Query 009902
Match_columns 523
No_of_seqs 175 out of 1811
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 18:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02100 glgX_debranch glycog 100.0 1.6E-80 3.5E-85 659.6 47.9 501 1-522 161-688 (688)
2 PRK03705 glycogen debranching 100.0 1.9E-79 4.1E-84 646.2 45.6 490 1-523 156-658 (658)
3 COG1523 PulA Type II secretory 100.0 4.5E-74 9.7E-79 597.4 37.8 500 1-522 177-691 (697)
4 PRK14510 putative bifunctional 100.0 5.5E-72 1.2E-76 625.0 40.4 457 1-477 164-648 (1221)
5 PRK10933 trehalose-6-phosphate 100.0 1E-69 2.2E-74 567.7 34.1 427 1-523 16-551 (551)
6 TIGR02104 pulA_typeI pullulana 100.0 7.6E-69 1.7E-73 570.0 38.0 434 1-493 133-601 (605)
7 TIGR02403 trehalose_treC alpha 100.0 4.1E-69 8.8E-74 564.4 34.2 427 1-522 10-543 (543)
8 PRK10785 maltodextrin glucosid 100.0 9.9E-69 2.1E-73 566.9 31.2 369 17-477 173-568 (598)
9 TIGR02456 treS_nterm trehalose 100.0 5.3E-68 1.2E-72 557.6 35.3 452 1-521 11-537 (539)
10 TIGR02102 pullulan_Gpos pullul 100.0 1.3E-65 2.9E-70 559.3 42.5 479 1-523 457-1005(1111)
11 PRK12313 glycogen branching en 100.0 8.4E-62 1.8E-66 519.4 36.6 442 1-523 153-628 (633)
12 PRK09505 malS alpha-amylase; R 100.0 4.1E-62 8.8E-67 514.0 27.7 372 16-466 223-681 (683)
13 PRK14706 glycogen branching en 100.0 9.5E-61 2.1E-65 503.7 37.5 439 1-523 150-622 (639)
14 PLN02877 alpha-amylase/limit d 100.0 6.6E-61 1.4E-65 511.0 35.0 481 1-522 345-968 (970)
15 PRK05402 glycogen branching en 100.0 9.5E-61 2.1E-65 516.7 36.2 440 1-522 247-723 (726)
16 TIGR02402 trehalose_TreZ malto 100.0 4.4E-61 9.6E-66 501.6 29.7 379 1-473 99-541 (542)
17 TIGR02103 pullul_strch alpha-1 100.0 1.5E-60 3.2E-65 510.5 33.2 475 1-522 258-896 (898)
18 TIGR01515 branching_enzym alph 100.0 1.8E-60 4E-65 505.3 33.6 435 1-521 144-613 (613)
19 PRK12568 glycogen branching en 100.0 1.4E-59 3E-64 492.4 36.2 441 1-522 252-728 (730)
20 PRK09441 cytoplasmic alpha-amy 100.0 7.9E-58 1.7E-62 474.9 32.2 387 20-521 19-479 (479)
21 PRK14705 glycogen branching en 100.0 5.6E-57 1.2E-61 494.5 36.4 433 1-523 753-1223(1224)
22 PLN02960 alpha-amylase 100.0 2.5E-54 5.5E-59 452.2 37.4 447 1-522 401-891 (897)
23 KOG0470 1,4-alpha-glucan branc 100.0 8.4E-54 1.8E-58 432.6 30.0 467 1-501 235-732 (757)
24 PLN02447 1,4-alpha-glucan-bran 100.0 2.7E-52 5.9E-57 438.1 36.3 449 1-523 235-731 (758)
25 TIGR03852 sucrose_gtfA sucrose 100.0 3.5E-53 7.5E-58 425.2 24.1 397 1-473 3-467 (470)
26 PLN00196 alpha-amylase; Provis 100.0 5.1E-52 1.1E-56 418.4 27.5 327 18-467 39-402 (428)
27 PF00128 Alpha-amylase: Alpha 100.0 1.5E-51 3.2E-56 409.6 16.8 278 20-378 1-313 (316)
28 PRK13840 sucrose phosphorylase 100.0 1E-49 2.3E-54 402.5 26.6 399 4-477 8-477 (495)
29 PLN02361 alpha-amylase 100.0 9.8E-49 2.1E-53 389.5 31.9 316 20-452 26-367 (401)
30 COG0296 GlgB 1,4-alpha-glucan 100.0 5.7E-49 1.2E-53 402.8 25.6 438 1-522 150-628 (628)
31 KOG0471 Alpha-amylase [Carbohy 100.0 1.8E-47 3.9E-52 398.0 26.5 438 1-521 23-544 (545)
32 COG0366 AmyA Glycosidases [Car 100.0 4.5E-47 9.7E-52 402.2 24.4 392 2-477 7-494 (505)
33 TIGR02455 TreS_stutzeri trehal 100.0 1.6E-44 3.4E-49 364.9 28.5 446 28-523 79-682 (688)
34 PLN02784 alpha-amylase 100.0 4.4E-43 9.6E-48 365.9 27.6 317 3-452 506-857 (894)
35 PLN03244 alpha-amylase; Provis 100.0 1.6E-40 3.5E-45 341.7 31.9 395 69-522 425-866 (872)
36 TIGR02401 trehalose_TreY malto 100.0 2.3E-38 5E-43 334.4 25.2 179 17-225 10-282 (825)
37 PRK14511 maltooligosyl trehalo 100.0 1.8E-32 3.8E-37 291.0 28.9 93 17-130 14-106 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 5.5E-26 1.2E-30 210.3 21.2 386 22-494 39-467 (504)
39 smart00642 Aamy Alpha-amylase 99.9 5.6E-27 1.2E-31 207.2 9.7 96 1-120 2-97 (166)
40 PRK14507 putative bifunctional 99.8 1.4E-20 3E-25 212.5 18.3 94 17-131 752-845 (1693)
41 TIGR01531 glyc_debranch glycog 99.8 4.1E-17 8.9E-22 179.0 23.5 91 16-131 125-220 (1464)
42 COG3280 TreY Maltooligosyl tre 99.8 3.3E-18 7.2E-23 174.0 11.9 89 20-129 16-104 (889)
43 PF14872 GHL5: Hypothetical gl 99.6 3.9E-14 8.5E-19 142.3 23.9 143 20-192 193-392 (811)
44 PF11941 DUF3459: Domain of un 99.1 1.4E-10 3E-15 92.0 7.4 89 408-520 1-89 (89)
45 PF14701 hDGE_amylase: glucano 99.0 4E-10 8.7E-15 111.9 8.1 97 17-132 16-113 (423)
46 KOG3625 Alpha amylase [Carbohy 98.8 2.2E-07 4.7E-12 97.5 16.8 96 18-132 137-233 (1521)
47 PF14871 GHL6: Hypothetical gl 98.7 3.3E-07 7.2E-12 77.4 11.2 125 27-189 4-132 (132)
48 PF11852 DUF3372: Domain of un 98.6 5.3E-08 1.1E-12 84.3 5.5 115 403-522 41-166 (168)
49 PF02638 DUF187: Glycosyl hydr 98.6 5.1E-07 1.1E-11 88.6 11.9 148 20-193 16-166 (311)
50 PF02806 Alpha-amylase_C: Alph 98.5 5.2E-08 1.1E-12 78.1 3.3 81 442-523 6-94 (95)
51 PF02324 Glyco_hydro_70: Glyco 98.5 4.5E-06 9.8E-11 86.0 15.6 285 156-494 144-484 (809)
52 COG1649 Uncharacterized protei 98.1 2.2E-05 4.8E-10 78.3 11.0 147 20-194 61-212 (418)
53 PRK14508 4-alpha-glucanotransf 98.1 0.0014 3.1E-08 68.3 24.2 41 1-48 11-52 (497)
54 cd06593 GH31_xylosidase_YicI Y 98.0 5.6E-05 1.2E-09 74.6 11.4 138 20-196 21-164 (308)
55 cd06592 GH31_glucosidase_KIAA1 97.9 9.9E-05 2.2E-09 72.5 11.5 133 20-192 27-166 (303)
56 PF02065 Melibiase: Melibiase; 97.9 0.00016 3.4E-09 73.0 12.5 139 23-194 58-196 (394)
57 PF10438 Cyc-maltodext_C: Cycl 97.8 8E-06 1.7E-10 61.6 2.0 67 443-521 7-77 (78)
58 PF02324 Glyco_hydro_70: Glyco 97.7 3.9E-05 8.4E-10 79.3 5.0 86 21-120 585-674 (809)
59 PF08533 Glyco_hydro_42C: Beta 97.6 0.00015 3.2E-09 51.9 5.9 56 447-521 2-57 (58)
60 PLN02635 disproportionating en 97.6 0.0015 3.3E-08 68.2 15.4 41 1-48 34-75 (538)
61 PRK14510 putative bifunctional 97.6 0.011 2.5E-07 68.4 23.0 44 1-49 729-772 (1221)
62 PRK14507 putative bifunctional 97.5 0.00062 1.4E-08 79.3 12.3 123 355-492 1500-1666(1693)
63 smart00632 Aamy_C Aamy_C domai 97.5 0.00033 7.2E-09 54.0 6.6 72 443-521 6-78 (81)
64 cd06597 GH31_transferase_CtsY 97.5 0.00032 6.8E-09 70.0 8.0 97 94-193 86-189 (340)
65 cd06599 GH31_glycosidase_Aec37 97.4 0.00099 2.1E-08 65.9 10.5 92 94-192 74-169 (317)
66 COG1501 Alpha-glucosidases, fa 97.2 0.089 1.9E-06 57.9 22.8 94 94-195 322-419 (772)
67 cd06594 GH31_glucosidase_YihQ 97.1 0.0013 2.8E-08 64.9 7.3 143 20-194 20-169 (317)
68 cd06591 GH31_xylosidase_XylS X 97.0 0.0023 4.9E-08 63.4 8.0 91 95-192 68-160 (319)
69 PF13200 DUF4015: Putative gly 96.9 0.0091 2E-07 58.2 11.0 139 20-193 10-149 (316)
70 PF13199 Glyco_hydro_66: Glyco 96.8 0.015 3.2E-07 61.2 12.0 162 21-213 116-297 (559)
71 cd06600 GH31_MGAM-like This fa 96.7 0.0045 9.7E-08 61.2 7.7 134 20-191 21-160 (317)
72 PRK10658 putative alpha-glucos 96.7 0.013 2.7E-07 63.7 11.3 93 94-194 326-421 (665)
73 cd06604 GH31_glucosidase_II_Ma 96.6 0.016 3.5E-07 58.0 10.8 133 21-192 22-160 (339)
74 COG3280 TreY Maltooligosyl tre 96.6 0.0025 5.3E-08 67.1 4.6 99 354-466 711-826 (889)
75 cd06602 GH31_MGAM_SI_GAA This 96.5 0.0096 2.1E-07 59.4 8.1 139 21-192 22-166 (339)
76 PRK14582 pgaB outer membrane N 96.3 0.048 1E-06 58.8 12.3 140 20-193 331-470 (671)
77 cd06598 GH31_transferase_CtsZ 96.2 0.015 3.2E-07 57.6 7.9 89 95-191 72-164 (317)
78 PRK10426 alpha-glucosidase; Pr 96.1 0.018 3.9E-07 62.3 8.1 96 94-196 270-368 (635)
79 PF01055 Glyco_hydro_31: Glyco 96.0 0.0089 1.9E-07 62.3 5.0 97 93-193 83-182 (441)
80 PRK11052 malQ 4-alpha-glucanot 95.3 0.16 3.5E-06 55.3 11.7 42 1-47 148-189 (695)
81 COG3589 Uncharacterized conser 95.1 0.046 9.9E-07 52.6 6.1 25 93-117 49-73 (360)
82 PLN02763 hydrolase, hydrolyzin 94.7 0.1 2.2E-06 58.5 8.3 92 94-191 242-336 (978)
83 cd06564 GH20_DspB_LnbB-like Gl 94.7 0.18 3.9E-06 50.1 9.3 73 93-181 82-155 (326)
84 cd06595 GH31_xylosidase_XylS-l 94.6 0.064 1.4E-06 52.4 5.8 84 94-190 75-158 (292)
85 cd06542 GH18_EndoS-like Endo-b 94.5 0.15 3.3E-06 48.8 8.0 62 93-189 51-112 (255)
86 cd06603 GH31_GANC_GANAB_alpha 94.4 0.11 2.5E-06 51.9 7.3 134 20-191 21-162 (339)
87 TIGR00217 malQ 4-alpha-glucano 94.3 0.26 5.6E-06 51.9 9.8 42 1-49 20-62 (513)
88 cd02875 GH18_chitobiase Chitob 93.5 0.17 3.8E-06 50.9 6.6 54 96-189 67-120 (358)
89 KOG1065 Maltase glucoamylase a 93.5 0.56 1.2E-05 50.9 10.6 135 20-191 308-448 (805)
90 cd06568 GH20_SpHex_like A subg 93.4 0.68 1.5E-05 46.0 10.5 124 20-178 15-151 (329)
91 cd02742 GH20_hexosaminidase Be 93.4 0.23 5E-06 48.8 7.1 122 20-180 13-147 (303)
92 PF00150 Cellulase: Cellulase 93.3 0.11 2.3E-06 50.3 4.6 62 24-114 22-83 (281)
93 PF05913 DUF871: Bacterial pro 93.2 0.094 2E-06 52.4 4.0 62 20-118 11-72 (357)
94 PF14488 DUF4434: Domain of un 93.2 0.38 8.2E-06 42.6 7.4 68 22-116 19-88 (166)
95 COG1640 MalQ 4-alpha-glucanotr 93.2 3.4 7.4E-05 43.2 15.3 30 20-49 32-62 (520)
96 PF02449 Glyco_hydro_42: Beta- 93.1 0.35 7.6E-06 49.1 8.2 123 23-189 10-136 (374)
97 PF07745 Glyco_hydro_53: Glyco 92.9 0.27 5.9E-06 48.5 6.6 54 26-115 27-80 (332)
98 cd06601 GH31_lyase_GLase GLase 92.8 0.35 7.5E-06 48.1 7.4 68 95-191 66-133 (332)
99 cd06562 GH20_HexA_HexB-like Be 92.6 0.57 1.2E-05 47.0 8.8 126 20-181 15-149 (348)
100 cd02871 GH18_chitinase_D-like 92.6 0.5 1.1E-05 46.7 8.2 59 93-189 60-118 (312)
101 cd06545 GH18_3CO4_chitinase Th 92.4 0.45 9.7E-06 45.5 7.4 62 93-189 46-107 (253)
102 cd06570 GH20_chitobiase-like_1 92.3 1 2.2E-05 44.4 9.8 125 20-180 15-146 (311)
103 TIGR01370 cysRS possible cyste 91.9 0.4 8.7E-06 46.9 6.4 66 157-223 137-210 (315)
104 PF02446 Glyco_hydro_77: 4-alp 91.8 0.25 5.5E-06 52.0 5.3 65 1-83 1-66 (496)
105 PF00728 Glyco_hydro_20: Glyco 91.5 0.19 4.1E-06 50.6 3.9 124 20-181 15-156 (351)
106 PF02446 Glyco_hydro_77: 4-alp 91.4 0.48 1E-05 50.0 6.9 24 92-115 191-214 (496)
107 cd06565 GH20_GcnA-like Glycosy 91.0 1.4 3.1E-05 43.2 9.4 112 20-181 14-131 (301)
108 TIGR03849 arch_ComA phosphosul 90.9 0.58 1.3E-05 43.5 6.1 95 13-189 54-155 (237)
109 cd06563 GH20_chitobiase-like T 90.1 2 4.4E-05 43.2 9.8 78 93-180 86-164 (357)
110 PF01120 Alpha_L_fucos: Alpha- 90.0 0.9 1.9E-05 45.6 7.1 119 29-191 97-216 (346)
111 cd06589 GH31 The enzymes of gl 89.9 2.7 5.9E-05 40.4 10.1 95 20-193 21-118 (265)
112 PF02679 ComA: (2R)-phospho-3- 87.4 0.58 1.3E-05 43.8 3.4 60 14-114 68-134 (244)
113 PF10566 Glyco_hydro_97: Glyco 87.3 5.2 0.00011 38.4 9.8 70 14-113 23-93 (273)
114 PLN02950 4-alpha-glucanotransf 87.0 1.2 2.7E-05 50.2 6.3 69 2-84 267-335 (909)
115 PLN02808 alpha-galactosidase 86.3 2.9 6.3E-05 42.2 7.9 72 443-522 306-383 (386)
116 PLN03236 4-alpha-glucanotransf 86.0 1.3 2.8E-05 48.4 5.6 70 1-84 66-135 (745)
117 smart00812 Alpha_L_fucos Alpha 85.9 7.3 0.00016 39.6 10.7 113 29-190 87-202 (384)
118 PRK11052 malQ 4-alpha-glucanot 85.1 1.6 3.4E-05 47.9 5.8 49 20-84 165-216 (695)
119 PF01301 Glyco_hydro_35: Glyco 83.4 1.3 2.9E-05 43.7 4.0 61 24-115 25-85 (319)
120 PRK15452 putative protease; Pr 83.2 8.9 0.00019 39.7 10.0 19 93-111 46-64 (443)
121 TIGR03356 BGL beta-galactosida 82.4 7.5 0.00016 40.2 9.2 99 20-181 51-150 (427)
122 COG3345 GalA Alpha-galactosida 82.4 3.3 7.1E-05 43.0 6.3 142 21-195 307-448 (687)
123 KOG2499 Beta-N-acetylhexosamin 81.6 4.6 0.0001 41.2 6.9 73 93-178 250-323 (542)
124 cd06569 GH20_Sm-chitobiase-lik 81.4 3.3 7.1E-05 43.0 6.2 157 20-178 19-191 (445)
125 cd02874 GH18_CFLE_spore_hydrol 80.9 3 6.5E-05 41.2 5.5 65 95-189 47-111 (313)
126 PF09154 DUF1939: Domain of un 80.2 1.9 4.1E-05 30.5 2.7 56 460-520 1-56 (57)
127 cd00598 GH18_chitinase-like Th 79.5 9.5 0.00021 34.9 8.2 62 93-189 49-112 (210)
128 PRK09852 cryptic 6-phospho-bet 79.5 8 0.00017 40.5 8.3 102 20-181 68-169 (474)
129 PF03198 Glyco_hydro_72: Gluca 79.2 2.5 5.5E-05 40.9 4.1 28 20-47 50-77 (314)
130 PF14883 GHL13: Hypothetical g 78.2 31 0.00067 33.1 10.9 120 28-188 22-143 (294)
131 COG2730 BglC Endoglucanase [Ca 77.4 4.8 0.0001 41.4 5.9 61 25-113 75-136 (407)
132 PRK09856 fructoselysine 3-epim 77.2 30 0.00065 33.2 11.2 51 24-110 14-64 (275)
133 cd02877 GH18_hevamine_XipI_cla 75.9 9.3 0.0002 37.0 7.1 21 93-113 59-79 (280)
134 PRK15014 6-phospho-beta-glucos 75.8 14 0.00031 38.7 8.9 101 21-181 67-167 (477)
135 PF13380 CoA_binding_2: CoA bi 75.4 6.1 0.00013 32.6 5.0 21 24-44 67-87 (116)
136 PLN02692 alpha-galactosidase 75.3 19 0.0004 36.8 9.2 73 443-522 330-408 (412)
137 COG1306 Uncharacterized conser 73.9 20 0.00043 34.4 8.3 146 23-194 77-222 (400)
138 COG2342 Predicted extracellula 73.6 21 0.00045 34.0 8.3 88 93-193 64-151 (300)
139 COG3867 Arabinogalactan endo-1 73.4 16 0.00035 34.9 7.6 22 93-114 104-125 (403)
140 smart00518 AP2Ec AP endonuclea 72.4 35 0.00075 32.7 10.3 53 24-111 11-63 (273)
141 PRK01060 endonuclease IV; Prov 71.1 30 0.00065 33.3 9.5 50 25-109 14-63 (281)
142 cd06546 GH18_CTS3_chitinase GH 71.0 23 0.00051 33.7 8.5 29 161-189 92-120 (256)
143 PLN02229 alpha-galactosidase 70.4 17 0.00038 37.1 7.7 72 444-522 340-417 (427)
144 PF13204 DUF4038: Protein of u 70.1 10 0.00022 36.9 5.9 76 23-117 30-110 (289)
145 cd06547 GH85_ENGase Endo-beta- 69.8 4.6 9.9E-05 40.3 3.5 67 96-193 49-115 (339)
146 PF09260 DUF1966: Domain of un 68.9 11 0.00024 29.5 4.7 73 443-522 4-81 (91)
147 PRK13210 putative L-xylulose 5 67.6 53 0.0012 31.5 10.5 54 24-111 17-70 (284)
148 PRK05628 coproporphyrinogen II 67.4 17 0.00037 36.9 7.1 27 93-119 144-171 (375)
149 PTZ00445 p36-lilke protein; Pr 67.2 15 0.00033 33.6 5.9 19 93-111 78-96 (219)
150 PLN03059 beta-galactosidase; P 66.5 9 0.00019 42.5 5.1 62 23-115 59-120 (840)
151 KOG0496 Beta-galactosidase [Ca 66.4 10 0.00022 40.4 5.3 64 25-119 51-114 (649)
152 PLN03236 4-alpha-glucanotransf 66.3 13 0.00028 41.0 6.2 25 92-116 273-297 (745)
153 cd00019 AP2Ec AP endonuclease 66.1 59 0.0013 31.2 10.4 54 23-111 10-64 (279)
154 COG0826 Collagenase and relate 65.6 48 0.0011 33.1 9.7 52 93-189 49-100 (347)
155 PRK09593 arb 6-phospho-beta-gl 65.4 34 0.00074 36.0 9.0 69 20-119 70-138 (478)
156 PF14701 hDGE_amylase: glucano 64.0 9.9 0.00021 38.8 4.5 38 156-195 364-406 (423)
157 PRK13511 6-phospho-beta-galact 63.8 35 0.00076 35.8 8.8 100 20-181 51-150 (469)
158 TIGR00539 hemN_rel putative ox 63.6 22 0.00049 35.8 7.1 62 27-119 101-163 (360)
159 PRK08207 coproporphyrinogen II 62.8 26 0.00056 36.9 7.6 88 27-190 270-358 (488)
160 smart00636 Glyco_18 Glycosyl h 62.0 30 0.00065 34.4 7.7 28 161-188 87-114 (334)
161 PF08821 CGGC: CGGC domain; I 61.9 26 0.00057 28.4 5.8 27 22-48 51-77 (107)
162 cd06543 GH18_PF-ChiA-like PF-C 61.5 80 0.0017 30.8 10.2 60 93-190 54-113 (294)
163 PF00724 Oxidored_FMN: NADH:fl 61.4 30 0.00065 34.6 7.5 29 90-120 77-105 (341)
164 PLN02950 4-alpha-glucanotransf 61.4 31 0.00068 39.3 8.3 24 92-115 460-483 (909)
165 PRK09589 celA 6-phospho-beta-g 61.2 39 0.00085 35.5 8.5 69 20-119 64-132 (476)
166 TIGR01233 lacG 6-phospho-beta- 60.6 45 0.00098 34.9 8.9 101 20-183 50-150 (467)
167 PRK09997 hydroxypyruvate isome 60.2 20 0.00043 34.1 5.8 87 25-111 17-103 (258)
168 PLN02411 12-oxophytodienoate r 59.4 57 0.0012 33.3 9.2 29 90-120 84-112 (391)
169 PF07555 NAGidase: beta-N-acet 59.1 68 0.0015 31.5 9.2 96 23-187 15-110 (306)
170 TIGR03234 OH-pyruv-isom hydrox 58.3 1.2E+02 0.0025 28.7 10.8 81 24-111 15-102 (254)
171 TIGR01211 ELP3 histone acetylt 57.9 13 0.00028 39.4 4.3 62 27-119 207-268 (522)
172 cd04823 ALAD_PBGS_aspartate_ri 57.5 1.7E+02 0.0037 28.6 11.3 106 21-185 52-159 (320)
173 PF09445 Methyltransf_15: RNA 57.3 27 0.00059 30.7 5.6 67 19-114 54-120 (163)
174 cd04824 eu_ALAD_PBGS_cysteine_ 56.9 1.7E+02 0.0037 28.6 11.1 109 20-185 48-158 (320)
175 TIGR00433 bioB biotin syntheta 56.2 55 0.0012 31.8 8.3 25 93-117 158-182 (296)
176 cd02929 TMADH_HD_FMN Trimethyl 55.8 1.2E+02 0.0026 30.8 10.7 28 91-120 81-108 (370)
177 COG1242 Predicted Fe-S oxidore 55.4 41 0.00089 32.1 6.6 56 93-193 168-223 (312)
178 PRK08208 coproporphyrinogen II 55.2 35 0.00075 35.4 7.0 27 93-119 177-204 (430)
179 cd07944 DRE_TIM_HOA_like 4-hyd 54.6 56 0.0012 31.3 7.8 58 90-193 106-164 (266)
180 PRK09249 coproporphyrinogen II 53.5 45 0.00097 34.9 7.5 27 93-119 187-214 (453)
181 PRK13957 indole-3-glycerol-pho 53.5 35 0.00076 32.3 6.0 21 93-113 138-158 (247)
182 cd02879 GH18_plant_chitinase_c 53.3 33 0.00072 33.5 6.2 28 161-188 88-115 (299)
183 PRK05660 HemN family oxidoredu 53.3 43 0.00094 34.0 7.2 62 27-119 108-170 (378)
184 cd02932 OYE_YqiM_FMN Old yello 53.0 93 0.002 31.0 9.4 98 90-191 74-177 (336)
185 PRK13347 coproporphyrinogen II 52.7 44 0.00096 34.9 7.3 27 93-119 188-215 (453)
186 COG1809 (2R)-phospho-3-sulfola 52.4 24 0.00052 32.3 4.4 21 93-113 119-139 (258)
187 TIGR01210 conserved hypothetic 52.2 20 0.00043 35.4 4.4 24 93-116 155-178 (313)
188 PRK15447 putative protease; Pr 51.5 32 0.0007 33.7 5.7 54 20-113 15-68 (301)
189 PLN02849 beta-glucosidase 51.4 59 0.0013 34.4 8.0 68 20-119 76-143 (503)
190 cd04733 OYE_like_2_FMN Old yel 51.1 79 0.0017 31.5 8.6 28 91-120 80-107 (338)
191 COG0041 PurE Phosphoribosylcar 50.9 35 0.00075 29.4 4.9 52 20-114 13-65 (162)
192 PRK13523 NADPH dehydrogenase N 50.9 1E+02 0.0023 30.7 9.3 86 90-192 78-166 (337)
193 cd02931 ER_like_FMN Enoate red 50.0 86 0.0019 31.9 8.7 28 91-120 81-109 (382)
194 PRK10076 pyruvate formate lyas 49.8 40 0.00086 31.2 5.7 20 92-111 192-211 (213)
195 PF01212 Beta_elim_lyase: Beta 49.5 15 0.00034 35.7 3.1 23 92-114 144-166 (290)
196 PF00490 ALAD: Delta-aminolevu 49.4 96 0.0021 30.4 8.2 109 21-186 55-165 (324)
197 PLN02814 beta-glucosidase 49.3 71 0.0015 33.9 8.1 68 20-119 74-141 (504)
198 PRK09283 delta-aminolevulinic 48.8 2.7E+02 0.0059 27.3 11.3 104 21-185 57-162 (323)
199 smart00052 EAL Putative diguan 48.1 18 0.00039 33.6 3.3 84 20-116 130-213 (241)
200 cd06232 Peptidase_M14-like_5 P 48.0 1.8E+02 0.0039 27.2 9.5 50 93-148 120-170 (240)
201 PRK13384 delta-aminolevulinic 48.0 2.8E+02 0.0061 27.2 11.3 105 20-185 58-164 (322)
202 PF15640 Tox-MPTase4: Metallop 47.6 22 0.00048 29.2 3.1 21 92-112 21-41 (132)
203 COG1891 Uncharacterized protei 47.5 12 0.00025 32.8 1.6 21 93-113 167-187 (235)
204 PF01791 DeoC: DeoC/LacD famil 47.0 16 0.00035 34.3 2.7 30 90-119 109-138 (236)
205 TIGR00538 hemN oxygen-independ 46.7 59 0.0013 34.0 7.1 27 93-119 187-214 (455)
206 PRK10060 RNase II stability mo 46.6 29 0.00062 38.3 5.0 83 20-115 538-620 (663)
207 PRK10605 N-ethylmaleimide redu 46.5 1.5E+02 0.0032 30.0 9.7 29 90-120 76-104 (362)
208 PRK08599 coproporphyrinogen II 46.0 61 0.0013 32.9 6.9 27 93-119 136-163 (377)
209 PF14509 GH97_C: Glycosyl-hydr 45.8 81 0.0018 25.3 6.2 79 444-522 13-101 (103)
210 PRK14581 hmsF outer membrane N 45.5 2.1E+02 0.0046 31.5 11.1 125 28-189 339-466 (672)
211 PRK09989 hypothetical protein; 45.3 45 0.00097 31.7 5.6 80 24-110 16-102 (258)
212 COG2200 Rtn c-di-GMP phosphodi 45.2 32 0.00069 32.8 4.5 82 20-114 133-214 (256)
213 KOG0053 Cystathionine beta-lya 45.0 18 0.0004 36.6 2.8 31 85-115 171-201 (409)
214 PLN02998 beta-glucosidase 44.9 76 0.0016 33.6 7.5 68 20-119 79-146 (497)
215 PF01373 Glyco_hydro_14: Glyco 44.9 39 0.00084 34.2 5.1 65 20-120 13-80 (402)
216 cd04747 OYE_like_5_FMN Old yel 44.5 1.2E+02 0.0026 30.6 8.6 28 91-120 76-103 (361)
217 cd04735 OYE_like_4_FMN Old yel 43.8 1.7E+02 0.0037 29.4 9.7 89 92-192 77-168 (353)
218 PRK00278 trpC indole-3-glycero 43.8 44 0.00095 32.0 5.2 21 93-113 147-167 (260)
219 TIGR01212 radical SAM protein, 43.7 84 0.0018 30.8 7.3 24 93-116 163-186 (302)
220 PRK07379 coproporphyrinogen II 43.2 28 0.0006 35.7 4.0 63 27-120 116-179 (400)
221 COG0626 MetC Cystathionine bet 42.8 21 0.00045 36.3 2.9 31 85-115 158-188 (396)
222 PRK05904 coproporphyrinogen II 42.7 30 0.00064 34.8 4.0 28 93-120 139-167 (353)
223 PF09083 DUF1923: Domain of un 42.6 1.1E+02 0.0024 21.0 5.8 56 444-521 8-63 (64)
224 cd02803 OYE_like_FMN_family Ol 42.5 51 0.0011 32.6 5.7 88 90-191 74-164 (327)
225 PRK01278 argD acetylornithine 42.2 56 0.0012 33.2 6.1 28 93-120 196-223 (389)
226 PRK08195 4-hyroxy-2-oxovalerat 41.7 1.1E+02 0.0024 30.5 7.8 27 167-194 144-171 (337)
227 cd06548 GH18_chitinase The GH1 41.7 33 0.00072 33.9 4.2 28 161-188 105-132 (322)
228 COG1902 NemA NADH:flavin oxido 41.4 1.6E+02 0.0035 29.7 9.0 89 92-193 82-174 (363)
229 cd02930 DCR_FMN 2,4-dienoyl-Co 41.1 1.7E+02 0.0037 29.4 9.2 83 91-191 75-160 (353)
230 PRK05967 cystathionine beta-ly 40.0 34 0.00075 34.9 4.0 26 91-116 164-189 (395)
231 PRK06294 coproporphyrinogen II 39.9 37 0.00079 34.4 4.2 63 27-120 104-167 (370)
232 PRK07094 biotin synthase; Prov 39.8 33 0.00072 33.9 3.8 28 93-120 165-192 (323)
233 cd04734 OYE_like_3_FMN Old yel 39.7 1.8E+02 0.0039 29.1 9.1 88 91-192 75-165 (343)
234 TIGR00542 hxl6Piso_put hexulos 39.7 46 0.00099 32.1 4.7 54 23-110 16-69 (279)
235 PF01136 Peptidase_U32: Peptid 39.5 2E+02 0.0044 26.6 9.0 23 167-190 156-178 (233)
236 PRK06256 biotin synthase; Vali 39.4 31 0.00067 34.4 3.6 25 93-117 187-211 (336)
237 PRK09058 coproporphyrinogen II 39.4 95 0.0021 32.4 7.3 27 93-119 199-226 (449)
238 TIGR03471 HpnJ hopanoid biosyn 39.3 38 0.00083 35.6 4.4 25 93-117 323-347 (472)
239 PRK12928 lipoyl synthase; Prov 38.8 87 0.0019 30.5 6.4 64 19-113 215-278 (290)
240 PF00232 Glyco_hydro_1: Glycos 38.6 42 0.00091 35.1 4.5 101 20-181 55-155 (455)
241 PF13407 Peripla_BP_4: Peripla 38.4 48 0.001 31.0 4.6 47 20-111 39-85 (257)
242 COG1874 LacA Beta-galactosidas 38.0 85 0.0018 34.4 6.7 59 443-522 614-672 (673)
243 PF04476 DUF556: Protein of un 37.9 47 0.001 30.9 4.1 19 93-111 167-185 (235)
244 KOG0259 Tyrosine aminotransfer 37.9 34 0.00073 34.2 3.3 29 93-121 219-247 (447)
245 TIGR03127 RuMP_HxlB 6-phospho 37.8 72 0.0016 28.3 5.4 55 30-111 50-104 (179)
246 cd02933 OYE_like_FMN Old yello 37.6 2.3E+02 0.0049 28.3 9.4 28 91-120 75-102 (338)
247 cd02876 GH18_SI-CLP Stabilin-1 37.5 39 0.00084 33.4 3.9 29 161-189 88-116 (318)
248 PRK02227 hypothetical protein; 37.4 49 0.0011 30.9 4.2 19 93-111 167-185 (238)
249 PRK09028 cystathionine beta-ly 37.2 41 0.00089 34.4 4.1 27 90-116 160-186 (394)
250 COG0134 TrpC Indole-3-glycerol 37.2 37 0.0008 32.2 3.4 21 93-113 143-163 (254)
251 cd06549 GH18_trifunctional GH1 37.1 39 0.00084 33.1 3.8 30 160-189 83-112 (298)
252 TIGR03217 4OH_2_O_val_ald 4-hy 36.5 1.5E+02 0.0032 29.5 7.8 27 167-194 143-170 (333)
253 PF03711 OKR_DC_1_C: Orn/Lys/A 36.2 39 0.00084 28.7 3.1 38 362-424 87-124 (136)
254 PF03932 CutC: CutC family; I 36.2 1.9E+02 0.0041 26.5 7.7 51 20-111 69-119 (201)
255 TIGR00510 lipA lipoate synthas 36.0 1E+02 0.0022 30.2 6.4 62 19-111 218-279 (302)
256 cd07939 DRE_TIM_NifV Streptomy 35.9 1.4E+02 0.003 28.4 7.3 58 90-193 107-165 (259)
257 smart00733 Mterf Mitochondrial 35.9 23 0.0005 20.4 1.3 17 22-38 15-31 (31)
258 TIGR00666 PBP4 D-alanyl-D-alan 35.8 1.2E+02 0.0026 30.4 7.0 67 30-119 27-97 (345)
259 PRK04302 triosephosphate isome 35.6 75 0.0016 29.5 5.3 21 93-113 101-121 (223)
260 COG0113 HemB Delta-aminolevuli 35.6 1.3E+02 0.0028 29.2 6.7 28 21-48 59-86 (330)
261 cd02872 GH18_chitolectin_chito 35.6 40 0.00087 33.9 3.7 28 161-188 92-119 (362)
262 PRK11059 regulatory protein Cs 35.2 45 0.00098 36.6 4.3 84 20-116 530-613 (640)
263 COG1441 MenC O-succinylbenzoat 35.0 42 0.00091 30.9 3.2 22 92-113 243-264 (321)
264 PF12683 DUF3798: Protein of u 34.8 73 0.0016 30.3 4.9 24 162-185 180-203 (275)
265 cd04724 Tryptophan_synthase_al 34.7 79 0.0017 29.8 5.3 25 93-117 116-140 (242)
266 cd07940 DRE_TIM_IPMS 2-isoprop 34.6 1.7E+02 0.0037 28.0 7.7 57 91-193 112-169 (268)
267 PRK08446 coproporphyrinogen II 34.4 56 0.0012 32.8 4.5 27 93-119 134-161 (350)
268 COG3669 Alpha-L-fucosidase [Ca 34.3 4.3E+02 0.0093 26.9 10.2 71 29-130 60-131 (430)
269 TIGR00217 malQ 4-alpha-glucano 34.2 54 0.0012 34.8 4.5 54 170-226 295-360 (513)
270 PLN02803 beta-amylase 33.9 4.7E+02 0.01 27.7 10.9 66 20-121 101-172 (548)
271 PF01053 Cys_Met_Meta_PP: Cys/ 33.7 40 0.00087 34.4 3.3 29 87-115 151-180 (386)
272 cd03174 DRE_TIM_metallolyase D 33.7 1.6E+02 0.0035 27.8 7.5 28 21-48 17-44 (265)
273 PF07071 DUF1341: Protein of u 33.4 48 0.001 30.0 3.3 23 87-109 158-180 (218)
274 PF00704 Glyco_hydro_18: Glyco 33.4 46 0.00099 33.0 3.7 29 161-189 95-123 (343)
275 PRK09936 hypothetical protein; 33.0 1.4E+02 0.003 28.9 6.4 58 22-115 37-94 (296)
276 COG0520 csdA Selenocysteine ly 32.8 41 0.0009 34.5 3.3 35 72-114 166-200 (405)
277 cd02803 OYE_like_FMN_family Ol 32.4 3.2E+02 0.0069 26.9 9.6 72 21-116 135-218 (327)
278 PRK09057 coproporphyrinogen II 32.4 55 0.0012 33.3 4.1 63 27-120 105-167 (380)
279 cd04795 SIS SIS domain. SIS (S 32.3 60 0.0013 24.4 3.5 19 93-111 61-79 (87)
280 COG1105 FruK Fructose-1-phosph 32.3 57 0.0012 32.0 3.9 22 93-114 146-167 (310)
281 PRK13361 molybdenum cofactor b 32.2 84 0.0018 31.2 5.3 19 93-111 170-188 (329)
282 PRK08255 salicylyl-CoA 5-hydro 32.0 2.9E+02 0.0064 31.1 10.1 99 90-192 472-575 (765)
283 PRK05692 hydroxymethylglutaryl 32.0 1.7E+02 0.0038 28.3 7.3 64 90-193 117-181 (287)
284 TIGR01496 DHPS dihydropteroate 31.8 2.2E+02 0.0048 27.1 7.9 72 2-112 9-81 (257)
285 PF12690 BsuPI: Intracellular 31.5 1.2E+02 0.0027 23.1 4.9 60 460-522 5-66 (82)
286 PRK12677 xylose isomerase; Pro 31.5 53 0.0011 33.4 3.8 65 22-116 113-182 (384)
287 TIGR03540 DapC_direct LL-diami 31.4 1.2E+02 0.0027 30.5 6.5 28 93-120 184-211 (383)
288 PRK06582 coproporphyrinogen II 31.2 65 0.0014 32.9 4.4 63 27-120 112-174 (390)
289 TIGR02109 PQQ_syn_pqqE coenzym 31.0 1.3E+02 0.0028 30.1 6.6 23 93-115 132-154 (358)
290 COG2355 Zn-dependent dipeptida 30.9 1.1E+02 0.0024 30.0 5.6 66 22-120 107-172 (313)
291 PLN02389 biotin synthase 30.8 94 0.002 31.6 5.4 25 93-117 213-237 (379)
292 PRK08898 coproporphyrinogen II 30.7 56 0.0012 33.4 3.9 63 27-120 123-185 (394)
293 PRK09856 fructoselysine 3-epim 30.6 66 0.0014 30.7 4.2 59 24-113 91-149 (275)
294 cd02878 GH18_zymocin_alpha Zym 30.5 56 0.0012 32.7 3.8 28 162-189 88-115 (345)
295 PRK05799 coproporphyrinogen II 30.3 65 0.0014 32.6 4.3 27 93-119 135-162 (374)
296 PRK13561 putative diguanylate 30.3 62 0.0013 35.5 4.4 77 20-115 531-613 (651)
297 cd03416 CbiX_SirB_N Sirohydroc 30.2 1E+02 0.0022 24.3 4.5 26 23-48 44-69 (101)
298 cd08560 GDPD_EcGlpQ_like_1 Gly 29.8 1.3E+02 0.0028 30.3 6.1 20 95-114 280-299 (356)
299 PRK05939 hypothetical protein; 29.7 62 0.0013 33.1 4.0 24 92-115 147-170 (397)
300 cd00384 ALAD_PBGS Porphobilino 29.6 5.5E+02 0.012 25.2 11.5 105 20-185 48-154 (314)
301 cd05014 SIS_Kpsf KpsF-like pro 29.0 67 0.0015 26.4 3.5 60 30-111 20-79 (128)
302 TIGR02127 pyrF_sub2 orotidine 29.0 63 0.0014 30.9 3.6 25 92-116 72-96 (261)
303 PRK13802 bifunctional indole-3 28.9 1E+02 0.0023 34.0 5.7 21 93-113 147-167 (695)
304 cd04726 KGPDC_HPS 3-Keto-L-gul 28.8 1.1E+02 0.0024 27.5 5.2 23 93-115 90-112 (202)
305 TIGR03470 HpnH hopanoid biosyn 28.7 1.1E+02 0.0023 30.4 5.3 19 20-38 146-164 (318)
306 PRK13125 trpA tryptophan synth 28.6 1.2E+02 0.0027 28.5 5.5 23 93-115 116-138 (244)
307 TIGR02336 1,3-beta-galactosyl- 28.4 1.5E+02 0.0032 32.3 6.4 35 156-190 178-213 (719)
308 PF00155 Aminotran_1_2: Aminot 28.4 91 0.002 31.1 5.0 28 93-120 168-195 (363)
309 COG1082 IolE Sugar phosphate i 28.4 1.1E+02 0.0023 29.1 5.3 22 23-44 15-36 (274)
310 PF01261 AP_endonuc_2: Xylose 28.3 30 0.00065 31.2 1.3 45 29-111 1-45 (213)
311 cd02873 GH18_IDGF The IDGF's ( 28.2 63 0.0014 33.3 3.8 28 161-188 101-128 (413)
312 COG1874 LacA Beta-galactosidas 28.2 4.2E+02 0.0091 29.2 9.9 125 23-189 30-159 (673)
313 TIGR03128 RuMP_HxlA 3-hexulose 28.1 1.3E+02 0.0028 27.4 5.5 21 93-113 89-109 (206)
314 PLN02905 beta-amylase 27.9 2.2E+02 0.0047 30.7 7.4 66 20-121 283-351 (702)
315 PRK05942 aspartate aminotransf 27.8 1.2E+02 0.0026 30.8 5.8 28 93-120 190-217 (394)
316 PRK09989 hypothetical protein; 27.6 82 0.0018 29.9 4.2 24 92-115 123-146 (258)
317 cd07941 DRE_TIM_LeuA3 Desulfob 27.5 2.3E+02 0.0049 27.3 7.3 24 89-112 115-138 (273)
318 PRK05968 hypothetical protein; 26.7 77 0.0017 32.3 4.0 24 92-115 163-186 (389)
319 cd05017 SIS_PGI_PMI_1 The memb 26.6 83 0.0018 25.7 3.6 28 76-111 48-75 (119)
320 TIGR02631 xylA_Arthro xylose i 26.4 85 0.0018 32.0 4.2 68 22-116 114-183 (382)
321 PRK07269 cystathionine gamma-s 26.2 55 0.0012 33.0 2.8 24 92-115 152-175 (364)
322 PRK07050 cystathionine beta-ly 26.1 78 0.0017 32.3 4.0 26 92-117 166-191 (394)
323 cd00615 Orn_deC_like Ornithine 26.1 50 0.0011 32.1 2.5 22 93-114 170-191 (294)
324 TIGR01324 cysta_beta_ly_B cyst 25.7 81 0.0018 32.0 4.0 25 92-116 151-175 (377)
325 PRK05093 argD bifunctional N-s 25.6 1.7E+02 0.0036 29.9 6.3 28 93-120 205-232 (403)
326 PRK09997 hydroxypyruvate isome 25.6 84 0.0018 29.8 3.9 24 93-117 124-147 (258)
327 PRK00125 pyrF orotidine 5'-pho 25.2 73 0.0016 30.8 3.3 24 93-116 73-96 (278)
328 cd00609 AAT_like Aspartate ami 25.2 67 0.0015 31.5 3.3 28 92-119 151-178 (350)
329 PF01261 AP_endonuc_2: Xylose 25.1 60 0.0013 29.2 2.7 62 22-115 70-134 (213)
330 PLN02591 tryptophan synthase 25.1 1.7E+02 0.0037 27.8 5.7 25 92-116 117-141 (250)
331 cd06450 DOPA_deC_like DOPA dec 25.1 1.1E+02 0.0025 30.1 4.9 24 93-116 165-188 (345)
332 PLN02460 indole-3-glycerol-pho 25.0 76 0.0017 31.5 3.4 21 93-113 217-237 (338)
333 cd00958 DhnA Class I fructose- 24.9 73 0.0016 29.7 3.3 25 91-115 107-131 (235)
334 PF01229 Glyco_hydro_39: Glyco 24.6 1.3E+02 0.0028 31.7 5.4 67 23-115 39-106 (486)
335 PLN02705 beta-amylase 24.6 2.6E+02 0.0057 30.0 7.3 66 20-121 265-333 (681)
336 PRK08247 cystathionine gamma-s 24.4 89 0.0019 31.5 4.0 24 92-115 152-175 (366)
337 PTZ00372 endonuclease 4-like p 24.4 7.9E+02 0.017 25.3 11.3 98 24-193 142-243 (413)
338 TIGR02666 moaA molybdenum cofa 24.4 1.4E+02 0.0031 29.5 5.5 18 93-110 169-186 (334)
339 TIGR01140 L_thr_O3P_dcar L-thr 24.1 88 0.0019 30.9 3.8 28 92-119 144-171 (330)
340 PLN02509 cystathionine beta-ly 24.1 90 0.002 32.7 4.0 24 92-115 233-256 (464)
341 PRK11359 cyclic-di-GMP phospho 24.1 70 0.0015 36.0 3.5 85 20-117 675-759 (799)
342 TIGR00262 trpA tryptophan synt 24.0 1.9E+02 0.0042 27.5 6.0 26 92-117 126-151 (256)
343 PRK02627 acetylornithine amino 24.0 1.9E+02 0.0041 29.3 6.4 28 93-120 203-230 (396)
344 COG1448 TyrB Aspartate/tyrosin 24.0 1.8E+02 0.0038 29.4 5.6 28 93-120 192-219 (396)
345 PRK04161 tagatose 1,6-diphosph 23.8 1.2E+02 0.0025 29.9 4.4 71 12-115 94-166 (329)
346 cd07938 DRE_TIM_HMGL 3-hydroxy 23.7 2.2E+02 0.0048 27.4 6.4 64 90-193 111-175 (274)
347 cd05005 SIS_PHI Hexulose-6-pho 23.5 2.4E+02 0.0053 24.8 6.3 19 93-111 89-107 (179)
348 PF00834 Ribul_P_3_epim: Ribul 23.2 1.8E+02 0.0039 26.5 5.4 80 24-116 93-176 (201)
349 PF00218 IGPS: Indole-3-glycer 23.2 93 0.002 29.6 3.6 21 93-113 145-165 (254)
350 PLN02757 sirohydrochlorine fer 23.0 1.7E+02 0.0037 25.4 4.9 24 25-48 60-83 (154)
351 COG4943 Predicted signal trans 22.9 83 0.0018 32.6 3.3 21 94-114 459-479 (524)
352 COG1103 Archaea-specific pyrid 22.9 86 0.0019 29.9 3.1 33 75-115 163-195 (382)
353 TIGR03569 NeuB_NnaB N-acetylne 22.8 2E+02 0.0043 28.6 5.9 87 17-113 10-96 (329)
354 PF02879 PGM_PMM_II: Phosphogl 22.8 1.6E+02 0.0035 23.3 4.5 13 32-44 41-53 (104)
355 cd00614 CGS_like CGS_like: Cys 22.7 69 0.0015 32.3 2.8 23 93-115 142-164 (369)
356 TIGR00542 hxl6Piso_put hexulos 22.6 1.4E+02 0.0031 28.6 4.9 23 92-114 132-154 (279)
357 COG3934 Endo-beta-mannanase [C 22.4 1.4E+02 0.0031 31.0 4.7 68 23-120 26-96 (587)
358 cd03413 CbiK_C Anaerobic cobal 22.3 61 0.0013 26.0 1.8 24 25-48 44-67 (103)
359 PRK05301 pyrroloquinoline quin 22.3 2.2E+02 0.0047 28.8 6.4 23 93-115 141-163 (378)
360 PF03644 Glyco_hydro_85: Glyco 22.3 47 0.001 32.7 1.4 21 96-116 45-65 (311)
361 cd05013 SIS_RpiR RpiR-like pro 22.3 1.1E+02 0.0025 25.1 3.7 70 20-111 22-92 (139)
362 PF00202 Aminotran_3: Aminotra 22.2 2.2E+02 0.0047 28.4 6.2 28 93-120 198-225 (339)
363 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.1 1.1E+02 0.0023 25.1 3.5 25 79-111 54-78 (126)
364 TIGR03586 PseI pseudaminic aci 22.1 2.2E+02 0.0047 28.3 6.0 87 17-113 11-97 (327)
365 PRK09257 aromatic amino acid a 22.0 2E+02 0.0044 29.2 6.1 28 93-120 192-219 (396)
366 TIGR01814 kynureninase kynuren 21.9 76 0.0016 32.5 3.0 33 74-114 177-209 (406)
367 KOG4175 Tryptophan synthase al 21.9 1.4E+02 0.003 27.1 4.0 81 18-119 75-161 (268)
368 COG1533 SplB DNA repair photol 21.9 1.7E+02 0.0037 28.6 5.2 59 20-119 166-225 (297)
369 PLN02161 beta-amylase 21.8 9.7E+02 0.021 25.4 11.2 65 20-120 114-181 (531)
370 TIGR02317 prpB methylisocitrat 21.8 4.1E+02 0.0089 25.8 7.7 57 169-226 90-152 (285)
371 cd06454 KBL_like KBL_like; thi 21.8 87 0.0019 30.9 3.3 23 93-115 149-171 (349)
372 PLN02801 beta-amylase 21.7 9.6E+02 0.021 25.3 12.0 66 20-121 34-102 (517)
373 cd00019 AP2Ec AP endonuclease 21.7 94 0.002 29.8 3.4 26 92-117 122-147 (279)
374 PF01276 OKR_DC_1: Orn/Lys/Arg 21.5 38 0.00083 34.8 0.6 22 93-114 184-205 (417)
375 PF04343 DUF488: Protein of un 21.5 1E+02 0.0022 25.4 3.1 25 95-119 2-26 (122)
376 PRK08636 aspartate aminotransf 21.5 1.6E+02 0.0035 30.0 5.3 28 93-120 195-222 (403)
377 PRK13111 trpA tryptophan synth 21.5 2.2E+02 0.0047 27.2 5.7 26 92-117 128-153 (258)
378 PF04914 DltD_C: DltD C-termin 21.4 1.2E+02 0.0027 25.5 3.6 56 92-182 35-90 (130)
379 KOG0257 Kynurenine aminotransf 21.4 80 0.0017 32.0 2.8 108 20-128 101-227 (420)
380 PF12996 DUF3880: DUF based on 21.4 63 0.0014 24.4 1.7 21 28-48 29-49 (79)
381 PRK13209 L-xylulose 5-phosphat 21.3 1.5E+02 0.0033 28.3 4.9 53 24-111 22-75 (283)
382 PF00563 EAL: EAL domain; Int 21.2 77 0.0017 29.2 2.6 77 25-115 136-212 (236)
383 TIGR03234 OH-pyruv-isom hydrox 21.1 1.1E+02 0.0023 28.9 3.6 22 93-114 123-144 (254)
384 PRK12399 tagatose 1,6-diphosph 21.1 1.4E+02 0.0029 29.4 4.2 71 12-115 92-164 (324)
385 cd07948 DRE_TIM_HCS Saccharomy 21.1 3.6E+02 0.0078 25.8 7.2 27 88-114 107-133 (262)
386 cd06502 TA_like Low-specificit 21.1 86 0.0019 30.8 3.1 23 92-114 145-167 (338)
387 PF00266 Aminotran_5: Aminotra 21.1 61 0.0013 32.6 2.1 39 68-114 139-177 (371)
388 PRK08776 cystathionine gamma-s 21.1 79 0.0017 32.5 2.9 25 92-116 161-185 (405)
389 PF01964 ThiC: ThiC family; I 21.1 93 0.002 31.5 3.1 27 93-120 242-268 (420)
390 COG0436 Aspartate/tyrosine/aro 21.0 1.4E+02 0.003 30.6 4.6 32 91-122 181-212 (393)
391 PLN00145 tyrosine/nicotianamin 20.9 1.2E+02 0.0025 31.5 4.1 31 90-120 207-237 (430)
392 TIGR01329 cysta_beta_ly_E cyst 20.7 79 0.0017 32.1 2.8 24 92-115 147-170 (378)
393 TIGR02026 BchE magnesium-proto 20.7 1.2E+02 0.0026 32.1 4.2 25 93-117 323-347 (497)
394 PLN02808 alpha-galactosidase 20.7 6.7E+02 0.015 25.6 9.2 94 32-191 63-156 (386)
395 PRK08960 hypothetical protein; 20.7 1.2E+02 0.0026 30.7 4.2 31 90-120 182-212 (387)
396 cd05710 SIS_1 A subgroup of th 20.5 1.3E+02 0.0027 24.7 3.5 27 77-111 53-79 (120)
397 cd00945 Aldolase_Class_I Class 20.4 2.2E+02 0.0047 25.3 5.4 25 22-46 64-88 (201)
398 PF02055 Glyco_hydro_30: O-Gly 20.4 1.7E+02 0.0037 31.0 5.1 31 163-193 200-230 (496)
399 PLN02624 ornithine-delta-amino 20.3 2.3E+02 0.0051 29.7 6.3 28 93-120 245-272 (474)
400 PF13580 SIS_2: SIS domain; PD 20.3 1.1E+02 0.0024 25.8 3.2 31 73-111 105-135 (138)
401 PF00682 HMGL-like: HMGL-like 20.3 3.9E+02 0.0085 24.7 7.3 58 90-193 105-163 (237)
402 PRK13813 orotidine 5'-phosphat 20.2 3E+02 0.0064 25.2 6.3 32 73-113 82-113 (215)
403 PRK07582 cystathionine gamma-l 20.2 86 0.0019 31.6 2.9 24 92-115 148-171 (366)
404 PRK09331 Sep-tRNA:Cys-tRNA syn 20.1 1E+02 0.0022 31.4 3.4 32 77-116 167-198 (387)
No 1
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.6e-80 Score=659.56 Aligned_cols=501 Identities=48% Similarity=0.821 Sum_probs=417.6
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc--chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK--IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~--Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd 78 (523)
||||+|++.+ .+++...+|||+||+++ |||||+||||+||||||+++....... ......+|||++.||++|+
T Consensus 161 ~hvr~Ft~~~-~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~----~~~~~~ywGYd~~~y~a~d 235 (688)
T TIGR02100 161 AHVKGFTQLH-PDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLL----EKGLRNYWGYNTLGFFAPE 235 (688)
T ss_pred EEhHHhcCCC-CCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCcccccc----ccCCCCccCcCcccccccC
Confidence 6999998764 34556678999999996 999999999999999999983211100 0111357999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCC--CCccccCCcCC
Q 009902 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGT--GQLLNYAGCGN 156 (523)
Q Consensus 79 ~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 156 (523)
++||+.+ +++|||+||++||++||+||||+|+|||+..+...+.. .+.+.+++.||..+++ +.+.++++|++
T Consensus 236 ~~y~~~g-----~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~-~~~~~d~~~yy~~~~~~~~~~~~~~g~gn 309 (688)
T TIGR02100 236 PRYLASG-----QVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTL-SFRGIDNASYYRLQPDDKRYYINDTGTGN 309 (688)
T ss_pred hhhcCCC-----CHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcc-cccCCCCCcceEecCCCCceecCCCCccc
Confidence 9996531 25999999999999999999999999999844333322 4555666788887654 67888999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCC-cCccc
Q 009902 157 TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR-GLYLV 235 (523)
Q Consensus 157 dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~-~~~~~ 235 (523)
+||+++|+|+++|++++++|++++||||||||+|..|.++..++ ....++++++.++...|++++|||.|..+ +.+..
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~-~~~~~~~~~i~~d~~~~~~~ligE~W~~~~~~~~~ 388 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGF-DMLSGFFTAIRQDPVLAQVKLIAEPWDIGPGGYQV 388 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCC-cccHHHHHHHHhCcccCCeEEEEeeecCCCCcccc
Confidence 99999999999999999999999999999999999998764332 22567899999887889999999999876 56666
Q ss_pred CCCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhccccccc
Q 009902 236 GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEA 315 (523)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~ 315 (523)
+.|+. .+++||+.|++.++.|+.|..+....+..++.++.+++......|..++|||++||+.|+.+++.+..+++.+
T Consensus 389 ~~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~ 466 (688)
T TIGR02100 389 GNFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEA 466 (688)
T ss_pred cCCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCchHHHHHHhhccchhh
Confidence 66652 4589999999999999999988899999999999888876666788999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCCCCCCCCCcccc
Q 009902 316 NGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQW 395 (523)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W 395 (523)
+|+.+.+|.+.++||||+.+|...++.....+.+++|++++++||+||+||||||||+|+++.|+.++|++++++++|+|
T Consensus 467 nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW 546 (688)
T TIGR02100 467 NGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDW 546 (688)
T ss_pred ccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCc
Confidence 99999999999999999999998887777788889999999999999999999999999999999999999999999999
Q ss_pred CccccccchHHHHHHHHHHHHhcCcCcCccCcCCc-------Cceeeec--------cccCCCCCcEEEEEEecCC----
Q 009902 396 GQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI-------NDVTWHE--------DNWDNYDSKFLAFTLHDNN---- 456 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~-------~~~~~~~--------~~~~~~~~~v~af~R~~~~---- 456 (523)
+..+. ..++++|+|+||+|||++|+|+.+.+... ..+.|.. .+|......+++|......
T Consensus 547 ~~~~~-~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~ 625 (688)
T TIGR02100 547 SLDEG-DDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGD 625 (688)
T ss_pred ccccc-cHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCC
Confidence 96543 45899999999999999999999887643 3578853 3464445699999997532
Q ss_pred ---CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEEe
Q 009902 457 ---GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 457 ---~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~ 522 (523)
.+.++|++|.+..++++.||... ..|..+++++........ ......+.|+|.|++||.+
T Consensus 626 ~~~~~~~~v~~N~~~~~~~~~lP~~~--~~w~~~~dt~~~~~~~~~----~~~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 626 PGADDSLLLLLNAGPEPVPFKLPGGG--GRWELVLDTADEEAPGIH----LDAGQEAELPARSVLLLRR 688 (688)
T ss_pred CCCCCeEEEEECCCCCCeEEECCCCC--CcEEEEecCCCCCCcccc----ccCCCEEEEcCCEEEEEeC
Confidence 14699999999999999999642 689999999654432221 1134689999999999974
No 2
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.9e-79 Score=646.17 Aligned_cols=490 Identities=41% Similarity=0.660 Sum_probs=412.7
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHh--cchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQ--KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~--~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd 78 (523)
||||+|+..+.+ ++....|+|+|+++ +|||||+||||+||||||+++........ .....+|||++.||++|+
T Consensus 156 ~hvr~ft~~~~~-~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~----~g~~~ywGYd~~~yfa~d 230 (658)
T PRK03705 156 AHVRGLTYLHPE-IPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQR----MGLSNYWGYNPLAMFALD 230 (658)
T ss_pred EehhhhcccCCC-CCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccc----cccccccCcccccccccc
Confidence 699999986543 34567799999997 49999999999999999999843211100 112368999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcC
Q 009902 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTL 158 (523)
Q Consensus 79 ~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 158 (523)
++|||.+ ..+++|||+||++||++||+||||+|+|||+..+..+|++ .+.+.+++.||..++++.+.++.+|+++|
T Consensus 231 ~~ygt~~---~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~-~~~~~d~~~yy~~~~~g~~~~~~g~g~~l 306 (658)
T PRK03705 231 PAYASGP---ETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTL-SLRGIDNRSYYWIREDGDYHNWTGCGNTL 306 (658)
T ss_pred cccCCCC---cchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcch-hcccCCCccceEECCCCCcCCCCCccCcc
Confidence 9999963 2567899999999999999999999999999866567765 56666777888888888888999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCC-cCcccCC
Q 009902 159 NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR-GLYLVGK 237 (523)
Q Consensus 159 n~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~-~~~~~~~ 237 (523)
|+++|+|+++|++++++|+++|||||||||+|..|.+.. +++.. .+++++++.+++.++++++||.|+.+ +.+.++.
T Consensus 307 n~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~-~~~~~-~~~~~ai~~d~vl~~~~ligE~Wd~~~~~~~~g~ 384 (658)
T PRK03705 307 NLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTP-EFRQD-APLFTAIQNDPVLSQVKLIAEPWDIGPGGYQVGN 384 (658)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCc-ccchh-hHHHHHHhhCccccceEEEEecccCCCChhhhcC
Confidence 999999999999999999999999999999999998653 34433 56788888888889999999999986 5677777
Q ss_pred CCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhcccccccCC
Q 009902 238 FPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANG 317 (523)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~ 317 (523)
++. .++.||+.|++.++.|+.+..+....++.++.++.+++....+.|.+++|||++||++++.+++.+..++|.++|
T Consensus 385 ~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~~~~~~hn~~ng 462 (658)
T PRK03705 385 FPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCVCFNQKHNEANG 462 (658)
T ss_pred CCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHHhhhccchhhcc
Confidence 763 468999999999999998887888889999999888887666788999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCCCCCCCCCccccCc
Q 009902 318 EGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQ 397 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~ 397 (523)
+.+.+|.+.+++|||+.+|...++.+...+.++.|++++++|+++|+||||||||+|+++.|+.++|+++++.++|+|+.
T Consensus 463 e~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~ 542 (658)
T PRK03705 463 EENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQ 542 (658)
T ss_pred cccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCCCCCCccCCCCccccccch
Confidence 99999999999999999999988888888888999999999999999999999999999999999999999999999986
Q ss_pred cccccchHHHHHHHHHHHHhcCcCcCccCcCC--cCceeeecc--------ccCCCCCcEEEEEEecCCCCeEEEEEeCC
Q 009902 398 LETKKNSHYRFFSEVIKFRQSRRVFGREDFLN--INDVTWHED--------NWDNYDSKFLAFTLHDNNGADIYLAFNAH 467 (523)
Q Consensus 398 ~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~--~~~~~~~~~--------~~~~~~~~v~af~R~~~~~~~~lvv~N~s 467 (523)
. ..++++|+|+||+|||++|+|+..++.. ...+.|+.. .|. ....+++|.. .+.++|++|.+
T Consensus 543 ~---~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~-~~~~~~~~~~----~~~~~v~~N~~ 614 (658)
T PRK03705 543 A---DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQ-QGPKQLQILL----SDRWLIAINAT 614 (658)
T ss_pred h---hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhC-CcceEEEEEE----CCCEEEEECCC
Confidence 4 3589999999999999999999887722 235777632 242 2256777776 35699999999
Q ss_pred CCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEEeC
Q 009902 468 DFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEAK 523 (523)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~~ 523 (523)
..+++++||. +.|..+++.+... . . .....+.+++.+++||..|
T Consensus 615 ~~~~~~~lp~----~~w~~~~~~~~~~--~---~---~~~~~~~~~~~~~~~~~~~ 658 (658)
T PRK03705 615 LEVTEIVLPE----GEWHAIPPFAGED--N---P---VITAVWHGPAHGVCVFQRQ 658 (658)
T ss_pred CCCeEEECCC----cceEEEEccCCCc--c---c---ccCceeeecCcEEEEEecC
Confidence 9999999985 5799886543221 1 1 1346788999999999865
No 3
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-74 Score=597.40 Aligned_cols=500 Identities=49% Similarity=0.821 Sum_probs=441.8
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc--chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK--IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~--Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd 78 (523)
||||+|+. -.+++++..+|+|.|+++. |+|||+||||+|+||||+......... ..++..+|||+|..|++++
T Consensus 177 ~HVr~fT~-~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~----~~gl~n~WGYdP~~fFAp~ 251 (697)
T COG1523 177 AHVRDFTQ-LHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLD----KSGLNNNWGYDPLNFFAPE 251 (697)
T ss_pred eeeccccc-CCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEecccccc----ccccccccCCCcccccCCC
Confidence 79999997 5678999999999999999 999999999999999999985543322 2244689999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcC
Q 009902 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTL 158 (523)
Q Consensus 79 ~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 158 (523)
++|.+.|. |..|+.|||.||+++|++||+||||||+|||+.++...|-+ .|++.++..||+.++++.+.+++||+.+|
T Consensus 252 ~~Yss~p~-p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~-~f~~id~~~Yyr~~~dg~~~N~TGcGNtl 329 (697)
T COG1523 252 GRYASNPE-PATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTL-SFRGIDPNYYYRLDPDGYYSNGTGCGNTL 329 (697)
T ss_pred ccccCCCC-cchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCccc-ccccCCcCceEEECCCCCeecCCccCccc
Confidence 99999988 99999999999999999999999999999999766556655 88899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCC-cCcccCC
Q 009902 159 NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR-GLYLVGK 237 (523)
Q Consensus 159 n~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~-~~~~~~~ 237 (523)
|.++|.||+.|+|.|++|+++++|||||||.|..+.++.+++ .....++..+..+.......++||+|+.+ ..+++|.
T Consensus 330 n~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~-~~~~~l~~~~~~~p~l~~~kliAepwD~g~~gyqvG~ 408 (697)
T COG1523 330 NTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLF-DINANLFLAGEGDPVLSGVKLIAEPWDIGPGGYQVGN 408 (697)
T ss_pred ccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccccc-ccCcchhhhccCCccccCceeeecchhhcCCCccccc
Confidence 999999999999999999999999999999999998887533 33455677776677777888999999888 7899999
Q ss_pred CCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhcccccccCC
Q 009902 238 FPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANG 317 (523)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~ 317 (523)
|+....+++||..|++.++.|+.|+.+....++.++.++.+++....+.|..++||+.+||+++|.|++.+..++++++|
T Consensus 409 Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneang 488 (697)
T COG1523 409 FPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANG 488 (697)
T ss_pred CCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCCCccceeeEEeecCCCcHhHhhhhccCCChhhc
Confidence 99767889999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCCCCCCCCCccccCc
Q 009902 318 EGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQ 397 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~ 397 (523)
+.+.++.+...+||++.+|..+++.+...+.+..+.+.+.+|+..|+||+-.|||.|.++.++.|+|+++++.++++|+.
T Consensus 489 e~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~ 568 (697)
T COG1523 489 ENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWST 568 (697)
T ss_pred chhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCcccccccccccccccccccccCCcccceeccCc
Confidence 99999999999999999999999988888888888888889999999999999999999999999999999999999992
Q ss_pred cccccchHHHHHHHHHHHHhcCcCcCccCcCCc----Cceeee--------ccccCCCCCcEEEEEEecCCCCeEEEEEe
Q 009902 398 LETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI----NDVTWH--------EDNWDNYDSKFLAFTLHDNNGADIYLAFN 465 (523)
Q Consensus 398 ~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~----~~~~~~--------~~~~~~~~~~v~af~R~~~~~~~~lvv~N 465 (523)
.....+++|.+.||+|||++|+|+...+... .++.|. ...|.......+++..... .+.++|++|
T Consensus 569 --~~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~-~~~~lv~~N 645 (697)
T COG1523 569 --EANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGD-KERLLVLIN 645 (697)
T ss_pred --cccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhcccCCCCceEEEEecCC-CccEEEEec
Confidence 3456899999999999999999999777763 456665 3446555577888888664 689999999
Q ss_pred CCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEEe
Q 009902 466 AHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 466 ~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~ 522 (523)
...++..+.+|... ++|..+++........ ..++++++.|+.||..
T Consensus 646 ~~~~~~~~~lp~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~vl~~ 691 (697)
T COG1523 646 ATAEPVEFELPEDE--GKWAGLVDTSTPPGFD---------IREVSLPGRSVLVLTR 691 (697)
T ss_pred CCccccceeccccc--CcceeeecccCCCCcc---------cceeecCCcEEEEEee
Confidence 99999999999854 6688888776554221 1268999999999874
No 4
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.5e-72 Score=624.97 Aligned_cols=457 Identities=42% Similarity=0.712 Sum_probs=384.1
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHH--hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLI--QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~--~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd 78 (523)
+|||+|+.. .+.+.....|++++|. ++|+|||+||||+||||||+++....... ......||||++.||++||
T Consensus 164 ~hvr~ft~~-~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~----~~g~~~yWGY~~~~yfa~d 238 (1221)
T PRK14510 164 MNVRGFTLR-HDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLP----QLGLSNYWGYNTVAFLAPD 238 (1221)
T ss_pred Eccchhhcc-CCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccc----cccCcCcCCCCCCCCCCcC
Confidence 699999863 3444445567777777 56789999999999999999984322111 1123578999999999999
Q ss_pred CCCC--CCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeC--CCCCccccCCc
Q 009902 79 SRYA--AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD--GTGQLLNYAGC 154 (523)
Q Consensus 79 ~~~G--t~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 154 (523)
|+|| +. +|||+||++||++||+||||+|+|||+.++...|.+ .+.+.++..||..+ ..+.+.++++|
T Consensus 239 p~yg~~~~--------~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~-~~~~~d~~~yy~~~~~~~~~y~~~~G~ 309 (1221)
T PRK14510 239 PRLAPGGE--------EEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTL-SAYGSDNSPYYRLEPGNPKEYENWWGC 309 (1221)
T ss_pred hhhccCcH--------HHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcc-cccCCCCCCceEecCCCCCcccCCCCC
Confidence 9999 75 999999999999999999999999999844333322 44556677888875 34568889999
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCC-cCc
Q 009902 155 GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR-GLY 233 (523)
Q Consensus 155 ~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~-~~~ 233 (523)
...+|+++|+|+++|++++++|++ +||||||||+|..+.+...++|....+.++++.++.+..++++|||+|+.+ ..+
T Consensus 310 gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~~ 388 (1221)
T PRK14510 310 GNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLGGY 388 (1221)
T ss_pred CCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCCcc
Confidence 888999999999999999999996 999999999999997665567777778888888877778888999999876 557
Q ss_pred ccCCCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhccccc
Q 009902 234 LVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHN 313 (523)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~ 313 (523)
..+.|+.. .++||+.|++.++.|+.|+.+....+...+.++.+.+....+.+..++|||+|||++|+.+++.++.++|
T Consensus 389 ~~g~f~~~--~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN 466 (1221)
T PRK14510 389 QYGKFPQY--WGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFTLLDLVSFNHKHN 466 (1221)
T ss_pred ccCCCCcc--eeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchHHHHHhhhccccc
Confidence 77777643 5889999999999999998887889999999988887755567789999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCCCCCCCCCcc
Q 009902 314 EANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNF 393 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~ 393 (523)
.+||+.|.++.+.+.+|||+.+|...++.+..++.+++|++++++||+|||||||||||+|.++.|+.+.|+++++|++|
T Consensus 467 ~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~ 546 (1221)
T PRK14510 467 EANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNGNNNGYAQDNNRGTY 546 (1221)
T ss_pred hhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCCCCCCCCCCCccccC
Confidence 99999999999999999999999999888888889999999999999999999999999999999999999999999999
Q ss_pred ccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCc--------Cceeeec--------cccCCCCCcEEEEEEecCC-
Q 009902 394 QWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI--------NDVTWHE--------DNWDNYDSKFLAFTLHDNN- 456 (523)
Q Consensus 394 ~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~--------~~~~~~~--------~~~~~~~~~v~af~R~~~~- 456 (523)
+|+.. ..++++|+|+||+|||++|+|+.|++... .++.|+. .+|.+.....+++......
T Consensus 547 ~W~~~---~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~ 623 (1221)
T PRK14510 547 PWGNE---DEELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGEQNQDRFWDKRSTEALVAVLNRPAG 623 (1221)
T ss_pred Ccccc---cHHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCCcCChhhcCCCCCCEEEEEEecCCC
Confidence 99874 34899999999999999999999988754 2577763 2344444566665553321
Q ss_pred ----CCeEEEEEeCCCCcEEEEcCC
Q 009902 457 ----GADIYLAFNAHDFFVKVSLPP 477 (523)
Q Consensus 457 ----~~~~lvv~N~s~~~~~~~l~~ 477 (523)
++.++|++|++..++++.||.
T Consensus 624 ~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 624 ERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred CCCCCCeEEEEECCCCCCeEEECCh
Confidence 257999999999999999985
No 5
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1e-69 Score=567.65 Aligned_cols=427 Identities=19% Similarity=0.276 Sum_probs=308.0
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
|+|+||.++|++|. |||+||+++||||++||||+|||+||+++ + ..+|||++.||++|||+
T Consensus 16 i~~~~f~d~~~~~~-----Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~----------~----~~~~gY~~~d~~~id~~ 76 (551)
T PRK10933 16 IYPKSFQDTTGSGT-----GDLRGVTQRLDYLQKLGVDAIWLTPFYVS----------P----QVDNGYDVANYTAIDPT 76 (551)
T ss_pred EEchHhhcCCCCCC-----cCHHHHHHhhHHHHhCCCCEEEECCCCCC----------C----CCCCCCCcccCCCcCcc
Confidence 57999999999987 99999999999999999999999999986 2 14579999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCC--CcCeeeCC------CCCcc---
Q 009902 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN--KVYYMVDG------TGQLL--- 149 (523)
Q Consensus 81 ~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~--- 149 (523)
|||+ +||++||++||++||+||||+|+||++. +|+|++.....+. ++||.|.+ ...+.
