+..|..+|..-|-|.|.+.+.-.-+|+|++-+. +|++|.+|+++.
T Consensus 12 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~--~~~li~~f~~~~ 61 (64)
T 2dnv_A 12 AAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL--DARLLAAFESGP 61 (64)
T ss_dssp CCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCC--CHHHHHHHHCCT
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCC--CHHHHHHHHHHc
Confidence 45799999999999999999999998888999999876 479999998643
No 32
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=95.14 E-value=0.02 Score=48.37 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=45.4
Q ss_pred CCccceeeccc--ccCccceEEeecCCCC-ceeeceehhhhhhhcchhHHHHHHHHhc
Q 009898 321 CPITGIIKSRK--LQGKECFEVSWEESYG-LKSSVVPADLIESACPEKIVEFEERRAL 375 (523)
Q Consensus 321 ~~~~~I~k~R~--~~gv~c~ei~w~~~~~-l~~~~vP~~lv~~a~Pe~v~~f~~~~~~ 375 (523)
..|.+|+..|. ++|..-|-|.|.|.+. -.-+|+|++=+. -||++|.+|+++.+.
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~-~c~~li~~f~~~~~~ 87 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCS-GCKQLIEAYWNEHGG 87 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGG-TSHHHHHHHHHHHTC
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHh-hHHHHHHHHHHHcCC
Confidence 35689999995 5799999999999875 456899998874 599999999998875
No 33
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=95.00 E-value=0.019 Score=46.71 Aligned_cols=51 Identities=12% Similarity=0.278 Sum_probs=44.1
Q ss_pred Cccceeeccc-ccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHH
Q 009898 322 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 373 (523)
Q Consensus 322 ~~~~I~k~R~-~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 373 (523)
.|.+|+..|. .+|..-|-|.|.|.+.-.-||+|++=+. .|+++|.+|++++
T Consensus 23 eVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~ 74 (75)
T 2rsn_A 23 EVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKVLKKWKKRK 74 (75)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT-TTHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc-ChHHHHHHHHHhh
Confidence 4679999996 4688899999999988888999999775 4899999999874
No 34
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=93.59 E-value=0.0071 Score=50.00 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=44.1
Q ss_pred Cccceeeccc-ccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHh
Q 009898 322 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRA 374 (523)
Q Consensus 322 ~~~~I~k~R~-~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~ 374 (523)
.|.+|+..|. .+|..-|-|.|.|.+.-.-||+|++=+. .||++|.+|+++.+
T Consensus 25 eVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~~ 77 (81)
T 4hae_A 25 EVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL-HCEEFIDEFNGLHM 77 (81)
T ss_dssp EEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE-ECCCCCCTTCSSCC
T ss_pred EEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh-hhHHHHHHHHHHcc
Confidence 4679999886 5788899999999998888999998775 59999999976543
No 35
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=90.72 E-value=0.036 Score=42.28 Aligned_cols=45 Identities=18% Similarity=0.408 Sum_probs=38.2
Q ss_pred ccceeeccccc-Ccc-ceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 323 ITGIIKSRKLQ-GKE-CFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 323 ~~~I~k~R~~~-gv~-c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
|-+|+..|..+ |.. -|-|.|.|.+ .-||+|++=+. |++|.+|+++
T Consensus 3 VE~Ild~r~~~~g~~~~YlVKWkgy~--~~TWEp~~nL~---~~li~~f~~~ 49 (54)
T 1x3p_A 3 AESVIGKRVGDDGKTIEYLVKWTDMS--DATWEPQDNVD---STLVLLYQQQ 49 (54)
T ss_dssp SSCCCCBSSCSSSCCCCBCCCCSSSS--SCSCSTTCCSS---SSSHHHHTSS
T ss_pred EEEEEEEEEcCCCcEEEEEEEECCCC--cCCccchHHCC---HHHHHHHHHH
Confidence 45889999887 888 8999999973 57899999875 9999999764
No 36
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.94 E-value=0.19 Score=39.96 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=41.0
Q ss_pred Cccceeecccc----cC--ccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHH
Q 009898 322 PITGIIKSRKL----QG--KECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 373 (523)
Q Consensus 322 ~~~~I~k~R~~----~g--v~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 373 (523)
.|.+|+..|.+ +| ..=|=|.|.+.+--..||+|++-+ .|++|.+|++..
