BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009902
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 360 bits (924), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 219/526 (41%), Positives = 300/526 (57%), Gaps = 54/526 (10%)
Query: 14 LDPEIRGSYLGLI--QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 71
L IRG+Y GL Q I +L +LGI VEL+PVF F + F + + N WGY
Sbjct: 191 LPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKG----LTNYWGYDP 246
Query: 72 INFFSPMSRYAAGG--GGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT 129
INFFSP RY++ G GG + + FK+MV LH AGIEVI+DVVYNHT E + P T
Sbjct: 247 INFFSPECRYSSTGCLGGQVLS---FKKMVNELHNAGIEVIIDVVYNHTAEGNHLGP-TL 302
Query: 130 SFRGIDNKVYYMV--DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRF 187
SFRGIDN YYM+ D L++ G GNTLN +HP V++++LDSLR+WV E HVDGFRF
Sbjct: 303 SFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRF 362
Query: 188 DLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC-RGLYLVGKFPNWDRWAE 246
DLA+ L R + I A+ +D ILS+ K+IAEPWD +G Y VG FP +WAE
Sbjct: 363 DLAAALARELYSVNMLNTFFI-ALQQDPILSQVKLIAEPWDVGQGGYQVGNFPY--QWAE 419
Query: 247 WNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLV 306
WNGKYRD +R+F +G+ +A R+ GS D+Y N + P+ SIN++ +HDGFTL DLV
Sbjct: 420 WNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYVTSHDGFTLEDLV 479
Query: 307 SYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPM 366
SYN KH +SWNCG EG T+D ++ R +Q +NF + L+VSQGTPM
Sbjct: 480 SYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLVSQGTPM 539
Query: 367 MLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGRED 426
+L GDE T+ GNNN++ D I F W L+ +K+ F ++I+F ++ F RE
Sbjct: 540 ILGGDELSRTQRGNNNAFCQDNEITWFDW-NLDERKSKFLEFVKKMIQFYRAHPAFRRER 598
Query: 427 FLN--------INDVTWH--------EDNWDNYDSKFLAFTLHDNNGADI---------- 460
+ + DVT++ E W + ++ + F L + +I
Sbjct: 599 YFQGKKLFGMPLKDVTFYTLEGREVDEKTWSS-PTQLVIFVLEGSVMDEINMYGERIADD 657
Query: 461 --YLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLES--PDDIVPEG 502
+ NA+ VKV PK +W V+ + L P++ + EG
Sbjct: 658 SFLIILNANPNNVKVKF----PKGKWELVISSYLREIKPEERIIEG 699
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 271 bits (694), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 222/405 (54%), Gaps = 20/405 (4%)
Query: 17 EIRGSY--LGLIQKIPHLLELGINAVELLPVFEF-DEMEFQRRRNPRDHMVNTWGYSTIN 73
EIRG+Y LG I +L +LGI A+ELLPV +F E QR + N WGY+ +
Sbjct: 171 EIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMG-----LSNYWGYNPVA 225
Query: 74 FFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRG 133
F+ YA P A EF++ +KALH AGIEVILD+V NH+ E D P S RG
Sbjct: 226 MFALHPAYACS---PETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLF-SLRG 281
Query: 134 IDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 193
IDN+ YY + G N+ GCGNTLN +HP V++ LR+WV HVDGFRFDLA+V+
Sbjct: 282 IDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVM 341
Query: 194 CRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWD-CRGLYLVGKFPNWDRWAEWNGKYR 252
R + PL AI +LS+ K+IAEPWD G Y VG FP +AEWN +R
Sbjct: 342 GRTPEFR--QDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFP--PLFAEWNDHFR 397
Query: 253 DDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKH 312
D R+F G A R + SSD+++ N R P +IN + AHDGFTL D V +N+KH
Sbjct: 398 DAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKH 457
Query: 313 XXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDE 372
+S N G EG + R + L++SQGTPM+L GDE
Sbjct: 458 NEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDE 517
Query: 373 YGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQ 417
+GH+++GNNN+Y D + W Q + + F + +I R+
Sbjct: 518 HGHSQHGNNNAYCQDNQLTWLDWSQASSGLTA---FTAALIHLRK 559
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 254 bits (650), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 197/581 (33%), Positives = 277/581 (47%), Gaps = 72/581 (12%)
Query: 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPR 60
++VR FT ++S + + RG+Y G K +L LG+ AVE LPV E N
Sbjct: 184 VHVRGFTEQDTS-IPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPN-S 241
Query: 61 DHMVNTWGYSTINFFSPMSRYA--AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT 118
D N WGY T N+FSP RYA GGP EF+ MV+A H AGI+V +DVVYNHT
Sbjct: 242 DANQNYWGYMTENYFSPDRRYAYNKAAGGPTA---EFQAMVQAFHNAGIKVYMDVVYNHT 298
Query: 119 NEA---DDANPYTT---SFRGIDNKVYY-MVDGTGQLLNYAGCGNTLNCNHPVVMELILD 171
E ++P T S+RG+DN YY + G + G G N + V LI+D
Sbjct: 299 AEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVD 358
Query: 172 SLRHWVVEYHVDGFRFDLASVLCRGT-----DGSPLNAP-------PLIRAIAKDAIL-- 217
SL +W VDGFRFDLASVL S N P +A + IL
Sbjct: 359 SLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILRE 418
Query: 218 ---------SRCKIIAEPWDCRG-LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKG 267
S + AEPW G Y +G FP W+EWNG +RD LR+ + + G
Sbjct: 419 FTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFP--QGWSEWNGLFRDSLRQ-AQNELGSMT 475
Query: 268 ILATR----ISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXX--XXXXX 321
I T+ SGSS+L++ + R P++SINFI HDG TL D+ S N +
Sbjct: 476 IYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSD 535
Query: 322 XXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN 381
+SW+ G T A + +R F M+S GTP+M GDEY T NN
Sbjct: 536 GGTSTNYSWDQGMSAGTGAAVDQRRAARTGMAFE---MLSAGTPLMQGGDEYLRTLQCNN 592
Query: 382 NSYGHDTAIN--NFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDN 439
N+Y D++ N + W T +++ Y F +I FR++ + + + +TW++ +
Sbjct: 593 NAYNLDSSANWLTYSW---TTDQSNFYTFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPS 649
Query: 440 --------WDNYDSKFLAFTLHDNNGAD---IYLAFNAHDFFVKVSLPPPPPKRQWFRVV 488
W+N + +A+ ++ + D IY+A+N V +LP PP QW+RV
Sbjct: 650 GAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVT 709
Query: 489 DT---NLESPDDIVPEGA---AGTGSTYNLSPYSSILLEAK 523
DT N + + P G G+TY S +LL +K
Sbjct: 710 DTCDWNDGASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK 750
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/446 (27%), Positives = 189/446 (42%), Gaps = 81/446 (18%)
Query: 3 VRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEFDEM 51
VR F+ D +SG+ + +G YL + I L ELGI V+L PV EF+ +
Sbjct: 440 VRDFSIDANSGM--KNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSI 497
Query: 52 EFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 111
+ P + WGY N+ P YA G + + E K+++++LH I V +
Sbjct: 498 D---ETQPDTY---NWGYDPRNYNVPEGAYATTPEGTARIT-ELKQLIQSLHQQRIGVNM 550
Query: 112 DVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 171
DVVYNHT + + F I + YY D G N +G GN HP+ + +LD
Sbjct: 551 DVVYNHTFDV-----MVSDFDKIVPQYYYRTDSNGNYTNGSGXGNEFATEHPMAQKFVLD 605
Query: 172 SLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWD--C 229
S+ +WV EYHVDGFRFDL ++L + T N + AI +L EPW
Sbjct: 606 SVNYWVNEYHVDGFRFDLMALLGKDTMAKISNE---LHAINPGIVL-----YGEPWTGGT 657
Query: 230 RGLYLVGKFPNWDRWAEWNGKYRDDLRK-------------FIKGDPGMKGILATRISGS 276
GL + G + D++R F GDP ++ + GS
Sbjct: 658 SGLSSDQLVTKGQQKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGVIGS 717
Query: 277 SDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEG 336
+ P +IN++ +HD TL+D +
Sbjct: 718 IQDF---TSAPSETINYVTSHDNMTLWDKIL----------------------------- 745
Query: 337 ETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWG 396
++ + +A R + + H + SQG P M G+E T+ GN+NSY ++N F W
Sbjct: 746 ASNPSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGNDNSYNAGDSVNQFDWS 805
Query: 397 QLETKKNSHYRFFSEVIKFRQSRRVF 422
+ K+ + +FS +I R F
Sbjct: 806 RKAQFKDV-FDYFSSMIHLRNQHPAF 830
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/458 (27%), Positives = 197/458 (43%), Gaps = 96/458 (20%)
Query: 2 NVRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEFDE 50
++R F+ E+SG+ +G YL L + + ++ ELG+ VELLPV +F
Sbjct: 221 HLRDFSIHENSGMIN--KGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVNDFAG 278
Query: 51 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 110
++ ++ P D WGY+ ++FF+P YA+ P E K+M+ LH G+ VI
Sbjct: 279 VDEEK---PLD--AYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVI 333
Query: 111 LDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 170
LDVV+NH + +++ P+ + G ++ D G+ N G GN + + + I
Sbjct: 334 LDVVFNHVYKRENS-PFEKTVPG----YFFRHDECGKPSNGTGVGNDIASERRMARKFIA 388
Query: 171 DSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR 230
D + +W+ EY+VDGFRFDL +L D + AK IL + E WD
Sbjct: 389 DCVVYWLEEYNVDGFRFDLLGIL----DIDTVLYMKEKATKAKPGIL----LFGEGWD-- 438
Query: 231 GLYLVGKFPNWDRWAEWN-------GKYRDDLRKFIKGD------------------PGM 265
L P+ + A N G + D R +KG+ M
Sbjct: 439 ---LATPLPHEQKAALANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVM 495
Query: 266 KGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXX 325
GI + SG L + +P SIN++ +HD T +D +S+
Sbjct: 496 HGIAGS--SGWKALAPIVP-EPSQSINYVESHDNHTFWDKMSF----------------- 535
Query: 326 XXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYG 385
E D RSRQ + L+ +QG P + G E+ T+ G NSY
Sbjct: 536 -------ALPQENDSRK----RSRQRLAVAIILL-AQGVPFIHSGQEFFRTKQGVENSYQ 583
Query: 386 HDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVF 422
+IN W + ET K++ HY +I R++ F
Sbjct: 584 SSDSINQLDWDRRETFKEDVHY--IRRLISLRKAHPAF 619
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 173/404 (42%), Gaps = 61/404 (15%)