T Consensus 77 ~Gt~--------~d~~~lv~~~h~~gi~vilD~V~NH~s~---~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~ 145 (551)
T PRK10933 77 YGTL--------DDFDELVAQAKSRGIRIILDMVFNHTST---QHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKF 145 (551)
T ss_pred cCCH--------HHHHHHHHHHHHCCCEEEEEECCCCccC---chhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccC
Confidence 9998 9999999999999999999999999999 9999977643322 56887732 11111
Q ss_pred -----------------ccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCC----------
Q 009902 150 -----------------NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPL---------- 202 (523)
Q Consensus 150 -----------------~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~---------- 202 (523)
.|...+||||++||+|+++|++++++|+ ++||||||+|+|+++.++. +++.
T Consensus 146 ~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~-~~~~~~~~~~~~~~ 223 (551)
T PRK10933 146 GGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQ-DFPDDLDGDGRRFY 223 (551)
T ss_pred CCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCC-CCCCCccccccccc
Confidence 1223589999999999999999999999 7999999999999998762 2221
Q ss_pred ----CChHHHHHHHhccc-ccCCeEecccCCCCc----CcccCCCCCcccchhhhhHHHHHHHHHHcCCCC-----cHHH
Q 009902 203 ----NAPPLIRAIAKDAI-LSRCKIIAEPWDCRG----LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPG-----MKGI 268 (523)
Q Consensus 203 ----~~~~~~~~~~~~~~-~~~~~~i~E~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 268 (523)
+...+++++++... .+++++|||.|.... .+... ........| .|......++.+... ....
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~--~~~~~~~~f--nf~~~~~~~~~~~~~~~~~~~~~~ 299 (551)
T PRK10933 224 TDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAAL--TGSELSMTF--NFHHLKVDYPNGEKWTLAKPDFVA 299 (551)
T ss_pred CCChHHHHHHHHHHHHhhcccCcEEEEeecCCCHHHHHHhhcc--cCCeeeeEe--cHHHhhhhhccCCcccccccCHHH
Confidence 12456777765422 345789999986431 11111 000111233 333334444433221 1112
Q ss_pred HHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 009902 269 LATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRS 348 (523)
Q Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 348 (523)
+...+... ............|++|||+.|+...++. . ...+.
T Consensus 300 ~~~~~~~~----~~~~~~~~~~~~fl~NHD~~R~~sr~g~-----------------------------~-----~~~~~ 341 (551)
T PRK10933 300 LKTLFRHW----QQGMHNVAWNALFWCNHDQPRIVSRFGD-----------------------------E-----GEYRV 341 (551)
T ss_pred HHHHHHHH----HHhhcccCeeccccCCCCcccHHHHcCC-----------------------------c-----hhHHH
Confidence 22222110 0001111344678999999986543320 0 01233
Q ss_pred HHHHHHHHHHHHcCCeeeeecccccccccCCC-------------------------------CCCCCCCCCCCccccCc
Q 009902 349 RQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN-------------------------------NNSYGHDTAINNFQWGQ 397 (523)
Q Consensus 349 ~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~-------------------------------~~~~~~~~~r~~~~W~~ 397 (523)
..++++++++||+||+|+||||||+||.+..- ....+++.+|.||+|+.
T Consensus 342 ~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~ 421 (551)
T PRK10933 342 PAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDN 421 (551)
T ss_pred HHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCC
Confidence 45788999999999999999999999987310 01225677899999987
Q ss_pred cc--------------------------cccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEE
Q 009902 398 LE--------------------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFT 451 (523)
Q Consensus 398 ~~--------------------------~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~ 451 (523)
.. ..+.|++++||+||+|||++|+|+.|++..+. ..++.|++|.
T Consensus 422 ~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~----------~~~~~v~af~ 491 (551)
T PRK10933 422 GDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLL----------PNHPSLWCYR 491 (551)
T ss_pred CCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEec----------cCCCcEEEEE
Confidence 64 13468999999999999999999999976541 2456899999
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEEeC
Q 009902 452 LHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEAK 523 (523)
Q Consensus 452 R~~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~~ 523 (523)
|... +++++||+|+++.+++++++.. .+.|++++++..... .....++|+||+++|+++|
T Consensus 492 R~~~-~~~~lvv~N~s~~~~~~~~~~~--~~~~~~~l~~~~~~~---------~~~~~~~L~p~~~~~~~~~ 551 (551)
T PRK10933 492 REWQ-GQTLLVIANLSREPQPWQPGQM--RGNWQLLMHNYEEAS---------PQPCAMTLRPFEAVWWLQK 551 (551)
T ss_pred EEcC-CcEEEEEEECCCCCeeeecCcc--cCCceEEeecCcccc---------CCCCcEEECCCeEEEEEeC
Confidence 9887 7899999999999999998732 356777776521110 0124699999999999987
No 6
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=7.6e-69 Score=570.01 Aligned_cols=434 Identities=31% Similarity=0.534 Sum_probs=334.2
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc-----------chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGY 69 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~-----------Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY 69 (523)
||||+|+.++++|+.. .|+|.|++++ |||||+||||+||||||+++.....+. + ....+|||
T Consensus 133 lhv~~ft~~~~~~~~~--~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~---~--~~~~~wGY 205 (605)
T TIGR02104 133 LHIRDFSIHENSGVKN--KGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEED---P--NNAYNWGY 205 (605)
T ss_pred EecchhccCCCCCcCC--CCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCccccccccccc---C--CCCCCCCC
Confidence 6999999988888744 5999998876 999999999999999999983211110 1 11246999
Q ss_pred CcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc
Q 009902 70 STINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL 149 (523)
Q Consensus 70 ~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (523)
+++||++++++||+.|..+..+++|||+||++||++||+||||+|+|||+.. ++.+ |.+..+..||..++.+.+.
T Consensus 206 ~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~--~~~~---f~~~~~~~~~~~~~~g~~~ 280 (605)
T TIGR02104 206 DPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSR--EESP---FEKTVPGYYYRYNEDGTLS 280 (605)
T ss_pred CCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCC--CCCc---ccCCCCCeeEEECCCCCcc
Confidence 9999999999999988888888999999999999999999999999999853 2222 3333333444557777778
Q ss_pred ccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHh--cccccCCeEecccC
Q 009902 150 NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK--DAILSRCKIIAEPW 227 (523)
Q Consensus 150 ~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~E~~ 227 (523)
++++|+.++|+.+|+||++|++++++|++++||||||+|++.++..+ +++++.. +...|+++++||.|
T Consensus 281 ~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~----------~~~~~~~~~~~~~p~~~ligE~w 350 (605)
T TIGR02104 281 NGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIE----------TMNEIRKALNKIDPNILLYGEGW 350 (605)
T ss_pred CCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHH----------HHHHHHHHHHhhCCCeEEEEccC
Confidence 88889999999999999999999999999999999999999888543 3444443 34679999999999
Q ss_pred CCCcCcccC------CCCCcccchhhhhHHHHHHHH---------HHcCCCCcHHHHHHHhhCCcccc--ccCCCCCCcc
Q 009902 228 DCRGLYLVG------KFPNWDRWAEWNGKYRDDLRK---------FIKGDPGMKGILATRISGSSDLY--RVNKRKPYHS 290 (523)
Q Consensus 228 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ 290 (523)
......... ....+...+.||+.|++.++. |+.|..+....+...+.+..... ......|..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~ 430 (605)
T TIGR02104 351 DLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQS 430 (605)
T ss_pred CCCCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhhe
Confidence 876322211 111223468899999999983 44444444556666666544333 1234467889
Q ss_pred EEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecc
Q 009902 291 INFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMG 370 (523)
Q Consensus 291 ~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G 370 (523)
+||++|||+.|+.+.+.+..+. . . ...+.++++++++++||+||+||||||
T Consensus 431 vnyl~~HD~~~l~d~l~~~~~~-------------------------~-~---~~~~~~r~rla~alllts~GiP~iy~G 481 (605)
T TIGR02104 431 INYVECHDNHTLWDKLSLANPD-------------------------E-T---EEQLKKRQKLATAILLLSQGIPFLHAG 481 (605)
T ss_pred EEEEEecCCCCHHHHHHhhCCC-------------------------C-C---HHHHHHHHHHHHHHHHHcCCCceeecc
Confidence 9999999999998877643210 0 0 123567899999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCccccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCcCc-eeeeccccCCCCCcEEE
Q 009902 371 DEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNIND-VTWHEDNWDNYDSKFLA 449 (523)
Q Consensus 371 ~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~-~~~~~~~~~~~~~~v~a 449 (523)
||+|+++.++.+.|++++++++|+|+..+. ...+++++|+||+|||++|+|+.++...+.. +.+. ...++.|++
T Consensus 482 dE~g~s~~g~~n~y~~~d~~~~ldW~~~~~-~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~----~~~~~~vla 556 (605)
T TIGR02104 482 QEFMRTKQGDENSYNSPDSINQLDWDRKAT-FKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFL----PAEPSGVIA 556 (605)
T ss_pred hhhhccCCCCCCCccCCCcccccCcccccc-chHHHHHHHHHHHHHhhCccccCCChhhhcceeEEc----cCCCCcEEE
Confidence 999999988889999999999999987543 3579999999999999999999988654321 1222 123578999
Q ss_pred EEEecCCC----CeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCC
Q 009902 450 FTLHDNNG----ADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLE 493 (523)
Q Consensus 450 f~R~~~~~----~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~ 493 (523)
|.|....+ +.++|++|+++.++++.||. .+.|+.++++...
T Consensus 557 ~~r~~~~~~~~~~~llVv~N~s~~~~~v~lp~---~~~w~~~~~~~~~ 601 (605)
T TIGR02104 557 YRLKDHANGDPWKDIIVIHNANPEPVDIQLPS---DGTWNVVVDNKNA 601 (605)
T ss_pred EEEeCCcCCCCcCeEEEEEeCCCCCeEEECCC---CCCEEEEECCCcC
Confidence 99976422 47999999999999999985 3689999988654
No 7
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=4.1e-69 Score=564.43 Aligned_cols=427 Identities=19% Similarity=0.264 Sum_probs=304.8
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
|+||+|.+++++|. |||+||+++||||++|||++|||+||+++ + ...+||++.||++|||+
T Consensus 10 i~~~~f~~~~~~~~-----G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~----------~----~~~~gY~~~d~~~id~~ 70 (543)
T TIGR02403 10 IYPKSFYDSTGDGT-----GDLRGIIEKLDYLKKLGVDYIWLNPFYVS----------P----QKDNGYDVSDYYAINPL 70 (543)
T ss_pred EEhHHHhcCCCCCc-----cCHHHHHHhHHHHHHcCCCEEEECCcccC----------C----CCCCCCCccccCccCcc
Confidence 58999999999998 99999999999999999999999999997 2 13469999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCC--CCcCeeeCC-CC----Cc-----
Q 009902 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGID--NKVYYMVDG-TG----QL----- 148 (523)
Q Consensus 81 ~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~----~~----- 148 (523)
|||. ++|++||++||++||+||||+|+|||+. +|+|++.....+ .++||.|.+ .+ .+
T Consensus 71 ~Gt~--------~~~~~lv~~ah~~gi~vilD~v~NH~~~---~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~ 139 (543)
T TIGR02403 71 FGTM--------ADFEELVSEAKKRNIKIMLDMVFNHTST---EHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFG 139 (543)
T ss_pred cCCH--------HHHHHHHHHHHHCCCEEEEEECcccccc---chHHHHHhhcCCCcccCceEecCCCCCCCCcccccCC
Confidence 9998 9999999999999999999999999999 999997654222 257777742 11 11
Q ss_pred ---------------cccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCC------------
Q 009902 149 ---------------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP------------ 201 (523)
Q Consensus 149 ---------------~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~------------ 201 (523)
..|...+||||++||+|+++|.+++++|+ ++||||||||+|++|.++.....
T Consensus 140 ~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~ 218 (543)
T TIGR02403 140 GSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTD 218 (543)
T ss_pred CcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCC
Confidence 11233589999999999999999999999 68999999999999975421110
Q ss_pred -CCChHHHHHHHhcc-cccCCeEecccCCCCcC----cccCCCCCcccchhhhhHHHHHHHHHHcCCC-----CcHHHHH
Q 009902 202 -LNAPPLIRAIAKDA-ILSRCKIIAEPWDCRGL----YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDP-----GMKGILA 270 (523)
Q Consensus 202 -~~~~~~~~~~~~~~-~~~~~~~i~E~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 270 (523)
.....+++++++.. ..+++++|||.|..... |.... .....+.||+. .....+..+.. .....+.
T Consensus 219 ~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~--~~~~d~~~nf~--~~~~~~~~~~~~~~~~~~~~~l~ 294 (543)
T TIGR02403 219 GPRVHEYLQEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPE--NKELSMVFTFH--HLKVDYPNGEKWTLAKFDFAKLK 294 (543)
T ss_pred ChHHHHHHHHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCC--CCeeCeEEChh--hhhchhccccccccCCCCHHHHH
Confidence 11234677765421 16789999999964321 21110 00112444443 33333333221 1122232
Q ss_pred HHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 009902 271 TRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQ 350 (523)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 350 (523)
..+....... ........+|++|||+.|+...++.. ...+.+.
T Consensus 295 ~~~~~~~~~~---~~~~~~~~~fl~NHD~~R~~s~~g~~----------------------------------~~~~~~~ 337 (543)
T TIGR02403 295 EIFSTWQTGM---QAGGGWNALFWNNHDQPRAVSRFGDD----------------------------------GEYRVES 337 (543)
T ss_pred HHHHHHHHhc---cccCcceeeecCCCChhhHHHhcCCc----------------------------------hhhHHHH
Confidence 2222111000 00123446799999999875544210 0012346
Q ss_pred HHHHHHHHHHcCCeeeeecccccccccCCCC-------------------------------CCCCCCCCCCccccCccc
Q 009902 351 MKNFHLALMVSQGTPMMLMGDEYGHTRYGNN-------------------------------NSYGHDTAINNFQWGQLE 399 (523)
Q Consensus 351 ~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~-------------------------------~~~~~~~~r~~~~W~~~~ 399 (523)
++++++++||+||+||||||||+||.+.... +...++.+|.||+|+...
T Consensus 338 ~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~ 417 (543)
T TIGR02403 338 AKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEK 417 (543)
T ss_pred HHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCC
Confidence 7888899999999999999999999874210 113456789999998742
Q ss_pred --------------------------cccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEe
Q 009902 400 --------------------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLH 453 (523)
Q Consensus 400 --------------------------~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~ 453 (523)
..+.|++++||+||+|||++|+|+.|++..+. ..++.|++|.|.
T Consensus 418 ~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~----------~~~~~v~a~~R~ 487 (543)
T TIGR02403 418 NAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLL----------PDDPSVWAYTRT 487 (543)
T ss_pred CCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEee----------cCCCcEEEEEEE
Confidence 12578999999999999999999999876541 234579999998
Q ss_pred cCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEEe
Q 009902 454 DNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 454 ~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~ 522 (523)
.+ +++++||+|++++++++.||... ..+..++.+.... . ....++|+||+++|+.+
T Consensus 488 ~~-~~~~lVv~N~s~~~~~~~l~~~~--~~~~~~~~~~~~~--~--------~~~~~~L~p~~~~i~~~ 543 (543)
T TIGR02403 488 YK-NQKLLVINNFYGEEKTIELPLDL--LSGKILLSNYEEA--E--------KDAKLELKPYEAIVLLI 543 (543)
T ss_pred cC-CcEEEEEEECCCCCeEeeCCccC--cCceEEEecCCCc--C--------CCCcEEECCceEEEEeC
Confidence 87 79999999999999999998654 3345555442211 0 12689999999999864
No 8
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=9.9e-69 Score=566.93 Aligned_cols=369 Identities=20% Similarity=0.312 Sum_probs=285.2
Q ss_pred CCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 17 EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 17 ~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
.+||||+||++||||||+||||+|||+||+++ ..+|||++.||++|||+|||+ ++|+
T Consensus 173 f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s---------------~s~hgYd~~Dy~~iDp~~Gt~--------~df~ 229 (598)
T PRK10785 173 FYGGDLDGISEKLPYLKKLGVTALYLNPIFTA---------------PSVHKYDTEDYRHVDPQLGGD--------AALL 229 (598)
T ss_pred ccCcCHHHHHHHHHHHHHcCCCEEEeCCcccC---------------CCCCCcCcccccccCcccCCH--------HHHH
Confidence 46999999999999999999999999999997 257899999999999999998 9999
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCC----------CCCcCeeeCCCCCccccCC--cCCcCCCCCHH
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI----------DNKVYYMVDGTGQLLNYAG--CGNTLNCNHPV 164 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~dln~~~p~ 164 (523)
+||++||++|||||||+|+|||+. +|+||...... ...+||.+.+.+.+..|.+ .+|+||++||+
T Consensus 230 ~Lv~~aH~rGikVilD~V~NH~~~---~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~ 306 (598)
T PRK10785 230 RLRHATQQRGMRLVLDGVFNHTGD---SHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEE 306 (598)
T ss_pred HHHHHHHHCCCEEEEEECCCcCCC---CCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHH
Confidence 999999999999999999999999 89998654311 1256888876665555554 48999999999
Q ss_pred HHHHHHH----HHHHHHHh-ccccEEEEccccccccCCCCCCCCChHHHHHHHhc--ccccCCeEecccCCCCcCcccCC
Q 009902 165 VMELILD----SLRHWVVE-YHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVGK 237 (523)
Q Consensus 165 v~~~i~~----~~~~w~~~-~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~E~~~~~~~~~~~~ 237 (523)
|+++|++ ++++|+++ +||||||||+|+++++. +.......+++++++. ...|++++|||.|.....++.++
T Consensus 307 v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~--~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~ 384 (598)
T PRK10785 307 VVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEG--GGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQAD 384 (598)
T ss_pred HHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccc--cCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCc
Confidence 9999995 89999975 89999999999998753 2223344566666552 45799999999998664454443
Q ss_pred CCCcccchhhhh-HHHHHHHHHHcCCC-------CcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhc
Q 009902 238 FPNWDRWAEWNG-KYRDDLRKFIKGDP-------GMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYN 309 (523)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~ 309 (523)
.. .+.+|+ .|...++.++.+.. .....+...+......+. .......+||++|||+.|+...+..
T Consensus 385 ~~----d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~n~l~nHD~~R~~~~~~~- 457 (598)
T PRK10785 385 VE----DAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLP--HQQQLRQFNQLDSHDTARFKTLLGG- 457 (598)
T ss_pred cc----cccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCC--HHHHHHhhhccCCCccchhhhhhCC-
Confidence 21 256665 57777777775432 122333333332111111 0011245799999999987554320
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCCCCCCC
Q 009902 310 YKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTA 389 (523)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~ 389 (523)
...++++|++++||+||+||||||||+||.+. .++..
T Consensus 458 -------------------------------------~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~------~dp~~ 494 (598)
T PRK10785 458 -------------------------------------DKARMPLALVWLFTWPGVPCIYYGDEVGLDGG------NDPFC 494 (598)
T ss_pred -------------------------------------CHHHHHHHHHHHHhCCCCcEEEeeeeccccCC------CCCCc
Confidence 13478999999999999999999999999874 23456
Q ss_pred CCccccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCC
Q 009902 390 INNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDF 469 (523)
Q Consensus 390 r~~~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~s~~ 469 (523)
|.+|+|+... .+.+++++||+|++|||++|+|+.|++..+ ..++++++|.|... ++.++||+|++ .
T Consensus 495 R~~m~W~~~~-~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l-----------~~~~~v~af~R~~~-~~~vlVviN~s-~ 560 (598)
T PRK10785 495 RKPFPWDEAK-QDGALLALYQRMIALRKKSQALRRGGCQVL-----------YAEGNVVVFARVLQ-QQRVLVAINRG-E 560 (598)
T ss_pred cCCcCCCccc-CchHHHHHHHHHHHHHhhCcccccCcEEEE-----------EeCCCEEEEEEECC-CCEEEEEEECC-C
Confidence 8999998753 245899999999999999999999987655 24568999999886 89999999999 6
Q ss_pred cEEEEcCC
Q 009902 470 FVKVSLPP 477 (523)
Q Consensus 470 ~~~~~l~~ 477 (523)
.+++.||.
T Consensus 561 ~~~v~lp~ 568 (598)
T PRK10785 561 ACEVVLPA 568 (598)
T ss_pred CeEEeccc
Confidence 78888875
No 9
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=5.3e-68 Score=557.58 Aligned_cols=452 Identities=21% Similarity=0.325 Sum_probs=307.6
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
|+|++|.+++++|. |||+||+++||||++||||+|||+||+++ + ..+|||++.||++|||+
T Consensus 11 i~~~~f~d~~~~~~-----Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~----------~----~~~~gY~~~dy~~vd~~ 71 (539)
T TIGR02456 11 VHVRSFFDSNGDGI-----GDFPGLTSKLDYLKWLGVDALWLLPFFQS----------P----LRDDGYDVSDYRAILPE 71 (539)
T ss_pred EehhHhhcCCCCCc-----cCHHHHHHhHHHHHHCCCCEEEECCCcCC----------C----CCCCCCCcccccccChh
Confidence 58999999999887 99999999999999999999999999987 2 14689999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCC---CCCcCeeeCCCC-Cc--------
Q 009902 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI---DNKVYYMVDGTG-QL-------- 148 (523)
Q Consensus 81 ~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~-------- 148 (523)
|||+ +||++||++||++||+||||+|+||++. +|+|++..... ..++||.+.+.+ .+
T Consensus 72 ~Gt~--------~df~~Lv~~ah~~Gi~vilD~V~NH~s~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (539)
T TIGR02456 72 FGTI--------DDFKDFVDEAHARGMRVIIDLVLNHTSD---QHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFV 140 (539)
T ss_pred hCCH--------HHHHHHHHHHHHCCCEEEEEeccCcCCC---CCHHHHHHhhCCCCCCCceEEecCCCccccccccccc
Confidence 9998 9999999999999999999999999999 99999754322 125777763211 00
Q ss_pred ------------------cccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCC----ChH
Q 009902 149 ------------------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLN----APP 206 (523)
Q Consensus 149 ------------------~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~----~~~ 206 (523)
..|..++|+||++||+||++|++++++|+ ++||||||||+++++.+.. +..+. ..+
T Consensus 141 ~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~-~~~~~~~p~~~~ 218 (539)
T TIGR02456 141 DTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYERE-GTSCENLPETHE 218 (539)
T ss_pred ccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccC-CCccCCCchHHH
Confidence 11334689999999999999999999999 6999999999999996653 22222 234
Q ss_pred HHHHHHhc--ccccCCeEecccCCCCc---CcccCCCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccc
Q 009902 207 LIRAIAKD--AILSRCKIIAEPWDCRG---LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYR 281 (523)
Q Consensus 207 ~~~~~~~~--~~~~~~~~i~E~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 281 (523)
+++++++. ...|+++++||.+.... .|. +..........+++++...+...+.. .....+...+....
T Consensus 219 f~~~~~~~v~~~~p~~~~iaE~~~~~~~~~~y~-~~~~~~~~d~~f~f~l~~~~~~~l~~--~~~~~l~~~l~~~~---- 291 (539)
T TIGR02456 219 FLKRLRKMVDREYPGRMLLAEANQWPEEVVAYF-GDEGDPECHMAFNFPVMPRIFMALRR--EDRSPIIDILKETP---- 291 (539)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCCHHHHHHhh-CCCCCCeeeeEEChhhhhhhhccccc--CCHHHHHHHHHHhh----
Confidence 66666552 34689999999753221 121 11111012356777765544332221 11222333222111
Q ss_pred cCCCCCCccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH--HHHHHHHHHHHHH
Q 009902 282 VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKAL--RSRQMKNFHLALM 359 (523)
Q Consensus 282 ~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~ 359 (523)
....+....+|++|||+.++..+.......-.+.- .+. ....-+.+ ...|..... ..+++++|++++|
T Consensus 292 -~~~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~----~~~R~~s~~~~~~~~~kla~~~l~ 361 (539)
T TIGR02456 292 -DIPDSCQWCIFLRNHDELTLEMVTDEERDFMYAAY---APD--PRMRINLG----IRRRLAPLLDNDRRRIELLTALLL 361 (539)
T ss_pred -hccCCCceeeecCCCCccCccccChhhhhhhhhhc---cCC--cchhcccc----hhhhhhhcccccHHHHHHHHHHHH
Confidence 11123456789999999774321110000000000 000 00000000 001111111 1347899999999
Q ss_pred HcCCeeeeecccccccccCCCCCCCCCCCCCCccccCccc---------------------------------cccchHH
Q 009902 360 VSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE---------------------------------TKKNSHY 406 (523)
Q Consensus 360 ~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~---------------------------------~~~~~~~ 406 (523)
|+||+|+||||+|+||.+... ...++..|.+|+|+... ..+.+++
T Consensus 362 tlpG~P~IYYG~EiGm~~~~~--~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll 439 (539)
T TIGR02456 362 SLPGSPILYYGDEIGMGDNIW--LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLL 439 (539)
T ss_pred hCCCceEEEechhhcCcCCCc--cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHH
Confidence 999999999999999975311 11334568899998631 1346799
Q ss_pred HHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCC-CCCeE
Q 009902 407 RFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPP-KRQWF 485 (523)
Q Consensus 407 ~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~~~-~~~~~ 485 (523)
++||+||+|||++|+|+.|++..+. ..+++|++|.|..+ +++++||+|++++++++.|+.... +..+.
T Consensus 440 ~~yr~Li~lRk~~~aL~~G~~~~l~----------~~~~~v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~ 508 (539)
T TIGR02456 440 HWTRRVLHVRKAHPAFGRGSLTFLP----------TGNRRVLAFLREYE-GERVLCVFNFSRNPQAVELDLSEFAGRVPV 508 (539)
T ss_pred HHHHHHHHHHhcCcccccCceEEEe----------cCCCCEEEEEEEcC-CcEEEEEEeCCCCCEEeeccccccccCcce
Confidence 9999999999999999999877551 23567999999988 899999999999999999876432 22455
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEE
Q 009902 486 RVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 521 (523)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~ 521 (523)
+++....... ....+.+|+|+|++++||+
T Consensus 509 dl~~~~~~~~-------~~~~~~~~~l~p~~~~~~~ 537 (539)
T TIGR02456 509 ELIGGAPFPP-------VGGDGYLLTLGPHGFYWFR 537 (539)
T ss_pred ecccCCcccc-------ccCCcceEEECCceEEEEE
Confidence 5654432110 0112358999999999997
No 10
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.3e-65 Score=559.29 Aligned_cols=479 Identities=25% Similarity=0.394 Sum_probs=344.4
Q ss_pred CcccCCCCCCCCCCCC-CCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhh---cCCC--CCCCCCccCCCcCcC
Q 009902 1 MNVRAFTGDESSGLDP-EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQR---RRNP--RDHMVNTWGYSTINF 74 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~-~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~---~~~~--~~~~~~~~gY~~~d~ 74 (523)
||||+|+.....+... ...|+|+||+++|||||+||||+||||||+++....+.. .... ......+|||++.+|
T Consensus 457 lHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~y 536 (1111)
T TIGR02102 457 AHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNY 536 (1111)
T ss_pred EechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcC
Confidence 6999999544434322 246999999999999999999999999999752211100 0000 000124699999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeee-CCCCCccccCC
Q 009902 75 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV-DGTGQLLNYAG 153 (523)
Q Consensus 75 ~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (523)
++++++||++|.+|..|++|||+||++||++||+||||||+|||+. .+++ .+.. +.||++ +.++...+. .
T Consensus 537 fape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~---~~~f----~~~~-p~Yy~~~~~~G~~~~~-~ 607 (1111)
T TIGR02102 537 FALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAK---VYIF----EDLE-PNYYHFMDADGTPRTS-F 607 (1111)
T ss_pred cccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccc---cccc----cccC-CCceEeeCCCCCcccc-c
Confidence 9999999999889999999999999999999999999999999998 5542 2333 345555 444443332 2
Q ss_pred cCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCC---
Q 009902 154 CGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR--- 230 (523)
Q Consensus 154 ~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~--- 230 (523)
|+.+++.++|+||++|++++++|+++|||||||||+++++.... +.....++. +..|+++|+||.|...
T Consensus 608 ~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~------~~~~~~~l~--~~dP~~~liGE~W~~~~g~ 679 (1111)
T TIGR02102 608 GGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAAS------IEIAYKEAK--AINPNIIMIGEGWRTYAGD 679 (1111)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHH------HHHHHHHHH--HhCcCEEEEEecccccCCC
Confidence 36789999999999999999999999999999999998764332 112222222 3578999999999862
Q ss_pred cCcccCCCCC-c----ccchhhhhHHHHHHHH---------HHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEec
Q 009902 231 GLYLVGKFPN-W----DRWAEWNGKYRDDLRK---------FIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIA 296 (523)
Q Consensus 231 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~n 296 (523)
..+....+.. + ...+.|++.+++.++. |+.|.......+...+.+....+. ...|..++||++|
T Consensus 680 ~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~--~~~P~~~VnYV~a 757 (1111)
T TIGR02102 680 EGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFE--ADSPGDVVQYIAA 757 (1111)
T ss_pred CcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccc--cCCcccEEEEEec
Confidence 1222222111 0 1235566666666652 222333334455555555443321 3477899999999
Q ss_pred cCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccc
Q 009902 297 HDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHT 376 (523)
Q Consensus 297 HD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~ 376 (523)
||++++.+++.+..+++..+++. + ....++.|++.+++||++||||||+|||++.+
T Consensus 758 HDn~TL~D~l~~~~~~~~~~~e~--------------------~----~~~~~r~rla~~llllSQGiPfi~aGqEf~RT 813 (1111)
T TIGR02102 758 HDNLTLHDVIAQSIKKDPKVAEN--------------------Q----EEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRT 813 (1111)
T ss_pred CCCCchHhhhhhccccCcccccc--------------------h----HHHHHHHHHHHHHHHHhCcHhhhhcchhhhcc
Confidence 99999999998877766554431 0 11245778899999999999999999999999
Q ss_pred cCCC----------------------------------CCCCCCCCCCCccccCcccccc-----chHHHHHHHHHHHHh
Q 009902 377 RYGN----------------------------------NNSYGHDTAINNFQWGQLETKK-----NSHYRFFSEVIKFRQ 417 (523)
Q Consensus 377 ~~~~----------------------------------~~~~~~~~~r~~~~W~~~~~~~-----~~~~~~~~~L~~lRk 417 (523)
+.++ .++|+++++.+.++|+..+... ..+++++|.||+|||
T Consensus 814 K~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk 893 (1111)
T TIGR02102 814 KQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRR 893 (1111)
T ss_pred cCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHh
Confidence 9887 5677778999999999875431 479999999999999
Q ss_pred cCcCcCccCcCCcC-ceeeeccc----cCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCC-CCCCCeEEEEeCC
Q 009902 418 SRRVFGREDFLNIN-DVTWHEDN----WDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP-PPKRQWFRVVDTN 491 (523)
Q Consensus 418 ~~paL~~g~~~~~~-~~~~~~~~----~~~~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~-~~~~~~~~~~~~~ 491 (523)
++|+|+.++...+. ++.|+... | ...+.+++|......++.++|++|.+..++++.||.. +....|..+++..
T Consensus 894 ~~~~fr~~~~~~i~~~v~~~~~~g~~~~-~~~~~~ia~~~~~~~~~~~~V~~Na~~~~~~~~lp~~~~~~~~~~v~~~~~ 972 (1111)
T TIGR02102 894 STDAFRLGSKALVDRKVTLITIPGQNEI-EEEDLVVAYQIVATNGDIYAVFVNADDKARTLTLGEDYAHLTVGEVVVDAE 972 (1111)
T ss_pred cCccccccchhhhcCcEEEECCCCCccc-ccCCcEEEEEEecCCCCeEEEEECCCCCCEEEECCCCcccccceEEEEccc
Confidence 99999999876543 47787432 3 2347899999876645789999999999999999873 2235788888775
Q ss_pred CCCCCCCC-CCCCCCCCCeEEEcCCEEEEEEeC
Q 009902 492 LESPDDIV-PEGAAGTGSTYNLSPYSSILLEAK 523 (523)
Q Consensus 492 ~~~~~~~~-~~~~~~~~~~i~l~p~~~~vl~~~ 523 (523)
......+. ..+.......|+|+|.+++||+.+
T Consensus 973 ~~g~~~~~~~~~~~~~~~~~~v~~~s~~V~~~~ 1005 (1111)
T TIGR02102 973 QAGVTGIAEPKGVELTAEGLKLDPLTAAVVRVG 1005 (1111)
T ss_pred ccCcccccccccccccCCeEEEcCcEEEEEEec
Confidence 44322222 112223356899999999999853
No 11
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.4e-62 Score=519.35 Aligned_cols=442 Identities=21% Similarity=0.317 Sum_probs=299.1
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcc-hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~L-dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
||||||++++.++. |+|+|++++| ||||+||||+||||||+++ +. ..+|||+++||++|+|
T Consensus 153 ~hv~~f~~~~~~~~-----g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~--------~~-----~~~~GY~~~~y~~i~~ 214 (633)
T PRK12313 153 VHLGSWKRNEDGRP-----LSYRELADELIPYVKEMGYTHVEFMPLMEH--------PL-----DGSWGYQLTGYFAPTS 214 (633)
T ss_pred EehhccccCCCCCc-----cCHHHHHHHHHHHHHHcCCCEEEeCchhcC--------CC-----CCCCCCCCcCcCcCCC
Confidence 69999999877776 9999999995 9999999999999999998 22 3689999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCC
Q 009902 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLN 159 (523)
Q Consensus 80 ~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 159 (523)
+|||. +|||+||++||++||+||||+|+||++. ++..+..+++. +.|+..++...+...++ .++||
T Consensus 215 ~~Gt~--------~d~k~lv~~~H~~Gi~VilD~V~nH~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~w~-~~~~n 280 (633)
T PRK12313 215 RYGTP--------EDFMYLVDALHQNGIGVILDWVPGHFPK---DDDGLAYFDGT--PLYEYQDPRRAENPDWG-ALNFD 280 (633)
T ss_pred CCCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC---CcccccccCCC--cceeecCCCCCcCCCCC-CcccC
Confidence 99998 9999999999999999999999999998 44444344332 22322233222222222 46899
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEcccccc-ccCC--CCCC----------CCChHHHHHHHh--cccccCCeEec
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGT--DGSP----------LNAPPLIRAIAK--DAILSRCKIIA 224 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~-~~~~--~~~~----------~~~~~~~~~~~~--~~~~~~~~~i~ 224 (523)
++||+||++|++++++|+++|||||||+|++.++ ..+. .+.| .+...+++++++ ....|++++||
T Consensus 281 ~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 360 (633)
T PRK12313 281 LGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIA 360 (633)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9999999999999999999999999999988654 3221 1111 123467777765 24579999999
Q ss_pred ccCCCCcCcccCCC-CCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchh
Q 009902 225 EPWDCRGLYLVGKF-PNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLY 303 (523)
Q Consensus 225 E~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~ 303 (523)
|.+..........+ ....+...|+..+...+..++.............+.... .+ ... ...+++.|||+....
T Consensus 361 E~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~---e~~~l~~sHD~~~~g 434 (633)
T PRK12313 361 EESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSF-MY--AFS---ENFVLPFSHDEVVHG 434 (633)
T ss_pred ECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHH-hh--hhh---cccccCCCCcccccC
Confidence 98643322211111 122345889999998888887644321110000000000 00 000 112456799985321
Q ss_pred h--hhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCC
Q 009902 304 D--LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN 381 (523)
Q Consensus 304 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~ 381 (523)
. +... . .| ++ .....++|++++++||+||+||||||+|+|+.+...
T Consensus 435 ~~~~~~~------~-------------------~g---~~---~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~- 482 (633)
T PRK12313 435 KKSLMHK------M-------------------PG---DR---WQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWK- 482 (633)
T ss_pred CccHHHh------c-------------------CC---CH---HHHHHHHHHHHHHHHhCCCCcEeecccccccCccCC-
Confidence 1 1100 0 01 00 012457889999999999999999999999976432
Q ss_pred CCCCCCCCCCccccCcccc-ccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEec-CCCCe
Q 009902 382 NSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHD-NNGAD 459 (523)
Q Consensus 382 ~~~~~~~~r~~~~W~~~~~-~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~-~~~~~ 459 (523)
...+|+|+.... ....++++||+|++||+++|+|+.+++.. ..+.|...+ +.+++|+||.|.. .+++.
T Consensus 483 -------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~-~~~~~l~~~--~~~~~vlaf~R~~~~~~~~ 552 (633)
T PRK12313 483 -------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSP-DGFEWIDAD--DADQSVLSFIRKGKNKGDF 552 (633)
T ss_pred -------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhcccCCC-CCcEEEECc--CCCCCEEEEEEeCCCCCce
Confidence 246799987442 34589999999999999999999876522 234454321 2356899999987 22788
Q ss_pred EEEEEeCCCCcEE-EEcCCCCCCCCeEEEEeCCCCC-CCCCCCC---------CC--CCCCCeEEEcCCEEEEEEeC
Q 009902 460 IYLAFNAHDFFVK-VSLPPPPPKRQWFRVVDTNLES-PDDIVPE---------GA--AGTGSTYNLSPYSSILLEAK 523 (523)
Q Consensus 460 ~lvv~N~s~~~~~-~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~--~~~~~~i~l~p~~~~vl~~~ 523 (523)
++||+|+++.+.. +.|+.. .+++|++++++.... ....... .. ......|.|||++++||+.+
T Consensus 553 llvv~N~s~~~~~~y~i~~p-~~g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~ 628 (633)
T PRK12313 553 LVVVFNFTPVEREDYRIGVP-VAGIYEEILNTDSEEFGGSGKGNNGTVKAQEGPWHGRPQSLTLTLPPLGALVLKPK 628 (633)
T ss_pred EEEEEeCCCCcccceeECCC-CCCeEEEEEcCCchhcCCCCcCCCCceeecccccCCCCCEEEEEeCCCEEEEEEEc
Confidence 9999999976543 333322 258999999987653 1110000 00 01124689999999999874
No 12
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=4.1e-62 Score=513.98 Aligned_cols=372 Identities=16% Similarity=0.190 Sum_probs=252.2
Q ss_pred CCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhh-hcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHH
Q 009902 16 PEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQ-RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWE 94 (523)
Q Consensus 16 ~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~-~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~d 94 (523)
..+||||+||++|||||++||||+|||+||+++.+.... +..+. ...+.+|||++.||+.|||+|||+ +|
T Consensus 223 ~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~-~~~~~yhgY~~~D~~~id~~~Gt~--------~d 293 (683)
T PRK09505 223 TFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGD-FPHYAYHGYYTLDWTKLDANMGTE--------AD 293 (683)
T ss_pred cccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccC-CCcCCCCCCCccccccCCCCCCCH--------HH
Confidence 357899999999999999999999999999997432110 00000 012578999999999999999998 99
Q ss_pred HHHHHHHHHHCCCEEEEeeccccccCCC---CCCCccccc-------CCCCCCcCeeeCC-----------------CCC
Q 009902 95 FKEMVKALHGAGIEVILDVVYNHTNEAD---DANPYTTSF-------RGIDNKVYYMVDG-----------------TGQ 147 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V~nH~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~-----------------~~~ 147 (523)
|++||++||++||+||||+|+||++... ..+.||... ....+..|+.|.+ ...
T Consensus 294 fk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 373 (683)
T PRK09505 294 LRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTA 373 (683)
T ss_pred HHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccccccccccccccCCccc
Confidence 9999999999999999999999999521 111122211 0001122222210 011
Q ss_pred ccccC------------------------CcCCcCCCC-----------------------CHHHHHHHHHHHHHHHHhc
Q 009902 148 LLNYA------------------------GCGNTLNCN-----------------------HPVVMELILDSLRHWVVEY 180 (523)
Q Consensus 148 ~~~~~------------------------~~~~dln~~-----------------------~p~v~~~i~~~~~~w~~~~ 180 (523)
+..++ ..+||||++ ||+|+++|++++++|++++
T Consensus 374 ~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~ 453 (683)
T PRK09505 374 WDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDY 453 (683)
T ss_pred cccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhc
Confidence 11111 125666665 5699999999999999889
Q ss_pred cccEEEEccccccccCCCCCCCCChHHHHH----HHh---cc--cccCCeEecccCCCCc---CcccCCCCCcccchhhh
Q 009902 181 HVDGFRFDLASVLCRGTDGSPLNAPPLIRA----IAK---DA--ILSRCKIIAEPWDCRG---LYLVGKFPNWDRWAEWN 248 (523)
Q Consensus 181 gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~----~~~---~~--~~~~~~~i~E~~~~~~---~~~~~~~~~~~~~~~~~ 248 (523)
||||||+|+|++|+.++ |......+++ .++ +. ..++++|+||+|.... .+.... +.+.+|
T Consensus 454 GIDGfRlDaakhV~~~F---W~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~~y~~~~-----fDsv~N 525 (683)
T PRK09505 454 GIDGFRVDTAKHVELPA---WQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKSDYYRHG-----FDAMIN 525 (683)
T ss_pred CCCEEEEechHhCCHHH---HHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhhHHHHhhc-----CccccC
Confidence 99999999999997654 3322222221 111 10 1235899999997542 222222 337888
Q ss_pred hHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCC
Q 009902 249 GKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNF 328 (523)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (523)
++|+..+....... ..+........... .....++|++|||+.|+.....
T Consensus 526 F~~~~~~~~~~~~~----~~l~~~~~~~~~~~-----~~~~~l~FLdNHDt~Rf~s~~~--------------------- 575 (683)
T PRK09505 526 FDYQEQAAKAVDCL----AQMDPTYQQMAEKL-----QDFNVLSYLSSHDTRLFFEGGQ--------------------- 575 (683)
T ss_pred chHHHHHHHHHHHH----HHHHHHHHHHhhhc-----CccceeecccCCChhhhhhhcC---------------------
Confidence 88877655433211 11111111000000 1235678999999988744321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCCCCCCCCCccccCccccccchHHHH
Q 009902 329 SWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRF 408 (523)
Q Consensus 329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~~~~~ 408 (523)
...++++|++++||+||+|+||||||+||.+.... .....+.|.+|+|+.......+++++
T Consensus 576 ------------------~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g-~DP~~~~R~~M~W~~~~~~~~~Ll~~ 636 (683)
T PRK09505 576 ------------------SYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTG-SDPLQGTRSDMNWQEVSGKSAALLAH 636 (683)
T ss_pred ------------------chHHHHHHHHHHHhCCCCcEEEechhhCccCCCCC-CCCcccccccCCccccccchHHHHHH
Confidence 01367889999999999999999999999763211 01112478999998755455689999
Q ss_pred HHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeC
Q 009902 409 FSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 466 (523)
Q Consensus 409 ~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~ 466 (523)
||+|++||+++|+|+.|++..+ ..+++++|.|..+ +++++||+|-
T Consensus 637 ~kkLi~LRk~~pAL~~G~~~~l------------~~~~~~aF~R~~~-~d~vlVv~~~ 681 (683)
T PRK09505 637 WQKLGQFRARHPAIGAGKQTTL------------SLKQYYAFVREHG-DDKVMVVWAG 681 (683)
T ss_pred HHHHHHHHhhCHHhhCCceEEe------------ccCCEEEEEEEeC-CCEEEEEEeC
Confidence 9999999999999999987654 2468999999987 8899999984
No 13
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=9.5e-61 Score=503.66 Aligned_cols=439 Identities=20% Similarity=0.316 Sum_probs=305.0
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcc-hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~L-dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
|||+||+..+...+ |+|++++++| +|||+||||+|+||||+++ +. ..+|||++++|++|++
T Consensus 150 ~Hvg~f~~~~~g~~-----~ty~~~~~~l~~ylk~lG~t~velmPv~e~--------~~-----~~~wGY~~~~~~~~~~ 211 (639)
T PRK14706 150 VHVGSWARRDDGWF-----LNYRELAHRLGEYVTYMGYTHVELLGVMEH--------PF-----DGSWGYQVTGYYAPTS 211 (639)
T ss_pred EehhhcccCCCCCc-----cCHHHHHHHHHHHHHHcCCCEEEccchhcC--------CC-----CCCCCcCccccccccc
Confidence 69999987643334 8999999997 9999999999999999997 22 3689999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCc-cccCCcCCcC
Q 009902 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL-LNYAGCGNTL 158 (523)
Q Consensus 80 ~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dl 158 (523)
+|||. +|||+||++||++||+||||+|+||++. ++.++..+++. +.|+..++...+ .++. . ..+
T Consensus 212 ~~g~~--------~~~~~lv~~~H~~gi~VilD~v~nH~~~---~~~~l~~~dg~--~~y~~~~~~~g~~~~w~-~-~~~ 276 (639)
T PRK14706 212 RLGTP--------EDFKYLVNHLHGLGIGVILDWVPGHFPT---DESGLAHFDGG--PLYEYADPRKGYHYDWN-T-YIF 276 (639)
T ss_pred ccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCc---chhhhhccCCC--cceeccCCcCCcCCCCC-C-ccc
Confidence 99997 9999999999999999999999999998 55455444432 233333333222 2332 2 248
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccEEEEcccccc-ccCCC-C----------CCCCChHHHHHHHh--cccccCCeEec
Q 009902 159 NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD-G----------SPLNAPPLIRAIAK--DAILSRCKIIA 224 (523)
Q Consensus 159 n~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~-~~~~~-~----------~~~~~~~~~~~~~~--~~~~~~~~~i~ 224 (523)
|+.+|+||++|++++++|++++||||||+|++.+| +.+.. + ...++..+++.+++ ....|++++||
T Consensus 277 ~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iA 356 (639)
T PRK14706 277 DYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIA 356 (639)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 99999999999999999999999999999987776 22221 1 11234567777775 24579999999
Q ss_pred ccCCCCcCcccCCCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhh
Q 009902 225 EPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYD 304 (523)
Q Consensus 225 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~ 304 (523)
|.|..-.........+..+.+.|+..+++.+.+++..+..........+... .++. .... ..|++|||+.+...
T Consensus 357 E~~~~~~~v~~~~~~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~-~~y~----~~e~-~il~~SHDev~~~k 430 (639)
T PRK14706 357 EESTSFPGVTVPTPYGLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFF-NVYR----TSEN-YVLAISHDEVVHLK 430 (639)
T ss_pred ECCCCCcCcccccCCCCccccEeccHHHHHHHHHhccCchhhhhchhccchh-hhhh----cccc-EecCCCCccccCCc
Confidence 9886432222111113345699999999988888865543321111111100 0110 0011 22679999976422
Q ss_pred --hhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCC
Q 009902 305 --LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNN 382 (523)
Q Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~ 382 (523)
++... .|. ...+...++++++++||+||+|+||||+|+|+.+..
T Consensus 431 ~sl~~k~-------------------------~g~------~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew--- 476 (639)
T PRK14706 431 KSMVMKM-------------------------PGD------WYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEW--- 476 (639)
T ss_pred cchHhHc-------------------------CCC------HHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCC---
Confidence 11100 000 011345788899999999999999999999975432
Q ss_pred CCCCCCCCCccccCcccc-ccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCC-CeE
Q 009902 383 SYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNG-ADI 460 (523)
Q Consensus 383 ~~~~~~~r~~~~W~~~~~-~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~-~~~ 460 (523)
..+.+|+|...+. ....+++++|+|++||+++|+|+.|++... .+.|+... +.+++|+||.|..+++ +.+
T Consensus 477 -----~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~-~f~wi~~~--d~~~~VlaF~R~~~~~~~~v 548 (639)
T PRK14706 477 -----NHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREE-GLYWVSAD--DTDNSVYAYVRRDSESGAWS 548 (639)
T ss_pred -----CcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCC-CeEEEEee--cCCCCEEEEEEecCCCCeeE
Confidence 2456789987652 235699999999999999999999886532 35555332 4567899999987632 459
Q ss_pred EEEEeCCCC---cEEEEcCCCCCCCCeEEEEeCCCCCCCCC-------CCC--CC--CCCCCeEEEcCCEEEEEEeC
Q 009902 461 YLAFNAHDF---FVKVSLPPPPPKRQWFRVVDTNLESPDDI-------VPE--GA--AGTGSTYNLSPYSSILLEAK 523 (523)
Q Consensus 461 lvv~N~s~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~--~~~~~~i~l~p~~~~vl~~~ 523 (523)
+||+||++. ...+.+|. .+.|+++++++...-... ... .. ...+.+|+|||.+++||+.+
T Consensus 549 lvV~Nfs~~~~~~y~ig~p~---~g~~~~i~nsd~~~~gG~g~~n~~~~~~~~~~~g~~~si~i~lp~~~~~~~~~~ 622 (639)
T PRK14706 549 LAVANLTPVYREQYRIGVPQ---GGEYRVLLSTDDGEYGGFGTQQPDLMASQEGWHGQPHSLSLNLPPSSVLILEFV 622 (639)
T ss_pred EEEEeCCCCCcCCeEECCCC---CCeEEEEEcCCccccCCCCCCCCceeccccccCCCccEEEEEeCCcEEEEEEEC
Confidence 999999984 55666664 799999999986531110 000 00 11235789999999999864
No 14
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=6.6e-61 Score=511.04 Aligned_cols=481 Identities=25% Similarity=0.427 Sum_probs=341.8
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc-------chHHHHcCCCEEEECCCcccchhhhhhc--------------CCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK-------IPHLLELGINAVELLPVFEFDEMEFQRR--------------RNP 59 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~-------Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~--------------~~~ 59 (523)
||||+|+..+ ++++..++|+|.|++++ |+|||+||||+|+|||++++....+... +..
T Consensus 345 lHVRDFS~~d-~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s 423 (970)
T PLN02877 345 LHVRDFSAND-ETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDS 423 (970)
T ss_pred EeccccccCC-CCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccc
Confidence 6999999876 45677888999999987 6677777999999999999854221000 000
Q ss_pred ----------CCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCccc
Q 009902 60 ----------RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT 129 (523)
Q Consensus 60 ----------~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~ 129 (523)
.+....+|||+|.+|++++.+|+|.|.++ .||.|||+||++||++||+||||+|+|||+. .+||..
T Consensus 424 ~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~-~RI~efk~mV~~lH~~GI~VImDVVyNHt~~---~g~~~~ 499 (970)
T PLN02877 424 EEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGP-CRIIEFRKMVQALNRIGLRVVLDVVYNHLHS---SGPFDE 499 (970)
T ss_pred hhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCc-chHHHHHHHHHHHHHCCCEEEEEECCccccC---CCCcch
Confidence 01123799999999999999999987655 7999999999999999999999999999998 677652
Q ss_pred --ccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHH
Q 009902 130 --SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPL 207 (523)
Q Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~ 207 (523)
.+++..+..||..++.+.+.+. .|+.+.+.++++||++|++++++|+++|||||||||.++++.++. +....+.
T Consensus 500 ~s~ld~~vP~YY~r~~~~G~~~ns-~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~t---m~~~~~~ 575 (970)
T PLN02877 500 NSVLDKIVPGYYLRRNSDGFIENS-TCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRT---MVRAKDA 575 (970)
T ss_pred hhcccCCCCCceEEECCCCCcccC-CccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHH---HHHHHHH
Confidence 3444444444444677777774 566778999999999999999999999999999999999997653 3334455
Q ss_pred HHHHHhc--cc-ccCCeEecccCCCCcCcccC--------CCCCcccchhhhhHHHHHHHH---HHc-CCCCcH------
Q 009902 208 IRAIAKD--AI-LSRCKIIAEPWDCRGLYLVG--------KFPNWDRWAEWNGKYRDDLRK---FIK-GDPGMK------ 266 (523)
Q Consensus 208 ~~~~~~~--~~-~~~~~~i~E~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~------ 266 (523)
++++..+ .. .|.++++||.|+.+...... +.. ...++.||+.+++.++. |-. ...++.
T Consensus 576 L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~-g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~ 654 (970)
T PLN02877 576 LQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLA-GTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQ 654 (970)
T ss_pred HHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccC-CCceEEecchhHHHHcCCCCCCCcCCCceecccccC
Confidence 6665432 12 37799999999876431111 111 12468888888888874 200 000111
Q ss_pred --------------------HHHHHHhhCCccc------------------ccc----CCCCCCccEEEEeccCCCchhh
Q 009902 267 --------------------GILATRISGSSDL------------------YRV----NKRKPYHSINFIIAHDGFTLYD 304 (523)
Q Consensus 267 --------------------~~~~~~l~~~~~~------------------~~~----~~~~~~~~~~f~~nHD~~~~~~ 304 (523)
..+...+.++..- +.. ....|.+++||+++||+.+|.|
T Consensus 655 pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D 734 (970)
T PLN02877 655 PNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFD 734 (970)
T ss_pred CcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHH
Confidence 1112223333211 111 1236788999999999999999
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCC
Q 009902 305 LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 384 (523)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~ 384 (523)
.+.+..... .....+.++.+++++++|+.+|||+|++|+|+..++.+++++|
T Consensus 735 ~l~~~~~~~----------------------------~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSY 786 (970)
T PLN02877 735 IISLKTPME----------------------------ISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSY 786 (970)
T ss_pred HHHhhcCCC----------------------------CCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCC
Confidence 886542211 0122356788899999999999999999999999999999999
Q ss_pred CCCCCCCccccCccc-----------cc----------------------cchHHHHHHHHHHHHhcCcCcCccCcCCcC
Q 009902 385 GHDTAINNFQWGQLE-----------TK----------------------KNSHYRFFSEVIKFRQSRRVFGREDFLNIN 431 (523)
Q Consensus 385 ~~~~~r~~~~W~~~~-----------~~----------------------~~~~~~~~~~L~~lRk~~paL~~g~~~~~~ 431 (523)
++.++.+.++|+... .. -....++|+.||+|||++|+|+.++...+.
T Consensus 787 nSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~ 866 (970)
T PLN02877 787 NSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQ 866 (970)
T ss_pred cCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHH
Confidence 999999999999832 11 134588999999999999999999877653
Q ss_pred -ceeeeccccCCCCCcEEEEEEecCC------------CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCC
Q 009902 432 -DVTWHEDNWDNYDSKFLAFTLHDNN------------GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDI 498 (523)
Q Consensus 432 -~~~~~~~~~~~~~~~v~af~R~~~~------------~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 498 (523)
++.|++..- ...++|++|.-.... -+.++||+|.+.+++++.+|... +.. ..+...........
T Consensus 867 ~~v~F~~~g~-~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~~~-~~~-~~l~~v~~~~~d~~ 943 (970)
T PLN02877 867 ERVRFHNTGP-SSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSFESPALK-GRT-LELHPVQVMSADEV 943 (970)
T ss_pred hhcEEeccCC-CcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCCccEEEeccccc-ccc-eeecccccccccce
Confidence 477775431 235699999986642 15699999999999999998642 111 12221111111111
Q ss_pred CCC-CCCCCCCeEEEcCCEEEEEEe
Q 009902 499 VPE-GAAGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 499 ~~~-~~~~~~~~i~l~p~~~~vl~~ 522 (523)
... .......+++|||++++||+.
T Consensus 944 ~~~~~~~~~~~~~tvp~~t~aVfv~ 968 (970)
T PLN02877 944 VKKSVYEASSGVFTVPPRTTAVFVE 968 (970)
T ss_pred eccceeeccCCeEEecCceEEEEEe
Confidence 111 112234799999999999975
No 15
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=9.5e-61 Score=516.70 Aligned_cols=440 Identities=20% Similarity=0.346 Sum_probs=297.7
Q ss_pred CcccCCCCC-CCCCCCCCCCccHHhHHhcc-hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC
Q 009902 1 MNVRAFTGD-ESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 78 (523)
Q Consensus 1 ~~~~~f~~~-~~~g~~~~~~Gd~~gl~~~L-dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd 78 (523)
||||||+++ +++++ |+|+||+++| ||||+||||+||||||+++ +. ..+|||+++||++|+
T Consensus 247 ~hv~~f~~~~~~~~~-----g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~--------~~-----~~~~GY~~~~y~ai~ 308 (726)
T PRK05402 247 VHLGSWRRHEDGGRF-----LSYRELADQLIPYVKEMGFTHVELLPIAEH--------PF-----DGSWGYQPTGYYAPT 308 (726)
T ss_pred EehhhhccCCCCCcc-----cCHHHHHHHHHHHHHHcCCCEEEECCcccC--------CC-----CCCCCCCcccCCCcC
Confidence 699999987 55666 9999999996 9999999999999999997 22 268999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCC-CCCccccCCcCCc
Q 009902 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDG-TGQLLNYAGCGNT 157 (523)
Q Consensus 79 ~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d 157 (523)
|+|||. +|||+||++||++||+||||+|+||++. ++..+..+++. +.|+..++ .+....+.. ..
T Consensus 309 ~~~Gt~--------~dfk~lV~~~H~~Gi~VilD~V~NH~~~---~~~~~~~~~~~--~~y~~~~~~~~~~~~w~~--~~ 373 (726)
T PRK05402 309 SRFGTP--------DDFRYFVDACHQAGIGVILDWVPAHFPK---DAHGLARFDGT--ALYEHADPREGEHPDWGT--LI 373 (726)
T ss_pred cccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC---CccchhccCCC--cceeccCCcCCccCCCCC--cc
Confidence 999998 9999999999999999999999999988 55445455432 22332222 222233332 36
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccc-cCC---CCCCC----------CChHHHHHHHh--cccccCCe
Q 009902 158 LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC-RGT---DGSPL----------NAPPLIRAIAK--DAILSRCK 221 (523)
Q Consensus 158 ln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~-~~~---~~~~~----------~~~~~~~~~~~--~~~~~~~~ 221 (523)
+|+.+|+||++|++++++|++++||||||||++.++. .+. .|.|. ....+++.+++ +..+|+++
T Consensus 374 ~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~ 453 (726)
T PRK05402 374 FNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGAL 453 (726)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 8999999999999999999999999999999876552 221 12221 13457777765 24579999
Q ss_pred EecccCCCCcCcccCC-CCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCC
Q 009902 222 IIAEPWDCRGLYLVGK-FPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF 300 (523)
Q Consensus 222 ~i~E~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~ 300 (523)
+|||.+..-....... ....++...||..++..+..++.............+... .++. .. ...+++.|||+.
T Consensus 454 liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~--~~---e~~~l~~sHD~~ 527 (726)
T PRK05402 454 TIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFS-LLYA--YS---ENFVLPLSHDEV 527 (726)
T ss_pred EEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHH-HhHh--hh---ccccCCCCCcee
Confidence 9999653221111110 111234488888887777777653321111000000000 0000 00 112466899986
Q ss_pred chhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCC
Q 009902 301 TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN 380 (523)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~ 380 (523)
+........ .. .|. ......++|++++++||+||+||||||+|+|+.+...
T Consensus 528 ~~g~~~l~~----~~-------------------~g~------~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~ 578 (726)
T PRK05402 528 VHGKGSLLG----KM-------------------PGD------DWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWN 578 (726)
T ss_pred eeCcccHHh----hC-------------------CCC------HHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCC
Confidence 421110000 00 010 0112457888999999999999999999999987432
Q ss_pred CCCCCCCCCCCccccCccc-cccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCC-CC
Q 009902 381 NNSYGHDTAINNFQWGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GA 458 (523)
Q Consensus 381 ~~~~~~~~~r~~~~W~~~~-~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~-~~ 458 (523)
.+.+|+|+..+ .....++++||+|++||+++|+|+.|++... .+.|...+ +.+++|+||.|..++ ++
T Consensus 579 --------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~-~~~~~~~~--~~~~~vlaf~R~~~~~~~ 647 (726)
T PRK05402 579 --------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPE-GFEWIDAD--DAENSVLSFLRRGKDDGE 647 (726)
T ss_pred --------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcC-CeeEEecc--cCCCCEEEEEEecCCCCC
Confidence 25789998643 2345799999999999999999998876542 34554321 346789999998653 58
Q ss_pred eEEEEEeCCCCc---EEEEcCCCCCCCCeEEEEeCCCCCC-CCC--CCCCC---------CCCCCeEEEcCCEEEEEEe
Q 009902 459 DIYLAFNAHDFF---VKVSLPPPPPKRQWFRVVDTNLESP-DDI--VPEGA---------AGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 459 ~~lvv~N~s~~~---~~~~l~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~---------~~~~~~i~l~p~~~~vl~~ 522 (523)
.++||+|+++.+ +.+.+|. +++|++++++....- ... ..... ...+..|.|||++++||+.
T Consensus 648 ~vlvv~N~~~~~~~~y~i~~p~---~g~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~ 723 (726)
T PRK05402 648 PLLVVCNFTPVPRHDYRLGVPQ---AGRWREVLNTDAEHYGGSNVGNGGGVHAEEVPWHGRPHSLSLTLPPLATLILKP 723 (726)
T ss_pred eEEEEEeCCCCcccceEECCCC---CCeEEEEEcCcchhhCCCCCCCCCceeccccccCCCCCEEEEEeCCCEEEEEEE
Confidence 899999999765 3455553 689999999976541 110 00000 0122478999999999986
No 16
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=4.4e-61 Score=501.64 Aligned_cols=379 Identities=26% Similarity=0.433 Sum_probs=271.6
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
||||+|++. |||+||+++|||||+||||+||||||+++ ++ ..+|||++++|++|+++
T Consensus 99 ~hv~~f~~~----------G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~--------~~-----~~~~GY~~~~~~~~~~~ 155 (542)
T TIGR02402 99 LHVGTFTPE----------GTFDAAIEKLPYLADLGITAIELMPVAQF--------PG-----TRGWGYDGVLPYAPHNA 155 (542)
T ss_pred EEhhhcCCC----------CCHHHHHHhhHHHHHcCCCEEEeCccccC--------CC-----CCCCCCCccCccccccc
Confidence 699999752 99999999999999999999999999987 22 26799999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCC
Q 009902 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC 160 (523)
Q Consensus 81 ~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 160 (523)
|||. +|||+||++||++||+||||+|+||++. ++.++..+. + ||.... ..+|++++|+
T Consensus 156 ~G~~--------~e~k~lV~~aH~~Gi~VilD~V~NH~~~---~~~~~~~~~----~-y~~~~~------~~~wg~~~n~ 213 (542)
T TIGR02402 156 YGGP--------DDLKALVDAAHGLGLGVILDVVYNHFGP---EGNYLPRYA----P-YFTDRY------STPWGAAINF 213 (542)
T ss_pred cCCH--------HHHHHHHHHHHHCCCEEEEEEccCCCCC---ccccccccC----c-cccCCC------CCCCCCcccc
Confidence 9997 9999999999999999999999999998 555553331 2 554221 2456789999
Q ss_pred CCH---HHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHh--cccccC---CeEecccCCCCcC
Q 009902 161 NHP---VVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK--DAILSR---CKIIAEPWDCRGL 232 (523)
Q Consensus 161 ~~p---~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~i~E~~~~~~~ 232 (523)
++| +|+++|++++++|+++|||||||||++.+|.+.. ...+++++++ +...|+ +++|||.|.....
T Consensus 214 ~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~------~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~ 287 (542)
T TIGR02402 214 DGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTS------AKHILEELAREVHELAAELRPVHLIAESDLNDPS 287 (542)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcccc------HHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCc
Confidence 999 9999999999999999999999999999986531 2334555444 234566 9999998754422
Q ss_pred ccc-CCCCCcccchhhhhHHHHHHHHHHcCCC-C-------cHHHHHHHhhCC------ccccc-------cCCCCCCcc
Q 009902 233 YLV-GKFPNWDRWAEWNGKYRDDLRKFIKGDP-G-------MKGILATRISGS------SDLYR-------VNKRKPYHS 290 (523)
Q Consensus 233 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~l~~~------~~~~~-------~~~~~~~~~ 290 (523)
... .......+.+.|+..|++.++.++.+.. + ....+...+... ...+. .....+.+.
T Consensus 288 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (542)
T TIGR02402 288 LVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRF 367 (542)
T ss_pred ccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHE
Confidence 221 1111233568999999999999887643 1 122333333311 00000 001134678
Q ss_pred EEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecc
Q 009902 291 INFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMG 370 (523)
Q Consensus 291 ~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G 370 (523)
++|++|||+..... .+ +|.......+++++|++++||+||+||||||
T Consensus 368 vnfl~nHD~~gn~~-----------~~----------------------~Rl~~~~~~~~~~la~alllt~pGiP~Iy~G 414 (542)
T TIGR02402 368 VVFIQNHDQIGNRA-----------LG----------------------ERLSQLLSPGSLKLAAALLLLSPYTPLLFMG 414 (542)
T ss_pred EEEccCcccccccc-----------hh----------------------hhhhhcCCHHHHHHHHHHHHHcCCCceeecc
Confidence 99999999621000 00 1111111235889999999999999999999
Q ss_pred cccccccCCCC------------------CC--------CCC--C-----CCCCccccCcccc-ccchHHHHHHHHHHHH
Q 009902 371 DEYGHTRYGNN------------------NS--------YGH--D-----TAINNFQWGQLET-KKNSHYRFFSEVIKFR 416 (523)
Q Consensus 371 ~E~g~~~~~~~------------------~~--------~~~--~-----~~r~~~~W~~~~~-~~~~~~~~~~~L~~lR 416 (523)
||+|+.+...- .+ ... + -++++++|+.... ...+++++||+||+||
T Consensus 415 qE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lR 494 (542)
T TIGR02402 415 EEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALR 494 (542)
T ss_pred HhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHh
Confidence 99999875210 00 000 0 1367889987652 4568999999999999
Q ss_pred hcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEE
Q 009902 417 QSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKV 473 (523)
Q Consensus 417 k~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~ 473 (523)
|++|+|+.++...+.. . ...++.+++|. .+ ++.++|++|+++.++++
T Consensus 495 k~~~~l~~~~~~~~~~-~------~~~~~~~~~~~--~~-~~~~~v~~N~~~~~~~~ 541 (542)
T TIGR02402 495 RELPVLLLPGARALEV-V------VDEDPGWVAVR--FG-RGELVLAANLSTSPVAV 541 (542)
T ss_pred ccCccccCCCccccee-e------ecCCCCEEEEE--EC-CCeEEEEEeCCCCCcCC
Confidence 9999999887654421 0 02457888888 33 67899999999887653
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.5e-60 Score=510.49 Aligned_cols=475 Identities=24% Similarity=0.410 Sum_probs=336.3
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc-------chHHHHcCCCEEEECCCcccchhhhhhc----------------C
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK-------IPHLLELGINAVELLPVFEFDEMEFQRR----------------R 57 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~-------Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~----------------~ 57 (523)
||||+|+..+.+ +++.++|+|.|++++ |+||++||||+|+||||++.....+... +
T Consensus 258 lHVRDFS~~d~s-~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~ 336 (898)
T TIGR02103 258 LHIRDFSANDES-VPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNP 336 (898)
T ss_pred EeccccccCCCC-CCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhcccc
Confidence 699999987665 445678999999987 6666688999999999999853221100 0
Q ss_pred CC---------------------------------CCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 009902 58 NP---------------------------------RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 104 (523)
Q Consensus 58 ~~---------------------------------~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~ 104 (523)
.. .+....+|||+|.+|++++.+|++.| ++.+||.|||+||++||+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp-~g~~Ri~Efk~mV~alH~ 415 (898)
T TIGR02103 337 DSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDP-EGPARIKEFREMVQALNK 415 (898)
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCC-CCchHHHHHHHHHHHHHH
Confidence 00 00012589999999999999999987 577999999999999999
Q ss_pred CCCEEEEeeccccccCCCCCCCcccc-cCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhcccc
Q 009902 105 AGIEVILDVVYNHTNEADDANPYTTS-FRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVD 183 (523)
Q Consensus 105 ~Gi~VilD~V~nH~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvD 183 (523)
+||+||||+|+|||+. .+++... +++..+..||+.+.++.+.++.+| .+++.++|+|+++|++++++|+++||||
T Consensus 416 ~Gi~VIlDVVyNHt~~---~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~-~d~a~e~~~Vrk~iiDsl~~W~~ey~VD 491 (898)
T TIGR02103 416 TGLNVVMDVVYNHTNA---SGPNDRSVLDKIVPGYYHRLNEDGGVENSTCC-SNTATEHRMMAKLIVDSLVVWAKDYKVD 491 (898)
T ss_pred CCCEEEEEeecccccc---cCccCcccccccCcHhhEeeCCCCCeecCCCC-cCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998 5554432 333333334444556767776655 6889999999999999999999999999
Q ss_pred EEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCCcCcc-----c---CCCCCcccchhhhhHHHHHH
Q 009902 184 GFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYL-----V---GKFPNWDRWAEWNGKYRDDL 255 (523)
Q Consensus 184 GfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~ 255 (523)
|||||++++++.++ +..+.+++. ...|+++++||.|..+.... . .+.. ...++.||+.+++.+
T Consensus 492 GFRfDlm~~~~~~f------~~~~~~~l~--~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~-~~~ig~FnD~~RDav 562 (898)
T TIGR02103 492 GFRFDLMGHHPKAQ------MLAAREAIK--ALTPEIYFYGEGWDFGEVANNRRFINATQLNLA-GTGIGTFSDRLRDAV 562 (898)
T ss_pred EEEEechhhCCHHH------HHHHHHHHH--HhCCCEEEEecCCCcccccchhhhhhhhccccC-CCCeEEeccchhhHh
Confidence 99999999997664 222222222 35789999999998653221 1 1111 124678888888887
Q ss_pred HHH--HcC------CCCcH-------------------------HHHHHHhhCCcc----------------c-cc----
Q 009902 256 RKF--IKG------DPGMK-------------------------GILATRISGSSD----------------L-YR---- 281 (523)
Q Consensus 256 ~~~--~~~------~~~~~-------------------------~~~~~~l~~~~~----------------~-~~---- 281 (523)
+.- +.. ..++. ..+...+.++.. + +.
T Consensus 563 rGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~ 642 (898)
T TIGR02103 563 RGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPA 642 (898)
T ss_pred cCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCcc
Confidence 741 111 00100 012222333321 0 00
Q ss_pred cCCCCCCccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHc
Q 009902 282 VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVS 361 (523)
Q Consensus 282 ~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (523)
.....|...+||+++||+.+|.+.+.+...... ....+.++.+++++++|+.
T Consensus 643 ~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~----------------------------~~~~r~r~~~la~a~~~ls 694 (898)
T TIGR02103 643 GYAADPTETINYVSKHDNQTLWDAISYKAAAET----------------------------PSAERVRMQAVSLSTVMLG 694 (898)
T ss_pred ccccCHHHheeeeeccCCccHHHHHHhhCCCCC----------------------------CHHHHHHHHHHHHHHHHHh
Confidence 112467889999999999999998875432110 0123456788899999999
Q ss_pred CCeeeeecccccccccCCCCCCCCCCCCCCccccCccccc---------------------------------cchHHHH
Q 009902 362 QGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETK---------------------------------KNSHYRF 408 (523)
Q Consensus 362 pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~---------------------------------~~~~~~~ 408 (523)
+|||+|++|+|+..++.+++++|+..++.+.++|+..... .....++
T Consensus 695 QGipF~haG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~ 774 (898)
T TIGR02103 695 QGIPFFHAGSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAF 774 (898)
T ss_pred ChhhHHhcchHhhcCCCCCCCCCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHH
Confidence 9999999999999999999999999999999999875421 1468999
Q ss_pred HHHHHHHHhcCcCcCccCcCCcC-ceeeeccccCCCCCcEEEEEEecCC----------CCeEEEEEeCCCCcEEEEcCC
Q 009902 409 FSEVIKFRQSRRVFGREDFLNIN-DVTWHEDNWDNYDSKFLAFTLHDNN----------GADIYLAFNAHDFFVKVSLPP 477 (523)
Q Consensus 409 ~~~L~~lRk~~paL~~g~~~~~~-~~~~~~~~~~~~~~~v~af~R~~~~----------~~~~lvv~N~s~~~~~~~l~~ 477 (523)
|+.||+||+++|+|+.++...+. ++.|++..- ...++|++|.-.... -+.++||+|.+.+++++ ++.
T Consensus 775 ~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g~-~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~-~~~ 852 (898)
T TIGR02103 775 FLELLRIRSSSPLFRLDTAAEVMKRVDFRNTGP-DQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPEEVTL-SPD 852 (898)
T ss_pred HHHHHHHHhCCcccCCCCHHHHHhheEEeccCC-cCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCccEEE-ecc
Confidence 99999999999999999877553 477775421 234799999986641 25699999999999998 765
Q ss_pred CCCCCCeEEEEeCCCCCCCCCCCC-CCCCCCCeEEEcCCEEEEEEe
Q 009902 478 PPPKRQWFRVVDTNLESPDDIVPE-GAAGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~p~~~~vl~~ 522 (523)
.. +..|.. +............. .......+++|||++++||+.
