BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009903
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/443 (53%), Positives = 318/443 (71%), Gaps = 1/443 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+K+L+ANRGEIAVR+IR ++GI VA+YS DKDALH ++ADE+ C+G S SYL
Sbjct: 2 KKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLN 61
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IPN+LS A S GC +HPGYGFLAENA F E+C + FIGP+ SI+ MG K A+
Sbjct: 62 IPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE 121
Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
M A VP VPGSDGL++ EA K+A ++G+PV+IKATAGGGG+G+R+A++ E +
Sbjct: 122 MIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFR 181
Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311
+ EA AFGN G+Y+EK+++N RHIE Q++ D YGNV+H GERDC+IQRR QKL+EEA
Sbjct: 182 MTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEA 241
Query: 312 PSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTE 370
PSP L E R+ MG+ ++ Y GT+EF+ D FYFMEMNTRIQVEHPVTE
Sbjct: 242 PSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVTE 301
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
M++ +DL++ Q+ VAMG L YKQEDI L GH+IE RINAE+P+KNF P PG+I YL
Sbjct: 302 MVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLAP 361
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR++S Y +Y +PP YDS++ KLI+ PTR++AI RAL++ ++ G+ TTI +
Sbjct: 362 GGYGVRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTTIPF 421
Query: 491 HKLILDVEDFKNGKVDTAFIPKH 513
H +L+ + F++GK +T F+ ++
Sbjct: 422 HIKLLNNDIFRSGKFNTNFLEQN 444
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/442 (52%), Positives = 318/442 (71%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
EK+L+ANRGEIA+R++R E+GI VAV+ST D++ +H+ LADESVCIG AP++QSYL
Sbjct: 3 EKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSYLQ 62
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP +++AA G T +HPGYGFLAENA F E G F+GP + IR+MGDK +A++
Sbjct: 63 IPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDA 122
Query: 192 MKNAGVPTVPGSDGLLQSTEE-AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVPTVPGSDG L EE A+ +A E+G+PV+IKA GGGGRGMR+ + E +K
Sbjct: 123 MKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSA 182
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
+ ++EA AAFGN VYLEK++ NPRH+E QVL+D GN +H G+RDCS+QRR+QK++EE
Sbjct: 183 KLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVIEE 242
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P + + R+ + IGY G GT EFL E G FYF+EMNTR+QVEHPV+E
Sbjct: 243 APAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLY-ENGRFYFIEMNTRVQVEHPVSE 301
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
M++ VD+++E + +A G KL +QED+V++GH++ECRINAEDP K F P PG++ +
Sbjct: 302 MVTGVDIVKEMLRIASGEKLSIRQEDVVIRGHALECRINAEDP-KTFMPSPGKVKHFHAP 360
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR+DSH+Y Y VPP+YDSL+GK+I + R++A+ RM+ AL++ I+ G+ T E
Sbjct: 361 GGNGVRVDSHLYSGYSVPPNYDSLVGKVITYGADRDEALARMRNALDELIVDGIKTNTEL 420
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
HK ++ F G V+ ++ K
Sbjct: 421 HKDLVRDAAFCKGGVNIHYLEK 442
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 236/441 (53%), Positives = 309/441 (70%), Gaps = 1/441 (0%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
K+LVANRGEIAVR+IR E+GIP VA+Y+ ++ A HVKLADE+ IG P +YL
Sbjct: 4 KVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLD-TYLNK 62
Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
+++ A+ G +HPGYGFLAENA F +MC E GI FIGP+ I +MGDK+ ++E M
Sbjct: 63 QRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVM 122
Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
K AGVP VPGSDG+L+S EEA LA E+G+PV++KATAGGGGRG+R+ + +E VK +Q
Sbjct: 123 KKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQ 182
Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAP 312
A EA AFG + LEK+++NP+HIE+QVL DK+GNV+H GERDCSIQRRNQKL+E AP
Sbjct: 183 ASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAP 242
Query: 313 SPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMI 372
S LTPE R+ G+ IGY GT+EF+ D+ G+ YF+EMNTRIQVEHPV+EM+
Sbjct: 243 SLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVSEMV 302
Query: 373 SSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGG 432
+ +D+++ QI +A G L KQED+ G++IECRINAEDP KNF P I Y GG
Sbjct: 303 TGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYYVPGG 362
Query: 433 PFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHK 492
+R++ + V P YDS++ KLI WAPT ++A+ERM+ AL ITGV TTI
Sbjct: 363 FGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTTIPLLI 422
Query: 493 LILDVEDFKNGKVDTAFIPKH 513
I+ +DFK GK T ++ +H
Sbjct: 423 NIMKEKDFKAGKFTTKYLEEH 443
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/442 (52%), Positives = 313/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 23 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 82
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 83 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 142
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 143 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 202
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 203 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 262
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF+EMNTRIQVEHPVTE
Sbjct: 263 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRIQVEHPVTE 321
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 322 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 380
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 381 GGAGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 440
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 441 QIRIMNDENFQHGGTNIHYLEK 462
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/442 (52%), Positives = 313/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 24 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 83
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 84 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 143
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 144 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 203
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 204 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 263
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF+EMNTRIQVEHPVTE
Sbjct: 264 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRIQVEHPVTE 322
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 323 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 381
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 382 GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 441
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 442 QIRIMNDENFQHGGTNIHYLEK 463
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/442 (52%), Positives = 313/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 3 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 63 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 182
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 183 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 242
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF+EMNTRIQVEHPVTE
Sbjct: 243 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRIQVEHPVTE 301
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 302 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 360
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 361 GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 420
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 421 QIRIMNDENFQHGGTNIHYLEK 442
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/442 (52%), Positives = 313/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 6 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 65
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 66 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 125
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 126 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 185
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 186 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 245
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF+EMNTRIQVEHPVTE
Sbjct: 246 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRIQVEHPVTE 304
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 305 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 363
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 364 GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 423