T Consensus 13 ~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l---~~~~I~~f~~r~ 67 (68)
T 2epb_A 13 EVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV---DPAKVKEFESLQ 67 (68)
T ss_dssp CCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS---CHHHHHHHHHHC
T ss_pred EEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc---CHHHHHHHHHhh
Confidence 46799998853 46 667899999999999999999887 589999999753
No 37
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=89.93 E-value=0.2 Score=39.06 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=20.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 009898 158 QGVRGLGPESACQIVKSVGDNV 179 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~g~~~ 179 (523)
..|||||++++..|++.||+..
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~ 28 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIA 28 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHH
T ss_pred HcCCCCCHHHHHHHHHHcCCHH
Confidence 4799999999999999999953
No 38
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=89.00 E-value=0.22 Score=47.24 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=26.7
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHHHhcCch
Q 009898 159 GVRGLGPESACQIVKSVGDNVVLQRIASEGLS 190 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~~iL~~~~~~~~~ 190 (523)
+|+|||||+|..|+..||+..+.+.+.....+
T Consensus 76 ~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~ 107 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPPRLLARALLEGDAR 107 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred cCCCcCHHHHHHHHHhCChHHHHHHHHhCCHH
Confidence 49999999999999999998877777654433
No 39
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=88.63 E-value=0.33 Score=37.94 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=19.4
Q ss_pred CCCCCCcHHHHHHHHHHhCCH
Q 009898 158 QGVRGLGPESACQIVKSVGDN 178 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~g~~ 178 (523)
.||||||+++|..|+..||+.
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~ 37 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSV 37 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSH
T ss_pred cCCCCCCHHHHHHHHHHcCCH
Confidence 389999999999999999984
No 40
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=88.02 E-value=0.66 Score=36.56 Aligned_cols=49 Identities=27% Similarity=0.463 Sum_probs=42.7
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHH
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 373 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 373 (523)
+.+|+..+..+|--.|=|.|.+.++. .+||+..+...||.+|-+|-++.
T Consensus 15 ~ekI~g~~~~~Gel~fLvKWKg~~~~--d~Vpa~e~n~~~PqlVI~fYE~~ 63 (65)
T 3kup_A 15 PERIIGATDSSGELMFLMKWKDSDEA--DLVLAKEANMKCPQIVIAFYEER 63 (65)
T ss_dssp EEEEEEEECTTSSCEEEEEETTCSCC--EEEEHHHHHHHCHHHHHHHHHHH
T ss_pred eeEEeeEEcCCCcEEEEEEECCCChh--heEEHHHHHhhChHHHHHHHHHh
Confidence 35899999999999999999998864 48999999999999999996653
No 41
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=88.01 E-value=0.22 Score=39.98 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.5
Q ss_pred CCCCCCcHHHHHHHHHHhCCH
Q 009898 158 QGVRGLGPESACQIVKSVGDN 178 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~g~~ 178 (523)
.+|||||+++|.+|++.||+.
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl 47 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGL 47 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCH
T ss_pred hcCCCCCHHHHHHHHHHcCCH
Confidence 389999999999999999984
No 42
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=87.70 E-value=0.35 Score=46.30 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=26.9
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHHHhcCch
Q 009898 159 GVRGLGPESACQIVKSVGDNVVLQRIASEGLS 190 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~~iL~~~~~~~~~ 190 (523)
+|+|||||+|..|+..|++..+.+.+.+...+
T Consensus 77 ~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~ 108 (203)
T 1cuk_A 77 KTNGVGPKLALAILSGMSAQQFVNAVEREEVG 108 (203)
T ss_dssp HSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred cCCCcCHHHHHHHHhhCChHHHHHHHHhCCHH
Confidence 39999999999999999998887777665443
No 43
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=87.68 E-value=0.36 Score=39.55 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=19.4
Q ss_pred CCCCCCcHHHHHHHHHHhCCH
Q 009898 158 QGVRGLGPESACQIVKSVGDN 178 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~g~~ 178 (523)
.+|||||+++|.+|++.||+.