Query: 2 NVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVFEF---DEMEFQRRR 57
+VR FT D + D + G++ I+K+ +L +LG+ ++LLPV + +E++ R
Sbjct: 465 HVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERL 524
Query: 58 N--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVY 115
+ + WGY N+FS Y++ P K EFK ++ +H G+ ILDVVY
Sbjct: 525 SDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVY 584
Query: 116 NHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 175
NHT + D F ++ Y+ +D G G G L H + L++DS+++
Sbjct: 585 NHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKY 636
Query: 176 WVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC----RG 231
V Y VDGFRFD+ + S A RA+ + I+ + E W
Sbjct: 637 LVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM-----LGEGWRTYAGDEN 688
Query: 232 LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR------ 285
+ +W + + + DD+R +K +G A G D+ + K
Sbjct: 689 MPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPT 748
Query: 286 -----KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDD 340
P I +I AHD TL+D+++ + K +
Sbjct: 749 NFEADSPGDVIQYIAAHDNLTLFDIIAQSIKK------------------------DPSK 784
Query: 341 ASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 384
A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 785 AENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 828
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 173/404 (42%), Gaps = 61/404 (15%)
Query: 2 NVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVFEF---DEMEFQRRR 57
+VR FT D + D + G++ I+K+ +L +LG+ ++LLPV + +E++ R
Sbjct: 158 HVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERL 217
Query: 58 N--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVY 115
+ + WGY N+FS Y++ P K EFK ++ +H G+ ILDVVY
Sbjct: 218 SDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVY 277
Query: 116 NHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 175
NHT + D F ++ Y+ +D G G G L H + L++DS+++
Sbjct: 278 NHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKY 329
Query: 176 WVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC----RG 231
V Y VDGFRFD+ + S A RA+ + I+ + E W
Sbjct: 330 LVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM-----LGEGWRTYAGDEN 381
Query: 232 LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR------ 285
+ +W + + + DD+R +K +G A G D+ + K
Sbjct: 382 MPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPT 441
Query: 286 -----KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDD 340
P I +I AHD TL+D+++ + K +
Sbjct: 442 NFEADSPGDVIQYIAAHDNLTLFDIIAQSIKK------------------------DPSK 477
Query: 341 ASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 384
A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 478 AENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 521
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 173/404 (42%), Gaps = 61/404 (15%)
Query: 2 NVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVFEF---DEMEFQRRR 57
+VR FT D + D + G++ I+K+ +L +LG+ ++LLPV + +E++ R
Sbjct: 159 HVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERL 218
Query: 58 N--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVY 115
+ + WGY N+FS Y++ P K EFK ++ +H G+ ILDVVY
Sbjct: 219 SDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVY 278
Query: 116 NHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 175
NHT + D F ++ Y+ +D G G G L H + L++DS+++
Sbjct: 279 NHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKY 330
Query: 176 WVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC----RG 231
V Y VDGFRFD+ + S A RA+ + I+ + E W
Sbjct: 331 LVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM-----LGEGWRTYAGDEN 382
Query: 232 LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR------ 285
+ +W + + + DD+R +K +G A G D+ + K
Sbjct: 383 MPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPT 442
Query: 286 -----KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDD 340
P I +I AHD TL+D+++ + K +
Sbjct: 443 NFEADSPGDVIQYIAAHDDLTLFDIIAQSIKK------------------------DPSK 478
Query: 341 ASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 384
A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 479 AENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 522
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 170/398 (42%), Gaps = 68/398 (17%)
Query: 3 VRAFTGDESSGLDPEIR---GSYLGLIQKIPHLLELGINAVELLPVFEF---DEMEFQRR 56
VR FT D+S LD +++ G++ +K+ +L +LG+ ++LLPV + +EM+ R
Sbjct: 275 VRDFTSDQS--LDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRS 332
Query: 57 R--NPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 114
D+ N WGY ++F+ Y+ P E K+++ +H G+ VILDVV
Sbjct: 333 TAYTSSDNNYN-WGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVV 391
Query: 115 YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLR 174
YNHT + T F I+ Y+ ++ G G G L H + +++DS++
Sbjct: 392 YNHTAK-------TYLFEDIEPNYYHFMNEDGSPRESFGGGR-LGTTHAMSRRVLVDSIK 443
Query: 175 HWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC----R 230
+ E+ VDGFRFD+ G A + AI +I E W +
Sbjct: 444 YLTSEFKVDGFRFDMM--------GDHDAAAIELAYKEAKAINPNMIMIGEGWRTFQGDQ 495
Query: 231 GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR----- 285
G + +W + + G + DD+R +K +G A G L + K
Sbjct: 496 GKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNIKAQP 555
Query: 286 ------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETD 339
P + +I AHD TL+D+++ S N + +
Sbjct: 556 GNFEADSPGDVVQYIAAHDNLTLHDVIAK--------------------SINKDPKVAEE 595
Query: 340 DASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTR 377
D R+++ ++ ++ SQGT + G EYG T+
Sbjct: 596 DI------HRRLRLGNVMILTSQGTAFIHSGQEYGRTK 627
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 41/262 (15%)
Query: 1 MNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAVELLPVFEF----- 48
+++R F+ + + +D + RG + ++ + L + G+ V LLP F F
Sbjct: 258 LHIRDFSAHDGT-VDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDD 316
Query: 49 --------DEMEFQRRRNPRDHMVNT-----------WGYSTINFFSPMSRYAAGGGGPL 89
DE E D WGY+ + + P YA+ GP
Sbjct: 317 IKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPS 376
Query: 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL 149
+ E+++MV+AL+ G+ V++DVVYNH + + ++ I Y D GQ+
Sbjct: 377 RI-IEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCG-ISSVLDKIVPGYYVRRDTNGQIE 434
Query: 150 NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIR 209
N A NT + H +V LI+D L +W V Y VDGFRFDL + + T + A ++
Sbjct: 435 NSAAMNNTAS-EHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRT---MMRAKSALQ 490
Query: 210 AIAKDA---ILSRCKIIAEPWD 228
++ DA S+ + E WD
Sbjct: 491 SLTTDAHGVDGSKIYLYGEGWD 512
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 94/237 (39%), Gaps = 66/237 (27%)
Query: 17 EIRGSYLGL-------IQKIPHLLELGINAVELLPVFEFD------------EMEFQR-- 55
E+RG YL L +Q + L G+ +ELLPVF+ + F R
Sbjct: 444 ELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLC 503
Query: 56 ---------------------------------RRNPRDHMVNT---------WGYSTIN 73
+ NP+ +NT WGY +
Sbjct: 504 EVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFH 563
Query: 74 FFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGAGIEVILDVVYNHTNEADDANPYTTSFR 132
+ P YA G + EF+ M++A+ G+ VI+DVVYNHTN A + T+
Sbjct: 564 YTVPEGSYATDPEGTARIK-EFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTD-RTSVLD 621
Query: 133 GIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 189
I Y ++ T + A C + H + +LI DSL W +Y +DGFRFDL
Sbjct: 622 KIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDL 678
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 94/237 (39%), Gaps = 66/237 (27%)
Query: 17 EIRGSYLGL-------IQKIPHLLELGINAVELLPVFEFD------------EMEFQR-- 55
E+RG YL L +Q + L G+ +ELLPVF+ + F R
Sbjct: 287 ELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLC 346
Query: 56 ---------------------------------RRNPRDHMVNT---------WGYSTIN 73
+ NP+ +NT WGY +
Sbjct: 347 EVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFH 406
Query: 74 FFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGAGIEVILDVVYNHTNEADDANPYTTSFR 132
+ P YA G + EF+ M++A+ G+ VI+DVVYNHTN A + T+
Sbjct: 407 YTVPEGSYATDPEGTARIK-EFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTD-RTSVLD 464
Query: 133 GIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 189
I Y ++ T + A C + H + +LI DSL W +Y +DGFRFDL
Sbjct: 465 KIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDL 521
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 94/237 (39%), Gaps = 66/237 (27%)
Query: 17 EIRGSYLGL-------IQKIPHLLELGINAVELLPVFEFD------------EMEFQR-- 55
E+RG YL L +Q + L G+ +ELLPVF+ + F R
Sbjct: 281 ELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLC 340
Query: 56 ---------------------------------RRNPRDHMVNT---------WGYSTIN 73
+ NP+ +NT WGY +
Sbjct: 341 EVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFH 400
Query: 74 FFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGAGIEVILDVVYNHTNEADDANPYTTSFR 132
+ P YA G + EF+ M++A+ G+ VI+DVVYNHTN A + T+
Sbjct: 401 YTVPEGSYATDPEGTARIK-EFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTD-RTSVLD 458
Query: 133 GIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 189
I Y ++ T + A C + H + +LI DSL W +Y +DGFRFDL