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 424 QIRIMNDENFQHGGTNIHYLEK 445
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/442 (52%), Positives = 313/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 3 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 63 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 182
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 183 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 242
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF+EMNTRIQVEHPVTE
Sbjct: 243 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRIQVEHPVTE 301
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 302 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 360
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 361 GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 420
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 421 QIRIMNDENFQHGGTNIHYLEK 442
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/442 (52%), Positives = 313/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 6 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 65
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 66 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 125
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 126 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 185
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 186 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 245
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF++MNTRIQVEHPVTE
Sbjct: 246 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIKMNTRIQVEHPVTE 304
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 305 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 363
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 364 GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 423
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 424 QIRIMNDENFQHGGTNIHYLEK 445
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/442 (52%), Positives = 312/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+R++R +GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 23 DKIVIANRGEIALRILRACKRLGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 82
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 83 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 142
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 143 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 202
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 203 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 262
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF+EMNTRIQVEHPVTE
Sbjct: 263 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRIQVEHPVTE 321
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 322 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 380
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 381 GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 440
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 441 QIRIMNDENFQHGGTNIHYLEK 462
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/442 (52%), Positives = 312/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+ ++R E+GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 6 DKIVIANRGEIALEILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 65
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 66 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 125
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 126 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 185
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 186 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 245
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF+EMNTRIQVEHPVTE
Sbjct: 246 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRIQVEHPVTE 304
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 305 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 363
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 364 GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 423
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 424 QIRIMNDENFQHGGTNIHYLEK 445
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/442 (52%), Positives = 312/442 (70%), Gaps = 3/442 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCIG APS +SYL
Sbjct: 3 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
IP ++SAA G +HPGYGFL+ENA F E G FIGP ++IR+MGDK +A
Sbjct: 63 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
MK AGVP VPGSDG L ++ +A +G+PV+IKA+ GGGGRGMR+ + E + +
Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 182
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++ ERDCS+QRR+QK++EE
Sbjct: 183 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE 242
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370
AP+P +TPELR+ +G+ IGY G GT EFL E G FYF+EMNTRIQV HPVTE
Sbjct: 243 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRIQVAHPVTE 301
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
MI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP F P PG+IT +
Sbjct: 302 MITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAP 360
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK AL + II G+ T ++
Sbjct: 361 GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDL 420
Query: 491 HKLILDVEDFKNGKVDTAFIPK 512
I++ E+F++G + ++ K
Sbjct: 421 QIRIMNDENFQHGGTNIHYLEK 442
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/440 (51%), Positives = 297/440 (67%), Gaps = 2/440 (0%)
Query: 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIP 133
IL+ANRGEIA+R +RT E G + VYS DKDAL++K AD S+CIG+A SS+SYL IP
Sbjct: 9 ILIANRGEIALRALRTIKEXGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIP 68
Query: 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMK 193
+++AA + PGYGFL+EN FVE+C +H I FIGP+ ++ + DKS A++ +
Sbjct: 69 AIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAXNLXSDKSKAKQVXQ 128
Query: 194 NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQA 253
AGVP +PGSDG L E A KLA E+G+PV++KA AGGGGRG R+ + + K A
Sbjct: 129 RAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGXRVVENEKDLEKAYWSA 188
Query: 254 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPS 313
+SEA AFG+ Y EKY+QNPRHIE QV+ D +GNV+H GERDCS QRR+QKL+EE+P+
Sbjct: 189 ESEAXTAFGDGTXYXEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSXQRRHQKLIEESPA 248
Query: 314 PALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMIS 373
L + R + + +IGY G GT EFL+D+ FYF+E NTR+QVEH V+E +S
Sbjct: 249 ILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEXNTRLQVEHCVSEXVS 308
Query: 374 SVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGP 433
+D+IE+ I VA G L QE I L GHSIECRI AED K F P PG+IT Y+P G
Sbjct: 309 GIDIIEQXIKVAEGYALP-SQESIKLNGHSIECRITAEDS-KTFLPSPGKITKYIPPAGR 366
Query: 434 FVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKL 493
VR +SH Y DY VP YDS +GKL+VWA R KAI + K AL++ +I+G+ TT ++H
Sbjct: 367 NVRXESHCYQDYSVPAYYDSXIGKLVVWAEDRNKAIAKXKVALDELLISGIKTTKDFHLS 426
Query: 494 ILDVEDFKNGKVDTAFIPKH 513
+ DF N DT ++ +H
Sbjct: 427 XXENPDFINNNYDTNYLARH 446
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/464 (47%), Positives = 307/464 (66%), Gaps = 20/464 (4%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
KIL+ANRGEIA RVI+TA +MGI VA+YS DK ALHV++ADE+V IG P++QSY++I
Sbjct: 4 KILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVI 63
Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
V++A + G +HPGYGFL+EN+ F E G+ F+GP +I MGDK T+++
Sbjct: 64 DKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIA 123
Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
+ A V TVPG GL++ +EAVK+++++G+PVMIKA+AGGGG+GMR+A E + Q
Sbjct: 124 QEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQS 183
Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAP 312
+K+EAA +FG+D +++EK+V PRHIE QVL D +GN ++ GER+CSIQRRNQK++EEAP
Sbjct: 184 SKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAP 243
Query: 313 SPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMI 372
SP L R+AMG+ ++GY GTVEF++D + +FYF+EMNTR+QVEHPVTE+I
Sbjct: 244 SPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQVEHPVTELI 303
Query: 373 SSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLP--- 429
+ VDL+E+ I VA G L Q D+ L G +IE R+ AEDP++ F P GR+T Y P
Sbjct: 304 TGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPAE 363