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl 42 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSL 42 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBH
T ss_pred HcCCCCCHHHHHHHHHHCCCH
Confidence 489999999999999999984
No 44
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=87.61 E-value=0.18 Score=48.76 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHhCCChhHHHH-HHHHhCCCCCCCCCCCcHHHHHHHHHHhCCHHHHHHHHhcCchHH
Q 009898 135 ERKLGFGRNSLIT-LALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFV 192 (523)
Q Consensus 135 ~~~lgl~r~qlid-laiL~G~DY~pGVpGIG~ktA~kLl~~~g~~~iL~~~~~~~~~~~ 192 (523)
...||+....--+ |-.|.. |+|||||+|..++..|+...+.+.+.....+..
T Consensus 73 ~~LyGF~~~~Er~lf~~L~s------v~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L 125 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLLS------VSGVGPRLAMAALAVHDAPALRQVLADGNVAAL 125 (212)
T ss_dssp EEEEEESSHHHHHHHHHHHT------STTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred cceEecCcHHHHHHHHHhcC------cCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHH
Confidence 4457764433333 333432 999999999999999999777666655444333
No 45
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=87.05 E-value=0.48 Score=39.18 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=19.6
Q ss_pred CCCCCcHHHHHHHHHHhCCHH
Q 009898 159 GVRGLGPESACQIVKSVGDNV 179 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~~ 179 (523)
.|||||++++..|++.||+..
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl~ 42 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNIA 42 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCHH
T ss_pred hCCCCCHHHHHHHHHHcCCHH
Confidence 799999999999999999954
No 46
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=85.99 E-value=0.5 Score=38.99 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=18.8
Q ss_pred CCCCCcHHHHHHHHHHhCCH
Q 009898 159 GVRGLGPESACQIVKSVGDN 178 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~ 178 (523)
+|||||+++|.+|++.||+.
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~ 55 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSL 55 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSH
T ss_pred cCCCCCHHHHHHHHHHCCCH
Confidence 79999999999999999984
No 47
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=84.58 E-value=0.61 Score=44.07 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=45.0
Q ss_pred Cccceeeccc---ccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 322 PITGIIKSRK---LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 322 ~~~~I~k~R~---~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
.|.+|+..|. ..|..-|=|.|.+.+-=..+|+|++.+...||++|.+|+++
T Consensus 132 ~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 132 IVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR 185 (187)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence 3568999887 68888999999999877899999999988999999999875
No 48
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=84.02 E-value=0.5 Score=44.29 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=44.4
Q ss_pred Cccceeeccc-----ccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 322 PITGIIKSRK-----LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 322 ~~~~I~k~R~-----~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
.|.+|+..|. ..|..-|=|.|.+.+--..+|+|++.+...||++|.+|+++
T Consensus 122 ~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~r 177 (177)
T 2h1e_A 122 VPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQKK 177 (177)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC-
T ss_pred eeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHhC
Confidence 3568999995 68889999999999988899999999987899999999753
No 49
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=83.87 E-value=0.73 Score=36.32 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=42.0
Q ss_pred Cccceeeccc-ccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHH
Q 009898 322 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEE 371 (523)
Q Consensus 322 ~~~~I~k~R~-~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~ 371 (523)
.|.+|+..|. .+|..=|=|.|.+.+.=..+|+|+++....+++.|.+|.+
T Consensus 13 ~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 13 MIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp CCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 4579999997 5788888899999999999999999766666666999975
No 50
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=83.14 E-value=1.1 Score=36.06 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=43.6
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHH
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 373 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 373 (523)
+.+|+..+..+|--.|=|.|.+.+. .++||+..+...||.+|-+|-+..
T Consensus 18 ~ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FYE~~ 66 (74)
T 2fmm_A 18 PERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEER 66 (74)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHTT
T ss_pred ceEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHHHHh
Confidence 4689999999999999999999886 679999999999999999997753
No 51
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=82.63 E-value=1.1 Score=36.32 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=39.3
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHH
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 372 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 372 (523)
+.+|+.....+|--.|=|.|.+.++ ..+||+..+...||.+|-+|-+.