Sbjct: 459 KIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDL 515
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 94/237 (39%), Gaps = 66/237 (27%)
Query: 17 EIRGSYLGL-------IQKIPHLLELGINAVELLPVFEFD------------EMEFQR-- 55
E+RG YL L +Q + L G+ +ELLPVF+ + F R
Sbjct: 283 ELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLC 342
Query: 56 ---------------------------------RRNPRDHMVNT---------WGYSTIN 73
+ NP+ +NT WGY +
Sbjct: 343 EVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFH 402
Query: 74 FFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGAGIEVILDVVYNHTNEADDANPYTTSFR 132
+ P YA G + EF+ M++A+ G+ VI+DVVYNHTN A + T+
Sbjct: 403 YTVPEGSYATDPEGTARIK-EFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTD-RTSVLD 460
Query: 133 GIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 189
I Y ++ T + A C + H + +LI DSL W +Y +DGFRFDL
Sbjct: 461 KIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDL 517
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 34/170 (20%)
Query: 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78
G++ I K+P+L ELG+ +E++PV +F WGY + ++P
Sbjct: 150 EGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGE-------------RGWGYDGVLLYAPH 196
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 138
S Y G P +FK + A HG G+ V+LD+V NH F N +
Sbjct: 197 SAY----GTPD----DFKAFIDAAHGYGLSVVLDIVLNH-------------FGPEGNYL 235
Query: 139 YYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ GN + + V I+++ +W+ EYH+DG RFD
Sbjct: 236 PLLAPAFFHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFD 285
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Query: 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78
G++ G+I+K+ +L +LGI A+E++P+ +F RD WGY + ++
Sbjct: 115 EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP--------GKRD-----WGYDGVYLYAVQ 161
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 138
+ Y GGP F+++V H G+ VILDVVYNH + Y ++
Sbjct: 162 NSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGN---YMVKLGPYFSQK 210
Query: 139 YYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTD 198
Y G N + V + IL+++ +W+ EY+VDGFR D + D
Sbjct: 211 YKTPWGL--------TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII---D 259
Query: 199 GSP 201
SP
Sbjct: 260 TSP 262
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 43/187 (22%)
Query: 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78
G++ G+I+K+ +L +LGI A+E++P+ +F RD WGY + ++
Sbjct: 115 EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP--------GKRD-----WGYDGVYLYAVQ 161
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT----NEADDANPYTTSFRGI 134
+ Y GGP F+++V H G+ VILDVVYNH N PY +
Sbjct: 162 NSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKT 213
Query: 135 DNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC 194
+ + D + V + IL+++ +W+ EY+VDGFR D +
Sbjct: 214 PWGLTFNFD---------------DAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
Query: 195 RGTDGSP 201
D SP
Sbjct: 259 ---DTSP 262
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 43/187 (22%)
Query: 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78
G++ G+I+K+ +L +LGI A+E++P+ +F RD WGY + ++
Sbjct: 115 EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP--------GKRD-----WGYDGVYLYAVQ 161
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT----NEADDANPYTTSFRGI 134
+ Y GGP F+++V H G+ VILDVVYNH N PY +
Sbjct: 162 NSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKT 213
Query: 135 DNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC 194
+ + D + V + IL+++ +W+ EY+VDGFR D +
Sbjct: 214 PWGLTFNFD---------------DAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
Query: 195 RGTDGSP 201
D SP
Sbjct: 259 ---DTSP 262
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 43/187 (22%)
Query: 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78
G++ G+I+K+ +L +LGI A+E++P+ +F RD WGY + ++
Sbjct: 115 EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP--------GKRD-----WGYDGVYLYAVQ 161
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT----NEADDANPYTTSFRGI 134
+ Y GGP F+++V H G+ VILDVVYNH N PY +
Sbjct: 162 NSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKT 213
Query: 135 DNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC 194
+ + D + V + IL+++ +W+ EY+VDGFR + +
Sbjct: 214 PWGLTFNFD---------------DAESDEVRKFILENVEYWIKEYNVDGFRLEAVHAII 258
Query: 195 RGTDGSP 201
D SP
Sbjct: 259 ---DTSP 262
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 43/187 (22%)
Query: 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78
G++ G+I+K+ +L +LGI A+E++P+ +F RD WGY + ++
Sbjct: 115 EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP--------GKRD-----WGYDGVYLYAVQ 161
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT----NEADDANPYTTSFRGI 134
+ Y GGP F+++V H G+ VILDVVYNH N PY +
Sbjct: 162 NSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKT 213
Query: 135 DNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC 194
+ + D + V + IL+++ +W+ EY+VDGFR +
Sbjct: 214 PWGLTFNFD---------------DAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAII 258
Query: 195 RGTDGSP 201
D SP
Sbjct: 259 ---DTSP 262
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 34/175 (19%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G+Y +K+P+L ELG+ A++++P+ FD QR WGY F++P +
Sbjct: 141 GTYRAAAEKLPYLKELGVTAIQVMPLAAFDG---QR----------GWGYDGAAFYAPYA 187
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
Y G P + +V A H G+ V LDVVYNH + + Y +S+
Sbjct: 188 PY----GRPE----DLMALVDAAHRLGLGVFLDVVYNHFGPSGN---YLSSY-----APS 231
Query: 140 YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC 194
Y D + + G G L+ P + + + R W+ +YH DG R D +
Sbjct: 232 YFTD---RFSSAWGMG--LDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMT 281
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G+Y +K+P+L ELG+ A+++ P+ FD WGY F++P +
Sbjct: 141 GTYRAAAEKLPYLKELGVTAIQVXPLAAFDGQ-------------RGWGYDGAAFYAPYA 187
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
Y G P + +V A H G+ V LDVVYNH + + Y +S+
Sbjct: 188 PY----GRPE----DLXALVDAAHRLGLGVFLDVVYNHFGPSGN---YLSSY-----APS 231
Query: 140 YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
Y D + G L+ P + + R W+ +YH DG R D
Sbjct: 232 YFTD-----RFSSAWGXGLDYAEPHXRRYVTGNARXWLRDYHFDGLRLD 275
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 38/185 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I + HL +LG+NAV P+F+ Y T ++F
Sbjct: 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFK---------------ATTNHKYDTEDYFQIDP 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
++ K++V H GI V+LD V+NH+ P+ + + Y
Sbjct: 214 QFGDKD--------TLKKLVDLCHERGIRVLLDAVFNHSGRT--FPPFVDVLKNGEKSKY 263
Query: 140 Y-----------MVDG--TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 186
+VDG T + LN HP V E +L + +W+ E +DG+R
Sbjct: 264 KDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWR 323
Query: 187 FDLAS 191
D+A+
Sbjct: 324 LDVAN 328
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 51/211 (24%)
Query: 3 VRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDH 62
VR+F G+ G + GL + +L ELGI+ V L+PVF
Sbjct: 8 VRSFRDGNLDGV-----GDFRGLKNAVSYLKELGIDFVWLMPVFS--------------- 47
Query: 63 MVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT---- 118
++ GY ++F+S + Y + EFKEM++A H +GI+V+LD+ +HT
Sbjct: 48 SISFHGYDVVDFYSFKAEYGS--------EREFKEMIEAFHDSGIKVVLDLPIHHTGFLH 99
Query: 119 ---NEADDANPYTTSFRGIDNKV---------------YYMVDGTGQLLNYAGCGNTLNC 160
+A +P+ + NK + + DG + LN
Sbjct: 100 TWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNY 159
Query: 161 NHPVVMELILDSLRHWVVEYHVDGFRFDLAS 191
++P V + + + H +++ VDGFRFD A
Sbjct: 160 DNPQVFDEMKRLVLH-LLDMGVDGFRFDAAK 189
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I + +L +LGI + L P+F R P +H +T Y I+
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIF----------RAPSNHKYDTADYFEID------ 216
Query: 80 RYAAGGGGPLKASWE-FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYT 128
P E K +VK H GI V+LD V+NH + A+ Y
Sbjct: 217 --------PHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYK 268
Query: 129 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
F + + + LN HP V +LD +W+ E+ +DG+R D
Sbjct: 269 DWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
Query: 189 LAS 191
+A+
Sbjct: 329 VAN 331
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I + +L +LGI + L P+F R P +H +T Y I+
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIF----------RAPSNHKYDTADYFEID------ 216
Query: 80 RYAAGGGGPLKASWE-FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYT 128
P E K +VK H GI V+LD V+NH + A+ Y
Sbjct: 217 --------PHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYK 268
Query: 129 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
F + + + LN HP V +LD +W+ E+ +DG+R D
Sbjct: 269 DWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
Query: 189 LAS 191
+A+
Sbjct: 329 VAN 331
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 45/186 (24%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G+ G+ +K+P+LL+LG+ A+ L PV F N R H V+ + I
Sbjct: 47 GTLWGVAEKLPYLLDLGVEAIYLNPV-------FASTANHRYHTVDYFQVDPI------- 92
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 129
L + + +++ H G+ VILD V+NHT E + +PY