T Consensus 853 ~~-~~~~~l-~~~~~~~~d~~v~~~~~~~~~~~~~vp~~s~~V~~~ 896 (898)
T TIGR02103 853 FA-GTGLEL-HAVQQASGDESVAKSVYSAANGTFTVPAWTTAVFVL 896 (898)
T ss_pred cC-CCcEEE-EecccccCccccccceeeccCCEEEEcCcEEEEEEe
Confidence 42 334554 33322211111111 111234799999999999985
No 18
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.8e-60 Score=505.29 Aligned_cols=435 Identities=20% Similarity=0.305 Sum_probs=295.5
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcc-hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~L-dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
||||+|++. |+|++|+++| ||||+||||+||||||+++ +. ..+|||++++|++|++
T Consensus 144 ~hv~~~~~~----------g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~--------~~-----~~~wGY~~~~y~~~~~ 200 (613)
T TIGR01515 144 LHLGSWRHG----------LSYRELADQLIPYVKELGFTHIELLPVAEH--------PF-----DGSWGYQVTGYYAPTS 200 (613)
T ss_pred EehhhccCC----------CCHHHHHHHHHHHHHHcCCCEEEECCcccC--------CC-----CCCCCCCcccCccccc
Confidence 689999653 9999999997 9999999999999999997 22 2679999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCC
Q 009902 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLN 159 (523)
Q Consensus 80 ~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 159 (523)
+|||. +|||+||++||++||+||||+|+||++. ++..+..+.+. +.|+..++.......++ .++||
T Consensus 201 ~~Gt~--------~dlk~lV~~~H~~Gi~VilD~V~NH~~~---~~~~~~~~~~~--~~y~~~~~~~~~~~~w~-~~~~~ 266 (613)
T TIGR01515 201 RFGTP--------DDFMYFVDACHQAGIGVILDWVPGHFPK---DDHGLAEFDGT--PLYEHKDPRDGEHWDWG-TLIFD 266 (613)
T ss_pred ccCCH--------HHHHHHHHHHHHCCCEEEEEecccCcCC---ccchhhccCCC--cceeccCCccCcCCCCC-Cceec
Confidence 99998 9999999999999999999999999998 55545444332 23433333222222233 47899
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEccccccc-cCC---CCCC----------CCChHHHHHHHh--cccccCCeEe
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC-RGT---DGSP----------LNAPPLIRAIAK--DAILSRCKII 223 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~-~~~---~~~~----------~~~~~~~~~~~~--~~~~~~~~~i 223 (523)
+++|+||++|++++++|+++|||||||||+++++. .+. .|+| .+...+++++++ +...|++++|
T Consensus 267 ~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~li 346 (613)
T TIGR01515 267 YGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTI 346 (613)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999999999999999986552 111 0111 223467777766 3457999999
Q ss_pred cccCCCCcCcccCCC-CCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCch
Q 009902 224 AEPWDCRGLYLVGKF-PNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTL 302 (523)
Q Consensus 224 ~E~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~ 302 (523)
||.+........... ....+...|++.+...+..++.... ....+..........+ ... ....+++|||+.+.
T Consensus 347 aE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~---e~~~~~~sHD~~~~ 420 (613)
T TIGR01515 347 AEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDP-VERQYHHQLITFSMLY--AFS---ENFVLPLSHDEVVH 420 (613)
T ss_pred EEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhCh-hhHhhccccccHHHHH--Hhh---hccccCCCCCCccc
Confidence 997643322211111 1223558999999988888875432 1111110000000000 000 11225689998532
Q ss_pred hhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCC
Q 009902 303 YDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNN 382 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~ 382 (523)
...... +... |. +. ....++|++++++||+||+||||||+|+|+.+...
T Consensus 421 g~~~i~----~~~~-------------------g~---~~---~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~-- 469 (613)
T TIGR01515 421 GKKSLL----NKMP-------------------GD---YW---QKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWN-- 469 (613)
T ss_pred CcccHH----HhCC-------------------Cc---hH---HHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCC--
Confidence 110000 0000 10 00 01447888999999999999999999999976432
Q ss_pred CCCCCCCCCccccCccc-cccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCC-CCeE
Q 009902 383 SYGHDTAINNFQWGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GADI 460 (523)
Q Consensus 383 ~~~~~~~r~~~~W~~~~-~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~-~~~~ 460 (523)
....|+|+..+ .....++++||+|++||+++|+|+.+++... .+.|+..+ +.+.+|+||.|...+ ++.+
T Consensus 470 ------~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~-~~~~~~~~--~~~~~vlaf~R~~~~~~~~~ 540 (613)
T TIGR01515 470 ------DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQ-GFEWIDVD--DDEQSVFSFIRRAKKHGEAL 540 (613)
T ss_pred ------CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCCCCC-ceEEEEcc--cCCCCEEEEEEecCCCCCeE
Confidence 13578998643 2346899999999999999999998877542 34555321 346789999998752 4679
Q ss_pred EEEEeCCCCcEE---EEcCCCCCCCCeEEEEeCCCCC-C-C-CCCCC-------CC--CCCCCeEEEcCCEEEEEE
Q 009902 461 YLAFNAHDFFVK---VSLPPPPPKRQWFRVVDTNLES-P-D-DIVPE-------GA--AGTGSTYNLSPYSSILLE 521 (523)
Q Consensus 461 lvv~N~s~~~~~---~~l~~~~~~~~~~~~~~~~~~~-~-~-~~~~~-------~~--~~~~~~i~l~p~~~~vl~ 521 (523)
+||+|+++.+.. +.+|. .++|++++++.... . . ..... .. ...+..|.|||++++||+
T Consensus 541 ~vv~N~~~~~~~~Y~i~~p~---~g~~~~il~Sd~~~~gG~g~~~~~~~~~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 541 VIICNFTPVVRHQYRVGVPQ---PGQYREVLNSDSETYGGSGQGNKGPLSAEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred EEEEeCCCCCccceEeCCCC---CCeEEEEEeCChhhcCCCCcCCCCceeccccccCCCCCEEEEEeCCcEEEEeC
Confidence 999999987554 65554 48999999987643 1 1 00000 00 112346899999999985
No 19
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-59 Score=492.36 Aligned_cols=441 Identities=20% Similarity=0.324 Sum_probs=310.1
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc-chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~-Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
|||+||+.+++++. +++++++++ |||||+||||+||||||+++ +. ..+|||++++|+++++
T Consensus 252 vHvgsf~~~~~~~~-----~~~~~la~~ll~ylk~LGvt~I~LmPi~e~--------~~-----~~~wGY~~~~~~a~~~ 313 (730)
T PRK12568 252 VHAASWRRDGHNQP-----LDWPTLAEQLIPYVQQLGFTHIELLPITEH--------PF-----GGSWGYQPLGLYAPTA 313 (730)
T ss_pred EEhHHhcCCCCCCC-----CCHHHHHHHHHHHHHHcCCCEEEECccccC--------CC-----CCCCCCCCCcCCccCc
Confidence 69999998765555 899999998 59999999999999999997 22 2689999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCC
Q 009902 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLN 159 (523)
Q Consensus 80 ~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 159 (523)
+||+. +||++||++||++||+||||+|+||++. +..-+..|++. ..|...++.......+++. .+|
T Consensus 314 ~~G~~--------~dfk~lV~~~H~~Gi~VIlD~V~nH~~~---d~~~l~~fdg~--~~Ye~~d~~~g~~~~W~~~-~~N 379 (730)
T PRK12568 314 RHGSP--------DGFAQFVDACHRAGIGVILDWVSAHFPD---DAHGLAQFDGA--ALYEHADPREGMHRDWNTL-IYN 379 (730)
T ss_pred ccCCH--------HHHHHHHHHHHHCCCEEEEEeccccCCc---cccccccCCCc--cccccCCCcCCccCCCCCe-ecc
Confidence 99997 9999999999999999999999999998 43223344432 2233333322222222222 589
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEcccccc-ccCC---CCCCC----------CChHHHHHHHh--cccccCCeEe
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGT---DGSPL----------NAPPLIRAIAK--DAILSRCKII 223 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~-~~~~---~~~~~----------~~~~~~~~~~~--~~~~~~~~~i 223 (523)
+.+|+|+++|++++++|+++|||||||+|++.+| ..+. .|.|. +...+++++++ ....|++++|
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~I 459 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTI 459 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999987665 2221 23332 23467777776 3567999999
Q ss_pred cccCCCCcCcccCCC-CCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCch
Q 009902 224 AEPWDCRGLYLVGKF-PNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTL 302 (523)
Q Consensus 224 ~E~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~ 302 (523)
||.+..-+....... ....+...||..+++.+.+|+..+..........+..... +. + .....+..|||+.-.
T Consensus 460 AEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~-y~--~---~e~fvlp~SHDEvvh 533 (730)
T PRK12568 460 AEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLV-YA--F---SERFVLPLSHDEVVH 533 (730)
T ss_pred EEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhh-hh--h---hccEeccCCCccccc
Confidence 997543221111111 1223559999999999999998766544333333332111 10 0 011235679998532
Q ss_pred hhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCC
Q 009902 303 YDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNN 382 (523)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~ 382 (523)
.. ...... ..|.. .-+...+|++++++||.||.|+||||+|+|..+..+.
T Consensus 534 gk-------~sl~~k----------------mpGd~------~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~- 583 (730)
T PRK12568 534 GT-------GGLLGQ----------------MPGDD------WRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNH- 583 (730)
T ss_pred Cc-------hhhhhc----------------CCCCH------HHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccC-
Confidence 10 000000 01110 1134577889999999999999999999999875543
Q ss_pred CCCCCCCCCccccCcccc-ccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCC--CCe
Q 009902 383 SYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN--GAD 459 (523)
Q Consensus 383 ~~~~~~~r~~~~W~~~~~-~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~--~~~ 459 (523)
..+++|...+. .+..+.+++|+|++||+++|+|...+.... .+.|+..+ +.+++|+||.|..++ ++.
T Consensus 584 -------~~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~-gf~wi~~~--d~~~sv~af~R~~~~~~~~~ 653 (730)
T PRK12568 584 -------DQSLDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRAD-GFDWSVAD--DARNSVLAFIRHDPDGGGVP 653 (730)
T ss_pred -------CCCccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCCC-CeEEEeCC--CCCCcEEEEEEecCCCCCCe
Confidence 24689988652 346799999999999999999998876543 57888653 567889999998753 356
Q ss_pred EEEEEeCCCCcE---EEEcCCCCCCCCeEEEEeCCCCCC--CCCCC------CC--C--CCCCCeEEEcCCEEEEEEe
Q 009902 460 IYLAFNAHDFFV---KVSLPPPPPKRQWFRVVDTNLESP--DDIVP------EG--A--AGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 460 ~lvv~N~s~~~~---~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~------~~--~--~~~~~~i~l~p~~~~vl~~ 522 (523)
++||+||++.++ .+.+|. .|.|+++++++...- +.... +. . ...+.+|+|||.+++||+.
T Consensus 654 v~vV~Nft~~~~~~Y~ig~p~---~G~~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~lppl~~~~~~~ 728 (730)
T PRK12568 654 LLAVSNLTPQPHHDYRVGVPR---AGGWREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTLPPLATIYLQA 728 (730)
T ss_pred EEEEECCCCCCccCeEECCCC---CCeEEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEeCCCEEEEEEE
Confidence 999999998754 455554 699999999976531 11100 00 0 1123579999999999986
No 20
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=7.9e-58 Score=474.91 Aligned_cols=387 Identities=18% Similarity=0.226 Sum_probs=264.1
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCC---------CCCCCCCCCCCCCCc
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF---------SPMSRYAAGGGGPLK 90 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~---------~vd~~~Gt~~~~~~~ 90 (523)
-+++||++|||||++||||+|||+||+++ ++. ..+|||++.||+ .|||+|||+
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~--------~~~----~~~hgY~~~D~~~~~~~~~~~~id~~fGt~------ 80 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKG--------TSG----GYDVGYGVYDLFDLGEFDQKGTVRTKYGTK------ 80 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccC--------CCC----CCCCCCCeecccccccccccCCcCcCcCCH------
Confidence 46779999999999999999999999998 211 257999999999 799999998
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCccccc-------------------------CCCCC------CcC
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF-------------------------RGIDN------KVY 139 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~-------------------------~~~~~------~~~ 139 (523)
+||++||++||++||+||+|+|+||++..+ .|+|+... .+... ..|
T Consensus 81 --~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (479)
T PRK09441 81 --EELLNAIDALHENGIKVYADVVLNHKAGAD-EKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHW 157 (479)
T ss_pred --HHHHHHHHHHHHCCCEEEEEECcccccCCC-cceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCC
Confidence 999999999999999999999999999632 34555310 00000 113
Q ss_pred eeeCCCC---------------CccccC------------CcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccc
Q 009902 140 YMVDGTG---------------QLLNYA------------GCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 140 ~~~~~~~---------------~~~~~~------------~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~ 192 (523)
+.+.+.. ....+. ..+||||++||+|+++|++++++|++++||||||+|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~ 237 (479)
T PRK09441 158 YHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKH 237 (479)
T ss_pred cCCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcC
Confidence 2222110 001111 1278999999999999999999999779999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCCcC----cccCCCCCcccchhhhhHHHHHHHHHHcCCCCcHHH
Q 009902 193 LCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGL----YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGI 268 (523)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (523)
|+.++ +..+.+++++ ...|+++++||.|..... +.... . ...+.+++++...++..+.+.. ...
T Consensus 238 v~~~f------~~~~~~~~~~-~~~~~~~~vGE~~~~~~~~~~~y~~~~-~--~~~~~~Df~~~~~l~~~~~~~~--~~~ 305 (479)
T PRK09441 238 IDAWF------IKEWIEHVRE-VAGKDLFIVGEYWSHDVDKLQDYLEQV-E--GKTDLFDVPLHYNFHEASKQGR--DYD 305 (479)
T ss_pred CCHHH------HHHHHHHHHH-hcCCCeEEEEeecCCChHHHHHHHHhc-C--CCceEecHHHHHHHHHHHhcCC--ccc
Confidence 97654 3333444332 224689999999976532 22110 0 0114667777777777665421 112
Q ss_pred HHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 009902 269 LATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRS 348 (523)
Q Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 348 (523)
+...+.... ....+..+++|++|||+.|+...... ...
T Consensus 306 l~~~~~~~~-----~~~~~~~~~~FldNHD~~R~~~~~~~-------------------------------------~~~ 343 (479)
T PRK09441 306 MRNIFDGTL-----VEADPFHAVTFVDNHDTQPGQALESP-------------------------------------VEP 343 (479)
T ss_pred hHhhhCcch-----hhcCcccceeeeccccCCCccccccc-------------------------------------ccc
Confidence 222221110 11234567999999999987432110 001
Q ss_pred HHHHHHHHHHHHcC-CeeeeecccccccccCCCCCCCCCCCCCCccccCccccccchHHHHHHHHHHHHhcCcCcCccCc
Q 009902 349 RQMKNFHLALMVSQ-GTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDF 427 (523)
Q Consensus 349 ~~~~~~~~~~~~~p-G~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~ 427 (523)
...++|++++||+| |+|+||||+|+|+.+..+ ..++++++++|++|||+++ .|+.
T Consensus 344 ~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~---------------------~~~l~~~i~~Li~lRk~~~---~G~~ 399 (479)
T PRK09441 344 WFKPLAYALILLREEGYPCVFYGDYYGASGYYI---------------------DMPFKEKLDKLLLARKNFA---YGEQ 399 (479)
T ss_pred cchHHHHHHHHhCCCCceeeEeccccCCCCCcc---------------------cchHHHHHHHHHHHHHHhC---CCCe
Confidence 13578999999999 999999999999965211 2369999999999999853 5665
Q ss_pred CCcCceeeeccccCCCCCcEEEEEEecCCC-CeEEEEEeCCC-CcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCC
Q 009902 428 LNINDVTWHEDNWDNYDSKFLAFTLHDNNG-ADIYLAFNAHD-FFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAG 505 (523)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~v~af~R~~~~~-~~~lvv~N~s~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (523)
..+ ..++++++|.|...++ +.++||+|.+. ...++.++....++.|++++...... +.. ...
T Consensus 400 ~~~-----------~~~~~~~~~~R~~~~~~~~vvvvinn~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~--~~~ 463 (479)
T PRK09441 400 TDY-----------FDHPNCIGWTRSGDEENPGLAVVISNGDAGEKTMEVGENYAGKTWRDYTGNRQET---VTI--DED 463 (479)
T ss_pred eEe-----------ecCCCEEEEEEecCCCCccEEEEEECCCCCcEEEEeCccCCCCEeEhhhCCCCCe---EEE--CCC
Confidence 544 2567899999987633 57888887765 44457786655566777776543321 100 012
Q ss_pred CCCeEEEcCCEEEEEE
Q 009902 506 TGSTYNLSPYSSILLE 521 (523)
Q Consensus 506 ~~~~i~l~p~~~~vl~ 521 (523)
+..+++|+|.++.||.
T Consensus 464 G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 464 GWGTFPVNGGSVSVWV 479 (479)
T ss_pred CeEEEEECCceEEEeC
Confidence 3358999999999973
No 21
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.6e-57 Score=494.46 Aligned_cols=433 Identities=20% Similarity=0.289 Sum_probs=305.4
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc-chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~-Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
|||+||+.. |+|++++++ |||||+||||+||||||+++ +. .++|||++++|+++++
T Consensus 753 vHvgsf~~~----------~~~~~l~~~lldYlk~LGvt~IeLmPv~e~--------p~-----~~swGY~~~~y~ap~~ 809 (1224)
T PRK14705 753 VHLGSWRLG----------LGYRELAKELVDYVKWLGFTHVEFMPVAEH--------PF-----GGSWGYQVTSYFAPTS 809 (1224)
T ss_pred EEecccccC----------CchHHHHHHHHHHHHHhCCCEEEECccccC--------CC-----CCCCCCCccccCCcCc
Confidence 699999762 889999998 59999999999999999998 32 3789999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCC
Q 009902 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLN 159 (523)
Q Consensus 80 ~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 159 (523)
+|||. +|||+||++||++||+||||+|+||++. +...+..|++. ..|++.++.......++. ..+|
T Consensus 810 ryGt~--------~dfk~lVd~~H~~GI~VILD~V~nH~~~---d~~~l~~fdg~--~~y~~~d~~~g~~~~Wg~-~~fn 875 (1224)
T PRK14705 810 RFGHP--------DEFRFLVDSLHQAGIGVLLDWVPAHFPK---DSWALAQFDGQ--PLYEHADPALGEHPDWGT-LIFD 875 (1224)
T ss_pred ccCCH--------HHHHHHHHHHHHCCCEEEEEeccccCCc---chhhhhhcCCC--cccccCCcccCCCCCCCC-ceec
Confidence 99997 9999999999999999999999999987 44333445443 344444443222233333 4689
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEcccccc-ccCC---CCCCC----------CChHHHHHHHh--cccccCCeEe
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGT---DGSPL----------NAPPLIRAIAK--DAILSRCKII 223 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~-~~~~---~~~~~----------~~~~~~~~~~~--~~~~~~~~~i 223 (523)
+.+++|+++|++++++|+++|||||||+|++.+| +.+. .|.|. +...+++.+++ ....|++++|
T Consensus 876 ~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~I 955 (1224)
T PRK14705 876 FGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMI 955 (1224)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999987665 3332 13332 34567777776 2357999999
Q ss_pred cccCCCCcCcccC-CCCCcccchhhhhHHHHHHHHHHcCCCCcHH----HHHHHhhCCccccccCCCCCCccEEEEeccC
Q 009902 224 AEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKG----ILATRISGSSDLYRVNKRKPYHSINFIIAHD 298 (523)
Q Consensus 224 ~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD 298 (523)
||.+..-...... ...+..+...||..+++.+.+|+..+..... .+.+.+... +. ....+..|||
T Consensus 956 AEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya---~~-------e~fvl~~SHD 1025 (1224)
T PRK14705 956 AEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYA---FT-------ENFLLPISHD 1025 (1224)
T ss_pred EEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHH---hh-------cCEecccccc
Confidence 9976643222211 1122345699999999988888876543211 111111110 00 1122345899
Q ss_pred CCchh--hhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccc
Q 009902 299 GFTLY--DLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHT 376 (523)
Q Consensus 299 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~ 376 (523)
+.... .++.. . .| ++ . -+...++++++++|+.||+|+||||+|+|..
T Consensus 1026 evvhgk~sl~~k------m-------------------~G---d~-~--~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~ 1074 (1224)
T PRK14705 1026 EVVHGKGSMLRK------M-------------------PG---DR-W--QQLANLRAFLAYQWAHPGKQLIFMGTEFGQE 1074 (1224)
T ss_pred cccccchhHHHh------C-------------------CC---cH-H--HHHHHHHHHHHHHHhcCCcCEEECccccCCC
Confidence 75321 11110 0 01 00 0 1234678899999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCccccCcccc-ccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecC
Q 009902 377 RYGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDN 455 (523)
Q Consensus 377 ~~~~~~~~~~~~~r~~~~W~~~~~-~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~ 455 (523)
..++. ...++|...+. .+..+..++|+|++||+++|+|...+.... .+.|+..+ +.+++|++|.|..+
T Consensus 1075 ~ew~~--------~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~-gf~wi~~~--d~~~~vlaf~R~~~ 1143 (1224)
T PRK14705 1075 AEWSE--------QHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEPG-GFQWINGG--DADRNVLSFIRWDG 1143 (1224)
T ss_pred CCccc--------cccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCCC-ceEEeecC--CCCCcEEEEEEeCC
Confidence 75432 34589988653 346799999999999999999998876543 57887543 56788999999876
Q ss_pred CCCeEEEEEeCCCCcEE-EEcCCCCCCCCeEEEEeCCCCC--CCCCCC------CC--C--CCCCCeEEEcCCEEEEEEe
Q 009902 456 NGADIYLAFNAHDFFVK-VSLPPPPPKRQWFRVVDTNLES--PDDIVP------EG--A--AGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 456 ~~~~~lvv~N~s~~~~~-~~l~~~~~~~~~~~~~~~~~~~--~~~~~~------~~--~--~~~~~~i~l~p~~~~vl~~ 522 (523)
+++.++||+||++.++. +.|.. +..|.|+++++++... .+.... +. . ...+.+|+|||.+++||+.
T Consensus 1144 ~~~~vlvv~Nftp~~~~~y~igv-p~~G~y~eilnsd~~~ygGsg~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~ 1222 (1224)
T PRK14705 1144 DGNPLVCAINFSGGPHKGYTLGV-PAAGAWTEVLNTDHETYGGSGVLNPGSLKATTEGQDGQPATLTVTLPPLGASFFAP 1222 (1224)
T ss_pred CCCEEEEEEcCCCCCccCceECC-CCCCeEEEEEeCchhhcCCCCcCCCCceeecccccCCCCceEEEEecCCEEEEEEE
Confidence 56679999999988776 44422 2368999999997653 111100 00 0 1123578999999999986
Q ss_pred C
Q 009902 523 K 523 (523)
Q Consensus 523 ~ 523 (523)
+
T Consensus 1223 ~ 1223 (1224)
T PRK14705 1223 A 1223 (1224)
T ss_pred C
Confidence 4
No 22
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.5e-54 Score=452.23 Aligned_cols=447 Identities=18% Similarity=0.232 Sum_probs=287.3
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc-chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~-Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
|||++|+. ..++ |+|++++++ |||||+||||+||||||+++ +. ..+|||++++|++|++
T Consensus 401 lHvg~~~~--e~~~-----gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~--------~~-----~~swGY~~~~yfa~~~ 460 (897)
T PLN02960 401 CHVGISGS--EPKI-----SSFKEFTQKVLPHVKKAGYNAIQLIGVQEH--------KD-----YSSVGYKVTNFFAVSS 460 (897)
T ss_pred EecccccC--CCCC-----CCHHHHHHHHHHHHHHcCCCEEEECCcccC--------CC-----CCCCCCCcccCCCccc
Confidence 68999853 3455 999999977 99999999999999999987 22 4689999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCC-cccccCCCCCCcCeeeCCCCCccccCCcCCcC
Q 009902 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTL 158 (523)
Q Consensus 80 ~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 158 (523)
+|||. +||++||++||++||+||||+|+||++. +++ .+..|++. +..||..+.. .+...+++ ..+
T Consensus 461 ~yGtp--------~dfk~LVd~aH~~GI~VILDvV~NH~~~---d~~~~L~~FDG~-~~~Yf~~~~~-g~~~~WG~-~~f 526 (897)
T PLN02960 461 RFGTP--------DDFKRLVDEAHGLGLLVFLDIVHSYAAA---DEMVGLSLFDGS-NDCYFHSGKR-GHHKRWGT-RMF 526 (897)
T ss_pred ccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCC---ccccchhhcCCC-ccceeecCCC-CccCCCCC-ccc
Confidence 99998 9999999999999999999999999999 543 23345443 2234443333 23334443 568
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccEEEEccccccc-cCC-----CC---------CCCCChHHHHHHHh--cccccCCe
Q 009902 159 NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC-RGT-----DG---------SPLNAPPLIRAIAK--DAILSRCK 221 (523)
Q Consensus 159 n~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~-~~~-----~~---------~~~~~~~~~~~~~~--~~~~~~~~ 221 (523)
|+.+|+|+++|++++++|+++|||||||+|+++.|- .+. .| ...++..+++.++. ....|+++
T Consensus 527 Ny~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vi 606 (897)
T PLN02960 527 KYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNII 606 (897)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeE
Confidence 999999999999999999999999999999887652 221 11 12334566777665 24579999
Q ss_pred EecccCCCCcCcccC-CCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCC
Q 009902 222 IIAEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF 300 (523)
Q Consensus 222 ~i~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~ 300 (523)
+|||....-...... ...+..+...|++.+.+.+..++..... ...-...+...... ....+...+.|++|||+.
T Consensus 607 lIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~-r~~~~~~l~~s~~~---~~~~~~~~v~Y~EnHDQV 682 (897)
T PLN02960 607 TIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPD-QEWSMSKIVSTLVK---NKENADKMLSYAENHNQS 682 (897)
T ss_pred EEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcC-CCCChhccEeeecc---CcCCcceEEEEecCcCcc
Confidence 999976433222211 1122335588998888888887765321 01011122221110 123456789999999983
Q ss_pred ch--hhhhhhcccccccCCCCCCCCCCCCCCCCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeeccccccccc
Q 009902 301 TL--YDLVSYNYKHNEANGEGGNDGCNDNFSWNCG-FEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTR 377 (523)
Q Consensus 301 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~ 377 (523)
-. ..+.... .+. .|... .......+.++. .++++ ++++++ .||+|++|||+|+|...
T Consensus 683 v~Gkrsl~~rL------~g~----------~~~k~~~~~~~~lRa~al--~~~~r-llt~~~-~Pg~pLlFMG~EFGh~e 742 (897)
T PLN02960 683 ISGGKSFAEIL------LGK----------NKESSPAVKELLLRGVSL--HKMIR-LITFTL-GGSAYLNFMGNEFGHPE 742 (897)
T ss_pred ccCcccHHHHC------CCc----------hhhhhcccChhhhhhhhH--HHHHH-HHHHHh-CCCCCEeeCccccCChh
Confidence 21 1111100 000 00000 000000010000 01112 233444 48999999999999754
Q ss_pred CCCC-CCC-CCCCCCCccccCcccc-ccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEec
Q 009902 378 YGNN-NSY-GHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHD 454 (523)
Q Consensus 378 ~~~~-~~~-~~~~~r~~~~W~~~~~-~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~ 454 (523)
...- ... ...-+...++|+..+. ....+++++|+|++||+++|+|..+..... . .+.+++|+||.|
T Consensus 743 ~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~-------~--~d~~~~Viaf~R-- 811 (897)
T PLN02960 743 RVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIH-------H--VNDTSMVISFTR-- 811 (897)
T ss_pred hhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceee-------e--ecCCCCEEEEEe--
Confidence 2110 000 0111235689998653 346899999999999999999986543222 1 246778999999
Q ss_pred CCCCeEEEEEeCCCCc----EEEEcCCCCCCCCeEEEEeCCCCC--CCCCC-CC---------CC--CCCCCeEEEcCCE
Q 009902 455 NNGADIYLAFNAHDFF----VKVSLPPPPPKRQWFRVVDTNLES--PDDIV-PE---------GA--AGTGSTYNLSPYS 516 (523)
Q Consensus 455 ~~~~~~lvv~N~s~~~----~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~---------~~--~~~~~~i~l~p~~ 516 (523)
..++||+||+... ..+.+| .+|.|+.+++++... ..... .. .. ...+.+|+|||.+
T Consensus 812 ---~~llvV~NFsp~~~~~~Y~vgvP---~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g~~~si~i~LPp~s 885 (897)
T PLN02960 812 ---GPLLFAFNFHPTNSYEEYEVGVE---EAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGLRNCLELTLPSRS 885 (897)
T ss_pred ---CCeEEEEeCCCCCcCcCceECCC---CCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCCCCceEEEEeCCCE
Confidence 2499999999742 333344 368999999987653 11110 00 00 1123468999999
Q ss_pred EEEEEe
Q 009902 517 SILLEA 522 (523)
Q Consensus 517 ~~vl~~ 522 (523)
++||+.
T Consensus 886 a~v~k~ 891 (897)
T PLN02960 886 AQVYKL 891 (897)
T ss_pred EEEEEE
Confidence 999985
No 23
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-54 Score=432.60 Aligned_cols=467 Identities=35% Similarity=0.573 Sum_probs=361.3
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc-chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~-Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
+|||.|+...+...+ .+| ++++++| |++||+||+|||+||||+|++ +.+..|||.|++|+++-+
T Consensus 235 ~HVrgfS~~E~~v~~--~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~------------~~~~s~GY~~~nFFapss 299 (757)
T KOG0470|consen 235 LHVRGFSSHESKVNT--RGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFG------------HYYASWGYQVTNFFAPSS 299 (757)
T ss_pred EeeccccCCCCcccc--ccc-hhhhhhhhhhHHHHhCccceEEeehhhhh------------hhhhccCcceeEeecccc
Confidence 699999998877765 556 9999999 999999999999999999982 346689999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCC
Q 009902 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLN 159 (523)
Q Consensus 80 ~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 159 (523)
+|||... .+||.|||+||++||..||-|+||||.||++. +...+.. -|++.++..||+..+ ...++..|...+|
T Consensus 300 rYgt~~s--~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~-n~~d~l~-~fdGid~~~Yf~~~~--r~~h~~~~~r~fn 373 (757)
T KOG0470|consen 300 RYGTPES--PCRINEFKELVDKAHSLGIEVLLDVVHSHAAK-NSKDGLN-MFDGIDNSVYFHSGP--RGYHNSWCSRLFN 373 (757)
T ss_pred cccCCCc--ccchHHHHHHHHHHhhCCcEEehhhhhhhccc-CcCCcch-hccCcCCceEEEeCC--ccccccccccccc
Confidence 9999733 45578999999999999999999999999998 3234443 599999999999887 4455566788999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEcccccccc-----------------CCCCCCCCChHHHH-HHHhcccccCCe
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR-----------------GTDGSPLNAPPLIR-AIAKDAILSRCK 221 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~ 221 (523)
+++|+|+++|++.+++|+.||+|||||+|.+..|-+ ...|...+..+.+. -++.+.......
T Consensus 374 ~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~ 453 (757)
T KOG0470|consen 374 YNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTP 453 (757)
T ss_pred CCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccHHHHHHhhcchhhhcCC
Confidence 999999999999999999999999999998888766 22334456667777 566666666666
Q ss_pred -EecccCCCCcCcccCCCCCcccchhhhhHHHHHHHHHHcCCCCcHH-HHHHHhhCCccccccCCCCCCccEEEEeccCC
Q 009902 222 -IIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKG-ILATRISGSSDLYRVNKRKPYHSINFIIAHDG 299 (523)
Q Consensus 222 -~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~ 299 (523)
+|+++|+..+.+..+.+|.+...+.||..++..++.+..+...... ..+..+++....+..+.+.+..+++|+++||+
T Consensus 454 ~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq 533 (757)
T KOG0470|consen 454 GLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQ 533 (757)
T ss_pred cceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccccccceeeeeeccCC
Confidence 9999999999998888999999999998888888888876655444 56777777777777777889999999999999
Q ss_pred CchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCC
Q 009902 300 FTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYG 379 (523)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~ 379 (523)
..+.++.+++.+ ..++..+|+|+..|......+.+.+....+.-+..++...|+|++|||+|+|.+..+
T Consensus 534 ~~v~d~~T~af~-----------~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~ 602 (757)
T KOG0470|consen 534 ALVGDLVTIAFK-----------WLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWL 602 (757)
T ss_pred ccccceeeecch-----------hhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCcccc
Confidence 999887766543 234458899999998876666666654444444444556899999999999999999
Q ss_pred CCCCCCCCCCCCccccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEE-------
Q 009902 380 NNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTL------- 452 (523)
Q Consensus 380 ~~~~~~~~~~r~~~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R------- 452 (523)
+.+.++......-.+|.........++.+.+.|+.+|+++..|-....+....+.|+... ...+.+++|.|
T Consensus 603 d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k--~e~~~~i~fer~~~~~vf 680 (757)
T KOG0470|consen 603 DFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLK--HEADEVIVFERGPLLFVF 680 (757)
T ss_pred CCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhcccccccccccccc--chhhheeeeccCCeEEEE
Confidence 988888888777777755554556889999999999999877766555544455555221 23455555554
Q ss_pred --ecCC-CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCC
Q 009902 453 --HDNN-GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPE 501 (523)
Q Consensus 453 --~~~~-~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (523)
.... ...+.|.+|.......|-+|..+..+.|..+.++....+.+....
T Consensus 681 n~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~ 732 (757)
T KOG0470|consen 681 NFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSE 732 (757)
T ss_pred EecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccC
Confidence 2221 245555666666666666666666777777777766654443333
No 24
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.7e-52 Score=438.12 Aligned_cols=449 Identities=19% Similarity=0.257 Sum_probs=297.2
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHh-cchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQ-KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~-~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
+||++|+. ...+ |+++++++ +|||||+||||+||||||+++ +. +.+|||++++|+++++
T Consensus 235 ~Hvg~~~~--~~~~-----gty~~~~~~~L~ylk~LG~t~I~LmPi~e~--------~~-----~~~wGY~~~~~fa~~~ 294 (758)
T PLN02447 235 AHVGMSSE--EPKV-----NSYREFADDVLPRIKALGYNAVQLMAIQEH--------AY-----YGSFGYHVTNFFAVSS 294 (758)
T ss_pred EeCCcccC--CCCC-----CCHHHHHHHHHHHHHHcCCCEEEECCcccc--------CC-----CCCCCcCcccCccccc
Confidence 58998853 2234 99999875 599999999999999999998 21 4789999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCC
Q 009902 80 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLN 159 (523)
Q Consensus 80 ~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 159 (523)
+|||. +|||+||++||++||+||||+|+||++.+.. ..+..|++. +..||+.++.+ +...++ ...+|
T Consensus 295 ~~Gtp--------~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~--~gl~~fDg~-~~~Yf~~~~~g-~~~~w~-~~~~N 361 (758)
T PLN02447 295 RSGTP--------EDLKYLIDKAHSLGLRVLMDVVHSHASKNTL--DGLNGFDGT-DGSYFHSGPRG-YHWLWD-SRLFN 361 (758)
T ss_pred ccCCH--------HHHHHHHHHHHHCCCEEEEEecccccccccc--ccccccCCC-CccccccCCCC-CcCcCC-Cceec
Confidence 99998 9999999999999999999999999998321 112244433 24566655432 222233 23699
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEcccccccc-------CCCC---------CCCCChHHHHHHHh--cccccCCe
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR-------GTDG---------SPLNAPPLIRAIAK--DAILSRCK 221 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~-------~~~~---------~~~~~~~~~~~~~~--~~~~~~~~ 221 (523)
+.+++|+++|++++++|+++|||||||||++++|-- ++.+ ...++..+++.++. ....|+++
T Consensus 362 ~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~ 441 (758)
T PLN02447 362 YGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAV 441 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeE
Confidence 999999999999999999999999999999887731 1111 12234456666665 34679999
Q ss_pred EecccCCCCcCccc-CCCCCcccchhhhhHHHHHHHHHHcCCCC---cHHHHHHHhhCCccccccCCCCCCccEEEEecc
Q 009902 222 IIAEPWDCRGLYLV-GKFPNWDRWAEWNGKYRDDLRKFIKGDPG---MKGILATRISGSSDLYRVNKRKPYHSINFIIAH 297 (523)
Q Consensus 222 ~i~E~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nH 297 (523)
+|||.+...+.... -...+..+...|+..+.+...+++..... ....+...+.. .+.....+.|.+||
T Consensus 442 ~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~--------r~~~E~~I~y~eSH 513 (758)
T PLN02447 442 TIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTN--------RRYTEKCVAYAESH 513 (758)
T ss_pred EEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhc--------ccccCceEeccCCc
Confidence 99997654322221 11122345699999999999988876432 22233333321 01224678889999
Q ss_pred CCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCe-eeeecccccccc
Q 009902 298 DGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGT-PMMLMGDEYGHT 376 (523)
Q Consensus 298 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~-P~iy~G~E~g~~ 376 (523)
|+....+....-. +..++. .+ ...+......+........|++.+++|++||. +++|||.|+|..
T Consensus 514 Devv~Gkksl~~~---l~d~~m---------y~--~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ 579 (758)
T PLN02447 514 DQALVGDKTIAFW---LMDKEM---------YD--GMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHP 579 (758)
T ss_pred CeeecCcchhHhh---hcchhh---------hh--cCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCc
Confidence 9875533221000 000000 00 00010000011111233457778899999999 699999999986
Q ss_pred cCCC----CCCCCCCCCCCccccCccccc---cchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEE
Q 009902 377 RYGN----NNSYGHDTAINNFQWGQLETK---KNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLA 449 (523)
Q Consensus 377 ~~~~----~~~~~~~~~r~~~~W~~~~~~---~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~a 449 (523)
...+ .+.++.. ..+++|+..+.. ...+.+|+|.|++|++++|+|..+- .|+.. .+.+++|+|
T Consensus 580 ew~Dfpr~~n~ws~~--~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~-------~~i~~--~d~~~~Via 648 (758)
T PLN02447 580 EWIDFPREGNGWSYD--KCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEH-------QYVSR--KDEGDKVIV 648 (758)
T ss_pred hhccCcccccccCcc--cccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCC-------ceeee--ecCCCCEEE
Confidence 3111 1112211 334799876532 4679999999999999999997543 22211 257889999
Q ss_pred EEEecCCCCeEEEEEeCCCC----cEEEEcCCCCCCCCeEEEEeCCCCCCCCC--CCC---------CC--CCCCCeEEE
Q 009902 450 FTLHDNNGADIYLAFNAHDF----FVKVSLPPPPPKRQWFRVVDTNLESPDDI--VPE---------GA--AGTGSTYNL 512 (523)
Q Consensus 450 f~R~~~~~~~~lvv~N~s~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~--~~~~~~i~l 512 (523)
|.| + .++||+||++. ...+.+|. .|+|+++++++...-... ... .. ...+.+|.|
T Consensus 649 f~R----~-~ll~V~NF~p~~s~~~Y~igvp~---~G~y~~ilnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~i 720 (758)
T PLN02447 649 FER----G-DLVFVFNFHPTNSYSDYRVGCDK---PGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYA 720 (758)
T ss_pred EEe----C-CeEEEEeCCCCCCCCCcEECCCC---CCeEEEEECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEe
Confidence 999 2 39999999963 23444443 799999999986642111 000 00 112346899
Q ss_pred cCCEEEEEEeC
Q 009902 513 SPYSSILLEAK 523 (523)
Q Consensus 513 ~p~~~~vl~~~ 523 (523)
||.+++||+.+
T Consensus 721 P~~~~~vl~~~ 731 (758)
T PLN02447 721 PSRTAVVYAPV 731 (758)
T ss_pred CCceEEEEEEC
Confidence 99999999864
No 25
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=3.5e-53 Score=425.17 Aligned_cols=397 Identities=13% Similarity=0.178 Sum_probs=272.3
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
+.++||.|++++|+ |||+|++++ ||++ ||++|||+|+|++ + .++||+|+||++|||+
T Consensus 3 v~lity~Ds~g~gl-----gdl~g~l~~--yL~~-~v~~i~LlPffps----------~-----sD~GYdv~DY~~VDP~ 59 (470)
T TIGR03852 3 AMLITYADSLGKNL-----KELNKVLEN--YFKD-AVGGVHLLPFFPS----------T-----GDRGFAPMDYTEVDPA 59 (470)
T ss_pred ceEEEecCCCCCCh-----hhHHHHHHH--HHHH-hCCEEEECCCCcC----------C-----CCCCcCchhhceeCcc
Confidence 45789999999999 999999999 9999 7999999999988 3 4679999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCC--C--CCcCee-----eCCC----C-
Q 009902 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI--D--NKVYYM-----VDGT----G- 146 (523)
Q Consensus 81 ~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~--~--~~~~~~-----~~~~----~- 146 (523)
|||+ +||++|+++ |+||+|+|+||||. +||||+.+... + ..+||. |.+. .
T Consensus 60 ~Gt~--------~Df~~L~~~-----~kvmlDlV~NHtS~---~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d 123 (470)
T TIGR03852 60 FGDW--------SDVEALSEK-----YYLMFDFMINHISR---QSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQED 123 (470)
T ss_pred cCCH--------HHHHHHHHh-----hhHHhhhccccccc---chHHHHHHHhcCCCCCccceEEecccccCCCCccccc
Confidence 9998 999999997 89999999999999 99999987532 2 378887 3210 0
Q ss_pred --------------C-----------ccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCC
Q 009902 147 --------------Q-----------LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 201 (523)
Q Consensus 147 --------------~-----------~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~ 201 (523)
. +..|...|||||++||+|+++|.+++++|+ +.||||||+||+.++++.. |+.
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~-Gt~ 201 (470)
T TIGR03852 124 VDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKL-GTN 201 (470)
T ss_pred cccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccC-CCC
Confidence 0 112445699999999999999999999999 7999999999999999987 777
Q ss_pred CCC-----hHHHHHHHhcccccCCeEecccCCCCcC-cccCCCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhC
Q 009902 202 LNA-----PPLIRAIAKDAILSRCKIIAEPWDCRGL-YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISG 275 (523)
Q Consensus 202 ~~~-----~~~~~~~~~~~~~~~~~~i~E~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 275 (523)
|.. ..+++.+++-...+++.+++|+++.-.. +..++ .+.|.+.|.-...-+..-..+....+...+..
T Consensus 202 c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~~~~~~~~~gd------e~~mvY~F~lppl~l~al~~~~~~~l~~wl~~ 275 (470)
T TIGR03852 202 DFFVEPEIWELLDEVRDILAPTGAEILPEIHEHYTIQFKIAE------HGYYVYDFALPMLVLYSLYSGKTNRLADWLRK 275 (470)
T ss_pred cccCChhHHHHHHHHHHHhccCCCEEEeHhhhhccccccccc------ceeEEccCccchhhHHHhhccCHHHHHHHHHh
Confidence 743 3455555554567899999999752211 11121 14444444433333322222333444444442
Q ss_pred CccccccCCCCCCccEEEEeccCCCchhhhhhh---ccc-----ccccCCCC-------CCCCCCCCCCCCCCCCCCCCh
Q 009902 276 SSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSY---NYK-----HNEANGEG-------GNDGCNDNFSWNCGFEGETDD 340 (523)
Q Consensus 276 ~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~---~~~-----~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~ 340 (523)
.|....||++|||+..+.++-+. .+. .-...|.. ..++.-..+.-|+....
T Consensus 276 ----------~p~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~---- 341 (470)
T TIGR03852 276 ----------SPMKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYS---- 341 (470)
T ss_pred ----------CcccceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHH----
Confidence 12244699999999887442111 000 00001110 00111111111211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCC---CCCCCCCCCCCccccCccc---cccchHHHHHHHHHH
Q 009902 341 ASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN---NNSYGHDTAINNFQWGQLE---TKKNSHYRFFSEVIK 414 (523)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~---~~~~~~~~~r~~~~W~~~~---~~~~~~~~~~~~L~~ 414 (523)
++.. ..+++.+|.+++|++||||.||||+|+|+.+... +...++. .+.-.|+..+ .-...+.+-+.+||+
T Consensus 342 -aL~~-~~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~--Inr~~~~~~~i~~~l~~~v~~~L~~li~ 417 (470)
T TIGR03852 342 -ALGD-DDQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGRN--INRHYYTLEEIAEEVKRPVVAKLLNLLR 417 (470)
T ss_pred -HhCC-CHHHHHHHHHHHHcCCCCceEEechhhcCCchHHHHHhcCCCCC--CCCCCCCHHHHHHHHhhHHHHHHHHHHH
Confidence 1111 1368899999999999999999999999965321 1112333 3444554433 112357777777999
Q ss_pred HHhcCcCcCc-cCcCCcCceeeeccccCCCCCcEEEEEEecCC-CCeEEEEEeCCCCcEEE
Q 009902 415 FRQSRRVFGR-EDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDFFVKV 473 (523)
Q Consensus 415 lRk~~paL~~-g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~-~~~~lvv~N~s~~~~~~ 473 (523)
+|+++||++. |.+. +. ..++.||++.|+..+ ++++++++|+++.++++
T Consensus 418 ~R~~~~aF~~~g~~~-~~----------~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 418 FRNTSKAFDLDGSID-IE----------TPSENQIEIVRTNKDGGNKAILTANLKTKTFTI 467 (470)
T ss_pred HHhhCcccCCCCceE-ec----------CCCCcEEEEEEEcCCCCceEEEEEecCCCcEec
Confidence 9999999998 6554 41 578899999997764 68999999999988654
No 26
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=5.1e-52 Score=418.43 Aligned_cols=327 Identities=18% Similarity=0.234 Sum_probs=223.4
Q ss_pred CCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC-CCCCCCCCCCCchHHHHH
Q 009902 18 IRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM-SRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 18 ~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~~~~~dl~ 96 (523)
.+|++++|++|||||++||||+|||+|++++ ..+|||++.||++++ ++|||+ +||+
T Consensus 39 ~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s---------------~s~hGY~~~D~y~ld~~~fGt~--------~elk 95 (428)
T PLN00196 39 NGGWYNFLMGKVDDIAAAGITHVWLPPPSHS---------------VSEQGYMPGRLYDLDASKYGNE--------AQLK 95 (428)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCC---------------CCCCCCCccccCCCCcccCCCH--------HHHH
Confidence 4589999999999999999999999999986 356899999999999 699998 9999
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCC--CCcccccCCCC---CCcCeeeC----------CCCCcc--ccCCcCCcCC
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDA--NPYTTSFRGID---NKVYYMVD----------GTGQLL--NYAGCGNTLN 159 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~--~~~~~~~~~~~---~~~~~~~~----------~~~~~~--~~~~~~~dln 159 (523)
+||++||++||+||+|+|+||++.+..+ .+|. .+.+.. ...|+... ..+.+. .....+||||
T Consensus 96 ~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn 174 (428)
T PLN00196 96 SLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYC-LFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDID 174 (428)
T ss_pred HHHHHHHHCCCEEEEEECccCcccccccCCCceE-ECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccC
Confidence 9999999999999999999999973211 1222 222211 12333210 001110 0123479999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCCcCcccCCCC
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFP 239 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~ 239 (523)
++||+|+++|++++++|++++||||||+|+|++++.+ +++.+.+. ..| .++|||.|........+...
T Consensus 175 ~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~----------f~~~~v~~-~~p-~f~VGE~W~~~~~~~~~~~~ 242 (428)
T PLN00196 175 HLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAE----------VAKVYIDG-TEP-SFAVAEIWTSMAYGGDGKPE 242 (428)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHH----------HHHHHHHc-cCC-cEEEEEEeccccccccCCcc
Confidence 9999999999999998887899999999999999544 46665543 345 78999999863211111000
Q ss_pred C-------------------cccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCC
Q 009902 240 N-------------------WDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF 300 (523)
Q Consensus 240 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~ 300 (523)
. ....+.+++.+...+...+.+. . ..+ +.........-...|..++|||+|||+.
T Consensus 243 ~~~~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~--~-~~l---~~~~~~~~~~~~~~P~~aVtFvdNHDT~ 316 (428)
T PLN00196 243 YDQNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGE--L-WRL---RGADGKAPGVIGWWPAKAVTFVDNHDTG 316 (428)
T ss_pred ccchhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCC--c-hhh---hhhcccCcchhhcChhhceeeccCCCCc
Confidence 0 0000122333322222222111 0 000 0000000001123567899999999998
Q ss_pred chhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCC
Q 009902 301 TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN 380 (523)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~ 380 (523)
|+..+... ...++++|++++||+||+||||||+=
T Consensus 317 r~~~~~~~--------------------------------------~~~~~~lAyA~iLT~pG~P~IyYg~~-------- 350 (428)
T PLN00196 317 STQHMWPF--------------------------------------PSDKVMQGYAYILTHPGNPCIFYDHF-------- 350 (428)
T ss_pred cccccCCC--------------------------------------ccchHHHHHHHHHcCCCcceEeeCCC--------
Confidence 86432210 02256899999999999999999941
Q ss_pred CCCCCCCCCCCccccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeE
Q 009902 381 NNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADI 460 (523)
Q Consensus 381 ~~~~~~~~~r~~~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~ 460 (523)
.+| .+.+.+++|+++||+++++..|++..+ ..+++++++.| ++.+
T Consensus 351 ------------~~~--------~~~~~i~~Li~~Rk~~~~~~~g~~~~~-----------~a~~d~yv~~~----~~~~ 395 (428)
T PLN00196 351 ------------FDW--------GLKEEIAALVSIRNRNGITPTSELRIM-----------EADADLYLAEI----DGKV 395 (428)
T ss_pred ------------cCc--------cHHHHHHHHHHHHHhCCCcCCccEEEE-----------EecCCEEEEEE----CCEE
Confidence 133 255689999999999999999988765 35678999999 5789
Q ss_pred EEEEeCC
Q 009902 461 YLAFNAH 467 (523)
Q Consensus 461 lvv~N~s 467 (523)
+|.+|..
T Consensus 396 ~~~i~~~ 402 (428)
T PLN00196 396 IVKIGSR 402 (428)
T ss_pred EEEECCC
Confidence 9999875
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.5e-51 Score=409.56 Aligned_cols=278 Identities=30% Similarity=0.461 Sum_probs=199.2
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
|||+||++||||||+||||+|||+||+++ + ..+|||+|+||++|||+|||+ +||++||
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~----------~----~~~~gY~~~d~~~vd~~~Gt~--------~d~~~Lv 58 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFES----------P----NGYHGYDPSDYYAVDPRFGTM--------EDFKELV 58 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EES----------S----SSTTTTSESEEEEESTTTBHH--------HHHHHHH
T ss_pred CCHHHHHHhhHHHHHcCCCceeccccccc----------c----cccccccceeeeccccccchh--------hhhhhhh
Confidence 89999999999999999999999999997 2 268899999999999999998 9999999
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCcccccCC---CCCCcCeeeCC-----CCCc---------c--------ccCCc
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRG---IDNKVYYMVDG-----TGQL---------L--------NYAGC 154 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~---------~--------~~~~~ 154 (523)
++||++||+||||+|+||++. .|+|+..... ...++||.|.+ +..+ . .+...
T Consensus 59 ~~~h~~gi~VilD~V~NH~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (316)
T PF00128_consen 59 DAAHKRGIKVILDVVPNHTSD---DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSD 135 (316)
T ss_dssp HHHHHTTCEEEEEEETSEEET---TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTT
T ss_pred hccccccceEEEeeecccccc---ccccccccccccccccccceeecccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999 8998643221 12467777631 1111 1 13445
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhc--ccccCCeEecccCCCCcC
Q 009902 155 GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEPWDCRGL 232 (523)
Q Consensus 155 ~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~E~~~~~~~ 232 (523)
+++||++||+||++|++++++|+ ++||||||||++++++.+ +++++... ...|+++++||.|.....
T Consensus 136 ~~dln~~n~~v~~~i~~~~~~w~-~~giDGfR~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~E~~~~~~~ 204 (316)
T PF00128_consen 136 LPDLNYENPEVREYIIDVLKFWI-EEGIDGFRLDAAKHIPKE----------FWKEFRDEVKEEKPDFFLIGEVWGGDNE 204 (316)
T ss_dssp SEEBETTSHHHHHHHHHHHHHHH-HTTESEEEETTGGGSSHH----------HHHHHHHHHHHHHTTSEEEEEESSSSHH
T ss_pred cchhhhhhhhhhhhhcccccchh-hceEeEEEEccccccchh----------hHHHHhhhhhhhccccceeeeeccCCcc
Confidence 78999999999999999999999 688999999999999664 45554442 234899999999976531
Q ss_pred ----cc-cCCCCCcccchhhhhHHHHHHHHH---HcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhh
Q 009902 233 ----YL-VGKFPNWDRWAEWNGKYRDDLRKF---IKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYD 304 (523)
Q Consensus 233 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~ 304 (523)
+. ..... .. ..++.......... ..........+...+...... ...+...++|++|||+.|+..
T Consensus 205 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~f~~nHD~~r~~~ 277 (316)
T PF00128_consen 205 DLRQYAYDGYFD-LD--SVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSS----YPDPYRAVNFLENHDTPRFAS 277 (316)
T ss_dssp HHHHHHHHGTTS-HS--EEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHH----STTGGGEEEESSHTTSSTHHH
T ss_pred ccchhhhccccc-cc--hhhcccccccccchhhhhccccchhhhhhhhhhhhhhh----hcccceeeecccccccccchh
Confidence 10 01111 00 11222222222222 223322233333333321111 112467899999999998655
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccC
Q 009902 305 LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY 378 (523)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~ 378 (523)
.+.. ...++++|++++||+||+|+||||+|+||++.
T Consensus 278 ~~~~--------------------------------------~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 278 RFGN--------------------------------------NRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp HTTT--------------------------------------HHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred hhcc--------------------------------------cchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 4321 12278999999999999999999999999874
No 28
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=1e-49 Score=402.51 Aligned_cols=399 Identities=15% Similarity=0.210 Sum_probs=271.8
Q ss_pred cCCCCCCCCCCCCCCCccHHhHHhcch-HHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCC
Q 009902 4 RAFTGDESSGLDPEIRGSYLGLIQKIP-HLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYA 82 (523)
Q Consensus 4 ~~f~~~~~~g~~~~~~Gd~~gl~~~Ld-yl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~G 82 (523)
-+|.|++++ |||+||+++|| ||++| |++|||+|+|+.. ++ .++||+|+||++|||+||
T Consensus 8 itY~Ds~~~-------GdL~gl~~kLd~yL~~l-v~~vhllPff~ps-------p~------sD~GYdv~DY~~VDP~fG 66 (495)
T PRK13840 8 ITYADRLGD-------GGLKSLTALLDGRLDGL-FGGVHILPFFYPI-------DG------ADAGFDPIDHTKVDPRLG 66 (495)
T ss_pred EEeccCCCC-------CCHhHHHHHHHHHHHHH-hCeEEECCCccCC-------CC------CCCCCCCcChhhcCcccC
Confidence 467777653 89999999999 59999 9999999999541 22 467999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccC-C-C--CCCcCeeeCCC-------------
Q 009902 83 AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFR-G-I--DNKVYYMVDGT------------- 145 (523)
Q Consensus 83 t~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~------------- 145 (523)
|+ +||++|++ ||+||+|+|+||||. +||||+.+. + . ...+||.|.+.
T Consensus 67 t~--------eDf~~L~~-----giklmlDlV~NHtS~---~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~ 130 (495)
T PRK13840 67 DW--------DDVKALGK-----THDIMADLIVNHMSA---ESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAG 130 (495)
T ss_pred CH--------HHHHHHHh-----CCeEEEEECCCcCCC---CcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCccccc
Confidence 98 99999984 999999999999999 999999873 2 2 23788887321
Q ss_pred ------CC---------------ccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCC
Q 009902 146 ------GQ---------------LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNA 204 (523)
Q Consensus 146 ------~~---------------~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~ 204 (523)
+. +..|...|||||++||+|+++|.+++++|+ +.||||||+||+.++++.. |+.|..
T Consensus 131 if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~-gt~c~~ 208 (495)
T PRK13840 131 IYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKA-GTSCFM 208 (495)
T ss_pred ccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCC-CCCcCC
Confidence 10 112445699999999999999999999999 7899999999999999886 777764
Q ss_pred hH----HHHHHHhcccccCCeEecccCCCCcCc-ccCCCCCcccchhhhhHHHHHHHHHH-cCCCCcHHHHHHHhhCCcc
Q 009902 205 PP----LIRAIAKDAILSRCKIIAEPWDCRGLY-LVGKFPNWDRWAEWNGKYRDDLRKFI-KGDPGMKGILATRISGSSD 278 (523)
Q Consensus 205 ~~----~~~~~~~~~~~~~~~~i~E~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 278 (523)
.+ +++.++.-....+..+|+|.|...+.. ..++ .....+|+.+...+...+ .++... +...+..
T Consensus 209 ~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~~~~~~~~----e~~~vYnF~Lp~ll~~aL~~~~~~~---L~~~l~~--- 278 (495)
T PRK13840 209 IPETFEFIDRLAKEARARGMEVLVEIHSYYKTQIEIAK----KVDRVYDFALPPLILHTLFTGDVEA---LAHWLEI--- 278 (495)
T ss_pred ChHHHHHHHHHHHHhhhcCCEEEEeCccccCccccccc----cccEEecchhhHHHHHHHHhCCchH---HHHHHHh---
Confidence 43 445554422223567899987643211 1111 123667777766655544 343222 2222222
Q ss_pred ccccCCCCCCccEEEEeccCCCchhhh----------hhhcccc-------cccCCCCC-CCCCC----CCCCCCCCCCC
Q 009902 279 LYRVNKRKPYHSINFIIAHDGFTLYDL----------VSYNYKH-------NEANGEGG-NDGCN----DNFSWNCGFEG 336 (523)
Q Consensus 279 ~~~~~~~~~~~~~~f~~nHD~~~~~~~----------~~~~~~~-------~~~~~~~~-~~~~~----~~~~~~~~~~g 336 (523)
.|..+.||++|||...+.++ +...+.. ....+... ..+.+ ..+.-||+...
T Consensus 279 -------~p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~ 351 (495)
T PRK13840 279 -------RPRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYD 351 (495)
T ss_pred -------CCCccEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHH
Confidence 13455799999999887221 1100000 00111110 11111 11222333222
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCC---CCCCCCCCCCCccccCccccc-cchHHHHHHHH
Q 009902 337 ETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN---NNSYGHDTAINNFQWGQLETK-KNSHYRFFSEV 412 (523)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~---~~~~~~~~~r~~~~W~~~~~~-~~~~~~~~~~L 412 (523)
+-.. ...++.++.+++|++||||.||||+|+|..+.-. ....++.-.|..++|+..+.. ...+++-+++|
T Consensus 352 Al~~------~d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~l 425 (495)
T PRK13840 352 ALGR------NDQDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNAL 425 (495)
T ss_pred HhcC------CcHHHHHHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1110 0237889999999999999999999999865321 112355666788888866533 35699999999
Q ss_pred HHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCC
Q 009902 413 IKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPP 477 (523)
Q Consensus 413 ~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~ 477 (523)
+++|+++|||+ |++... ..++.-++.+|..+ .....+.+|+......+....
T Consensus 426 i~~R~~~~aF~-~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 477 (495)
T PRK13840 426 IRFRNEHPAFD-GAFSYA-----------ADGDTSLTLSWTAG-DSSASLTLDFAPKKGLITALD 477 (495)
T ss_pred HHHHhcCcccC-ceEEEe-----------cCCCCeEEEEEecC-CceEEEEEEcccceEEEEecc
Confidence 99999999995 554322 35677888888776 677788889988776666543
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=9.8e-49 Score=389.51 Aligned_cols=316 Identities=17% Similarity=0.209 Sum_probs=215.2
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
.-+++|+++||||++||||+|||+|++++ ..+|||++.||+++|++|||+ +||++||
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~---------------~~~~GY~~~d~y~~~~~~Gt~--------~el~~li 82 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQS---------------LAPEGYLPQNLYSLNSAYGSE--------HLLKSLL 82 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcC---------------CCCCCCCcccccccCcccCCH--------HHHHHHH
Confidence 46899999999999999999999999987 245899999999999999998 9999999
Q ss_pred HHHHHCCCEEEEeeccccccCCCC-CCCcccccCCCCCCcCeeeC---CCC-----CccccCCcCCcCCCCCHHHHHHHH
Q 009902 100 KALHGAGIEVILDVVYNHTNEADD-ANPYTTSFRGIDNKVYYMVD---GTG-----QLLNYAGCGNTLNCNHPVVMELIL 170 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~dln~~~p~v~~~i~ 170 (523)
++||++||+||+|+|+||++.... ...++..+.+. +.+|.... ..+ ........+||||++||+||++|+
T Consensus 83 ~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~-~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~ 161 (401)
T PLN02361 83 RKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGI-PLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDII 161 (401)
T ss_pred HHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCC-cCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHH
Confidence 999999999999999999964211 11122222221 01111110 001 111123347999999999999999
Q ss_pred HHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecccCCCCcCcc-c--CCCC--------
Q 009902 171 DSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYL-V--GKFP-------- 239 (523)
Q Consensus 171 ~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~-~--~~~~-------- 239 (523)
+++++|++++||||||+|++++++.+ +++++.+. ..| +++|||.|.....-. . -.+.
T Consensus 162 ~~~~wl~~~~GiDGfRlDavk~~~~~----------f~~~~~~~-~~p-~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l 229 (401)
T PLN02361 162 GWLIWLRNDVGFQDFRFDFAKGYSAK----------FVKEYIEA-AKP-LFSVGEYWDSCNYSGPDYRLDYNQDSHRQRI 229 (401)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCHH----------HHHHHHHh-hCC-eEEEEEEecCCCcCCcccccchhhhhHHHHH
Confidence 99987776699999999999999644 56776653 334 789999997631100 0 0000
Q ss_pred ----C--cccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhccccc
Q 009902 240 ----N--WDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHN 313 (523)
Q Consensus 240 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~ 313 (523)
. ....+.++++++..+++.+.+. ...+...+.....+ ....|..+|+||+|||+.|...+..
T Consensus 230 ~~~~~~~~~~~~~fDF~l~~~l~~a~~~~---~~~l~~~~~~~~~~---~~~~p~~aVTFvdNHDt~r~~~~~~------ 297 (401)
T PLN02361 230 VNWIDGTGGLSAAFDFTTKGILQEAVKGQ---WWRLRDAQGKPPGV---MGWWPSRAVTFIDNHDTGSTQAHWP------ 297 (401)
T ss_pred HHHHHhcCCcceeecHHHHHHHHHHHhhh---HHHHhhhhcCCcch---hhcChhhceEecccCcCcchhhccC------
Confidence 0 0012345555555555554211 11111111101111 1235678999999999987533211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCCCCCCCCCcc
Q 009902 314 EANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNF 393 (523)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~ 393 (523)
....+.++|++++||.||+||||||+= .
T Consensus 298 --------------------------------~~~~~~~~AyA~iLT~pG~P~Vyyg~~--------------------~ 325 (401)
T PLN02361 298 --------------------------------FPSDHIMEGYAYILTHPGIPTVFYDHF--------------------Y 325 (401)
T ss_pred --------------------------------CchHHHHHHHHHHHCCCCcCeEeeccc--------------------c
Confidence 013467889999999999999999971 1
Q ss_pred ccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEE
Q 009902 394 QWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTL 452 (523)
Q Consensus 394 ~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R 452 (523)
+|+ .++.+.+++|++|||++++++.|....+ ..++++++-.-
T Consensus 326 ~~~------~~~~~~I~~Li~lRk~~~~~~~s~~~i~-----------~a~~~~y~a~i 367 (401)
T PLN02361 326 DWG------GSIHDQIVKLIDIRKRQDIHSRSSIRIL-----------EAQSNLYSAII 367 (401)
T ss_pred CCC------hHHHHHHHHHHHHHHhCCCCCCCcEEEE-----------EecCCeEEEEE
Confidence 343 2688999999999999999999887654 35566666665
No 30
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-49 Score=402.79 Aligned_cols=438 Identities=22% Similarity=0.347 Sum_probs=297.4
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
+||.||+. + . .-|+++..+++|||||+||||+|.||||.+. |+ ..+|||+++.||++.++
T Consensus 150 lHvGs~~~-~-~-----~~~~~e~a~~llpYl~elG~T~IELMPv~e~--------p~-----~~sWGYq~~g~yAp~sr 209 (628)
T COG0296 150 LHVGSFTP-D-R-----FLGYFELAIELLPYLKELGITHIELMPVAEH--------PG-----DRSWGYQGTGYYAPTSR 209 (628)
T ss_pred EEeeeccC-C-C-----CcCHHHHHHHHhHHHHHhCCCEEEEcccccC--------CC-----CCCCCCCcceecccccc
Confidence 69999988 2 2 2399999999999999999999999999999 44 48999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeee-CCCCCccccCCcCCcCC
Q 009902 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV-DGTGQLLNYAGCGNTLN 159 (523)
Q Consensus 81 ~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dln 159 (523)
|||. +|||+||++||++||.||||+|+||+++ +..+...|++. .+|.. ++.......++. --.|
T Consensus 210 yGtP--------edfk~fVD~aH~~GIgViLD~V~~HF~~---d~~~L~~fdg~---~~~e~~~~~~~~~~~Wg~-~i~~ 274 (628)
T COG0296 210 YGTP--------EDFKALVDAAHQAGIGVILDWVPNHFPP---DGNYLARFDGT---FLYEHEDPRRGEHTDWGT-AIFN 274 (628)
T ss_pred CCCH--------HHHHHHHHHHHHcCCEEEEEecCCcCCC---CcchhhhcCCc---cccccCCcccccCCCccc-chhc
Confidence 9998 9999999999999999999999999999 77777777655 23322 333333333322 2235
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCC----CCC----------CCCChHHHHHHHh--cccccCCeEe
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGT----DGS----------PLNAPPLIRAIAK--DAILSRCKII 223 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~----~~~----------~~~~~~~~~~~~~--~~~~~~~~~i 223 (523)
+..++||++|++++++|+++|+|||||+||+..|.... .+. ..+..++++...+ ....|+.+.|
T Consensus 275 ~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~i 354 (628)
T COG0296 275 YGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTI 354 (628)
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceee
Confidence 56999999999999999999999999999988885331 011 1122233333333 2446888999
Q ss_pred cccCCCCcCcccC-CCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCC--
Q 009902 224 AEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF-- 300 (523)
Q Consensus 224 ~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~-- 300 (523)
+|.|..-...... ...+..+...||+........|+.........-...+.... ...+...+.|+.|||+.
T Consensus 355 aeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~------~y~~se~~~l~~sHDevvh 428 (628)
T COG0296 355 AEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGL------LYAFSENVVLPLSHDEVVH 428 (628)
T ss_pred eeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccccccCCCcccc------ccccceeEeccccccceee
Confidence 9988765322111 11112234778888666666666444332222111111110 01234567788999985
Q ss_pred chhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeeecccccccccCCC
Q 009902 301 TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN 380 (523)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~ 380 (523)
....+..-. .| ........+++++++|++.||+|++|||+|+|...+.+
T Consensus 429 Gk~sl~~rm-------------------------~g------~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~ 477 (628)
T COG0296 429 GKRSLGERM-------------------------PG------DAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWN 477 (628)
T ss_pred cccchhccC-------------------------Cc------chhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCc
Confidence 222111100 00 11224568889999999999999999999999988665
Q ss_pred CCCCCCCCCCCccccCcccc---c--cchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEe--
Q 009902 381 NNSYGHDTAINNFQWGQLET---K--KNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLH-- 453 (523)
Q Consensus 381 ~~~~~~~~~r~~~~W~~~~~---~--~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~-- 453 (523)
. ....+|..... . .+.+..+.+.|.++-+..+.+...++... ++.|.... +..++|++|.|.
T Consensus 478 ~--------~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~-~~~W~~~~--~~~~~v~af~R~l~ 546 (628)
T COG0296 478 F--------FSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQPE-GFEWIDAD--DAENSVLAFYRRLL 546 (628)
T ss_pred c--------cCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhccc-CCceeecC--chhhhHHHHHHHHh
Confidence 3 33457744432 2 45788899999988888899988777653 68888553 344489999995
Q ss_pred cCCCCeEEEEEeCCCCcE-EEEcCCCCCCCCeEEEEeCCCCCC--CC-------CCCCCC----CCCCCeEEEcCCEEEE
Q 009902 454 DNNGADIYLAFNAHDFFV-KVSLPPPPPKRQWFRVVDTNLESP--DD-------IVPEGA----AGTGSTYNLSPYSSIL 519 (523)
Q Consensus 454 ~~~~~~~lvv~N~s~~~~-~~~l~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~----~~~~~~i~l~p~~~~v 519 (523)
...++.+++++|++..+. .+.++.. .+++|+.++++..... .. +..+.. ...+.+++|||.++++
T Consensus 547 ~~~~~~lv~~~n~~~~~~~~y~~~~~-~~g~~~~~lntd~~~~ggs~~~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~ 625 (628)
T COG0296 547 ALRHEHLVVVNNFTPVPRVDYRVGVP-VAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALV 625 (628)
T ss_pred hcCCceEEEEeCCCCCcccccccCCc-ccccEEEeccchHHHhcCCccccccceecceeeeccCcceeeEEecCCceeeE
Confidence 343556888888886443 4445443 4789999999743321 00 111111 1124689999999999
Q ss_pred EEe
Q 009902 520 LEA 522 (523)
Q Consensus 520 l~~ 522 (523)
|+.
T Consensus 626 l~~ 628 (628)
T COG0296 626 LKL 628 (628)
T ss_pred eeC
Confidence 973
No 31
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=397.96 Aligned_cols=438 Identities=20% Similarity=0.281 Sum_probs=289.0
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
+.++||++++++|+ ||++||++|||||++||||+|||+||+++ + ..++||++.||++|+|+
T Consensus 23 I~~~sF~~s~~d~~-----G~~~GI~~kldyi~~lG~taiWisP~~~s----------~----~~~~GY~~~d~~~l~p~ 83 (545)
T KOG0471|consen 23 IYPDSFADSDGDGV-----GDLKGITSKLDYIKELGFTAIWLSPFTKS----------S----KPDFGYDASDLEQLRPR 83 (545)
T ss_pred EeccccccccCCCc-----cccccchhhhhHHHhcCCceEEeCCCcCC----------C----HHHhccCccchhhhccc
Confidence 35899999999999 99999999999999999999999999998 2 25889999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCC--CcCeeeCCCCCc--------cc
Q 009902 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN--KVYYMVDGTGQL--------LN 150 (523)
Q Consensus 81 ~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~ 150 (523)
|||+ +||++||+++|++||++|+|+|+||++. +|+||......+. .+||.|.+.... .+
T Consensus 84 fGt~--------edf~~Li~~~h~~gi~ii~D~viNh~~~---~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~n 152 (545)
T KOG0471|consen 84 FGTE--------EDFKELILAMHKLGIKIIADLVINHRSD---EVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLN 152 (545)
T ss_pred ccHH--------HHHHHHHHHHhhcceEEEEeeccccCCc---cccccccCccccccceeeeeccCcccccccCCCCccc
Confidence 9998 9999999999999999999999999999 9999976554433 467777543211 11
Q ss_pred -----------------------cCCcCCcCCCCCHHHHHHHHHHHH-HHHHhccccEEEEccccccccCCCCCCCCChH
Q 009902 151 -----------------------YAGCGNTLNCNHPVVMELILDSLR-HWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 206 (523)
Q Consensus 151 -----------------------~~~~~~dln~~~p~v~~~i~~~~~-~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~ 206 (523)
+...+||||++||+|++.|.++++ +|+ ++||||||+|+++++...+
T Consensus 153 w~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~--------- 222 (545)
T KOG0471|consen 153 WLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGEN--------- 222 (545)
T ss_pred hHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccc---------
Confidence 111279999999999999999999 888 8999999999999997654
Q ss_pred HHHHHHhcccccCCeEecccCCCCcCcccCCCCCcccchhhhhHHHHHHHHHHcCCC-----CcHHHHHHHhhCCccccc
Q 009902 207 LIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDP-----GMKGILATRISGSSDLYR 281 (523)
Q Consensus 207 ~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~ 281 (523)
.+.... ....+-+||.|.....+.... ........-...+....+..+.... ...........
T Consensus 223 -~~~~~~---~~p~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 290 (545)
T KOG0471|consen 223 -FKNMWP---DEPVFDVGEKLQDDNYVAYQY-NDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAY------- 290 (545)
T ss_pred -cccccc---CCCcccceeEecCcchhhccc-ccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhh-------
Confidence 111111 122445666555443222111 0000001111112222121111110 00000000000
Q ss_pred cCCCCCCccEEEEeccCCCchhh------hhhhc-------ccccccCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHH
Q 009902 282 VNKRKPYHSINFIIAHDGFTLYD------LVSYN-------YKHNEANGEGGNDGCNDNFSWNCGFEGETD-DASIKALR 347 (523)
Q Consensus 282 ~~~~~~~~~~~f~~nHD~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~ 347 (523)
.......+|.+||+..+..+ .+... ....+.+ ........-.|.++..+.++ .|...+++
T Consensus 291 ---~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~W~~~~~~~~r~~sr~~ 364 (545)
T KOG0471|consen 291 ---SSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVD---WLSNHDTENRWAHWVLGNHDQARLASRFG 364 (545)
T ss_pred ---ccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHHH---HHhcCCccCCceeeeecCccchhhHHHhc
Confidence 00123455666666433110 00000 0000000 01111111345556666554 56677888
Q ss_pred HHHHHHHHHHHHHcCCeeeeecccccccccCCCCCCCCCC----CCCCccccCccc------------------------
Q 009902 348 SRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHD----TAINNFQWGQLE------------------------ 399 (523)
Q Consensus 348 ~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~----~~r~~~~W~~~~------------------------ 399 (523)
....++..++++++||+|++|||+|+||....-......+ ..|++|+|+...
T Consensus 365 ~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~ 444 (545)
T KOG0471|consen 365 SDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVK 444 (545)
T ss_pred chhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccccCCCCccCcceeccccchhheee
Confidence 8788999999999999999999999999876111111212 128899998762
Q ss_pred ---cccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcC
Q 009902 400 ---TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLP 476 (523)
Q Consensus 400 ---~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~ 476 (523)
..+.+++..++++..+|+....+..|..... ..++.+++|.|...+...+++++|+++.+....+.