T Consensus 25 ~EkIlg~t~~~Gel~fLVKWKg~~e--~dlVpa~ean~k~PqlVI~FYEe 72 (75)
T 3i3c_A 25 PEKIIGATDSCGDLMFLMKWKDTDE--ADLVLAKEANVKCPQIVIAFYEE 72 (75)
T ss_dssp EEEEEEEEC---CCEEEEEETTSSC--EEEEEHHHHHHHCHHHHHHHHTC
T ss_pred eeEEeeEEccCCcEEEEEEECCCCh--hceEEHHHHhhhChHHHHHHHHH
Confidence 4689988999999999999999886 45899999999999999999543
No 52
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=79.80 E-value=1.8 Score=35.37 Aligned_cols=50 Identities=28% Similarity=0.521 Sum_probs=43.1
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHh
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRA 374 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~ 374 (523)
+..|+.....+|--.|=|.|.+..+ ..+||+..+...||.+|-+|-+..-
T Consensus 12 ~EkI~g~~~~~Gel~fLvKWKg~~~--~dlVpa~ean~k~PqlVI~FYE~~l 61 (78)
T 3q6s_A 12 PERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEERL 61 (78)
T ss_dssp EEEEEEEECTTSSCEEEEEETTCSC--EEEEEHHHHHHHSHHHHHHHHHTTE
T ss_pred ceEEeeEEcCCCcEEEEEEECCCCh--hheEeHHHHHhhChHHHHHHHHHhc
Confidence 3589988999999999999999985 4589999999999999999966543
No 53
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=79.31 E-value=1.1 Score=43.54 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.3
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 009898 158 QGVRGLGPESACQIVKSVGDNV 179 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~g~~~ 179 (523)
.||||||+++|..|++.||+.+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~ 192 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLE 192 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHH
T ss_pred cCCCCcCHHHHHHHHHHcCCHH
Confidence 6999999999999999999954
No 54
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=74.89 E-value=2.7 Score=35.07 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=42.8
Q ss_pred ccceeecccccCccceEEeecCCCCceeeceehhhhhhhcchhHHHHHHHHh
Q 009898 323 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRA 374 (523)
Q Consensus 323 ~~~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~ 374 (523)
+..|+.....+|---|=|.|.+.++. .+||+..+...||.+|-+|-++..
T Consensus 28 ~EkIlgat~~~Gel~fLVKWKg~~e~--DlVpa~ean~k~PqlVI~FYEerl 77 (87)
T 3p7j_A 28 AEKILGASDNNGRLTFLIQFKGVDQA--EMVPSSVANEKIPRMVIHFYEERL 77 (87)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCSSC--EEEEHHHHHHHCHHHHHHHHHHTC
T ss_pred ceEEeeEEccCCcEEEEEEECCCCcc--ceEeHHHHhhhChHHHHHHHHHhc
Confidence 45888888899998999999998864 479999999999999999966543
No 55
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=67.10 E-value=3.4 Score=39.14 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=19.0
Q ss_pred CCCCCcHHHHHHHHHHhCCH
Q 009898 159 GVRGLGPESACQIVKSVGDN 178 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~ 178 (523)
+|||||+++|..|++.||+.
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~ 185 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSL 185 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSH
T ss_pred cCCCCCHHHHHHHHHHcCCH
Confidence 89999999999999999994
No 56
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=65.56 E-value=1.3 Score=43.16 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCHH
Q 009898 158 QGVRGLGPESACQIVKSVGDNV 179 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~g~~~ 179 (523)
.||||||+++|..|++.||+.+
T Consensus 176 ~~IpGIG~k~ak~Ll~~FGSl~ 197 (226)
T 3c65_A 176 DDIPGVGEKRKKALLNYFGSVK 197 (226)
T ss_dssp ----------------------
T ss_pred cccCCCCHHHHHHHHHHhCCHH
Confidence 5999999999999999999953
No 57
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=57.62 E-value=6.3 Score=34.50 Aligned_cols=52 Identities=8% Similarity=0.187 Sum_probs=40.6
Q ss_pred ceeecccccCccceEEeecCCCCceeeceehhhhhh---hcchhHHHHHHHHhcc
Q 009898 325 GIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES---ACPEKIVEFEERRALR 376 (523)
Q Consensus 325 ~I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~~---a~Pe~v~~f~~~~~~~ 376 (523)
.|+..|..+|..=|=|.|.|.+..--+|+|.+-+.. ....+|..|.++-...