Sbjct: 93 ---------LGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLXENGEQSPYRD 143
Query: 130 SF--RGIDNKVYYMVDGTGQLLNYAGCGN----TLNCNHPVVMELILDSLRHWVVEYHVD 183
+ +G K Y T A GN L P V E +L HW + + VD
Sbjct: 144 WYHVKGFPLKAY-----TAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHW-IRFGVD 197
Query: 184 GFRFDL 189
G+R D+
Sbjct: 198 GWRLDV 203
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 58/217 (26%)
Query: 3 VRAFTGDESSGLDPEIRGSYLGLIQKIPHL--------LELGINAVELLPVFEFDEMEFQ 54
VR+F + G+ G G+I+K+ +L +LG+N + L+P+F
Sbjct: 12 VRSFYDSDGDGI-----GDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIF-------- 58
Query: 55 RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 114
++P H GY +++ Y G L+ +F ++V+A H GI+VI+D+
Sbjct: 59 --KSPSYH-----GYDVTDYYKINPDY-----GTLE---DFHKLVEAAHQRGIKVIIDLP 103
Query: 115 YNHTNEADDANPYTTSFRGIDNKVYYMVDGT-----------GQLLNYAGCG-------- 155
NHT+E + + + + YY+ G G++ +Y+ G
Sbjct: 104 INHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWS 163
Query: 156 --NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA 190
LN N+P V E ++ ++W+ + VDGFR D A
Sbjct: 164 GMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGA 199
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 31/176 (17%)
Query: 21 SYLGLIQKIP-HLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
SY L +++ ++++ G VELLPV E +WGY ++++P S
Sbjct: 261 SYRQLARELTDYIVDQGFTHVELLPVAEHP-------------FAGSWGYQVTSYYAPTS 307
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
R+ G P +F+ +V ALH AGI VI+D V H + A F G +Y
Sbjct: 308 RF----GTPD----DFRALVDALHQAGIGVIVDWVPAHFPKDAWA---LGRFDG--TPLY 354
Query: 140 YMVDGT-GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD-LASVL 193
D G+ L++ + P V ++ + +W+ E+H+DG R D +AS+L
Sbjct: 355 EHSDPKRGEQLDWGTY--VFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASML 408
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 41/186 (22%)
Query: 12 SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 71
SG +PE+ +P + N V+L+ + E ++GY
Sbjct: 191 SGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHS-------------YYASFGYHV 237
Query: 72 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH-TNEADDA------ 124
NFF+ SR G P + K +V H G+ V++DVV++H +N D
Sbjct: 238 TNFFAVSSR----SGTPE----DLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDV 289
Query: 125 --NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHV 182
N + + F D + + D +L NYA V+ +L +LR+W+ E+
Sbjct: 290 GQNTHESYFHTGDRGYHKLWDS--RLFNYANWE---------VLRFLLSNLRYWMDEFMF 338
Query: 183 DGFRFD 188
DGFRFD
Sbjct: 339 DGFRFD 344
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 41/186 (22%)
Query: 12 SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 71
SG +PE+ +P + N V+L+ + E ++GY
Sbjct: 191 SGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHS-------------YYASFGYHV 237
Query: 72 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH-TNEADDA------ 124
NFF+ SR G P + K +V H G+ V++DVV++H +N D
Sbjct: 238 TNFFAVSSR----SGTPE----DLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDV 289
Query: 125 --NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHV 182
N + + F D + + D +L NYA V+ +L +LR+W+ E+
Sbjct: 290 GQNTHESYFHTGDRGYHKLWDS--RLFNYANWE---------VLRFLLSNLRYWMDEFMF 338
Query: 183 DGFRFD 188
DGFRFD
Sbjct: 339 DGFRFD 344
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I + +L++LGI + L P+F R+P +H Y T ++F
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIF----------RSPSNH-----KYDTADYFEVDP 217
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 129
+ G LK ++ H GI V+LD V+NH + +++ Y
Sbjct: 218 HF--GDKETLKT------LIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKD 269
Query: 130 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 189
F + + + LN +P V +LD +W+ E+ +DG+R D+
Sbjct: 270 WFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDV 329
Query: 190 AS 191
A+
Sbjct: 330 AN 331
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I + +L++LGI + L P+F R+P +H Y T ++F
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIF----------RSPSNH-----KYDTADYFEVDP 217
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 129
+ G LK ++ H GI V+LD V+NH + +++ Y
Sbjct: 218 HF--GDKETLKT------LIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKD 269
Query: 130 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 189
F + + + LN +P V +LD +W+ E+ +DG+R D+
Sbjct: 270 WFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDV 329
Query: 190 AS 191
A+
Sbjct: 330 AN 331
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETAAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R D+A+
Sbjct: 323 RLDVAN 328
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R D+A+
Sbjct: 323 RLDVAN 328
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R D+A+
Sbjct: 323 RLDVAN 328
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R D+A+
Sbjct: 323 RLDVAN 328
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R D+A+
Sbjct: 323 RLDVAN 328
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R D+A+
Sbjct: 323 RLDVAN 328
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETYAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R D+A+
Sbjct: 323 RLDVAN 328
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 37/183 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+++ + ++ LGINA+ P+F+ + +H +T Y ++ PM
Sbjct: 53 GDLWGIMEDLDYIQNLGINAIYFTPIFQ----------SASNHRYHTHDYYQVD---PM- 98
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN-------EADDANPYTTSFR 132
L + FKE++ A H I+V+LD V+NH++ + + P++
Sbjct: 99 ---------LGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVN 149
Query: 133 GIDNKVYYMVDGTGQL-LNYAG-CGN----TLNCNHPVVMELILDSLRHWVVEYHVDGFR 186
+ + + G+ NY G GN N ++P V E I++ +W +++ +DG+R
Sbjct: 150 WFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYW-LKFGIDGWR 208
Query: 187 FDL 189
D+
Sbjct: 209 LDV 211
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 98/253 (38%), Gaps = 72/253 (28%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G +G+ +KI HL+ LGINA+ L P+F + GY +++F
Sbjct: 236 GDLIGIKEKIDHLVNLGINAIYLTPIFS---------------SLTYHGYDIVDYFHVAR 280
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPY---------TTS 130
R L F +++ L I+VILD V++HT+ +PY +S
Sbjct: 281 R--------LGGDRAFVDLLSELKRFDIKVILDGVFHHTS---FFHPYFQDVVRKGENSS 329
Query: 131 FRGIDNKVYYMVDGTG--QLL------------------NYAGCGNT-----LNCNHPVV 165
F+ + + V Q+L NY + LN ++P V
Sbjct: 330 FKNFYRIIKFPVVSKEFLQILHSKSSWEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKV 389
Query: 166 MELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAE 225
E I + + W + VDGFR D+A PP + ++A+ +I E
Sbjct: 390 REFIKNVILFWTNK-GVDGFRMDVAH-----------GVPPEVWKEVREALPKEKYLIGE 437
Query: 226 PWDCRGLYLVGKF 238
D L+L KF
Sbjct: 438 VMDDARLWLFDKF 450
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R ++A+
Sbjct: 323 RLNVAN 328
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 41/186 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++P+L ELG+ A+ P+F +P H +T Y I+
Sbjct: 170 GDLKGVIDRLPYLEELGVTALYFTPIFA----------SPSHHKYDTADYLAID------ 213
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 139
G P F+ +V H GI++ILD V+NH D + + + Y
Sbjct: 214 --PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRY 264
Query: 140 --------YMVDGTGQLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGF 185
+ V T + NY L +P V E + D R W +E +DG+
Sbjct: 265 KDWFFIEDFPVSKTSR-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGW 322
Query: 186 RFDLAS 191
R ++A+
Sbjct: 323 RLNVAN 328
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 25/113 (22%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I+K+ +L+ELG++ V + P++ R+P GY ++++ M
Sbjct: 28 GDLRGIIEKLDYLVELGVDIVWICPIY----------RSPNADN----GYDISDYYAIMD 73
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFR 132
+ +F E++ H G++VILD+V NHT+ D +P+ R
Sbjct: 74 EFGTMD--------DFDELLAQAHRRGLKVILDLVINHTS---DEHPWFIESR 115
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G++ G+ + + +LG + + LLP+ E VN G SP +
Sbjct: 27 GNFAGVTADLQRIKDLGTDILWLLPINPIGE-------------VNRKG----TLGSPYA 69
Query: 80 RYAAGGGGPLKASW-EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 138
G P + +FK + H G++V+LD+VYNHT+ S ++
Sbjct: 70 IKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSP--------DSVLATEHPE 121
Query: 139 YYMVDGTGQLLNYAGCGN---TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 193
++ D GQL N G + L+ H + + +D+L +W VDG+R D+A ++
Sbjct: 122 WFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYW--SQFVDGYRCDVAPLV 177
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 42/177 (23%)
Query: 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGG 86
Q +P+ +G +ELLP+ E +P D +WGY ++P R+
Sbjct: 160 QLVPYAKWMGFTHLELLPINE----------HPFD---GSWGYQPTGLYAPTRRFGTRD- 205
Query: 87 GPLKASWEFKEMVKALHGAGIEVILDVVYNH-------TNEADDANPYTTSFRGIDNKVY 139
+F+ + A H AG+ VILD V H E D N Y S D +
Sbjct: 206 -------DFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHS----DPREG 254
Query: 140 YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD-LASVLCR 195
Y D + NY V ++ + +W+ + +D R D +AS++ R
Sbjct: 255 YHQDWNTLIYNYG---------RREVSNFLVGNALYWIERFGIDALRVDAVASMIYR 302
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 59/226 (26%)