T Consensus 445 ~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~-----------~~~~~if~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 513 (545)
T KOG0471|consen 445 MQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLF-----------AATPGLFSFSRNWDGNERFIAVLNFGDSPLSLNLT 513 (545)
T ss_pred ccccCCccHHHHHHHHHHHhhhcccccccceeee-----------cCCCceEEEEeccCCCceEEEEEecCCcccccccc
Confidence 3457899999999999999766666655432 46889999999988788999999999988777765
Q ss_pred CCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEE
Q 009902 477 PPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 521 (523)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~ 521 (523)
.... +.. +.++. .......+.|+|++++||+
T Consensus 514 ~~~~---~~~-~~~~~----------~~~~~~~~~l~p~e~~vl~ 544 (545)
T KOG0471|consen 514 DLDS---VSL-LSSNY----------SDVDLSRLKLEPHEGLVLR 544 (545)
T ss_pred cccc---eee-eeccc----------cccccceeeecCCceEEEe
Confidence 4331 111 11111 1123468999999999997
No 32
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-47 Score=402.21 Aligned_cols=392 Identities=23% Similarity=0.323 Sum_probs=257.6
Q ss_pred cccCCCCCCC------CCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCC
Q 009902 2 NVRAFTGDES------SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF 75 (523)
Q Consensus 2 ~~~~f~~~~~------~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~ 75 (523)
.+++|.++++ +|. |||+||+++||||++|||++|||+||+++ + ..+|||++.||+
T Consensus 7 ~~~~f~d~~~~~~~~~~G~-----Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s----------~----~~~~gY~~~Dy~ 67 (505)
T COG0366 7 YPDRFADSNGSNGPDYDGG-----GDLKGITEKLDYLKELGVDAIWLSPIFES----------P----QADHGYDVSDYT 67 (505)
T ss_pred echhhcCCCCCCccCCCCc-----ccHHhHHHhhhHHHHhCCCEEEeCCCCCC----------C----ccCCCccccchh
Confidence 5789999998 775 99999999999999999999999999997 2 378899999999
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCC----CcCeeeCCC------
Q 009902 76 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN----KVYYMVDGT------ 145 (523)
Q Consensus 76 ~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------ 145 (523)
.|||+|||+ +||++||++||++||+||+|+|+||++. +|+|+........ .+||.|.+.
T Consensus 68 ~id~~~Gt~--------~d~~~li~~~H~~gi~vi~D~V~NH~s~---~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~ 136 (505)
T COG0366 68 KVDPHFGTE--------EDFKELVEEAHKRGIKVILDLVFNHTSD---EHPWFKEARSSKPNPKRSDYYIWRDPDPDGTP 136 (505)
T ss_pred hcCcccCCH--------HHHHHHHHHHHHCCCEEEEEeccCcCCC---ccHHHHHHhcCCCCcccCCCceEccCcccCCC
Confidence 999999998 9999999999999999999999999999 9999987664432 288887321
Q ss_pred --CC--------c----------cccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCC----CC
Q 009902 146 --GQ--------L----------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDG----SP 201 (523)
Q Consensus 146 --~~--------~----------~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~----~~ 201 (523)
.+ + ..+...+||||+.||+|++++.+++++|+ ++||||||+|+++++.+...- ..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~~~~~~ 215 (505)
T COG0366 137 PNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLPPSEEN 215 (505)
T ss_pred CCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCCCcccc
Confidence 00 0 11233489999999999999999999999 599999999999999875420 01
Q ss_pred CCChHHHHHHHhcccccCCeEecccCCCCcCcccC-CCCCcccchhhhhHHHHHHH-HHHcCCC----------CcHHHH
Q 009902 202 LNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLR-KFIKGDP----------GMKGIL 269 (523)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~ 269 (523)
....+.+.+.... ..+.++..++.+......... .+. ......+..... ..+.... .....+
T Consensus 216 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (505)
T COG0366 216 LTFLEEIHEYLRE-ENPDVLIYGEAITDVGEAPGAVKED-----FADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEEL 289 (505)
T ss_pred cccHHHHHHHHHH-HHHHHHhcCcceeeeeccccccchh-----hhhccchhhhhHhhccccccccccccccCcccHHHH
Confidence 1122223222221 122222223332222111110 000 000000111111 1111100 111111
Q ss_pred HHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 009902 270 ATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSR 349 (523)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 349 (523)
...+........ ........|..|||..|+...... .... ...
T Consensus 290 ~~~~~~~~~~~~---~~~~~~~~~~~~hD~~r~~~~~~~-----------------------------~~~~-----~~~ 332 (505)
T COG0366 290 KEILADWPLAVN---LNDGWNNLFLSNHDQPRLLSRFGD-----------------------------DVGG-----RDA 332 (505)
T ss_pred HHHHHHHHhhhc---cccCchhhhhhhcCccceeeeccC-----------------------------Cccc-----hHH
Confidence 111111100000 011223337889998776433210 0000 245
Q ss_pred HHHHHHHHHHHcCCeeeeecccccccccCCCCC-------------CCCCCCCCCccccCc-------------------
Q 009902 350 QMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNN-------------SYGHDTAINNFQWGQ------------------- 397 (523)
Q Consensus 350 ~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~-------------~~~~~~~r~~~~W~~------------------- 397 (523)
.++++.++++++||+|+||||+|+|+.+..... ...++.+|.+|.|+.
T Consensus 333 ~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~ 412 (505)
T COG0366 333 SAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPN 412 (505)
T ss_pred HHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChh
Confidence 788888899999999999999999998755431 234558899999991
Q ss_pred --------cc---cccchHHHHHHHHHHHHhcCcC-cCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEe
Q 009902 398 --------LE---TKKNSHYRFFSEVIKFRQSRRV-FGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFN 465 (523)
Q Consensus 398 --------~~---~~~~~~~~~~~~L~~lRk~~pa-L~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N 465 (523)
.. ....+++.++++|+++|+.+++ +..|...... ......+++|.|... ++.++|++|
T Consensus 413 ~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~n 482 (505)
T COG0366 413 DLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLL---------ADDDPSLLAFLRESG-GETLLVVNN 482 (505)
T ss_pred hhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceec---------CCCCceEEEEecccC-CceEEEEEc
Confidence 10 1135899999999999999844 4445332221 245568999999876 778999999
Q ss_pred CCCCcEEEEcCC
Q 009902 466 AHDFFVKVSLPP 477 (523)
Q Consensus 466 ~s~~~~~~~l~~ 477 (523)
++.....+.+|.
T Consensus 483 ~~~~~~~~~~p~ 494 (505)
T COG0366 483 LSEEEQEVELPG 494 (505)
T ss_pred CCCccccccCCc
Confidence 998876666664
No 33
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1.6e-44 Score=364.95 Aligned_cols=446 Identities=15% Similarity=0.117 Sum_probs=279.7
Q ss_pred cchHHHHcCCCEEEECCCcccchhh-hhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 28 KIPHLLELGINAVELLPVFEFDEME-FQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 28 ~Ldyl~~lGv~~I~L~Pi~~~~~~~-~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
..|||++|||++|||+|+++++..+ ....| ..+.||+++|| .|||+|||+ +||++|+++||++|
T Consensus 79 ~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP------~~D~gyDi~d~-~Idp~~GT~--------eDf~~L~~~Ah~~G 143 (688)
T TIGR02455 79 LWKALSEIGVQGIHNGPIKLSGGIRGREFTP------SIDGNFDRISF-DIDPLLGSE--------EELIQLSRMAAAHN 143 (688)
T ss_pred HHHHHHHhCCCEEEeCcceecccccccCCCC------CCCCCCCcccC-ccCcccCCH--------HHHHHHHHHHHHCC
Confidence 3699999999999999999983211 11111 24679999995 999999998 99999999999999
Q ss_pred CEEEEeeccccccCCCCCCCcccccCCC--CCCcCe-----------eeC--CCC----------------------C--
Q 009902 107 IEVILDVVYNHTNEADDANPYTTSFRGI--DNKVYY-----------MVD--GTG----------------------Q-- 147 (523)
Q Consensus 107 i~VilD~V~nH~~~~~~~~~~~~~~~~~--~~~~~~-----------~~~--~~~----------------------~-- 147 (523)
|+||+|+|+||||. .|+ |+..+.. ..++|| .|. +++ .
T Consensus 144 ~~vi~DlVpnHTs~---ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~ 219 (688)
T TIGR02455 144 AITIDDIIPAHTGK---GAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQ 219 (688)
T ss_pred CEEEEEeCCCCCCC---Ccc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccc
Confidence 99999999999999 888 5433322 237788 442 111 0
Q ss_pred ----------c----------------------cccCCcCCcCCCCCHH--HHHHHH-HHHHHHHHhccccEEEEccccc
Q 009902 148 ----------L----------------------LNYAGCGNTLNCNHPV--VMELIL-DSLRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 148 ----------~----------------------~~~~~~~~dln~~~p~--v~~~i~-~~~~~w~~~~gvDGfR~D~~~~ 192 (523)
. ..|...||+|||.||. |++.|+ +++.+|+ +.|++|||+||+.+
T Consensus 220 rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpf 298 (688)
T TIGR02455 220 RVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGF 298 (688)
T ss_pred cceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-Hhccccceeccccc
Confidence 0 0122338999999999 999999 8999999 89999999999999
Q ss_pred cccCCCCC----CCCChHHHHHHHhc----ccccCCeEecccCCCC---cCcccCCCCCcccchhhhhHHHHHHHHH-Hc
Q 009902 193 LCRGTDGS----PLNAPPLIRAIAKD----AILSRCKIIAEPWDCR---GLYLVGKFPNWDRWAEWNGKYRDDLRKF-IK 260 (523)
Q Consensus 193 ~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~i~E~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 260 (523)
+..+. +. |.+..++++.+++- ..+++-++++|.-... ..|..++. +..+++..+..+... ..
T Consensus 299 Lg~e~-~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~g~~~-----dl~~dF~t~p~~~~AL~t 372 (688)
T TIGR02455 299 LGVER-RAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMSHGGA-----DLSYDFITRPAYHHALLT 372 (688)
T ss_pred eeeec-CCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHhCCCc-----ceeecccccHHHHHHHHc
Confidence 97654 33 34455666665541 4568889999964333 22333221 133444333333222 23
Q ss_pred CCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhh----------hccc---------------cccc
Q 009902 261 GDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVS----------YNYK---------------HNEA 315 (523)
Q Consensus 261 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~----------~~~~---------------~~~~ 315 (523)
++. .-+...+...... ...+.+.++|+.|||+.++..+-- +... ....
T Consensus 373 gda---~pLr~~L~~~~~~----gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~ 445 (688)
T TIGR02455 373 GDT---EFLRLMLKEMHAF----GIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERL 445 (688)
T ss_pred CCH---HHHHHHHHhhhcC----CCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHh
Confidence 332 2222223322111 113467899999999977753200 0000 0000
Q ss_pred CCCC---CCCCCCCCCCCCC-----CCCCCCChHHHHHHHHHHHHHHHHHHHH----cCCeeeeecc-------------
Q 009902 316 NGEG---GNDGCNDNFSWNC-----GFEGETDDASIKALRSRQMKNFHLALMV----SQGTPMMLMG------------- 370 (523)
Q Consensus 316 ~~~~---~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~pG~P~iy~G------------- 370 (523)
.++. +...+...+.+++ -..|-.+-..+.....++.+++++++++ +||+|+||||
T Consensus 446 a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v 525 (688)
T TIGR02455 446 SGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAV 525 (688)
T ss_pred cCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccch
Confidence 0000 0000000011110 0112111111112235678889999999 9999999999
Q ss_pred -cccccccCC--CCCCCCCCC---C---------CCccccCccc---cccchHHHHHHHHHHHHhcCcCcCccCcCCcCc
Q 009902 371 -DEYGHTRYG--NNNSYGHDT---A---------INNFQWGQLE---TKKNSHYRFFSEVIKFRQSRRVFGREDFLNIND 432 (523)
Q Consensus 371 -~E~g~~~~~--~~~~~~~~~---~---------r~~~~W~~~~---~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~ 432 (523)
+|+||.... ++..|+.-+ . +.+--....+ ..+.|+++.+++|+++||++|++..+.+..+
T Consensus 526 ~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~-- 603 (688)
T TIGR02455 526 AELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIP-- 603 (688)
T ss_pred hhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeec--
Confidence 999996421 111111110 0 0011111111 3467999999999999999999999987665
Q ss_pred eeeeccccCCCCCcEEEEEEecCC-CCeEEEEEeCCCCcEEEEc--CCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCe
Q 009902 433 VTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDFFVKVSL--PPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGST 509 (523)
Q Consensus 433 ~~~~~~~~~~~~~~v~af~R~~~~-~~~~lvv~N~s~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (523)
...++.|+++.|..++ +..+++|.|||.++++++| +... ++...++++....... ...+.-.
T Consensus 604 --------~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~-~~~~~dl~~~~~~~~~------~~~~~~~ 668 (688)
T TIGR02455 604 --------DVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFA-PGPVVDIIHESVEGDL------TDDCELM 668 (688)
T ss_pred --------CCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccC-CCCceeccCCCccCCc------CCCceeE
Confidence 2678999999998663 4889999999987766655 4333 4566677766432211 0124468
Q ss_pred EEEcCCEEEEEEeC
Q 009902 510 YNLSPYSSILLEAK 523 (523)
Q Consensus 510 i~l~p~~~~vl~~~ 523 (523)
|+|+||+..+|+.+
T Consensus 669 i~L~~y~~~wl~~~ 682 (688)
T TIGR02455 669 INLDPYEALALRIV 682 (688)
T ss_pred EEecCcceEEEEec
Confidence 99999999999753
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=4.4e-43 Score=365.91 Aligned_cols=317 Identities=21% Similarity=0.293 Sum_probs=208.7
Q ss_pred ccCCC-CCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCC
Q 009902 3 VRAFT-GDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRY 81 (523)
Q Consensus 3 ~~~f~-~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~ 81 (523)
+++|. ++..+| .-+++|+++||||++||||+|||+|++++ ..+|||++.|||+++++|
T Consensus 506 lQgF~Wds~~dg------~w~~~I~ekldyL~~LG~taIWLpP~~~s---------------~s~~GY~p~D~y~lds~y 564 (894)
T PLN02784 506 CQGFNWESHKSG------RWYMELGEKAAELSSLGFTVVWLPPPTES---------------VSPEGYMPKDLYNLNSRY 564 (894)
T ss_pred EEeEEcCcCCCC------chHHHHHHHHHHHHHhCCCEEEeCCCCCC---------------CCCCCcCcccccccCcCc
Confidence 35565 444443 45899999999999999999999999987 256799999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCC--CCCcccccCCCCCCcCeeeCC------C------C-
Q 009902 82 AAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADD--ANPYTTSFRGIDNKVYYMVDG------T------G- 146 (523)
Q Consensus 82 Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~------~- 146 (523)
||+ +||++||++||++||+||+|+|+||++.... +..|. .|. .++.|++ + +
T Consensus 565 GT~--------~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~-~f~-----g~~dW~d~~i~~ddp~F~GrG~ 630 (894)
T PLN02784 565 GTI--------DELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWN-IFG-----GRLNWDDRAVVADDPHFQGRGN 630 (894)
T ss_pred CCH--------HHHHHHHHHHHHCCCEEEEEECcccccccccCCCCccc-ccC-----CeecCCCCcccCCCcccCCcCC
Confidence 998 9999999999999999999999999986311 11111 111 1122211 0 0
Q ss_pred -CccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecc
Q 009902 147 -QLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAE 225 (523)
Q Consensus 147 -~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E 225 (523)
........+||||+.||+||++|.+++.+|++++||||||+|+|++++ ..+++++.+. ..| .++|||
T Consensus 631 ~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~----------~~Fvkeyv~a-~kp-~F~VGE 698 (894)
T PLN02784 631 KSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFW----------GGYVKDYMEA-SEP-YFAVGE 698 (894)
T ss_pred cCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCC----------HHHHHHHHhc-cCC-cEEEEE
Confidence 001112347999999999999999999999988999999999999874 4457776653 233 799999
Q ss_pred cCCCCcCcccCCCCCcccchhhhh-HHHHHHHHHHcCCCCcHHHHHHH--------hhC-----Ccccc----ccCCCCC
Q 009902 226 PWDCRGLYLVGKFPNWDRWAEWNG-KYRDDLRKFIKGDPGMKGILATR--------ISG-----SSDLY----RVNKRKP 287 (523)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------l~~-----~~~~~----~~~~~~~ 287 (523)
.|.... +..+. ..++. .-+..+.+|+....+....|++. +.. ..+.. ..-...|
T Consensus 699 yWd~~~-~~~g~-------~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P 770 (894)
T PLN02784 699 YWDSLS-YTYGE-------MDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWP 770 (894)
T ss_pred eccccc-cccCc-------cccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeecccc
Confidence 998632 11011 11111 11445556654333222222221 110 00000 0112356
Q ss_pred CccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeee
Q 009902 288 YHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMM 367 (523)
Q Consensus 288 ~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P~i 367 (523)
..+|+||+|||+.+... .|.. ...+..+|+|++||.||+|||
T Consensus 771 ~~AVTFVDNHDTg~~Q~------------------------~w~~--------------p~~k~~~AYAyILthpG~PcV 812 (894)
T PLN02784 771 SRAVTFIENHDTGSTQG------------------------HWRF--------------PEGKEMQGYAYILTHPGTPAV 812 (894)
T ss_pred CceEEEecCCCCCCCcc------------------------cCCC--------------CccchhhHHHHHHcCCCcceE
Confidence 88999999999865311 0100 012456689999999999999
Q ss_pred ecccccccccCCCCCCCCCCCCCCccccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcE
Q 009902 368 LMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKF 447 (523)
Q Consensus 368 y~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v 447 (523)
|||+=++. +.+.+++|+.+||+. .++..+-..+. ..+.++
T Consensus 813 Fy~h~y~~-----------------------------~~~~I~~Li~iRk~~-gI~~~S~v~i~----------~a~~~~ 852 (894)
T PLN02784 813 FYDHIFSH-----------------------------YHPEIASLISLRNRQ-KIHCRSEVKIT----------KAERDV 852 (894)
T ss_pred Eehhhhhh-----------------------------hHHHHHHHHHHHHHc-CCCCCCceeEE----------EecCCc
Confidence 99886431 122399999999984 45555444331 356667
Q ss_pred EEEEE
Q 009902 448 LAFTL 452 (523)
Q Consensus 448 ~af~R 452 (523)
|+-.-
T Consensus 853 Y~a~i 857 (894)
T PLN02784 853 YAAII 857 (894)
T ss_pred EEEEe
Confidence 77666
No 35
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.6e-40 Score=341.65 Aligned_cols=395 Identities=17% Similarity=0.215 Sum_probs=253.3
Q ss_pred CCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCc
Q 009902 69 YSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL 148 (523)
Q Consensus 69 Y~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (523)
-.+++||+++++|||. +|||+||++||++||+||||+|+||++.+.. ..+..|++. +..||+.++.+ .
T Consensus 425 ~~vt~fFApssRYGTP--------eDLK~LVD~aH~~GI~VILDvV~NH~~~d~~--~GL~~fDGt-~~~Yf~~~~~g-~ 492 (872)
T PLN03244 425 EKVTNFFAASSRYGTP--------DDFKRLVDEAHGLGLLVFLDIVHSYAAADEM--VGLSLFDGS-NDCYFHTGKRG-H 492 (872)
T ss_pred hccCcccccCcccCCH--------HHHHHHHHHHHHCCCEEEEEecCccCCCccc--cchhhcCCC-ccceeccCCCC-c
Confidence 4689999999999998 9999999999999999999999999998321 123344443 23566655443 3
Q ss_pred cccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEcccccc-ccCCC-------C-------CCCCChHHHHHHHh
Q 009902 149 LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD-------G-------SPLNAPPLIRAIAK 213 (523)
Q Consensus 149 ~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~-~~~~~-------~-------~~~~~~~~~~~~~~ 213 (523)
...+++ ..+|+.+|+|+++|++++++|+++|+|||||+|++..| ..+.. + ...++..+++.++.
T Consensus 493 ~~~WGs-~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~ 571 (872)
T PLN03244 493 HKHWGT-RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANE 571 (872)
T ss_pred cCCCCC-ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHH
Confidence 344555 57899999999999999999999999999999977444 33321 0 12234455665554
Q ss_pred --cccccCCeEecccCCCCcCcc-cCCCCCcccchhhhhHHHHHHHHHHcCCCCc---HHHHHHHhhCCccccccCCCCC
Q 009902 214 --DAILSRCKIIAEPWDCRGLYL-VGKFPNWDRWAEWNGKYRDDLRKFIKGDPGM---KGILATRISGSSDLYRVNKRKP 287 (523)
Q Consensus 214 --~~~~~~~~~i~E~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~ 287 (523)
....|++++|||....-+... .-...+.++...|+..+.+....++...... ...+...+. .+.+..
T Consensus 572 ~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~-------~nrr~~ 644 (872)
T PLN03244 572 ILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLI-------ANKEYA 644 (872)
T ss_pred HHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhhh-------cccCCc
Confidence 346799999999654332221 1111223455899999888888888654432 222222221 111223
Q ss_pred CccEEEEeccCCCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCee-e
Q 009902 288 YHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTP-M 366 (523)
Q Consensus 288 ~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~P-~ 366 (523)
..++.|.+|||..-..+...... ..+. ...++. + ......+ +....||+.++++++||.| +
T Consensus 645 ek~~aYsESHDqaLvGdKTlaf~----l~d~--------~~y~~~---~--~~~vv~R-g~aLhKMiRllt~~~~G~kkL 706 (872)
T PLN03244 645 DKMLSYAENHNQSISGGRSFAEI----LFGA--------IDEDPL---G--GKELLDR-GCSLHKMIRLITFTIGGHAYL 706 (872)
T ss_pred ceEEEEecccceeccccchHHhh----hccc--------cccccc---c--cchhhhh-hhHHHHHHHHHHHHccCccce
Confidence 46789999999832211110000 0000 000000 0 0011111 2235666777889999988 7
Q ss_pred eecccccccccC------CCCCCCCCCCCCCccccCcccc-ccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccc
Q 009902 367 MLMGDEYGHTRY------GNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDN 439 (523)
Q Consensus 367 iy~G~E~g~~~~------~~~~~~~~~~~r~~~~W~~~~~-~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~ 439 (523)
+|||.|+|.... +|..++ ...+.+|+..+. ....+.+|+|.|++|++++|+|..+-. |+..
T Consensus 707 nFMGNEFGhpe~~dfPr~gN~~s~----~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~-------wI~~- 774 (872)
T PLN03244 707 NFMGNEFGHPERIEFPMPSNNFSF----SLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLP-------NIHH- 774 (872)
T ss_pred eecccccCCchheeccccCCCccc----cccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCc-------EEee-
Confidence 999999998653 222111 123568987653 246799999999999999999975532 2211
Q ss_pred cCCCCCcEEEEEEecCCCCeEEEEEeCCCC----cEEEEcCCCCCCCCeEEEEeCCCCCCCC--CCC-CC---------C
Q 009902 440 WDNYDSKFLAFTLHDNNGADIYLAFNAHDF----FVKVSLPPPPPKRQWFRVVDTNLESPDD--IVP-EG---------A 503 (523)
Q Consensus 440 ~~~~~~~v~af~R~~~~~~~~lvv~N~s~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~---------~ 503 (523)
.+.+++|+||.|. .++||+||++. .+.+.+|. .|+|+++++++...-.. ... .. .
T Consensus 775 -~d~e~kVIAF~R~-----~LLfVfNF~P~~sy~dYrIGVp~---~G~Y~eILNSD~~~FGG~g~~~~~~~~t~~~~~~~ 845 (872)
T PLN03244 775 -VKDAAMVISFMRG-----PFLFIFNFHPSNSYEGYDVGVEE---AGEYQIILNSDETKYGGQGIIEEDHYLQRSINKRI 845 (872)
T ss_pred -ecCCCCEEEEEec-----CEEEEEeCCCCCCccCCEECCCC---CCeEEEEEeCChhhhCCCCccCCCceeeccccccc
Confidence 2678899999992 59999999974 23444443 68999999997663111 000 00 0
Q ss_pred --CCCCCeEEEcCCEEEEEEe
Q 009902 504 --AGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 504 --~~~~~~i~l~p~~~~vl~~ 522 (523)
...+.+|.|||.+++||+.
T Consensus 846 ~gr~~sl~l~LPprsavVlk~ 866 (872)
T PLN03244 846 DGLRNCLEVFLPSRTAQVYKL 866 (872)
T ss_pred CCCCceEEEEeCCCEEEEEEE
Confidence 1122468999999999985
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=2.3e-38 Score=334.43 Aligned_cols=179 Identities=19% Similarity=0.261 Sum_probs=136.2
Q ss_pred CCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 17 EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 17 ~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
+.+|||.+++++||||++|||++|||+||+++. ++ .+|||+++||+.|||+|||+ ++|+
T Consensus 10 ~~~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~-------~g------s~hGYdv~D~~~idp~lGt~--------edf~ 68 (825)
T TIGR02401 10 RAGFTFDDAAALLPYLKSLGVSHLYLSPILTAV-------PG------STHGYDVVDHSEINPELGGE--------EGLR 68 (825)
T ss_pred CCCCCHHHHHHhhHHHHHcCCCEEEeCcCccCC-------CC------CCCCCCCCCCCCcCCCCCCH--------HHHH
Confidence 346999999999999999999999999999871 11 56899999999999999998 9999
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCcccccC--CC--CCCcCeee--CCCC------------------------
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFR--GI--DNKVYYMV--DGTG------------------------ 146 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~--~~--~~~~~~~~--~~~~------------------------ 146 (523)
+||++||++||+||+|+|+||++..+..|+|+.... +. ...+||.. ++..
T Consensus 69 ~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~ 148 (825)
T TIGR02401 69 RLSEAARARGLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIK 148 (825)
T ss_pred HHHHHHHHCCCEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCcee
Confidence 999999999999999999999998544578876431 11 11344422 1100
Q ss_pred -----------------------C---------------------------------------ccccCC--cCCcCCCCC
Q 009902 147 -----------------------Q---------------------------------------LLNYAG--CGNTLNCNH 162 (523)
Q Consensus 147 -----------------------~---------------------------------------~~~~~~--~~~dln~~~ 162 (523)
. |-.|.. ..+.|+.++
T Consensus 149 l~~d~~~~~~l~y~~~~~Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~ 228 (825)
T TIGR02401 149 LRFDGDGTLALRYYDHRLPLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVED 228 (825)
T ss_pred eeecCCCceeEEecCccCCcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCC
Confidence 0 000000 157789999
Q ss_pred HHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhcccccCCeEecc
Q 009902 163 PVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAE 225 (523)
Q Consensus 163 p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E 225 (523)
|+|.++....+..|+++.-|||+|||.+.++... ..+++.+.+. ..++.+++.|
T Consensus 229 ~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL~dP--------~~Yl~rLr~~-~~~~~yivvE 282 (825)
T TIGR02401 229 PAVFDATHRLVLELVAEGLVDGLRIDHIDGLADP--------EGYLRRLREL-VGPARYLVVE 282 (825)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEeccccccCCh--------HHHHHHHHHh-cCCCceEEEE
Confidence 9999999999999996544999999999999432 2356666542 3445778777
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=100.00 E-value=1.8e-32 Score=291.04 Aligned_cols=93 Identities=20% Similarity=0.351 Sum_probs=83.5
Q ss_pred CCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 17 EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 17 ~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
+.+++|++++++|+||++|||++|||+||+++. ++ .+|||++.||+.|||+||++ ++|+
T Consensus 14 ~~~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~-------~g------s~hGYdv~D~~~idp~lGt~--------e~f~ 72 (879)
T PRK14511 14 HAGFTFDDAAELVPYFADLGVSHLYLSPILAAR-------PG------STHGYDVVDHTRINPELGGE--------EGLR 72 (879)
T ss_pred CCCCCHHHHHHHhHHHHHcCCCEEEECcCccCC-------CC------CCCCCCcCCCCCcCCCCCCH--------HHHH
Confidence 345999999999999999999999999999871 12 57899999999999999998 9999
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCcccc
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 130 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~ 130 (523)
+||++||++||+||+|+|+||++..+.+++|+..
T Consensus 73 ~Lv~aah~~Gi~VIlDiV~NH~~~~~~~n~ww~d 106 (879)
T PRK14511 73 RLAAALRAHGMGLILDIVPNHMAVGGPDNPWWWD 106 (879)
T ss_pred HHHHHHHHCCCEEEEEeccccccCcCccCHHHHH
Confidence 9999999999999999999999986556777754
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=5.5e-26 Score=210.29 Aligned_cols=386 Identities=19% Similarity=0.248 Sum_probs=235.6
Q ss_pred HHhHHhcc-hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 009902 22 YLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 100 (523)
Q Consensus 22 ~~gl~~~L-dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~ 100 (523)
+.+|...- ..|+--|+..|+++|+.|+..... + ....+-.|+|++| +++.|-|.+ +||+.||+
T Consensus 39 W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~-----~--~rPWWeRYQPvSY-KL~tRSGNE--------~eF~dMV~ 102 (504)
T KOG2212|consen 39 WVDIALECERFLAPKGFGGVQVSPPNENVAIHN-----P--FRPWWERYQPVSY-KLCTRSGNE--------DEFRDMVT 102 (504)
T ss_pred hHHHHHHHHhhcCcCCcceeeecCcchhhhhcC-----C--CCCceeecccceE-EeeccCCCH--------HHHHHHHH
Confidence 44555554 467779999999999999732111 0 1124457999998 899999998 99999999
Q ss_pred HHHHCCCEEEEeeccccccCCC-----------CCCCcccccCCCCCCcCeeeC--C------CCCccccCC------c-
Q 009902 101 ALHGAGIEVILDVVYNHTNEAD-----------DANPYTTSFRGIDNKVYYMVD--G------TGQLLNYAG------C- 154 (523)
Q Consensus 101 ~aH~~Gi~VilD~V~nH~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~------~- 154 (523)
+|.+-|+|+++|+|+|||+... ...|-..+|++. .|-.+| + .....++.+ |
T Consensus 103 RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGV---PYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~ 179 (504)
T KOG2212|consen 103 RCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGV---PYSGWDFNDGKCKTGSGDIENYNDATQVRDCR 179 (504)
T ss_pred HhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCC---CcccccCCCcccCCCccccccccchhhhhcce
Confidence 9999999999999999998521 122333344433 222222 1 112222222 1
Q ss_pred ---CCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCCCCCCCChHHHHHHHhc--ccccCCeEecccCCC
Q 009902 155 ---GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEPWDC 229 (523)
Q Consensus 155 ---~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~E~~~~ 229 (523)
..|||..+.-||..|++.|.+++ ++||.|||+||++||+... .......++.+..| ......+++-|+.+.
T Consensus 180 LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~D---i~~I~~~l~nLnsD~f~s~srpfi~qEVID~ 255 (504)
T KOG2212|consen 180 LVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGD---IKAILDKLHNLNSDWFPSGSKPFIYQEVIDL 255 (504)
T ss_pred EeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHH---HHHHHHHHhhcccccccCCCCceehhhhhhc
Confidence 56999999999999999999999 8999999999999996432 00011112223323 123456788888776
Q ss_pred Cc-CcccCCCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccCCCCCCccEEEEeccCCCchhhhhhh
Q 009902 230 RG-LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSY 308 (523)
Q Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~ 308 (523)
+. ....+++.....+.+ +.|-+.+-..+.+.... .. |.....- ..+....++++|++|||+.|-...
T Consensus 256 GgE~v~~~dY~g~G~~Te--F~f~~~ig~~~r~~~~~-ky----L~nwG~~--wGf~~s~~~L~FvDNHDNQR~~ga--- 323 (504)
T KOG2212|consen 256 GGEPIKSSDYFGNGRVTE--FKFGAKLGTVIRKWNKM-KY----LKNWGEG--WGFMPSDRALVFVDNHDNQRGHGA--- 323 (504)
T ss_pred CCceeecccccCCceeee--eechHHHHHHHhcchhH-HH----HHhcCCc--cCcCCCcceEEEeccCcccccCCC---
Confidence 63 333344433332233 34445555555544221 11 1110001 112233588999999999764211
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CeeeeecccccccccCCCCCCCCCC
Q 009902 309 NYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQ-GTPMMLMGDEYGHTRYGNNNSYGHD 387 (523)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~p-G~P~iy~G~E~g~~~~~~~~~~~~~ 387 (523)
.|.. -+..-..++++||.++||..| |+|-+..---+-......++. +..
T Consensus 324 --------------------------gga~---VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~-~~~ 373 (504)
T KOG2212|consen 324 --------------------------GGAS---VLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPN-NNG 373 (504)
T ss_pred --------------------------Ccce---EEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCC-CCc
Confidence 0000 000012568999999999999 999988765555444333211 100
Q ss_pred CCCCc---------cccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCC
Q 009902 388 TAINN---------FQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGA 458 (523)
Q Consensus 388 ~~r~~---------~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~ 458 (523)
....| --|-. +.-..-++.|.++|... +..... . |-++..+-++|.| +.
T Consensus 374 ~i~SP~Fn~D~tC~~GWvC-----EHRWrqI~~Mv~FrnAV---~~t~~~-----~-----w~d~g~nqIaF~R----g~ 431 (504)
T KOG2212|consen 374 VIKSPTFNPDTTCGNGWVC-----EHRWRQIRNMVNFRNAV---DGTPFT-----N-----WYDNGSNQIAFGR----GN 431 (504)
T ss_pred ceecceeCCCCcccCceee-----echHHHHHHHHhhhhhc---CCcccc-----c-----eeeCCCcEEEEec----CC
Confidence 00111 12222 12345578889998863 222211 1 2256789999999 66
Q ss_pred eEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCC
Q 009902 459 DIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLES 494 (523)
Q Consensus 459 ~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~ 494 (523)
+-++++|...-.-+..|...+++|+|+++++.....
T Consensus 432 kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~~~ 467 (504)
T KOG2212|consen 432 RGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDKIN 467 (504)
T ss_pred ccEEEEeCcchhHHHHHhcCCCCCceeeeecccccC
Confidence 678889988776666776677789999999886553
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.94 E-value=5.6e-27 Score=207.23 Aligned_cols=96 Identities=35% Similarity=0.573 Sum_probs=88.6
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
+.|++|.++++++. |||+||+++|+||++||||+|||+||+++.. . ...+|||++.||++++|+
T Consensus 2 i~~~~F~~~~~~~~-----G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~--------~---~~~~~gY~~~d~~~i~~~ 65 (166)
T smart00642 2 IYPDRFADGNGDGG-----GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQ--------G---YPSYHGYDISDYKQIDPR 65 (166)
T ss_pred eeeccccCCCCCCC-----cCHHHHHHHHHHHHHCCCCEEEECcceeCCC--------C---CCCCCCcCccccCCCCcc
Confidence 46899999999997 9999999999999999999999999999821 1 136889999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 81 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 81 ~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
|||. +||++||++||++||+||+|+|+||++.
T Consensus 66 ~Gt~--------~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 66 FGTM--------EDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred cCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 9998 9999999999999999999999999995
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.85 E-value=1.4e-20 Score=212.46 Aligned_cols=94 Identities=22% Similarity=0.333 Sum_probs=84.5
Q ss_pred CCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 17 EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 17 ~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
+.+++|++++++||||++|||++|||+||+++. ++ .+|||+++||+.|||+||++ ++|+
T Consensus 752 ~~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~-------~g------s~hGYdv~D~~~idp~lG~~--------edf~ 810 (1693)
T PRK14507 752 HKDFTFADAEAILPYLAALGISHVYASPILKAR-------PG------STHGYDIVDHSQINPEIGGE--------EGFE 810 (1693)
T ss_pred CCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCC-------CC------CCCCCCCCCCCccCcccCCH--------HHHH
Confidence 356999999999999999999999999999961 22 57899999999999999998 9999
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCccccc
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF 131 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~ 131 (523)
+||++||++||+||||+|+||++.++.+|+|+...
T Consensus 811 ~Lv~~ah~~Gi~vilDiV~NH~~~~~~~n~w~~dv 845 (1693)
T PRK14507 811 RFCAALKAHGLGQLLDIVPNHMGVGGADNPWWLDV 845 (1693)
T ss_pred HHHHHHHHCCCEEEEEecccccCCCccCCHHHHHH
Confidence 99999999999999999999999755578888643
No 41
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.77 E-value=4.1e-17 Score=179.05 Aligned_cols=91 Identities=20% Similarity=0.337 Sum_probs=80.7
Q ss_pred CCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCC----CCCCCCCch
Q 009902 16 PEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYA----AGGGGPLKA 91 (523)
Q Consensus 16 ~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~G----t~~~~~~~~ 91 (523)
.+.-|.|.+..++|+||++||+|.|||+||++.+ + .++.|++.||++|||.|| ++
T Consensus 125 sK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G---------~-----SnS~Ysi~Dyl~idP~~~~~~~~~------- 183 (1464)
T TIGR01531 125 AKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELG---------G-----SNSCYSLYDQLQLNQHFKSQKDGK------- 183 (1464)
T ss_pred hhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCC---------C-----CCCCccccchhhcChhhcccCCcH-------
Confidence 3567999999999999999999999999999862 1 355999999999999996 55
Q ss_pred HHHHHHHHHHHHHC-CCEEEEeeccccccCCCCCCCccccc
Q 009902 92 SWEFKEMVKALHGA-GIEVILDVVYNHTNEADDANPYTTSF 131 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~-Gi~VilD~V~nH~~~~~~~~~~~~~~ 131 (523)
+||++||++||++ ||++|+|+|+|||+. +|+|+.++
T Consensus 184 -~d~~~lV~~~h~~~Gm~~ilDvV~NHTa~---ds~Wl~eH 220 (1464)
T TIGR01531 184 -NDVQALVEKLHRDWNVLSITDIVFNHTAN---NSPWLLEH 220 (1464)
T ss_pred -HHHHHHHHHHHHhcCCEEEEEeeeccccc---CCHHHHhC
Confidence 9999999999997 999999999999999 78887533
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=3.3e-18 Score=174.05 Aligned_cols=89 Identities=25% Similarity=0.376 Sum_probs=82.1
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
=+|....+.||||++|||+++|++|||.. .|| ..|||+|+|+..|+|.+|+. +.|..||
T Consensus 16 FtF~~A~~~l~yl~~LGIShLY~SPIftA-------~pG------StHGYDVvD~t~InPeLGG~--------egl~rLv 74 (889)
T COG3280 16 FTFADARALLDYLADLGISHLYLSPIFTA-------RPG------STHGYDVVDPTEINPELGGE--------EGLERLV 74 (889)
T ss_pred CCHHHHHHhhHHHHhcCchheeccchhhc-------CCC------CCCCccCCCccccChhhcCh--------HHHHHHH
Confidence 48999999999999999999999999998 344 57899999999999999998 9999999
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCccc
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTT 129 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~ 129 (523)
.++|++||.+|+|+|+|||+..+.++||+.
T Consensus 75 aalk~~GlGlI~DIVPNHMav~g~~N~ww~ 104 (889)
T COG3280 75 AALKSRGLGLIVDIVPNHMAVGGHENPWWW 104 (889)
T ss_pred HHHHhcCCceEEEecccchhcccccChHHH
Confidence 999999999999999999999866778774
No 43
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.65 E-value=3.9e-14 Score=142.29 Aligned_cols=143 Identities=27% Similarity=0.473 Sum_probs=99.2
Q ss_pred ccHHhHHhcchHHHH---------------cCCCEEEECCCcccchhh---------h----------------------
Q 009902 20 GSYLGLIQKIPHLLE---------------LGINAVELLPVFEFDEME---------F---------------------- 53 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~---------------lGv~~I~L~Pi~~~~~~~---------~---------------------- 53 (523)
|+|.||++.-..|++ .|+++|+|+||=+..+-. .
T Consensus 193 GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~ 272 (811)
T PF14872_consen 193 GTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHEDGD 272 (811)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeecccccccccccccccccCce
Confidence 999999986555522 799999999997653100 0
Q ss_pred ----hhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCC----CchHHHHHHHHHHHHH---CCCEEEEeeccccccCCC
Q 009902 54 ----QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGP----LKASWEFKEMVKALHG---AGIEVILDVVYNHTNEAD 122 (523)
Q Consensus 54 ----~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~----~~~~~dl~~Lv~~aH~---~Gi~VilD~V~nH~~~~~ 122 (523)
..+|. ..+|||++. -+|+...+| ..|-+||-+||..+|. ..|+||+|+|+.|.....
T Consensus 273 v~v~L~kPd-----tqNWGYDv~-------I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~ 340 (811)
T PF14872_consen 273 VTVTLRKPD-----TQNWGYDVV-------ILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQA 340 (811)
T ss_pred EEEEecCCC-----ccccCccee-------eeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchh
Confidence 01233 469999984 233322222 2455999999999997 579999999999998732
Q ss_pred CCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccc
Q 009902 123 DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~ 192 (523)
. -+ -++.|+. .| .-.+-|||+.+|.||.-+.+.-+.=+ ++|+||+|+|.+.-
T Consensus 341 ~---~L------Ln~~flk-GP-------nMYGQdlnhq~P~VRAILLEmQRRK~-n~GaDGIRVDGgQD 392 (811)
T PF14872_consen 341 L---DL------LNRRFLK-GP-------NMYGQDLNHQNPVVRAILLEMQRRKI-NTGADGIRVDGGQD 392 (811)
T ss_pred h---Hh------hhhhhcc-CC-------ccccccccccChHHHHHHHHHHHhhc-ccCCceeEeccccc
Confidence 1 11 0111211 00 11256899999999999999999988 79999999997644
No 44
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=99.13 E-value=1.4e-10 Score=91.98 Aligned_cols=89 Identities=24% Similarity=0.363 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCcCcCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEE
Q 009902 408 FFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRV 487 (523)
Q Consensus 408 ~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~ 487 (523)
|||+||+|||++|+|+.|+...+. +. ...++.++++.|..+ ++.++|++|+|++++++. + ...++.+
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~-~~------~~~~~~l~~~~r~~~-~~~l~v~~Nls~~~~~~~-~----~~~~~~l 67 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLE-VE------RDAPDALLAFRRTGG-GERLLVAFNLSDEPVTVP-E----GPWGEVL 67 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEE-EE------EEEETTEEEEEEEET-TEEEEEEEE-SSS-EEEE-T----SCCEEEE
T ss_pred CHHHHHHHHhhCccccCCCcccEE-EE------ecCCCEEEEEEEEcC-CceEEEEEecCCCcEEcc-C----CCCCeEE
Confidence 699999999999999999776541 10 024667888888655 789999999999999998 1 2344555
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEE
Q 009902 488 VDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 520 (523)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl 520 (523)
..+.... .+..++|+|++++||
T Consensus 68 ~~s~~~~-----------~~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 68 FSSEPAR-----------AGGAGTLPPWSVVVL 89 (89)
T ss_dssp EECSCSS-----------E--EEEE-TTEEEEE
T ss_pred EcCCCcc-----------cccCceECCCEEEEC
Confidence 5553332 113999999999997
No 45
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=99.05 E-value=4e-10 Score=111.91 Aligned_cols=97 Identities=23% Similarity=0.298 Sum_probs=83.3
Q ss_pred CCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 17 EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 17 ~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
..-|.|....++|..++++|+|.|+++|+.+-+. ..-.|++.|...+||.+... ......++++
T Consensus 16 k~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~--------------S~S~YSI~Dql~~~~~~~~~--~~~~~~~~v~ 79 (423)
T PF14701_consen 16 KWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGE--------------SNSPYSIYDQLKFDPDFFPP--GKESTFEDVK 79 (423)
T ss_pred hhcCCHhHHHHHHHHHHHcCCcEEEecccccCCC--------------CCCCccccchhhcChhhcCC--CccccHHHHH
Confidence 4569999999999999999999999999998622 22379999999999999876 3335568999
Q ss_pred HHHHHHH-HCCCEEEEeeccccccCCCCCCCcccccC
Q 009902 97 EMVKALH-GAGIEVILDVVYNHTNEADDANPYTTSFR 132 (523)
Q Consensus 97 ~Lv~~aH-~~Gi~VilD~V~nH~~~~~~~~~~~~~~~ 132 (523)
++|.+++ +.||.+|.|||+|||+. +++|..+++
T Consensus 80 ~~v~~~~~~~~ll~~~DvV~NHtA~---nS~Wl~eHP 113 (423)
T PF14701_consen 80 EFVKEAEKKYGLLSMTDVVLNHTAN---NSPWLREHP 113 (423)
T ss_pred HHHHHHHHHcCceEEEEEeeccCcC---CChHHHhCc
Confidence 9999995 78999999999999999 999997653
No 46
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=2.2e-07 Score=97.50 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHH
Q 009902 18 IRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKE 97 (523)
Q Consensus 18 ~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~ 97 (523)
.-|.|.....+|.-+|+-|.|-|+++||.+-+. ....|...|-.++++.+..... ---.+|.++
T Consensus 137 ~LGpl~eWeprL~va~e~gYNmIHfTPlqelG~--------------S~S~YSl~dql~~~~~~~~~~~--k~s~eDV~~ 200 (1521)
T KOG3625|consen 137 LLGPLDEWEPRLRVAKESGYNMIHFTPLQELGL--------------SRSCYSLADQLELNPDFSRPNR--KYSFEDVGQ 200 (1521)
T ss_pred hcCChhhhhHHHHHHHHcCCceEeeeeHHHhcc--------------CCCccchHhhhhcChhhhccCC--CCCHHHHHH
Confidence 347888888899999999999999999998621 2237999888888888762211 000299999
Q ss_pred HHHHHHHC-CCEEEEeeccccccCCCCCCCcccccC
Q 009902 98 MVKALHGA-GIEVILDVVYNHTNEADDANPYTTSFR 132 (523)
Q Consensus 98 Lv~~aH~~-Gi~VilD~V~nH~~~~~~~~~~~~~~~ 132 (523)
||+.+|+- +|--|-|+|+|||+. +++|..+++
T Consensus 201 lV~~l~rewnvlsi~DvV~NHtAn---ns~WlleHP 233 (1521)
T KOG3625|consen 201 LVEKLKREWNVLSITDVVYNHTAN---NSKWLLEHP 233 (1521)
T ss_pred HHHHHHhhcCeeeeehhhhhcccc---CCchhHhCc
Confidence 99999976 999999999999999 777875443
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.65 E-value=3.3e-07 Score=77.41 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=85.5
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
+-+++||++|+++|-+.---. +-+-|-|+..-..+|.++ . +=|+++|++||++|
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h-----------------~g~ayYPt~~~~~hp~L~-~--------Dllge~v~a~h~~G 57 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH-----------------GGYAYYPTKVGPRHPGLK-R--------DLLGEQVEACHERG 57 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc-----------------cEEEEccCCCCcCCCCCC-c--------CHHHHHHHHHHHCC
Confidence 346899999999999864111 112355666566778887 4 88999999999999
Q ss_pred CEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCc-CCcCCCCCHHHHHHHHHHHHHHHHhccc
Q 009902 107 IEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGC-GNTLNCNHPVVMELILDSLRHWVVEYHV 182 (523)
Q Consensus 107 i~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~dln~~~p~v~~~i~~~~~~w~~~~gv 182 (523)
|+|+.=+-++ ... ... ..+|+|+..+++|... .+... ...+..+.| .+++++..++-.++.|.+
T Consensus 58 irv~ay~~~~-~d~-----~~~-----~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~-Y~e~~~~~i~Ei~~~y~~ 125 (132)
T PF14871_consen 58 IRVPAYFDFS-WDE-----DAA-----ERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSP-YREFLLEQIREILDRYDV 125 (132)
T ss_pred CEEEEEEeee-cCh-----HHH-----HhCCceeeECCCCCCcCCCCcCCCCceecCCCcc-HHHHHHHHHHHHHHcCCC
Confidence 9999877665 211 111 2347888887776521 11110 122334444 559999999999988999
Q ss_pred cEEEEcc
Q 009902 183 DGFRFDL 189 (523)
Q Consensus 183 DGfR~D~ 189 (523)
|||=+|.
T Consensus 126 DGiF~D~ 132 (132)
T PF14871_consen 126 DGIFFDI 132 (132)
T ss_pred CEEEecC
Confidence 9998873
No 48
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=98.61 E-value=5.3e-08 Score=84.33 Aligned_cols=115 Identities=18% Similarity=0.304 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHHHhcCcCcCccCcCCc-CceeeeccccCCCCCcEEEEEEecCC---------CCeEEEEEeCCCCcEE
Q 009902 403 NSHYRFFSEVIKFRQSRRVFGREDFLNI-NDVTWHEDNWDNYDSKFLAFTLHDNN---------GADIYLAFNAHDFFVK 472 (523)
Q Consensus 403 ~~~~~~~~~L~~lRk~~paL~~g~~~~~-~~~~~~~~~~~~~~~~v~af~R~~~~---------~~~~lvv~N~s~~~~~ 472 (523)
....++|+.|++||+++|.|+.++-..+ .++.|++.+- +..++|+++.-.++. -+.++||+|.++++++
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~-~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t 119 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGP-DQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQT 119 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-ST-T--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EE
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCC-CCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEE
Confidence 4579999999999999999999986654 4588887753 467999999998732 2569999999999999
Q ss_pred EEcCCCCCCCCeEEEEeCCCCCCCCCCCC-CCCCCCCeEEEcCCEEEEEEe
Q 009902 473 VSLPPPPPKRQWFRVVDTNLESPDDIVPE-GAAGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 473 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~p~~~~vl~~ 522 (523)
+.++... + .++......+....... ......++++|||++++||+.
T Consensus 120 ~~~~~~~--g--~~Lhpvq~~~~D~~v~~a~~~~~~G~~tVPa~T~aVFv~ 166 (168)
T PF11852_consen 120 FTVPGLA--G--FQLHPVQAESSDPVVKQASFDAANGTFTVPARTVAVFVQ 166 (168)
T ss_dssp EETGGGS--S---EE-HHHHTGSGTTGGGTEEETTTTEEEE-TTEEEEEEE
T ss_pred EEcCCcC--c--eEechHHhcccchhhhceeEecCCCeEEECCceEEEEEe
Confidence 9998643 3 44444322222111111 112235799999999999985
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.58 E-value=5.1e-07 Score=88.55 Aligned_cols=148 Identities=20% Similarity=0.180 Sum_probs=84.6
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
.+-+.+.+.|+.|+++|||+|++-=-. .+. ..|.+ .+.+...+......+..+ -+=|+.+|
T Consensus 16 ~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gd-----------a~Y~S-~~~p~s~~~~g~~~~~pg------~DpL~~~I 76 (311)
T PF02638_consen 16 PSKEQIDEMLDDLKSAGFNAVFVQVRP-RGD-----------ALYPS-DIEPWSGYLTGKQGKDPG------FDPLEFMI 76 (311)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEe-CcE-----------EEecc-cccccccccCCCCCCCCC------ccHHHHHH
Confidence 356778888999999999999864221 100 00000 111111101111111101 15699999
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcccc---CCcCCcCCCCCHHHHHHHHHHHHHH
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY---AGCGNTLNCNHPVVMELILDSLRHW 176 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~dln~~~p~v~~~i~~~~~~w 176 (523)
++||++||+|..=+.++..+.. ..+... .++.++.....+..... .+...=||-.+|+||++|++.++-.
T Consensus 77 ~eaHkrGlevHAW~~~~~~~~~--~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Ei 149 (311)
T PF02638_consen 77 EEAHKRGLEVHAWFRVGFNAPD--VSHILK-----KHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEI 149 (311)
T ss_pred HHHHHcCCEEEEEEEeecCCCc--hhhhhh-----cCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHH
Confidence 9999999999988854433221 111111 11222222111111111 1112348999999999999999999
Q ss_pred HHhccccEEEEcccccc
Q 009902 177 VVEYHVDGFRFDLASVL 193 (523)
Q Consensus 177 ~~~~gvDGfR~D~~~~~ 193 (523)
++.|.|||+-+|-.-..
T Consensus 150 v~~YdvDGIhlDdy~yp 166 (311)
T PF02638_consen 150 VKNYDVDGIHLDDYFYP 166 (311)
T ss_pred HhcCCCCeEEecccccc
Confidence 99999999999944443
No 50
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=98.54 E-value=5.2e-08 Score=78.15 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=54.5
Q ss_pred CCCCcEEEEEEecCCCCeEEEEEeCCCC--cEEEEcCCCCCCCCeEEEEeCCCCCCCC--CC-CCCC---CCCCCeEEEc
Q 009902 442 NYDSKFLAFTLHDNNGADIYLAFNAHDF--FVKVSLPPPPPKRQWFRVVDTNLESPDD--IV-PEGA---AGTGSTYNLS 513 (523)
Q Consensus 442 ~~~~~v~af~R~~~~~~~~lvv~N~s~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~---~~~~~~i~l~ 513 (523)
+.+++|+||.|...+++.++||+||++. ...+.++... +++|+++++++...... .. ...+ ..+..+|+||
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~-~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp 84 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPE-AGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTLP 84 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSS-SEEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEES
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCC-cceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEEC
Confidence 5789999999976423389999999987 3444444332 78999999986653111 00 0000 1233589999
Q ss_pred CCEEEEEEeC
Q 009902 514 PYSSILLEAK 523 (523)
Q Consensus 514 p~~~~vl~~~ 523 (523)
|++++||+.|
T Consensus 85 ~~s~~vl~~~ 94 (95)
T PF02806_consen 85 PYSALVLKLK 94 (95)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEc
Confidence 9999999865
No 51
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.46 E-value=4.5e-06 Score=85.98 Aligned_cols=285 Identities=18% Similarity=0.162 Sum_probs=146.1
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHH---------hccccEEEEccccccccCCCCCCCCChHHHHHHHh----cccccCCeE
Q 009902 156 NTLNCNHPVVMELILDSLRHWVV---------EYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK----DAILSRCKI 222 (523)
Q Consensus 156 ~dln~~~p~v~~~i~~~~~~w~~---------~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 222 (523)
.|++-.||.|+.+-++|+.+.++ +..+||||+||+.++.-+. .......+++... ++..-..+.
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADl---Lqia~dyfkaaYgv~~~~a~An~HlS 220 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADL---LQIAGDYFKAAYGVDKNDANANKHLS 220 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THH---HHHHHHHHHHHH-TTTBHHHHCTC--
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHH---HHHHHHHHHHHhCCCcChhhHhhhhe
Confidence 57888999999999999999997 7889999999999995431 0000111222211 111235578
Q ss_pred ecccCCCC-cCccc--CCCCCcccchhhhhHHHHHHHHHHcCCCCcHHHHHHHhhCCccccccC--CCCCCccEEEEecc
Q 009902 223 IAEPWDCR-GLYLV--GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVN--KRKPYHSINFIIAH 297 (523)
Q Consensus 223 i~E~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~f~~nH 297 (523)
|-|.|..+ ..|.. +... -.|+..++.++...+.........+...+....--.... .......-.|+.+|
T Consensus 221 ilE~ws~nd~~y~~~~g~~q-----L~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~en~a~pNYsFvrAH 295 (809)
T PF02324_consen 221 ILEAWSSNDPDYVKDTGNPQ-----LTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTENEAQPNYSFVRAH 295 (809)
T ss_dssp EESSSTTTHHHHHHHTTSSS-----BEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--SSESS-EEEES-BS
T ss_pred eeeccccCChHHHhcCCCce-----eeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcCCcccCceeeeecc
Confidence 88999877 33322 1111 456778888888877766555555555554433211111 11223446799999
Q ss_pred CCCch---hhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHH---HH-----------HHHHHHHHHHHHH
Q 009902 298 DGFTL---YDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKA---LR-----------SRQMKNFHLALMV 360 (523)
Q Consensus 298 D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-----------~~~~~~~~~~~~~ 360 (523)
|..-- ..++.. +++... ++ .-...+..... +. .--+.+++++||+
T Consensus 296 DsevQ~vI~~II~~--~i~~~~-----dg-----------~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLt 357 (809)
T PF02324_consen 296 DSEVQTVIAQIIKD--KINPNS-----DG-----------LTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLT 357 (809)
T ss_dssp STTTHHHHHHHHHH--HT-TTT-----CT-----------TC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh--hcCCcc-----cC-----------ccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHh
Confidence 97521 222221 111110 00 00011111111 11 1135678888888
Q ss_pred c-CCeeeeecccccccccCCCCCCCCCCCCCCccccCccccccchHHHHHHHHHHHHhcCcCcCccCcCCcCceeeeccc
Q 009902 361 S-QGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDN 439 (523)
Q Consensus 361 ~-pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~g~~~~~~~~~~~~~~ 439 (523)
- .-||-+||||-+-..+.= |. .....++.+-.|++-|.++-+ |... + .+.+.
T Consensus 358 NKDTVPRVYYGDLYtDdGQY-------------Ma------~KSpYyDaI~tLLKaRikYva---GGQt-M-~~~~~--- 410 (809)
T PF02324_consen 358 NKDTVPRVYYGDLYTDDGQY-------------MA------TKSPYYDAITTLLKARIKYVA---GGQT-M-AVTYL--- 410 (809)
T ss_dssp -SSSEEEEEHHHHBESSSST-------------TT------SB-TTHHHHHHHHHHHHHH-----S-EE-E-EE--E---
T ss_pred CCCCCceEEecccccccchh-------------hh------hcCchHHHHHHHHHHHHHhhc---CCce-e-eeecc---
Confidence 5 599999999987654421 11 124678999999999999643 3321 1 11111
Q ss_pred cCCCCCcEEEEEEecCC-------------CCeEEEE-EeCC------CCcEEEEcCCCCCCCCeEEEEeCCCCC
Q 009902 440 WDNYDSKFLAFTLHDNN-------------GADIYLA-FNAH------DFFVKVSLPPPPPKRQWFRVVDTNLES 494 (523)
Q Consensus 440 ~~~~~~~v~af~R~~~~-------------~~~~lvv-~N~s------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 494 (523)
...+.+|++=.|..++ .+.+.|| .|.. .+.+++..-....+..|+.++.+....
T Consensus 411 -~~~~~~vLtSVRyGkgam~a~d~G~~~tRt~Gi~vii~Nnp~l~l~~~d~v~lnMGaAHkNQ~YR~llltT~~G 484 (809)
T PF02324_consen 411 -NGDNSGVLTSVRYGKGAMTATDTGTAETRTSGIGVIISNNPNLKLNSNDTVVLNMGAAHKNQAYRPLLLTTKDG 484 (809)
T ss_dssp -EETTTSEEEEEE-BTTBSSTT----CCCCT--EEEEEES-TT-B--TT-EEEEE--GGGTT-EEEEEEEEESSS
T ss_pred -cCCCCceEEEEecCCCcCcccccCCccceeceeEEEEcCCcccccCCCCeEEEecchhhccccchhhhhccccC
Confidence 0245689999997764 1334444 4443 245566666655678899888765443
No 52
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=2.2e-05 Score=78.29 Aligned_cols=147 Identities=18% Similarity=0.069 Sum_probs=85.9
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCC--CCCchHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGG--GPLKASWEFKE 97 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~--~~~~~~~dl~~ 97 (523)
.+=..+.+.||.|+.||||+|+.. ... .||...- .++-|..+..+. ....--+=|+.
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~q--V~~------------------~G~~lyp-S~~~p~s~~~~~~~~~~~g~DpLa~ 119 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQ--VWN------------------DGDALYP-SAVLPWSDGLPGVLGVDPGYDPLAF 119 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEE--Eec------------------Ccccccc-ccccccccCcCcccCCCCCCChHHH
Confidence 455677888999999999999943 222 1332211 111111111000 00000155999
Q ss_pred HHHHHHHCCCEEEEeeccccccCCCCCCCcccccC---CCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHH
Q 009902 98 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFR---GIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLR 174 (523)
Q Consensus 98 Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~ 174 (523)
+|++||+|||+|+-=+-+--++.. .+++..... ....+.+-.....++.. ..=||-.+|+|+++|.+.+.
T Consensus 120 ~I~~AHkr~l~v~aWf~~~~~a~~--~s~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~ldPg~Pevq~~i~~lv~ 192 (418)
T COG1649 120 VIAEAHKRGLEVHAWFNPYRMAPP--TSPLTKRHPHWLTTKRPGWVYVRHQGWGK-----RVWLDPGIPEVQDFITSLVV 192 (418)
T ss_pred HHHHHHhcCCeeeechhhcccCCC--CChhHhhCCCCcccCCCCeEEEecCCcee-----eeEeCCCChHHHHHHHHHHH
Confidence 999999999999887766555552 111111110 00011111111121111 23378899999999999999
Q ss_pred HHHHhccccEEEEccccccc
Q 009902 175 HWVVEYHVDGFRFDLASVLC 194 (523)
Q Consensus 175 ~w~~~~gvDGfR~D~~~~~~ 194 (523)
--++.|.|||+-||-.-+.+
T Consensus 193 evV~~YdvDGIQfDd~fy~~ 212 (418)
T COG1649 193 EVVRNYDVDGIQFDDYFYYP 212 (418)
T ss_pred HHHhCCCCCceecceeeccc
Confidence 99999999999999655543
No 53
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.08 E-value=0.0014 Score=68.31 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=34.1
Q ss_pred CcccCCCCCCCCCCCCCCCccHH-hHHhcchHHHHcCCCEEEECCCccc
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYL-GLIQKIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~-gl~~~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
+|+-|- ...-|+ |||. ++.+-+|.+++.|++.|+|+|+...
T Consensus 11 ~~l~SL--~~~~Gi-----GDfg~dl~~~id~~~~~G~~~~qilPl~~~ 52 (497)
T PRK14508 11 LHITSL--PGSYGI-----GDFGKGAYEFIDFLAEAGQSYWQILPLGPT 52 (497)
T ss_pred eccccC--CCCCCC-----cchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 355555 345677 9995 9999999999999999999999885
No 54
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.99 E-value=5.6e-05 Score=74.65 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=92.5
Q ss_pred ccHHhHHhcchHHHHcC--CCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC-CCCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELG--INAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM-SRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lG--v~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~~~~~dl~ 96 (523)
.+=..+.+.++.+++.| +++|||=.=+.. +|.-.+| ..| .+|-. .+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~-------------------~~~~~~f-~~d~~~FPd-----------~~ 69 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK-------------------EFQWCDF-EFDPDRFPD-----------PE 69 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc-------------------CCcceee-EECcccCCC-----------HH
Confidence 45667888889999999 667777653332 2221122 333 25543 78
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccc---cCCcCCcCCCCCHHHHHHHHHHH
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELILDSL 173 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dln~~~p~v~~~i~~~~ 173 (523)
+||+++|++|++|++-+.+ +++. +++.+.+. ....|+..+.++.... +.+..--+|+.||++++.+.+.+
T Consensus 70 ~~i~~l~~~G~~~~~~~~P-~i~~---~~~~~~e~---~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 142 (308)
T cd06593 70 GMLSRLKEKGFKVCLWINP-YIAQ---KSPLFKEA---AEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKL 142 (308)
T ss_pred HHHHHHHHCCCeEEEEecC-CCCC---CchhHHHH---HHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHH
Confidence 9999999999999999986 5655 44433222 1235555544332211 12223457999999999999999
Q ss_pred HHHHHhccccEEEEccccccccC
Q 009902 174 RHWVVEYHVDGFRFDLASVLCRG 196 (523)
Q Consensus 174 ~~w~~~~gvDGfR~D~~~~~~~~ 196 (523)
+.++ +.|||||-+|....++.+
T Consensus 143 ~~~~-~~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 143 KPLL-DMGVDCFKTDFGERIPTD 164 (308)
T ss_pred HHHH-HhCCcEEecCCCCCCCcc
Confidence 9998 699999999987766544
No 55
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.91 E-value=9.9e-05 Score=72.49 Aligned_cols=133 Identities=20% Similarity=0.364 Sum_probs=88.4
Q ss_pred ccHHhHHhcchHHHHcCC--CEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC-CCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv--~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~~~~~dl~ 96 (523)
-+-+.|.+.++.++++|| ++|+|=-=+.. .+| +| ..|+ +|- +.+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~-----------------~~g----~f-~~d~~~FP-----------dp~ 73 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET-----------------CYG----DF-DFDPTKFP-----------DPK 73 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc-----------------cCC----cc-ccChhhCC-----------CHH
Confidence 456677888889999884 57776542321 011 22 3332 443 379
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc----ccCCcCCcCCCCCHHHHHHHHHH
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL----NYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
+||+++|++|+|+++=+-+ +++. +++.+.+ .....|+..++++... .+.+...-+|+.||++++.+.+.
T Consensus 74 ~mi~~l~~~G~k~~l~i~P-~i~~---~s~~~~e---~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (303)
T cd06592 74 GMIDQLHDLGFRVTLWVHP-FINT---DSENFRE---AVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSR 146 (303)
T ss_pred HHHHHHHHCCCeEEEEECC-eeCC---CCHHHHh---hhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHH
Confidence 9999999999999999988 4554 3443322 2224555555443111 11222345899999999999999
Q ss_pred HHHHHHhccccEEEEccccc
Q 009902 173 LRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~~~~ 192 (523)
++..+.+.|||||-+|....
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 147 LKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHHhCCcEEEeCCCCc
Confidence 99999889999999997553
No 56
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.88 E-value=0.00016 Score=73.00 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=85.3
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~a 102 (523)
..|.+.++.++++|++.+.|===+.. .+... ....|.+..|- .+|- .-|+.|++.+
T Consensus 58 ~~i~~~a~~~~~~G~e~fviDDGW~~------~r~~d----~~~~GdW~~~~----~kFP----------~Gl~~l~~~i 113 (394)
T PF02065_consen 58 EKILELADAAAELGYEYFVIDDGWFG------GRDDD----NAGLGDWEPDP----KKFP----------NGLKPLADYI 113 (394)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-SSSBC------TESTT----TSTTSBECBBT----TTST----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEcCcccc------ccCCC----cccCCceeECh----hhhC----------CcHHHHHHHH
Confidence 45666678889999997765332221 11110 11223333221 3554 4599999999
Q ss_pred HHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccc
Q 009902 103 HGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHV 182 (523)
Q Consensus 103 H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gv 182 (523)
|++||+.-|=+-+--++. +++.+.. +++|....+..... ....+--||+++|+|++++.+.+...++++||
T Consensus 114 ~~~Gmk~GlW~ePe~v~~---~S~l~~~-----hPdw~l~~~~~~~~-~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gi 184 (394)
T PF02065_consen 114 HSLGMKFGLWFEPEMVSP---DSDLYRE-----HPDWVLRDPGRPPT-LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGI 184 (394)
T ss_dssp HHTT-EEEEEEETTEEES---SSCHCCS-----SBGGBTCCTTSE-E-CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHCCCeEEEEeccccccc---hhHHHHh-----CccceeecCCCCCc-CcccceEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998877776 4444422 24554443222111 11123358999999999999999999999999
Q ss_pred cEEEEccccccc
Q 009902 183 DGFRFDLASVLC 194 (523)
Q Consensus 183 DGfR~D~~~~~~ 194 (523)
|.|-+|....+.
T Consensus 185 dYiK~D~n~~~~ 196 (394)
T PF02065_consen 185 DYIKWDFNRDIT 196 (394)
T ss_dssp SEEEEE-TS-TT
T ss_pred CEEEeccccCCC
Confidence 999999876664
No 57
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=97.85 E-value=8e-06 Score=61.64 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=44.2
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCC----CCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEE
Q 009902 443 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP----PPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSI 518 (523)
Q Consensus 443 ~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~ 518 (523)
..++||+|.|.++ +++++||+|.+++++++++.-. .......++++... ..-...|+|+|.++.
T Consensus 7 P~~gvYvYfR~~~-~~tVmVilN~n~~~~~ldl~ry~E~l~~~~~~~diltg~~-----------i~l~~~l~l~~~~~~ 74 (78)
T PF10438_consen 7 PQDGVYVYFRYYD-GKTVMVILNKNDKEQTLDLKRYAEVLGGFTSAKDILTGKT-----------IDLSKNLTLPPKSVL 74 (78)
T ss_dssp -BTTEEEEEEEES-SEEEEEEEE-SSS-EEEEGGGGHHHHTT--EEEETTT--E-----------EE-SSEEEE-TTEEE
T ss_pred ccCCEEEEEEEcC-CCEEEEEEcCCCCCeEEcHHHHHHhhCCCcceEECCCCCE-----------EecCCcEEECCCceE
Confidence 5789999999887 9999999999999999998521 11122333333211 113369999999999
Q ss_pred EEE
Q 009902 519 LLE 521 (523)
Q Consensus 519 vl~ 521 (523)
||+
T Consensus 75 ILe 77 (78)
T PF10438_consen 75 ILE 77 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 58
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.71 E-value=3.9e-05 Score=79.29 Aligned_cols=86 Identities=21% Similarity=0.324 Sum_probs=55.0
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCC----CCCCCCCCCCCCCchHHHHH
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFS----PMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~----vd~~~Gt~~~~~~~~~~dl~ 96 (523)
+-.-|.+..+-+|++|||..||.|-+.++.++ +.-...-..||+-+|-|. -..+|||. +||+
T Consensus 585 tN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~------tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~--------~dL~ 650 (809)
T PF02324_consen 585 TNVVIAKNADLFKSWGITSFEMAPQYRSSTDG------TFLDSIIQNGYAFTDRYDLGMSKPTKYGSV--------EDLR 650 (809)
T ss_dssp HHHHHHHTHHHHHHTTEEEEE----S-B--SS------SSHHHHTT-SSSBS-TT-SSSSS-BTTB-H--------HHHH
T ss_pred HHHHHHHhHHHHHhcCcceeeeCcceecCCCC------cchhhHhhcCccccchhhhcCCCCCCCCCH--------HHHH
Confidence 34567788999999999999999988874321 100001134899888765 46789997 9999
Q ss_pred HHHHHHHHCCCEEEEeeccccccC
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
.-|+++|+.||+||.|.|++.+-.
T Consensus 651 ~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 651 NAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp HHHHHHHHTT-EEEEEE-TSEE--
T ss_pred HHHHHHHHcCcchhhhhchHhhhC
Confidence 999999999999999999988764
No 59
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=97.64 E-value=0.00015 Score=51.91 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=31.4
Q ss_pred EEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEE
Q 009902 447 FLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 521 (523)
Q Consensus 447 v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~ 521 (523)
|-+-.|..+ +..+++++|++++++++.|+. .+.++++..... ..++|+||++.||+
T Consensus 2 Vev~~R~~~-~~~y~F~~N~s~~~~~v~l~~-----~~~dll~g~~~~-------------~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 2 VEVTVREND-GGRYLFLLNFSDEPQTVTLPE-----SYTDLLTGETVS-------------GGLTLPPYGVRVLK 57 (58)
T ss_dssp EEEEE-----ETTEEEEEE-SSS-EE----T-----T-EEEES--------------------SEE-TTEEEEEE
T ss_pred eEEEEEEcC-CCEEEEEEECCCCCEEEEcCC-----CceecccCccee-------------eEEEECCCEEEEEE
Confidence 344567554 789999999999999999954 447888774432 34999999999997
No 60
>PLN02635 disproportionating enzyme
Probab=97.62 E-value=0.0015 Score=68.22 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=33.5
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHH-hcchHHHHcCCCEEEECCCccc
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLI-QKIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~-~~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
+|+-|... .-|| |||-... +-+|.+++.|.+.++|+|+.+.
T Consensus 34 l~l~SLps--~~GI-----GDfg~~a~~fvd~la~~G~~~wQilPL~pt 75 (538)
T PLN02635 34 LHPTSLPG--PYGI-----GDLGDEAFRFLDWLASTGCSVWQVLPLVPP 75 (538)
T ss_pred EccccCCC--CCCC-----cchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 46777752 3567 9998866 6789999999999999999876
No 61
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.58 E-value=0.011 Score=68.36 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=37.9
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccc
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFD 49 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~ 49 (523)
+|+-|......-|+ |||.++.+-++.+++.|.+.|.|+|+....
T Consensus 729 ~~l~sLrs~~~~Gi-----GDf~dl~~~vd~~a~~G~~~~qilPl~~~~ 772 (1221)
T PRK14510 729 MHLYSLRSQRPWGI-----GDFEELYALVDFLAEGGQSLWGVNPLHPLG 772 (1221)
T ss_pred EccccCCCCCCCCc-----cCHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 46667766667788 999999999999999999999999998853
No 62
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=97.54 E-value=0.00062 Score=79.32 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=81.2
Q ss_pred HHHHHHcCCeeeeecccccccccCCCCCCCCCCCCCCccccCccc--------------------------cccchHHHH
Q 009902 355 HLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE--------------------------TKKNSHYRF 408 (523)
Q Consensus 355 ~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~--------------------------~~~~~~~~~ 408 (523)
.++-+|+||||=||+|.|+=.- +.-+++.|.|+++.... ....-=+..
T Consensus 1500 ~lLklt~PGVPD~YQG~E~wd~------SLVDPDNRRPVDf~~r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l 1573 (1693)
T PRK14507 1500 TLLKLTLPGVPDTYQGTEFWDF------SLVDPDNRRPVDYAARARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAV 1573 (1693)
T ss_pred HHHHHcCCCCCcccCCcccccc------cCcCCCCCCCCCHHHHHHHHHhhhhcccccccccchhhhhccCCCchHHHHH
Confidence 3445999999999999996543 22445667887765221 001224467
Q ss_pred HHHHHHHHhcCcCcC-ccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeC-----------------CCCc
Q 009902 409 FSEVIKFRQSRRVFG-REDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA-----------------HDFF 470 (523)
Q Consensus 409 ~~~L~~lRk~~paL~-~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~-----------------s~~~ 470 (523)
+++++++|+++|.|. .|++..+. +. -...+.|+||.|... +..++||+=. .-..