T Consensus 47 ~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk~~e~ 101 (115)
T 2b2y_C 47 AGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET 101 (115)
T ss_dssp TTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC-----
T ss_pred cccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999998764 2346999998875443
No 58
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=52.98 E-value=10 Score=35.66 Aligned_cols=50 Identities=8% Similarity=0.185 Sum_probs=42.7
Q ss_pred eeecccccCccceEEeecCCCCceeeceehhhhh---hhcchhHHHHHHHHhc
Q 009898 326 IIKSRKLQGKECFEVSWEESYGLKSSVVPADLIE---SACPEKIVEFEERRAL 375 (523)
Q Consensus 326 I~k~R~~~gv~c~ei~w~~~~~l~~~~vP~~lv~---~a~Pe~v~~f~~~~~~ 375 (523)
++..|...|...|=|.|.|.+.+-.+|+|.+-+. ...+.++..|.++...
T Consensus 48 ~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~~~ 100 (187)
T 2b2y_A 48 GFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQE 100 (187)
T ss_dssp TCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHH
T ss_pred ccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhhhc
Confidence 3577888999999999999999999999999987 3567899999988764
No 59
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=48.76 E-value=8 Score=30.34 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHHh
Q 009898 158 QGVRGLGPESACQIVKSV 175 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~ 175 (523)
..|||||+++|.+|+..+
T Consensus 30 ~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 30 MALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TTSTTCCHHHHHHHHHTC
T ss_pred HhCCCCCHHHHHHHHHHc
Confidence 368999999999999865
No 60
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=46.92 E-value=12 Score=39.73 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.2
Q ss_pred CCCCCcHHHHHHHHHHhCCHH
Q 009898 159 GVRGLGPESACQIVKSVGDNV 179 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~~ 179 (523)
.||||||++|..|+..||+..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe 492 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYS 492 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHH
T ss_pred ccCCCCHHHHHHHHHHhcCHH
Confidence 689999999999999999953
No 61
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=45.91 E-value=24 Score=33.87 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.4
Q ss_pred CCCCCcHHHHHHHHHH
Q 009898 159 GVRGLGPESACQIVKS 174 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~ 174 (523)
-+||||+|+|.+|+-.
T Consensus 30 ~LPGIG~KsA~RlA~h 45 (212)
T 3vdp_A 30 KLPGIGPKTAQRLAFF 45 (212)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 6899999999999865
No 62
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=40.59 E-value=33 Score=33.36 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.4
Q ss_pred CCCCCcHHHHHHHHHH
Q 009898 159 GVRGLGPESACQIVKS 174 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~ 174 (523)
-+||||+|+|.+|+-.
T Consensus 16 ~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAFH 31 (228)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 6899999999999865
No 63
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=36.01 E-value=17 Score=34.77 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.8
Q ss_pred CCCCCCCcHHHHHHHHHHhCC
Q 009898 157 SQGVRGLGPESACQIVKSVGD 177 (523)
Q Consensus 157 ~pGVpGIG~ktA~kLl~~~g~ 177 (523)
+..|||||+|||.+|+.++.+
T Consensus 125 L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 125 LTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHHTT
T ss_pred HhhCCCCCHHHHHHHHHHHHH
Confidence 359999999999999977654
No 64
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=34.60 E-value=18 Score=33.98 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=18.2
Q ss_pred CCCCCCCCCcHHHHHHHHHHhC
Q 009898 155 DYSQGVRGLGPESACQIVKSVG 176 (523)
Q Consensus 155 DY~pGVpGIG~ktA~kLl~~~g 176 (523)
+.+..|||||+|+|.+++..+.