Query: 4 RAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHM 63
R+F G+ G G+I K+ +L ELGI+ + L PV+E +P D
Sbjct: 17 RSFMDSNGDGI-----GDLRGIISKLDYLKELGIDVIWLSPVYE----------SPNDDN 61
Query: 64 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADD 123
GY ++ M+ + W+ E++ +H +++++D+V NHT +D+
Sbjct: 62 ----GYDISDYCKIMNEFGT------MEDWD--ELLHEMHERNMKLMMDLVVNHT--SDE 107
Query: 124 ANPYTTSFRGIDNKV--YYM--------------VDGTGQLLNYAGCGNT---------- 157
N + S + DNK YY+ +G Y +
Sbjct: 108 HNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQ 167
Query: 158 --LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 201
LN ++ V + + + ++ W +E +DGFR D+ + + + +G P
Sbjct: 168 PDLNWDNEKVRQDVYEMMKFW-LEKGIDGFRMDVINFISK-EEGLP 211
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 119
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 119
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 119
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 119
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 114 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 161
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 119
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 162 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 193
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 119
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 150
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 151 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 196
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 197 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 242
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGQLWKGPSEYPNWD 231
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 119
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 119
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 150
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 151 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 196
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 197 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 242
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 150
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 151 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 196
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 197 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 242
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 150
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 151 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 196
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 197 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 242
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGGLWKGPSEYPNWD 231
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 150
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 151 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 196
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 197 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 242
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G++ ++ +P + LG +A+ LLPV ++ F++ P YS N
Sbjct: 117 GTFFKMMLLLPFVKSLGADAIYLLPVSRMSDL-FKKGDAPS-------PYSVKNPMELDE 168
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 114
RY P K EFK V+A H GI VILD +
Sbjct: 169 RYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFI 203
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 54/218 (24%)
Query: 4 RAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHM 63
R+F G+ G G+I+K+ +L LGI+A+ + P ++ +
Sbjct: 31 RSFKDTNDDGI-----GDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDN---------- 75
Query: 64 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE--- 120
GY N+ M Y G ++ +F +V + + +++DVV NHT++
Sbjct: 76 ----GYDISNYRQIMKEY-----GTME---DFDSLVAEMKKRNMRLMIDVVINHTSDQHP 123
Query: 121 ------ADDANPYTTSF---RGIDNK------------VYYMVDGTGQ--LLNYAGCGNT 157
+D NPY + G DN+ + +GQ L +A
Sbjct: 124 WFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPD 183
Query: 158 LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 195
LN ++P V E + LR W ++ V G RFD + +
Sbjct: 184 LNWDNPKVREDLYAMLRFW-LDKGVSGMRFDTVATYSK 220
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 60/207 (28%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+++ I HL +LG+ + L P+F + H +T Y +I+ +
Sbjct: 262 GDLAGIMKHIDHLEDLGVETIYLTPIFS----------STSYHRYDTIDYKSIDKY---- 307
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDA----------NPYTT 129
L +F+++V+ LH I+++LD+ +HTN ++ +PY
Sbjct: 308 ---------LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWE 358
Query: 130 SFRGIDNKVYYMVDGTGQLLNYAGCGN--------------------------TLNCNHP 163
F + +V+ + ++ C + N ++P
Sbjct: 359 MFSFLSPPPKEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNP 418
Query: 164 VVMELILDSLRHWVVEYHVDGFRFDLA 190
++ +D + W ++ +DGFR D+A
Sbjct: 419 RTVDYFIDITKFW-IDKGIDGFRIDVA 444
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 38/192 (19%)
Query: 20 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 75
G + G+I KI +L ++G+ A+ + E F M N + GY +F
Sbjct: 49 GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVM------NDASGSASYHGYWARDFK 102
Query: 76 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 134
P + G L +F+ +V A H GI+VI+D NHT+ A + NP Y + R
Sbjct: 103 KPNPFF-----GTLS---DFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLY 154
Query: 135 DN-----------KVYYMVDGTGQLLN-----YAGCGNTLNCNH--PVVMELILDSLRHW 176
DN +Y+ +G + Y + + NH PV+ + D+++ W
Sbjct: 155 DNGTLLGGYTNDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMW 214
Query: 177 VVEYHVDGFRFD 188
++ +DG R D
Sbjct: 215 -IDMGIDGIRMD 225
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 150
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 151 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 196
+ G LN HP V + D + +Y GFRF+
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFN-------- 193
Query: 197 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 242
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 59/168 (35%), Gaps = 49/168 (29%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 150
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 151 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 196
+ G LN HP V + D + +Y GFRF
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFG-------- 193
Query: 197 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 242
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80
S+ L + + + G A++ P+ + E N D ++ W + + P S
Sbjct: 15 SFNTLKHNMKDIHDAGYTAIQTSPINQVKE------GNQGDKSMSNWYW----LYQPTSY 64
Query: 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 140
G L EFKEM A GI+VI+D V NHT T + I N+V
Sbjct: 65 QI--GNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHT---------TFDYAAISNEVKS 113
Query: 141 M---VDGTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 187
+ G Q+ N++ N+L N + V + L + DGFRF
Sbjct: 114 IPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRF 172
Query: 188 DLASVLCRGTDGS 200
D A + DGS
Sbjct: 173 DAAKHIELPDDGS 185
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80
S+ L + + + G A++ P+ + E N D ++ W + + P S
Sbjct: 18 SFNTLKHNMKDIHDAGYTAIQTSPINQVKE------GNQGDKSMSNWYW----LYQPTSY 67
Query: 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 140
G L EFKEM A GI+VI+D V NHT T + I N+V
Sbjct: 68 QI--GNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHT---------TFDYAAISNEVKS 116
Query: 141 M---VDGTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 187
+ G Q+ N++ N+L N + V + L + DGFRF
Sbjct: 117 IPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRF 175
Query: 188 DLASVLCRGTDGS 200
D A + DGS
Sbjct: 176 DAAKHIELPDDGS 188
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 52/221 (23%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT-WGYSTINFFSPM 78
G + GL +K+ +L LGI+A+ + NP NT GY ++ M
Sbjct: 29 GDFKGLTEKLDYLKGLGIDAIWI---------------NPHYASPNTDNGYDISDYREVM 73
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTT 129
Y G ++ +F ++ L G+ +++DVV NH+++ A NPY
Sbjct: 74 KEY-----GTME---DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRD 125
Query: 130 SFRGIDNK---------------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDS 172
+ D K + TGQ L+Y G LN + P + E +
Sbjct: 126 YYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYLGRQQPDLNWDTPKLREELYAM 185
Query: 173 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 213
LR W ++ V G RFD + + T G P P ++ A+
Sbjct: 186 LRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPEQMKNFAE 224
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 52/221 (23%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT-WGYSTINFFSPM 78
G + GL +K+ +L LGI+A+ + NP NT GY ++ M
Sbjct: 28 GDFKGLTEKLDYLKGLGIDAIWI---------------NPHYASPNTDNGYDISDYREVM 72
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTT 129
Y G ++ +F ++ L G+ +++DVV NH+++ A NPY
Sbjct: 73 KEY-----GTME---DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRD 124
Query: 130 SFRGIDNK---------------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDS 172
+ D K + TGQ L+Y G LN + P + E +
Sbjct: 125 YYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAM 184
Query: 173 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 213