T Consensus 1574 ~~~~L~lRr~~p~lF~~G~Y~PL~-~~------G~~~~hv~AFaR~~~-~~~~vvvvpR~~~~l~~~~~~~~~~~~~W~d 1645 (1693)
T PRK14507 1574 LWRLLADRRARPALFRDGDYRPLK-AE------GARAEHVVAFARRRG-GDDLVVAVPRLVARLAGEDGELPWSAEAWAG 1645 (1693)
T ss_pred HHHHHHHHHhChhhhccCCeeEEe-cc------CCccccEEEEEecCC-CcEEEEEEecchhhhhcccccCCcccCCCCC
Confidence 899999999999975 57777652 11 134678999999886 6666666421 1133
Q ss_pred EEEEcCCCCCCCCeEEEEeCCC
Q 009902 471 VKVSLPPPPPKRQWFRVVDTNL 492 (523)
Q Consensus 471 ~~~~l~~~~~~~~~~~~~~~~~ 492 (523)
..+.||.. ..+.|++++....
T Consensus 1646 T~~~LP~~-~~~~w~d~ltg~~ 1666 (1693)
T PRK14507 1646 TVVPLVLP-AGSRWVDVLTGRE 1666 (1693)
T ss_pred CEEeCCCc-cCccceEeccCce
Confidence 46778743 2568999997643
No 63
>smart00632 Aamy_C Aamy_C domain.
Probab=97.51 E-value=0.00033 Score=53.98 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=48.8
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCE-EEEEE
Q 009902 443 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYS-SILLE 521 (523)
Q Consensus 443 ~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~-~~vl~ 521 (523)
+++.+++|.| ++..+|++|.+...++..+....+.|+|++++..... ...... ...+..+++|||.+ ++|+.
T Consensus 6 ~~~~~laF~R----g~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g~~~-g~~v~V--~~~G~~~~~l~~~~~v~i~~ 78 (81)
T smart00632 6 NGDNQIAFER----GSKGFVAINRSDSDLTITLQTSLPAGTYCDVISGLCT-GKSVTV--GSNGIATFTLPAGGAVAIHV 78 (81)
T ss_pred CCCeEEEEEC----CCeEEEEEECCCCceEEEEeecCCCcceEEEecCccc-CCEEEE--CCCCEEEEEECCCCeEEEEE
Confidence 4556999999 6889999999988888877665567889999874111 011110 00234689999999 55543
No 64
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.49 E-value=0.00032 Score=69.98 Aligned_cols=97 Identities=21% Similarity=0.258 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHCCCEEEEeeccccccCCCCCCCccc---ccCCCCCCcCeeeCCCCCcc----ccCCcCCcCCCCCHHHH
Q 009902 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT---SFRGIDNKVYYMVDGTGQLL----NYAGCGNTLNCNHPVVM 166 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~dln~~~p~v~ 166 (523)
+.++||+++|++|+||++=+.+. +... .++..+ .+.......|+..+..+... .+.+..--+|+.||+++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~-i~~~--~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~ 162 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPI-IKLR--PHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAA 162 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCc-cccc--cccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHH
Confidence 48999999999999999976652 2110 111110 01111124566665544321 12233345899999999
Q ss_pred HHHHHHHHHHHHhccccEEEEcccccc
Q 009902 167 ELILDSLRHWVVEYHVDGFRFDLASVL 193 (523)
Q Consensus 167 ~~i~~~~~~w~~~~gvDGfR~D~~~~~ 193 (523)
+...+.++.+++++|||||-+|+...+
T Consensus 163 ~Ww~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 163 QWWMEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHHHHHHHHHhcCCcEEEecCCCcc
Confidence 999999999997899999999977543
No 65
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.42 E-value=0.00099 Score=65.91 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc----ccCCcCCcCCCCCHHHHHHH
Q 009902 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL----NYAGCGNTLNCNHPVVMELI 169 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~dln~~~p~v~~~i 169 (523)
+.++||+++|++|+||++-+.+- ++. +++.+.+. ....|+..+.++... .+.+...-+|+.||+.++..
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~---~~~~y~e~---~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww 146 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQ---DHPRYKEL---KEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWW 146 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccC---CCHHHHHH---HHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHH
Confidence 37899999999999999977654 333 33433222 224566554333211 11222234789999999999
Q ss_pred HHHHHHHHHhccccEEEEccccc
Q 009902 170 LDSLRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 170 ~~~~~~w~~~~gvDGfR~D~~~~ 192 (523)
.+.++.-+.+.|||||=+|....
T Consensus 147 ~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 147 KEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHHHHHHhcCCCcEEEecCCCC
Confidence 99996555589999999996543
No 66
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.089 Score=57.94 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCC---cCCcCCCCCHHHHHHHH
Q 009902 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAG---CGNTLNCNHPVVMELIL 170 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~dln~~~p~v~~~i~ 170 (523)
+.++|++..|++|||+|+=+.|.-.. +++.++... ...|+..++++....... ...-+||.||++|+...
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~i~~----d~~~~~e~~---~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~ 394 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPYIKQ----DSPLFKEAI---EKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWA 394 (772)
T ss_pred CHHHHHHHHHhcCceEEEEecccccc----CCchHHHHH---HCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHH
Confidence 46799999999999999988774333 444443322 246777766654433222 23456999999999999
Q ss_pred H-HHHHHHHhccccEEEEcccccccc
Q 009902 171 D-SLRHWVVEYHVDGFRFDLASVLCR 195 (523)
Q Consensus 171 ~-~~~~w~~~~gvDGfR~D~~~~~~~ 195 (523)
+ ....++ ++|||||=.|......-
T Consensus 395 ~~~~~~l~-d~Gv~g~W~D~nEp~~~ 419 (772)
T COG1501 395 SDKKKNLL-DLGVDGFWNDMNEPEPF 419 (772)
T ss_pred HHHHhHHH-hcCccEEEccCCCCccc
Confidence 5 556677 89999999997766543
No 67
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.10 E-value=0.0013 Score=64.94 Aligned_cols=143 Identities=15% Similarity=0.247 Sum_probs=87.9
Q ss_pred ccHHhHHhcchHHHHcCC--CEEEECCCcccchhhhhhcCCCCCCCCCccCCCc-CcCCCCCC-CCCCCCCCCCchHHHH
Q 009902 20 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST-INFFSPMS-RYAAGGGGPLKASWEF 95 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv--~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~-~d~~~vd~-~~Gt~~~~~~~~~~dl 95 (523)
++-+.|.+-++.+++.|| ++|||- .+... . ...+||.. .+| ..|+ +|- +.
T Consensus 20 ~s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~-------~------~~~~g~~~~~~f-~~d~~~FP-----------dp 73 (317)
T cd06594 20 GGTDKVLEALEKARAAGVKVAGLWLQ-DWTGR-------R------ETSFGDRLWWNW-EWDPERYP-----------GL 73 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEc-cccCc-------c------cccccceeeeee-EEChhhCC-----------CH
Confidence 477888888898888765 668875 33110 0 01113211 111 3333 333 37
Q ss_pred HHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCcCCcCCCCCHHHHHHHHHH
Q 009902 96 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 96 ~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
++||+++|++|++||+-+.+ ++.. +++.. +.......|+..++++... .+.+...-+|+.||++++...+.
T Consensus 74 ~~mi~~Lh~~G~~~~~~i~P-~v~~---~~~~~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 147 (317)
T cd06594 74 DELIEELKARGIRVLTYINP-YLAD---DGPLY--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQV 147 (317)
T ss_pred HHHHHHHHHCCCEEEEEecC-ceec---CCchh--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHH
Confidence 89999999999999997764 4433 22211 1212224566665544321 11222345799999999999999
Q ss_pred HHHHHHhccccEEEEccccccc
Q 009902 173 LRHWVVEYHVDGFRFDLASVLC 194 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~~~~~~ 194 (523)
++..+.++|||||=+|.-..++
T Consensus 148 ~~~~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 148 IKEMLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HHHHhhhcCCcEEEecCCCCCC
Confidence 9888558999999999766543
No 68
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=97.00 E-value=0.0023 Score=63.43 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=61.1
Q ss_pred HHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCc--cccCCcCCcCCCCCHHHHHHHHHH
Q 009902 95 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL--LNYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
.++||+++|++|+|||+-+.+ +++. +++.+.+. ....|+..+..+.. ..+.+...-+|+.||++++...+.
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P-~v~~---~~~~y~e~---~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 140 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWP-TFGP---ETENYKEM---DEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQ 140 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecC-CcCC---CChhHHHH---HHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHH
Confidence 689999999999999996654 3444 33333222 22456665543321 112232346899999999998887
Q ss_pred HHHHHHhccccEEEEccccc
Q 009902 173 LRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~~~~ 192 (523)
+...+.++|||||=+|....
T Consensus 141 ~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 141 LKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHhhcCCCcEEEecCCCC
Confidence 76545489999999997653
No 69
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.90 E-value=0.0091 Score=58.19 Aligned_cols=139 Identities=19% Similarity=0.134 Sum_probs=85.3
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
|+=..+-+.|+.|++-|+|+|-+-= +. + .+.-.|....- .-...|.. ...+.|+++|+
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVIDv--Kd------------d--~G~i~y~s~~~--~~~~~ga~----~~~i~D~~~l~ 67 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVIDV--KD------------D--DGNITYDSQVP--LAREIGAV----KPYIKDLKALV 67 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEE--ec------------C--CceEEecCCCc--hhhhcccc----cccccCHHHHH
Confidence 5545566678999999999998652 11 0 12223333221 11122221 11147899999
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCC-ccccCCcCCcCCCCCHHHHHHHHHHHHHHHH
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQ-LLNYAGCGNTLNCNHPVVMELILDSLRHWVV 178 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~ 178 (523)
+++|++||.+|.=+|.= . .|.+ ...+++|.....+|. +.+..+ ..=+|--+++||+|++++++...
T Consensus 68 ~~l~e~gIY~IARIv~F---k----D~~l----a~~~pe~av~~~~G~~w~d~~~-~~WvnP~~~evw~Y~i~IA~Eaa- 134 (316)
T PF13200_consen 68 KKLKEHGIYPIARIVVF---K----DPVL----AEAHPEWAVKTKDGSVWRDNEG-EAWVNPYSKEVWDYNIDIAKEAA- 134 (316)
T ss_pred HHHHHCCCEEEEEEEEe---c----ChHH----hhhChhhEEECCCCCcccCCCC-CccCCCCCHHHHHHHHHHHHHHH-
Confidence 99999999999999841 0 1111 011245554332222 222222 22267788999999999999999
Q ss_pred hccccEEEEcccccc
Q 009902 179 EYHVDGFRFDLASVL 193 (523)
Q Consensus 179 ~~gvDGfR~D~~~~~ 193 (523)
..|+|.+-||-+-+=
T Consensus 135 ~~GFdEIqfDYIRFP 149 (316)
T PF13200_consen 135 KLGFDEIQFDYIRFP 149 (316)
T ss_pred HcCCCEEEeeeeecC
Confidence 799999999977654
No 70
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.76 E-value=0.015 Score=61.23 Aligned_cols=162 Identities=13% Similarity=0.197 Sum_probs=81.6
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC-----CCCCCCCCCCchHHHH
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-----RYAAGGGGPLKASWEF 95 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~-----~~Gt~~~~~~~~~~dl 95 (523)
+.....+.|+.|+.+-||.|+.== |-|.-......+. .+=.. .......+-+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYD----------------------W~~rH~~Pl~~~~~~~~~~w~D~-~~r~i~~~~V 172 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYD----------------------WMYRHHKPLPGTNGQPDQTWTDW-ANRQISTSTV 172 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS------------------------SBTTB-S-SSS-EEE-TT-TT-T--EEEHHHH
T ss_pred CchhHHHHHHHHHhhCcCeEEEEe----------------------eccccCCcCCCCCCchhhhhhhh-cCCEehHHHH
Confidence 566777789999999999998532 2222111111111 11100 0111113779
Q ss_pred HHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCC----ccccCC-c---CCcCCCCCHHHHH
Q 009902 96 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQ----LLNYAG-C---GNTLNCNHPVVME 167 (523)
Q Consensus 96 ~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~---~~dln~~~p~v~~ 167 (523)
|.+|++||+.||++|.=.-+.-...+-.+ ....++|+....... ...+.. + +--.|..||+=|+
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~~~~--------~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~ 244 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNNYEE--------DGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQN 244 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT--S----------SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccCccc--------ccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHH
Confidence 99999999999999985443322221001 111234555532221 111111 1 2235889999999
Q ss_pred HHHHHHHHHHHhccccEEEEccccccccC--CCCCCC-C----ChHHHHHHHh
Q 009902 168 LILDSLRHWVVEYHVDGFRFDLASVLCRG--TDGSPL-N----APPLIRAIAK 213 (523)
Q Consensus 168 ~i~~~~~~w~~~~gvDGfR~D~~~~~~~~--~~~~~~-~----~~~~~~~~~~ 213 (523)
+|++-+...++.+|+|||-+|..+..... ..|... . ..+||+++++
T Consensus 245 yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~ 297 (559)
T PF13199_consen 245 YIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKE 297 (559)
T ss_dssp HHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999988755332 233333 2 2356666665
No 71
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.74 E-value=0.0045 Score=61.25 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=82.0
Q ss_pred ccHHhHHhcchHHHHcCC--CEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC-CCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv--~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~~~~~dl~ 96 (523)
.+-+.+.+-++.+++.+| ++|||-.=+.. +|... ..|+ +| -+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-------------------~~~~f---~~d~~~F-----------Pdp~ 67 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-------------------SYRLF---TWDPYRF-----------PEPK 67 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhhC-------------------CCCce---eechhcC-----------CCHH
Confidence 456677777888887665 66776531111 22211 2222 33 3378
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCcCCcCCCCCHHHHHHHHHHH
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDSL 173 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~~p~v~~~i~~~~ 173 (523)
+||+.+|++|+||++=+.+. ++.+. ..+- +.......|+....++... .+.+...-+|+.||++++...+.+
T Consensus 68 ~~i~~l~~~g~k~~~~~~P~-i~~~~-~~~~---~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~ 142 (317)
T cd06600 68 KLIDELHKRNVKLVTIVDPG-IRVDQ-NYSP---FLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLF 142 (317)
T ss_pred HHHHHHHHCCCEEEEEeecc-ccCCC-CChH---HHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHH
Confidence 99999999999999977653 33210 1111 1111123455544333211 122222347999999999999999
Q ss_pred HHHHHhccccEEEEcccc
Q 009902 174 RHWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 174 ~~w~~~~gvDGfR~D~~~ 191 (523)
+..+.+.|||||=+|...
T Consensus 143 ~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 143 SEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHhhcCCCceEEeeCCC
Confidence 988878999999999654
No 72
>PRK10658 putative alpha-glucosidase; Provisional
Probab=96.70 E-value=0.013 Score=63.68 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccc---cCCcCCcCCCCCHHHHHHHH
Q 009902 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELIL 170 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dln~~~p~v~~~i~ 170 (523)
+.++||+++|++|+||++-+.+ +++. +++.+.+. ....|+..++++.... +.+...-+|+.||++++...
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~---~s~~f~e~---~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~ 398 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQ---KSPLFKEG---KEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYA 398 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCC---CchHHHHH---HHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHH
Confidence 3688999999999999998766 3443 34433322 2245666655553321 22223457999999999999
Q ss_pred HHHHHHHHhccccEEEEccccccc
Q 009902 171 DSLRHWVVEYHVDGFRFDLASVLC 194 (523)
Q Consensus 171 ~~~~~w~~~~gvDGfR~D~~~~~~ 194 (523)
+.++.++ +.|||||-.|....++
T Consensus 399 ~~~~~l~-d~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 399 DKLKGLL-DMGVDCFKTDFGERIP 421 (665)
T ss_pred HHHHHHH-hcCCcEEEecCCceee
Confidence 9999988 7999999999665544
No 73
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=96.62 E-value=0.016 Score=58.00 Aligned_cols=133 Identities=21% Similarity=0.248 Sum_probs=82.6
Q ss_pred cHHhHHhcchHHHHcCC--CEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC-CCCCCCCCCCchHHHHHH
Q 009902 21 SYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFKE 97 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv--~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~~~~~dl~~ 97 (523)
+-..+.+.++.+++.|| ++|||-+-+.. +|.. +..|+ +|- +.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-------------------~~~~---f~~d~~~fP-----------dp~~ 68 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-------------------GYRV---FTWDKERFP-----------DPKE 68 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-------------------CCCc---eeeccccCC-----------CHHH
Confidence 55677778888888775 66887643332 2221 12333 343 3689
Q ss_pred HHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCcCCcCCCCCHHHHHHHHHHHH
Q 009902 98 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDSLR 174 (523)
Q Consensus 98 Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~~p~v~~~i~~~~~ 174 (523)
|++++|++|++|++=+.+ |+..+. ..+-+ .......|+..+.++... .+.+..--+|+.||+.++...+.++
T Consensus 69 m~~~l~~~g~~~~~~~~P-~v~~~~-~~~~~---~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 143 (339)
T cd06604 69 LIKELHEQGFKVVTIIDP-GVKVDP-GYDVY---EEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYK 143 (339)
T ss_pred HHHHHHHCCCEEEEEEeC-ceeCCC-CChHH---HHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHH
Confidence 999999999999987665 332210 11111 111123455554443211 1122223469999999999999999
Q ss_pred HHHHhccccEEEEccccc
Q 009902 175 HWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 175 ~w~~~~gvDGfR~D~~~~ 192 (523)
..+ +.|||||=+|....
T Consensus 144 ~~~-~~Gvdg~w~D~~Ep 160 (339)
T cd06604 144 KFV-DLGVDGIWNDMNEP 160 (339)
T ss_pred HHh-hCCCceEeecCCCc
Confidence 988 79999999997653
No 74
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.0025 Score=67.07 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=64.9
Q ss_pred HHHHHHHcCCeeeeecccccccccCCCCCCCCCCCCCCccccCccc-------cccc---------hHHHHHHHHHHHHh
Q 009902 354 FHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-------TKKN---------SHYRFFSEVIKFRQ 417 (523)
Q Consensus 354 ~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~-------~~~~---------~~~~~~~~L~~lRk 417 (523)
...+-+|.||||=||+|.|.=.. +.-+++.|.|.+..... ..+. --...+.+++++|+
T Consensus 711 q~LlkltaPGVPD~YQGtE~wd~------SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~ 784 (889)
T COG3280 711 QTLLKLTAPGVPDIYQGTELWDF------SLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRR 784 (889)
T ss_pred HHHHHHcCCCCCccccchhhhhc------cccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHH
Confidence 34455999999999999995432 22334556666544322 0110 12336678999999
Q ss_pred cCcC-cCccCcCCcCceeeeccccCCCCCcEEEEEEecCCCCeEEEEEeC
Q 009902 418 SRRV-FGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 466 (523)
Q Consensus 418 ~~pa-L~~g~~~~~~~~~~~~~~~~~~~~~v~af~R~~~~~~~~lvv~N~ 466 (523)
++|. +..|++..+.- . -...+.++||.|... ++.+++|++.
T Consensus 785 ~~~elF~~GdY~Pl~~-----~--G~~a~hviAFaR~~~-~~~~i~v~Pr 826 (889)
T COG3280 785 EHPELFAGGDYLPLFA-----A--GPAADHVIAFARGKD-DQFAITVAPR 826 (889)
T ss_pred hchHhhcCCCeeeecc-----c--CchhHHHHHHhhccC-CceeEEeehH
Confidence 9998 67788877621 0 124578999999776 7777877764
No 75
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.47 E-value=0.0096 Score=59.45 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=82.3
Q ss_pred cHHhHHhcchHHHHcCC--CEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC-CCCCCCCCCCchHHHHHH
Q 009902 21 SYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFKE 97 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv--~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~~~~~dl~~ 97 (523)
+-+.+.+.++.+++.|| ++|||=.=+.. +|. +| ..|+ +|-. -..++
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-------------------~~~--~f-~~d~~~FPd---------p~~~~ 70 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD-------------------RRR--DF-TLDPVRFPG---------LKMPE 70 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc-------------------Ccc--ce-ecccccCCC---------ccHHH
Confidence 45667777888888665 56776432221 121 11 2232 3333 12399
Q ss_pred HHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCcCCcCCCCCHHHHHHHHHHHH
Q 009902 98 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDSLR 174 (523)
Q Consensus 98 Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~~p~v~~~i~~~~~ 174 (523)
||+++|++|+||++=+.+. +.....+.. ...+.......|+..+.++... .+.+...-+|+.||++++...+.++
T Consensus 71 mi~~L~~~G~k~~~~i~P~-v~~~~~~~~-~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 71 FVDELHANGQHYVPILDPA-ISANEPTGS-YPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHCCCEEEEEEeCc-cccCcCCCC-CHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 9999999999999987653 332100000 1111111123555554444321 1122233468999999999999999
Q ss_pred HHHHhccccEEEEccccc
Q 009902 175 HWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 175 ~w~~~~gvDGfR~D~~~~ 192 (523)
.++.++|||||=+|....
T Consensus 149 ~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 149 DFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred HHHhcCCCcEEEecCCCC
Confidence 988779999999996543
No 76
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.27 E-value=0.048 Score=58.75 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=80.5
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
-.-+.|...||.|+++|+|+|+|-.+.... .++.+.. -|-|.++.-+ -.+.+.|+. +
T Consensus 331 qq~~~L~~lLdrlk~~G~ntV~lqafadp~----------gd~~~~s-~yfP~~~lp~-------r~d~f~~~a-w---- 387 (671)
T PRK14582 331 QQDRNIDVLIQRVKDMQISTVYLQAFADPD----------GDGLVKE-LYFPNRLLPM-------RADLFNRVA-W---- 387 (671)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCC----------CCccccc-cccCcccccc-------ccCCcCHHH-H----
Confidence 345777888999999999999998875541 1111111 3444433222 111112211 1
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHh
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 179 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~ 179 (523)
+.+|++|++|..=+-+=-++... +-+-...+....+ +. .. -..+...|+-.+|+||+.|.+++.-.++.
T Consensus 388 ~l~~r~~v~v~AWmp~~~~~~~~-~~~~~~~~~~~~~-------~~-~~--~~~~~~rl~P~~pe~r~~i~~i~~dla~~ 456 (671)
T PRK14582 388 QLRTRAGVNVYAWMPVLSFDLDP-TLPRVKRLDTGEG-------KA-QI--HPEQYRRLSPFDDRVRAQVGMLYEDLAGH 456 (671)
T ss_pred HHHHhhCCEEEEeccceeeccCC-CcchhhhccccCC-------cc-cc--CCCCCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 22999999999887654333211 1111111110000 00 00 00113458889999999999999999987
Q ss_pred ccccEEEEcccccc
Q 009902 180 YHVDGFRFDLASVL 193 (523)
Q Consensus 180 ~gvDGfR~D~~~~~ 193 (523)
+.|||+-||-=..+
T Consensus 457 ~~~dGilf~Dd~~l 470 (671)
T PRK14582 457 AAFDGILFHDDAVL 470 (671)
T ss_pred CCCceEEecccccc
Confidence 89999999944344
No 77
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.24 E-value=0.015 Score=57.62 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeee-CCCCCcc--c-cCCcCCcCCCCCHHHHHHHH
Q 009902 95 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV-DGTGQLL--N-YAGCGNTLNCNHPVVMELIL 170 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~~~~dln~~~p~v~~~i~ 170 (523)
.++||+++|++|+||++-+.+ ++.. +++.+.+.. ...|+.. ...+... . +.+..--+|+.||++++.+.
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P-~v~~---~~~~y~e~~---~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~ 144 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEP-FVLK---NSKNWGEAV---KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFH 144 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcC-cccC---CchhHHHHH---hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHH
Confidence 688999999999999999865 3333 344332221 1334222 2222111 1 11223346889999999999
Q ss_pred HHHHHHHHhccccEEEEcccc
Q 009902 171 DSLRHWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 171 ~~~~~w~~~~gvDGfR~D~~~ 191 (523)
+.++..+ +.|||||=+|...
T Consensus 145 ~~~~~~~-~~Gvdg~w~D~~E 164 (317)
T cd06598 145 DNYKKLI-DQGVTGWWGDLGE 164 (317)
T ss_pred HHHHHhh-hCCccEEEecCCC
Confidence 9998886 7999999999654
No 78
>PRK10426 alpha-glucosidase; Provisional
Probab=96.07 E-value=0.018 Score=62.30 Aligned_cols=96 Identities=14% Similarity=0.208 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc--ccC-CcCCcCCCCCHHHHHHHH
Q 009902 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL--NYA-GCGNTLNCNHPVVMELIL 170 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~dln~~~p~v~~~i~ 170 (523)
+.++||+++|++|+|||+-+.+. +.. +++.+.+. ....|+..+.++... .++ +..--+|+.||++++...
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~-v~~---~~~~y~e~---~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~ 342 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPY-LAS---DGDLCEEA---AEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFK 342 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCc-cCC---CCHHHHHH---HHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHH
Confidence 47999999999999999998763 232 23333221 224566655444321 111 112357999999999999
Q ss_pred HHHHHHHHhccccEEEEccccccccC
Q 009902 171 DSLRHWVVEYHVDGFRFDLASVLCRG 196 (523)
Q Consensus 171 ~~~~~w~~~~gvDGfR~D~~~~~~~~ 196 (523)
+.++..+.+.|||||=+|....++.+
T Consensus 343 ~~~~~~~~~~Gvdg~w~D~~E~~p~d 368 (635)
T PRK10426 343 EVIKKNMIGLGCSGWMADFGEYLPTD 368 (635)
T ss_pred HHHHHHHhhcCCCEEeeeCCCCCCCc
Confidence 99876555899999999987766543
No 79
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.95 E-value=0.0089 Score=62.28 Aligned_cols=97 Identities=23% Similarity=0.392 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCcCCcCCCCCHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELI 169 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~~p~v~~~i 169 (523)
.++++|++.+|++|++|++-+.+ ++.. +++-...+.......|+..++++... .+.+...-+|+.||++++.+
T Consensus 83 Pd~~~~~~~l~~~G~~~~~~~~P-~v~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~ 158 (441)
T PF01055_consen 83 PDPKQMIDELHDQGIKVVLWVHP-FVSN---DSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWW 158 (441)
T ss_dssp TTHHHHHHHHHHTT-EEEEEEES-EEET---TTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHH
T ss_pred cchHHHHHhHhhCCcEEEEEeec-ccCC---CCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHH
Confidence 35899999999999999999988 4444 33200011111113455544444111 12222345789999999999
Q ss_pred HHHHHHHHHhccccEEEEcccccc
Q 009902 170 LDSLRHWVVEYHVDGFRFDLASVL 193 (523)
Q Consensus 170 ~~~~~~w~~~~gvDGfR~D~~~~~ 193 (523)
.+.++..++.+|||||-+|.....
T Consensus 159 ~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 159 KEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHHHhccCCceEEeecCCcc
Confidence 999999996679999999975544
No 80
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=95.31 E-value=0.16 Score=55.26 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=35.6
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcc
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFE 47 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~ 47 (523)
+|+-|.....+=|+ |||..+.+-++.+++.|.+.+.|+|+..
T Consensus 148 ~qlySLrs~~~~GI-----GDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 148 VQLYTLRSEHNWGI-----GDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred eccccCCCCCCCCe-----ecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 35566666667788 9999988889999999999999999994
No 81
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.046 Score=52.60 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeecccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
.-|++|++.||+.||+||+|+-+.-
T Consensus 49 ~~~~ell~~Anklg~~vivDvnPsi 73 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNPSI 73 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 6699999999999999999996643
No 82
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=94.74 E-value=0.1 Score=58.46 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCcCCcCCCCCHHHHHHHH
Q 009902 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELIL 170 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~~p~v~~~i~ 170 (523)
+.++|++.+|++|+|+|.=+.+ ++.. +..+. .++.....++|..+.++... .|.+...=.||.||++++...
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~---d~gY~-~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~ 316 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKA---EEGYF-VYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWA 316 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCcc---CCCCH-HHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHH
Confidence 3689999999999999875544 2222 11121 22211223455544443211 111112225899999999999
Q ss_pred HHHHHHHHhccccEEEEcccc
Q 009902 171 DSLRHWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 171 ~~~~~w~~~~gvDGfR~D~~~ 191 (523)
+.++.++ +.|||||=+|+-.
T Consensus 317 ~~~k~l~-d~GVDG~W~DmnE 336 (978)
T PLN02763 317 NLVKDFV-SNGVDGIWNDMNE 336 (978)
T ss_pred HHHHHHh-cCCCcEEEccCCC
Confidence 9999988 6999999999754
No 83
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.65 E-value=0.18 Score=50.12 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 171 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~ 171 (523)
+|+++||+-|.++||.||-++- |.|+.. |...++...... . ........||..+|++.+.+.+
T Consensus 82 ~di~eiv~yA~~rgI~vIPEID~PGH~~a------~~~~~pel~~~~------~----~~~~~~~~l~~~~~~t~~f~~~ 145 (326)
T cd06564 82 EEFKELIAYAKDRGVNIIPEIDSPGHSLA------FTKAMPELGLKN------P----FSKYDKDTLDISNPEAVKFVKA 145 (326)
T ss_pred HHHHHHHHHHHHcCCeEeccCCCcHHHHH------HHHhhHHhcCCC------c----ccCCCcccccCCCHHHHHHHHH
Confidence 9999999999999999999986 688876 221111000000 0 0112234688999999999999
Q ss_pred HHHHHHHhcc
Q 009902 172 SLRHWVVEYH 181 (523)
Q Consensus 172 ~~~~w~~~~g 181 (523)
++...+.-+.
T Consensus 146 l~~E~~~~f~ 155 (326)
T cd06564 146 LFDEYLDGFN 155 (326)
T ss_pred HHHHHHHhcC
Confidence 9999996454
No 84
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.61 E-value=0.064 Score=52.42 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHH
Q 009902 94 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSL 173 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~ 173 (523)
+.++||+++|++|+|||+-+.+...... ..+-+..+..... .....+...-+|+.||+.++...+.+
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~--~~~~y~~~~~~~~-----------~~~~~~~~~~~D~tnp~a~~~w~~~~ 141 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRA--HEDQYPEMAKALG-----------VDPATEGPILFDLTNPKFMDAYFDNV 141 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCC--CcHHHHHHHHhcC-----------CCcccCCeEEecCCCHHHHHHHHHHH
Confidence 3799999999999999999987532110 1111111111000 00001111246899999998776666
Q ss_pred HHHHHhccccEEEEccc
Q 009902 174 RHWVVEYHVDGFRFDLA 190 (523)
Q Consensus 174 ~~w~~~~gvDGfR~D~~ 190 (523)
..-+.+.|||||=.|..
T Consensus 142 ~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 142 HRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred HHHHHhcCCcEEEecCC
Confidence 55554899999999953
No 85
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=94.48 E-value=0.15 Score=48.78 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
+++++.++.+|++|+||++-+--+|.+.. + ....+++-++.+.+.
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~-----------------~------------------~~~~~~~~~~~fa~~ 95 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAG-----------------F------------------ANNLSDAAAKAYAKA 95 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCC-----------------c------------------cccCCHHHHHHHHHH
Confidence 88999999999999999999866554430 0 012346667888888
Q ss_pred HHHHHHhccccEEEEcc
Q 009902 173 LRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~ 189 (523)
+..+++++|+||+=+|-
T Consensus 96 l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 96 IVDTVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHHHHhCCCceEEee
Confidence 88888899999999994
No 86
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=94.44 E-value=0.11 Score=51.89 Aligned_cols=134 Identities=12% Similarity=0.030 Sum_probs=82.0
Q ss_pred ccHHhHHhcchHHHHcCC--CEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC-CCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv--~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~~~~~dl~ 96 (523)
.+-..+.+-++.+++.|| ++|||=.=+.. +|.. +..|+ +|- +.+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-------------------~~~~---f~~d~~~FP-----------dp~ 67 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHTD-------------------GKRY---FTWDKKKFP-----------DPE 67 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHhC-------------------CCCc---eEeCcccCC-----------CHH
Confidence 456677777888877654 66776532211 2221 23343 343 378
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc---ccCCcCCcCCCCCHHHHHHHHHHH
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDSL 173 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~~p~v~~~i~~~~ 173 (523)
+||+++|++|+||++-+.+--.... ..+-+.+ .....|+..++.+... .+.+...-+|+.||++++...+.+
T Consensus 68 ~mi~~L~~~G~k~~~~~~P~v~~~~--~~~~y~e---~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 142 (339)
T cd06603 68 KMQEKLASKGRKLVTIVDPHIKRDD--GYYVYKE---AKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLF 142 (339)
T ss_pred HHHHHHHHCCCEEEEEecCceecCC--CCHHHHH---HHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHH
Confidence 9999999999999999875432210 1222211 1123455554443211 122333457999999999999999
Q ss_pred HHHHH--hccccEEEEcccc
Q 009902 174 RHWVV--EYHVDGFRFDLAS 191 (523)
Q Consensus 174 ~~w~~--~~gvDGfR~D~~~ 191 (523)
+..+. ..|+|||=+|...
T Consensus 143 ~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 143 SYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHhhcccCCCceEEeccCC
Confidence 98874 3689999999543
No 87
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=94.28 E-value=0.26 Score=51.87 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=32.4
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhc-chHHHHcCCCEEEECCCcccc
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFD 49 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~-Ldyl~~lGv~~I~L~Pi~~~~ 49 (523)
+|+-|.... -|+ |||-.+... .+.+++-|....+|.|+.+..
T Consensus 20 l~l~SL~s~--~GI-----GDfg~la~~~~d~~~~~g~~~wqllpl~p~~ 62 (513)
T TIGR00217 20 LQLYSLPSE--WGI-----GDLGDGAYKFIDFLKAGSQSVWQIHALYPAD 62 (513)
T ss_pred eccccCCCC--CCc-----cChHHHHHHHHHHHHHcCCcEEEeCCCCCCC
Confidence 355565433 667 999999865 589999999999999998863
No 88
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=93.54 E-value=0.17 Score=50.91 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHH
Q 009902 96 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 175 (523)
Q Consensus 96 ~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~ 175 (523)
.+|+..||++|+||++.. . .+ .-...+|+.|+.+++.+..
T Consensus 67 ~~~~~~A~~~~v~v~~~~------~----~~------------------------------~~~l~~~~~R~~fi~siv~ 106 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG------D----VP------------------------------LEQISNPTYRTQWIQQKVE 106 (358)
T ss_pred HHHHHHHHHcCCEEEEEC------c----cC------------------------------HHHcCCHHHHHHHHHHHHH
Confidence 589999999999999751 1 00 0014578999999999999
Q ss_pred HHHhccccEEEEcc
Q 009902 176 WVVEYHVDGFRFDL 189 (523)
Q Consensus 176 w~~~~gvDGfR~D~ 189 (523)
+++++|.||+-||-
T Consensus 107 ~~~~~gfDGIdIDw 120 (358)
T cd02875 107 LAKSQFMDGINIDI 120 (358)
T ss_pred HHHHhCCCeEEEcc
Confidence 99999999999993
No 89
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=93.53 E-value=0.56 Score=50.87 Aligned_cols=135 Identities=17% Similarity=0.188 Sum_probs=80.3
Q ss_pred ccHHhHHhcchHHHHcCCC--EEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGIN--AVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKE 97 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~--~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~ 97 (523)
+++..+.+..++.+++|+. .+|.-=-+.. .-.||+-=.-.|++ ++.
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~DiDyMd---------------------~ykDFTvd~~~fp~-----------~~~ 355 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVIDIDYMD---------------------GYKDFTVDKVWFPD-----------LKD 355 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeeeehhhhh---------------------cccceeeccccCcc-----------hHH
Confidence 7788888888889888885 4443211111 12344222223332 899
Q ss_pred HHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCC---ccccCCc-CCcCCCCCHHHHHHHHHHH
Q 009902 98 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQ---LLNYAGC-GNTLNCNHPVVMELILDSL 173 (523)
Q Consensus 98 Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~dln~~~p~v~~~i~~~~ 173 (523)
+++.+|++|+|+|+=+-++-... .. +..++.......+..+..+. +.+.++. ..=+|+.||++.....+.+
T Consensus 356 fv~~Lh~~G~kyvliidP~is~~----~~-y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~ 430 (805)
T KOG1065|consen 356 FVDDLHARGFKYVLIIDPFISTN----SS-YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDEL 430 (805)
T ss_pred HHHHHHhCCCeEEEEeCCccccC----cc-chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHH
Confidence 99999999999988776432221 11 11122221223333322221 1122211 1225889999999999999
Q ss_pred HHHHHhccccEEEEcccc
Q 009902 174 RHWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 174 ~~w~~~~gvDGfR~D~~~ 191 (523)
..+-++.++|||-+|+-.
T Consensus 431 ~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 431 KRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred HhhcccCCccceEEECCC
Confidence 888889999999999743
No 90
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=93.42 E-value=0.68 Score=46.02 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=74.8
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC------------CCCCCCCCC
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM------------SRYAAGGGG 87 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd------------~~~Gt~~~~ 87 (523)
=+...|.+-||.++..++|.++|=--=. ..|...+..|-.+- ..+=|.
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLtD~-----------------~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~--- 74 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLTDD-----------------QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ--- 74 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEeecC-----------------CcceeeecCcccccccccccccCCCCCCcCCH---
Confidence 4677888889999999999998743210 01111222211110 011144
Q ss_pred CCchHHHHHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHH
Q 009902 88 PLKASWEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 166 (523)
Q Consensus 88 ~~~~~~dl~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~ 166 (523)
+|+++||+-|.+|||.||-++- |.|+...-...|-+... +. ....+ .....+...||..+|++.
T Consensus 75 -----~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~-~~-~~~~~--------~~~~~~~~~l~~~~~~t~ 139 (329)
T cd06568 75 -----EDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNCD-GK-AKPLY--------TGIEVGFSSLDVDKPTTY 139 (329)
T ss_pred -----HHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhccC-CC-CCccc--------cccCCCCcccCCCCHHHH
Confidence 9999999999999999999997 68887511111111100 00 00000 011111346899999999
Q ss_pred HHHHHHHHHHHH
Q 009902 167 ELILDSLRHWVV 178 (523)
Q Consensus 167 ~~i~~~~~~w~~ 178 (523)
+.+.+++...+.
T Consensus 140 ~fl~~v~~E~~~ 151 (329)
T cd06568 140 EFVDDVFRELAA 151 (329)
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 91
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=93.39 E-value=0.23 Score=48.79 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=74.3
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCC------------CCCCCCCCCCC
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFS------------PMSRYAAGGGG 87 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~------------vd~~~Gt~~~~ 87 (523)
=++..|.+-||.++.+++|.++|==- .. ..|.+.+..|-. ....| |.
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~-D~----------------~~~~le~~~~p~l~~~g~~~~~~~~~~~y-T~--- 71 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLT-DD----------------QAWRIESKKFPELAEKGGQINPRSPGGFY-TY--- 71 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeee-cC----------------CCceEeeCccchhhhhcccccCCCCCCeE-CH---
Confidence 46777888899999999999876421 00 011111111111 11111 33
Q ss_pred CCchHHHHHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHH
Q 009902 88 PLKASWEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 166 (523)
Q Consensus 88 ~~~~~~dl~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~ 166 (523)
+|+++||+-|.++||.||-++- |.|+.. |...++......+ .+ ..+......||..+|++.
T Consensus 72 -----~di~elv~yA~~rgI~viPEiD~PGH~~a------~~~~~p~l~~~~~-----~~--~~~~~~~~~l~~~~~~t~ 133 (303)
T cd02742 72 -----AQLKDIIEYAAARGIEVIPEIDMPGHSTA------FVKSFPKLLTECY-----AG--LKLRDVFDPLDPTLPKGY 133 (303)
T ss_pred -----HHHHHHHHHHHHcCCEEEEeccchHHHHH------HHHhCHHhccCcc-----cc--CCCCCCCCccCCCCccHH
Confidence 9999999999999999999997 799876 2211110000000 00 001111246899999999
Q ss_pred HHHHHHHHHHHHhc
Q 009902 167 ELILDSLRHWVVEY 180 (523)
Q Consensus 167 ~~i~~~~~~w~~~~ 180 (523)
+.+.+++..++.-+
T Consensus 134 ~fl~~l~~e~~~lf 147 (303)
T cd02742 134 DFLDDLFGEIAELF 147 (303)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999533
No 92
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.27 E-value=0.11 Score=50.33 Aligned_cols=62 Identities=31% Similarity=0.386 Sum_probs=41.0
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 103 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH 103 (523)
-..+-++.+|++|+++|=|.-.++.-. .+.+ +| . +. ....+.|+++|+.|+
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~-----~~~~--------~~------~----~~------~~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQ-----EPNP--------GY------N----YD------ETYLARLDRIVDAAQ 72 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTS-----TTST--------TT------S----BT------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhc-----CCCC--------Cc------c----cc------HHHHHHHHHHHHHHH
Confidence 455568999999999999876543200 0000 11 1 11 123588999999999
Q ss_pred HCCCEEEEeec
Q 009902 104 GAGIEVILDVV 114 (523)
Q Consensus 104 ~~Gi~VilD~V 114 (523)
++||+||||+-
T Consensus 73 ~~gi~vild~h 83 (281)
T PF00150_consen 73 AYGIYVILDLH 83 (281)
T ss_dssp HTT-EEEEEEE
T ss_pred hCCCeEEEEec
Confidence 99999999984
No 93
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=93.21 E-value=0.094 Score=52.35 Aligned_cols=62 Identities=19% Similarity=0.125 Sum_probs=41.2
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
.++....+-|...+++||+.|+.+=...- - ++..-.+.|++|+
T Consensus 11 ~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe--------------------~-----------------~~~~~~~~~~~l~ 53 (357)
T PF05913_consen 11 SSFEENKAYIEKAAKYGFKRIFTSLHIPE--------------------D-----------------DPEDYLERLKELL 53 (357)
T ss_dssp S-HHHHHHHHHHHHCTTEEEEEEEE----------------------------------------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCcCC--------------------C-----------------CHHHHHHHHHHHH
Confidence 36777777788888999999997622111 0 0111248899999
Q ss_pred HHHHHCCCEEEEeeccccc
Q 009902 100 KALHGAGIEVILDVVYNHT 118 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~ 118 (523)
+.||++||+||+|+-+.-.
T Consensus 54 ~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 54 KLAKELGMEVIADISPKVL 72 (357)
T ss_dssp HHHHHCT-EEEEEE-CCHH
T ss_pred HHHHHCCCEEEEECCHHHH
Confidence 9999999999999975433
No 94
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.19 E-value=0.38 Score=42.57 Aligned_cols=68 Identities=9% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCC--CCCCCCCCchHHHHHHHH
Q 009902 22 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRY--AAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~--Gt~~~~~~~~~~dl~~Lv 99 (523)
-....+.+.+++++||++|.|.= .. +...-+.+..+. .+.+ +.. +-+..+.
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~--~~---------------~~~~~~yps~~~--~~~~~~~~~--------d~l~~~L 71 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQW--TG---------------YGGFAFYPSKLS--PGGFYMPPV--------DLLEMIL 71 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEE--ee---------------cCCcccCCcccc--CccccCCcc--------cHHHHHH
Confidence 45566789999999999999771 11 111122333331 2222 333 7799999
Q ss_pred HHHHHCCCEEEEeeccc
Q 009902 100 KALHGAGIEVILDVVYN 116 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~n 116 (523)
++|.+.||+|++-+-++
T Consensus 72 ~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 72 DAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHcCCEEEEeCCCC
Confidence 99999999999998654
No 95
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=93.17 E-value=3.4 Score=43.18 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.9
Q ss_pred ccHHhHHhcc-hHHHHcCCCEEEECCCcccc
Q 009902 20 GSYLGLIQKI-PHLLELGINAVELLPVFEFD 49 (523)
Q Consensus 20 Gd~~gl~~~L-dyl~~lGv~~I~L~Pi~~~~ 49 (523)
|||..+..++ +-+..-|.+.+.|+|+....
T Consensus 32 GDfgdla~~~~d~~~~~g~~~~qi~Plh~~~ 62 (520)
T COG1640 32 GDFGDLAYLFVDFLARHGQDYWQILPLHATG 62 (520)
T ss_pred cchhhHHHHHHHHHHHccCCeEEeccCCccc
Confidence 9999999987 45559999999999998765
No 96
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=93.11 E-value=0.35 Score=49.13 Aligned_cols=123 Identities=18% Similarity=0.174 Sum_probs=69.5
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~a 102 (523)
..+.+.|.-+|++|||+|-|..+.=.. -.|.+ ...|| +.|.++++.|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~-----lEP~e----------G~ydF------------------~~lD~~l~~a 56 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSW-----LEPEE----------GQYDF------------------SWLDRVLDLA 56 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHH-----H-SBT----------TB---------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhh-----ccCCC----------Ceeec------------------HHHHHHHHHH
Confidence 345667899999999999998763220 01111 11244 7799999999
Q ss_pred HHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhcc-
Q 009902 103 HGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYH- 181 (523)
Q Consensus 103 H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~g- 181 (523)
+++||+|||-+. .+..+ .|+.. ..++.-..+..+....+ +.....++.+|.+++++...++..++.|+
T Consensus 57 ~~~Gi~viL~~~-~~~~P-----~Wl~~----~~Pe~~~~~~~g~~~~~-g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~ 125 (374)
T PF02449_consen 57 AKHGIKVILGTP-TAAPP-----AWLYD----KYPEILPVDADGRRRGF-GSRQHYCPNSPAYREYARRFIRALAERYGD 125 (374)
T ss_dssp HCTT-EEEEEEC-TTTS------HHHHC----CSGCCC-B-TTTSBEEC-CCSTT-HCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCeEEEEec-ccccc-----cchhh----hcccccccCCCCCcCcc-CCccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999775 22222 14321 01111111222322222 22234567889999998888777765544
Q ss_pred ---ccEEEEcc
Q 009902 182 ---VDGFRFDL 189 (523)
Q Consensus 182 ---vDGfR~D~ 189 (523)
|-|+-+|.
T Consensus 126 ~p~vi~~~i~N 136 (374)
T PF02449_consen 126 HPAVIGWQIDN 136 (374)
T ss_dssp TTTEEEEEECC
T ss_pred cceEEEEEecc
Confidence 67888874
No 97
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=92.87 E-value=0.27 Score=48.50 Aligned_cols=54 Identities=30% Similarity=0.431 Sum_probs=34.0
Q ss_pred HhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHC
Q 009902 26 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 105 (523)
Q Consensus 26 ~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~ 105 (523)
.+-++.||+.|+|+|-|=- +.. | |. .-+-+. +...+|.++|++.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~----------P---------~~--------~g~~~~--------~~~~~~akrak~~ 70 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVN----------P---------YD--------GGYNDL--------EDVIALAKRAKAA 70 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS--------------------TT--------TTTTSH--------HHHHHHHHHHHHT
T ss_pred CCHHHHHHhcCCCeEEEEe-ccC----------C---------cc--------cccCCH--------HHHHHHHHHHHHC
Confidence 3457899999999987643 211 1 11 112222 8899999999999
Q ss_pred CCEEEEeecc
Q 009902 106 GIEVILDVVY 115 (523)
Q Consensus 106 Gi~VilD~V~ 115 (523)
||+|+||+=+
T Consensus 71 Gm~vlldfHY 80 (332)
T PF07745_consen 71 GMKVLLDFHY 80 (332)
T ss_dssp T-EEEEEE-S
T ss_pred CCeEEEeecc
Confidence 9999999943
No 98
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=92.84 E-value=0.35 Score=48.07 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=48.9
Q ss_pred HHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHH
Q 009902 95 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLR 174 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~ 174 (523)
.++|++++|++|++||+-+.+- +.. ...| . +...-.|+.||++++...+..+
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~-i~~---g~~~---------------~---------~~~~~pDftnp~ar~wW~~~~~ 117 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPV-ISY---GGGL---------------G---------SPGLYPDLGRPDVREWWGNQYK 117 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCc-eec---CccC---------------C---------CCceeeCCCCHHHHHHHHHHHH
Confidence 6889999999999999987642 111 0000 0 0011246889999999988888
Q ss_pred HHHHhccccEEEEcccc
Q 009902 175 HWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 175 ~w~~~~gvDGfR~D~~~ 191 (523)
.+. +.|||||=+|+..
T Consensus 118 ~l~-~~Gv~~~W~DmnE 133 (332)
T cd06601 118 YLF-DIGLEFVWQDMTT 133 (332)
T ss_pred HHH-hCCCceeecCCCC
Confidence 888 6899999999653
No 99
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=92.63 E-value=0.57 Score=47.03 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=75.5
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCC--------CCCCCCCCCCCCch
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSP--------MSRYAAGGGGPLKA 91 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~v--------d~~~Gt~~~~~~~~ 91 (523)
=....|.+-||.++.+++|.++|== ... -.|.+.+..|=.+ +..| |.
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~Hl-tDd----------------~~~rle~~~~P~Lt~~ga~~~~~~Y-T~------- 69 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHI-TDS----------------QSFPLESPSYPELSKKGAYSPSEVY-TP------- 69 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeE-EcC----------------CCceEeeCCCchhhhccCcCCCceE-CH-------
Confidence 3567788888999999999998631 000 0111222222111 1112 55
Q ss_pred HHHHHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHH
Q 009902 92 SWEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 170 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~ 170 (523)
+|+++||+-|.++||.||-++- |.|+.......|.+. ...... +.. + ....+...||..+|++.+.+.
T Consensus 70 -~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~----~~~~~~--~~~---~-~~~~~~~~L~~~~~~t~~fl~ 138 (348)
T cd06562 70 -EDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELL----TGCYAV--WRK---Y-CPEPPCGQLNPTNPKTYDFLK 138 (348)
T ss_pred -HHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhh----CCCCcc--ccc---c-ccCCCCccccCCChhHHHHHH
Confidence 9999999999999999999997 799876221111110 000000 000 0 001112358999999999999
Q ss_pred HHHHHHHHhcc
Q 009902 171 DSLRHWVVEYH 181 (523)
Q Consensus 171 ~~~~~w~~~~g 181 (523)
+++...++-+.
T Consensus 139 ~vl~E~~~lF~ 149 (348)
T cd06562 139 TLFKEVSELFP 149 (348)
T ss_pred HHHHHHHHhcC
Confidence 99999996454
No 100
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=92.62 E-value=0.5 Score=46.69 Aligned_cols=59 Identities=31% Similarity=0.484 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
+++++-|+.||++|+|||+-+= +. .. . ....++.-++.+.+.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiG----G~---~~------------~-------------------~~~~~~~~~~~fa~s 101 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIG----GA---NG------------H-------------------VDLNHTAQEDNFVDS 101 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEe----CC---CC------------c-------------------cccCCHHHHHHHHHH
Confidence 7799999999999999998861 11 00 0 013457778899999
Q ss_pred HHHHHHhccccEEEEcc
Q 009902 173 LRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~ 189 (523)
+..+++++|+||+=||-
T Consensus 102 l~~~~~~~g~DGiDiD~ 118 (312)
T cd02871 102 IVAIIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHHHHhCCCeEEEec
Confidence 99999999999999994
No 101
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=92.42 E-value=0.45 Score=45.46 Aligned_cols=62 Identities=23% Similarity=0.479 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
.++..++++||++|+||++-+- ++... . + . . -..+|+.|+.+++.
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sig-g~~~~-----~-~-----------------------~---~--~~~~~~~r~~fi~~ 90 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLA-GGSPP-----E-F-----------------------T---A--ALNDPAKRKALVDK 90 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEc-CCCCC-----c-c-----------------------h---h--hhcCHHHHHHHHHH
Confidence 6789999999999999999753 21111 0 0 0 0 23568899999999
Q ss_pred HHHHHHhccccEEEEcc
Q 009902 173 LRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~ 189 (523)
+..+++++|+||+-||-
T Consensus 91 lv~~~~~~~~DGIdiDw 107 (253)
T cd06545 91 IINYVVSYNLDGIDVDL 107 (253)
T ss_pred HHHHHHHhCCCceeEEe
Confidence 99999999999999994
No 102
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.31 E-value=1 Score=44.36 Aligned_cols=125 Identities=8% Similarity=0.102 Sum_probs=74.4
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCC-----CCCCCCCCCCCchHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM-----SRYAAGGGGPLKASWE 94 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd-----~~~Gt~~~~~~~~~~d 94 (523)
=....|.+.||.++.+++|.+++== ... ..|.+.+..|-.+- ..+=|. +|
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~Hl-tDd----------------~~~rle~~~~P~lt~~g~~~~~yT~--------~d 69 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHL-TDD----------------QGFRIESKKYPKLQQKASDGLYYTQ--------EQ 69 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEE-ecC----------------CCceeecCCCccccccCCCCCccCH--------HH
Confidence 4577788889999999999887631 010 01112222221110 011144 99
Q ss_pred HHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCcc-ccCCcCCcCCCCCHHHHHHHHHH
Q 009902 95 FKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL-NYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
+++||+-|.++||.||-++- |.|+.. |...++..... ....... .+....+.||..+|++.+.+.++
T Consensus 70 i~elv~yA~~rgI~vIPEId~PGH~~a------~~~~ypel~~~-----~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l 138 (311)
T cd06570 70 IREVVAYARDRGIRVVPEIDVPGHASA------IAVAYPELASG-----PGPYVIERGWGVFEPLLDPTNEETYTFLDNL 138 (311)
T ss_pred HHHHHHHHHHcCCEEEEeecCccchHH------HHHhCHHhccC-----CCccccccccccCCCccCCCChhHHHHHHHH
Confidence 99999999999999999986 689876 22211110000 0000000 01111245899999999999999
Q ss_pred HHHHHHhc
Q 009902 173 LRHWVVEY 180 (523)
Q Consensus 173 ~~~w~~~~ 180 (523)
+.-++.-+
T Consensus 139 ~~E~~~lF 146 (311)
T cd06570 139 FGEMAELF 146 (311)
T ss_pred HHHHHHhC
Confidence 99998543
No 103
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=91.86 E-value=0.4 Score=46.92 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=44.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccccEEEEccccccccCCC-C--CC---CCChHHHHHHHh--cccccCCeEe
Q 009902 157 TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTD-G--SP---LNAPPLIRAIAK--DAILSRCKII 223 (523)
Q Consensus 157 dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~-~--~~---~~~~~~~~~~~~--~~~~~~~~~i 223 (523)
.+++.+|+.++.|.+.+...+ +.|+|||-+|.+........ + +. .....+++.|.. ++..|++.+|
T Consensus 137 ~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 137 DVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred eEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 478899999999999988877 78999999997766532110 1 11 112345666643 2356777776
No 104
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=91.76 E-value=0.25 Score=52.03 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=37.8
Q ss_pred CcccCCCCCCCCCCCCCCCccH-HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSY-LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 79 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~-~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~ 79 (523)
||+-|.....+-|+ ||| .++.+-+|.+++.|++.++|.|+.+... ..++.|.+.+=+++||
T Consensus 1 ~~l~SLrs~~~~GI-----GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~-------------~~~sPY~p~S~~alNP 62 (496)
T PF02446_consen 1 VPLYSLRSPRSWGI-----GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGP-------------GNSSPYSPSSRFALNP 62 (496)
T ss_dssp --GGGS-SSS--SS-------SSHHHHHHHHHHHHCT--EEE----S-B-T-------------TCTTTTSBS-SSS--G
T ss_pred CCCCcCCCCCCCce-----ecHHHHHHHHHHHHHHcCCCeeccccccCCCC-------------CCCCCCCCCCCCcCCh
Confidence 57777777666688 999 9999999999999999999999998621 1334899999999998
Q ss_pred CCCC
Q 009902 80 RYAA 83 (523)
Q Consensus 80 ~~Gt 83 (523)
-|=+
T Consensus 63 lyI~ 66 (496)
T PF02446_consen 63 LYID 66 (496)
T ss_dssp GGS-
T ss_pred HHcC
Confidence 8854
No 105
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=91.52 E-value=0.19 Score=50.61 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=71.6
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCC-----------CCCCCCCCCCC
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSP-----------MSRYAAGGGGP 88 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~v-----------d~~~Gt~~~~~ 88 (523)
=.+..|.+-||.++.+++|.++|=-- .. ..|.+....|-.+ +. +=|.
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~-D~----------------~~~~~~~~~~p~l~~~ga~~~~~~~~-~yT~---- 72 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLS-DD----------------QGFRLESKSYPELTEKGAYRPSDAGG-YYTK---- 72 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEE-SS----------------TCB-BEBSTSTHHHHTTTESTTCTES-EBEH----
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEe-cC----------------CCCccccCCCccccccCccccccccc-cCCH----
Confidence 46778888899999999999987431 11 0111111111110 11 2244
Q ss_pred CchHHHHHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccC---CC---CCCcCeeeCCCCCccccCCcCCcCCCC
Q 009902 89 LKASWEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFR---GI---DNKVYYMVDGTGQLLNYAGCGNTLNCN 161 (523)
Q Consensus 89 ~~~~~dl~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~dln~~ 161 (523)
+|+++||+-|+++||+||-++- |.|+.. +....+ .. ....+.... ........||..
T Consensus 73 ----~di~~lv~yA~~~gI~VIPeid~PGH~~~------~l~~~p~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~ 136 (351)
T PF00728_consen 73 ----EDIRELVAYAKERGIEVIPEIDTPGHAEA------WLKAYPELGCSAWPEDKSWPNST------CWYPDNGVLDPS 136 (351)
T ss_dssp ----HHHHHHHHHHHHTT-EEEEEEEESSS-HH------HHHHHHHHCCCHTTCSSSCEEEE------TTSEEEEEE-TT
T ss_pred ----HHHHHHHHHHHHcCCceeeeccCchHHHH------HHHhCchhhcccccccccccccc------ccCCCcccCCCC
Confidence 9999999999999999999986 799886 221111 00 001111110 001111258999
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 009902 162 HPVVMELILDSLRHWVVEYH 181 (523)
Q Consensus 162 ~p~v~~~i~~~~~~w~~~~g 181 (523)
+|++.+.+.+++...+.-+.
T Consensus 137 ~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 137 NPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp SHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999996555
No 106
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=91.41 E-value=0.48 Score=49.99 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
-++++++.+.|+++||+||-|+.+
T Consensus 191 ~~Q~~~~~~~A~~~gI~L~gDlpi 214 (496)
T PF02446_consen 191 FKQWKAAKEYAREMGIGLIGDLPI 214 (496)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEeccc
Confidence 377889999999999999999986
No 107
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.04 E-value=1.4 Score=43.19 Aligned_cols=112 Identities=19% Similarity=0.123 Sum_probs=72.5
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECC--CcccchhhhhhcCCCCCCCCCccCCCcCcCCCC---CCCCCCCCCCCCchHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLP--VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSP---MSRYAAGGGGPLKASWE 94 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~P--i~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~v---d~~~Gt~~~~~~~~~~d 94 (523)
=+...|.+.+|.++.+|+|.++|=- -++. .++-.+ ...| |. +|
T Consensus 14 ~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~-----------------------~~~p~~~~~~~~y-T~--------~e 61 (301)
T cd06565 14 PKVSYLKKLLRLLALLGANGLLLYYEDTFPY-----------------------EGEPEVGRMRGAY-TK--------EE 61 (301)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEecceec-----------------------CCCcccccCCCCc-CH--------HH
Confidence 4577788889999999999988732 1111 111011 1112 43 99
Q ss_pred HHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHH
Q 009902 95 FKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSL 173 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~ 173 (523)
+++|++-|.++||.||-.+- +.|+.. |.. . +.|-..... ......||-.+|++.+.+.+.+
T Consensus 62 i~ei~~yA~~~gI~vIPeid~pGH~~~------~l~-~-----~~~~~l~~~------~~~~~~l~~~~~~t~~fi~~li 123 (301)
T cd06565 62 IREIDDYAAELGIEVIPLIQTLGHLEF------ILK-H-----PEFRHLREV------DDPPQTLCPGEPKTYDFIEEMI 123 (301)
T ss_pred HHHHHHHHHHcCCEEEecCCCHHHHHH------HHh-C-----ccccccccc------CCCCCccCCCChhHHHHHHHHH
Confidence 99999999999999999876 688875 221 1 011100000 0112458899999999999999
Q ss_pred HHHHHhcc
Q 009902 174 RHWVVEYH 181 (523)
Q Consensus 174 ~~w~~~~g 181 (523)
...+.-+.
T Consensus 124 ~ev~~~f~ 131 (301)
T cd06565 124 RQVLELHP 131 (301)
T ss_pred HHHHHhCC
Confidence 99995433
No 108
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=90.92 E-value=0.58 Score=43.53 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=63.1
Q ss_pred CCCCCCCccHHhHHh---c----chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCC
Q 009902 13 GLDPEIRGSYLGLIQ---K----IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGG 85 (523)
Q Consensus 13 g~~~~~~Gd~~gl~~---~----Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~ 85 (523)
|+....||+|-.+.- + |+++++|||++|.++- |.-.. +.
T Consensus 54 ~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~-----------------------G~~~i----------~~- 99 (237)
T TIGR03849 54 GIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISD-----------------------GSMEI----------SL- 99 (237)
T ss_pred CCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcC-----------------------CccCC----------CH-
Confidence 344455677655433 2 4599999999999884 22111 12
Q ss_pred CCCCchHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHH
Q 009902 86 GGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 165 (523)
Q Consensus 86 ~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v 165 (523)
++..+||+.++++|++|+-++=.-.... +. ..-
T Consensus 100 -------~~~~rlI~~~~~~g~~v~~EvG~K~~~~------------------------------------~~----~~~ 132 (237)
T TIGR03849 100 -------EERCNLIERAKDNGFMVLSEVGKKSPEK------------------------------------DS----ELT 132 (237)
T ss_pred -------HHHHHHHHHHHhCCCeEeccccccCCcc------------------------------------cc----cCC
Confidence 8899999999999999997753311100 00 001
Q ss_pred HHHHHHHHHHHHHhccccEEEEcc
Q 009902 166 MELILDSLRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 166 ~~~i~~~~~~w~~~~gvDGfR~D~ 189 (523)
-..+++.++.++ +.|++=.-+++
T Consensus 133 ~~~~i~~~~~~L-eAGA~~ViiEa 155 (237)
T TIGR03849 133 PDDRIKLINKDL-EAGADYVIIEG 155 (237)
T ss_pred HHHHHHHHHHHH-HCCCcEEEEee
Confidence 245677788899 79999999987
No 109
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.11 E-value=2 Score=43.22 Aligned_cols=78 Identities=21% Similarity=0.126 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 171 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~ 171 (523)
+|+++||+-|.++||+||-.+- |.|+...-...|-+... +..... ..........||..+|++.+.+.+
T Consensus 86 ~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~----~~~~~~------~~~~~~~~~~L~~~~~~t~~f~~~ 155 (357)
T cd06563 86 EEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCT----GGPGSV------VSVQGVVSNVLCPGKPETYTFLED 155 (357)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCC----CCCCcc------ccccCcCCCccCCCChhHHHHHHH
Confidence 9999999999999999999987 68987621112211110 000000 000111134589999999999999
Q ss_pred HHHHHHHhc
Q 009902 172 SLRHWVVEY 180 (523)
Q Consensus 172 ~~~~w~~~~ 180 (523)
++...+.-+
T Consensus 156 ll~E~~~lF 164 (357)
T cd06563 156 VLDEVAELF 164 (357)
T ss_pred HHHHHHHhC
Confidence 999998534
No 110
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=90.03 E-value=0.9 Score=45.57 Aligned_cols=119 Identities=18% Similarity=0.047 Sum_probs=63.5
Q ss_pred chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCE
Q 009902 29 IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIE 108 (523)
Q Consensus 29 Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~ 108 (523)
.+-+|+.|+..|-|+--+.. + ..-|.=..++|..++..++. +=+++|+++|+++|||
T Consensus 97 ~~~ak~aGakY~VlTakHHD---G-----------F~LW~S~~t~~~v~~~~~kr---------Div~El~~A~rk~Glk 153 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHD---G-----------FCLWPSKYTDYNVVNSGPKR---------DIVGELADACRKYGLK 153 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT----------------BSS--TT-SSBGGGGGGTS----------HHHHHHHHHHHTT-E
T ss_pred HHHHHHcCCCEEEeehhhcC---c-----------cccCCCCCCcccccCCCCCC---------CHHHHHHHHHHHcCCe
Confidence 45789999999998865543 0 11222234456566644444 7799999999999999
Q ss_pred EEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCH-HHHHHHHHHHHHHHHhccccEEEE
Q 009902 109 VILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP-VVMELILDSLRHWVVEYHVDGFRF 187 (523)
Q Consensus 109 VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p-~v~~~i~~~~~~w~~~~gvDGfR~ 187 (523)
+.+ +.|..+-.+|... . ....+... ..+..-..+ .+.+++..-++-++.+|.+|.+=+
T Consensus 154 ~G~-----Y~S~~dw~~~~~~----~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWf 212 (346)
T PF01120_consen 154 FGL-----YYSPWDWHHPDYP----P-----------DEEGDENG-PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWF 212 (346)
T ss_dssp EEE-----EEESSSCCCTTTT----S-----------SCHCHHCC---HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEE
T ss_pred EEE-----EecchHhcCcccC----C-----------CccCCccc-ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEe
Confidence 999 2222100111110 0 00000000 000000011 245577788888898999999999
Q ss_pred cccc
Q 009902 188 DLAS 191 (523)
Q Consensus 188 D~~~ 191 (523)
|...
T Consensus 213 Dg~~ 216 (346)
T PF01120_consen 213 DGGW 216 (346)
T ss_dssp ESTT
T ss_pred cCCC
Confidence 9653
No 111
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=89.86 E-value=2.7 Score=40.38 Aligned_cols=95 Identities=21% Similarity=0.332 Sum_probs=63.1
Q ss_pred ccHHhHHhcchHHHHc--CCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCC-CCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLEL--GINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~l--Gv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~~~~~dl~ 96 (523)
.+-+.+.+.++.+++. -+++|+|-.=+.. +|.... +..|+ +|- +.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~-------------------~~~~f~-~~~d~~~Fp-----------dp~ 69 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTD-------------------GYGDFT-FDWDAGKFP-----------NPK 69 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECccccc-------------------CCceee-eecChhhCC-----------CHH
Confidence 5677788888888774 4568888764443 111110 12332 443 378
Q ss_pred HHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHH
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 176 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w 176 (523)
+||+.+|++|++|++-+.+. |++...+.++..
T Consensus 70 ~~i~~l~~~g~~~~~~~~P~------------------------------------------------v~~w~~~~~~~~ 101 (265)
T cd06589 70 SMIDELHDNGVKLVLWIDPY------------------------------------------------IREWWAEVVKKL 101 (265)
T ss_pred HHHHHHHHCCCEEEEEeChh------------------------------------------------HHHHHHHHHHHh
Confidence 99999999999999976431 255566666665
Q ss_pred HHhccccEEEEcccccc
Q 009902 177 VVEYHVDGFRFDLASVL 193 (523)
Q Consensus 177 ~~~~gvDGfR~D~~~~~ 193 (523)
+.+.|||||=+|.....
T Consensus 102 ~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 102 LVSLGVDGFWTDMGEPS 118 (265)
T ss_pred hccCCCCEEeccCCCCC
Confidence 44899999999976544
No 112
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=87.41 E-value=0.58 Score=43.82 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=40.2
Q ss_pred CCCCCCccHHhHHh-------cchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCC
Q 009902 14 LDPEIRGSYLGLIQ-------KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGG 86 (523)
Q Consensus 14 ~~~~~~Gd~~gl~~-------~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~ 86 (523)
+....||+|-.+.- -|+++++|||++|.++= |.-..+ .
T Consensus 68 V~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSd-----------------------Gti~l~----------~-- 112 (244)
T PF02679_consen 68 VYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISD-----------------------GTIDLP----------E-- 112 (244)
T ss_dssp -EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE-------------------------SSS-------------H--
T ss_pred CeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecC-----------------------CceeCC----------H--
Confidence 33345677765543 27889999999999873 222221 1
Q ss_pred CCCchHHHHHHHHHHHHHCCCEEEEeec
Q 009902 87 GPLKASWEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 87 ~~~~~~~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
++..++|+.+++.|++|+-.+=
T Consensus 113 ------~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 113 ------EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ------HHHHHHHHHHCCTTSEEEEEES
T ss_pred ------HHHHHHHHHHHHCCCEEeeccc
Confidence 8899999999999999998873
No 113
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=87.34 E-value=5.2 Score=38.35 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=42.8
Q ss_pred CCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCC-CcCcCCCCCCCCCCCCCCCCchH
Q 009902 14 LDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGY-STINFFSPMSRYAAGGGGPLKAS 92 (523)
Q Consensus 14 ~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY-~~~d~~~vd~~~Gt~~~~~~~~~ 92 (523)
+..+++-+.+...+-+|+-+++|+..|.+--=+.. ++. ...|+..+ ...
T Consensus 23 ~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~------------------~~~~~~~d~~~~---~~~--------- 72 (273)
T PF10566_consen 23 VGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYG------------------WEKDDDFDFTKP---IPD--------- 72 (273)
T ss_dssp BSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCG------------------S--TTT--TT-B----TT---------
T ss_pred CCCcCCCCHHHHHHHHHHHHHcCCCEEEecccccc------------------cccccccccccc---CCc---------
Confidence 33455678999999999999999999998211110 111 12333332 222
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
.++++||+=|+++|++|+|=+
T Consensus 73 ~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 73 FDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp --HHHHHHHHHHTT-EEEEEE
T ss_pred cCHHHHHHHHHHcCCCEEEEE
Confidence 789999999999999999865
No 114
>PLN02950 4-alpha-glucanotransferase
Probab=87.03 E-value=1.2 Score=50.18 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=50.0
Q ss_pred cccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCC
Q 009902 2 NVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRY 81 (523)
Q Consensus 2 ~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~ 81 (523)
|+-|-....+=|+ |||.++.+-+|.+++.|.+.|+|+|+..... ......+..|.+.+=++++|-|
T Consensus 267 ~l~SLrS~~s~GI-----GDf~dl~~~id~~a~~G~~~~QilPl~~t~~---------~~~~~~SsPYs~~S~falNPly 332 (909)
T PLN02950 267 PVFSIRSEEDVGV-----GEFLDLKLLVDWAVKSGLHLVQLLPVNDTSV---------HGMWWDSYPYSSLSVFALHPLY 332 (909)
T ss_pred ecccCCCCCCCCe-----eCHHHHHHHHHHHHHcCCCEEEECCCCCCCC---------CCCCCCCCCcCcccccccChhh
Confidence 4555544444577 9999999999999999999999999987511 0000012378888888888888
Q ss_pred CCC
Q 009902 82 AAG 84 (523)
Q Consensus 82 Gt~ 84 (523)
=+.
T Consensus 333 I~l 335 (909)
T PLN02950 333 LRV 335 (909)
T ss_pred cCH
Confidence 764
No 115
>PLN02808 alpha-galactosidase
Probab=86.29 E-value=2.9 Score=42.19 Aligned_cols=72 Identities=4% Similarity=-0.122 Sum_probs=47.4
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCC---CCC---CCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCE
Q 009902 443 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP---PPK---RQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYS 516 (523)
Q Consensus 443 ~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~ 516 (523)
..+.+-+|.|...++...++++|.++.++++.++.. ... .+.+++....... ...+..+++|+|++
T Consensus 306 ~~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~g--------~~~~~~~~~v~pHg 377 (386)
T PLN02808 306 KDGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLWAHSTQS--------SVKGQLSALVESHA 377 (386)
T ss_pred ecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECCCCCccC--------cccceEEEEECCce
Confidence 356789999988767889999999988887776421 111 1234444332211 11133578999999
Q ss_pred EEEEEe
Q 009902 517 SILLEA 522 (523)
Q Consensus 517 ~~vl~~ 522 (523)
+++|+.
T Consensus 378 ~~~~rl 383 (386)
T PLN02808 378 CKMYVL 383 (386)
T ss_pred EEEEEE
Confidence 999985
No 116
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=86.01 E-value=1.3 Score=48.44 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=51.9
Q ss_pred CcccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC
Q 009902 1 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 80 (523)
Q Consensus 1 ~~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~ 80 (523)
+|+-|.....+=|+ |||-.+.+-+|.+++.|.+.|+|+||..... .++. ..+-.|.+.+=++.+|-
T Consensus 66 l~l~SLrS~~s~GI-----GDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~------~~~~---~dSSPYsp~S~fAlNPl 131 (745)
T PLN03236 66 LPVFSLRSAESVGA-----GDFGDLEALVDFAAEAGMSVVQLLPVNDTCV------HGTF---WDSYPYSSLSVHALHPL 131 (745)
T ss_pred eccccCCCCCCCCc-----ccHHHHHHHHHHHHHcCCCEEEECCCCcCCC------CCCC---CCCCCcCcccccccChH
Confidence 35666666666788 9999988889999999999999999987621 0000 01237899888888888
Q ss_pred CCCC
Q 009902 81 YAAG 84 (523)
Q Consensus 81 ~Gt~ 84 (523)
|=+.
T Consensus 132 yIdl 135 (745)
T PLN03236 132 YLKL 135 (745)
T ss_pred HcCH
Confidence 8664
No 117
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=85.91 E-value=7.3 Score=39.59 Aligned_cols=113 Identities=20% Similarity=0.176 Sum_probs=68.0
Q ss_pred chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCE
Q 009902 29 IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIE 108 (523)
Q Consensus 29 Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~ 108 (523)
.+-+|+.|+..|-|+--+.- | ..-|.=..++|..++...+. +=+++|+++|+++||+
T Consensus 87 a~~~k~AGakY~vlTaKHHD---------G-----F~lw~S~~t~~n~~~~~pkr---------Div~el~~A~rk~Glk 143 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHD---------G-----FCLWDSKYSNWNAVDTGPKR---------DLVGELADAVRKRGLK 143 (384)
T ss_pred HHHHHHcCCCeEEeeeeecC---------C-----ccccCCCCCCCcccCCCCCc---------chHHHHHHHHHHcCCe
Confidence 56789999999998765443 0 11222234466666654432 7799999999999999
Q ss_pred EEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHH---HHHHHHHHHhccccEE
Q 009902 109 VILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI---LDSLRHWVVEYHVDGF 185 (523)
Q Consensus 109 VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i---~~~~~~w~~~~gvDGf 185 (523)
+-+= |... .|. ++.|-.. +. ........+...+++ ..-++-.+..||-|.+
T Consensus 144 ~G~Y----~S~~-----DW~-------~p~y~~~--------~~--~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~l 197 (384)
T smart00812 144 FGLY----HSLF-----DWF-------NPLYAGP--------TS--SDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLL 197 (384)
T ss_pred EEEE----cCHH-----HhC-------CCccccc--------cc--cccccccchhHHHHHHHHHHHHHHHHhcCCCceE
Confidence 9982 2211 111 1122100 00 000112234556666 7777888888999999
Q ss_pred EEccc
Q 009902 186 RFDLA 190 (523)
Q Consensus 186 R~D~~ 190 (523)
=+|..