Query: 430 -AGGPF----------------VRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERM 472
A GP VR D+ VY + YD ++ KL WAPTR AIE M
Sbjct: 364 TAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRAAAIEAM 423
Query: 473 KRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQE 516
+ AL+ + G+ + + ++D F +G + TAFI + E
Sbjct: 424 RIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPE 467
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 404 bits (1037), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/453 (46%), Positives = 291/453 (64%), Gaps = 13/453 (2%)
Query: 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSS- 126
T R K+LVANRGEIA+RV R E+GI VA+YS D + H ADE+ +GE
Sbjct: 3 TRRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPI 62
Query: 127 QSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKS 186
++YL I ++ A + +HPGYGFL+EN F + CRE GI FIGPN + + + GDK
Sbjct: 63 EAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKV 122
Query: 187 TARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEF 246
AR NAG+P +PGSDG + E+ V A+ G+P++IKA GGGGRGMR+ + E
Sbjct: 123 KARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEV 182
Query: 247 VKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQK 306
+ ++AKSEA AAFG+D VY+EK ++NP+HIE Q+L D GN+VH ERDCS+QRR+QK
Sbjct: 183 KEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQK 242
Query: 307 LLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQV 364
++E APS +L+ ELR+ + + S+GY+ GTVEFL+ DE FYF+E+N RIQV
Sbjct: 243 VVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSGDE---FYFIEVNPRIQV 299
Query: 365 EHPVTEMISSVDLIEEQIHVAMGGKLRY------KQEDIVLQGHSIECRINAEDPFKNFR 418
EH +TEMI+ +D+++ QI +A G L KQEDI + G++I+ R+ EDP NF
Sbjct: 300 EHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFM 359
Query: 419 PGPGRITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALN 477
P G+I AY GG VR+D+ + + V+ P YDSLL KL WA T E+A +M R L
Sbjct: 360 PDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLR 419
Query: 478 DTIITGVPTTIEYHKLILDVEDFKNGKVDTAFI 510
+ I G+ T I + + ++ F +G+ DT+FI
Sbjct: 420 EFRIRGIKTNIPFLENVVQHPKFLSGEYDTSFI 452
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/447 (48%), Positives = 295/447 (65%), Gaps = 1/447 (0%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
+++LVANRGEIA RV+R+A +GI VAV+S ID+ A HV AD +V +G A + SYL
Sbjct: 9 QRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLR 68
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
+++AA++ G +HPGYGFL+ENA F C E G+ F+GP +I MG KS A+
Sbjct: 69 GDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKAL 128
Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
M+ AGVP VPG G Q E + A +G+PV++KA AGGGG+GM++ + E + L
Sbjct: 129 MEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALS 188
Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311
A+ EA AAFG+ + +EKY+ PRH+E QV AD++G+ ++ ERDCSIQRR+QK++EEA
Sbjct: 189 SAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEA 248
Query: 312 PSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEM 371
P+P L ELR+AMG+ +IGY+G GTVEFLLDERG F+FMEMNTR+QVEHPVTE
Sbjct: 249 PAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRLQVEHPVTEA 308
Query: 372 ISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYL-PA 430
I+ +DL+ QI VA G L QE + L GH+IE R+ AEDP +F P GR+ Y A
Sbjct: 309 ITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEGDFLPASGRLMLYREAA 368
Query: 431 GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490
GP R+DS V V P YD +L KLI W TRE+A +R+ L +T + G+ T + +
Sbjct: 369 AGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTNLAF 428
Query: 491 HKLILDVEDFKNGKVDTAFIPKHEQEL 517
+ IL F ++DT FI +H+ +L
Sbjct: 429 LRRILGHPAFAAAELDTGFIARHQDDL 455
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/466 (44%), Positives = 284/466 (60%), Gaps = 15/466 (3%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSS------ 126
KILVANR EIA+RV R A+E+GI VA+++ DK ALH ADES +G P
Sbjct: 16 KILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGP 75
Query: 127 -QSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDK 185
+SYL I V+ A G +HPGYG L+E+ FV+ C + GI FIGP D++R +G+K
Sbjct: 76 IESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNK 135
Query: 186 STARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDE 245
AR + GVP VP ++ L E K+A +G+PVM+KA+ GGGGRGMR+ + +
Sbjct: 136 VAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEAD 195
Query: 246 FVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQ 305
K + +AK EA AAFG D VYLEK V+ RH+E Q+L D +GNVVH ERDCS+QRRNQ
Sbjct: 196 LAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQ 255
Query: 306 KLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQV 364
K++E AP+P L+ R+ + + YIG GTVE+L+D + G FYF+E+N RIQV
Sbjct: 256 KVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQV 315
Query: 365 EHPVTEMISSVDLIEEQIHVAMGGKLRY------KQEDIVLQGHSIECRINAEDPFKNFR 418
EH VTE+++ +D+++ QIH+ G + QEDI L GH+++CR+ EDP NF
Sbjct: 316 EHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFI 375
Query: 419 PGPGRITAYLPAGGPFVRMDSHV-YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALN 477
P GRITAY A G +R+D Y ++ YD LL K+ WAP +AI RM RAL
Sbjct: 376 PDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALR 435
Query: 478 DTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAVRNQ 523
+ I GV T + + + I+ F++ T FI + Q V+ Q
Sbjct: 436 EFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQQVKRQ 481
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/466 (44%), Positives = 284/466 (60%), Gaps = 15/466 (3%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSS------ 126
KILVANR EIA+RV R A+E+GI VA+++ DK ALH ADES +G P
Sbjct: 16 KILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGP 75
Query: 127 -QSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDK 185
+SYL I V+ A G +HPGYG L+E+ FV+ C + GI FIGP D++R +G+K
Sbjct: 76 IESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNK 135
Query: 186 STARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDE 245
AR + GVP VP ++ L E K+A +G+PVM+KA+ GGGGRGMR+ + +
Sbjct: 136 VAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEAD 195
Query: 246 FVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQ 305
K + +AK EA AAFG D VYLEK V+ RH+E Q+L D +GNVVH ERDCS+QRRNQ
Sbjct: 196 LAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQ 255
Query: 306 KLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQV 364
K++E AP+P L+ R+ + + YIG GTVE+L+D + G FYF+E+N RIQV
Sbjct: 256 KVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQV 315
Query: 365 EHPVTEMISSVDLIEEQIHVAMGGKLRY------KQEDIVLQGHSIECRINAEDPFKNFR 418
EH VTE+++ +D+++ QIH+ G + QEDI L GH+++CR+ EDP NF
Sbjct: 316 EHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFI 375
Query: 419 PGPGRITAYLPAGGPFVRMDSHV-YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALN 477
P GRITAY A G +R+D Y ++ YD LL K+ WAP +AI RM RAL
Sbjct: 376 PDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALR 435
Query: 478 DTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAVRNQ 523
+ I GV T + + + I+ F++ T FI + Q V+ Q
Sbjct: 436 EFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQQVKRQ 481
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/449 (45%), Positives = 287/449 (63%), Gaps = 13/449 (2%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +G + ++SYL
Sbjct: 28 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 87
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
I ++ A +HPGYGFL+EN F C E GI FIGP+ + + + GDK AR
Sbjct: 88 NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 147
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
T A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E E
Sbjct: 148 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 207
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
+AKSEA +FGN VY+E+Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E
Sbjct: 208 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEV 267
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPV 368
APS L+P LR+ + D +I Y+ GTVEFL+ DE F+F+E+N R+QVEH +
Sbjct: 268 APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTI 324
Query: 369 TEMISSVDLIEEQIHVAMGGKL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPG 422
TEM++ +D+++ QI VA G L +Q+DI G++I+CRI EDP +F P G
Sbjct: 325 TEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTG 384
Query: 423 RITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTII 481
I AY +GG VR+D+ + + P YDSLL KL A + ++A E+M R+L + I