LR W ++ V G RFD + + T G P P ++ A+
Sbjct: 185 LRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPEQMKNFAE 223
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 52/221 (23%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT-WGYSTINFFSPM 78
G + GL +K+ +L LGI+A+ + NP NT GY ++ M
Sbjct: 28 GDFKGLTEKLDYLKGLGIDAIWI---------------NPHYASPNTDNGYDISDYREVM 72
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTT 129
Y G ++ +F ++ L G+ +++DVV NH+++ A NPY
Sbjct: 73 KEY-----GTME---DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRD 124
Query: 130 SFRGIDNK---------------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDS 172
+ D K + TGQ L+Y G LN + P + E +
Sbjct: 125 YYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAM 184
Query: 173 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 213
LR W ++ V G RFD + + T G P P ++ A+
Sbjct: 185 LRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPEQMKNFAE 223
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 52/221 (23%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT-WGYSTINFFSPM 78
G + GL +K+ +L LGI+A+ + NP NT GY ++ M
Sbjct: 29 GDFKGLTEKLDYLKGLGIDAIWI---------------NPHYASPNTDNGYDISDYREVM 73
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTT 129
Y G ++ +F ++ L G+ +++DVV NH+++ A NPY
Sbjct: 74 KEY-----GTME---DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRD 125
Query: 130 SFRGIDNK---------------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDS 172
+ D K + TGQ L+Y G LN + P + E +
Sbjct: 126 YYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAM 185
Query: 173 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 213
LR W ++ V G RFD + + T G P P ++ A+
Sbjct: 186 LRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPEQMKNFAE 224
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 52/221 (23%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT-WGYSTINFFSPM 78
G + GL +K+ +L LGI+A+ + NP NT GY ++ M
Sbjct: 29 GDFKGLTEKLDYLKGLGIDAIWI---------------NPHYASPNTDNGYDISDYREVM 73
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTT 129
Y G ++ +F ++ L G+ +++DVV NH+++ A NPY
Sbjct: 74 KEY-----GTME---DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRD 125
Query: 130 SFRGIDNK---------------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDS 172
+ D K + TGQ L+Y G LN + P + E +
Sbjct: 126 YYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAM 185
Query: 173 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 213
LR W ++ V G RFD + + T G P P ++ A+
Sbjct: 186 LRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPEQMKNFAE 224
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 52/221 (23%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT-WGYSTINFFSPM 78
G + GL +K+ +L LGI+A+ + NP NT GY ++ M
Sbjct: 56 GDFKGLTEKLDYLKGLGIDAIWI---------------NPHYASPNTDNGYDISDYREVM 100
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTT 129
Y G ++ +F ++ L G+ +++DVV NH+++ A NPY
Sbjct: 101 KEY-----GTME---DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRD 152
Query: 130 SFRGIDNK---------------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDS 172
+ D K + TGQ L+Y G LN + P + E +
Sbjct: 153 YYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAM 212
Query: 173 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 213
LR W ++ V G RFD + + T G P P ++ A+
Sbjct: 213 LRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPEQMKNFAE 251
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 35/192 (18%)
Query: 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80
S+ L + + + G A++ P+ + E N D + W + + P S
Sbjct: 15 SFNTLKNNMKDIHDAGYTAIQTSPINQVKE------GNKGDKSMGNWYW----LYQPTSY 64
Query: 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 140
G L + EFKEM A G++VI+D V NHT T+ + I N++
Sbjct: 65 QI--GNRYLGSEEEFKEMCAAAEEYGVKVIVDAVINHT---------TSDYAAISNEIKS 113
Query: 141 MVD---GTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 187
+ + G Q+ N++ N+L N + V + L + DGFR+
Sbjct: 114 ISNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRY 172
Query: 188 DLASVLCRGTDG 199
D A + DG
Sbjct: 173 DAAKHIELPDDG 184
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTSFRG---------------IDNK 137
+ K ++ ALHG G++ I D+V NH T E D F G D++
Sbjct: 69 QLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDR 128
Query: 138 VYYMVDGTGQLLNYAGCGNTLNCNH--PVVMELILDSLRHWVVEYHVDGFRFDLAS 191
Y DGTG A G + +H V + +++ L + DG+RFD A
Sbjct: 129 PY--ADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDFAK 182
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 89/230 (38%), Gaps = 54/230 (23%)
Query: 4 RAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHM 63
R+F G+ G G+I+K+ +L LGI+A+ + P ++ +
Sbjct: 17 RSFKDTNGDGI-----GDINGIIEKLDYLKALGIDAIWINPHYDSPNTDN---------- 61
Query: 64 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADD 123
GY ++ M Y G ++ +F ++ + + +++DVV NHT++ ++
Sbjct: 62 ----GYDIRDYRKIMKEY-----GTME---DFDRLISEMKKRNMRLMIDVVINHTSDQNE 109
Query: 124 ---------ANPYTTSFRGIDNK---------------VYYMVDGTGQ--LLNYAGCGNT 157
NPY + D K + + T Q L +A
Sbjct: 110 WFVKSKSSKDNPYRGYYFWKDAKEGQAPNNYPSFFGGSAWQKDEKTNQYYLHYFAKQQPD 169
Query: 158 LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPL 207
LN ++P V + + LR W ++ V G RFD + + D L L
Sbjct: 170 LNWDNPKVRQDLYAMLRFW-LDKGVSGLRFDTVATYSKIPDFPNLTQQQL 218
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 52/221 (23%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT-WGYSTINFFSPM 78
G + GL +K+ +L LGI+A+ + NP NT GY ++ M
Sbjct: 28 GDFKGLTEKLDYLKGLGIDAIWI---------------NPHYASPNTDNGYDISDYREVM 72
Query: 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTT 129
Y G ++ +F ++ L G+ +++DVV NH+++ A NPY
Sbjct: 73 KEY-----GTME---DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRD 124
Query: 130 SFRGIDNK---------------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDS 172
+ D K + TGQ L+Y G LN + P + E +
Sbjct: 125 YYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAM 184
Query: 173 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 213
LR W ++ V G RF + + T G P P ++ A+
Sbjct: 185 LRFW-LDKGVSGMRFATVATYSK-TPGFPDLTPEQMKNFAE 223
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV------YYMVDGTG- 146
+FK+ VK H + V++D+V NH +DN + +++ D G
Sbjct: 80 DFKKFVKRAHELNMYVLMDMVLNHA--------------AVDNVLVKKHPEWFLRDENGN 125
Query: 147 ---QLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 193
++ +++ + + ++ + E +++ +R+WV E+ VDGFR D+A ++
Sbjct: 126 PTRKVPDWSDVVD-FDYSNGELREYMINMMRYWVEEFDVDGFRCDVAGLV 174
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW--GYSTINFFSPMSRYAAG 84
KIP E GI+A+ L P P M + GY ++F Y G
Sbjct: 32 SKIPEWYEAGISAIWLPP--------------PSKGMSGGYSMGYDPYDYFDLGEYYQKG 77
Query: 85 G-GGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGID 135
+ E +++ H GI+VI DVV NH D + NP+ + D
Sbjct: 78 TVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTD 130
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGG 86
QKIP + GI+A+ + P + + +P D F + Y G
Sbjct: 32 QKIPEWYDAGISAIWIPPASKGMGGAYSMGYDPYD-------------FFDLGEYDQKGT 78
Query: 87 GPLK--ASWEFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGID 135
+ + E M+ H G++VI D+V NH D + NP+ + D
Sbjct: 79 VETRFGSKQELVNMINTAHAYGMKVIADIVINHRAGGDLEWNPFVNDYTWTD 130
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 93/239 (38%), Gaps = 51/239 (21%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTSFRG--IDNKVYY---MV----- 142
E K ++ ALHG G++ I D+V NH + D+ F G D ++ + M+
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIACIFEGGTSDGRLDWGPHMICRDDT 129
Query: 143 ---DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV----EYHVDGFRFDLASVLCR 195
DGT L A + +H + + + L+ W++ + D +R D A R
Sbjct: 130 KYSDGTANLDTGADFAAAPDIDH--LNDRVQRELKEWLLWLKSDLGFDAWRLDFA----R 183
Query: 196 GTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAE------WNG 249
G SP A I S +AE WD GK PN+D+ A W
Sbjct: 184 GY--SPEMAKVYIDGT------SPSLAVAEVWDNMATGGDGK-PNYDQDAHRQNLVNWVD 234
Query: 250 KYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRK----------PYHSINFIIAHD 298
K + D KGIL + G +L+R+ + P ++ F+ HD
Sbjct: 235 KVGGAASAGMVFDFTTKGILNAAVEG--ELWRLIDPQGKAPGVMGWWPAKAVTFVDNHD 291
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAA 83
G+ QK+ +L +LG+ A+ L P+ H + Y+ +N P
Sbjct: 61 GVTQKLDYLNQLGVKALWLSPIHPCXSY----------HGYDVTDYTKVN---PQ----- 102
Query: 84 GGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 121
L +F +V H GI++ LD V NHT A
Sbjct: 103 -----LGTESDFDRLVTEAHNRGIKIYLDYVXNHTGTA 135
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFE-FDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78
G G+ QK+P+L +LG+ + L PV + D + N H GY T +F
Sbjct: 49 GDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLA--GTDNTGYH-----GYWTRDFKQIE 101
Query: 79 SRYAAGGGGPLKASW-EFKEMVKALHGAGIEVILDVVYNHT 118
+ +W F +V H GI+VI+D V NH+
Sbjct: 102 EHF---------GNWTTFDTLVNDAHQNGIKVIVDFVPNHS 133
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH 117
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 149
+F+ ++ H I+VI+D NHT+ A + +P Y + R DN Y D G
Sbjct: 118 DFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFH 177
Query: 150 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+Y G + LN + + + +++ W ++ +DG R D
Sbjct: 178 HYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLD 230