T Consensus 198 WfD~~ 202 (384)
T smart00812 198 WFDGG 202 (384)
T ss_pred EEeCC
Confidence 99965
No 118
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=85.13 E-value=1.6 Score=47.85 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=31.2
Q ss_pred ccHHhHHhcchHHH--HcCCCEEE-ECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCC
Q 009902 20 GSYLGLIQKIPHLL--ELGINAVE-LLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAG 84 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~--~lGv~~I~-L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~ 84 (523)
||+..+++-+-... -+|++-|+ +.|.-.. .+..|.+.+=+.+||-|=+.
T Consensus 165 gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~----------------~~SPYsp~Sr~alNPlyI~~ 216 (695)
T PRK11052 165 GDLKQMLEDVAKRGGDFIGLNPIHALYPANPE----------------SASPYSPSSRRWLNVIYIDV 216 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcCCCCCCC----------------CCCCcccccccccChHHcCH
Confidence 78888888764322 24466666 4443322 23379999888888888764
No 119
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=83.39 E-value=1.3 Score=43.73 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=37.5
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 103 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH 103 (523)
-..++|..+|++|+|+|..-=.+..- .+.+ ...||. |. .||.+|++.|+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~h------e~~~----------g~~df~------g~---------~dl~~f~~~a~ 73 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLH------EPEE----------GQFDFT------GN---------RDLDRFLDLAQ 73 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHH------SSBT----------TB---S------GG---------G-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCcceEEEecccccc------CCCC----------Cccccc------ch---------hhHHHHHHHHH
Confidence 34577899999999999875444330 1111 122331 22 78999999999
Q ss_pred HCCCEEEEeecc
Q 009902 104 GAGIEVILDVVY 115 (523)
Q Consensus 104 ~~Gi~VilD~V~ 115 (523)
++||.|||-.=+
T Consensus 74 ~~gl~vilrpGp 85 (319)
T PF01301_consen 74 ENGLYVILRPGP 85 (319)
T ss_dssp HTT-EEEEEEES
T ss_pred HcCcEEEecccc
Confidence 999999998644
No 120
>PRK15452 putative protease; Provisional
Probab=83.21 E-value=8.9 Score=39.74 Aligned_cols=19 Identities=11% Similarity=0.122 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 009902 93 WEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vil 111 (523)
+||++.|+.||++|.+|.+
T Consensus 46 edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 46 ENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 8999999999999999987
No 121
>TIGR03356 BGL beta-galactosidase.
Probab=82.41 E-value=7.5 Score=40.23 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=65.3
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCC-CCCCCCCCCchHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR-YAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~-~Gt~~~~~~~~~~dl~~L 98 (523)
.-+.-..+.++-||+||++++-++=-+.. |.|. -|. -.++.++-..++
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsr----------------------------i~p~g~~~---~n~~~~~~y~~~ 99 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPR----------------------------IFPEGTGP---VNPKGLDFYDRL 99 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhh----------------------------cccCCCCC---cCHHHHHHHHHH
Confidence 34667778899999999999987643322 1111 010 112335779999
Q ss_pred HHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHH
Q 009902 99 VKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 178 (523)
Q Consensus 99 v~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~ 178 (523)
|++|+++||++|+++. |.. .|. |... .. -|.++++.+.+.+.++.-++
T Consensus 100 i~~l~~~gi~pivtL~--Hfd-----~P~-----------~l~~--------~g------Gw~~~~~~~~f~~ya~~~~~ 147 (427)
T TIGR03356 100 VDELLEAGIEPFVTLY--HWD-----LPQ-----------ALED--------RG------GWLNRDTAEWFAEYAAVVAE 147 (427)
T ss_pred HHHHHHcCCeeEEeec--cCC-----ccH-----------HHHh--------cC------CCCChHHHHHHHHHHHHHHH
Confidence 9999999999999995 533 221 1000 00 15668888888888888887
Q ss_pred hcc
Q 009902 179 EYH 181 (523)
Q Consensus 179 ~~g 181 (523)
++|
T Consensus 148 ~~~ 150 (427)
T TIGR03356 148 RLG 150 (427)
T ss_pred HhC
Confidence 776
No 122
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=82.35 E-value=3.3 Score=42.96 Aligned_cols=142 Identities=13% Similarity=0.185 Sum_probs=90.7
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 100 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~ 100 (523)
|-..|++.++-.|+.||....|== .++.++... .. +.-|++.-..+|++- +..||+
T Consensus 307 t~e~ile~vk~akk~gvE~FvlDD------Gwfg~rndd----~~----slGDWlv~seKfPsg----------iE~li~ 362 (687)
T COG3345 307 TEEEILENVKEAKKFGVELFVLDD------GWFGGRNDD----LK----SLGDWLVNSEKFPSG----------IEELIE 362 (687)
T ss_pred CHHHHHHHHHHHhhcCeEEEEEcc------ccccccCcc----hh----hhhceecchhhcccc----------HHHHHH
Confidence 456788889999999976665432 222222111 11 233444555677764 889999
Q ss_pred HHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhc
Q 009902 101 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 180 (523)
Q Consensus 101 ~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~ 180 (523)
+.|++|+..=+=+-|--++. ++..|. ++|+|... -+|........+--|+..||.|.+++.+.+...+-..
T Consensus 363 ~I~e~Gl~fGIWlePemvs~---dSdlfr-----qHPDWvvk-~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~ 433 (687)
T COG3345 363 AIAENGLIFGIWLEPEMVSE---DSDLFR-----QHPDWVVK-VNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFH 433 (687)
T ss_pred HHHHcCCccceeecchhccc---chHHHh-----hCCCeEEe-cCCccccccccchhhhccChHHHHHhhhHHHHHHHhh
Confidence 99999999888887766666 444442 34677766 3333223333345578889999999998876655466
Q ss_pred cccEEEEcccccccc
Q 009902 181 HVDGFRFDLASVLCR 195 (523)
Q Consensus 181 gvDGfR~D~~~~~~~ 195 (523)
-||-+|-|.--.+.+
T Consensus 434 ~v~ylkwdmnr~l~k 448 (687)
T COG3345 434 LVSYLKWDMNRELFK 448 (687)
T ss_pred hHHHHHHHhCcceee
Confidence 777777776555543
No 123
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=81.57 E-value=4.6 Score=41.21 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHCCCEEEEeec-cccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 171 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~ 171 (523)
+|..++|+=|+-||||||.++. +.|+++ |-... ++ |.+.+-....--..|+| ||-.++.+.+.|.+
T Consensus 250 eDv~evV~yarlRGIRVlpEfD~PgHt~s------Wg~g~-----~~-fl~p~~~~~~~~~~~gp-lnP~~n~tydvls~ 316 (542)
T KOG2499|consen 250 EDVSEVVEYARLRGIRVLPEFDTPGHTGS------WGPGY-----PD-FLTPCWSSFEVQPPFGP-LNPTNNHTYDVLSE 316 (542)
T ss_pred HHHHHHHHHHHhccceeeecccCCccccc------ccCCC-----Cc-ccCCcccccccCCCCcC-CCCCchhHHHHHHH
Confidence 9999999999999999999997 799987 32111 11 11111111111112344 78788777777777
Q ss_pred HHHHHHH
Q 009902 172 SLRHWVV 178 (523)
Q Consensus 172 ~~~~w~~ 178 (523)
++.--.+
T Consensus 317 i~~dv~e 323 (542)
T KOG2499|consen 317 IFEDVSE 323 (542)
T ss_pred HHHHHHH
Confidence 6666553
No 124
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=81.37 E-value=3.3 Score=42.99 Aligned_cols=157 Identities=14% Similarity=0.086 Sum_probs=76.3
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCC-CC-CCCCCccCCCcCcCCCCCCCCCCCCC-----CCCchH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRN-PR-DHMVNTWGYSTINFFSPMSRYAAGGG-----GPLKAS 92 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~-~~-~~~~~~~gY~~~d~~~vd~~~Gt~~~-----~~~~~~ 92 (523)
=+...|.+-||.++-.++|.++|== ... +.++...++ |. ...-.+.++...+...+.|.+|+.+. ++.=--
T Consensus 19 ~~~~~ik~~Id~ma~~K~N~lHlHL-tDd-qgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~ 96 (445)
T cd06569 19 HSKETVLKLLDQMAAYKLNKLHLHL-TDD-EGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSR 96 (445)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEEe-ecC-CCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCH
Confidence 4677888888999999999988641 000 000000000 00 00001112222222223333332110 001112
Q ss_pred HHHHHHHHHHHHCCCEEEEeec-cccccCCCCC----CCcccccCCC-CCCcCeeeCCCC--CccccCC-cCCcCCCCCH
Q 009902 93 WEFKEMVKALHGAGIEVILDVV-YNHTNEADDA----NPYTTSFRGI-DNKVYYMVDGTG--QLLNYAG-CGNTLNCNHP 163 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V-~nH~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~-~~~dln~~~p 163 (523)
+|+++||+-|++|||.||-.+- |.|+...-.. -|-+...... ....|-..++.. .+....+ ....||-.+|
T Consensus 97 ~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~~~ 176 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPCMP 176 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCCch
Confidence 9999999999999999999987 6998751100 0000000000 000111111110 1101000 0135888999
Q ss_pred HHHHHHHHHHHHHHH
Q 009902 164 VVMELILDSLRHWVV 178 (523)
Q Consensus 164 ~v~~~i~~~~~~w~~ 178 (523)
++.+++.+++...+.
T Consensus 177 ~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 177 STYRFVDKVIDEIAR 191 (445)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999988884
No 125
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=80.87 E-value=3 Score=41.17 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHH
Q 009902 95 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLR 174 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~ 174 (523)
..++++.||++|+||++=|- +...... +...+ .--..+|+.|+.+++.+.
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~~~~-~~~~~----------------------------~~~l~~~~~r~~fi~~iv 96 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTNGNF-DSELA----------------------------HAVLSNPEARQRLINNIL 96 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCCCCC-CHHHH----------------------------HHHhcCHHHHHHHHHHHH
Confidence 46889999999999998763 2211100 00000 011356889999999999
Q ss_pred HHHHhccccEEEEcc
Q 009902 175 HWVVEYHVDGFRFDL 189 (523)
Q Consensus 175 ~w~~~~gvDGfR~D~ 189 (523)
.+++++|+||+-+|-
T Consensus 97 ~~l~~~~~DGidiDw 111 (313)
T cd02874 97 ALAKKYGYDGVNIDF 111 (313)
T ss_pred HHHHHhCCCcEEEec
Confidence 999899999999994
No 126
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=80.22 E-value=1.9 Score=30.47 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=34.1
Q ss_pred EEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEE
Q 009902 460 IYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 520 (523)
Q Consensus 460 ~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl 520 (523)
++|++|.++..++..+.....+.+|.++........ .+. ..+-.+|+++|.++.|+
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag~~~~D~tGn~~~~v-tid----~dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAGKTFYDYTGNSSETV-TID----EDGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTTEEEEETTSSSSSEE-EE-----TTSEEEEEE-TTEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCCCEEEEccCCCCCeE-EEC----CCeEEEEEECCCEEEEe
Confidence 466779999888888877655655555554332111 111 12336899999999987
No 127
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=79.53 E-value=9.5 Score=34.86 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHC--CCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHH
Q 009902 93 WEFKEMVKALHGA--GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 170 (523)
Q Consensus 93 ~dl~~Lv~~aH~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~ 170 (523)
+.....++++|++ |++|++-+--..... . . --..+++.|+.++
T Consensus 49 ~~~~~~i~~l~~~~~g~kv~~sigg~~~~~------------------~----------------~-~~~~~~~~~~~f~ 93 (210)
T cd00598 49 EPLKGALEELASKKPGLKVLISIGGWTDSS------------------P----------------F-TLASDPASRAAFA 93 (210)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCCCCC------------------C----------------c-hhhcCHHHHHHHH
Confidence 5566777778887 999999883111000 0 0 0135678899999
Q ss_pred HHHHHHHHhccccEEEEcc
Q 009902 171 DSLRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 171 ~~~~~w~~~~gvDGfR~D~ 189 (523)
+.+..+++++|+||+-+|-
T Consensus 94 ~~~~~~v~~~~~DGidiD~ 112 (210)
T cd00598 94 NSLVSFLKTYGFDGVDIDW 112 (210)
T ss_pred HHHHHHHHHcCCCceEEee
Confidence 9999999999999999994
No 128
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=79.50 E-value=8 Score=40.52 Aligned_cols=102 Identities=12% Similarity=0.189 Sum_probs=63.4
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
..+.-..+-++.+++||+++.-++=-+.. |-|. |+...-.++.++=..+||
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsR----------------------------i~P~-g~~~~~n~~~~~~Y~~~i 118 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSR----------------------------LFPQ-GDELTPNQQGIAFYRSVF 118 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeee----------------------------eeeC-CCCCCCCHHHHHHHHHHH
Confidence 34666677899999999999887654432 1111 110001234457789999
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHh
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 179 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~ 179 (523)
++|+++||++|+.+. |... | .|... .+.+ |.|+++.+.+.+.+...+++
T Consensus 119 ~~l~~~gi~p~VtL~--H~~~-----P-----------~~l~~-------~~GG------W~~~~~~~~F~~ya~~~~~~ 167 (474)
T PRK09852 119 EECKKYGIEPLVTLC--HFDV-----P-----------MHLVT-------EYGS------WRNRKMVEFFSRYARTCFEA 167 (474)
T ss_pred HHHHHcCCEEEEEee--CCCC-----C-----------HHHHH-------hcCC------CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999884 5543 1 11000 0011 45677777777777766665
Q ss_pred cc
Q 009902 180 YH 181 (523)
Q Consensus 180 ~g 181 (523)
+|
T Consensus 168 fg 169 (474)
T PRK09852 168 FD 169 (474)
T ss_pred hc
Confidence 54
No 129
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=79.23 E-value=2.5 Score=40.92 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=17.3
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcc
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFE 47 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~ 47 (523)
.|-......+++||+||+|+|-+--|-+
T Consensus 50 ad~~~C~rDi~~l~~LgiNtIRVY~vdp 77 (314)
T PF03198_consen 50 ADPEACKRDIPLLKELGINTIRVYSVDP 77 (314)
T ss_dssp G-HHHHHHHHHHHHHHT-SEEEES---T
T ss_pred cCHHHHHHhHHHHHHcCCCEEEEEEeCC
Confidence 3444444568999999999999765543
No 130
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=78.20 E-value=31 Score=33.13 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=68.4
Q ss_pred cchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHH-HHHHHHHH-HC
Q 009902 28 KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEF-KEMVKALH-GA 105 (523)
Q Consensus 28 ~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl-~~Lv~~aH-~~ 105 (523)
.+++|++||+|+|+|-++..... ++ ..+-=|-|..+.-+ .+|| -+.+=+++ ..
T Consensus 22 l~~ri~~~~~~tV~Lqaf~d~~g----------dg-~~~~~YFpnr~lpv--------------raDlf~rvawql~tr~ 76 (294)
T PF14883_consen 22 LIQRIKDMGINTVYLQAFADPDG----------DG-NADAVYFPNRHLPV--------------RADLFNRVAWQLRTRA 76 (294)
T ss_pred HHHHHHHcCCCEEEEEeeeCCCC----------CC-ceeeEEcCCCCCch--------------HHHHHHHHHHHHhhhh
Confidence 46889999999999999876511 10 01112333333221 2554 44442555 77
Q ss_pred CCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEE
Q 009902 106 GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGF 185 (523)
Q Consensus 106 Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGf 185 (523)
|++|..-+..=-..-. ..+.. +.-..... + ......|..-+|++|+.|.++..-....-.|||+
T Consensus 77 ~v~VyAWMPvlaf~lp--~~~~~---------~~~~~~~~----~-~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGI 140 (294)
T PF14883_consen 77 GVKVYAWMPVLAFDLP--KVKRA---------DEVRTDRP----D-PDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGI 140 (294)
T ss_pred CCEEEEeeehhhccCC--Ccchh---------hhccccCC----C-CCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeE
Confidence 9999988864111110 00000 00000000 0 1113456677899999999999999954599999
Q ss_pred EEc
Q 009902 186 RFD 188 (523)
Q Consensus 186 R~D 188 (523)
-|.
T Consensus 141 LFh 143 (294)
T PF14883_consen 141 LFH 143 (294)
T ss_pred EEc
Confidence 993
No 131
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=77.37 E-value=4.8 Score=41.35 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=38.4
Q ss_pred HHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcC-cCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009902 25 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI-NFFSPMSRYAAGGGGPLKASWEFKEMVKALH 103 (523)
Q Consensus 25 l~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~-d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH 103 (523)
..+-++++|+.|||+|-|.= ||+.. .....+|.+=.. ....-|.+.|+.|.
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi-----------------------~~~~~~~~~~~~p~~~~~-----~~~~~ld~~I~~a~ 126 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPI-----------------------GYWALQATDGDNPYLIGL-----TQLKILDEAINWAK 126 (407)
T ss_pred hhhHHHHHHHcCCcEEEccc-----------------------chhhhhccCCCCCCeecc-----hHHHHHHHHHHHHH
Confidence 34557999999999999753 22221 000023333211 00124677799999
Q ss_pred HCCCEEEEee
Q 009902 104 GAGIEVILDV 113 (523)
Q Consensus 104 ~~Gi~VilD~ 113 (523)
++||+|++|+
T Consensus 127 ~~gi~V~iD~ 136 (407)
T COG2730 127 KLGIYVLIDL 136 (407)
T ss_pred hcCeeEEEEe
Confidence 9999999998
No 132
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.20 E-value=30 Score=33.18 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=36.1
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 103 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH 103 (523)
.+.+.|+.++++|++.|.|.+-... .|. +.+ +. .++++|.+++.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~-------------------~~~--------~~~-~~--------~~~~~l~~~~~ 57 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPH-------------------AFA--------PDL-KA--------GGIKQIKALAQ 57 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcc-------------------ccc--------ccc-Cc--------hHHHHHHHHHH
Confidence 4788899999999999998531100 111 112 22 67899999999
Q ss_pred HCCCEEE
Q 009902 104 GAGIEVI 110 (523)
Q Consensus 104 ~~Gi~Vi 110 (523)
+.||+|.
T Consensus 58 ~~gl~v~ 64 (275)
T PRK09856 58 TYQMPII 64 (275)
T ss_pred HcCCeEE
Confidence 9999974
No 133
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=75.93 E-value=9.3 Score=36.97 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
.+|.+-|+.|+++|+||||-+
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEc
Confidence 689999999999999999976
No 134
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=75.80 E-value=14 Score=38.73 Aligned_cols=101 Identities=13% Similarity=0.171 Sum_probs=62.9
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 100 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~ 100 (523)
-+--..+-++.+|+||+++.-++=-+.. |-|. |+.+.-..+.++=..+||+
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsR----------------------------I~P~-G~~~~~N~~gl~~Y~~lid 117 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTR----------------------------IFPK-GDEAQPNEEGLKFYDDMFD 117 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEeccccee----------------------------eccC-CCCCCCCHHHHHHHHHHHH
Confidence 3445566789999999999876643322 1111 1110012344677899999
Q ss_pred HHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhc
Q 009902 101 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 180 (523)
Q Consensus 101 ~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~ 180 (523)
+|.++||+.|+.+. |... |. |... .+.| |.|+++.+.+.+.++..++++
T Consensus 118 ~l~~~GI~P~vTL~--H~dl-----P~-----------~L~~-------~yGG------W~n~~~~~~F~~Ya~~~f~~f 166 (477)
T PRK15014 118 ELLKYNIEPVITLS--HFEM-----PL-----------HLVQ-------QYGS------WTNRKVVDFFVRFAEVVFERY 166 (477)
T ss_pred HHHHcCCEEEEEee--CCCC-----CH-----------HHHH-------hcCC------CCChHHHHHHHHHHHHHHHHh
Confidence 99999999999884 5443 11 1100 0111 466888888888877777666
Q ss_pred c
Q 009902 181 H 181 (523)
Q Consensus 181 g 181 (523)
|
T Consensus 167 g 167 (477)
T PRK15014 167 K 167 (477)
T ss_pred c
Confidence 5
No 135
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=75.41 E-value=6.1 Score=32.55 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=15.8
Q ss_pred hHHhcchHHHHcCCCEEEECC
Q 009902 24 GLIQKIPHLLELGINAVELLP 44 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~P 44 (523)
.+.+-++.+.++|+..+|+.|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHHHHcCCCEEEEEc
Confidence 445568899999999999997
No 136
>PLN02692 alpha-galactosidase
Probab=75.28 E-value=19 Score=36.77 Aligned_cols=73 Identities=5% Similarity=-0.100 Sum_probs=46.7
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCC---CCCCC---CeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCE
Q 009902 443 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPP---PPPKR---QWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYS 516 (523)
Q Consensus 443 ~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~ 516 (523)
..+.+-++.+...++..+++++|.++.++++.++. ...++ ..+++........ ...+..+++|+|++
T Consensus 330 ~~~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW~~~~~g~-------~~~~~~~~~v~~Hg 402 (412)
T PLN02692 330 MEGDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLWEHKTLKQ-------HFVGNLTATVDSHA 402 (412)
T ss_pred ecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECCCCCccCc-------cccceEEEEECCce
Confidence 34678899998775677889999999888877652 11111 2344443322110 01133578999999
Q ss_pred EEEEEe
Q 009902 517 SILLEA 522 (523)
Q Consensus 517 ~~vl~~ 522 (523)
+++|+.
T Consensus 403 ~~l~rl 408 (412)
T PLN02692 403 CKMYIL 408 (412)
T ss_pred EEEEEE
Confidence 999985
No 137
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=73.87 E-value=20 Score=34.37 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=76.2
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~a 102 (523)
+-+.++..-||+-|+|++-+==-=+ ++..-|.-.|- +....++- ...-|++.+|++|
T Consensus 77 k~~de~fk~ikdn~~Na~ViD~Kdd----------------~G~lty~s~d~--~~~~~~sv-----~~f~Di~~~iKka 133 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVIDVKDD----------------YGELTYPSSDE--INKYTKSV-----NKFKDIEPVIKKA 133 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEEEecCC----------------CccEeccccch--hhhhhhcc-----ccccccHHHHHHH
Confidence 3445566888999999986532111 12223444432 22222221 1147799999999
Q ss_pred HHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccc
Q 009902 103 HGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHV 182 (523)
Q Consensus 103 H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gv 182 (523)
+++||.+|.-+|.=--+.-...+|+--.. ..++..|-... ++..........=.+--++.+++|=+.+++.-+ ++|+
T Consensus 134 Ke~giY~IARiVvFKD~~l~~~n~fk~av-~~~gKpw~~~~-ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~-~fGf 210 (400)
T COG1306 134 KENGIYAIARIVVFKDTILAKENPFKIAV-YKDGKPWKAFT-NGALRKESDGEHWVDAYDKNLWEYNVTIAKEAA-KFGF 210 (400)
T ss_pred HhcCeEEEEEEEEeeeeeEEeecCceEEE-EcCCCcchhhh-cccccccccceeeecccchhhhhhhHHHHHHHH-HcCc
Confidence 99999999998852111100001100000 00000010000 000000000000123456899999999999999 7999
Q ss_pred cEEEEccccccc
Q 009902 183 DGFRFDLASVLC 194 (523)
Q Consensus 183 DGfR~D~~~~~~ 194 (523)
|-+.+|-+.+-.
T Consensus 211 dEiQFDYIRFP~ 222 (400)
T COG1306 211 DEIQFDYIRFPA 222 (400)
T ss_pred cceeeeEEEccC
Confidence 999999776643
No 138
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=73.63 E-value=21 Score=34.00 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
++++.+ .+.|.++|.=+-+.-..+ -+.|....-....++|-...++. +.|+ -..-|-.|+=++.+.+.
T Consensus 64 eelr~~----~~gg~~pIAYlsIg~ae~---yR~Ywd~~w~~~~p~wLg~edP~----W~Gn-y~VkYW~~eWkdii~~~ 131 (300)
T COG2342 64 EELRTK----ADGGVKPIAYLSIGEAES---YRFYWDKYWLTGRPDWLGEEDPE----WPGN-YAVKYWEPEWKDIIRSY 131 (300)
T ss_pred HHHHHH----hcCCeeEEEEEechhhhh---hhhHhhhhhhcCCcccccCCCCC----CCCC-ceeeccCHHHHHHHHHH
Confidence 666654 455678887776655544 22222111112223433322222 2222 23567789999999999
Q ss_pred HHHHHHhccccEEEEcccccc
Q 009902 173 LRHWVVEYHVDGFRFDLASVL 193 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~~~~~ 193 (523)
+...+ +.|+||.-+|.+...
T Consensus 132 l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 132 LDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred HHHHH-HccCceEEEeeechH
Confidence 99999 799999999987655
No 139
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=73.39 E-value=16 Score=34.95 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCEEEEeec
Q 009902 93 WEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
+-.-++-++|+..||||++|+-
T Consensus 104 ~k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 104 KKAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HHHHHHHHHHHhcCcEEEeecc
Confidence 3344566788999999999994
No 140
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=72.42 E-value=35 Score=32.71 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=37.0
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 103 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH 103 (523)
++.+.++++.++|++.|.|.+.-+. .|... ++ +. +++++|.+.+.
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~-------------------~~~~~-------~~-~~--------~~~~~l~~~~~ 55 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPR-------------------SWKGV-------RL-SE--------ETAEKFKEALK 55 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCC-------------------CCCCC-------CC-CH--------HHHHHHHHHHH
Confidence 3557889999999999999764332 11111 11 22 77888888899
Q ss_pred HCCCEEEE
Q 009902 104 GAGIEVIL 111 (523)
Q Consensus 104 ~~Gi~Vil 111 (523)
+.||+|.+
T Consensus 56 ~~gl~ls~ 63 (273)
T smart00518 56 ENNIDVSV 63 (273)
T ss_pred HcCCCEEE
Confidence 99999654
No 141
>PRK01060 endonuclease IV; Provisional
Probab=71.09 E-value=30 Score=33.32 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=35.6
Q ss_pred HHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 009902 25 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 104 (523)
Q Consensus 25 l~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~ 104 (523)
+.+-|+.++++|+++|+|.+--+. .+.. +.+ +. +++++|.+.+.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~-------------------~~~~-------~~~-~~--------~~~~~lk~~~~~ 58 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQ-------------------QWKR-------KPL-EE--------LNIEAFKAACEK 58 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCC-------------------CCcC-------CCC-CH--------HHHHHHHHHHHH
Confidence 667789999999999999752111 1111 112 43 789999999999
Q ss_pred CCCEE
Q 009902 105 AGIEV 109 (523)
Q Consensus 105 ~Gi~V 109 (523)
.||++
T Consensus 59 ~gl~~ 63 (281)
T PRK01060 59 YGISP 63 (281)
T ss_pred cCCCC
Confidence 99985
No 142
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=70.97 E-value=23 Score=33.75 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEcc
Q 009902 161 NHPVVMELILDSLRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 161 ~~p~v~~~i~~~~~~w~~~~gvDGfR~D~ 189 (523)
.+++-|+.+.+.+..+++++|+||+=||-
T Consensus 92 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDw 120 (256)
T cd06546 92 DDDEDFERYYGQLRDMIRRRGLDGLDLDV 120 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 34666777788888888899999999993
No 143
>PLN02229 alpha-galactosidase
Probab=70.44 E-value=17 Score=37.14 Aligned_cols=72 Identities=3% Similarity=-0.197 Sum_probs=44.9
Q ss_pred CCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCC---CCCC---CeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEE
Q 009902 444 DSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP---PPKR---QWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSS 517 (523)
Q Consensus 444 ~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~ 517 (523)
++..-+|.|...++..+++++|.++.++++.++.. ..+. ..+++........ ...+..+++|+|+++
T Consensus 340 ~~~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~~lGl~~~~~~~VrDLW~~~dlg~-------~~~~~~~~~v~~Hg~ 412 (427)
T PLN02229 340 NGCQQVWAGPLSGDRLVVALWNRCSEPATITASWDVIGLESSISVSVRDLWKHKDLSE-------NVVGSFGAQVDAHDC 412 (427)
T ss_pred CCceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHHHcCCCCCCceEEEECCCCCccCc-------cccceEEEEECCCeE
Confidence 34588899987656668888999988888876421 1111 2344443322110 011234789999999
Q ss_pred EEEEe
Q 009902 518 ILLEA 522 (523)
Q Consensus 518 ~vl~~ 522 (523)
++|+.
T Consensus 413 ~l~rl 417 (427)
T PLN02229 413 HMYIF 417 (427)
T ss_pred EEEEE
Confidence 99985
No 144
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=70.06 E-value=10 Score=36.93 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=38.8
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCc-----CcCCCCCCCCCCCCCCCCchHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST-----INFFSPMSRYAAGGGGPLKASWEFKE 97 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~-----~d~~~vd~~~Gt~~~~~~~~~~dl~~ 97 (523)
.....-|+.+|+-|||+|.++=+.+...... + ..++..++.- .||..+++.|= +-+.+
T Consensus 30 ~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~-----~--n~~~~~~~~~~~~~~~d~~~~N~~YF----------~~~d~ 92 (289)
T PF13204_consen 30 EEWEQYLDTRKEQGFNVIQMNVLPQWDGYNT-----P--NRYGFAPFPDEDPGQFDFTRPNPAYF----------DHLDR 92 (289)
T ss_dssp HHHHHHHHHHHHTT--EEEEES-SSSS-B-----------TTS-BS-SSTT------TT----HH----------HHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCcccccc-----c--ccCCCcCCCCCCccccCCCCCCHHHH----------HHHHH
Confidence 3344458889999999999987766422110 0 0011222211 46666766664 66999
Q ss_pred HHHHHHHCCCEEEEeecccc
Q 009902 98 MVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 98 Lv~~aH~~Gi~VilD~V~nH 117 (523)
.|+.|.++||.+ ++|+=|
T Consensus 93 ~i~~a~~~Gi~~--~lv~~w 110 (289)
T PF13204_consen 93 RIEKANELGIEA--ALVPFW 110 (289)
T ss_dssp HHHHHHHTT-EE--EEESS-
T ss_pred HHHHHHHCCCeE--EEEEEE
Confidence 999999999887 466655
No 145
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=69.81 E-value=4.6 Score=40.25 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHH
Q 009902 96 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 175 (523)
Q Consensus 96 ~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~ 175 (523)
...+++||++|++|+-=+.+...+. ..+...+ =-.+++.+..+++-|..
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~----~~~~~~l---------------------------L~~~~~~~~~~a~kLv~ 97 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQ----VEWLEDF---------------------------LKKDEDGSFPVADKLVE 97 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCc----hHHHHHH---------------------------hccCcccchHHHHHHHH
Confidence 3567899999999998665432211 1111111 11114455667777777
Q ss_pred HHHhccccEEEEcccccc
Q 009902 176 WVVEYHVDGFRFDLASVL 193 (523)
Q Consensus 176 w~~~~gvDGfR~D~~~~~ 193 (523)
.++.||+||+=||.=...
T Consensus 98 lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 98 VAKYYGFDGWLINIETEL 115 (339)
T ss_pred HHHHhCCCceEeeeeccC
Confidence 788899999999954433
No 146
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=68.91 E-value=11 Score=29.52 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=36.4
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCC---CcEEEEcCC-C-CCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEE
Q 009902 443 YDSKFLAFTLHDNNGADIYLAFNAHD---FFVKVSLPP-P-PPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSS 517 (523)
Q Consensus 443 ~~~~v~af~R~~~~~~~~lvv~N~s~---~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~ 517 (523)
.++..+||+|-..+.+.+.|+.|.+. ...++.++. . ..+..+.+|+........ ..+..++++.-.+=
T Consensus 4 ~d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~tv~-------~~G~l~v~m~~G~P 76 (91)
T PF09260_consen 4 SDDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYTVD-------SNGTLTVPMSNGEP 76 (91)
T ss_dssp EETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE---------TTS-EEEEESTT--
T ss_pred ECCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEEEC-------CCCEEEEEEcCCce
Confidence 35789999995553445666667665 456777772 2 235556666655433211 11335667776666
Q ss_pred EEEEe
Q 009902 518 ILLEA 522 (523)
Q Consensus 518 ~vl~~ 522 (523)
.||..
T Consensus 77 ~Vl~P 81 (91)
T PF09260_consen 77 RVLYP 81 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 147
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.61 E-value=53 Score=31.55 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=37.2
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 103 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH 103 (523)
.+.+.++.++++|++.|.|.+.... . ...+.++ +. +++++|.+.+.
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~----------~--------~~~~~~~--------~~--------~~~~~l~~~l~ 62 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD----------E--------RLARLDW--------SK--------EERLSLVKAIY 62 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc----------c--------ccccccC--------CH--------HHHHHHHHHHH
Confidence 5667889999999999999642110 0 0111111 22 77999999999
Q ss_pred HCCCEEEE
Q 009902 104 GAGIEVIL 111 (523)
Q Consensus 104 ~~Gi~Vil 111 (523)
+.||+|..
T Consensus 63 ~~Gl~i~~ 70 (284)
T PRK13210 63 ETGVRIPS 70 (284)
T ss_pred HcCCCceE
Confidence 99999874
No 148
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=67.36 E-value=17 Score=36.91 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHCCCE-EEEeecccccc
Q 009902 93 WEFKEMVKALHGAGIE-VILDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~-VilD~V~nH~~ 119 (523)
++..+.++.+++.|+. |.+|++++.-+
T Consensus 144 ~~~~~a~~~l~~~g~~~v~~dli~GlPg 171 (375)
T PRK05628 144 GRAVAAAREARAAGFEHVNLDLIYGTPG 171 (375)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 8899999999999999 99999987644
No 149
>PTZ00445 p36-lilke protein; Provisional
Probab=67.21 E-value=15 Score=33.62 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 009902 93 WEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vil 111 (523)
.+|++|++++++.||+|++
T Consensus 78 pefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 78 PDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 7899999999999999975
No 150
>PLN03059 beta-galactosidase; Provisional
Probab=66.50 E-value=9 Score=42.52 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=41.8
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~a 102 (523)
.-..++|..+|++|+|+|..==++..- .|.+ | ..| |... .||.+|++.|
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~H------Ep~~--------G--~~d-------F~G~--------~DL~~Fl~la 107 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGH------EPSP--------G--NYY-------FEDR--------YDLVKFIKVV 107 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccccc------CCCC--------C--eee-------ccch--------HHHHHHHHHH
Confidence 345667889999999999854333320 0111 0 112 2234 9999999999
Q ss_pred HHCCCEEEEeecc
Q 009902 103 HGAGIEVILDVVY 115 (523)
Q Consensus 103 H~~Gi~VilD~V~ 115 (523)
++.||.|||=.=|
T Consensus 108 ~e~GLyvilRpGP 120 (840)
T PLN03059 108 QAAGLYVHLRIGP 120 (840)
T ss_pred HHcCCEEEecCCc
Confidence 9999999997543
No 151
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=66.43 E-value=10 Score=40.40 Aligned_cols=64 Identities=19% Similarity=0.356 Sum_probs=43.6
Q ss_pred HHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 009902 25 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 104 (523)
Q Consensus 25 l~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~ 104 (523)
..++|...|++|+++|.--=++.- + .|.+. .| .|..+ -||.+||+.||+
T Consensus 51 W~~~i~k~k~~Gln~IqtYVfWn~-H-----ep~~g-------~y----------~FsG~--------~DlvkFikl~~~ 99 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTYVFWNL-H-----EPSPG-------KY----------DFSGR--------YDLVKFIKLIHK 99 (649)
T ss_pred hHHHHHHHHhcCCceeeeeeeccc-c-----cCCCC-------cc----------cccch--------hHHHHHHHHHHH
Confidence 445688899999999985443331 1 01110 22 24555 999999999999
Q ss_pred CCCEEEEeecccccc
Q 009902 105 AGIEVILDVVYNHTN 119 (523)
Q Consensus 105 ~Gi~VilD~V~nH~~ 119 (523)
.|+.|+|=+=+=-++
T Consensus 100 ~GLyv~LRiGPyIca 114 (649)
T KOG0496|consen 100 AGLYVILRIGPYICA 114 (649)
T ss_pred CCeEEEecCCCeEEe
Confidence 999999987654333
No 152
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=66.32 E-value=13 Score=40.97 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEeeccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
-.+++++.+.|+++||+++-|+.+.
T Consensus 273 ~~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 273 DRQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeece
Confidence 3677888889999999999999873
No 153
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=66.12 E-value=59 Score=31.24 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=37.1
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~a 102 (523)
..+.+.|+.++++|++.|.|..-... ++. .+.. +. +++++|.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~-------------------~~~-------~~~~-~~--------~~~~~l~~~~ 54 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPR-------------------SWL-------SRPL-KK--------ERAEKFKAIA 54 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCC-------------------ccC-------CCCC-CH--------HHHHHHHHHH
Confidence 56788899999999999998751110 111 1112 33 7888888888
Q ss_pred HHC-CCEEEE
Q 009902 103 HGA-GIEVIL 111 (523)
Q Consensus 103 H~~-Gi~Vil 111 (523)
.++ |+.+.+
T Consensus 55 ~~~~~~~i~~ 64 (279)
T cd00019 55 EEGPSICLSV 64 (279)
T ss_pred HHcCCCcEEE
Confidence 888 777664
No 154
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=65.62 E-value=48 Score=33.15 Aligned_cols=52 Identities=27% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
+||++.|+.||++|.|+++=+ |-..- +.-.+.+.+.
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~--N~~~~------------------------------------------~~~~~~~~~~ 84 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAV--NTLLH------------------------------------------NDELETLERY 84 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEe--ccccc------------------------------------------cchhhHHHHH
Confidence 889999999999999988644 32221 0112336677
Q ss_pred HHHHHHhccccEEEEcc
Q 009902 173 LRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~ 189 (523)
+.... +.|+|++-+--
T Consensus 85 l~~l~-e~GvDaviv~D 100 (347)
T COG0826 85 LDRLV-ELGVDAVIVAD 100 (347)
T ss_pred HHHHH-HcCCCEEEEcC
Confidence 88888 89999998863
No 155
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=65.39 E-value=34 Score=35.96 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=46.7
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
..+.-..+-++.+|+||+++--++=-+.- |-|. |+.+.-.++.++=..+||
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsR----------------------------I~P~-G~~~~~N~~gl~~Y~~lI 120 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTR----------------------------IFPK-GDELEPNEAGLQFYEDIF 120 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhh----------------------------cccC-CCCCCCCHHHHHHHHHHH
Confidence 45667778899999999999877654332 1111 110001234457789999
Q ss_pred HHHHHCCCEEEEeecccccc
Q 009902 100 KALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~ 119 (523)
++|+++||+.|+-+- |..
T Consensus 121 d~L~~~GI~P~VTL~--H~d 138 (478)
T PRK09593 121 KECHKYGIEPLVTIT--HFD 138 (478)
T ss_pred HHHHHcCCEEEEEec--ccC
Confidence 999999999998773 554
No 156
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=64.05 E-value=9.9 Score=38.79 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=30.8
Q ss_pred CcCCC-----CCHHHHHHHHHHHHHHHHhccccEEEEcccccccc
Q 009902 156 NTLNC-----NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 195 (523)
Q Consensus 156 ~dln~-----~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~ 195 (523)
-.|+| .+|.++++|.+..+.-.+ =++|||+|..+.-+.
T Consensus 364 VKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTPl 406 (423)
T PF14701_consen 364 VKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTPL 406 (423)
T ss_pred eeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCcH
Confidence 45665 469999999999999885 799999998876543
No 157
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=63.83 E-value=35 Score=35.80 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=62.2
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
..+.-..+-++-+|+||+++--++=-+.- |-|. |+. .-..+.++=.++||
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsR----------------------------I~P~-G~g-~vN~~gl~~Y~~li 100 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSR----------------------------IFPD-GYG-EVNPKGVEYYHRLF 100 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhh----------------------------cCcC-CCC-CcCHHHHHHHHHHH
Confidence 34566667789999999999877643332 1111 110 01234467799999
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHh
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 179 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~ 179 (523)
++|.++||+.|+-+. |..- |. |... .. -|.|+++.+.+.+.++.-+++
T Consensus 101 d~l~~~GI~P~VTL~--H~dl-----P~-----------~L~~--------~G------GW~n~~~v~~F~~YA~~~~~~ 148 (469)
T PRK13511 101 AECHKRHVEPFVTLH--HFDT-----PE-----------ALHS--------NG------DWLNRENIDHFVRYAEFCFEE 148 (469)
T ss_pred HHHHHcCCEEEEEec--CCCC-----cH-----------HHHH--------cC------CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999874 5543 21 1110 01 145677777777776666665
Q ss_pred cc
Q 009902 180 YH 181 (523)
Q Consensus 180 ~g 181 (523)
+|
T Consensus 149 fg 150 (469)
T PRK13511 149 FP 150 (469)
T ss_pred hC
Confidence 54
No 158
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=63.63 E-value=22 Score=35.78 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=40.6
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|..|+++||+.|.|.. ++ .+..-+..+ .+-.+. ++..+.++.+++.|
T Consensus 101 e~l~~l~~~Gv~risiGv--qS--------------------~~~~~l~~l-gR~~~~--------~~~~~ai~~l~~~G 149 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGV--QS--------------------FRDDKLLFL-GRQHSA--------KNIAPAIETALKSG 149 (360)
T ss_pred HHHHHHHHcCCCEEEEec--cc--------------------CChHHHHHh-CCCCCH--------HHHHHHHHHHHHcC
Confidence 456777777888777654 11 111122233 334454 88999999999999
Q ss_pred CE-EEEeecccccc
Q 009902 107 IE-VILDVVYNHTN 119 (523)
Q Consensus 107 i~-VilD~V~nH~~ 119 (523)
+. |-+|+.++..+
T Consensus 150 ~~~v~~dli~GlPg 163 (360)
T TIGR00539 150 IENISLDLMYGLPL 163 (360)
T ss_pred CCeEEEeccCCCCC
Confidence 96 77999876543
No 159
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=62.84 E-value=26 Score=36.92 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=60.8
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|..|++.||+.|.|.| ++ .+..-+..+. +-.|. +++.+.++.|++.|
T Consensus 270 e~L~~Lk~~Gv~RISIGv--QS--------------------~~d~vLk~ig-R~ht~--------e~v~~ai~~ar~~G 318 (488)
T PRK08207 270 EKLEVLKKYGVDRISINP--QT--------------------MNDETLKAIG-RHHTV--------EDIIEKFHLAREMG 318 (488)
T ss_pred HHHHHHHhcCCCeEEEcC--Cc--------------------CCHHHHHHhC-CCCCH--------HHHHHHHHHHHhCC
Confidence 568899999999999887 22 1111122332 22344 99999999999999
Q ss_pred C-EEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEE
Q 009902 107 I-EVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGF 185 (523)
Q Consensus 107 i-~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGf 185 (523)
+ .|-+|+.++.-+. ..+.+.+.+.+-. ++++|.+
T Consensus 319 f~~In~DLI~GLPgE--------------------------------------------t~ed~~~tl~~l~-~L~pd~i 353 (488)
T PRK08207 319 FDNINMDLIIGLPGE--------------------------------------------GLEEVKHTLEEIE-KLNPESL 353 (488)
T ss_pred CCeEEEEEEeCCCCC--------------------------------------------CHHHHHHHHHHHH-hcCcCEE
Confidence 9 7889998864332 1245666777766 7999988
Q ss_pred EEccc
Q 009902 186 RFDLA 190 (523)
Q Consensus 186 R~D~~ 190 (523)
.+-..
T Consensus 354 sv~~L 358 (488)
T PRK08207 354 TVHTL 358 (488)
T ss_pred EEEec
Confidence 88644
No 160
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=62.04 E-value=30 Score=34.37 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEc
Q 009902 161 NHPVVMELILDSLRHWVVEYHVDGFRFD 188 (523)
Q Consensus 161 ~~p~v~~~i~~~~~~w~~~~gvDGfR~D 188 (523)
.+++.|+.+++.+..|++++|.||+-||
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiD 114 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDID 114 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEC
Confidence 5688999999999999999999999999
No 161
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=61.85 E-value=26 Score=28.36 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHhHHhcchHHHHcCCCEEEECCCccc
Q 009902 22 YLGLIQKIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
-+++..++..|++-|+++|+|..-...
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~ 77 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVK 77 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEec
Confidence 457778888899999999999998775
No 162
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=61.48 E-value=80 Score=30.80 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
..+.+-|++++++|.+||+-+= +. ....+ . .+..-++.+.+.
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~G----G~---~g~~~-----------------------~--------~~~~~~~~~~~a 95 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSFG----GA---SGTPL-----------------------A--------TSCTSADQLAAA 95 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEec----CC---CCCcc-----------------------c--------cCcccHHHHHHH
Confidence 6788889999999999998541 11 00000 0 023446777787
Q ss_pred HHHHHHhccccEEEEccc
Q 009902 173 LRHWVVEYHVDGFRFDLA 190 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~~ 190 (523)
+...++.||+||+=||--
T Consensus 96 ~~~~i~~y~~dgiDfDiE 113 (294)
T cd06543 96 YQKVIDAYGLTHLDFDIE 113 (294)
T ss_pred HHHHHHHhCCCeEEEecc
Confidence 788888999999999943
No 163
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=61.38 E-value=30 Score=34.59 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+-++.|++|++++|+.|-++++-+ +|.+.
T Consensus 77 ~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~ 105 (341)
T PF00724_consen 77 EQIPGLKKLADAVHAHGAKIIAQL--WHAGR 105 (341)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEE--E--GG
T ss_pred hHHHHHHHHHHHHHhcCccceeec--ccccc
Confidence 346889999999999999999987 67776
No 164
>PLN02950 4-alpha-glucanotransferase
Probab=61.37 E-value=31 Score=39.27 Aligned_cols=24 Identities=13% Similarity=0.103 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
-.+++++.+.|+++||+++-|+.+
T Consensus 460 ~~Ql~~~~~yA~~~Gi~L~GDLpi 483 (909)
T PLN02950 460 HSQLSEAAEYARKKGVVLKGDLPI 483 (909)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeec
Confidence 467888999999999999999987
No 165
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=61.18 E-value=39 Score=35.50 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=45.6
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
..+.-..+-++-+|+||+++--++=-+.- |-|. |+.+.-.++.++=.++||
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsR----------------------------I~P~-G~~~~~N~~gl~~Y~~li 114 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTR----------------------------IFPQ-GDELEPNEEGLQFYDDLF 114 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhh----------------------------cCcC-CCCCCCCHHHHHHHHHHH
Confidence 34555677799999999999876533321 2221 111001234457789999
Q ss_pred HHHHHCCCEEEEeecccccc
Q 009902 100 KALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~ 119 (523)
++|.++||+.|+-+ .|..
T Consensus 115 d~L~~~GI~P~VTL--~H~d 132 (476)
T PRK09589 115 DECLKQGIEPVVTL--SHFE 132 (476)
T ss_pred HHHHHcCCEEEEEe--cCCC
Confidence 99999999999877 4554
No 166
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=60.63 E-value=45 Score=34.93 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=66.7
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
..+--..+-+.-+|+||+++--++=-+.- |-|. |+. .-.++.++=.++||
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsR----------------------------I~P~-g~~-~~N~~gl~~Y~~li 99 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSR----------------------------IFPT-GYG-EVNEKGVEFYHKLF 99 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhh----------------------------ccCC-CCC-CcCHHHHHHHHHHH
Confidence 34566667788999999999876643322 1111 110 01234457789999
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHh
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 179 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~ 179 (523)
++|.++||+.|+-+ .|... |. |.. ... -|.|+++.+++.+.++.-+++
T Consensus 100 d~l~~~GI~P~VTL--~H~dl-----P~-----------~L~--------~~G------GW~n~~~v~~F~~YA~~~f~~ 147 (467)
T TIGR01233 100 AECHKRHVEPFVTL--HHFDT-----PE-----------ALH--------SNG------DFLNRENIEHFIDYAAFCFEE 147 (467)
T ss_pred HHHHHcCCEEEEec--cCCCC-----cH-----------HHH--------HcC------CCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999876 46543 22 110 001 257799999999999998888
Q ss_pred cccc
Q 009902 180 YHVD 183 (523)
Q Consensus 180 ~gvD 183 (523)
+| |
T Consensus 148 fg-d 150 (467)
T TIGR01233 148 FP-E 150 (467)
T ss_pred hC-C
Confidence 87 5
No 167
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=60.17 E-value=20 Score=34.13 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=42.2
Q ss_pred HHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 009902 25 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 104 (523)
Q Consensus 25 l~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~ 104 (523)
+.+.|+.++++||+.|.|...+.......+......+=....+.+...++..-.......+....+..+.+++.++.|++
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARA 96 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHH
Confidence 66778999999999999976433221111110000000000011111111100000000111122345779999999999
Q ss_pred CCCEEEE
Q 009902 105 AGIEVIL 111 (523)
Q Consensus 105 ~Gi~Vil 111 (523)
.|.++|.
T Consensus 97 lga~~i~ 103 (258)
T PRK09997 97 LGNKKIN 103 (258)
T ss_pred hCCCEEE
Confidence 9999874
No 168
>PLN02411 12-oxophytodienoate reductase
Probab=59.44 E-value=57 Score=33.29 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+-++.+++|++++|++|-++++-+ +|.+.
T Consensus 84 ~~i~~~~~l~~avH~~G~~i~~QL--~H~Gr 112 (391)
T PLN02411 84 EQVEAWKKVVDAVHAKGSIIFCQL--WHVGR 112 (391)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEec--cCCCC
Confidence 446889999999999999999887 57776
No 169
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=59.06 E-value=68 Score=31.47 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=56.5
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~a 102 (523)
..=.+.+..+++.|.|+=.-.|=-. .|.-...+.+- |++-+++|++|+++|
T Consensus 15 e~R~~l~~f~~~~kmN~YiYAPKdD--------------------pyhr~~Wre~Y---------p~~el~~l~~L~~~a 65 (306)
T PF07555_consen 15 EDRLDLIRFLGRYKMNTYIYAPKDD--------------------PYHRSKWREPY---------PEEELAELKELADAA 65 (306)
T ss_dssp HHHHHHHHHHHHTT--EEEE--TT---------------------TTTTTTTTS------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEECCCCC--------------------hHHHhhhcccC---------CHHHHHHHHHHHHHH
Confidence 3344456788899999877666111 23333332322 223358999999999
Q ss_pred HHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccc
Q 009902 103 HGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHV 182 (523)
Q Consensus 103 H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gv 182 (523)
++.|++++.=+-|. .++.+..++..+.|+.=+.... +.||
T Consensus 66 ~~~~V~Fv~aisPg---------------------------------------~~~~~s~~~d~~~L~~K~~ql~-~lGv 105 (306)
T PF07555_consen 66 KANGVDFVYAISPG---------------------------------------LDICYSSEEDFEALKAKFDQLY-DLGV 105 (306)
T ss_dssp HHTT-EEEEEEBGT---------------------------------------TT--TSHHHHHHHHHHHHHHHH-CTT-
T ss_pred HHcCCEEEEEECcc---------------------------------------cccccCcHHHHHHHHHHHHHHH-hcCC
Confidence 99999888766321 2233456777888888888888 8999
Q ss_pred cEEEE
Q 009902 183 DGFRF 187 (523)
Q Consensus 183 DGfR~ 187 (523)
.-|-|
T Consensus 106 r~Fai 110 (306)
T PF07555_consen 106 RSFAI 110 (306)
T ss_dssp -EEEE
T ss_pred CEEEE
Confidence 98876
No 170
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=58.34 E-value=1.2e+02 Score=28.67 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=41.9
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCc-------CCCCCCCCCCCCCCCCchHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTIN-------FFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d-------~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
.+.+.++-++++|++.|.|...+.......+.. ....|-.+.. +......+...+.......+.++
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~-------l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPYDWDAEALKAR-------LAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVA 87 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHH-------HHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHH
Confidence 466778888999999999965443211111100 0011222111 11111111111111122357788
Q ss_pred HHHHHHHHCCCEEEE
Q 009902 97 EMVKALHGAGIEVIL 111 (523)
Q Consensus 97 ~Lv~~aH~~Gi~Vil 111 (523)
++++.|++.|.++|.
T Consensus 88 ~~i~~a~~lg~~~i~ 102 (254)
T TIGR03234 88 LAIAYARALGCPQVN 102 (254)
T ss_pred HHHHHHHHhCCCEEE
Confidence 999999999999874
No 171
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=57.88 E-value=13 Score=39.41 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=44.0
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|+.|+++|++.|+|.. ++. ++ .-...++..... ++..+-++.+++.|
T Consensus 207 e~L~~L~~~G~~rVslGV--QS~-------------------~d-~VL~~inRght~---------~~v~~Ai~~lr~~G 255 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGV--QTI-------------------YN-DILERTKRGHTV---------RDVVEATRLLRDAG 255 (522)
T ss_pred HHHHHHHHcCCCEEEEEC--ccC-------------------CH-HHHHHhCCCCCH---------HHHHHHHHHHHHcC
Confidence 568999999999999885 221 11 111233333332 88999999999999
Q ss_pred CEEEEeecccccc
Q 009902 107 IEVILDVVYNHTN 119 (523)
Q Consensus 107 i~VilD~V~nH~~ 119 (523)
++|.+|+.++--+
T Consensus 256 ~~v~~~LM~GLPg 268 (522)
T TIGR01211 256 LKVVYHIMPGLPG 268 (522)
T ss_pred CeEEEEeecCCCC
Confidence 9999999886433
No 172
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=57.48 E-value=1.7e+02 Score=28.61 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=66.7
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 100 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~ 100 (523)
.+..+.+.+..+.++|+++|-|-|+.+...+.. .++..|++-. =+++-|+
T Consensus 52 s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~----------~gs~A~~~~g--------------------~v~~air 101 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTPPELKSE----------DGSEAYNPDN--------------------LVCRAIR 101 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCcccCCc----------ccccccCCCC--------------------hHHHHHH
Confidence 578888899999999999999999964311000 1111222211 1344444
Q ss_pred HHHHC--CCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHH
Q 009902 101 ALHGA--GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 178 (523)
Q Consensus 101 ~aH~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~ 178 (523)
++++. .|-||-|+.+..-...+ |... . .+=.-.|.+..+.+.+......
T Consensus 102 ~iK~~~p~l~vi~DVclc~YT~hG--HcGi-------------------l-------~~~~idND~Tl~~L~~~Avs~A- 152 (320)
T cd04823 102 AIKEAFPELGIITDVALDPYTSHG--HDGI-------------------V-------RDGGILNDETVEVLCKQALVQA- 152 (320)
T ss_pred HHHHhCCCcEEEEeeeccCCCCCC--ccee-------------------c-------cCCcCcCHHHHHHHHHHHHHHH-
Confidence 44444 89999999987666521 1111 0 0001456788888999888888
Q ss_pred hccccEE
Q 009902 179 EYHVDGF 185 (523)
Q Consensus 179 ~~gvDGf 185 (523)
+-|+|-.
T Consensus 153 ~AGADiV 159 (320)
T cd04823 153 EAGADIV 159 (320)
T ss_pred HhCCCEE
Confidence 6899854
No 173
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=57.34 E-value=27 Score=30.66 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=35.3
Q ss_pred CccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHH
Q 009902 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 19 ~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~L 98 (523)
.||+..+..++..-+- +++|.|+|++- || .|.-.+-+++...+.. -.+.+|
T Consensus 54 ~gD~~~~~~~~~~~~~--~D~vFlSPPWG----------Gp--------~Y~~~~~fdL~~~~~p---------~~~~~l 104 (163)
T PF09445_consen 54 CGDFFELLKRLKSNKI--FDVVFLSPPWG----------GP--------SYSKKDVFDLEKSMQP---------FNLEDL 104 (163)
T ss_dssp ES-HHHHGGGB--------SEEEE---BS----------SG--------GGGGSSSB-TTTSSSS-----------HHHH
T ss_pred eCCHHHHHhhcccccc--ccEEEECCCCC----------Cc--------cccccCccCHHHccCC---------CCHHHH
Confidence 3777777666543222 89999999763 23 4555556666555554 568888
Q ss_pred HHHHHHCCCEEEEeec
Q 009902 99 VKALHGAGIEVILDVV 114 (523)
Q Consensus 99 v~~aH~~Gi~VilD~V 114 (523)
++.+.+.--.|++=+.
T Consensus 105 ~~~~~~~t~nv~l~LP 120 (163)
T PF09445_consen 105 LKAARKITPNVVLFLP 120 (163)
T ss_dssp HHHHHHH-S-EEEEEE
T ss_pred HHHHHhhCCCEEEEeC
Confidence 8888777777776554
No 174
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=56.94 E-value=1.7e+02 Score=28.62 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=66.1
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
=.+..+.+.+..+.++|+++|-|-|+.+... -|+..|+..-+|.-. +++-|
T Consensus 48 ~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~--------------------------Kd~~~gs~a~~~~g~---v~~ai 98 (320)
T cd04824 48 YGVNRLEEFLRPLVAKGLRSVILFGVPLKPG--------------------------KDDRSGSAADDEDGP---VIQAI 98 (320)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEeCCCcccc--------------------------CCcCccccccCCCCh---HHHHH
Confidence 3578888999999999999999999953210 011112222222111 33444
Q ss_pred HHHHHC--CCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHH
Q 009902 100 KALHGA--GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWV 177 (523)
Q Consensus 100 ~~aH~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~ 177 (523)
+++++. .|-||-|+.+..-...+ |... ... .+ .-.|.+..+.+.+......
T Consensus 99 r~iK~~~pdl~vi~Dvclc~YT~hG--HcGi-------------------l~~-~g-----~vdND~Tl~~L~k~Avs~A 151 (320)
T cd04824 99 KLIREEFPELLIACDVCLCEYTSHG--HCGI-------------------LYE-DG-----TINNEASVKRLAEVALAYA 151 (320)
T ss_pred HHHHHhCCCcEEEEeeeccCCCCCC--ccee-------------------ECC-CC-----cCcCHHHHHHHHHHHHHHH
Confidence 444443 89999999987655421 1111 000 00 1346788888999888888
Q ss_pred HhccccEE
Q 009902 178 VEYHVDGF 185 (523)
Q Consensus 178 ~~~gvDGf 185 (523)
+-|+|-.
T Consensus 152 -~AGADiV 158 (320)
T cd04824 152 -KAGAHIV 158 (320)
T ss_pred -HhCCCEE
Confidence 6899854
No 175
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=56.23 E-value=55 Score=31.76 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCEEEEeecccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
++..+.++.+|+.||+|..-+++.+
T Consensus 158 ~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 158 DDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 7888899999999999999888765
No 176
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=55.81 E-value=1.2e+02 Score=30.76 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
-++.|++|++++|++|-++++-+. |.+.
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~--H~G~ 108 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELW--HGGA 108 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecc--cCCC
Confidence 358899999999999999999874 8876
No 177
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=55.40 E-value=41 Score=32.13 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHH
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 172 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~ 172 (523)
+++.+-|.+|+++||+|+-=+.++--+ |-++.|.+.
T Consensus 168 ~~y~dav~r~rkrgIkvc~HiI~GLPg--------------------------------------------E~~~~mleT 203 (312)
T COG1242 168 ACYVDAVKRLRKRGIKVCTHLINGLPG--------------------------------------------ETRDEMLET 203 (312)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeCCCC--------------------------------------------CCHHHHHHH
Confidence 889999999999999998766543211 235788899
Q ss_pred HHHHHHhccccEEEEcccccc
Q 009902 173 LRHWVVEYHVDGFRFDLASVL 193 (523)
Q Consensus 173 ~~~w~~~~gvDGfR~D~~~~~ 193 (523)
++.-. +.||||+-+--.+-+
T Consensus 204 ak~v~-~~~v~GIKlH~Lhvv 223 (312)
T COG1242 204 AKIVA-ELGVDGIKLHPLHVV 223 (312)
T ss_pred HHHHH-hcCCceEEEEEEEEe
Confidence 99766 899999999765554
No 178
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=55.25 E-value=35 Score=35.39 Aligned_cols=27 Identities=15% Similarity=0.475 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHCCCEEE-Eeecccccc
Q 009902 93 WEFKEMVKALHGAGIEVI-LDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vi-lD~V~nH~~ 119 (523)
++..+.++.+++.|+.+| +|+.++.-+
T Consensus 177 ~~~~~ai~~l~~~g~~~i~~dlI~GlP~ 204 (430)
T PRK08208 177 ADVHQALEWIRAAGFPILNIDLIYGIPG 204 (430)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 889999999999999865 999875444
No 179
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=54.61 E-value=56 Score=31.33 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHH
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 169 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i 169 (523)
..++.++++++.|+++|++|.+-+.--.... .+++
T Consensus 106 ~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~---------------------------------------------~~~~ 140 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYEVFFNLMAISGYS---------------------------------------------DEEL 140 (266)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEEEEeecCCC---------------------------------------------HHHH
Confidence 4468889999999999988776664321110 2567
Q ss_pred HHHHHHHHHhccccEEEE-cccccc
Q 009902 170 LDSLRHWVVEYHVDGFRF-DLASVL 193 (523)
Q Consensus 170 ~~~~~~w~~~~gvDGfR~-D~~~~~ 193 (523)
.+.++... +.|+|.+++ |+++.+
T Consensus 141 ~~~~~~~~-~~g~~~i~l~DT~G~~ 164 (266)
T cd07944 141 LELLELVN-EIKPDVFYIVDSFGSM 164 (266)
T ss_pred HHHHHHHH-hCCCCEEEEecCCCCC
Confidence 77777776 789999998 466655
No 180
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=53.54 E-value=45 Score=34.87 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCC-EEEEeecccccc
Q 009902 93 WEFKEMVKALHGAGI-EVILDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi-~VilD~V~nH~~ 119 (523)
++..+.++.+++.|+ .|-+|+.++.-+
T Consensus 187 ~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (453)
T PRK09249 187 EFTFALVEAARELGFTSINIDLIYGLPK 214 (453)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 889999999999999 799999876544
No 181
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=53.47 E-value=35 Score=32.25 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
+++++|++.||..||.+++++
T Consensus 138 ~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 138 SQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HHHHHHHHHHHHcCCceEEEE
Confidence 789999999999999999998
No 182
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=53.31 E-value=33 Score=33.53 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEc
Q 009902 161 NHPVVMELILDSLRHWVVEYHVDGFRFD 188 (523)
Q Consensus 161 ~~p~v~~~i~~~~~~w~~~~gvDGfR~D 188 (523)
.+++.|+.+++.+..+++++|+||+-||
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiD 115 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLD 115 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeec
Confidence 5688999999999999999999999999
No 183
>PRK05660 HemN family oxidoreductase; Provisional
Probab=53.30 E-value=43 Score=34.00 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=42.0
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|..|+++||+.|.|.. ++ .+..-+..+. +..+. ++..+-++.+++.|
T Consensus 108 e~l~~Lk~~Gv~risiGv--qS--------------------~~~~~L~~l~-r~~~~--------~~~~~ai~~~~~~G 156 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV--QS--------------------FSEEKLKRLG-RIHGP--------DEAKRAAKLAQGLG 156 (378)
T ss_pred HHHHHHHHcCCCEEEecc--Cc--------------------CCHHHHHHhC-CCCCH--------HHHHHHHHHHHHcC
Confidence 667888899999888874 22 2222222333 22344 88888899999999
Q ss_pred CEE-EEeecccccc
Q 009902 107 IEV-ILDVVYNHTN 119 (523)
Q Consensus 107 i~V-ilD~V~nH~~ 119 (523)
++. -+|+.++..+
T Consensus 157 ~~~v~~dli~Glpg 170 (378)
T PRK05660 157 LRSFNLDLMHGLPD 170 (378)
T ss_pred CCeEEEEeecCCCC
Confidence 975 4999876443
No 184
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=52.99 E-value=93 Score=30.98 Aligned_cols=98 Identities=13% Similarity=0.139 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCC-CCcccccC--CCCCCcCeeeCCCCCccccCCcCCcCCCCC---H
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDA-NPYTTSFR--GIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---P 163 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dln~~~---p 163 (523)
+.++.|++|++++|+.|-++++-+ +|.+..... .+|..... .......-.+.+...........| -.... .
T Consensus 74 ~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p-~~mt~~eI~ 150 (336)
T cd02932 74 EQIEALKRIVDFIHSQGAKIGIQL--AHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTP-RELTREEIA 150 (336)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCC-CcCCHHHHH
Confidence 346889999999999999998887 577763211 01100000 000000000111100000000011 01122 3
Q ss_pred HHHHHHHHHHHHHHHhccccEEEEcccc
Q 009902 164 VVMELILDSLRHWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 164 ~v~~~i~~~~~~w~~~~gvDGfR~D~~~ 191 (523)
++.+.+.++++... +.|+||+-+.+++
T Consensus 151 ~ii~~~~~aA~~a~-~aGfDgVei~~~~ 177 (336)
T cd02932 151 EVVDAFVAAARRAV-EAGFDVIEIHAAH 177 (336)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEcccc
Confidence 46666667788887 6899999999775
No 185
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=52.70 E-value=44 Score=34.89 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCE-EEEeecccccc
Q 009902 93 WEFKEMVKALHGAGIE-VILDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~-VilD~V~nH~~ 119 (523)
++..+.++.+++.|+. |-+|+.++.-+
T Consensus 188 ~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 188 EMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 8899999999999997 88999876433
No 186
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=52.40 E-value=24 Score=32.30 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
++.++||+.|-+.|..|.-++
T Consensus 119 eek~~lIe~a~d~Gf~vlsEv 139 (258)
T COG1809 119 EEKCRLIERAVDEGFMVLSEV 139 (258)
T ss_pred HHHHHHHHHHHhcccEEehhh
Confidence 999999999999999887654
No 187
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=52.17 E-value=20 Score=35.41 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
+++.+.++.+|+.||+|.+++.++
T Consensus 155 ~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 155 EDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEec
Confidence 899999999999999999999886
No 188
>PRK15447 putative protease; Provisional
Probab=51.54 E-value=32 Score=33.67 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=38.1
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
|++..+.. .|++.|+++||+.- +. |.-. ..| +. +++++.|
T Consensus 15 ~~~~~~~~---~~~~~gaDaVY~g~--~~--------------------~~~R------~~f-~~--------~~l~e~v 54 (301)
T PRK15447 15 ETVRDFYQ---RAADSPVDIVYLGE--TV--------------------CSKR------REL-KV--------GDWLELA 54 (301)
T ss_pred CCHHHHHH---HHHcCCCCEEEECC--cc--------------------CCCc------cCC-CH--------HHHHHHH
Confidence 66666554 57889999999983 11 1111 023 33 9999999
Q ss_pred HHHHHCCCEEEEee
Q 009902 100 KALHGAGIEVILDV 113 (523)
Q Consensus 100 ~~aH~~Gi~VilD~ 113 (523)
+.||++|.+|++=+
T Consensus 55 ~~~~~~gkkvyva~ 68 (301)
T PRK15447 55 ERLAAAGKEVVLST 68 (301)
T ss_pred HHHHHcCCEEEEEe
Confidence 99999999999833
No 189
>PLN02849 beta-glucosidase
Probab=51.44 E-value=59 Score=34.42 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=45.6
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
..+--..+-++-+|+||+++--++=-+.- |-|. |+. .-.++.++=.++||
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsR----------------------------I~P~-G~g-~vN~~gl~fY~~li 125 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSR----------------------------LIPN-GRG-SVNPKGLQFYKNFI 125 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHh----------------------------cCcC-CCC-CCCHHHHHHHHHHH
Confidence 34666777899999999999776543321 1111 110 01234457789999
Q ss_pred HHHHHCCCEEEEeecccccc
Q 009902 100 KALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~ 119 (523)
++|+++||+.|+-+ .|..
T Consensus 126 d~l~~~GI~P~VTL--~H~d 143 (503)
T PLN02849 126 QELVKHGIEPHVTL--FHYD 143 (503)
T ss_pred HHHHHcCCeEEEee--cCCC
Confidence 99999999999877 3554
No 190
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.08 E-value=79 Score=31.52 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
-++.|++|++++|+.|-++++-+ +|.+.
T Consensus 80 ~i~~~~~l~~~vh~~G~~~~~Ql--~h~G~ 107 (338)
T cd04733 80 DLEAFREWAAAAKANGALIWAQL--NHPGR 107 (338)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc--cCCCc
Confidence 35889999999999999998887 68776
No 191
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=50.92 E-value=35 Score=29.40 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=39.1
Q ss_pred ccHHhHHhcchHHHHcCCCEEE-ECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVE-LLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~-L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~L 98 (523)
.|+..+.+-.+-|.++||..-- +. +---|. +.+.++
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~Vv-----------------------------------SAHRTP--------e~m~~y 49 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVRVV-----------------------------------SAHRTP--------EKMFEY 49 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEE-----------------------------------eccCCH--------HHHHHH
Confidence 5788888888889999986522 11 122244 899999
Q ss_pred HHHHHHCCCEEEEeec
Q 009902 99 VKALHGAGIEVILDVV 114 (523)
Q Consensus 99 v~~aH~~Gi~VilD~V 114 (523)
+++|+++|++||+=..
T Consensus 50 a~~a~~~g~~viIAgA 65 (162)
T COG0041 50 AEEAEERGVKVIIAGA 65 (162)
T ss_pred HHHHHHCCCeEEEecC
Confidence 9999999999998654
No 192
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=50.89 E-value=1e+02 Score=30.68 Aligned_cols=86 Identities=9% Similarity=0.033 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCC---HHHH
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---PVVM 166 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~---p~v~ 166 (523)
+.+..|++|++++|+.|-++++-+ +|.+... ..- .. .+.|...........|. ..+. .++.
T Consensus 78 ~~i~~~r~l~d~vh~~G~~i~~QL--~H~G~~~---~~~--~~--------~~~ps~~~~~~~~~~p~-~mt~eeI~~ii 141 (337)
T PRK13523 78 EHIEGLHKLVTFIHDHGAKAAIQL--AHAGRKA---ELE--GD--------IVAPSAIPFDEKSKTPV-EMTKEQIKETV 141 (337)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEc--cCCCCCC---CCC--CC--------ccCCCCCCCCCCCCCCC-cCCHHHHHHHH
Confidence 346889999999999999999887 6777621 100 00 00000000000000110 1122 2445
Q ss_pred HHHHHHHHHHHHhccccEEEEccccc
Q 009902 167 ELILDSLRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 167 ~~i~~~~~~w~~~~gvDGfR~D~~~~ 192 (523)
+.+..+++.-. +.|+||+-+-+++.
T Consensus 142 ~~f~~aA~~a~-~aGfDgVeih~ahG 166 (337)
T PRK13523 142 LAFKQAAVRAK-EAGFDVIEIHGAHG 166 (337)
T ss_pred HHHHHHHHHHH-HcCCCEEEEccccc
Confidence 55555666666 78999999998853
No 193
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=49.97 E-value=86 Score=31.91 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccc-cC
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHT-NE 120 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~-~~ 120 (523)
.++.|++|++++|+.|-++++-+ +|. +.
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL--~H~~Gr 109 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQL--TAGFGR 109 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEc--cCcCCC
Confidence 35789999999999999999777 575 54
No 194
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=49.80 E-value=40 Score=31.18 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q 009902 92 SWEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~Vil 111 (523)
.++++++.+.+.++|+.|++
T Consensus 192 ~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 192 SADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCeEEe
Confidence 48899999999999999975
No 195
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=49.46 E-value=15 Score=35.70 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEeec
Q 009902 92 SWEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
.++++++.+-||++||+|.||..
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEET
T ss_pred HHHHHHHHHHHHhCceEEEEehh
Confidence 39999999999999999999985
No 196
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=49.42 E-value=96 Score=30.38 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=61.8
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 100 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~ 100 (523)
.+..+.+.+..+.++|+.+|-|-|+.....+.. .++..|++-+ =+++.|+
T Consensus 55 sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~----------~gs~a~~~~g--------------------~v~~air 104 (324)
T PF00490_consen 55 SIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDE----------EGSEAYNPDG--------------------LVQRAIR 104 (324)
T ss_dssp EHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BS----------S-GGGGSTTS--------------------HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCc----------chhcccCCCC--------------------hHHHHHH
Confidence 578889999999999999999999965421110 1122222221 1333334
Q ss_pred HHHH--CCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHH
Q 009902 101 ALHG--AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 178 (523)
Q Consensus 101 ~aH~--~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~ 178 (523)
++++ -.|-||-|+.+..-... .|...-. + .+=.-.|.+..+.+.+...-..
T Consensus 105 ~iK~~~pdl~vi~Dvclc~YT~h--GHcGil~------------~------------~~g~idND~Tl~~Lak~Al~~A- 157 (324)
T PF00490_consen 105 AIKKAFPDLLVITDVCLCEYTSH--GHCGILD------------D------------EDGEIDNDETLERLAKQALSHA- 157 (324)
T ss_dssp HHHHHSTTSEEEEEE-STTTBTS--SSSSEB-------------C------------TTSSBEHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCcEEEEecccccccCC--CceEEEE------------C------------CCCeEecHHHHHHHHHHHHHHH-
Confidence 3333 47999999998765542 1211100 0 0112345788888888888888
Q ss_pred hccccEEE
Q 009902 179 EYHVDGFR 186 (523)
Q Consensus 179 ~~gvDGfR 186 (523)
+-|+|-.-
T Consensus 158 ~AGADiVA 165 (324)
T PF00490_consen 158 EAGADIVA 165 (324)
T ss_dssp HHT-SEEE
T ss_pred HhCCCeec
Confidence 68998654
No 197
>PLN02814 beta-glucosidase
Probab=49.27 E-value=71 Score=33.86 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=45.4
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
.-+--..+-++-+|+||+++--++=-+.- |-|. |+ +.-.++.++=.++||
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsR----------------------------I~P~-G~-g~~N~~Gl~fY~~lI 123 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSR----------------------------LIPN-GR-GLINPKGLLFYKNLI 123 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhh----------------------------cCcC-CC-CCCCHHHHHHHHHHH
Confidence 34666777899999999999776643322 1111 11 001234457789999
Q ss_pred HHHHHCCCEEEEeecccccc
Q 009902 100 KALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~ 119 (523)
++|.++||+.|+-+ .|-.
