Query 009901
Match_columns 523
No_of_seqs 123 out of 172
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 15:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009901.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009901hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uxxx_ b.18.1.10 (X:) Carbohy 27.5 20 0.0014 28.5 3.2 20 68-87 105-124 (125)
2 d1od3a_ b.18.1.10 (A:) Putativ 22.9 27 0.0019 27.7 3.2 19 68-86 112-130 (132)
3 d2ux0a1 d.17.4.7 (A:387-521) A 22.9 1.3E+02 0.0098 21.9 7.6 73 12-85 57-133 (135)
4 d1uy4a_ b.18.1.10 (A:) Putativ 18.5 37 0.0027 27.1 3.2 19 68-86 112-130 (132)
5 d2fh1a3 d.109.1.1 (A:629-741) 18.3 18 0.0013 28.7 1.1 41 12-52 10-51 (113)
6 d1svya_ d.109.1.1 (A:) Severin 16.5 22 0.0016 27.2 1.3 37 14-52 4-40 (102)
7 d1nn4a_ c.121.1.1 (A:) Alterna 15.1 14 0.001 32.0 -0.4 21 455-475 80-103 (159)
8 d1oh0a_ d.17.4.3 (A:) Delta-5- 14.8 2.1E+02 0.016 20.9 8.3 69 9-83 47-115 (125)
9 d3dxoa1 d.17.4.19 (A:1-117) Un 11.3 1.5E+02 0.011 22.1 4.9 25 58-82 87-111 (117)
10 d2gexa1 d.17.4.9 (A:2-139) Nog 10.6 3.1E+02 0.023 20.4 7.3 24 61-84 97-121 (138)
No 1
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]}
Probab=27.47 E-value=20 Score=28.51 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.1
Q ss_pred eEEEEeCCCCceeEEEEeec
Q 009901 68 QLRIVFSPDLKICSWEFCAR 87 (523)
Q Consensus 68 ~LRa~Fd~~LKIEswEF~t~ 87 (523)
+||+.|+-.+.|+||+|...
T Consensus 105 ~l~l~~~g~~Nid~~~F~~~ 124 (125)
T d1uxxx_ 105 DLYLVFSGPVNIDYFIFDSN 124 (125)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEeCCceEEEEEEEeC
Confidence 38889998999999999754
No 2
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=22.88 E-value=27 Score=27.74 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.5
Q ss_pred eEEEEeCCCCceeEEEEee
Q 009901 68 QLRIVFSPDLKICSWEFCA 86 (523)
Q Consensus 68 ~LRa~Fd~~LKIEswEF~t 86 (523)
+||++|+..+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nld~~~f~~ 130 (132)
T d1od3a_ 112 DIVLVFSGPVNVDWFVFSK 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEC
T ss_pred EEEEEEeCCceEEEEEEEe
Confidence 5788899899999999974
No 3
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.85 E-value=1.3e+02 Score=21.93 Aligned_cols=73 Identities=4% Similarity=-0.099 Sum_probs=41.7
Q ss_pred chhHHHHHHhhcCceEEEEEecCCceeecCCCeEEEEeCceEEEEEec-CeEEEEeeeEEEEe---CCCCceeEEEEe
Q 009901 12 VLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFE-QLRVVRDGQLRIVF---SPDLKICSWEFC 85 (523)
Q Consensus 12 vLPRyF~t~FeSGV~~mqLiLd~pRE~~lsNG~I~LEc~KAs~iy~Ye-gs~Vv~~G~LRa~F---d~~LKIEswEF~ 85 (523)
.+-.|+...+..+.....+.+...+..+..+...++ |.-.......+ +..+...++.+.+| +...||-..|..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gddaa~~-~~~~~~~~~~~~g~~~~~~~r~T~V~~r~~g~Wkivh~H~S 133 (135)
T d2ux0a1 57 FHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACI-AYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCS 133 (135)
T ss_dssp HHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEEEE-EEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHhccCCcccEEEecceeEEEEcCcEEEE-EEEEEEEEeccCCceeeEeEEEEEEEEEECCEEEEEEEEec
Confidence 344556666666666555555555554555555333 33333333333 56666677777766 568888887764
No 4
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=18.51 E-value=37 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.5
Q ss_pred eEEEEeCCCCceeEEEEee
Q 009901 68 QLRIVFSPDLKICSWEFCA 86 (523)
Q Consensus 68 ~LRa~Fd~~LKIEswEF~t 86 (523)
.||+.|+..+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nid~~~F~~ 130 (132)
T d1uy4a_ 112 DIVLVFSGPVNVDNFIFSR 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEE
T ss_pred EEEEEEECCceEEEEEEEe
Confidence 5788898899999999974
No 5
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.25 E-value=18 Score=28.70 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=29.2
Q ss_pred chhHHHHHHhhcCceEEEEEe-cCCceeecCCCeEEEEeCce
Q 009901 12 VLPRLFKIKYESGTLEELLYV-DMPREYQNASGQIVLDYAKA 52 (523)
Q Consensus 12 vLPRyF~t~FeSGV~~mqLiL-d~pRE~~lsNG~I~LEc~KA 52 (523)
..||+|+....+|...+..+. +-.++...++...+|+|...