T Consensus 107 ~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHHH
Confidence 3456999999999999987664
No 65
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=31.65 E-value=22 Score=31.83 Aligned_cols=15 Identities=53% Similarity=0.516 Sum_probs=13.8
Q ss_pred CCCCCcHHHHHHHHH
Q 009898 159 GVRGLGPESACQIVK 173 (523)
Q Consensus 159 GVpGIG~ktA~kLl~ 173 (523)
.+|||||++|.++++
T Consensus 67 ~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVK 81 (134)
T ss_dssp GSTTCTHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 589999999999995
No 66
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=31.41 E-value=25 Score=39.22 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=13.7
Q ss_pred CCCCCcHHHHHHHHHHhCCH
Q 009898 159 GVRGLGPESACQIVKSVGDN 178 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~ 178 (523)
||||||+++|..|++.||+.
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl 535 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTL 535 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSH
T ss_pred cccCccHHHHHHHHHHcCCH
Confidence 66777777777777777663
No 67
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=30.96 E-value=10 Score=37.02 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=0.0
Q ss_pred CCCCCCcHHHHHHHHHH-hCCHH
Q 009898 158 QGVRGLGPESACQIVKS-VGDNV 179 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~-~g~~~ 179 (523)
..||||||++|..|+.. |++.+
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve 40 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVE 40 (241)
T ss_dssp -----------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHH
Confidence 48999999999999998 77743
No 68
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=30.27 E-value=23 Score=29.81 Aligned_cols=15 Identities=53% Similarity=0.516 Sum_probs=14.3
Q ss_pred CCCCCcHHHHHHHHH
Q 009898 159 GVRGLGPESACQIVK 173 (523)
Q Consensus 159 GVpGIG~ktA~kLl~ 173 (523)
.+||||+++|.+++.
T Consensus 30 ~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 30 QYRGLYPTLAKLIVK 44 (97)
T ss_dssp GSTTCTTHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 789999999999998
No 69
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=30.04 E-value=33 Score=33.99 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.1
Q ss_pred CCCCCcHHHHHHHHHHhCCH-HHHHHHHhc
Q 009898 159 GVRGLGPESACQIVKSVGDN-VVLQRIASE 187 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~-~iL~~~~~~ 187 (523)
.||||+++.|..|++.|++. .+++.++..
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~ 270 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDKC 270 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 79999999999999999995 577777654
No 70
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=29.94 E-value=32 Score=37.44 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.7
Q ss_pred CCCCCCcHHHHHHHHHH-hCC-HHHHHH
Q 009898 158 QGVRGLGPESACQIVKS-VGD-NVVLQR 183 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~-~g~-~~iL~~ 183 (523)
-+|+|||||+|.+|+.. +.+ +++.+.
T Consensus 100 ~~v~GVGpk~A~~i~~~G~~s~edL~~a 127 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLAGIDSLERLREA 127 (578)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 48999999999999987 444 344444
No 71
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=28.87 E-value=12 Score=41.46 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHHHhCCHH
Q 009898 159 GVRGLGPESACQIVKSVGDNV 179 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~~ 179 (523)
||||||+++|..|++.||+.+
T Consensus 533 GIp~VG~~~ak~La~~Fgsle 553 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSLD 553 (615)
T ss_dssp ---------------------
T ss_pred CCCCCCHHHHHHHHHHcCCHH
Confidence 999999999999999999854
No 72
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.93 E-value=1e+02 Score=25.00 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCcccCcchHHHHHHHHHHcCCeeEEecCCCceEeecc
Q 009898 65 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 111 (523)
Q Consensus 65 ik~lL~~~GIp~i~AP~EAEAqcA~L~~~G~vdaViS~DsD~llfG~ 111 (523)
+..|.+.||++ +.|+|..++.|...|.+.|.|-.-..++.|..