T Consensus 124 d~l~~~GI~P~VTL--~H~d 141 (504)
T PLN02814 124 KELRSHGIEPHVTL--YHYD 141 (504)
T ss_pred HHHHHcCCceEEEe--cCCC
Confidence 99999999999876 3554
No 198
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=48.76 E-value=2.7e+02 Score=27.32 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=64.6
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 100 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~ 100 (523)
.+..+.+.+..+.++|+++|-|-|+-+. +. + .++..|++-.. +.+-|+
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv~~~-----Kd---~----~gs~A~~~~g~--------------------v~rair 104 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGVPEL-----KD---E----DGSEAYNPDGL--------------------VQRAIR 104 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCcCCC-----CC---c----ccccccCCCCH--------------------HHHHHH
Confidence 5788899999999999999999999222 00 0 11112222211 333333
Q ss_pred HHHH--CCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHH
Q 009902 101 ALHG--AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 178 (523)
Q Consensus 101 ~aH~--~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~ 178 (523)
++++ -.|-||-|+.+..-...+ |... ..+ + .-.|.+..+.+.+......
T Consensus 105 ~iK~~~p~l~vi~DVcLc~YT~hG--HcGi-------------------l~~--g-----~idND~Tl~~L~~~Al~~A- 155 (323)
T PRK09283 105 AIKKAFPELGVITDVCLDEYTSHG--HCGI-------------------LED--G-----YVDNDETLELLAKQALSQA- 155 (323)
T ss_pred HHHHhCCCcEEEEeeeccCCCCCC--ceec-------------------ccC--C-----cCcCHHHHHHHHHHHHHHH-
Confidence 3333 489999999987665421 1111 000 0 1236888889999888888
Q ss_pred hccccEE
Q 009902 179 EYHVDGF 185 (523)
Q Consensus 179 ~~gvDGf 185 (523)
+-|+|-.
T Consensus 156 ~AGaDiV 162 (323)
T PRK09283 156 EAGADIV 162 (323)
T ss_pred HhCCCEE
Confidence 6899854
No 199
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=48.09 E-value=18 Score=33.63 Aligned_cols=84 Identities=10% Similarity=0.076 Sum_probs=50.2
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
.+...+.+.+..|+++||. |+|-=+-.. . ........-..||-++|+.+-...........-++.++
T Consensus 130 ~~~~~~~~~i~~l~~~G~~-ialddfg~~-~-----------~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~ 196 (241)
T smart00052 130 DDDESAVATLQRLRELGVR-IALDDFGTG-Y-----------SSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSII 196 (241)
T ss_pred cChHHHHHHHHHHHHCCCE-EEEeCCCCc-H-----------HHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHH
Confidence 3445555778999999996 454331110 0 00011112246777788776543211112235589999
Q ss_pred HHHHHCCCEEEEeeccc
Q 009902 100 KALHGAGIEVILDVVYN 116 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~n 116 (523)
+.||..|++||++.|=+
T Consensus 197 ~~~~~~~~~via~gVe~ 213 (241)
T smart00052 197 ELAQKLGLQVVAEGVET 213 (241)
T ss_pred HHHHHCCCeEEEecCCC
Confidence 99999999999998843
No 200
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=48.02 E-value=1.8e+02 Score=27.22 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeC-CCCCc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD-GTGQL 148 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (523)
.|-..+.+...+.|..|.+|+ |-.. +|+|...+.+.++..|-.|. |+|-+
T Consensus 120 ~Es~~~~~~~~~~~~~~hiDl---Heyp---~~E~~~~la~~~~~~~~~~~iP~Gf~ 170 (240)
T cd06232 120 GEREARHQALAKSGAQLHVNL---HGYP---AHEWTRPLSGYVPRGFESWTLPKGFF 170 (240)
T ss_pred hHHHHHHHHHHhhCCcEEEEC---CCCC---cccccccccccCCCCCcCCccCCceE
Confidence 344444444445588898887 7777 78898888777766665553 44433
No 201
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=47.97 E-value=2.8e+02 Score=27.19 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=65.8
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
=.+..+.+.+..+.++|+++|-|-|+.+. +. . .++..|++- -=+++-|
T Consensus 58 ~sid~l~~~~~~~~~~Gi~~v~lFgv~~~-----Kd---~----~gs~A~~~~--------------------g~v~~ai 105 (322)
T PRK13384 58 LPESALADEIERLYALGIRYVMPFGISHH-----KD---A----KGSDTWDDN--------------------GLLARMV 105 (322)
T ss_pred ECHHHHHHHHHHHHHcCCCEEEEeCCCCC-----CC---C----CcccccCCC--------------------ChHHHHH
Confidence 35778888999999999999999999432 00 0 111122221 1134444
Q ss_pred HHHHHC--CCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHH
Q 009902 100 KALHGA--GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWV 177 (523)
Q Consensus 100 ~~aH~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~ 177 (523)
+++++. .|-||-|+.+..-...+ |... . .+=.-.|.+..+.+.+......
T Consensus 106 r~iK~~~pdl~vi~DVcLc~YT~hG--HcGi-------------------l-------~~g~i~ND~Tl~~L~~~Als~A 157 (322)
T PRK13384 106 RTIKAAVPEMMVIPDICFCEYTDHG--HCGV-------------------L-------HNDEVDNDATVENLVKQSVTAA 157 (322)
T ss_pred HHHHHHCCCeEEEeeeecccCCCCC--ceee-------------------c-------cCCcCccHHHHHHHHHHHHHHH
Confidence 444444 89999999987655421 1111 0 0001356888889999988888
Q ss_pred HhccccEE
Q 009902 178 VEYHVDGF 185 (523)
Q Consensus 178 ~~~gvDGf 185 (523)
+-|+|-.
T Consensus 158 -~AGADiV 164 (322)
T PRK13384 158 -KAGADML 164 (322)
T ss_pred -HcCCCeE
Confidence 7899854
No 202
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=47.61 E-value=22 Score=29.23 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEe
Q 009902 92 SWEFKEMVKALHGAGIEVILD 112 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD 112 (523)
+.|++.+-+...++||+|++|
T Consensus 21 ~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 21 VKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEEC
Confidence 599999999999999999998
No 203
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.45 E-value=12 Score=32.84 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
+++++||+.||++|+++-|-.
T Consensus 167 e~l~eFvd~Ah~hGL~~AlAG 187 (235)
T COG1891 167 EELEEFVDLAHEHGLEVALAG 187 (235)
T ss_pred HHHHHHHHHHHHcchHHHhcc
Confidence 999999999999999887644
No 204
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=46.96 E-value=16 Score=34.30 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeecccccc
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~ 119 (523)
...+++++++++||+.||+||+...+..-.
T Consensus 109 ~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~ 138 (236)
T PF01791_consen 109 EVIEEIAAVVEECHKYGLKVILEPYLRGEE 138 (236)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEEECECHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCchh
Confidence 346899999999999999999997664433
No 205
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=46.74 E-value=59 Score=34.00 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHCCCE-EEEeecccccc
Q 009902 93 WEFKEMVKALHGAGIE-VILDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~-VilD~V~nH~~ 119 (523)
++..+.++.+++.|++ |-+|+.++..+
T Consensus 187 ~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (455)
T TIGR00538 187 EMIFELMNHAREAGFTSINIDLIYGLPK 214 (455)
T ss_pred HHHHHHHHHHHhcCCCcEEEeEEeeCCC
Confidence 8889999999999996 77999876544
No 206
>PRK10060 RNase II stability modulator; Provisional
Probab=46.57 E-value=29 Score=38.32 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=51.1
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
.+...+.+.|..|+++||..-. - .. |+......+-..-+.|+-+||..|=..-........-++.++
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-D---df---------Gtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii 604 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-D---DF---------GTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIV 604 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-E---CC---------CCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHH
Confidence 5667777888899999985432 1 11 110000011112257888888777433211122236689999
Q ss_pred HHHHHCCCEEEEeecc
Q 009902 100 KALHGAGIEVILDVVY 115 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~ 115 (523)
..||..||+||.+.|=
T Consensus 605 ~~a~~lg~~viAeGVE 620 (663)
T PRK10060 605 AVAQALNLQVIAEGVE 620 (663)
T ss_pred HHHHHCCCcEEEecCC
Confidence 9999999999999984
No 207
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=46.55 E-value=1.5e+02 Score=29.98 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+-++.|+++++++|++|-++++-+ +|.+.
T Consensus 76 ~~i~~~~~lad~vH~~Ga~i~~QL--~H~Gr 104 (362)
T PRK10605 76 EQIAAWKKITAGVHAEGGHIAVQL--WHTGR 104 (362)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEec--cCCCC
Confidence 346889999999999999999966 68877
No 208
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=45.96 E-value=61 Score=32.88 Aligned_cols=27 Identities=19% Similarity=0.403 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHCCCE-EEEeecccccc
Q 009902 93 WEFKEMVKALHGAGIE-VILDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~-VilD~V~nH~~ 119 (523)
++..+.++.+++.|+. |-+|+.++.-+
T Consensus 136 ~~~~~~i~~l~~~g~~~v~~dli~GlPg 163 (377)
T PRK08599 136 EDVYEAIANAKKAGFDNISIDLIYALPG 163 (377)
T ss_pred HHHHHHHHHHHHcCCCcEEEeeecCCCC
Confidence 8899999999999998 67898875444
No 209
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=45.82 E-value=81 Score=25.33 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCcEEEEEEecCC-CCeEEEEEeCCC-CcEEEEcCCCCCCCCeEEEE--eCCCCC---CCCCCCC---CCCCCCCeEEEc
Q 009902 444 DSKFLAFTLHDNN-GADIYLAFNAHD-FFVKVSLPPPPPKRQWFRVV--DTNLES---PDDIVPE---GAAGTGSTYNLS 513 (523)
Q Consensus 444 ~~~v~af~R~~~~-~~~~lvv~N~s~-~~~~~~l~~~~~~~~~~~~~--~~~~~~---~~~~~~~---~~~~~~~~i~l~ 513 (523)
-...+++.|...+ +.-++..+|..+ ...+++|+-...+..|...+ +..... ...+..+ .......+|.|.
T Consensus 13 pGeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~~~l~i~l~ 92 (103)
T PF14509_consen 13 PGEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDGPDADYTNPEAYKIETRKVTSGDKLTITLA 92 (103)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT-EEEEEE-
T ss_pred CceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCCcccccCCcceEEEEEEECCCCEEEEEEe
Confidence 5677888887732 667777788763 44556666554343455333 443211 1111111 111233578899
Q ss_pred CCEEEEEEe
Q 009902 514 PYSSILLEA 522 (523)
Q Consensus 514 p~~~~vl~~ 522 (523)
|.+..|++.
T Consensus 93 ~~GG~vi~~ 101 (103)
T PF14509_consen 93 PGGGFVIRI 101 (103)
T ss_dssp TT-EEEEEE
T ss_pred CCCcEEEEE
Confidence 988877653
No 210
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=45.54 E-value=2.1e+02 Score=31.46 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=71.7
Q ss_pred cchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHH-HHHHHHHHHHC-
Q 009902 28 KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWE-FKEMVKALHGA- 105 (523)
Q Consensus 28 ~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~d-l~~Lv~~aH~~- 105 (523)
.|++|++||+|+|+|-.+.....+ | ..+-=|-|..+.=+ .+| |-+..=+++.|
T Consensus 339 l~~ri~~~~~~~VyLqafadp~gd------g-----~~~~lYFpnr~lPm--------------raDlfnrvawql~tR~ 393 (672)
T PRK14581 339 LVQRISDLRVTHVFLQAFSDPKGD------G-----NIRQVYFPNRWIPM--------------RQDLFNRVVWQLASRP 393 (672)
T ss_pred HHHHHHhcCCCEEEEEeeeCCCCC------C-----ceeeEEecCCcccH--------------HHhhhhHHHHHHHhhh
Confidence 368899999999999988664110 0 11112444433222 255 44444667766
Q ss_pred CCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCcccc-CCcCCcCCCCCHHHHHHHHHHHHHHHHhccccE
Q 009902 106 GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY-AGCGNTLNCNHPVVMELILDSLRHWVVEYHVDG 184 (523)
Q Consensus 106 Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDG 184 (523)
|++|..=+..--..-. ...|....+ ++++....- ..+...|.--+|++|+.|.++..-....-.|||
T Consensus 394 ~v~vyAWmpvl~~~l~-~~~~~~~~~-----------~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~G 461 (672)
T PRK14581 394 DVEVYAWMPVLAFDMD-PSLPRITRI-----------DPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDG 461 (672)
T ss_pred CceEEEeeehhhccCC-cccchhhhc-----------ccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 9999988765322110 011111111 111100000 001345677789999999999999995459999
Q ss_pred EEEcc
Q 009902 185 FRFDL 189 (523)
Q Consensus 185 fR~D~ 189 (523)
+-|.-
T Consensus 462 ilfhD 466 (672)
T PRK14581 462 IIYHD 466 (672)
T ss_pred EEecc
Confidence 99873
No 211
>PRK09989 hypothetical protein; Provisional
Probab=45.31 E-value=45 Score=31.68 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=42.9
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCC----CCC-CCCC--CCCCCCCchHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF----SPM-SRYA--AGGGGPLKASWEFK 96 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~----~vd-~~~G--t~~~~~~~~~~dl~ 96 (523)
.+.+.|+.++++||+.|.|.-.........+.. ...+|-.+..+- .+. ..++ ..+......+++++
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~-------l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQ-------LEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADID 88 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHH-------HHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHH
Confidence 467889999999999999955433321111000 001122221110 011 1111 11112234467899
Q ss_pred HHHHHHHHCCCEEE
Q 009902 97 EMVKALHGAGIEVI 110 (523)
Q Consensus 97 ~Lv~~aH~~Gi~Vi 110 (523)
+.++.|++.|.+.|
T Consensus 89 ~~i~~A~~lg~~~v 102 (258)
T PRK09989 89 LALEYALALNCEQV 102 (258)
T ss_pred HHHHHHHHhCcCEE
Confidence 99999999999877
No 212
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=45.23 E-value=32 Score=32.80 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=50.0
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
.+...+...+..|+++||.. .|= .. |.......+.---+.|+-+||..|-..-........=++.+|
T Consensus 133 ~~~~~~~~~l~~L~~~G~~i-alD---DF---------GtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv 199 (256)
T COG2200 133 DDLDTALALLRQLRELGVRI-ALD---DF---------GTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIV 199 (256)
T ss_pred cCHHHHHHHHHHHHHCCCeE-EEE---CC---------CCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHH
Confidence 56666777899999999743 221 11 110000001111345667788887543221112224599999
Q ss_pred HHHHHCCCEEEEeec
Q 009902 100 KALHGAGIEVILDVV 114 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V 114 (523)
+.||+.||+||...|
T Consensus 200 ~la~~l~~~vvaEGV 214 (256)
T COG2200 200 ALAHKLGLTVVAEGV 214 (256)
T ss_pred HHHHHCCCEEEEeec
Confidence 999999999999998
No 213
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=44.96 E-value=18 Score=36.60 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=26.5
Q ss_pred CCCCCchHHHHHHHHHHHHHCCCEEEEeecc
Q 009902 85 GGGPLKASWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 85 ~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
|..|...+-|++++++-||++|+-||+|=.+
T Consensus 171 PsNPll~v~DI~~l~~la~~~g~~vvVDnTf 201 (409)
T KOG0053|consen 171 PSNPLLKVPDIEKLARLAHKYGFLVVVDNTF 201 (409)
T ss_pred CCCCccccccHHHHHHHHhhCCCEEEEeCCc
Confidence 5566777799999999999999999999654
No 214
>PLN02998 beta-glucosidase
Probab=44.94 E-value=76 Score=33.57 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=45.1
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
..+.-..+-++.+|+||+++--++=-+.- |-|. |+. .-.++.++=.++||
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsR----------------------------I~P~-G~g-~vN~~gl~~Y~~li 128 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSR----------------------------LLPS-GRG-PINPKGLQYYNNLI 128 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHh----------------------------cCcC-CCC-CcCHHHHHHHHHHH
Confidence 34666777899999999999776532221 1111 110 01234467789999
Q ss_pred HHHHHCCCEEEEeecccccc
Q 009902 100 KALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~ 119 (523)
+++.++||+.|+-+ .|..
T Consensus 129 d~L~~~GIeP~VTL--~H~d 146 (497)
T PLN02998 129 DELITHGIQPHVTL--HHFD 146 (497)
T ss_pred HHHHHcCCceEEEe--cCCC
Confidence 99999999999876 3554
No 215
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=44.88 E-value=39 Score=34.24 Aligned_cols=65 Identities=15% Similarity=0.338 Sum_probs=44.9
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECC---CcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLP---VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~P---i~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
++++++...|..||.+||+.|-+-= |.|. .+|. -| | . .-.+
T Consensus 13 ~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~--------~~p~-------~y---d----------W--------s~Y~ 56 (402)
T PF01373_consen 13 NDWNALEAQLRALKSAGVDGVMVDVWWGIVEG--------EGPQ-------QY---D----------W--------SGYR 56 (402)
T ss_dssp SECHHHHHHHHHHHHTTEEEEEEEEEHHHHTG--------SSTT-------B------------------------HHHH
T ss_pred CcHHHHHHHHHHHHHcCCcEEEEEeEeeeecc--------CCCC-------cc---C----------c--------HHHH
Confidence 8899999999999999999987532 1111 1110 11 1 2 7789
Q ss_pred HHHHHHHHCCCEEEEeeccccccC
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+|.+.+++.|+||..=+-+.-++.
T Consensus 57 ~l~~~vr~~GLk~~~vmsfH~cGg 80 (402)
T PF01373_consen 57 ELFEMVRDAGLKLQVVMSFHQCGG 80 (402)
T ss_dssp HHHHHHHHTT-EEEEEEE-S-BSS
T ss_pred HHHHHHHHcCCeEEEEEeeecCCC
Confidence 999999999999998888866654
No 216
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.47 E-value=1.2e+02 Score=30.58 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
-++.|++|++++|+.|=++++-+ +|.+.
T Consensus 76 ~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr 103 (361)
T cd04747 76 ALAGWKKVVDEVHAAGGKIAPQL--WHVGA 103 (361)
T ss_pred HHHHHHHHHHHHHhcCCEEEEec--cCCCC
Confidence 46889999999999999999887 67776
No 217
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.85 E-value=1.7e+02 Score=29.38 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCc-cccCCcCC-cCCC-CCHHHHHH
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL-LNYAGCGN-TLNC-NHPVVMEL 168 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-dln~-~~p~v~~~ 168 (523)
++.+++|++++|++|-++++-+ +|.+..... .+. .. . ..+.+.... .......| .+.. +-.++.+.
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~-~~~----~~---~-~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~ 145 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQI--FHAGRMANP-ALV----PG---G-DVVSPSAIAAFRPGAHTPRELTHEEIEDIIDA 145 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEe--cCCCCCCCc-ccc----CC---C-ceecCCCCcccCCCCCCCccCCHHHHHHHHHH
Confidence 5889999999999999998655 787763210 000 00 0 000000000 00000001 1110 01345566
Q ss_pred HHHHHHHHHHhccccEEEEccccc
Q 009902 169 ILDSLRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 169 i~~~~~~w~~~~gvDGfR~D~~~~ 192 (523)
+.++++.-. +.|+||+-+-+++.
T Consensus 146 f~~aA~~a~-~aGfDgVeih~ahG 168 (353)
T cd04735 146 FGEATRRAI-EAGFDGVEIHGANG 168 (353)
T ss_pred HHHHHHHHH-HcCCCEEEEccccc
Confidence 666677766 78999999998763
No 218
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=43.76 E-value=44 Score=31.95 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
+++++|++.||+.||.+|+|+
T Consensus 147 ~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 789999999999999999998
No 219
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=43.72 E-value=84 Score=30.78 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
+++.+.++.+++.||+|..++.++
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEEEC
Confidence 889999999999999999999875
No 220
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=43.21 E-value=28 Score=35.73 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=42.0
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|..+++.||+.|.|.. ++ .+..-...+.... +. ++..+.++.+++.|
T Consensus 116 e~l~~l~~~GvnrislGv--QS--------------------~~d~~L~~l~R~~-~~--------~~~~~ai~~l~~~G 164 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGV--QA--------------------FQDELLALCGRSH-RV--------KDIFAAVDLIHQAG 164 (400)
T ss_pred HHHHHHHHCCCCEEEEEc--cc--------------------CCHHHHHHhCCCC-CH--------HHHHHHHHHHHHcC
Confidence 467778888888888764 22 1111122333322 33 88999999999999
Q ss_pred CE-EEEeeccccccC
Q 009902 107 IE-VILDVVYNHTNE 120 (523)
Q Consensus 107 i~-VilD~V~nH~~~ 120 (523)
+. |-+|+.++.-+.
T Consensus 165 ~~~v~~dlI~GlPgq 179 (400)
T PRK07379 165 IENFSLDLISGLPHQ 179 (400)
T ss_pred CCeEEEEeecCCCCC
Confidence 98 889999875553
No 221
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=42.83 E-value=21 Score=36.33 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=26.7
Q ss_pred CCCCCchHHHHHHHHHHHHHCCCEEEEeecc
Q 009902 85 GGGPLKASWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 85 ~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
|.+|.-++-|++++++.||+.|+.||+|=.+
T Consensus 158 PsNP~l~v~DI~~i~~~A~~~g~~vvVDNTf 188 (396)
T COG0626 158 PSNPLLEVPDIPAIARLAKAYGALVVVDNTF 188 (396)
T ss_pred CCCcccccccHHHHHHHHHhcCCEEEEECCc
Confidence 5667777899999999999999999999554
No 222
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=42.70 E-value=30 Score=34.82 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHCCCE-EEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIE-VILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~-VilD~V~nH~~~ 120 (523)
++..+.++.+++.|+. |-+|+.++.-+.
T Consensus 139 ~~~~~ai~~lr~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 139 QDSKEAINLLHKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeecCCCC
Confidence 8999999999999997 899999876543
No 223
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=42.64 E-value=1.1e+02 Score=21.00 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEE
Q 009902 444 DSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 521 (523)
Q Consensus 444 ~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~ 521 (523)
+.+++-|+-... ++.++++.|.+.++..+.= ..+.+..+. ....+.|.|.++++..
T Consensus 8 ~~dlv~ysyek~-g~k~viaanvgke~ke~sg---------grvw~g~w~------------~~e~vilkp~efalv~ 63 (64)
T PF09083_consen 8 NKDLVMYSYEKN-GQKIVIAANVGKEPKEISG---------GRVWNGRWS------------DKERVILKPFEFALVV 63 (64)
T ss_dssp BTTEEEEEEEET-TEEEEEEEE-SSS-EEEEE---------EEEESSSEE------------EEEEEEE-TT-EEEEE
T ss_pred ccceEEEEeecC-CcEEEEEeccCCCcccccC---------ceeecCccc------------ccceEEecceeEEEEe
Confidence 445555554333 7899999999999877752 234444322 1257888998887643
No 224
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.55 E-value=51 Score=32.59 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCC---HHHH
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---PVVM 166 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~---p~v~ 166 (523)
+-++.++++++++|+.|-++++-+ +|.+.... .++. .... ..+...........|. ..+. .++.
T Consensus 74 ~~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~-~~~~-~~~~--------~~~s~~~~~~~~~~~~-~mt~~ei~~~i 140 (327)
T cd02803 74 EQIPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQ-PNLT-GGPP--------PAPSAIPSPGGGEPPR-EMTKEEIEQII 140 (327)
T ss_pred HHHHHHHHHHHHHHhCCCHhhHHh--hCCCcCCC-CcCC-CCCc--------cCCCCCCCCCCCCCCC-cCCHHHHHHHH
Confidence 346889999999999999987665 78776321 0000 0000 0000000000000110 1111 3456
Q ss_pred HHHHHHHHHHHHhccccEEEEcccc
Q 009902 167 ELILDSLRHWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 167 ~~i~~~~~~w~~~~gvDGfR~D~~~ 191 (523)
+.+.++++... +.|+||+-+.+++
T Consensus 141 ~~~~~aA~~a~-~aGfDgveih~~~ 164 (327)
T cd02803 141 EDFAAAARRAK-EAGFDGVEIHGAH 164 (327)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcchh
Confidence 66666777777 7899999999774
No 225
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=42.19 E-value=56 Score=33.18 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+.+++|++.|+++|+-||+|-|....+.
T Consensus 196 ~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 223 (389)
T PRK01278 196 EFLKGLRQLCDENGLLLIFDEVQCGMGR 223 (389)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 8899999999999999999999765543
No 226
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.72 E-value=1.1e+02 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhccccEEEE-ccccccc
Q 009902 167 ELILDSLRHWVVEYHVDGFRF-DLASVLC 194 (523)
Q Consensus 167 ~~i~~~~~~w~~~~gvDGfR~-D~~~~~~ 194 (523)
+++.+.++... ++|+|.+++ |+++.+.
T Consensus 144 e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~ 171 (337)
T PRK08195 144 EKLAEQAKLME-SYGAQCVYVVDSAGALL 171 (337)
T ss_pred HHHHHHHHHHH-hCCCCEEEeCCCCCCCC
Confidence 56777777776 799999996 5777663
No 227
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=41.65 E-value=33 Score=33.93 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEc
Q 009902 161 NHPVVMELILDSLRHWVVEYHVDGFRFD 188 (523)
Q Consensus 161 ~~p~v~~~i~~~~~~w~~~~gvDGfR~D 188 (523)
.+++.|+.+++.+..|++++|+||+-||
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiD 132 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDID 132 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEC
Confidence 5688999999999999999999999999
No 228
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=41.43 E-value=1.6e+02 Score=29.66 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEeeccccccCCC-CCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCC---HHHHH
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---PVVME 167 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~---p~v~~ 167 (523)
++.|+++++++|+.|=++++-+ +|.+... ..++|.... .. +.-...... ....|. -.+. .++.+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~~~~~~~~~~~~--va-pS~~~~~~~------~~~~pr-~mt~~eI~~ii~ 149 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRKARASHPWLPSA--VA-PSAIPAPGG------RRATPR-ELTEEEIEEVIE 149 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCcccccccccCCCcc--cC-CCccccccC------CCCCCc-cCCHHHHHHHHH
Confidence 5889999999999999999987 6888521 134432000 00 000000000 000110 1112 34555
Q ss_pred HHHHHHHHHHHhccccEEEEcccccc
Q 009902 168 LILDSLRHWVVEYHVDGFRFDLASVL 193 (523)
Q Consensus 168 ~i~~~~~~w~~~~gvDGfR~D~~~~~ 193 (523)
.+.++.+.=. +-|+||.-+-+++..
T Consensus 150 ~f~~AA~rA~-~AGFDgVEIH~AhGY 174 (363)
T COG1902 150 DFARAARRAK-EAGFDGVEIHGAHGY 174 (363)
T ss_pred HHHHHHHHHH-HcCCCEEEEeeccch
Confidence 5556666666 799999999998854
No 229
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=41.13 E-value=1.7e+02 Score=29.37 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCC---HHHHH
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---PVVME 167 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~---p~v~~ 167 (523)
-++.|++|++++|+.|-++++-+ +|.+.... ++..........+. ....|. ..+. .++.+
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~~~-~~~~~~ps~~~~~~-------------~~~~p~-~mt~~eI~~i~~ 137 (353)
T cd02930 75 QAAGHRLITDAVHAEGGKIALQI--LHAGRYAY-HPLCVAPSAIRAPI-------------NPFTPR-ELSEEEIEQTIE 137 (353)
T ss_pred HHHHHHHHHHHHHHcCCEEEeec--cCCCCCCC-CCCCcCCCCCCCCC-------------CCCCCC-CCCHHHHHHHHH
Confidence 36889999999999999999887 58776321 11000000000000 000110 1222 34566
Q ss_pred HHHHHHHHHHHhccccEEEEcccc
Q 009902 168 LILDSLRHWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 168 ~i~~~~~~w~~~~gvDGfR~D~~~ 191 (523)
.+.++++.-. +.|+||+-+-+++
T Consensus 138 ~f~~aA~~a~-~aGfDgVeih~ah 160 (353)
T cd02930 138 DFARCAALAR-EAGYDGVEIMGSE 160 (353)
T ss_pred HHHHHHHHHH-HcCCCEEEEeccc
Confidence 6666777666 7899999997654
No 230
>PRK05967 cystathionine beta-lyase; Provisional
Probab=39.95 E-value=34 Score=34.94 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccc
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
.+.+++++++.||++|+-||+|-++.
T Consensus 164 ~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 164 EMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred cHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 35999999999999999999999874
No 231
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=39.90 E-value=37 Score=34.41 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=41.5
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|+.++++||+.|.|.. ++ .+..-...+.... +. ++..+-++.|++.|
T Consensus 104 ~~l~~l~~~G~nrislGv--QS--------------------~~~~~L~~l~R~~-~~--------~~~~~ai~~~~~~g 152 (370)
T PRK06294 104 SYIRALALTGINRISIGV--QT--------------------FDDPLLKLLGRTH-SS--------SKAIDAVQECSEHG 152 (370)
T ss_pred HHHHHHHHCCCCEEEEcc--cc--------------------CCHHHHHHcCCCC-CH--------HHHHHHHHHHHHcC
Confidence 467888888888887764 22 1111122232222 32 88888999999999
Q ss_pred CE-EEEeeccccccC
Q 009902 107 IE-VILDVVYNHTNE 120 (523)
Q Consensus 107 i~-VilD~V~nH~~~ 120 (523)
+. |-+|+.++.-+.
T Consensus 153 ~~~v~~Dli~GlPgq 167 (370)
T PRK06294 153 FSNLSIDLIYGLPTQ 167 (370)
T ss_pred CCeEEEEeecCCCCC
Confidence 96 889998875553
No 232
>PRK07094 biotin synthase; Provisional
Probab=39.78 E-value=33 Score=33.90 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
++..+.++.+|+.||.|..++++.+-+.
T Consensus 165 ~~~~~~i~~l~~~Gi~v~~~~iiGlpge 192 (323)
T PRK07094 165 ENRIACLKDLKELGYEVGSGFMVGLPGQ 192 (323)
T ss_pred HHHHHHHHHHHHcCCeecceEEEECCCC
Confidence 8899999999999999999999876543
No 233
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.74 E-value=1.8e+02 Score=29.08 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCC---HHHHH
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---PVVME 167 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~---p~v~~ 167 (523)
-++.|++|++++|+.|-++++-+ +|.+.... .- ..+. +. ..+...........|. ..+. .++.+
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~Ql--~H~G~~~~---~~--~~~~--~~---~~ps~~~~~~~~~~~~-~mt~~eI~~ii~ 141 (343)
T cd04734 75 IIPGFRRLAEAVHAHGAVIMIQL--THLGRRGD---GD--GSWL--PP---LAPSAVPEPRHRAVPK-AMEEEDIEEIIA 141 (343)
T ss_pred HHHHHHHHHHHHHhcCCeEEEec--cCCCcCcC---cc--cCCC--cc---cCCCCCCCCCCCCCCC-cCCHHHHHHHHH
Confidence 35789999999999999999865 77766221 00 0000 00 0000000000000110 1122 34555
Q ss_pred HHHHHHHHHHHhccccEEEEccccc
Q 009902 168 LILDSLRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 168 ~i~~~~~~w~~~~gvDGfR~D~~~~ 192 (523)
.+.++++.-. +.|+||+-+-+++.
T Consensus 142 ~f~~AA~ra~-~aGfDgVeih~ahG 165 (343)
T cd04734 142 AFADAARRCQ-AGGLDGVELQAAHG 165 (343)
T ss_pred HHHHHHHHHH-HcCCCEEEEccccc
Confidence 5566666655 78999999998754
No 234
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=39.70 E-value=46 Score=32.06 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=37.6
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~a 102 (523)
..+.+.|+.++++|+++|.|.+- .. .. +..+.++ +. +++++|.+.+
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~-~~----------------~~-~~~~~~~--------~~--------~~~~~~~~~l 61 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD-ET----------------DD-RLSRLDW--------SR--------EQRLALVNAI 61 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC-Cc----------------cc-hhhccCC--------CH--------HHHHHHHHHH
Confidence 35778899999999999999541 11 00 1111221 23 8899999999
Q ss_pred HHCCCEEE
Q 009902 103 HGAGIEVI 110 (523)
Q Consensus 103 H~~Gi~Vi 110 (523)
.++||+|.
T Consensus 62 ~~~gl~i~ 69 (279)
T TIGR00542 62 IETGVRIP 69 (279)
T ss_pred HHcCCCce
Confidence 99999985
No 235
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=39.47 E-value=2e+02 Score=26.64 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhccccEEEEccc
Q 009902 167 ELILDSLRHWVVEYHVDGFRFDLA 190 (523)
Q Consensus 167 ~~i~~~~~~w~~~~gvDGfR~D~~ 190 (523)
-.+++.+..++ +.||+.||+|.-
T Consensus 156 l~l~~~l~~L~-~~Gv~~~rI~~r 178 (233)
T PF01136_consen 156 LCLLDELPELK-DAGVDSFRIDGR 178 (233)
T ss_pred hhHHHHHHHHH-HcCCCEEEEcCc
Confidence 34667777888 799999999954
No 236
>PRK06256 biotin synthase; Validated
Probab=39.44 E-value=31 Score=34.36 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCEEEEeecccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
++..+-++.||+.||+|...+++.+
T Consensus 187 ~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 187 EDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHHHHcCCeeccCeEEeC
Confidence 8888999999999999999998876
No 237
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=39.38 E-value=95 Score=32.38 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHCC-CEEEEeecccccc
Q 009902 93 WEFKEMVKALHGAG-IEVILDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~G-i~VilD~V~nH~~ 119 (523)
++..+-++.+++.| +.|.+|++++.-+
T Consensus 199 ~~~~~~i~~l~~~g~~~v~~DlI~GlPg 226 (449)
T PRK09058 199 EEVLARLEELVARDRAAVVCDLIFGLPG 226 (449)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeeCCC
Confidence 88888999999999 8899999986444
No 238
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=39.29 E-value=38 Score=35.57 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCEEEEeecccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
++..+.++.||+.||.|..++++..
T Consensus 323 ~~~~~~i~~~~~~Gi~v~~~~IiGl 347 (472)
T TIGR03471 323 EIARRFTRDCHKLGIKVHGTFILGL 347 (472)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEeC
Confidence 8899999999999999999998754
No 239
>PRK12928 lipoyl synthase; Provisional
Probab=38.79 E-value=87 Score=30.50 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=47.4
Q ss_pred CccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHH
Q 009902 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 19 ~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~L 98 (523)
|=+...+.+.|+.|+++|++.|.+.+..+. .+ . .+ .| .+|=+. ++|+++
T Consensus 215 GET~ed~~etl~~Lrel~~d~v~i~~Yl~p---------~~-~------~~------~v-~~~~~~--------~~f~~~ 263 (290)
T PRK12928 215 GETEDEVIETLRDLRAVGCDRLTIGQYLRP---------SL-A------HL------PV-QRYWTP--------EEFEAL 263 (290)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEcCCCC---------Cc-c------CC------ce-eeccCH--------HHHHHH
Confidence 457888999999999999999998887663 11 0 12 22 345565 999999
Q ss_pred HHHHHHCCCEEEEee
Q 009902 99 VKALHGAGIEVILDV 113 (523)
Q Consensus 99 v~~aH~~Gi~VilD~ 113 (523)
-+.|.+.|.+-|.-.
T Consensus 264 ~~~~~~~g~~~~~~~ 278 (290)
T PRK12928 264 GQIARELGFSHVRSG 278 (290)
T ss_pred HHHHHHcCCceeEec
Confidence 999999997655543
No 240
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=38.65 E-value=42 Score=35.07 Aligned_cols=101 Identities=16% Similarity=0.215 Sum_probs=60.9
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
--+.-..+-|+.+|+||+++.-++--+.- |-|. |..+.-.++.++=.++||
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~R----------------------------i~P~-g~~g~~n~~~~~~Y~~~i 105 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSR----------------------------IFPD-GFEGKVNEEGLDFYRDLI 105 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHH----------------------------HSTT-SSSSSS-HHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhh----------------------------eeec-ccccccCHhHhhhhHHHH
Confidence 34566677799999999999887654332 1111 000011223457789999
Q ss_pred HHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHh
Q 009902 100 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 179 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~ 179 (523)
+++.++||+.|+-+ .|... | .|... .. -|.|+++.+.+.+.+++-+++
T Consensus 106 ~~l~~~gi~P~vtL--~H~~~-----P-----------~~l~~--------~g------gw~~~~~~~~F~~Ya~~~~~~ 153 (455)
T PF00232_consen 106 DELLENGIEPIVTL--YHFDL-----P-----------LWLED--------YG------GWLNRETVDWFARYAEFVFER 153 (455)
T ss_dssp HHHHHTT-EEEEEE--ESS-------B-----------HHHHH--------HT------GGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccceeeee--eeccc-----c-----------cceee--------cc------cccCHHHHHHHHHHHHHHHHH
Confidence 99999999999987 45443 2 11110 01 145688888888888888877
Q ss_pred cc
Q 009902 180 YH 181 (523)
Q Consensus 180 ~g 181 (523)
+|
T Consensus 154 ~g 155 (455)
T PF00232_consen 154 FG 155 (455)
T ss_dssp HT
T ss_pred hC
Confidence 76
No 241
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=38.42 E-value=48 Score=31.04 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=33.9
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
+|-...++.|+.+...|+++|-+.|+.. +.+..++
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~---------------------------------------------~~~~~~l 73 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVDP---------------------------------------------DSLAPFL 73 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSST---------------------------------------------TTTHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCH---------------------------------------------HHHHHHH
Confidence 5556666666777777777777666432 3467888
Q ss_pred HHHHHCCCEEEE
Q 009902 100 KALHGAGIEVIL 111 (523)
Q Consensus 100 ~~aH~~Gi~Vil 111 (523)
++|.+.||.||+
T Consensus 74 ~~~~~~gIpvv~ 85 (257)
T PF13407_consen 74 EKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHTTSEEEE
T ss_pred HHHhhcCceEEE
Confidence 999999999998
No 242
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=38.02 E-value=85 Score=34.38 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=44.1
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCEEEEEEe
Q 009902 443 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 443 ~~~~v~af~R~~~~~~~~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~ 522 (523)
...++.++.|... + ++++.|++...++++++. .+++++ +... .....+|.|+.+.|+..
T Consensus 614 ~~~g~~~~~~~~~--~-~~~~~n~~~~~~~v~~~~-----~~~~l~-~~~~------------~~g~~~l~~~~~~i~~~ 672 (673)
T COG1874 614 VPPGVSVYRRTDG--E-YIFVFNFGSEFQTVTLPA-----EYTDLI-TATN------------LLGGLTLKPYEVRILDR 672 (673)
T ss_pred CCCceEEEeccCC--c-eEEEEeccccCcceeccc-----ceeeee-eeee------------eccccccccccceeecc
Confidence 3678889988665 3 999999999999999976 235666 3221 23678999999999864
No 243
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=37.89 E-value=47 Score=30.93 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 009902 93 WEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vil 111 (523)
++|.+||+.||++|+.+=|
T Consensus 167 ~~L~~Fv~~ar~~gL~~aL 185 (235)
T PF04476_consen 167 EELAEFVAQARAHGLMCAL 185 (235)
T ss_pred HHHHHHHHHHHHccchhhc
Confidence 9999999999999987655
No 244
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=37.86 E-value=34 Score=34.21 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccCC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNEA 121 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~ 121 (523)
+-|+++.+.||+.||-||.|-|+.|+.-+
T Consensus 219 ~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 219 DHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred HHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 77999999999999999999999999874
No 245
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=37.82 E-value=72 Score=28.26 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=35.8
Q ss_pred hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEE
Q 009902 30 PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEV 109 (523)
Q Consensus 30 dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~V 109 (523)
..+..+|.++..+...... .-...|..-+=+.-|.. .++.++++.||++|++|
T Consensus 50 ~~l~~~g~~~~~~~~~~~~-------------------~~~~~Dv~I~iS~sG~t--------~~~i~~~~~ak~~g~~i 102 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTTP-------------------SIKKGDLLIAISGSGET--------ESLVTVAKKAKEIGATV 102 (179)
T ss_pred HHHHhCCCeEEEeCCcccC-------------------CCCCCCEEEEEeCCCCc--------HHHHHHHHHHHHCCCeE
Confidence 4567789888887553211 11122222233445666 99999999999999999
Q ss_pred EE
Q 009902 110 IL 111 (523)
Q Consensus 110 il 111 (523)
|.
T Consensus 103 i~ 104 (179)
T TIGR03127 103 AA 104 (179)
T ss_pred EE
Confidence 75
No 246
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=37.61 E-value=2.3e+02 Score=28.29 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
-+..|++|++++|+.|-++++-+ +|.+.
T Consensus 75 ~i~~lr~la~~vh~~ga~~~~QL--~H~G~ 102 (338)
T cd02933 75 QVEGWKKVTDAVHAKGGKIFLQL--WHVGR 102 (338)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEc--ccCcc
Confidence 35889999999999999999876 68776
No 247
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=37.52 E-value=39 Score=33.37 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEcc
Q 009902 161 NHPVVMELILDSLRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 161 ~~p~v~~~i~~~~~~w~~~~gvDGfR~D~ 189 (523)
.+|+.|+.+++.+..+++++|+||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 56889999999999999999999999994
No 248
>PRK02227 hypothetical protein; Provisional
Probab=37.36 E-value=49 Score=30.93 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 009902 93 WEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vil 111 (523)
++|++||++||++||.+-|
T Consensus 167 ~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 167 EELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHHHHHHHcccHhHh
Confidence 9999999999999987644
No 249
>PRK09028 cystathionine beta-lyase; Provisional
Probab=37.19 E-value=41 Score=34.38 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccc
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
-.+.+++++++.||++|+.||+|-++.
T Consensus 160 g~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 160 MEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 335999999999999999999998863
No 250
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=37.18 E-value=37 Score=32.15 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
+++++|++.||+.||.|++++
T Consensus 143 ~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEE
Confidence 679999999999999999998
No 251
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=37.06 E-value=39 Score=33.06 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEcc
Q 009902 160 CNHPVVMELILDSLRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 160 ~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~ 189 (523)
..+|+.|+.+++.+..+++++|+||+-||-
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~ 112 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDF 112 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEec
Confidence 467889999999999999999999999995
No 252
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=36.47 E-value=1.5e+02 Score=29.54 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhccccEEEE-ccccccc
Q 009902 167 ELILDSLRHWVVEYHVDGFRF-DLASVLC 194 (523)
Q Consensus 167 ~~i~~~~~~w~~~~gvDGfR~-D~~~~~~ 194 (523)
+++.+.++... ++|+|.+++ |+++.+.
T Consensus 143 e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~ 170 (333)
T TIGR03217 143 EKLAEQAKLME-SYGADCVYIVDSAGAML 170 (333)
T ss_pred HHHHHHHHHHH-hcCCCEEEEccCCCCCC
Confidence 56777777766 899999988 5766663
No 253
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=36.24 E-value=39 Score=28.74 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=27.0
Q ss_pred CCeeeeecccccccccCCCCCCCCCCCCCCccccCccccccchHHHHHHHHHHHHhcCcCcCc
Q 009902 362 QGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGR 424 (523)
Q Consensus 362 pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~~~~~~~~L~~lRk~~paL~~ 424 (523)
||||+|.-|+.+... ...+.++++.|-+.-++.|.+..
T Consensus 87 PGIPll~pGE~it~~-------------------------~~~~i~yl~~l~~~~~~fpGf~~ 124 (136)
T PF03711_consen 87 PGIPLLVPGERITEE-------------------------TEEIIDYLLALQEFGAHFPGFEP 124 (136)
T ss_dssp TTS-SB-TTEEB-ST-------------------------THHHHHHHHHHHHHHTCSTTS--
T ss_pred CCCcEECCccccccc-------------------------hHHHHHHHHHHHHhCCcCcCCCC
Confidence 599999999997642 24789999999999888887654
No 254
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=36.23 E-value=1.9e+02 Score=26.46 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=36.7
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
..+.-+.+.+..++++|++.+-+-.+-+. | .|| .+-+++|+
T Consensus 69 ~E~~~M~~dI~~~~~~GadG~VfG~L~~d-------------------g-------~iD-------------~~~~~~Li 109 (201)
T PF03932_consen 69 EEIEIMKEDIRMLRELGADGFVFGALTED-------------------G-------EID-------------EEALEELI 109 (201)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEE--BETT-------------------S-------SB--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEEeECCC-------------------C-------CcC-------------HHHHHHHH
Confidence 56788888899999999999998876654 1 233 27799999
Q ss_pred HHHHHCCCEEEE
Q 009902 100 KALHGAGIEVIL 111 (523)
Q Consensus 100 ~~aH~~Gi~Vil 111 (523)
+.|+ |+.+.+
T Consensus 110 ~~a~--~~~~tF 119 (201)
T PF03932_consen 110 EAAG--GMPVTF 119 (201)
T ss_dssp HHHT--TSEEEE
T ss_pred HhcC--CCeEEE
Confidence 9986 777766
No 255
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=36.00 E-value=1e+02 Score=30.18 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=46.0
Q ss_pred CccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHH
Q 009902 19 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 19 ~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~L 98 (523)
|=+-..+.+-|+.|+++|++.|-+.+-++. .+ ..+.+. +|=+. ++|+.+
T Consensus 218 GETeee~~etl~~Lrelg~d~v~igqYl~p---------~~-------~~~~v~-------~~~~p--------~~f~~~ 266 (302)
T TIGR00510 218 GETNEEIKQTLKDLRDHGVTMVTLGQYLRP---------SR-------RHLPVK-------RYVSP--------EEFDYY 266 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeecccCC---------CC-------CCCccc-------cCCCH--------HHHHHH
Confidence 456788899999999999999988887764 11 123333 34444 999999
Q ss_pred HHHHHHCCCEEEE
Q 009902 99 VKALHGAGIEVIL 111 (523)
Q Consensus 99 v~~aH~~Gi~Vil 111 (523)
-+.|-+.|.+-|.
T Consensus 267 ~~~a~~~gf~~v~ 279 (302)
T TIGR00510 267 RSVALEMGFLHAA 279 (302)
T ss_pred HHHHHHcCChheE
Confidence 9999999965444
No 256
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=35.95 E-value=1.4e+02 Score=28.41 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHH
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 169 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i 169 (523)
+.++.++++++.|+++|+.|.+-+. .. .. . -.+++
T Consensus 107 ~~~~~~~~~i~~a~~~G~~v~~~~~----~~----~~----------------------------------~---~~~~~ 141 (259)
T cd07939 107 WVLDQLRRLVGRAKDRGLFVSVGAE----DA----SR----------------------------------A---DPDFL 141 (259)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEeec----cC----CC----------------------------------C---CHHHH
Confidence 4457788999999999998764331 11 00 0 02577
Q ss_pred HHHHHHHHHhccccEEEEc-ccccc
Q 009902 170 LDSLRHWVVEYHVDGFRFD-LASVL 193 (523)
Q Consensus 170 ~~~~~~w~~~~gvDGfR~D-~~~~~ 193 (523)
.+.++... +.|+|.+++- +++.+
T Consensus 142 ~~~~~~~~-~~G~~~i~l~DT~G~~ 165 (259)
T cd07939 142 IEFAEVAQ-EAGADRLRFADTVGIL 165 (259)
T ss_pred HHHHHHHH-HCCCCEEEeCCCCCCC
Confidence 78888777 7999999985 55554
No 257
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=35.88 E-value=23 Score=20.35 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.4
Q ss_pred HHhHHhcchHHHHcCCC
Q 009902 22 YLGLIQKIPHLLELGIN 38 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~ 38 (523)
-..+..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 56778899999999985
No 258
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=35.80 E-value=1.2e+02 Score=30.40 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=43.7
Q ss_pred hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCC---CCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 30 PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF---SPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 30 dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~---~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
--|..||-+.=|-++++...... . |=-.-|.+ .=||.|++ ++|.+|++++++.|
T Consensus 27 aAL~~LG~d~r~~T~v~~~g~~~----~----------g~l~G~L~i~G~GDP~L~~---------~~L~~la~~l~~~G 83 (345)
T TIGR00666 27 AALLQLGPQFRFTTTVETKGNVE----N----------GNLKGNLVLRFGGDPTLKR---------QDIRNLVATLKKSG 83 (345)
T ss_pred HHHHhcCCCCceeeEEEecCccc----C----------CcccccEEEEeecCCCcCH---------HHHHHHHHHHHHcC
Confidence 45677898888888887752110 0 10001111 34677887 89999999999999
Q ss_pred CEEEE-eecccccc
Q 009902 107 IEVIL-DVVYNHTN 119 (523)
Q Consensus 107 i~Vil-D~V~nH~~ 119 (523)
|+-|= ||++.-..
T Consensus 84 i~~i~G~v~~D~s~ 97 (345)
T TIGR00666 84 VKQIDGNVLVDTSA 97 (345)
T ss_pred CcEEEeeEEEEccc
Confidence 98663 67775443
No 259
>PRK04302 triosephosphate isomerase; Provisional
Probab=35.62 E-value=75 Score=29.48 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
+++.++++.|++.||.+|+++
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEc
Confidence 779999999999999999744
No 260
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=35.62 E-value=1.3e+02 Score=29.22 Aligned_cols=28 Identities=36% Similarity=0.403 Sum_probs=24.4
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCccc
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
.+..+.+.+..+.+||+.+|-|-||.+.
T Consensus 59 s~d~l~~~~~~~~~lGi~av~LFgvp~~ 86 (330)
T COG0113 59 SLDRLVEEAEELVDLGIPAVILFGVPDD 86 (330)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 4777888889999999999999999854
No 261
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=35.59 E-value=40 Score=33.92 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEc
Q 009902 161 NHPVVMELILDSLRHWVVEYHVDGFRFD 188 (523)
Q Consensus 161 ~~p~v~~~i~~~~~~w~~~~gvDGfR~D 188 (523)
.++..|+.+++.+..|++++|+||+-||
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiD 119 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLD 119 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeee
Confidence 5688899999999999999999999999
No 262
>PRK11059 regulatory protein CsrD; Provisional
Probab=35.23 E-value=45 Score=36.57 Aligned_cols=84 Identities=11% Similarity=-0.037 Sum_probs=51.9
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
.++..+...+..|+++||.... - .. |.......+-..-+.||-++|+.|-..-....+...-++.++
T Consensus 530 ~~~~~~~~~l~~L~~~G~~iai-d---df---------G~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli 596 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLAV-D---QA---------GLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLV 596 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-E---CC---------CCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHH
Confidence 5678888889999999996543 1 11 110000112222356777888776533111111113489999
Q ss_pred HHHHHCCCEEEEeeccc
Q 009902 100 KALHGAGIEVILDVVYN 116 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~n 116 (523)
+.||..|++||.+.|=+
T Consensus 597 ~~a~~~~i~viAegVEt 613 (640)
T PRK11059 597 GACAGTETQVFATGVES 613 (640)
T ss_pred HHHHHCCCeEEEEEeCC
Confidence 99999999999999843
No 263
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=35.02 E-value=42 Score=30.91 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEee
Q 009902 92 SWEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
++-.++||++||..|+.-++.-
T Consensus 243 l~r~~eli~qAh~lGl~AVISS 264 (321)
T COG1441 243 LQRVRELVQQAHALGLTAVISS 264 (321)
T ss_pred HHHHHHHHHHHHhcCceeEeec
Confidence 4889999999999999887653
No 264
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=34.81 E-value=73 Score=30.34 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHhccccEE
Q 009902 162 HPVVMELILDSLRHWVVEYHVDGF 185 (523)
Q Consensus 162 ~p~v~~~i~~~~~~w~~~~gvDGf 185 (523)
-+..+++|.+-+-.|+++||=|=-
T Consensus 180 v~gaqqfIlE~vp~~i~kYGkdta 203 (275)
T PF12683_consen 180 VAGAQQFILEDVPKWIKKYGKDTA 203 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S--E
T ss_pred cHHHHHHHHHHHHHHHHHhCCcee
Confidence 367899999999999999998743
No 265
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=34.68 E-value=79 Score=29.80 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCEEEEeecccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
+++.++++.|+++||+.++=+.++-
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 8899999999999999998776543
No 266
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=34.59 E-value=1.7e+02 Score=27.99 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHH
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 170 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~ 170 (523)
.++.++++|+.|+++|++|.+-.. +.+. + -.+++.
T Consensus 112 ~~~~~~~~i~~a~~~G~~v~~~~~--~~~~----~---------------------------------------~~~~~~ 146 (268)
T cd07940 112 VLERAVEAVEYAKSHGLDVEFSAE--DATR----T---------------------------------------DLDFLI 146 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEeee--cCCC----C---------------------------------------CHHHHH
Confidence 457788999999999998773221 1110 0 025677
Q ss_pred HHHHHHHHhccccEEEEc-ccccc
Q 009902 171 DSLRHWVVEYHVDGFRFD-LASVL 193 (523)
Q Consensus 171 ~~~~~w~~~~gvDGfR~D-~~~~~ 193 (523)
+.++... ++|+|.+++- +++.+
T Consensus 147 ~~~~~~~-~~G~~~i~l~DT~G~~ 169 (268)
T cd07940 147 EVVEAAI-EAGATTINIPDTVGYL 169 (268)
T ss_pred HHHHHHH-HcCCCEEEECCCCCCC
Confidence 7788877 7999999985 55554
No 267
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=34.37 E-value=56 Score=32.77 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHCCCE-EEEeecccccc
Q 009902 93 WEFKEMVKALHGAGIE-VILDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~-VilD~V~nH~~ 119 (523)
++..+.++.+++.|+. |-+|+.++..+
T Consensus 134 ~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 134 KQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 8899999999999996 66999986544
No 268
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=34.29 E-value=4.3e+02 Score=26.86 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=45.8
Q ss_pred chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCC-CCCCCCCCCCCCCchHHHHHHHHHHHHHCCC
Q 009902 29 IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFS-PMSRYAAGGGGPLKASWEFKEMVKALHGAGI 107 (523)
Q Consensus 29 Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~-vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi 107 (523)
..-+|+.|...|. |+.++- +..--.+++|.. ..++.|.+ -+=+.+|.+++.+.||
T Consensus 60 ar~fK~aGAKyvi--lvakHH---------------DGFaLw~t~ys~wnsvk~GpK-------rDlvgela~Avr~qGL 115 (430)
T COG3669 60 ARLFKEAGAKYVI--LVAKHH---------------DGFALWPTDYSVWNSVKRGPK-------RDLVGELAKAVREQGL 115 (430)
T ss_pred HHHHHHcCCcEEE--Eeeeec---------------CCeeecccccccccccccCCc-------ccHHHHHHHHHHHcCC
Confidence 3578999999766 455541 111112334432 33567766 2668999999999999
Q ss_pred EEEEeeccccccCCCCCCCcccc
Q 009902 108 EVILDVVYNHTNEADDANPYTTS 130 (523)
Q Consensus 108 ~VilD~V~nH~~~~~~~~~~~~~ 130 (523)
+. .|.+|-+ .|+|+..
T Consensus 116 ~F---Gvy~s~a----~h~W~~~ 131 (430)
T COG3669 116 RF---GVYLSGA----WHPWDFH 131 (430)
T ss_pred ee---eEeeccC----ccccccc
Confidence 87 4567777 6899853
No 269
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=34.18 E-value=54 Score=34.77 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccccEEEEcccccccc------CC----CCCCCC--ChHHHHHHHhcccccCCeEeccc
Q 009902 170 LDSLRHWVVEYHVDGFRFDLASVLCR------GT----DGSPLN--APPLIRAIAKDAILSRCKIIAEP 226 (523)
Q Consensus 170 ~~~~~~w~~~~gvDGfR~D~~~~~~~------~~----~~~~~~--~~~~~~~~~~~~~~~~~~~i~E~ 226 (523)
++-++.-+ ..+|++|||.+-.+.. .. .|.|.. ...++..+..+...- ..+|||.
T Consensus 295 ~~rlr~~~--~~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~-~~vIaED 360 (513)
T TIGR00217 295 IKRLGANM--QYADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDN-LKIIGED 360 (513)
T ss_pred HHHHHHHH--HhCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCC-CcEEeee
Confidence 33444444 3789999997766421 11 133322 235666666643222 7889995
No 270
>PLN02803 beta-amylase
Probab=33.86 E-value=4.7e+02 Score=27.69 Aligned_cols=66 Identities=14% Similarity=0.296 Sum_probs=46.5
Q ss_pred ccH---HhHHhcchHHHHcCCCEEEECC---CcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHH
Q 009902 20 GSY---LGLIQKIPHLLELGINAVELLP---VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASW 93 (523)
Q Consensus 20 Gd~---~gl~~~Ldyl~~lGv~~I~L~P---i~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~ 93 (523)
|.+ ++|...|..||.+||+.|-+-= |.|. .+| ..| .. .
T Consensus 101 ~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~--------~~p------------~~Y--------dW--------s 144 (548)
T PLN02803 101 GNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEK--------DGP------------MKY--------NW--------E 144 (548)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeecc--------CCC------------CcC--------Cc--------H
Confidence 555 8899999999999999986532 2221 111 111 12 6
Q ss_pred HHHHHHHHHHHCCCEEEEeeccccccCC
Q 009902 94 EFKEMVKALHGAGIEVILDVVYNHTNEA 121 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~nH~~~~ 121 (523)
-.++|.+.+++.|+||..=+-+.-++.+
T Consensus 145 gY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 145 GYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 6888999999999999888888766653
No 271
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=33.74 E-value=40 Score=34.35 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=20.5
Q ss_pred CCCchHHHHHHHHHHHHHCC-CEEEEeecc
Q 009902 87 GPLKASWEFKEMVKALHGAG-IEVILDVVY 115 (523)
Q Consensus 87 ~~~~~~~dl~~Lv~~aH~~G-i~VilD~V~ 115 (523)
.|.-.+-|++++++.||++| +.||+|=.+
T Consensus 151 NP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 151 NPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp TTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred CcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 34444699999999999999 999999554
No 272
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=33.74 E-value=1.6e+02 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=20.8
Q ss_pred cHHhHHhcchHHHHcCCCEEEECCCccc
Q 009902 21 SYLGLIQKIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 21 d~~gl~~~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
+.....+-++.|.++||..|.+.-....
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~ 44 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASP 44 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCc
Confidence 4455555578888999999999876554
No 273
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=33.44 E-value=48 Score=29.97 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=18.3
Q ss_pred CCCchHHHHHHHHHHHHHCCCEE
Q 009902 87 GPLKASWEFKEMVKALHGAGIEV 109 (523)
Q Consensus 87 ~~~~~~~dl~~Lv~~aH~~Gi~V 109 (523)
.+++..+||+++.++|-++||.+
T Consensus 158 ~Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 158 GGLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp TTTTTHHHHHHHHHHHHHCT-EE
T ss_pred CCcccHHHHHHHHHHHHHcCcee
Confidence 34455799999999999999876
No 274
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=33.41 E-value=46 Score=32.98 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEcc
Q 009902 161 NHPVVMELILDSLRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 161 ~~p~v~~~i~~~~~~w~~~~gvDGfR~D~ 189 (523)
.+++-|+.+++.+..+++++|+||+-||-
T Consensus 95 ~~~~~r~~f~~~i~~~l~~y~~DGidiD~ 123 (343)
T PF00704_consen 95 SNPAKRQNFINNIVSFLKKYGFDGIDIDW 123 (343)
T ss_dssp HSHHHHHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred ccHHHHHHHHHhhhhhhcccCcceeeeee
Confidence 35778999999999999999999999983
No 275
>PRK09936 hypothetical protein; Provisional
Probab=32.98 E-value=1.4e+02 Score=28.94 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=42.4
Q ss_pred HHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 009902 22 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 101 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~ 101 (523)
-....+.+.-++++||++|.+-= -+|. ++.||+. ---|..++++
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQW----------------------t~yG-------~~~fg~~-------~g~La~~l~~ 80 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQW----------------------TRYG-------DADFGGQ-------RGWLAKRLAA 80 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEe----------------------eecc-------CCCcccc-------hHHHHHHHHH
Confidence 45566678899999999998541 0331 1256664 2569999999
Q ss_pred HHHCCCEEEEeecc
Q 009902 102 LHGAGIEVILDVVY 115 (523)
Q Consensus 102 aH~~Gi~VilD~V~ 115 (523)
|++.||+|++=+-+
T Consensus 81 A~~~Gl~v~vGL~~ 94 (296)
T PRK09936 81 AQQAGLKLVVGLYA 94 (296)
T ss_pred HHHcCCEEEEcccC
Confidence 99999999987754
No 276
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=32.75 E-value=41 Score=34.51 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=30.1
Q ss_pred CcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeec
Q 009902 72 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 72 ~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
.-+..+....|+- .+++++++.||++|..|++|.+
T Consensus 166 vais~vSn~tG~~--------~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 166 VALSHVSNVTGTV--------NPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred EEEECcccccccc--------chHHHHHHHHHHcCCEEEEECc
Confidence 3445667778997 9999999999999999999987
No 277
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.42 E-value=3.2e+02 Score=26.85 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=45.0
Q ss_pred cHHhHHhc----chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCC-----CCCCCCCCCCCCCCch
Q 009902 21 SYLGLIQK----IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF-----SPMSRYAAGGGGPLKA 91 (523)
Q Consensus 21 d~~gl~~~----Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~-----~vd~~~Gt~~~~~~~~ 91 (523)
+++.+++. ...+++.||+.|.|.. .|||-+..|. .-+..||.. .+.|
T Consensus 135 ei~~~i~~~~~aA~~a~~aGfDgveih~---------------------~~gyL~~qFlsp~~n~R~d~yGgs---~enr 190 (327)
T cd02803 135 EIEQIIEDFAAAARRAKEAGFDGVEIHG---------------------AHGYLLSQFLSPYTNKRTDEYGGS---LENR 190 (327)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcc---------------------hhhhHHHHhcCccccCCCcccCCC---HHHH
Confidence 35555554 3577889999999974 2366433332 233456753 3455
Q ss_pred HHHHHHHHHHHHHC---CCEEEEeeccc
Q 009902 92 SWEFKEMVKALHGA---GIEVILDVVYN 116 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~---Gi~VilD~V~n 116 (523)
..-+.+.|+++++. ++.|.+++-+.
T Consensus 191 ~r~~~eii~avr~~~g~d~~i~vris~~ 218 (327)
T cd02803 191 ARFLLEIVAAVREAVGPDFPVGVRLSAD 218 (327)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEechh
Confidence 55667777777764 67888887553
No 278
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=32.41 E-value=55 Score=33.25 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=41.7
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|..|+++||+.|.|-- ++. +..-...+.... +. ++..+.++.+++.+
T Consensus 105 e~L~~l~~~GvnrislGv--QS~--------------------~d~vL~~l~R~~-~~--------~~~~~ai~~~~~~~ 153 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGV--QAL--------------------NDADLRFLGRLH-SV--------AEALAAIDLAREIF 153 (380)
T ss_pred HHHHHHHHcCCCEEEEec--ccC--------------------CHHHHHHcCCCC-CH--------HHHHHHHHHHHHhC
Confidence 678888888888888763 221 111111222222 32 88888899999999
Q ss_pred CEEEEeeccccccC
Q 009902 107 IEVILDVVYNHTNE 120 (523)
Q Consensus 107 i~VilD~V~nH~~~ 120 (523)
+.|-+|+.++--+.
T Consensus 154 ~~v~~dli~GlPgq 167 (380)
T PRK09057 154 PRVSFDLIYARPGQ 167 (380)
T ss_pred ccEEEEeecCCCCC
Confidence 99999999865443
No 279
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=32.34 E-value=60 Score=24.40 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 009902 93 WEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vil 111 (523)
.+..++++.|+++|.++|.
T Consensus 61 ~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 61 EELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 8899999999999999874
No 280
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=32.30 E-value=57 Score=31.96 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCEEEEeec
Q 009902 93 WEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
+.+.+|++.|+++|.+|++|.-
T Consensus 146 d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 146 DAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred HHHHHHHHHHHhcCCeEEEECC
Confidence 8899999999999999999974
No 281
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=32.15 E-value=84 Score=31.20 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 009902 93 WEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vil 111 (523)
+|+.++++-++++|+.+.+
T Consensus 170 ~ei~~~~~~~~~~gi~~~~ 188 (329)
T PRK13361 170 DEVLDLVEFCRERGLDIAF 188 (329)
T ss_pred HHHHHHHHHHHhcCCeEEE
Confidence 8899999999999987753
No 282
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.05 E-value=2.9e+02 Score=31.08 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHHHC-CCEEEEeeccccccCCCCC-CCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCC---HH
Q 009902 90 KASWEFKEMVKALHGA-GIEVILDVVYNHTNEADDA-NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---PV 164 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~-Gi~VilD~V~nH~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~---p~ 164 (523)
+.++.++++++++|+. |-++++-+ +|.+..... -+|...........|....+...........| -..+. .+
T Consensus 472 ~~i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p-~~mt~~eI~~ 548 (765)
T PRK08255 472 EQEAAWKRIVDFVHANSDAKIGIQL--GHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVP-REMTRADMDR 548 (765)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEc--cCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCC-CcCCHHHHHH
Confidence 4578899999999999 69998887 788873211 11210000000001111111110000000011 01112 23
Q ss_pred HHHHHHHHHHHHHHhccccEEEEccccc
Q 009902 165 VMELILDSLRHWVVEYHVDGFRFDLASV 192 (523)
Q Consensus 165 v~~~i~~~~~~w~~~~gvDGfR~D~~~~ 192 (523)
+.+.+.++++.-. +.|+||+-|-+++.
T Consensus 549 ~i~~f~~aA~~a~-~aGfDgveih~ahG 575 (765)
T PRK08255 549 VRDDFVAAARRAA-EAGFDWLELHCAHG 575 (765)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEecccc
Confidence 5556666677666 78999999998853
No 283
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=31.98 E-value=1.7e+02 Score=28.35 Aligned_cols=64 Identities=14% Similarity=-0.000 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHH
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 169 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i 169 (523)
+.++.+++.|+.|+++|++|..-+..-...+ ++.. .. -+++
T Consensus 117 e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~---~~~~---------------------------------~~---~~~~ 157 (287)
T PRK05692 117 ESLERFEPVAEAAKQAGVRVRGYVSCVLGCP---YEGE---------------------------------VP---PEAV 157 (287)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEEEEecCC---CCCC---------------------------------CC---HHHH
Confidence 4567799999999999999987776532222 0000 00 2578
Q ss_pred HHHHHHHHHhccccEEEEc-ccccc
Q 009902 170 LDSLRHWVVEYHVDGFRFD-LASVL 193 (523)
Q Consensus 170 ~~~~~~w~~~~gvDGfR~D-~~~~~ 193 (523)
.+.++... +.|+|.+++- +++.+
T Consensus 158 ~~~~~~~~-~~G~d~i~l~DT~G~~ 181 (287)
T PRK05692 158 ADVAERLF-ALGCYEISLGDTIGVG 181 (287)
T ss_pred HHHHHHHH-HcCCcEEEeccccCcc
Confidence 88888888 7999999884 66554
No 284
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.83 E-value=2.2e+02 Score=27.12 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=46.2
Q ss_pred cccCCCCCCCCCCCCCCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCC
Q 009902 2 NVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRY 81 (523)
Q Consensus 2 ~~~~f~~~~~~g~~~~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~ 81 (523)
-|=||+|. ..+ -+...+.++.....+-|.+.|=+...... | |....
T Consensus 9 tpdSF~dg--~~~-----~~~~~~~~~a~~~~~~GA~iIDIG~~st~----------p--------~~~~i--------- 54 (257)
T TIGR01496 9 TPDSFSDG--GRF-----LSVDKAVAHAERMLEEGADIIDVGGESTR----------P--------GADRV--------- 54 (257)
T ss_pred CCCCCCCC--CCC-----CCHHHHHHHHHHHHHCCCCEEEECCCCCC----------C--------CCCCC---------
Confidence 46688554 222 35678888888889999999999653221 1 11111
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHC-CCEEEEe
Q 009902 82 AAGGGGPLKASWEFKEMVKALHGA-GIEVILD 112 (523)
Q Consensus 82 Gt~~~~~~~~~~dl~~Lv~~aH~~-Gi~VilD 112 (523)
... +-++.++.+|++++++ ++.|.+|
T Consensus 55 ~~~-----~E~~rl~~~v~~~~~~~~~plsiD 81 (257)
T TIGR01496 55 SPE-----EELNRVVPVIKALRDQPDVPISVD 81 (257)
T ss_pred CHH-----HHHHHHHHHHHHHHhcCCCeEEEe
Confidence 011 1123388888999998 9999998
No 285
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=31.53 E-value=1.2e+02 Score=23.08 Aligned_cols=60 Identities=17% Similarity=0.063 Sum_probs=29.6
Q ss_pred EEEEEeCCCCcEEEEcCCCCCCCCeEEEEe-CCCCCCCCCCCCCC-CCCCCeEEEcCCEEEEEEe
Q 009902 460 IYLAFNAHDFFVKVSLPPPPPKRQWFRVVD-TNLESPDDIVPEGA-AGTGSTYNLSPYSSILLEA 522 (523)
Q Consensus 460 ~lvv~N~s~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~l~p~~~~vl~~ 522 (523)
.+.|.|.++.++++..+. +.++..++- ......-..+.... ...-.+.+|+|.+.++|+.
T Consensus 5 ~l~v~N~s~~~v~l~f~s---gq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~ 66 (82)
T PF12690_consen 5 TLTVTNNSDEPVTLQFPS---GQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEE 66 (82)
T ss_dssp EEEEEE-SSS-EEEEESS---S--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEE
T ss_pred EEEEEeCCCCeEEEEeCC---CCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEE
Confidence 567889999999999887 345454443 22221111111111 1122588999999999874
No 286
>PRK12677 xylose isomerase; Provisional
Probab=31.50 E-value=53 Score=33.44 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=40.3
Q ss_pred HHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCC-CCC--CCCCCCCCCCCchHHHHHHH
Q 009902 22 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF-SPM--SRYAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~-~vd--~~~Gt~~~~~~~~~~dl~~L 98 (523)
++-+.+-+++-++||++.|-+.| |+...+|. +.+ ..+-. -.+-|++|
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~-----------------------G~~g~~~~~~~d~~~a~~~-------~~eaL~~l 162 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWG-----------------------GREGAEYDAAKDVRAALDR-------YREAIDLL 162 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEee-----------------------CCCCccCcccCCHHHHHHH-------HHHHHHHH
Confidence 44456668999999999998876 22222210 111 00111 13667889
Q ss_pred HHHHHHCC--CEEEEeeccc
Q 009902 99 VKALHGAG--IEVILDVVYN 116 (523)
Q Consensus 99 v~~aH~~G--i~VilD~V~n 116 (523)
.+.|.++| |+|.|+--++
T Consensus 163 ~~~A~~~G~gV~laIEpkp~ 182 (384)
T PRK12677 163 AAYVKDQGYDLRFALEPKPN 182 (384)
T ss_pred HHHHHhcCCCcEEEEccCCC
Confidence 99998855 9999987543
No 287
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=31.37 E-value=1.2e+02 Score=30.54 Aligned_cols=28 Identities=29% Similarity=0.213 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
++++++++.|+++|+-||.|-++.+...
T Consensus 184 ~~~~~i~~~a~~~~~~ii~De~y~~l~~ 211 (383)
T TIGR03540 184 KFFKELVEFAKEYNIIVCHDNAYSEITF 211 (383)
T ss_pred HHHHHHHHHHHHcCEEEEEecchhhhcc
Confidence 8999999999999999999999876553
No 288
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=31.16 E-value=65 Score=32.88 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=42.8
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|..|+++|||-|.|.. ++ .+..-...+. |.-+. ++..+.++.|++.+
T Consensus 112 e~l~~l~~~GvnRiSiGv--QS--------------------~~d~~L~~lg-R~h~~--------~~~~~ai~~~~~~~ 160 (390)
T PRK06582 112 EKFKAFKLAGINRVSIGV--QS--------------------LKEDDLKKLG-RTHDC--------MQAIKTIEAANTIF 160 (390)
T ss_pred HHHHHHHHCCCCEEEEEC--Cc--------------------CCHHHHHHcC-CCCCH--------HHHHHHHHHHHHhC
Confidence 678889999999888874 22 1111111222 22233 78888889999999
Q ss_pred CEEEEeeccccccC
Q 009902 107 IEVILDVVYNHTNE 120 (523)
Q Consensus 107 i~VilD~V~nH~~~ 120 (523)
..|-+|++++.-+.