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH 117
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH 117
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH 117
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH 117
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 23/98 (23%)
Query: 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAA 83
G+ QK+ +L +LG+ A+ L P+ M + H + Y+ +N P
Sbjct: 61 GVTQKLDYLNQLGVKALWLSPIHPC--MSY--------HGYDVTDYTKVN---PQ----- 102
Query: 84 GGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 121
L +F +V H GI++ LD V NHT A
Sbjct: 103 -----LGTESDFDRLVTEAHNRGIKIYLDYVMNHTGTA 135
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 149
+F+ ++ H I+VI+D NHT+ A + +P Y + R DN Y D G
Sbjct: 118 DFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFH 177
Query: 150 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+Y G + LN + + + +++ W ++ +DG R D
Sbjct: 178 HYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLD 230
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 189
+ G + LN N+ V + D+++ W ++ +DG R D+
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMDV 230
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 53/197 (26%)
Query: 20 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 74
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 75 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD------------ 122
F M+ +F+ ++ H GI++++D NHT+ AD
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTL 157
Query: 123 ------DANPY-----TTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 171
D N Y + F ++N +Y L + A N N+ + + D
Sbjct: 158 VGGYTNDTNGYFHHNGGSDFSSLENGIY------KNLYDLAD----FNHNNATIDKYFKD 207
Query: 172 SLRHWVVEYHVDGFRFD 188
+++ W ++ VDG R D
Sbjct: 208 AIKLW-LDMGVDGIRVD 223
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLWDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSSYEDGIYRNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKGLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLFDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLLDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLGDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 53/217 (24%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+I ++ +L +LGI+A+ L PV++ ++ GY ++ +
Sbjct: 29 GDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDN--------------GYDISDYEAIDP 74
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV- 138
+Y + E++ I++++D+V NHT +D + + +G DN+
Sbjct: 75 QYGTMA--------DMDELISKAKEHHIKIVMDLVVNHT--SDQHKWFVEAKKGKDNQYR 124
Query: 139 -YYM----VD----------------------GTGQLLNYAGCGNTLNCNHPVVMELILD 171
YY+ VD G L +A LN + + + I +
Sbjct: 125 DYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQYYLHFFADQQPDLNWQNTELRQKIYN 184
Query: 172 SLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLI 208
+ W ++ + GFR D+ ++ + D + P++
Sbjct: 185 MMNFW-LDKGIGGFRMDVIELIGKDPDKNIRENGPML 220
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 28/182 (15%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
GS+ G+I + ++ +G A+ + P+ E Q ++ D GY + S
Sbjct: 40 GSWQGIIDHLDYIEGMGFTAIWISPITE------QLPQDTADGEAYH-GYWQQKIYDVNS 92
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS-FRGIDNKV 138
+ K + ALH G+ +++DVV +H A + N S F D+
Sbjct: 93 NFGTAD--------NLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSS 144
Query: 139 YY----MVDGTGQLLNYAGC--GNT------LNCNHPVVMELILDSLRHWVVEYHVDGFR 186
Y+ ++ L C G+T L+ V + D + V Y VDG R
Sbjct: 145 YFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLR 204
Query: 187 FD 188
D
Sbjct: 205 ID 206
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 137
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGADFN 137
Query: 138 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMAPG 205
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEAD-----DANPYTTSFRGIDNKVYYMVDGTGQL 148
++ + ++A H AG++V DVV++H AD DA S R + Y + +
Sbjct: 83 QYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTK- 141
Query: 149 LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 195
++ G GNT + W YH DG +D + L R
Sbjct: 142 FDFPGRGNTYSSFK-----------WRW---YHFDGVDWDESRKLSR 174
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT--WGYSTINFFSP 77
G++ G+I K+ ++ +G A+ + PV + P+D GY + +S
Sbjct: 40 GTWQGIIDKLDYIQGMGFTAIWITPV---------TAQLPQDCAYGDAYTGYWQTDIYSL 90
Query: 78 MSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 117
Y + K + ALH G+ +++DVV NH
Sbjct: 91 NENYGTAD--------DLKALSSALHERGMYLMVDVVANH 122
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 20 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 75
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 76 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 134
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 135 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 176
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDLSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 177 VVEYHVDGFRFD 188
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 20 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 75
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 76 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 134
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 135 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 176
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 177 VVEYHVDGFRFD 188
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 20 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 75
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 76 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 134
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 135 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 176
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 177 VVEYHVDGFRFD 188
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 20 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 75
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 76 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 134
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 135 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 176
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 177 VVEYHVDGFRFD 188
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 20 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 75
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 76 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 134
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 135 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 176
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 177 VVEYHVDGFRFD 188
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 149
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 150 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G+ G+ +++ +L LG+ + L+P+ E E N GY+ ++ +
Sbjct: 108 GTLKGVEERLDYLEGLGVKYLHLMPLLRPREGE------------NDGGYAVQDYRA--V 153
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT 118
R G L A + +AL G GI ++LD+V NH
Sbjct: 154 RPDLGTMDDLSA------LARALRGRGISLVLDLVLNHV 186
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 54/208 (25%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+ K+ ++ ELG +A+ + P ++ +P+D M GY N+
Sbjct: 37 GDMKGIASKLEYIKELGADAIWISPFYD----------SPQDDM----GYDIANYEKVWP 82
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT---------NEADDANPYTTS 130
Y + +++ H G++ I D+V NH + + NP
Sbjct: 83 TYGTNE--------DCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDW 134
Query: 131 F-----RGIDN----------KVYY-----MVDGTGQ---LLNYAGCGNTLNCNHPVVME 167
F +G D K Y+ D Q L + LN + +
Sbjct: 135 FFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLFCSTQPDLNWENEDCRK 194
Query: 168 LILDSLRHWVVEYHVDGFRFDLASVLCR 195
I +S + +++ VDGFR D+ S+ +
Sbjct: 195 AIYESAVGYWLDHGVDGFRIDVGSLYSK 222
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 48/128 (37%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP--------------------------- 126
+F+ ++ A H I+VI+D NHT+ A P
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 127 ------YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 180
++T+ GI +Y + D LN N+ V + D+++ W ++
Sbjct: 177 HNLGTDFSTTENGIYKNLYDLAD--------------LNHNNSTVDVYLKDAIKMW-LDL 221
Query: 181 HVDGFRFD 188
+DG R D
Sbjct: 222 GIDGIRMD 229
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 54/208 (25%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G G+ K+ ++ ELG +A+ + P ++ +P+D M GY N+
Sbjct: 37 GDMKGIASKLEYIKELGADAIWISPFYD----------SPQDDM----GYDIANYEKVWP 82
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT---------NEADDANPYTTS 130
Y + +++ H G++ I D+V NH + + NP
Sbjct: 83 TYGTNE--------DCFALIEKTHKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDW 134
Query: 131 F-----RGIDN----------KVYY-----MVDGTGQ---LLNYAGCGNTLNCNHPVVME 167
F +G D K Y+ D Q L + LN + +
Sbjct: 135 FFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLFCSTQPDLNWENEDCRK 194
Query: 168 LILDSLRHWVVEYHVDGFRFDLASVLCR 195
I +S + +++ VDGFR D+ S+ +
Sbjct: 195 AIYESAVGYWLDHGVDGFRIDVGSLYSK 222
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI++ NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R +