Sbjct: 385 TIIAYRSSGGAGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRI 444
Query: 482 TGVPTTIEYHKLILDVEDFKNGKVDTAFI 510
GV T I + ++ + F +G T FI
Sbjct: 445 RGVKTNIPFLINVMKNKKFTSGDYTTKFI 473
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/449 (45%), Positives = 287/449 (63%), Gaps = 13/449 (2%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +G + ++SYL
Sbjct: 5 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 64
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
I ++ A +HPGYGFL+EN F C E GI FIGP+ + + + GDK AR
Sbjct: 65 NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 124
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
T A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E E
Sbjct: 125 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 184
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
+AKSEA +FGN VY+E+Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E
Sbjct: 185 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEV 244
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPV 368
APS L+P LR+ + D +I Y+ GTVEFL+ DE F+F+E+N R+QVEH +
Sbjct: 245 APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTI 301
Query: 369 TEMISSVDLIEEQIHVAMGGKL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPG 422
TEM++ +D+++ QI VA G L +Q+DI G++I+CRI EDP +F P G
Sbjct: 302 TEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTG 361
Query: 423 RITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTII 481
I AY +GG VR+D+ + + P YDSLL KL A + ++A E+M R+L + I
Sbjct: 362 TIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRI 421
Query: 482 TGVPTTIEYHKLILDVEDFKNGKVDTAFI 510
GV T I + ++ + F +G T FI
Sbjct: 422 RGVKTNIPFLINVMKNKKFTSGDYTTKFI 450
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/449 (45%), Positives = 287/449 (63%), Gaps = 13/449 (2%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +G + ++SYL
Sbjct: 28 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 87
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
I ++ A +HPGYGFL+EN F C E GI FIGP+ + + + GDK AR
Sbjct: 88 NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 147
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
T A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E E
Sbjct: 148 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 207
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
+AKSEA +FGN VY+E+Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E
Sbjct: 208 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEV 267
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPV 368
APS L+P LR+ + D +I Y+ GTVEFL+ DE F+F+E+N R+QVEH +
Sbjct: 268 APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTI 324
Query: 369 TEMISSVDLIEEQIHVAMGGKL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPG 422
TEM++ +D+++ QI VA G L +Q+DI G++I+CRI EDP +F P G
Sbjct: 325 TEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTG 384
Query: 423 RITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTII 481
I AY +GG VR+D+ + + P YDSLL KL A + ++A E+M R+L + I
Sbjct: 385 TIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRI 444
Query: 482 TGVPTTIEYHKLILDVEDFKNGKVDTAFI 510
GV T I + ++ + F +G T FI
Sbjct: 445 RGVKTNIPFLINVMKNKKFTSGDYTTKFI 473
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/449 (45%), Positives = 287/449 (63%), Gaps = 13/449 (2%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +G + ++SYL
Sbjct: 5 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 64
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
I ++ A +HPGYGFL+EN F C E GI FIGP+ + + + GDK AR
Sbjct: 65 NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 124
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
T A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E E
Sbjct: 125 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 184
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
+AKSEA +FGN VY+E+Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E
Sbjct: 185 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEV 244
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPV 368
APS L+P LR+ + D +I Y+ GTVEFL+ DE F+F+E+N R+QVEH +
Sbjct: 245 APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTI 301
Query: 369 TEMISSVDLIEEQIHVAMGGKL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPG 422
TEM++ +D+++ QI VA G L +Q+DI G++I+CRI EDP +F P G
Sbjct: 302 TEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTG 361
Query: 423 RITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTII 481
I AY +GG VR+D+ + + P YDSLL KL A + ++A E+M R+L + I
Sbjct: 362 TIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRI 421
Query: 482 TGVPTTIEYHKLILDVEDFKNGKVDTAFI 510
GV T I + ++ + F +G T FI
Sbjct: 422 RGVKTNIPFLINVMKNKKFTSGDYTTKFI 450
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/449 (45%), Positives = 287/449 (63%), Gaps = 13/449 (2%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +G + ++SYL
Sbjct: 5 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 64
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
I ++ A +HPGYGFL+EN F C E GI FIGP+ + + + GDK AR
Sbjct: 65 NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 124
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
T A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E E
Sbjct: 125 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 184
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
+AKSEA +FGN VY+E+Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E
Sbjct: 185 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEV 244
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPV 368
APS L+P LR+ + D +I Y+ GTVEFL+ DE F+F+E+N R+QVEH +
Sbjct: 245 APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTI 301
Query: 369 TEMISSVDLIEEQIHVAMGGKL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPG 422
TEM++ +D+++ QI VA G L +Q+DI G++I+CRI EDP +F P G
Sbjct: 302 TEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTG 361
Query: 423 RITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTII 481
I AY +GG VR+D+ + + P YDSLL KL A + ++A E+M R+L + I
Sbjct: 362 TIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRI 421
Query: 482 TGVPTTIEYHKLILDVEDFKNGKVDTAFI 510
GV T I + ++ + F +G T FI
Sbjct: 422 RGVKTNIPFLINVMKNKKFTSGDYTTKFI 450
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/449 (45%), Positives = 286/449 (63%), Gaps = 13/449 (2%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +G + ++SYL
Sbjct: 28 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 87
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
I ++ A +HPGYGFL+EN F C E GI FIGP+ + + + GDK AR
Sbjct: 88 NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 147
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
T A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E E
Sbjct: 148 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 207
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
+AKSEA +FGN VY+E+Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E
Sbjct: 208 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEV 267
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPV 368
APS L+P LR+ + D +I Y+ GTVEFL+ DE F+F+E+N R+QVEH +
Sbjct: 268 APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTI 324
Query: 369 TEMISSVDLIEEQIHVAMGGKL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPG 422
TEM++ +D+++ QI VA G L +Q+DI G++I+CRI EDP +F P G
Sbjct: 325 TEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTG 384
Query: 423 RITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTII 481
I AY +GG VR+D+ + + P YDSLL KL A + ++A E M R+L + I
Sbjct: 385 TIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEEMVRSLREMRI 444
Query: 482 TGVPTTIEYHKLILDVEDFKNGKVDTAFI 510
GV T I + ++ + F +G T FI
Sbjct: 445 RGVKTNIPFLINVMKNKKFTSGDYTTKFI 473
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/449 (44%), Positives = 286/449 (63%), Gaps = 13/449 (2%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
+K+LVANRGEIA+R+ A E+ I VA+YS DK +LH ADES +G + ++SYL
Sbjct: 28 KKLLVANRGEIAIRIFEAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 87
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
I ++ A +HPGYGFL+EN F C E GI FIGP+ + + + GDK AR
Sbjct: 88 NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 147
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
T A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E E
Sbjct: 148 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 207