T Consensus 161 ~~v~~DlI~GlPgq 174 (390)
T PRK06582 161 PRVSFDLIYARSGQ 174 (390)
T ss_pred CcEEEEeecCCCCC
Confidence 99999999876554
No 289
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=31.05 E-value=1.3e+02 Score=30.13 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHCCCEEEEeecc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+...+.++.+++.|++|.+-+|+
T Consensus 132 ~~v~~~i~~l~~~g~~v~v~~vv 154 (358)
T TIGR02109 132 EQKLAMARAVKAAGLPLTLNFVI 154 (358)
T ss_pred HHHHHHHHHHHhCCCceEEEEEe
Confidence 44555667888899988776665
No 290
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=30.88 E-value=1.1e+02 Score=30.00 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=42.8
Q ss_pred HHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 009902 22 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 101 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~ 101 (523)
|.+-.++|+-+.++|+-.|-|. +.. ...+|..+..- ...|=. ..=++||++
T Consensus 107 ~~~dl~~L~~~~~~GvR~lglt--wn~---------------~N~~g~g~~~~----~~~GLs--------~~Gk~lV~~ 157 (313)
T COG2355 107 LGDDLDKLELFHALGVRSLGLT--WNR---------------DNLFGDGCYER----TGGGLT--------PFGKELVRE 157 (313)
T ss_pred ccccHHHHHHHHHhCceEEEee--ecc---------------CCcccCccCCC----CCCCCC--------HHHHHHHHH
Confidence 4445667889999998877754 433 13334444322 122322 556899999
Q ss_pred HHHCCCEEEEeeccccccC
Q 009902 102 LHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 102 aH~~Gi~VilD~V~nH~~~ 120 (523)
|+++| ||+|+ .|++.
T Consensus 158 ~N~Lg--IiiDl--SH~s~ 172 (313)
T COG2355 158 MNELG--IIIDL--SHLSD 172 (313)
T ss_pred HHhcC--CEEEe--cccCC
Confidence 99988 67887 68887
No 291
>PLN02389 biotin synthase
Probab=30.84 E-value=94 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHCCCEEEEeecccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
++-.+.++.||+.||+|..=+++.|
T Consensus 213 e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 213 DDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHHHHcCCeEeEEEEECC
Confidence 7888999999999999999999988
No 292
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=30.69 E-value=56 Score=33.40 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=43.0
Q ss_pred hcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC
Q 009902 27 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 106 (523)
Q Consensus 27 ~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~G 106 (523)
++|..|+++|||.|.|-- ++. +..-+..+.... +. ++..+.++.+++.+
T Consensus 123 e~L~~l~~~GvnrisiGv--QS~--------------------~~~~L~~l~R~~-~~--------~~~~~~i~~~~~~~ 171 (394)
T PRK08898 123 EKFAQFRASGVNRLSIGI--QSF--------------------NDAHLKALGRIH-DG--------AEARAAIEIAAKHF 171 (394)
T ss_pred HHHHHHHHcCCCeEEEec--ccC--------------------CHHHHHHhCCCC-CH--------HHHHHHHHHHHHhC
Confidence 678999999999999863 221 111111222222 22 77888889999988
Q ss_pred CEEEEeeccccccC
Q 009902 107 IEVILDVVYNHTNE 120 (523)
Q Consensus 107 i~VilD~V~nH~~~ 120 (523)
..|-+|++++.-+.
T Consensus 172 ~~v~~dlI~GlPgq 185 (394)
T PRK08898 172 DNFNLDLMYALPGQ 185 (394)
T ss_pred CceEEEEEcCCCCC
Confidence 99999999876654
No 293
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.62 E-value=66 Score=30.74 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=38.5
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 103 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH 103 (523)
-+...++.-+.||+..|-+.|... +|... -+..+-. -++-|++|++.|.
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~~~~~--------------------~~~~~----~~~~~~~-------~~~~l~~l~~~a~ 139 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLISAAHA--------------------GYLTP----PNVIWGR-------LAENLSELCEYAE 139 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCC--------------------CCCCC----HHHHHHH-------HHHHHHHHHHHHH
Confidence 344456888999999998877432 22111 0111111 1356999999999
Q ss_pred HCCCEEEEee
Q 009902 104 GAGIEVILDV 113 (523)
Q Consensus 104 ~~Gi~VilD~ 113 (523)
++||++.+.-
T Consensus 140 ~~gv~l~iE~ 149 (275)
T PRK09856 140 NIGMDLILEP 149 (275)
T ss_pred HcCCEEEEec
Confidence 9999999984
No 294
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=30.48 E-value=56 Score=32.68 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHhccccEEEEcc
Q 009902 162 HPVVMELILDSLRHWVVEYHVDGFRFDL 189 (523)
Q Consensus 162 ~p~v~~~i~~~~~~w~~~~gvDGfR~D~ 189 (523)
+++.|+.+++.+..+++++|+||+-||-
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDw 115 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDW 115 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeecc
Confidence 6889999999999999999999999993
No 295
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=30.27 E-value=65 Score=32.61 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCE-EEEeecccccc
Q 009902 93 WEFKEMVKALHGAGIE-VILDVVYNHTN 119 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~-VilD~V~nH~~ 119 (523)
++..+-++.+++.|+. |-+|+.++..+
T Consensus 135 ~~~~~ai~~l~~~g~~~v~~dli~GlPg 162 (374)
T PRK05799 135 EEFLENYKLARKLGFNNINVDLMFGLPN 162 (374)
T ss_pred HHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 8899999999999997 77999876544
No 296
>PRK13561 putative diguanylate cyclase; Provisional
Probab=30.25 E-value=62 Score=35.53 Aligned_cols=77 Identities=10% Similarity=0.056 Sum_probs=50.1
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCC------CcCcCCCCCCCCCCCCCCCCchHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGY------STINFFSPMSRYAAGGGGPLKASW 93 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY------~~~d~~~vd~~~Gt~~~~~~~~~~ 93 (523)
.+...+.+.+..|+++||..-. =.. |.+ +.+..| -+.||-+||..|=..-. .. -.
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l----ddf---------G~g---~ssl~~L~~l~~l~~d~lKiD~s~i~~i~--~~-~~ 591 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL----DDF---------GMG---YAGLRQLQHMKSLPIDVLKIDKMFVDGLP--ED-DS 591 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE----ECC---------CCC---cccHHHHhhcCCCCCcEEEECHHHHhcCC--CC-HH
Confidence 5667778888999999996543 111 110 111111 35788888877643311 00 14
Q ss_pred HHHHHHHHHHHCCCEEEEeecc
Q 009902 94 EFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
-++.+++.||..||+||.+.|=
T Consensus 592 ~v~~i~~~a~~l~i~viAegVE 613 (651)
T PRK13561 592 MVAAIIMLAQSLNLQVIAEGVE 613 (651)
T ss_pred HHHHHHHHHHHCCCcEEEecCC
Confidence 5899999999999999999883
No 297
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=30.21 E-value=1e+02 Score=24.30 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=21.6
Q ss_pred HhHHhcchHHHHcCCCEEEECCCccc
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
..+.+.|+.+.+.|++.|.+.|++=.
T Consensus 44 p~~~~~l~~l~~~g~~~v~vvPlfl~ 69 (101)
T cd03416 44 PSLAEALDELAAQGATRIVVVPLFLL 69 (101)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeeEeC
Confidence 34566678888899999999999987
No 298
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.76 E-value=1.3e+02 Score=30.27 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCEEEEeec
Q 009902 95 FKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V 114 (523)
..+||+.||+.||+|+.=-|
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTv 299 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTL 299 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEe
Confidence 46899999999999976544
No 299
>PRK05939 hypothetical protein; Provisional
Probab=29.65 E-value=62 Score=33.11 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+.+++++++.||++|+.||+|-+.
T Consensus 147 v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 147 VADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHhHHHHHHHHHHcCCEEEEECCc
Confidence 489999999999999999999864
No 300
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=29.60 E-value=5.5e+02 Score=25.17 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=65.3
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
=.+..+.+.+..+.++|+.+|-|-|+-+. +. + .++..|++-. =+++-|
T Consensus 48 ~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~-----Kd---~----~gs~A~~~~g--------------------~v~~ai 95 (314)
T cd00384 48 LSVDSLVEEAEELADLGIRAVILFGIPEH-----KD---E----IGSEAYDPDG--------------------IVQRAI 95 (314)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEECCCCC-----CC---C----CcccccCCCC--------------------hHHHHH
Confidence 35788899999999999999999999432 00 0 1111232221 133334
Q ss_pred HHHHHC--CCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHH
Q 009902 100 KALHGA--GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWV 177 (523)
Q Consensus 100 ~~aH~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~ 177 (523)
+++++. .|-||-|+.+..-...+ |... .. .. .-.|.+..+.+.+...-..
T Consensus 96 r~iK~~~p~l~vi~DvcLc~YT~hG--HcGi-------------------l~------~~-~idND~Tl~~L~k~Als~A 147 (314)
T cd00384 96 RAIKEAVPELVVITDVCLCEYTDHG--HCGI-------------------LK------DD-YVDNDATLELLAKIAVSHA 147 (314)
T ss_pred HHHHHhCCCcEEEEeeeccCCCCCC--ccee-------------------cc------CC-cCccHHHHHHHHHHHHHHH
Confidence 444443 89999999987665421 1111 00 00 2346788888888888888
Q ss_pred HhccccEE
Q 009902 178 VEYHVDGF 185 (523)
Q Consensus 178 ~~~gvDGf 185 (523)
+-|+|-.
T Consensus 148 -~AGADiV 154 (314)
T cd00384 148 -EAGADIV 154 (314)
T ss_pred -HcCCCee
Confidence 7899854
No 301
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=29.00 E-value=67 Score=26.42 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=36.4
Q ss_pred hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEE
Q 009902 30 PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEV 109 (523)
Q Consensus 30 dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~V 109 (523)
..+..+|..++.+.+...... .-......|..-+=+.=|.. .++.++++.||++|++|
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~--------------~~~~~~~~d~vi~iS~sG~t--------~~~~~~~~~a~~~g~~v 77 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHG--------------DLGMVTPGDVVIAISNSGET--------DELLNLLPHLKRRGAPI 77 (128)
T ss_pred HHhhcCCCceEEcccchhhcc--------------ccCcCCCCCEEEEEeCCCCC--------HHHHHHHHHHHHCCCeE
Confidence 445668999988865322100 00011222322233445666 99999999999999998
Q ss_pred EE
Q 009902 110 IL 111 (523)
Q Consensus 110 il 111 (523)
|.
T Consensus 78 i~ 79 (128)
T cd05014 78 IA 79 (128)
T ss_pred EE
Confidence 75
No 302
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=28.97 E-value=63 Score=30.92 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEeeccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
+.+|+++++.++++|+.||+|+=.+
T Consensus 72 i~~l~~~~~~~~~~g~~VilD~K~~ 96 (261)
T TIGR02127 72 FKALEEVIAHARSLGLPVLADVKRG 96 (261)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3788889999999999999999654
No 303
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=28.94 E-value=1e+02 Score=33.96 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
++|++|++.||+.||.+++++
T Consensus 147 ~~l~~l~~~a~~lGme~LvEv 167 (695)
T PRK13802 147 AQLKHLLDLAHELGMTVLVET 167 (695)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 789999999999999999998
No 304
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=28.82 E-value=1.1e+02 Score=27.54 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCEEEEeecc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+.++++++.|+++|+++++++.-
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~~~ 112 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDLIG 112 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeC
Confidence 66899999999999999999653
No 305
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=28.72 E-value=1.1e+02 Score=30.35 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=10.6
Q ss_pred ccHHhHHhcchHHHHcCCC
Q 009902 20 GSYLGLIQKIPHLLELGIN 38 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~ 38 (523)
|.|+.+++.+..+++.|+.
T Consensus 146 g~f~~~l~~I~~l~~~G~~ 164 (318)
T TIGR03470 146 GVFDRAVEAIREAKARGFR 164 (318)
T ss_pred CcHHHHHHHHHHHHHCCCc
Confidence 5555555555555555553
No 306
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=28.60 E-value=1.2e+02 Score=28.54 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHCCCEEEEeecc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
++++++++.||++||++++=+-+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC
Confidence 78999999999999999997755
No 307
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=28.43 E-value=1.5e+02 Score=32.28 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=29.3
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHh-ccccEEEEccc
Q 009902 156 NTLNCNHPVVMELILDSLRHWVVE-YHVDGFRFDLA 190 (523)
Q Consensus 156 ~dln~~~p~v~~~i~~~~~~w~~~-~gvDGfR~D~~ 190 (523)
..+|-.+|+.++++.+.|+.|+++ =.+|-.|+-.-
T Consensus 178 ip~Dvr~p~t~~~~~~~l~~wl~~~p~~dVvRfTTf 213 (719)
T TIGR02336 178 IPFDIYHPATRKHVFDTFEQWLKDSPQTDVVRFTTF 213 (719)
T ss_pred CCcCCcChHHHHHHHHHHHHHHHhCCCCcEEEEeee
Confidence 457888999999999999999976 67888888643
No 308
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=28.41 E-value=91 Score=31.06 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
++++++++.|.++|+-||.|-++.-...
T Consensus 168 ~~l~~l~~~~~~~~~~ii~De~y~~~~~ 195 (363)
T PF00155_consen 168 EELRELAELAREYNIIIIVDEAYSDLIF 195 (363)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTTTGBS
T ss_pred ccccchhhhhcccccceeeeeceecccc
Confidence 9999999999999999999999876665
No 309
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=28.35 E-value=1.1e+02 Score=29.12 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.3
Q ss_pred HhHHhcchHHHHcCCCEEEECC
Q 009902 23 LGLIQKIPHLLELGINAVELLP 44 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~P 44 (523)
..+.+.|+.++++|++.|.|.|
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~ 36 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSP 36 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCC
Confidence 4566789999999999999997
No 310
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=28.34 E-value=30 Score=31.23 Aligned_cols=45 Identities=20% Similarity=0.091 Sum_probs=33.5
Q ss_pred chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCE
Q 009902 29 IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIE 108 (523)
Q Consensus 29 Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~ 108 (523)
|..++++|++.|.+.+..... .... . ++++++.+.+.+.||+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~---------------------~~~~---------~--------~~~~~~~~~~~~~gl~ 42 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQP---------------------WDEK---------D--------DEAEELRRLLEDYGLK 42 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSH---------------------HTHH---------H--------HHHHHHHHHHHHTTCE
T ss_pred ChHHHHcCCCEEEEecCCCcc---------------------cccc---------h--------HHHHHHHHHHHHcCCe
Confidence 467899999999999865430 0000 2 7899999999999999
Q ss_pred EEE
Q 009902 109 VIL 111 (523)
Q Consensus 109 Vil 111 (523)
|..
T Consensus 43 i~~ 45 (213)
T PF01261_consen 43 IAS 45 (213)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 311
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=28.17 E-value=63 Score=33.26 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEc
Q 009902 161 NHPVVMELILDSLRHWVVEYHVDGFRFD 188 (523)
Q Consensus 161 ~~p~v~~~i~~~~~~w~~~~gvDGfR~D 188 (523)
.+++.|+.+++.+..+++++|+||+-||
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 5688999999999999999999999999
No 312
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=28.15 E-value=4.2e+02 Score=29.22 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=67.4
Q ss_pred HhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~a 102 (523)
..+.++|.-.|.+|+|+|-+..+.=+.. .|..+ -| | |+. -|.. +++.|
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~-------eP~eG-----~f---d-------f~~---------~D~~-~l~~a 77 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLH-------EPEEG-----KF---D-------FTW---------LDEI-FLERA 77 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeecc-------Ccccc-----cc---C-------ccc---------chHH-HHHHH
Confidence 6788899999999999999977654411 11110 11 2 223 3444 89999
Q ss_pred HHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHh---
Q 009902 103 HGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE--- 179 (523)
Q Consensus 103 H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~--- 179 (523)
++.|+.|||==.++-..+ .|.. ...+++-..++++....+.+. ....+.+|--+++...++....+.
T Consensus 78 ~~~Gl~vil~t~P~g~~P-----~Wl~----~~~PeiL~~~~~~~~~~~g~r-~~~~~~~~~Yr~~~~~i~~~irer~~~ 147 (673)
T COG1874 78 YKAGLYVILRTGPTGAPP-----AWLA----KKYPEILAVDENGRVRSDGAR-ENICPVSPVYREYLDRILQQIRERLYG 147 (673)
T ss_pred HhcCceEEEecCCCCCCc-----hHHh----cCChhheEecCCCcccCCCcc-cccccccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999765522222 2221 111444444444433333221 224455564444444433333322
Q ss_pred --ccccEEEEcc
Q 009902 180 --YHVDGFRFDL 189 (523)
Q Consensus 180 --~gvDGfR~D~ 189 (523)
-.|=+|-+|.
T Consensus 148 ~~~~v~~w~~dn 159 (673)
T COG1874 148 NGPAVITWQNDN 159 (673)
T ss_pred cCCceeEEEccC
Confidence 3455566664
No 313
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.12 E-value=1.3e+02 Score=27.37 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
..+.++++.|+++||++++++
T Consensus 89 ~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred HHHHHHHHHHHHcCCEEEEEe
Confidence 568999999999999999975
No 314
>PLN02905 beta-amylase
Probab=27.85 E-value=2.2e+02 Score=30.71 Aligned_cols=66 Identities=11% Similarity=0.248 Sum_probs=46.9
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECC---CcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLP---VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~P---i~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
-+.++|...|..||.+||+.|-+-= |.|. .+| .-| .. .-.+
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~--------~gP------------~~Y--------dW--------sgY~ 326 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEA--------HAP------------QEY--------NW--------NGYK 326 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeec--------CCC------------CcC--------Cc--------HHHH
Confidence 5678899999999999999986532 2221 111 111 12 6788
Q ss_pred HHHHHHHHCCCEEEEeeccccccCC
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEA 121 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~ 121 (523)
+|++.+++.||||..=+-+.-++.+
T Consensus 327 ~L~~mvr~~GLKlqvVMSFHqCGGN 351 (702)
T PLN02905 327 RLFQMVRELKLKLQVVMSFHECGGN 351 (702)
T ss_pred HHHHHHHHcCCeEEEEEEecccCCC
Confidence 8999999999999888888766653
No 315
>PRK05942 aspartate aminotransferase; Provisional
Probab=27.76 E-value=1.2e+02 Score=30.78 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+++++|++.|+++|+.||.|-++.....
T Consensus 190 ~~~~~i~~~a~~~~~~iI~De~y~~~~~ 217 (394)
T PRK05942 190 EFFEEIVAFARKYEIMLVHDLCYAELAF 217 (394)
T ss_pred HHHHHHHHHHHHcCeEEEEeccchhhcc
Confidence 8899999999999999999998765543
No 316
>PRK09989 hypothetical protein; Provisional
Probab=27.64 E-value=82 Score=29.87 Aligned_cols=24 Identities=4% Similarity=0.131 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
++.|+++.+.|.+.|+++.+.-+.
T Consensus 123 ~~~l~~l~~~a~~~gv~l~lE~l~ 146 (258)
T PRK09989 123 IDNLRYAADRFAPHGKRILVEALS 146 (258)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCC
Confidence 378999999999999999988753
No 317
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=27.50 E-value=2.3e+02 Score=27.26 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=19.4
Q ss_pred CchHHHHHHHHHHHHHCCCEEEEe
Q 009902 89 LKASWEFKEMVKALHGAGIEVILD 112 (523)
Q Consensus 89 ~~~~~dl~~Lv~~aH~~Gi~VilD 112 (523)
++.++.++++|+.|++.|++|.+.
T Consensus 115 ~~~~~~~~~~i~~ak~~G~~v~~~ 138 (273)
T cd07941 115 EENLAMIRDSVAYLKSHGREVIFD 138 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEe
Confidence 345677899999999999998764
No 318
>PRK05968 hypothetical protein; Provisional
Probab=26.74 E-value=77 Score=32.33 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+.+++++.+.||++|+.||+|-.+
T Consensus 163 ~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 163 LQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCC
Confidence 499999999999999999999864
No 319
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.58 E-value=83 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 009902 76 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 76 ~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~Vil 111 (523)
-+=+.-|+. .+..+.++.|+++|++||.
T Consensus 48 I~iS~SG~t--------~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 48 IAVSYSGNT--------EETLSAVEQAKERGAKIVA 75 (119)
T ss_pred EEEECCCCC--------HHHHHHHHHHHHCCCEEEE
Confidence 344566777 9999999999999999873
No 320
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.37 E-value=85 Score=31.95 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=41.1
Q ss_pred HHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 009902 22 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 101 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~ 101 (523)
++-+..-|++-++||+..|-+.|=.. |+....-......+-.. ++-|+++++.
T Consensus 114 i~~~kraId~A~eLGa~~v~v~~G~~--------------------g~~~~~~~d~~~a~~~~-------~e~L~~lae~ 166 (382)
T TIGR02631 114 LRKVLRNMDLGAELGAETYVVWGGRE--------------------GAEYDGAKDVRAALDRM-------REALNLLAAY 166 (382)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccCCC--------------------CCcCccccCHHHHHHHH-------HHHHHHHHHH
Confidence 45555568999999999998776211 11110000001111111 3668888888
Q ss_pred HHHC--CCEEEEeeccc
Q 009902 102 LHGA--GIEVILDVVYN 116 (523)
Q Consensus 102 aH~~--Gi~VilD~V~n 116 (523)
|.++ ||+|.|+-.+|
T Consensus 167 A~~~G~GV~laLEp~p~ 183 (382)
T TIGR02631 167 AEDQGYGLRFALEPKPN 183 (382)
T ss_pred HHhhCCCcEEEEccCCC
Confidence 9987 59999998765
No 321
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=26.15 E-value=55 Score=33.04 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+.|++++++.||++|+.||+|-.+
T Consensus 152 ~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 152 EFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred eeCHHHHHHHHHHcCCEEEEECCC
Confidence 479999999999999999999985
No 322
>PRK07050 cystathionine beta-lyase; Provisional
Probab=26.08 E-value=78 Score=32.33 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
..+++++++.||++|+.||+|-.+..
T Consensus 166 ~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 166 VPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred HhhHHHHHHHHHHcCCEEEEECCccc
Confidence 49999999999999999999998644
No 323
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=26.07 E-value=50 Score=32.05 Aligned_cols=22 Identities=23% Similarity=0.616 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHCCCEEEEeec
Q 009902 93 WEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
.+++++++.||++|+.||+|-+
T Consensus 170 ~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 170 YNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred cCHHHHHHHHHhcCCeEEEECc
Confidence 7899999999999999999987
No 324
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=25.73 E-value=81 Score=32.00 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEeeccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
+.+++++++.||++|+.||+|-+.-
T Consensus 151 ~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 151 IQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCc
Confidence 3999999999999999999998863
No 325
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=25.59 E-value=1.7e+02 Score=29.92 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+.+++|++-|+++|+-+|+|=|..+.+.
T Consensus 205 ~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 205 EFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 8899999999999999999999776655
No 326
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=25.55 E-value=84 Score=29.80 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCCEEEEeecccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
+.|+++.+.|.+.||++.+.-+ ||
T Consensus 124 ~~l~~l~~~a~~~Gv~l~lE~~-n~ 147 (258)
T PRK09997 124 ENLRYAANMLMKEDILLLIEPI-NH 147 (258)
T ss_pred HHHHHHHHHHHHcCCEEEEEeC-CC
Confidence 6689999999999999999875 55
No 327
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=25.23 E-value=73 Score=30.78 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
+.|+++|+.+++.|+.||+|+=.+
T Consensus 73 ~~l~~~i~~l~~~g~~VilD~K~~ 96 (278)
T PRK00125 73 AQLERTIAYLREAGVLVIADAKRG 96 (278)
T ss_pred hHHHHHHHHHHHCCCcEEEEeecC
Confidence 578889999999999999999654
No 328
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=25.23 E-value=67 Score=31.54 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH~~ 119 (523)
++++++|++.||++|+.||+|-+.....
T Consensus 151 ~~~l~~l~~~~~~~~~~~ivD~a~~~~~ 178 (350)
T cd00609 151 EEELEELAELAKKHGILIISDEAYAELV 178 (350)
T ss_pred HHHHHHHHHHHHhCCeEEEEecchhhce
Confidence 4889999999999999999999865433
No 329
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.15 E-value=60 Score=29.23 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=41.9
Q ss_pred HHhHHhcchHHHHcCCCEEEECCC---cccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHH
Q 009902 22 YLGLIQKIPHLLELGINAVELLPV---FEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~~I~L~Pi---~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~L 98 (523)
++.+.+.++..+.||+..|.+.|- ... ..... ..+ ....+-|++|
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~-------------------~~~~~------~~~-------~~~~~~l~~l 117 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGP-------------------EDDTE------ENW-------ERLAENLREL 117 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSST-------------------TSSHH------HHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCccccccc-------------------CCCHH------HHH-------HHHHHHHHHH
Confidence 677777789999999999998864 111 00000 000 0124679999
Q ss_pred HHHHHHCCCEEEEeecc
Q 009902 99 VKALHGAGIEVILDVVY 115 (523)
Q Consensus 99 v~~aH~~Gi~VilD~V~ 115 (523)
++.|.+.|++|.+.-..
T Consensus 118 ~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 118 AEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHTSEEEEE-SS
T ss_pred HhhhhhhcceEEEeccc
Confidence 99999999999998543
No 330
>PLN02591 tryptophan synthase
Probab=25.13 E-value=1.7e+02 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.132 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEeeccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
.+|..++++.|+++||..|+=+.++
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4899999999999999999933344
No 331
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=25.07 E-value=1.1e+02 Score=30.09 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
++++++++.||++|+.|++|-+..
T Consensus 165 ~~~~~i~~~~~~~~~~l~vD~a~~ 188 (345)
T cd06450 165 DPLEEIADLAEKYDLWLHVDAAYG 188 (345)
T ss_pred CCHHHHHHHHHHhCCeEEEechhh
Confidence 889999999999999999999854
No 332
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=24.98 E-value=76 Score=31.48 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
++|++|++.||+.||.+++++
T Consensus 217 ~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 217 LDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 689999999999999999998
No 333
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=24.91 E-value=73 Score=29.74 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeecc
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
..++++++++.||+.|+++|+|...
T Consensus 107 ~~~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 107 MLEELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3568999999999999999997643
No 334
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=24.59 E-value=1.3e+02 Score=31.74 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=38.1
Q ss_pred HhHHhcchHHH-HcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 009902 23 LGLIQKIPHLL-ELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 101 (523)
Q Consensus 23 ~gl~~~Ldyl~-~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~ 101 (523)
.++...|-+++ ++||..|-+--|+...-.......+ -|-.+.|| .-+.++++.
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--------~~~~~Ynf------------------~~lD~i~D~ 92 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--------DGIPPYNF------------------TYLDQILDF 92 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--------TEEEEE--------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhccCceEEEEEeeccCchhhcccccc--------CCCCcCCh------------------HHHHHHHHH
Confidence 44566788887 4999999999998431110000000 01122344 668888999
Q ss_pred HHHCCCEEEEeecc
Q 009902 102 LHGAGIEVILDVVY 115 (523)
Q Consensus 102 aH~~Gi~VilD~V~ 115 (523)
+.+.||+.++++-+
T Consensus 93 l~~~g~~P~vel~f 106 (486)
T PF01229_consen 93 LLENGLKPFVELGF 106 (486)
T ss_dssp HHHCT-EEEEEE-S
T ss_pred HHHcCCEEEEEEEe
Confidence 99999999999975
No 335
>PLN02705 beta-amylase
Probab=24.55 E-value=2.6e+02 Score=30.03 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=46.0
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECC---CcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLP---VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~P---i~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
-+-++|...|..||.+||+.|-+-= |.|. .+| ..| .. .-.+
T Consensus 265 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~--------~~P------------~~Y--------dW--------sgY~ 308 (681)
T PLN02705 265 VDPEGVRQELSHMKSLNVDGVVVDCWWGIVEG--------WNP------------QKY--------VW--------SGYR 308 (681)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeEeec--------CCC------------CcC--------Cc--------HHHH
Confidence 4557889999999999999986532 2221 111 111 12 6688
Q ss_pred HHHHHHHHCCCEEEEeeccccccCC
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEA 121 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~ 121 (523)
+|++.+++.||||..=+-+.-++.+
T Consensus 309 ~L~~mvr~~GLKlqvVmSFHqCGGN 333 (681)
T PLN02705 309 ELFNIIREFKLKLQVVMAFHEYGGN 333 (681)
T ss_pred HHHHHHHHcCCeEEEEEEeeccCCC
Confidence 8999999999999888888666553
No 336
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=24.42 E-value=89 Score=31.49 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
..+++++++.||++|+.||+|-++
T Consensus 152 ~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 152 ETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCC
Confidence 499999999999999999999876
No 337
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.40 E-value=7.9e+02 Score=25.31 Aligned_cols=98 Identities=11% Similarity=0.066 Sum_probs=58.6
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 103 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH 103 (523)
|+-.-+....++|.+++++..=.+. ++... .+ +. ++.++|.+.|.
T Consensus 142 G~~~a~~~a~~~g~~afqiF~~npr-------------------~w~~~-------~~-~~--------~~~~~f~~~~~ 186 (413)
T PTZ00372 142 GVDNSPINAYNIAGQAFALFLKNQR-------------------TWNSP-------PL-SD--------ETIDKFKENCK 186 (413)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCc-------------------cCCCC-------CC-CH--------HHHHHHHHHHH
Confidence 3444567888999999998762221 11111 11 12 88899999999
Q ss_pred HCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHH----HHHHHHHHHHh
Q 009902 104 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMEL----ILDSLRHWVVE 179 (523)
Q Consensus 104 ~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~----i~~~~~~w~~~ 179 (523)
+.||.+ ..+++ |.+. . ..|.-.++++|+. |.+.+..=- .
T Consensus 187 ~~gi~~-~~i~~-HapY-------l---------------------------INLASpd~e~rekSv~~~~~eL~rA~-~ 229 (413)
T PTZ00372 187 KYNYDP-KFILP-HGSY-------L---------------------------INLANPDKEKREKSYDAFLDDLQRCE-Q 229 (413)
T ss_pred HcCCCc-ceEEe-ecCc-------e---------------------------ecCCCCCHHHHHHHHHHHHHHHHHHH-H
Confidence 999872 22333 6664 1 0111223566555 555555544 7
Q ss_pred ccccEEEEcccccc
Q 009902 180 YHVDGFRFDLASVL 193 (523)
Q Consensus 180 ~gvDGfR~D~~~~~ 193 (523)
+|+++.-+-...+.
T Consensus 230 LGa~~VV~HPGs~~ 243 (413)
T PTZ00372 230 LGIKLYNFHPGSTV 243 (413)
T ss_pred cCCCEEEECCCcCC
Confidence 99999998765544
No 338
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.37 E-value=1.4e+02 Score=29.51 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHCCCEEE
Q 009902 93 WEFKEMVKALHGAGIEVI 110 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vi 110 (523)
+++.+|++.++++|+.|-
T Consensus 169 ~ei~~l~~~~~~~gv~~~ 186 (334)
T TIGR02666 169 DEIVDLAEFAKERGVTLR 186 (334)
T ss_pred HHHHHHHHHHHhcCCeEE
Confidence 789999999999998753
No 339
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=24.09 E-value=88 Score=30.92 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH~~ 119 (523)
.+++++|++.|+++|+.||+|-++-...
T Consensus 144 ~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 144 PETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred HHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 4889999999999999999999874333
No 340
>PLN02509 cystathionine beta-lyase
Probab=24.06 E-value=90 Score=32.70 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+.+++++++.||++|+.||+|-.+
T Consensus 233 i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 233 ISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCc
Confidence 599999999999999999999873
No 341
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=24.06 E-value=70 Score=35.99 Aligned_cols=85 Identities=6% Similarity=-0.071 Sum_probs=50.9
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 99 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv 99 (523)
-++..+.+.|..|+++||..-. -=+-.. .....+..--+.||-++|..|-..-......-.-++.++
T Consensus 675 ~~~~~~~~~l~~l~~~G~~i~l-d~fg~~------------~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~ 741 (799)
T PRK11359 675 EHDTEIFKRIQILRDMGVGLSV-DDFGTG------------FSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAIT 741 (799)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCc------------hhhHHHHhhCCCCEEEECHHHHhhcccChhHHHHHHHHH
Confidence 4567778889999999996432 211000 000000011236777888877433212222234589999
Q ss_pred HHHHHCCCEEEEeecccc
Q 009902 100 KALHGAGIEVILDVVYNH 117 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~nH 117 (523)
.-||+.||+||++.|=+.
T Consensus 742 ~~~~~~~i~via~gVe~~ 759 (799)
T PRK11359 742 SIGQSLNLTVVAEGVETK 759 (799)
T ss_pred HHHHHCCCeEEEEcCCCH
Confidence 999999999999998543
No 342
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.04 E-value=1.9e+02 Score=27.47 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
.++..++++.|+++|+..++=+.++.
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 38899999999999999986555543
No 343
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=23.98 E-value=1.9e+02 Score=29.27 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+.+++|++.|+++|+-||+|-|+...+.
T Consensus 203 ~~l~~l~~l~~~~~~~lI~DE~~~g~g~ 230 (396)
T PRK02627 203 EYLQALRELCDENGILLILDEVQTGMGR 230 (396)
T ss_pred HHHHHHHHHHHHcCCEEEEechhcCCCc
Confidence 7799999999999999999999765543
No 344
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.96 E-value=1.8e+02 Score=29.38 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
++.+++++...++|+=.++|+.+--.+.
T Consensus 192 ~qW~~l~~~~~~r~lip~~D~AYQGF~~ 219 (396)
T COG1448 192 EQWQELADLIKERGLIPFFDIAYQGFAD 219 (396)
T ss_pred HHHHHHHHHHHHcCCeeeeehhhhhhcc
Confidence 9999999999999999999999876665
No 345
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.83 E-value=1.2e+02 Score=29.92 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCCCCCCCccHHhHHhc--chHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCC
Q 009902 12 SGLDPEIRGSYLGLIQK--IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPL 89 (523)
Q Consensus 12 ~g~~~~~~Gd~~gl~~~--Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~ 89 (523)
.|++....|.+..+++. ..+||++|.++|=++=-+.... --.|+ .
T Consensus 94 tGyD~~~~gRl~~ll~~ws~~rike~GadavK~Llyy~pD~-----------------------~~ein----------~ 140 (329)
T PRK04161 94 TGYDATTTSRLPDCLVEWSVKRLKEAGADAVKFLLYYDVDG-----------------------DEEIN----------D 140 (329)
T ss_pred cCcccCCCCccccccchhhHHHHHHhCCCeEEEEEEECCCC-----------------------CHHHH----------H
Confidence 45555556777777764 3689999999998885433210 00110 0
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeecc
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
...+=++++.++|++.||-.+|++|.
T Consensus 141 ~k~a~vervg~eC~a~dipf~lE~l~ 166 (329)
T PRK04161 141 QKQAYIERIGSECTAEDIPFFLELLT 166 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 11245778888899999999999985
No 346
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.65 E-value=2.2e+02 Score=27.39 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHH
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 169 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i 169 (523)
..++...+.|+.|++.|++|.+-+......+ +.. + . -.+++
T Consensus 111 ~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~---~~~-----------------------------~----~---~~~~~ 151 (274)
T cd07938 111 ESLERFEPVAELAKAAGLRVRGYVSTAFGCP---YEG-----------------------------E----V---PPERV 151 (274)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEEeEecCC---CCC-----------------------------C----C---CHHHH
Confidence 4456678889999999999888776654443 110 0 0 13577
Q ss_pred HHHHHHHHHhccccEEEEc-ccccc
Q 009902 170 LDSLRHWVVEYHVDGFRFD-LASVL 193 (523)
Q Consensus 170 ~~~~~~w~~~~gvDGfR~D-~~~~~ 193 (523)
.+.++... +.|+|.+++- +++.+
T Consensus 152 ~~~~~~~~-~~Ga~~i~l~DT~G~~ 175 (274)
T cd07938 152 AEVAERLL-DLGCDEISLGDTIGVA 175 (274)
T ss_pred HHHHHHHH-HcCCCEEEECCCCCcc
Confidence 78888877 7999999985 55554
No 347
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.50 E-value=2.4e+02 Score=24.84 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 009902 93 WEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~Vil 111 (523)
.++.++++.|+++|++||.
T Consensus 89 ~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 89 SSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 8999999999999999864
No 348
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.17 E-value=1.8e+02 Score=26.54 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=48.0
Q ss_pred hHHhcchHHHHcCCC-EEEECCCcccchhhhhhcCCCCCCCCCcc-CCCcCcCCCCCCCCCCCCCCCC--chHHHHHHHH
Q 009902 24 GLIQKIPHLLELGIN-AVELLPVFEFDEMEFQRRRNPRDHMVNTW-GYSTINFFSPMSRYAAGGGGPL--KASWEFKEMV 99 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~-~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~-gY~~~d~~~vd~~~Gt~~~~~~--~~~~dl~~Lv 99 (523)
.+.+.|.+|++.|+. .|.|.|-.+..... .+- --+..-...++|-||...-.|+ +++++++++.
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~~~~~------------~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~ 160 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPVEELE------------PYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLI 160 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-GGGGT------------TTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCchHHH------------HHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHH
Confidence 345568999999999 48888854431100 000 1123345678998887644333 6677788877
Q ss_pred HHHHHCCCEEEEeeccc
Q 009902 100 KALHGAGIEVILDVVYN 116 (523)
Q Consensus 100 ~~aH~~Gi~VilD~V~n 116 (523)
.+.. .++.+.+|.=+|
T Consensus 161 ~~~~-~~~~I~vDGGI~ 176 (201)
T PF00834_consen 161 PENG-LDFEIEVDGGIN 176 (201)
T ss_dssp HHHT-CGSEEEEESSES
T ss_pred HhcC-CceEEEEECCCC
Confidence 7655 789999997654
No 349
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=23.17 E-value=93 Score=29.60 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCEEEEee
Q 009902 93 WEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
++|++|++.||..||.+++++
T Consensus 145 ~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 145 DQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEE
Confidence 789999999999999999998
No 350
>PLN02757 sirohydrochlorine ferrochelatase
Probab=23.05 E-value=1.7e+02 Score=25.44 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=17.8
Q ss_pred HHhcchHHHHcCCCEEEECCCccc
Q 009902 25 LIQKIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 25 l~~~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
+.+.|+.+.+.|++.|-+.|.|=+
T Consensus 60 l~eal~~l~~~g~~~vvVvP~FL~ 83 (154)
T PLN02757 60 IKDAFGRCVEQGASRVIVSPFFLS 83 (154)
T ss_pred HHHHHHHHHHCCCCEEEEEEhhhc
Confidence 444556666778888888888876
No 351
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=22.93 E-value=83 Score=32.62 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHCCCEEEEeec
Q 009902 94 EFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 94 dl~~Lv~~aH~~Gi~VilD~V 114 (523)
=...+|+.||..||++|.+.|
T Consensus 459 I~~hII~MAk~L~L~iVaEGV 479 (524)
T COG4943 459 IAPHIIEMAKSLGLKIVAEGV 479 (524)
T ss_pred hHHHHHHHHHHcCCcEEeecc
Confidence 578899999999999999988
No 352
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=22.92 E-value=86 Score=29.93 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeecc
Q 009902 75 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 75 ~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+-+|..||+. .|-+.+.+-||+.|+-++|-..+
T Consensus 163 Th~Dg~YGNl--------~Dakkva~ic~e~gvPlllN~AY 195 (382)
T COG1103 163 THVDGEYGNL--------ADAKKVAKICREYGVPLLLNCAY 195 (382)
T ss_pred eccCCCcCCc--------hhhHHHHHHHHHcCCceEeecce
Confidence 4589999997 99999999999999999987654
No 353
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.77 E-value=2e+02 Score=28.62 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=50.0
Q ss_pred CCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 17 EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 17 ~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
.|.||+.-..+-++-.++.|+++|=+--.... .......+.........| ...+++.+-.++... .++++
T Consensus 10 NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-------~e~~~ 79 (329)
T TIGR03569 10 NHNGSLELAKKLVDAAAEAGADAVKFQTFKAE-DLVSKNAPKAEYQKINTG--AEESQLEMLKKLELS-------EEDHR 79 (329)
T ss_pred CccCcHHHHHHHHHHHHHhCCCEEEeeeCCHH-HhhCcccccccccccCCc--CCCcHHHHHHHhCCC-------HHHHH
Confidence 46699999999999999999999876642111 100000000000000011 112223333334433 48999
Q ss_pred HHHHHHHHCCCEEEEee
Q 009902 97 EMVKALHGAGIEVILDV 113 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~ 113 (523)
+|.+.|++.||.++-..
T Consensus 80 ~L~~~~~~~Gi~~~stp 96 (329)
T TIGR03569 80 ELKEYCESKGIEFLSTP 96 (329)
T ss_pred HHHHHHHHhCCcEEEEe
Confidence 99999999999887543
No 354
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=22.77 E-value=1.6e+02 Score=23.27 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=8.7
Q ss_pred HHHcCCCEEEECC
Q 009902 32 LLELGINAVELLP 44 (523)
Q Consensus 32 l~~lGv~~I~L~P 44 (523)
++.||++.+.|..
T Consensus 41 l~~lg~~~~~~n~ 53 (104)
T PF02879_consen 41 LERLGCDVIELNC 53 (104)
T ss_dssp HHHTTCEEEEESS
T ss_pred HHHcCCcEEEEec
Confidence 5667887777554
No 355
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=22.72 E-value=69 Score=32.33 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHCCCEEEEeecc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
.+++++++.||++|+.||+|-.+
T Consensus 142 ~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 142 VDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred cCHHHHHHHHHHcCCEEEEECCC
Confidence 78999999999999999999874
No 356
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.64 E-value=1.4e+02 Score=28.60 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEeec
Q 009902 92 SWEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
++.|+++++.|.+.||+|.+..+
T Consensus 132 ~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 132 REGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeC
Confidence 36789999999999999999954
No 357
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=22.40 E-value=1.4e+02 Score=30.97 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=46.5
Q ss_pred HhHHhcchHHHHcCCCEEEECCCccc-chhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 009902 23 LGLIQKIPHLLELGINAVELLPVFEF-DEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 101 (523)
Q Consensus 23 ~gl~~~Ldyl~~lGv~~I~L~Pi~~~-~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~ 101 (523)
+.|.+-|+--+.+|++.+-+. |+.- +...+ .|| ..-|++ .+-+..+++.
T Consensus 26 ~ei~~dle~a~~vg~k~lR~f-iLDgEdc~d~-------------~G~---------~na~s~-------~~y~~~fla~ 75 (587)
T COG3934 26 REIKADLEPAGFVGVKDLRLF-ILDGEDCRDK-------------EGY---------RNAGSN-------VWYAAWFLAP 75 (587)
T ss_pred hhhhcccccccCccceeEEEE-EecCcchhhh-------------hce---------eccccc-------HHHHHHHhhh
Confidence 344555667778899988877 6552 00000 011 122442 3778999999
Q ss_pred HHHCCCEEEEeeccc--cccC
Q 009902 102 LHGAGIEVILDVVYN--HTNE 120 (523)
Q Consensus 102 aH~~Gi~VilD~V~n--H~~~ 120 (523)
|...+|||++=++.+ |++.
T Consensus 76 a~~l~lkvlitlivg~~hmgg 96 (587)
T COG3934 76 AGYLDLKVLITLIVGLKHMGG 96 (587)
T ss_pred cccCcceEEEEEeecccccCc
Confidence 999999999999999 9997
No 358
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.30 E-value=61 Score=26.01 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.3
Q ss_pred HHhcchHHHHcCCCEEEECCCccc
Q 009902 25 LIQKIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 25 l~~~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
+.+-++.++..|++.|+|.|++-.
T Consensus 44 i~~~l~~l~~~G~~~i~lvPl~L~ 67 (103)
T cd03413 44 LDDVLAKLKKAGIKKVTLMPLMLV 67 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEehhhe
Confidence 455567789999999999999987
No 359
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=22.28 E-value=2.2e+02 Score=28.83 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCEEEEeecc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+...+-++.+++.|++|.+-+|+
T Consensus 141 ~~~~~~i~~l~~~g~~v~i~~vv 163 (378)
T PRK05301 141 AKKLAVARLVKAHGYPLTLNAVI 163 (378)
T ss_pred HHHHHHHHHHHHCCCceEEEEEe
Confidence 55666678888999988777665
No 360
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=22.27 E-value=47 Score=32.70 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCEEEEeeccc
Q 009902 96 KEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 96 ~~Lv~~aH~~Gi~VilD~V~n 116 (523)
...|++||++|++|+==+.+.
T Consensus 45 ~~widaAHrnGV~vLGTiife 65 (311)
T PF03644_consen 45 AGWIDAAHRNGVKVLGTIIFE 65 (311)
T ss_dssp HHHHHHHHHTT--EEEEEEEE
T ss_pred chhHHHHHhcCceEEEEEEec
Confidence 346899999999998777663
No 361
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.26 E-value=1.1e+02 Score=25.08 Aligned_cols=70 Identities=20% Similarity=0.041 Sum_probs=40.4
Q ss_pred ccHHhHHhcc-hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHH
Q 009902 20 GSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 20 Gd~~gl~~~L-dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~L 98 (523)
|.-..+...+ .+++.+|..+..+........... .-...|..-+=+.-|.. .++.++
T Consensus 22 g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~i~iS~~g~~--------~~~~~~ 79 (139)
T cd05013 22 GSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAA--------------NLTPGDVVIAISFSGET--------KETVEA 79 (139)
T ss_pred CchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHH--------------cCCCCCEEEEEeCCCCC--------HHHHHH
Confidence 4444555544 567778886666544322200000 01122333333555776 889999
Q ss_pred HHHHHHCCCEEEE
Q 009902 99 VKALHGAGIEVIL 111 (523)
Q Consensus 99 v~~aH~~Gi~Vil 111 (523)
++.|+++|+++|+
T Consensus 80 ~~~a~~~g~~iv~ 92 (139)
T cd05013 80 AEIAKERGAKVIA 92 (139)
T ss_pred HHHHHHcCCeEEE
Confidence 9999999999854
No 362
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=22.17 E-value=2.2e+02 Score=28.37 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+=|++|.+.|+++|+-+|+|=|..-.+.
T Consensus 198 ~~l~~l~~lc~~~gillI~DEV~tG~gR 225 (339)
T PF00202_consen 198 EYLRELRELCREHGILLIADEVQTGFGR 225 (339)
T ss_dssp THHHHHHHHHHHTT-EEEEEETTTTTTT
T ss_pred chhhehcccccccccceecccccccccc
Confidence 6689999999999999999999877766
No 363
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.15 E-value=1.1e+02 Score=25.09 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 009902 79 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 79 ~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~Vil 111 (523)
+.-|.. .+..+.++.|+++|.+||.
T Consensus 54 S~sG~t--------~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 54 SQSGET--------ADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred eCCcCC--------HHHHHHHHHHHHcCCeEEE
Confidence 455776 8999999999999999875
No 364
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.08 E-value=2.2e+02 Score=28.30 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=46.5
Q ss_pred CCCccHHhHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 17 EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 17 ~~~Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
.|.||+.-..+-++-.++.|.++|=+-- +..........+-+.. .....|.....+..-..+- ...++++
T Consensus 11 NH~G~~~~A~~lI~~A~~aGAdavKFQ~-~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e-------l~~e~~~ 80 (327)
T TIGR03586 11 NHNGSLERALAMIEAAKAAGADAIKLQT-YTPDTITLDSDRPEFI--IKGGLWDGRTLYDLYQEAH-------TPWEWHK 80 (327)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEeee-ccHHHhhccccccccc--cccCCcCCccHHHHHHHhh-------CCHHHHH
Confidence 4669999999999999999999875543 2211100000000000 0000111111111111111 1138889
Q ss_pred HHHHHHHHCCCEEEEee
Q 009902 97 EMVKALHGAGIEVILDV 113 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~ 113 (523)
+|.+.|++.||.++-.+
T Consensus 81 ~L~~~~~~~Gi~~~stp 97 (327)
T TIGR03586 81 ELFERAKELGLTIFSSP 97 (327)
T ss_pred HHHHHHHHhCCcEEEcc
Confidence 99999999999988654
No 365
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=21.99 E-value=2e+02 Score=29.16 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+++++|++.|+++|+-||.|-++.+...
T Consensus 192 ~~~~~l~~~a~~~~~~ii~De~Y~~l~~ 219 (396)
T PRK09257 192 EQWDELAELLKERGLIPFLDIAYQGFGD 219 (396)
T ss_pred HHHHHHHHHHHhCCcEEEEecccccccc
Confidence 9999999999999999999999877653
No 366
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=21.94 E-value=76 Score=32.45 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeec
Q 009902 74 FFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 74 ~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
...+...-|.. .+++++++.||++|+.|++|.+
T Consensus 177 ~~~v~~~tG~~--------~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 177 LSGVQYYTGQL--------FDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred Eecccccccee--------cCHHHHHHHHHHcCCEEEEEcc
Confidence 34466667776 8899999999999999999986
No 367
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.85 E-value=1.4e+02 Score=27.11 Aligned_cols=81 Identities=14% Similarity=0.263 Sum_probs=54.5
Q ss_pred CCccHHhHHhcchHHHHcCCCE-EEE----CCCcccchhhhhh-cCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCch
Q 009902 18 IRGSYLGLIQKIPHLLELGINA-VEL----LPVFEFDEMEFQR-RRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKA 91 (523)
Q Consensus 18 ~~Gd~~gl~~~Ldyl~~lGv~~-I~L----~Pi~~~~~~~~~~-~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~ 91 (523)
.+-+|..+++.+.....-|+++ |.| +||+.++...... ... .+-+|+-+.|. .
T Consensus 75 ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~-----aGanGfiivDl--------P-------- 133 (268)
T KOG4175|consen 75 NGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKN-----AGANGFIIVDL--------P-------- 133 (268)
T ss_pred cCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHh-----cCCCceEeccC--------C--------
Confidence 4567888888888888999997 333 4666654332211 111 23446666664 1
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH~~ 119 (523)
.||-..|.++|+++||.+|.=+.+..+.
T Consensus 134 pEEa~~~Rne~~k~gislvpLvaPsTtd 161 (268)
T KOG4175|consen 134 PEEAETLRNEARKHGISLVPLVAPSTTD 161 (268)
T ss_pred hHHHHHHHHHHHhcCceEEEeeCCCChH
Confidence 2889999999999999999877665444
No 368
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=21.85 E-value=1.7e+02 Score=28.57 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=45.0
Q ss_pred ccHHhHHhcchHHHHcCCCE-EEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINA-VELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 98 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~-I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~L 98 (523)
-....=++.|..|++.|+.+ |++.||.+. + +. +++.++
T Consensus 166 psp~~Ri~al~~l~eaGi~~~v~v~PIiP~--------------------------------~-~d--------~e~e~~ 204 (297)
T COG1533 166 PSPEERLEALKELSEAGIPVGLFVAPIIPG--------------------------------L-ND--------EELERI 204 (297)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEEecccCC--------------------------------C-Ch--------HHHHHH
Confidence 33455555678889999975 899999875 1 22 889999
Q ss_pred HHHHHHCCCEEEEeecccccc
Q 009902 99 VKALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 99 v~~aH~~Gi~VilD~V~nH~~ 119 (523)
+.+|.+.|.+.+.+.++.-..
T Consensus 205 l~~~~~ag~~~v~~~~l~~~~ 225 (297)
T COG1533 205 LEAAAEAGARVVVYGTLRLRL 225 (297)
T ss_pred HHHHHHcCCCeeEeeeeeccH
Confidence 999999999999888764433
No 369
>PLN02161 beta-amylase
Probab=21.82 E-value=9.7e+02 Score=25.36 Aligned_cols=65 Identities=14% Similarity=0.289 Sum_probs=45.8
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECC---CcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLP---VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~P---i~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
-+.+.|...|..||.+||+.|-+-= |.|. .+| .-| .. .-.+
T Consensus 114 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~--------~~p------------~~Y--------dW--------sgY~ 157 (531)
T PLN02161 114 KRLKALTVSLKALKLAGVHGIAVEVWWGIVER--------FSP------------LEF--------KW--------SLYE 157 (531)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeeeeeec--------CCC------------CcC--------Cc--------HHHH
Confidence 6678899999999999999986532 2221 111 111 12 6688
Q ss_pred HHHHHHHHCCCEEEEeeccccccC
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+|++.+++.|+||..=+-+.-++.
T Consensus 158 ~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 158 ELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred HHHHHHHHcCCeEEEEEEecccCC
Confidence 889999999999988888765443
No 370
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=21.78 E-value=4.1e+02 Score=25.80 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccccEEEEc-cc-----cccccCCCCCCCCChHHHHHHHhcccccCCeEeccc
Q 009902 169 ILDSLRHWVVEYHVDGFRFD-LA-----SVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEP 226 (523)
Q Consensus 169 i~~~~~~w~~~~gvDGfR~D-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~ 226 (523)
+...++.++ +.||.|+-+. .+ .|+.....-...++...|+........++++++|..
T Consensus 90 v~~tv~~~~-~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 90 VARTVREME-DAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred HHHHHHHHH-HcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 446677778 7999999994 43 122110000001122334444443335678888763
No 371
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=21.75 E-value=87 Score=30.95 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHCCCEEEEeecc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
.+++++++.||++|+.||+|-+.
T Consensus 149 ~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 149 APLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred cCHHHHHHHHHHcCCEEEEEccc
Confidence 77899999999999999999984
No 372
>PLN02801 beta-amylase
Probab=21.74 E-value=9.6e+02 Score=25.33 Aligned_cols=66 Identities=14% Similarity=0.297 Sum_probs=46.4
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECC---CcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHH
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLP---VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFK 96 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~P---i~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~ 96 (523)
-+-++|...|..||.+||+.|-+-= |.|. .+| .-| .. .-.+
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~--------~~P------------~~Y--------dW--------sgY~ 77 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVES--------KGP------------KQY--------DW--------SAYR 77 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeeeeecc--------CCC------------Ccc--------Cc--------HHHH
Confidence 4567899999999999999986532 2221 111 111 12 6788
Q ss_pred HHHHHHHHCCCEEEEeeccccccCC
Q 009902 97 EMVKALHGAGIEVILDVVYNHTNEA 121 (523)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~nH~~~~ 121 (523)
+|++.+++.|+||..=+-+.-++.+
T Consensus 78 ~l~~mvr~~GLKlq~vmSFHqCGGN 102 (517)
T PLN02801 78 SLFELVQSFGLKIQAIMSFHQCGGN 102 (517)
T ss_pred HHHHHHHHcCCeEEEEEEecccCCC
Confidence 9999999999999888888666553
No 373
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.65 E-value=94 Score=29.82 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
++.|++|++.|.+.||+|.+.-+.+.
T Consensus 122 ~~~l~~l~~~a~~~gi~l~lEn~~~~ 147 (279)
T cd00019 122 IEALNELIDKAETKGVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 47789999999999999999987654
No 374
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=21.53 E-value=38 Score=34.76 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCEEEEeec
Q 009902 93 WEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
.|++++++.||++|+.|++|-.
T Consensus 184 ~di~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 184 YDIKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp E-HHHHHHHHCCTECEEEEE-T
T ss_pred ECHHHHHHHhcccCCEEEEEcc
Confidence 8899999999999999999975
No 375
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=21.51 E-value=1e+02 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=19.9
Q ss_pred HHHHHHHHHHCCCEEEEeecccccc
Q 009902 95 FKEMVKALHGAGIEVILDVVYNHTN 119 (523)
Q Consensus 95 l~~Lv~~aH~~Gi~VilD~V~nH~~ 119 (523)
+++|++...+.||++++||=.+-.|
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S 26 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRS 26 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCC
Confidence 5778889999999999998654433
No 376
>PRK08636 aspartate aminotransferase; Provisional
Probab=21.49 E-value=1.6e+02 Score=29.96 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+++++|++.|+++++-||.|=++.....
T Consensus 195 ~~~~~l~~~a~~~~~~II~De~Y~~l~~ 222 (403)
T PRK08636 195 SFYERLVALAKKERFYIISDIAYADITF 222 (403)
T ss_pred HHHHHHHHHHHHcCcEEEEeccchhhcc
Confidence 9999999999999999999999876653
No 377
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.46 E-value=2.2e+02 Score=27.23 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
.++.++++++|.++||..|+=+.++.
T Consensus 128 ~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 128 PEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 38999999999999999995454443
No 378
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.43 E-value=1.2e+02 Score=25.48 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHH
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 171 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~ 171 (523)
-+||+-|++.|++.|+.|++=++|=+- .|| ++.| -+.+.|+...+
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~PvNg-------------------~wy---------dytG-------~~~~~r~~~y~ 79 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPVNG-------------------KWY---------DYTG-------LSKEMRQEYYK 79 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE----H-------------------HHH---------HHTT---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCcH-------------------HHH---------HHhC-------CCHHHHHHHHH
Confidence 478999999999999999987765211 121 1121 13788999999
Q ss_pred HHHHHHHhccc
Q 009902 172 SLRHWVVEYHV 182 (523)
Q Consensus 172 ~~~~w~~~~gv 182 (523)
-++.-++++|+
T Consensus 80 kI~~~~~~~gf 90 (130)
T PF04914_consen 80 KIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHTTT-
T ss_pred HHHHHHHHCCC
Confidence 99999988888
No 379
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=21.40 E-value=80 Score=32.00 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=67.6
Q ss_pred ccHHhHHhcchHHHHcCCCEEEECCCcccchhhhh--h------cCCCCCCCCCccCCCcCcCCCCCCCCCCC-------
Q 009902 20 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQ--R------RRNPRDHMVNTWGYSTINFFSPMSRYAAG------- 84 (523)
Q Consensus 20 Gd~~gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~--~------~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~------- 84 (523)
|-..+|-..+--+-+-|.+.|-+-|.|..-....+ | ...+..+ ..+..-++.|+..++..+-.+
T Consensus 101 GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g-~~~s~~~~~D~~~le~~~t~kTk~Ii~n 179 (420)
T KOG0257|consen 101 GANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEG-NVSSSDWTLDPEELESKITEKTKAIILN 179 (420)
T ss_pred CchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccc-cccCccccCChHHHHhhccCCccEEEEe
Confidence 66677777777788889999999998886221110 0 0001110 022233455555444433211
Q ss_pred -CCCCC---chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcc
Q 009902 85 -GGGPL---KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 128 (523)
Q Consensus 85 -~~~~~---~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~ 128 (523)
|.+|. -..++|+++++-|.++|+=||.|=|+.|...++.+|+-+
T Consensus 180 tPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~ 227 (420)
T KOG0257|consen 180 TPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRI 227 (420)
T ss_pred CCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceee
Confidence 11222 335999999999999999999999999998866666654
No 380
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=21.40 E-value=63 Score=24.37 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.6
Q ss_pred cchHHHHcCCCEEEECCCccc
Q 009902 28 KIPHLLELGINAVELLPVFEF 48 (523)
Q Consensus 28 ~Ldyl~~lGv~~I~L~Pi~~~ 48 (523)
-++.+|++|+..|+-+|+--.
T Consensus 29 ~~~~~~~~G~~~V~yLPLAa~ 49 (79)
T PF12996_consen 29 FVEEYRNLGAENVFYLPLAAN 49 (79)
T ss_pred HHHHHHHcCCCCEEEccccCC
Confidence 378999999999999998776
No 381
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.31 E-value=1.5e+02 Score=28.34 Aligned_cols=53 Identities=19% Similarity=0.057 Sum_probs=36.1
Q ss_pred hHHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCC-CCCCCCCchHHHHHHHHHHH
Q 009902 24 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYA-AGGGGPLKASWEFKEMVKAL 102 (523)
Q Consensus 24 gl~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~~~~~dl~~Lv~~a 102 (523)
.+.+.++-++++|+++|.|.+-- . +.+ +. .++ +. ++++++.+.+
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~-~------------------~~~-------~~-~~~~~~--------~~~~~l~~~l 66 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDE-S------------------DER-------LA-RLDWSR--------EQRLALVNAL 66 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCc-c------------------ccc-------hh-ccCCCH--------HHHHHHHHHH
Confidence 45677889999999999996411 1 010 00 011 22 7799999999
Q ss_pred HHCCCEEEE
Q 009902 103 HGAGIEVIL 111 (523)
Q Consensus 103 H~~Gi~Vil 111 (523)
.+.||+|..
T Consensus 67 ~~~gl~i~~ 75 (283)
T PRK13209 67 VETGFRVNS 75 (283)
T ss_pred HHcCCceeE
Confidence 999999863
No 382
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=21.15 E-value=77 Score=29.16 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=40.9
Q ss_pred HHhcchHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 009902 25 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 104 (523)
Q Consensus 25 l~~~Ldyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~ 104 (523)
+.+.|..|+++||.. +|.-+-.. ........+-..|+-.+|..+=.... ......-++.+++.||+
T Consensus 136 ~~~~l~~l~~~G~~i-~ld~~g~~------------~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~ 201 (236)
T PF00563_consen 136 LLENLRRLRSLGFRI-ALDDFGSG------------SSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKS 201 (236)
T ss_dssp HHHHHHHHHHCT-EE-EEEEETST------------CGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcee-EeeeccCC------------cchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhc
Confidence 446778889999865 33322100 00001111223345555555432211 22234668899999999
Q ss_pred CCCEEEEeecc
Q 009902 105 AGIEVILDVVY 115 (523)
Q Consensus 105 ~Gi~VilD~V~ 115 (523)
.|++||++-|=
T Consensus 202 ~~~~via~gVe 212 (236)
T PF00563_consen 202 LGIKVIAEGVE 212 (236)
T ss_dssp TT-EEEEECE-
T ss_pred cccccceeecC
Confidence 99999999883
No 383
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.15 E-value=1.1e+02 Score=28.93 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCEEEEeec
Q 009902 93 WEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
+.|+++++.|.+.||++.+.-.
T Consensus 123 ~~l~~l~~~A~~~gi~l~lE~~ 144 (254)
T TIGR03234 123 ENLRYAADALDRIGLTLLIEPI 144 (254)
T ss_pred HHHHHHHHHHHhcCCEEEEEEC
Confidence 6699999999999999999853
No 384
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.13 E-value=1.4e+02 Score=29.42 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCCCCCCCccHHhHHhcc--hHHHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCC
Q 009902 12 SGLDPEIRGSYLGLIQKI--PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPL 89 (523)
Q Consensus 12 ~g~~~~~~Gd~~gl~~~L--dyl~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~ 89 (523)
.|++....|.+..++... .+||++|.++|=++=-+.... --.|+ .
T Consensus 92 tGyD~~~~gRl~~ll~~wS~~rike~GadavK~Llyy~pD~-----------------------~~~in----------~ 138 (324)
T PRK12399 92 TGYDATTTGRLPDCLDDWSAKRIKEEGADAVKFLLYYDVDE-----------------------PDEIN----------E 138 (324)
T ss_pred hCCccCCCCCcccccchhhHHHHHHhCCCeEEEEEEECCCC-----------------------CHHHH----------H
Confidence 455555567766666653 589999999998885443210 00110 0
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeecc
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
...+=++++.++|++.||-.+|++|.
T Consensus 139 ~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 139 QKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 11245778888899999999999986
No 385
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=21.11 E-value=3.6e+02 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHHHHHCCCEEEEeec
Q 009902 88 PLKASWEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 88 ~~~~~~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
.++.++.++++|+.|+++|++|.+.+.
T Consensus 107 ~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 107 ITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 345567788899999999998887763
No 386
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=21.10 E-value=86 Score=30.84 Aligned_cols=23 Identities=22% Similarity=0.201 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEeec
Q 009902 92 SWEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
.++++++++.||++|+-||+|-.
T Consensus 145 ~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 145 LDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred HHHHHHHHHHHHHcCCeEeechH
Confidence 48999999999999999999964
No 387
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=21.07 E-value=61 Score=32.59 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeec
Q 009902 68 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 114 (523)
Q Consensus 68 gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V 114 (523)
.....-+..++..-|.. .+++++.+.||++|.-+++|.+
T Consensus 139 ~~~lv~~~~~~~~tG~~--------~pi~~I~~~~~~~~~~~~vD~~ 177 (371)
T PF00266_consen 139 DTRLVSISHVENSTGVR--------NPIEEIAKLAHEYGALLVVDAA 177 (371)
T ss_dssp TESEEEEESBETTTTBB--------SSHHHHHHHHHHTTSEEEEE-T
T ss_pred ccceEEeecccccccEE--------eeeceehhhhhccCCceeEech
Confidence 34556667788888887 8899999999999999999997
No 388
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=21.07 E-value=79 Score=32.46 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEeeccc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
+.+++++++.||++|+.||+|-++-
T Consensus 161 v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 161 ITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred cCCHHHHHHHHHHcCCEEEEECCCc
Confidence 4889999999999999999999863
No 389
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=21.06 E-value=93 Score=31.48 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
-.+-+|+++|+++|+.||++. |.|+..
T Consensus 242 ~~lgeL~~rA~e~gVQvMVEG-PGHVPl 268 (420)
T PF01964_consen 242 IILGELVKRAREAGVQVMVEG-PGHVPL 268 (420)
T ss_dssp HHHHHHHHHHHHTT--EEEEE--SB--G
T ss_pred HHHHHHHHHHHHCCCeEEeeC-CCCCCH
Confidence 346788999999999999999 888876
No 390
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.01 E-value=1.4e+02 Score=30.57 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEeeccccccCCC
Q 009902 91 ASWEFKEMVKALHGAGIEVILDVVYNHTNEAD 122 (523)
Q Consensus 91 ~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~ 122 (523)
..++|+++++-|.++|+-||.|-|+.+...++
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 35999999999999999999999999998844
No 391
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=20.92 E-value=1.2e+02 Score=31.50 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
-..++++++++.|+++|+-||.|-++.|...
T Consensus 207 ~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~ 237 (430)
T PLN00145 207 YSYEHLAKIAETARKLGILVIADEVYDHLTF 237 (430)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence 3458899999999999999999999988764
No 392
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.74 E-value=79 Score=32.07 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+.+++++++.||++|+.||+|-..
T Consensus 147 v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 147 IVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred eecHHHHHHHHHHcCCEEEEECCC
Confidence 378999999999999999999873
No 393
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.73 E-value=1.2e+02 Score=32.09 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCEEEEeecccc
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNH 117 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH 117 (523)
++..+.++.+++.||.+.++++++.
T Consensus 323 ~~~~~ai~~l~~~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 323 STNKEAIRLLRQHNILSEAQFITGF 347 (497)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEEEC
Confidence 8899999999999999999998753
No 394
>PLN02808 alpha-galactosidase
Probab=20.73 E-value=6.7e+02 Score=25.55 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=55.4
Q ss_pred HHHcCCCEEEECCCcccchhhhhhcCCCCCCCCCccCCCcCcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 009902 32 LLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 32 l~~lGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~Vil 111 (523)
|+++|++.|.|=--+.... . ...|..+.|- .+|-+ -|+.|++.+|++|||.=+
T Consensus 63 l~~~Gy~yv~iDd~W~~~~---------r----d~~G~~~~d~----~rFP~----------G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 63 LAALGYKYINLDDCWAELK---------R----DSQGNLVPKA----STFPS----------GIKALADYVHSKGLKLGI 115 (386)
T ss_pred hHHhCCEEEEEcCCcCCCC---------c----CCCCCEeeCh----hhcCc----------cHHHHHHHHHHCCCceEE
Confidence 7999999998855443300 0 1113322222 24543 499999999999999765
Q ss_pred eeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEcccc
Q 009902 112 DVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 191 (523)
Q Consensus 112 D~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i~~~~~~w~~~~gvDGfR~D~~~ 191 (523)
=......... ...|-...+...-++.+. +.|||-+-+|...
T Consensus 116 y~~~G~~tC~--------------------------------------~~~pGs~~~e~~DA~~fA-~WGvDylK~D~C~ 156 (386)
T PLN02808 116 YSDAGTLTCS--------------------------------------KTMPGSLGHEEQDAKTFA-SWGIDYLKYDNCE 156 (386)
T ss_pred EecCCccccC--------------------------------------CCCCcchHHHHHHHHHHH-HhCCCEEeecCcC
Confidence 3322111110 001222344555567777 8999999999664
No 395
>PRK08960 hypothetical protein; Provisional
Probab=20.72 E-value=1.2e+02 Score=30.66 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
-..+++++|++.||++|+-||+|-++.+...
T Consensus 182 ~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~ 212 (387)
T PRK08960 182 LSRDELAALSQALRARGGHLVVDEIYHGLTY 212 (387)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 3358999999999999999999999876543
No 396
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.50 E-value=1.3e+02 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.008 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 009902 77 PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 77 vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~Vil 111 (523)
+=+.-|.. .+..+.++.|+++|++||.
T Consensus 53 ~iS~SG~t--------~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 53 LASHSGNT--------KETVAAAKFAKEKGATVIG 79 (120)
T ss_pred EEeCCCCC--------hHHHHHHHHHHHcCCeEEE
Confidence 33555777 9999999999999999887
No 397
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.40 E-value=2.2e+02 Score=25.27 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHhHHhcchHHHHcCCCEEEECCCc
Q 009902 22 YLGLIQKIPHLLELGINAVELLPVF 46 (523)
Q Consensus 22 ~~gl~~~Ldyl~~lGv~~I~L~Pi~ 46 (523)
.+..++...+.+++|+++|-+.|.+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccH
Confidence 7888889999999999999998754
No 398
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=20.38 E-value=1.7e+02 Score=30.99 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhccccEEEEcccccc
Q 009902 163 PVVMELILDSLRHWVVEYHVDGFRFDLASVL 193 (523)
Q Consensus 163 p~v~~~i~~~~~~w~~~~gvDGfR~D~~~~~ 193 (523)
++..+...+.+..+++.|.--|+.|+++.--
T Consensus 200 ~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~Q 230 (496)
T PF02055_consen 200 DEYYQAYADYFVKFIQAYKKEGIPIWAITPQ 230 (496)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTT--ESEEESS
T ss_pred chhHHHHHHHHHHHHHHHHHCCCCeEEEecc
Confidence 4667777888888888888888899877543
No 399
>PLN02624 ornithine-delta-aminotransferase
Probab=20.33 E-value=2.3e+02 Score=29.71 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccccccC
Q 009902 93 WEFKEMVKALHGAGIEVILDVVYNHTNE 120 (523)
Q Consensus 93 ~dl~~Lv~~aH~~Gi~VilD~V~nH~~~ 120 (523)
+-|++|.+.|+++|+-+|+|-|....+.
T Consensus 245 ~~L~~l~~lc~~~gillI~DEv~tG~Gr 272 (474)
T PLN02624 245 GYLKAVRELCSKHNVLMIADEIQTGLAR 272 (474)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCcCc
Confidence 4599999999999999999999754444
No 400
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.32 E-value=1.1e+02 Score=25.83 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=21.5
Q ss_pred cCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 009902 73 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 111 (523)
Q Consensus 73 d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~Vil 111 (523)
|..-+=+.-|.. .-.-+.++.|+++||+||.
T Consensus 105 Dvli~iS~SG~s--------~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 105 DVLIVISNSGNS--------PNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp -EEEEEESSS-S--------HHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEECCCCCC--------HHHHHHHHHHHHCCCEEEE
Confidence 333444556776 7788999999999999984
No 401
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.28 E-value=3.9e+02 Score=24.74 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHCCCEEEEeeccccccCCCCCCCcccccCCCCCCcCeeeCCCCCccccCCcCCcCCCCCHHHHHHH
Q 009902 90 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 169 (523)
Q Consensus 90 ~~~~dl~~Lv~~aH~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~i 169 (523)
+.++.++++++.|+++|+.|.+-+ -+.+. .. .+++
T Consensus 105 ~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~----------------------------------------~~---~~~~ 139 (237)
T PF00682_consen 105 EALERIEEAVKYAKELGYEVAFGC--EDASR----------------------------------------TD---PEEL 139 (237)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEE--TTTGG----------------------------------------SS---HHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEeCc--ccccc----------------------------------------cc---HHHH
Confidence 335789999999999999993222 11111 00 2467
Q ss_pred HHHHHHHHHhccccEEEEc-ccccc
Q 009902 170 LDSLRHWVVEYHVDGFRFD-LASVL 193 (523)
Q Consensus 170 ~~~~~~w~~~~gvDGfR~D-~~~~~ 193 (523)
.+.++... ++|+|.+++- +++.+
T Consensus 140 ~~~~~~~~-~~g~~~i~l~Dt~G~~ 163 (237)
T PF00682_consen 140 LELAEALA-EAGADIIYLADTVGIM 163 (237)
T ss_dssp HHHHHHHH-HHT-SEEEEEETTS-S
T ss_pred HHHHHHHH-HcCCeEEEeeCccCCc
Confidence 77777777 7899999986 66655
No 402
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=20.23 E-value=3e+02 Score=25.16 Aligned_cols=32 Identities=19% Similarity=-0.002 Sum_probs=24.3
Q ss_pred cCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEee
Q 009902 73 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 113 (523)
Q Consensus 73 d~~~vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~ 113 (523)
|+..++..-|. +.++++++.+++.|+++++=+
T Consensus 82 d~vtvh~e~g~---------~~l~~~i~~~~~~g~~~~v~~ 113 (215)
T PRK13813 82 WGIIVHGFTGR---------DSLKAVVEAAAESGGKVFVVV 113 (215)
T ss_pred CEEEEcCcCCH---------HHHHHHHHHHHhcCCeEEEEE
Confidence 44555555453 779999999999999997655
No 403
>PRK07582 cystathionine gamma-lyase; Validated
Probab=20.18 E-value=86 Score=31.64 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecc
Q 009902 92 SWEFKEMVKALHGAGIEVILDVVY 115 (523)
Q Consensus 92 ~~dl~~Lv~~aH~~Gi~VilD~V~ 115 (523)
+.+++++++.||++|+.||+|-++
T Consensus 148 v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 148 VCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred ccCHHHHHHHHHHcCCEEEEECCC
Confidence 478999999999999999999975
No 404
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=20.06 E-value=1e+02 Score=31.37 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEeeccc
Q 009902 77 PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 116 (523)
Q Consensus 77 vd~~~Gt~~~~~~~~~~dl~~Lv~~aH~~Gi~VilD~V~n 116 (523)
++...|+. .+++++++.||++|+.|++|-+.-
T Consensus 167 ~~~~tG~~--------~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 167 VDGNYGNL--------ADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCCCccc--------ccHHHHHHHHHHcCCEEEEECCcc
Confidence 44557775 889999999999999999999743
Done!