T Consensus 33 l~~La~ll~ls----~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~ 75 (84)
T 1ufm_A 33 FEELGALLEIP----AAKAEKIASQMITEGRMNGFIDQIDGIVHFET 75 (84)
T ss_dssp HHHHHHHTTSC----HHHHHHHHHHHHHTTSSCEEEETTTTEEEECC
T ss_pred HHHHHHHHCcC----HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCC
Confidence 56677889987 77999999999999999999877676776643
No 73
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=27.87 E-value=29 Score=28.62 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHHh
Q 009898 158 QGVRGLGPESACQIVKSV 175 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~~ 175 (523)
..|||||+++|.+|+..+
T Consensus 43 ~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHH
Confidence 379999999999999765
No 74
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=27.34 E-value=38 Score=36.71 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=18.6
Q ss_pred CCCCCcHHHHHHHHHHh--CC-HHHHHHH
Q 009898 159 GVRGLGPESACQIVKSV--GD-NVVLQRI 184 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~--g~-~~iL~~~ 184 (523)
+|+|||||+|..++... .+ +++.+.+
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~ 125 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAAL 125 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 78999999999998874 34 3444444
No 75
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=26.83 E-value=42 Score=31.11 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=34.1
Q ss_pred cceEEeecCCCCceeeceehhhhhhhcchh--HHHHHHHHhc
Q 009898 336 ECFEVSWEESYGLKSSVVPADLIESACPEK--IVEFEERRAL 375 (523)
Q Consensus 336 ~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~--v~~f~~~~~~ 375 (523)
.-|=|.|.|...+-.+|+|.+-+.. ||.+ |..|.++...
T Consensus 47 ~EYlVKWKg~Sy~HnTWe~ee~L~~-~~glkKl~nf~kk~~~ 87 (177)
T 2h1e_A 47 YEFLIKWTDESHLHNTWETYESIGQ-VRGLKRLDNYCKQFII 87 (177)
T ss_dssp EEEEEEETTSCGGGCEEECHHHHCS-CTTHHHHHHHHHHHTH
T ss_pred eEEEEEECCCccccCeecCHHHHhh-chHHHHHHHHHHHhhh
Confidence 4577999999999999999999986 9998 9999887653
No 76
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=25.80 E-value=33 Score=38.30 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.0
Q ss_pred CCCCCcHHHHHHHHHHhCCH
Q 009898 159 GVRGLGPESACQIVKSVGDN 178 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g~~ 178 (523)
||||||+++|..|++.||+.
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl 530 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTM 530 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBH
T ss_pred ccCCccHHHHHHHHHHcCCH
Confidence 88888888888888888884
No 77
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=24.38 E-value=47 Score=36.45 Aligned_cols=38 Identities=18% Similarity=0.061 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCcccC------cchHHHHHHHHHH--c--C-CeeEEec
Q 009898 64 EAKALGLSLGVPCLEG------VEEAEAQCALLNL--E--S-LCDGCFS 101 (523)
Q Consensus 64 ~ik~lL~~~GIp~i~A------P~EAEAqcA~L~~--~--G-~vdaViS 101 (523)
+..+.|+.+|+|+..- ..|..+.+.++.. . . -+|||+=
T Consensus 241 e~l~~L~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVi 289 (586)
T 4glx_A 241 GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVI 289 (586)
T ss_dssp HHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEE
T ss_pred HHHHHHHHcCCCCccceeeeccHHHHHHHHHHHHHhhhcccccCCceEE
Confidence 3456678899987432 1244444444432 1 1 3677653
No 78
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=24.30 E-value=34 Score=32.39 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=16.2
Q ss_pred CCCCCCCcHHHHHHHHHHh
Q 009898 157 SQGVRGLGPESACQIVKSV 175 (523)
Q Consensus 157 ~pGVpGIG~ktA~kLl~~~ 175 (523)
+..|||||+|+|.+++..+
T Consensus 110 L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 110 LVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHTSTTCCHHHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHH
Confidence 4599999999999998654
No 79
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=23.89 E-value=32 Score=34.88 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHHH
Q 009898 158 QGVRGLGPESACQIVKS 174 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~ 174 (523)
-.|+|||||||.+|..+
T Consensus 101 ~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 101 TRVSGIGPSAARKFVDE 117 (335)
T ss_dssp TTSTTCCHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHc
Confidence 48999999999999887
No 80
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=23.62 E-value=33 Score=35.22 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=15.2