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310
+AKSEA +FGN VY+E+Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E
Sbjct: 208 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEV 267
Query: 311 APSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPV 368
APS L+P LR+ + D +I Y+ GTVEFL+ DE F+F+E+N R+QVEH +
Sbjct: 268 APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTI 324
Query: 369 TEMISSVDLIEEQIHVAMGGKL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPG 422
TEM++ +D+++ QI VA G L +Q+DI G++I+CRI EDP +F P G
Sbjct: 325 TEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTG 384
Query: 423 RITAYLPAGGPFVRMDS-HVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTII 481
I AY +GG VR+D+ + + P YDSLL KL A + ++A E+M R+L + I
Sbjct: 385 TIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRI 444
Query: 482 TGVPTTIEYHKLILDVEDFKNGKVDTAFI 510
GV T I + ++ + F +G T FI
Sbjct: 445 RGVKTNIPFLINVMKNKKFTSGDYTTKFI 473
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 358 bits (918), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/441 (41%), Positives = 275/441 (62%), Gaps = 6/441 (1%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
E +L+ANRGEIAVR+++T MGI VAVYS DK + HV AD SV + ++++YL
Sbjct: 32 ETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLD 91
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
I +++AA G + PGYGFL+ENA F + C + I F+GP+ D+IR +G K +ARE
Sbjct: 92 IDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREI 151
Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
+ A VP VPGS GL++ +EA ++A +L +PVM+K+TAGGGG G++ D+ ++ +
Sbjct: 152 AERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFE 210
Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311
+ + + FG+ GV++E++V N RH+E Q++ D +G + GERDCS+QRRNQK++EE
Sbjct: 211 TVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEET 270
Query: 312 PSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTE 370
P+P L R M + Y GTVEF+ DE R FYF+E+N R+QVEHP+TE
Sbjct: 271 PAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPITE 330
Query: 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAY-LP 429
M++ +DL+E + +A + I + G SIE R+ AE+P K+FRP PG++T+ P
Sbjct: 331 MVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSFP 390
Query: 430 AGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIE 489
+ + R+D+ V V YD L K+IV R AI ++ +ALN+T + G T I+
Sbjct: 391 S---WARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYGCITNID 447
Query: 490 YHKLILDVEDFKNGKVDTAFI 510
Y + I + FK KV T +
Sbjct: 448 YLRSIASSKMFKEAKVATKVL 468
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/508 (30%), Positives = 260/508 (51%), Gaps = 78/508 (15%)
Query: 72 EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
EK+L+AN G AV+ +R+ ++EM I V + + D +A ++K+AD V +
Sbjct: 42 EKVLIANNGIAAVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 101
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
P++ +Y + +L A + G+G +EN E+ ++GI F+GP ++
Sbjct: 102 PGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMW 161
Query: 181 IMGDKSTARETMKNAGVPTVPGS--------------------------DGLLQSTEEAV 214
+GDK + + AG+PT+P S G ++ ++ +
Sbjct: 162 ALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGL 221
Query: 215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274
+ A+E+G+PVMIKA+ GGGG+G+R D+F L +Q ++E + +++ + +
Sbjct: 222 QAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGS----PIFVMRLAKQ 277
Query: 275 PRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXS 334
RH+E Q+LAD+YGN + RDCS+QRR+QK++EEAP+ TP + + M
Sbjct: 278 SRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLAKM 337
Query: 335 IGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQ 394
+GY+ GTVE+L + GSFYF+E+N R+QVEHP TEM++ V+L Q+ +AMG L Y+
Sbjct: 338 VGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPL-YRI 396
Query: 395 EDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITAYLPAG 431
+DI + +GH I RI +E+P + F+P G +
Sbjct: 397 KDIRMMYGVSPWGDSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQEL---- 452
Query: 432 GPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTIITG-V 484
R + +V+ + V + DS G W RE+AI M AL + I G
Sbjct: 453 --NFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDF 510
Query: 485 PTTIEYHKLILDVEDFKNGKVDTAFIPK 512
TT+EY +L+ E F+ ++DT ++ +
Sbjct: 511 RTTVEYLIKLLETESFQMNRIDTGWLDR 538
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/507 (31%), Positives = 258/507 (50%), Gaps = 79/507 (15%)
Query: 72 EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
EK+L+AN G AV+ +R+ A+EM I V + + D +A ++K+AD V +
Sbjct: 41 EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 100
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
P++ +Y + ++ A + G+G +EN E+ ++G+ F+GP +++
Sbjct: 101 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 160
Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
+GDK + + VPT+P S G ++ +E
Sbjct: 161 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 220
Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
++ A+ +GFP+MIKA+ GGGG+G+R A+ ++F L +Q +SE + ++L K Q
Sbjct: 221 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLAQ 276
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXX 333
+ RH+E Q+LAD+YGN V RDCSIQRR+QK++EEAP+ + + M
Sbjct: 277 HARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAK 336
Query: 334 SIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK 393
++GY+ GTVE+L + GSF+F+E+N R+QVEHP TEMI+ V+L Q+ +AMG L ++
Sbjct: 337 TVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPL-HR 395
Query: 394 QEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
+DI L +GH I RI +E+P + F+P G +
Sbjct: 396 LKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQEL--- 452
Query: 431 GGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTIITG- 483
R +V+ + V + DS G W RE+AI M AL + I G
Sbjct: 453 ---NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGD 509
Query: 484 VPTTIEYHKLILDVEDFKNGKVDTAFI 510
TT+EY +L+ E F+N +DT ++
Sbjct: 510 FRTTVEYLINLLETESFQNNDIDTGWL 536
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/507 (31%), Positives = 258/507 (50%), Gaps = 79/507 (15%)
Query: 72 EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
EK+L+AN G AV+ +R+ A+EM I V + + D +A ++K+AD V +
Sbjct: 57 EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 116
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
P++ +Y + ++ A + G+G +EN E+ ++G+ F+GP +++
Sbjct: 117 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 176
Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
+GDK + + VPT+P S G ++ +E
Sbjct: 177 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236
Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
++ A+ +GFP+MIKA+ GGGG+G+R A+ ++F L +Q +SE + ++L K Q
Sbjct: 237 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLAQ 292
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXX 333
+ RH+E Q+LAD+YGN V RDCSIQRR+QK++EEAP+ + + M
Sbjct: 293 HARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAK 352
Query: 334 SIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK 393
++GY+ GTVE+L + GSF+F+E+N R+QVEHP TEMI+ V+L Q+ +AMG L ++
Sbjct: 353 TVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPL-HR 411
Query: 394 QEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
+DI L +GH I RI +E+P + F+P G +
Sbjct: 412 LKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQEL--- 468
Query: 431 GGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTIITG- 483
R +V+ + V + DS G W RE+AI M AL + I G
Sbjct: 469 ---NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGD 525
Query: 484 VPTTIEYHKLILDVEDFKNGKVDTAFI 510
TT+EY +L+ E F+N +DT ++
Sbjct: 526 FRTTVEYLINLLETESFQNNDIDTGWL 552
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/507 (31%), Positives = 258/507 (50%), Gaps = 79/507 (15%)
Query: 72 EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
EK+L+AN G AV+ +R+ A+EM I V + + D +A ++K+AD V +
Sbjct: 57 EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 116
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
P++ +Y + ++ A + G+G +EN E+ ++G+ F+GP +++
Sbjct: 117 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 176
Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
+GDK + + VPT+P S G ++ +E
Sbjct: 177 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236
Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
++ A+ +GFP+MIKA+ GGGG+G+R A+ ++F L +Q +SE + ++L K Q
Sbjct: 237 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLAQ 292