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMN 229
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP 126
+F+ ++ A H I+VI+D NHT+ A P
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 45/196 (22%)
Query: 20 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 74
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 75 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF--- 131
F M+ +F+ ++ H GI++++D NHT+ A + + TSF
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETD---TSFAEN 154
Query: 132 -RGIDNKVY---YMVDGTGQLLNYAGC----------GNT-----LNCNHPVVMELILDS 172
R DN Y D G + G NT N N+ + + D+
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDA 214
Query: 173 LRHWVVEYHVDGFRFD 188
++ W ++ VDG R D
Sbjct: 215 IKLW-LDMGVDGIRVD 229
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 36 GINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI-NFFSPMSRYAAGGGGPLK--AS 92
GI + E+ P + R+ DH T+ STI N ++ RY G P K
Sbjct: 866 GITSFEMAPQY----------RSSGDH---TFLDSTIDNGYAFTDRYDLGFNTPTKYGTD 912
Query: 93 WEFKEMVKALHGAGIEVILDVVYNH 117
+ + ++ALH A ++V+ DVV N
Sbjct: 913 GDLRATIQALHHANMQVMADVVDNQ 937
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 97/263 (36%), Gaps = 68/263 (25%)
Query: 2 NVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRD 61
N F G + +G+D + LG I+K LG N + L P+F + P +
Sbjct: 181 NSLVFFGGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTN 220
Query: 62 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 121
H +T Y ++ A G L+ ++ +G +ILD V+NHT ++
Sbjct: 221 HKYDTQDYMAVDP-------AFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDS 271
Query: 122 -----------------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC- 160
++P Y T + D+ ++ + LNY G+ +
Sbjct: 272 HPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGANSLPKLNYGNSGSAVRGV 331
Query: 161 ---NHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKD 214
N V + L+ Y VDG+R D A V G +GS + + A
Sbjct: 332 IYNNSNSVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVK 385
Query: 215 AILSRCKIIAE------PWDCRG 231
+ S II E PW +G
Sbjct: 386 GVNSNAAIIGEYWGNANPWTAQG 408
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79
G++ G+I K+ ++ +G A+ + PV ++ H GY + +S
Sbjct: 40 GTWQGIIDKLDYIQGMGFTAIWITPVTA--QLPQTTAYGDAYH-----GYWQQDIYSLNE 92
Query: 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 117
Y + K + ALH G+ +++DVV NH
Sbjct: 93 NYGTAD--------DLKALSSALHERGMYLMVDVVANH 122
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 95 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-MVDGTGQLLNYAG 153
F E V LH G ++++ V +N + + PY RG D K++ DG L+
Sbjct: 347 FPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVW 406
Query: 154 CGNTL-------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV------LCRGTDGS 200
G T+ NC E L H VE+ DG D+ V G +
Sbjct: 407 PGQTVFPDYTNPNCAVWWTKEF---ELFHNQVEF--DGIWIDMNEVSNFVDGSVSGCSTN 461
Query: 201 PLNAPPLIRAIAKDAILSRCKIIA 224
LN PP I + CK +
Sbjct: 462 NLNNPPFTPRILDGYLF--CKTLC 483
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 95 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-MVDGTGQLLNYAG 153
F E V LH G ++++ V +N + + PY RG D K++ DG L+
Sbjct: 347 FPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVW 406
Query: 154 CGNTL-------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV------LCRGTDGS 200
G T+ NC E L H VE+ DG D+ V G +
Sbjct: 407 PGQTVFPDYTNPNCAVWWTKEF---ELFHNQVEF--DGIWIDMNEVSNFVDGSVSGCSTN 461
Query: 201 PLNAPPLIRAIAKDAILSRCKIIA 224
LN PP I + CK +
Sbjct: 462 NLNNPPFTPRILDGYLF--CKTLC 483
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRLD 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 150
+F+ ++ A H I+VI+ NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 151 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 188
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 20 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 74
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 75 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 121
F M+ +F+ ++ H GI++++D NHT+ A
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 20 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 74
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 75 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 121
F M+ +F+ ++ H GI++++D NHT+ A
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 20 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 74
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 75 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 121
F M+ +F+ ++ H GI++++D NHT+ A
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 97/263 (36%), Gaps = 68/263 (25%)
Query: 2 NVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRD 61
N F G + +G+D + LG I+K LG N + L P+F + P +
Sbjct: 181 NSLVFFGGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTN 220
Query: 62 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 121
H +T Y ++ A G L+ ++ +G +ILD V+NHT ++
Sbjct: 221 HKYDTQDYMAVD-------PAFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDS 271
Query: 122 -----------------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC- 160
++P Y T + D+ ++ + LNY G+ +
Sbjct: 272 HPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGV 331
Query: 161 ---NHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKD 214
N V + L+ Y VDG+R D A V G +GS + + A
Sbjct: 332 IYNNSNSVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVK 385
Query: 215 AILSRCKIIAE------PWDCRG 231
+ S II E PW +G
Sbjct: 386 GVNSNAAIIGEYWGNANPWTAQG 408
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 60/184 (32%)
Query: 31 HLLELGINAVELLPVFE--------------FDEMEFQRRRNPRDHMVNTWGYSTINFFS 76
HL ++GI AV + P ++ +D EFQ++ R
Sbjct: 29 HLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVR---------------- 72
Query: 77 PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT-----SF 131
++Y E ++ + +LH ++V DVV NH AD T +
Sbjct: 73 --TKYGTKS--------ELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPAN 122
Query: 132 RGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 191
R + Y + + G GNT + D HW YH DG +D +
Sbjct: 123 RNQETSEEYQIKAWTD-FRFPGRGNTYS-----------DFKWHW---YHFDGADWDESR 167
Query: 192 VLCR 195
+ R
Sbjct: 168 KISR 171
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 142
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 143 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 188
D G+G + NY +C +++L L D +R + EY V GF+ D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFQLD 197
Query: 189 LASVLCRG 196
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 97/263 (36%), Gaps = 68/263 (25%)
Query: 2 NVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRD 61
N F G + +G+D + LG I+K LG N + L P+F + P +
Sbjct: 181 NSLVFFGGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTN 220
Query: 62 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 121
H +T Y ++ A G L+ ++ +G +ILD V+NHT ++
Sbjct: 221 HKYDTQDYMAVD-------PAFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDS 271
Query: 122 -----------------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC- 160
++P Y T + D+ ++ + LNY G+ +
Sbjct: 272 HPWFDKYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGV 331
Query: 161 ---NHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKD 214
N V + L+ Y VDG+R D A V G +GS + + A
Sbjct: 332 IYNNSNSVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVK 385
Query: 215 AILSRCKIIAE------PWDCRG 231
+ S II E PW +G
Sbjct: 386 GVNSNAAIIGEYVGNANPWTAQG 408
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 60/184 (32%)
Query: 31 HLLELGINAVELLPVFE--------------FDEMEFQRRRNPRDHMVNTWGYSTINFFS 76
HL ++GI AV + P ++ +D EFQ++ R
Sbjct: 29 HLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVR---------------- 72
Query: 77 PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT-----SF 131
++Y E ++ + +LH ++V DVV NH AD T +
Sbjct: 73 --TKYGTKS--------ELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPAN 122
Query: 132 RGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 191
R + Y + + G GNT + D HW YH DG +D +
Sbjct: 123 RNQETSEEYQIKAWTD-FRFPGRGNTYS-----------DFKWHW---YHFDGADWDESR 167
Query: 192 VLCR 195
+ R
Sbjct: 168 KISR 171
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 94 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 142
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 143 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 188
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 189 LA 190
+
Sbjct: 198 AS 199
>pdb|3T3K|A Chain A, 1.24 A Structure Of Friedreich's Ataxia Frataxin Variant
Q148r
Length = 129
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 17/58 (29%)
Query: 267 GILATRISGSSDLYRVNKRKPYHSI-----------------NFIIAHDGFTLYDLVS 307
G+L ++ G Y +NKR P I N++ +HDG +L++L++
Sbjct: 49 GVLTVKLGGDLGTYVINKRTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGVSLHELLA 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,609,392
Number of Sequences: 62578
Number of extensions: 797439
Number of successful extensions: 2024
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1707
Number of HSP's gapped (non-prelim): 293
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)