BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009901
         (523 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KT8|A Chain A, Solution Nmr Structure Of The Cpe1231(468-535) Protein
           From Clostridium Perfringens, Northeast Structural
           Genomics Consortium Target Cpr82b
          Length = 76

 Score = 29.6 bits (65), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 243 ATSNGVANVNNSLNPASASSTASTIVGLLHQNS 275
           A   G+ NV++SLN    +ST+S ++G L  N+
Sbjct: 1   AEKTGIVNVSSSLNVREGASTSSKVIGSLSGNT 33


>pdb|2KYB|A Chain A, Solution Structure Of Cpr82g From Clostridium Perfringens.
           N Structural Genomics Consortium Target Cpr82g
          Length = 60

 Score = 29.3 bits (64), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 247 GVANVNNSLNPASASSTASTIVGLLHQNS 275
           G+ NV++SLN  S++ST+S ++G L  N+
Sbjct: 4   GIVNVSSSLNVRSSASTSSKVIGSLSGNT 32


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.124    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,219,105
Number of Sequences: 62578
Number of extensions: 304974
Number of successful extensions: 557
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 8
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)