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXX 333
+ RH+E Q+LAD+YGN V RDCSIQRR+QK++EEAP+ + + M
Sbjct: 293 HARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAK 352
Query: 334 SIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK 393
++GY+ GTVE+L + GSF+F+E+N R+QVEHP TEMI+ V+L Q+ +AMG L ++
Sbjct: 353 TVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPL-HR 411
Query: 394 QEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
+DI L +GH I RI +E+P + F+P G +
Sbjct: 412 LKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQEL--- 468
Query: 431 GGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTIITG- 483
R +V+ + V + DS G W RE+AI M AL + I G
Sbjct: 469 ---NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGD 525
Query: 484 VPTTIEYHKLILDVEDFKNGKVDTAFI 510
TT+EY +L+ E F+N +DT ++
Sbjct: 526 FRTTVEYLINLLETESFQNNDIDTGWL 552
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/507 (31%), Positives = 258/507 (50%), Gaps = 79/507 (15%)
Query: 72 EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
EK+L+AN G AV+ +R+ A+EM I V + + D +A ++K+AD V +
Sbjct: 51 EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 110
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
P++ +Y + ++ A + G+G +EN E+ ++G+ F+GP +++
Sbjct: 111 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 170
Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
+GDK + + VPT+P S G ++ +E
Sbjct: 171 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 230
Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
++ A+ +GFP+MIKA+ GGGG+G+R A+ ++F L +Q +SE + ++L K Q
Sbjct: 231 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLAQ 286
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXX 333
+ RH+E Q+LAD+YGN V RDCSIQRR+QK++EEAP+ + + M
Sbjct: 287 HARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAK 346
Query: 334 SIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK 393
++GY+ GTVE+L + GSF+F+E+N R+QVEHP TEMI+ V+L Q+ +AMG L ++
Sbjct: 347 TVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPL-HR 405
Query: 394 QEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITAYLPA 430
+DI L +GH I RI +E+P + F+P G +
Sbjct: 406 LKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQEL--- 462
Query: 431 GGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTIITG- 483
R +V+ + V + DS G W RE+AI M AL + I G
Sbjct: 463 ---NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGD 519
Query: 484 VPTTIEYHKLILDVEDFKNGKVDTAFI 510
TT+EY +L+ E F+N +DT ++
Sbjct: 520 FRTTVEYLINLLETESFQNNDIDTGWL 546
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 214 bits (546), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 243/512 (47%), Gaps = 84/512 (16%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIP-----------CVAVYSTIDKDALHVKLADESVCIG 121
KIL+AN G AV+ IR+ + +A ++ +A ++++AD+ + +
Sbjct: 48 KILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVP 107
Query: 122 EAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCRE--HGINFIGPNPDSI 179
++ +Y + ++ A + G+G +EN + E + + FIGP +++
Sbjct: 108 GGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAM 167
Query: 180 RIMGDKSTARETMKNAGVPTVPGS------------------------DGLLQSTEEAVK 215
R +GDK ++ ++A VP +P S G S E+ ++
Sbjct: 168 RSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQ 227
Query: 216 LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP 275
A +GFPVMIKA+ GGGG+G+R + ++F+ L QA +E + +++ K
Sbjct: 228 KAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAGRA 283
Query: 276 RHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSI 335
RH+E Q+LAD+YG + RDCS+QRR+QK++EEAP E M +
Sbjct: 284 RHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLV 343
Query: 336 GYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR--- 391
GY+ GTVE+L + G FYF+E+N R+QVEHP TEM+S V+L Q+ +AMG +
Sbjct: 344 GYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRIS 403
Query: 392 -------------------YKQEDI-------VLQGHSIECRINAEDPFKNFRPGPGRIT 425
+K +D + +GH CRI +EDP F+P G +
Sbjct: 404 DIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLH 463
Query: 426 AYLPAGGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDT 479
R S+V+ + V + DS G + + R+ + + M AL +
Sbjct: 464 EL------NFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKEL 517
Query: 480 IITG-VPTTIEYHKLILDVEDFKNGKVDTAFI 510
I G TT+EY +L+ EDF++ + T ++
Sbjct: 518 SIRGDFRTTVEYLIKLLETEDFEDNTITTGWL 549
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 214 bits (546), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 243/512 (47%), Gaps = 84/512 (16%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIP-----------CVAVYSTIDKDALHVKLADESVCIG 121
KIL+AN G AV+ IR+ + +A ++ +A ++++AD+ + +
Sbjct: 49 KILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVP 108
Query: 122 EAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCRE--HGINFIGPNPDSI 179
++ +Y + ++ A + G+G +EN + E + + FIGP +++
Sbjct: 109 GGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAM 168
Query: 180 RIMGDKSTARETMKNAGVPTVPGS------------------------DGLLQSTEEAVK 215
R +GDK ++ ++A VP +P S G S E+ ++
Sbjct: 169 RSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQ 228
Query: 216 LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP 275
A +GFPVMIKA+ GGGG+G+R + ++F+ L QA +E + +++ K
Sbjct: 229 KAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAGRA 284
Query: 276 RHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSI 335
RH+E Q+LAD+YG + RDCS+QRR+QK++EEAP E M +
Sbjct: 285 RHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLV 344
Query: 336 GYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR--- 391
GY+ GTVE+L + G FYF+E+N R+QVEHP TEM+S V+L Q+ +AMG +
Sbjct: 345 GYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRIS 404
Query: 392 -------------------YKQEDI-------VLQGHSIECRINAEDPFKNFRPGPGRIT 425
+K +D + +GH CRI +EDP F+P G +
Sbjct: 405 DIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLH 464
Query: 426 AYLPAGGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDT 479
R S+V+ + V + DS G + + R+ + + M AL +
Sbjct: 465 EL------NFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKEL 518
Query: 480 IITG-VPTTIEYHKLILDVEDFKNGKVDTAFI 510
I G TT+EY +L+ EDF++ + T ++
Sbjct: 519 SIRGDFRTTVEYLIKLLETEDFEDNTITTGWL 550
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKE 242
GDK ++ K A V T+PG DG+++ EEAV++A E+G+PVMIKA+AGGGG+GMR+A +
Sbjct: 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWD 66
Query: 243 PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHI 278
+E + + EAA++FG+D + +EK++ NPRHI
Sbjct: 67 DEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHI 102
>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORQ|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORR|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
pdb|3ORR|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
Length = 377
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Query: 178 SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-GGRG 236
+I+++ D+ T +ET+K+AG VP ++ + + K + LG+P ++K GG G+G
Sbjct: 104 AIQLLQDRLTEKETLKSAGTKVVPFIS--VKESTDIDKAIETLGYPFIVKTRFGGYDGKG 161
Query: 237 MRL---AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293
L K+ E KL++ SE A EKY+ + + V + F
Sbjct: 162 QVLINNEKDLQEGFKLIE--TSECVA---------EKYLNIKKEVSLTVTRGNNNQITFF 210
Query: 294 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 353
++ + RNQ +L + PA + +A + SI +IG TVEF +D
Sbjct: 211 PLQEN--EHRNQ-ILFKTIVPARIDKTAEAK-EQVNKIIQSIHFIGTFTVEFFIDSNNQL 266
Query: 354 YFMEMNTR 361
Y E+ R
Sbjct: 267 YVNEIAPR 274
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 101/240 (42%), Gaps = 18/240 (7%)
Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
E G+ IG D+I D+ MK G+ T G+ + EEA+ +A ++GFP +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
I+ + GG G +A +EF ++ + + + +++ + + E +V+ D
Sbjct: 168 IRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLIDESLIGWKEYEMEVVRD 223
Query: 286 KYGNVVHFGERDCSIQRRNQKLLEE------APSPALTPELRKAMGDXXXXXXXSIGY-I 338
K N + CSI+ + + AP+ LT + + M + IG
Sbjct: 224 KNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVET 279
Query: 339 GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDI 397
G V+F ++ + G +EMN R+ + + + + +A+G L DI
Sbjct: 280 GGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDI 339
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 36/238 (15%)
Query: 168 GINFIGPNPDSIRIMGDKSTARETMKNA--GVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