Q ss_pred CCCCCcHHHHHHHHHH
Q 009898 159 GVRGLGPESACQIVKS 174 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~ 174 (523)
.|+|||||||.+|.++
T Consensus 106 ~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQE 121 (360)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHc
Confidence 8999999999999887
No 81
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=22.97 E-value=34 Score=35.41 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=15.2
Q ss_pred CCCCCcHHHHHHHHHH
Q 009898 159 GVRGLGPESACQIVKS 174 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~ 174 (523)
.|+|||+|||.+|.++
T Consensus 125 ~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRM 140 (381)
T ss_dssp TSTTCCHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHc
Confidence 8999999999999987
No 82
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=22.63 E-value=35 Score=34.61 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHHHHH
Q 009898 158 QGVRGLGPESACQIVKS 174 (523)
Q Consensus 158 pGVpGIG~ktA~kLl~~ 174 (523)
..|+|||||||.+|..+
T Consensus 99 ~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HTSTTCCHHHHHHHHHT
T ss_pred hcCCCcCHHHHHHHHHc
Confidence 38999999999999887
No 83
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=21.59 E-value=39 Score=32.27 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=25.3
Q ss_pred hCCChhHHHHHHHHhC---CCCC--CCCCCCcHHHHHHHHHH
Q 009898 138 LGFGRNSLITLALLLG---SDYS--QGVRGLGPESACQIVKS 174 (523)
Q Consensus 138 lgl~r~qlidlaiL~G---~DY~--pGVpGIG~ktA~kLl~~ 174 (523)
..=+...|++|.--+| .+.- ..+||||+++|..+|..
T Consensus 110 V~~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 110 IKQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp HHTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHH
T ss_pred HHhchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHH
Confidence 3346678888755444 2332 48999999999999964
No 84
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=21.47 E-value=1.2e+02 Score=31.99 Aligned_cols=42 Identities=5% Similarity=-0.092 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCcccCcchHHHHHHHHHHcCCeeEEec
Q 009898 60 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 101 (523)
Q Consensus 60 ~~i~~ik~lL~~~GIp~i~AP~EAEAqcA~L~~~G~vdaViS 101 (523)
+-+.++.+-|+.+|++.+..-+++...+..|++.--++.|++
T Consensus 92 ~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 133 (482)
T 2xry_A 92 KGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVT 133 (482)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEE
Confidence 345677777888888888888888888888877544455554
No 85
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=21.15 E-value=65 Score=33.51 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=29.4
Q ss_pred CChhHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCC-HHHHHHHH
Q 009898 140 FGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVVLQRIA 185 (523)
Q Consensus 140 l~r~qlidlaiL~G~DY~pGVpGIG~ktA~kLl~~~g~-~~iL~~~~ 185 (523)
++.+.+.....|. -+||+|++++.+|++.||+ ..+++.+.
T Consensus 17 m~~~e~~~wL~L~------~~~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 17 LTEAQRIDWMRLI------RAENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp SCHHHHHHHHHHH------TSTTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHH------cCCCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 4555555544443 5789999999999999999 46777653
No 86
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=20.42 E-value=70 Score=24.90 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhc
Q 009898 495 DSETEKSPELERKARALRMFIASIRDDI 522 (523)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (523)
||+++|+.|+.+|-|++-.=+.-.|+++
T Consensus 5 ~~~~~~~ee~r~klR~IEvk~me~rD~L 32 (61)
T 2e62_A 5 SSGNGMDEEQRQKRRRIEVALIEYRETL 32 (61)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999998876666556543
No 87
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=20.11 E-value=44 Score=31.97 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=14.9
Q ss_pred CCCCCcHHHHHHHHHHhC
Q 009898 159 GVRGLGPESACQIVKSVG 176 (523)
Q Consensus 159 GVpGIG~ktA~kLl~~~g 176 (523)
.+||||+|||--++..+|
T Consensus 134 ~l~GVG~kTA~~vL~~~g 151 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTG 151 (219)
T ss_dssp HSTTCCHHHHHHHHHTTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 889999999987776554
Done!