T Consensus 10 ~~prLf~~~~~~g~~~~~ev~~~~~q~dL~s~dvfILD~g~~ 51 (113)
T d2fh1a3 10 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQ 51 (113)
T ss_dssp CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSC
T ss_pred CCCEEEEEEcCCCCEEEEEEccCCCHHHCCCCceEEEECCCE
Confidence 349999988888877666653 34456556677778888875
No 6
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=16.49 E-value=22 Score=27.21 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=23.6
Q ss_pred hHHHHHHhhcCceEEEEEecCCceeecCCCeEEEEeCce
Q 009901 14 PRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKA 52 (523)
Q Consensus 14 PRyF~t~FeSGV~~mqLiLd~pRE~~lsNG~I~LEc~KA 52 (523)
||+|+......++-.++ +..++...++...+|++.+.
T Consensus 4 pRL~~v~G~~~~~~~ev--~~~~~~L~s~dvfILd~~~~ 40 (102)
T d1svya_ 4 PRLLHISGDKNAKVAEV--PLATSSLNSGDCFLLDAGLT 40 (102)
T ss_dssp CEEEEEECTTSCEEEEE--CSSGGGCBTTSEEEEECSSE
T ss_pred cEEEEEECCCceEEEEe--cCCHHHcCCCCeEEEEcCCE
Confidence 78888765554544433 55566566677778888763
No 7
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=15.15 E-value=14 Score=31.97 Aligned_cols=21 Identities=43% Similarity=0.680 Sum_probs=17.7
Q ss_pred CCCCCchhhhh---hhhhhccCCc
Q 009901 455 GGGLGQSAMVN---GIRAAMGNNS 475 (523)
Q Consensus 455 g~g~~~~~~~~---~~~~~~~nn~ 475 (523)
|-|+|.+.++| |||||+.++.
T Consensus 80 GtG~G~~IaANK~~GIRAa~~~d~ 103 (159)
T d1nn4a_ 80 GTGVGISIAANKFAGIRAVVCSEP 103 (159)
T ss_dssp SSSHHHHHHHHTSTTCCEEECSSH
T ss_pred CCchHHHHHHHhccCceeeeecch
Confidence 56899999999 9999988654
No 8
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=14.85 E-value=2.1e+02 Score=20.88 Aligned_cols=69 Identities=12% Similarity=0.035 Sum_probs=40.1
Q ss_pred CccchhHHHHHHhhcCceEEEEEecCCceeecCCCeEEEEeCceEEEEEecCeEEEEeeeEEEEeCCCCceeEEE
Q 009901 9 TVEVLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWE 83 (523)
Q Consensus 9 t~~vLPRyF~t~FeSGV~~mqLiLd~pRE~~lsNG~I~LEc~KAs~iy~Yegs~Vv~~G~LRa~Fd~~LKIEswE 83 (523)
+...|=+||...+..+-..... +... +..++.+.++. .......++-.+...|.-...||.+-||..+.
T Consensus 47 G~~~i~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~d~dGkI~~~~ 115 (125)
T d1oh0a_ 47 GREQIAAFYRQGLGGGKVRACL-TGPV---RASHNGCGAMP--FRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQ 115 (125)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEE-SSCC---EECSSSEEEEE--EEEEEESSSSEEEEEEEEEEEECTTSCEEEEE
T ss_pred cHHHHHHHHHHHHHhcccceEE-EEEE---EEcCCCEEEEE--EEEEeccccceEEEEEEEEEEECCCCeEEEEE
Confidence 3556778888888776443322 2211 12222222221 11222335688888888889999999997653
No 9
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.30 E-value=1.5e+02 Score=22.10 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=19.9
Q ss_pred ecCeEEEEeeeEEEEeCCCCceeEE
Q 009901 58 FEQLRVVRDGQLRIVFSPDLKICSW 82 (523)
Q Consensus 58 Yegs~Vv~~G~LRa~Fd~~LKIEsw 82 (523)
.++-.++.+|.=.+.|+.+.||..+
T Consensus 87 ~~~~~~~~~G~d~~~~~~dGkI~~~ 111 (117)
T d3dxoa1 87 SPDGDDVAGGTDVVSLNTEGRIDNV 111 (117)
T ss_dssp CTTSCEEEEEEEEEEECTTSSEEEE
T ss_pred cCCCCeEEEEEEEEEECCCCCEEEE
Confidence 3444577899999999999999664
No 10
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}
Probab=10.56 E-value=3.1e+02 Score=20.41 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=17.7
Q ss_pred eEEEEeeeEEEEeCCCCce-eEEEE
Q 009901 61 LRVVRDGQLRIVFSPDLKI-CSWEF 84 (523)
Q Consensus 61 s~Vv~~G~LRa~Fd~~LKI-EswEF 84 (523)
-.|...|.-...|+++-|| |+|++
T Consensus 97 ~~v~~~~~~~~~~~d~GkI~e~~~~ 121 (138)
T d2gexa1 97 RKVRWTYLEELRFSEAGKVVEHWDV 121 (138)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred cEEEEEEEEEEEEccCCEEEEEEEE
Confidence 4677778888888887788 55554
Done!