G+ IG +PD+I D++ RE ++A + ++ + + E AV+ A E+G+P++
Sbjct: 658 GVPVIGTSPDAI----DRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLA 284
++ + GGR M + + + + Q A S ND V L+ ++ + ++ +
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVS-----VSNDAPVLLDHFLDDAVEVDVDAIC 768
Query: 285 DK----YGNV--------VHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXX 332
D G + VH G+ CS+ P+ L+ E++ M
Sbjct: 769 DGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYTLSQEIQDVMRQQVQKLA 817
Query: 333 XSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 390
+ G+ V+F + + Y +E+N R P + V L + V G L
Sbjct: 818 FELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSL 874
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 101/240 (42%), Gaps = 18/240 (7%)
Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
E G+ IG D+I D+ MK G+ T G+ + EEA+ +A ++GFP +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
I+ + GG G +A +EF ++ + + + +++ + + E +V+ D
Sbjct: 168 IRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLIDESLIGWKEYEMEVVRD 223
Query: 286 KYGNVVHFGERDCSIQRRNQKLLEE------APSPALTPELRKAMGDXXXXXXXSIGY-I 338
K N + CSI+ + + AP+ LT + + M + IG
Sbjct: 224 KNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVET 279
Query: 339 GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDI 397
G V+F ++ + G +EMN R+ + + + + +A+G L DI
Sbjct: 280 GGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDI 339
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 36/238 (15%)
Query: 168 GINFIGPNPDSIRIMGDKSTARETMKNA--GVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
G+ IG +PD+I D++ RE ++A + ++ + + E AV+ A E+G+P++
Sbjct: 658 GVPVIGTSPDAI----DRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLA 284
++ + GGR M + + + + Q A S ND V L+ ++ + ++ +
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVS-----VSNDAPVLLDHFLDDAVEVDVDAIC 768
Query: 285 DK----YGNV--------VHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXX 332
D G + VH G+ CS+ P+ L+ E++ M
Sbjct: 769 DGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYTLSQEIQDVMRQQVQKLA 817
Query: 333 XSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 390
+ G+ V+F + + Y +E+N R P + V L + V G L
Sbjct: 818 FELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSL 874
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 101/240 (42%), Gaps = 18/240 (7%)
Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
E G+ IG D+I D+ MK G+ T G+ + EEA+ +A ++GFP +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
I+ + GG G +A +EF ++ + + + +++ + + E +V+ D
Sbjct: 168 IRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLIDESLIGWKEYEMEVVRD 223
Query: 286 KYGNVVHFGERDCSIQRRNQKLLEE------APSPALTPELRKAMGDXXXXXXXSIGY-I 338
K N + CSI+ + + AP+ LT + + M + IG
Sbjct: 224 KNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVET 279
Query: 339 GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDI 397
G V+F ++ + G +EMN R+ + + + + +A+G L DI
Sbjct: 280 GGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDI 339
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 36/238 (15%)
Query: 168 GINFIGPNPDSIRIMGDKSTARETMKNA--GVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
G+ IG +PD+I D++ RE ++A + ++ + + E AV+ A E+G+P++
Sbjct: 658 GVPVIGTSPDAI----DRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLA 284
++A+ GGR M + + + + Q A S ND V L+ ++ + ++ +
Sbjct: 714 VRASYVLGGRAMEIVYDEADLRRYFQTAVS-----VSNDAPVLLDHFLDDAVEVDVDAIC 768
Query: 285 DK----YGNV--------VHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXX 332
D G + VH G+ CS+ P+ L+ E++ M
Sbjct: 769 DGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYTLSQEIQDVMRQQVQKLA 817
Query: 333 XSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 390
+ G+ V+F + + Y +E+N R P + V L + V G L
Sbjct: 818 FELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSL 874
>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
Length = 307
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL 206
LH YG E+ GI + G N S I DK+ +++ ++ G+ T P L
Sbjct: 63 LHGKYG---EDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIET-PDWIEL 118
Query: 207 LQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG- 265
+ + D+LGFP+++K +GG G+++ + DE + L+ F D
Sbjct: 119 TKXEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISXLE-------TVFEWDSE 171
Query: 266 VYLEKYVQ 273
V +EKY++
Sbjct: 172 VVIEKYIK 179
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
V+ G+ GP+ + I G K+ A+E MK G+PT S EEA ++
Sbjct: 100 VDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTA--DHAAFTSYEEAKAYIEQK 157
Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEF 280
G P++IKA G+G+ +A+ +E + + A + V +E+Y++ EF
Sbjct: 158 GAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEGE---EF 214
Query: 281 QVLADKYGNVVH 292
+A G V+
Sbjct: 215 SFMAFVNGEKVY 226
>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp
pdb|3VPD|B Chain B, Lysx From Thermus Thermophilus Complexed With Amp-pnp
Length = 281
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234
P+ I GDK + AG+P L EEA++L + G+PV++K G G
Sbjct: 79 RPEVIEACGDKWATSVALAKAGLPQ--PKTALATDREEALRLMEAFGYPVVLKPVIGSWG 136
Query: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-RHIEFQVLADK 286
R LAK D E F + Y+++YV+ P R I V+ ++
Sbjct: 137 R--LLAKVTDRAAAEALLEHKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGER 187
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 40/237 (16%)
Query: 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-------KLADESVCI 120
T +KIL+ GE+ + A +G+ VAV + A+ V + D+
Sbjct: 16 TDSAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLW 75
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
+ +IP + + + GY F+ PN +
Sbjct: 76 SVVEREKPDAIIPEIEAINLDALFEFEKDGY-------------------FVVPNARATW 116
Query: 181 IMGDKSTARETM-KNAGVPTVPGSDGLLQST-EEAVKLADELGFPVMIKATAGGGGRGMR 238
I + RET+ K A VPT S + +T +E + +++G+P KA G+G
Sbjct: 117 IAMHRERLRETLVKEAKVPT---SRYMYATTLDELYEACEKIGYPCHTKAIMSSSGKGSY 173
Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295
K P++ K ++AK++A + EK + HI+F V + V HF E
Sbjct: 174 FVKGPEDIPKAWEEAKTKARGS-------AEKIIVE-EHIDFDVEVTELA-VRHFDE 221
>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
Length = 403
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 11/193 (5%)
Query: 172 IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TA 230
I P+ +IR + +K +E ++ G+P + + + E K+ ++LG+P+M+K+ T
Sbjct: 111 IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTM 170
Query: 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 290
GRG D+ EA A + +Y EK+ +E V+ K +
Sbjct: 171 AYDGRGNFRVNSQDDI--------PEALEALKDRPLYAEKWAYFK--MELAVIVVKTKDE 220
Query: 291 VHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDER 350
V ++Q + L AP+ ++ + + + + GV VE L E
Sbjct: 221 VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLED 280
Query: 351 GSFYFMEMNTRIQ 363
S E+ +RI
Sbjct: 281 DSIMLCEIASRIH 293
>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|B Chain B, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|C Chain C, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|D Chain D, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
Length = 403
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 11/193 (5%)
Query: 172 IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TA 230
I P+ +IR + +K +E ++ G+P + + + E K+ ++LG+P+M+K+ T
Sbjct: 111 IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTM 170
Query: 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 290
GRG D+ EA A + +Y EK+ +E V+ K +
Sbjct: 171 AYDGRGNFRVNSQDDI--------PEALEALKDRPLYAEKWAY--FKMELAVIVVKTKDE 220
Query: 291 VHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDER 350
V ++Q + L AP+ ++ + + + + GV VE L E
Sbjct: 221 VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLED 280
Query: 351 GSFYFMEMNTRIQ 363
S E+ +RI
Sbjct: 281 DSIMLCEIASRIH 293
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
V+ + G+ GPN ++ ++ G K+ A+ MK G+PT + E+A + +++
Sbjct: 79 VDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYE--VFTDFEKAKEYVEKV 136
Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
G P+++KA G+G + + ++ ++ L + ++ ++ V +E++++
Sbjct: 137 GAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE 189
>pdb|1UC8|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC8|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234
P+ I GDK + AG+P L EEA++L + G+PV++K G G
Sbjct: 79 RPEVIEACGDKWATSVALAKAGLPQ--PKTALATDREEALRLMEAFGYPVVLKPVIGSWG 136
Query: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-RHIEFQVLADK 286
R LA E F + Y+++YV+ P R I V+ ++
Sbjct: 137 R--LLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGER 187
>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase
pdb|2QK4|B Chain B, Human Glycinamide Ribonucleotide Synthetase
Length = 452
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 165 REHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224
R G+ GP ++ ++ K A+E M G+PT EEA FP
Sbjct: 109 RSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKA--FTKPEEACSFILSADFPA 166
Query: 225 MI-KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
++ KA+ G+G+ +AK +E K +Q+ E A + + +E+ +
Sbjct: 167 LVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELL 215
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 25/197 (12%)
Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGS--DGLLQSTEEAVKLADELGFPVMIKATAG 231
P ++ + D+ + + GVPT P DG + EE +K +G P ++K G
Sbjct: 86 PPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGP-EDLEEGLK---RVGLPALLKTRRG 141
Query: 232 G-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 290
G G+G L + +E + EA A G G+ LE +V R + + + G V
Sbjct: 142 GYDGKGQALVRTEEEAL--------EALKALGGRGLILEGFVPFDREVSLLAVRGRTGEV 193
Query: 291 VHFGERDCSIQRRNQK---LLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFL- 346
+ ++ R+ L AP+P + L+K ++ Y+GV +EF
Sbjct: 194 AFY----PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQ 249
Query: 347 LDERGSFYFMEMNTRIQ 363
+ E F EM R+
Sbjct: 250 VGE--ELLFNEMAPRVH 264
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219
V+ + G++ GP+ + I G K A++ MK +PT S +EA E
Sbjct: 78 LVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYE--TFTSFDEAKAYVQE 135
Query: 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIE 279
G P++IKA G+G+ +A +E + L + + V +E+Y+ E
Sbjct: 136 KGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSGE---E 192
Query: 280 FQVLADKYGNVVH 292
F ++A G V+
Sbjct: 193 FSLMAFVKGEKVY 205
>pdb|3AX6|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
Length = 380
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 172 IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231
I P+P ++ I+ DK +E +K G+P VP L++ E V+ E GFPV+ KA G
Sbjct: 88 IHPSPYTLEIIQDKFVQKEFLKKNGIP-VPEYK-LVKDLESDVR---EFGFPVVQKARKG 142
Query: 232 G-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 290
G GRG+ + K + L K E YLE++V+ + + V ++ G +
Sbjct: 143 GYDGRGVFIIKNEKD---LENAIKGET---------YLEEFVEIEKELAVXVARNEKGEI 190
Query: 291 VHF 293
+
Sbjct: 191 ACY 193
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR 142
A+++++ A + G +A S+ K L+ K + E + LL N+ + +
Sbjct: 13 ALQILKGAKDEGFETIAFGSSKVK-PLYTKYFPVADYFIEEKYPEEELL--NLNAVVVPT 69
Query: 143 GCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202
G + H G +E+ + + G N +R D++ R+ +K AG+ VP
Sbjct: 70 GSFVAHLG----------IELVENMKVPYFG-NKRVLRWESDRNLERKWLKKAGI-RVP- 116
Query: 203 SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVK 248
E + D++ PV++K GG+G LAK+P++F +
Sbjct: 117 ---------EVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWR 153
>pdb|1UC9|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC9|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234
P+ I GDK + AG+P L EEA++L + G+PV++K G G
Sbjct: 79 RPEVIEACGDKWATSVALAKAGLPQ--PKTALATDREEALRLMEAFGYPVVLKPVIGSWG 136
Query: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-RHIEFQVLADK 286
R E F + Y+++YV+ P R I V+ ++
Sbjct: 137 R--LXXXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGER 187
>pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219
V+ + G++ GP+ + I G K A++ K +PT S +EA E
Sbjct: 78 LVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLXKKYDIPTAEYE--TFTSFDEAKAYVQE 135
Query: 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIE 279
G P++IKA G+G+ +A +E + L + + V +E+Y+ E
Sbjct: 136 KGAPIVIKADGLAAGKGVTVAXTEEEAIACLHDFLEDEKFGDASASVVIEEYLSGE---E 192
Query: 280 FQVLADKYGNVVH 292
F + A G V+
Sbjct: 193 FSLXAFVKGEKVY 205
>pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 26/206 (12%)
Query: 168 GINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227
GI F+G + S I DKS KNAG+ T ++ +A +PV +K
Sbjct: 116 GIPFVGCDIQSSAICMDKSLTYIVAKNAGIAT----PAFWVINKDDRPVAATFTYPVFVK 171
Query: 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287
G G++ DE ++ A+ + + +E+ V + VL +
Sbjct: 172 PARSGSSFGVKKVNSADELDYAIESARQY------DSKILIEQAVSGC-EVGCAVLGNSA 224
Query: 288 GNVVHFGERD-----CSIQRRNQKLLEEAPS-------PA-LTPELRKAMGDXXXXXXXS 334
VV GE D I R +Q++ E S PA L+ E R + + +
Sbjct: 225 ALVV--GEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKT 282
Query: 335 IGYIGVGTVEFLLDERGSFYFMEMNT 360
+G G+ V+ L +RG E+NT
Sbjct: 283 LGCRGLARVDMFLQDRGRIVLNEVNT 308
>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
From Anaerococcus Prevotii
Length = 403
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 170 NFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229
N +G N ++ GDK +E K V T ++++ E + L PV++KAT
Sbjct: 95 NLVGLNEEAAIXCGDKYKXKEAFKKYNVNT--ARHFVVRNENELKNALENLKLPVIVKAT 152
Query: 230 AGGGGRGMRLAKEPDEFV 247
G +G+ +AK+ +E +
Sbjct: 153 DLQGSKGIYIAKKEEEAI 170
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR----GMRLAKEP 243
A+E + GVP PG + + EEA ++A+E G V+IKA GGR G++LA P
Sbjct: 8 AKEILARYGVPVPPGK--VAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTP 65
Query: 244 DE 245
E
Sbjct: 66 QE 67
>pdb|4EG0|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
pdb|4EG0|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
Length = 317
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 22/228 (9%)
Query: 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201
R LH GYG EN +GI + G + DK + + GVPT P
Sbjct: 68 RAFNALHGGYG---ENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPP 124
Query: 202 GSDGLLQSTEEAVKLAD---ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAA 258
+ +++ + A + D +LG P+ +K + G + K D L +A +
Sbjct: 125 -FETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATH-- 181
Query: 259 AAFGNDGVYLEKYVQNPRHIEFQVLAD------KYGNVVHFGERDCSIQRRNQKLLEEAP 312
+ V +EK ++ + D K F + + + L
Sbjct: 182 ----DKIVIVEKSIEGGGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCG 237
Query: 313 SPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 360
PA E + +G G +F+LD G+ YF+E+NT
Sbjct: 238 LPA---EQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNT 282
>pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|B Chain B, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|C Chain C, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|D Chain D, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 364
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 22/266 (8%)
Query: 107 DALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCRE 166
D H+ L ++ + + P + LI + + +G L E+ M R
Sbjct: 63 DPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122
Query: 167 HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD---ELGFP 223
+ F+G + S DK A+ +++AG+ P L ++ A A+ LG P
Sbjct: 123 ANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT-LTRTNRHAFSFAEVESRLGLP 181
Query: 224 VMIKATAGGGGRGM-RLAKEPDEFVKLLQQAKSEAAAAFGND-GVYLEKYVQNPRHIEFQ 281
+ +K G G+ ++A E Q + A AF D V +E+ ++ R IE
Sbjct: 182 LFVKPANQGSSVGVSKVANEA--------QYQQAVALAFEFDHKVVVEQGIKG-REIECA 232
Query: 282 VLADKYGNVVHFGE--RDCSIQRRNQKLLEEAPSPALTP-----ELRKAMGDXXXXXXXS 334
VL + GE + + K +++ + + P E+ + +
Sbjct: 233 VLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQT 292
Query: 335 IGYIGVGTVEFLLDERGSFYFMEMNT 360
+G G+ V+ L E+NT
Sbjct: 293 LGCAGMARVDVFLTADNEVVINEINT 318
>pdb|3LP8|A Chain A, Crystal Structure Of Phosphoribosylamine-Glycine Ligase
From Ehrlichia Chaffeensis
Length = 442
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
E GI GP+ + R+ K +E G+PT G T A K D+ P++
Sbjct: 105 EEGILVFGPSKAAARLESSKGFTKELCMRYGIPTA--KYGYFVDTNSAYKFIDKHKLPLV 162
Query: 226 IKATAGGGGRGMRLAKEPDEFVK-----LLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEF 280
+KA G+G + +E L+ EA A + +E++++ + I F
Sbjct: 163 VKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCA-----IIIEEFLEG-KEISF 216
Query: 281 QVLAD 285
L D
Sbjct: 217 FTLVD 221
>pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 26/206 (12%)
Query: 168 GINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227
GI F+G + S I DKS KNAG+ T ++ +A +PV +K
Sbjct: 116 GIPFVGCDIQSSAICMDKSLTYIVAKNAGIAT----PAFWVINKDDRPVAATFTYPVFVK 171
Query: 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287
G G++ DE ++ A+ + + +E+ V + VL +
Sbjct: 172 PARSGSSFGVKKVNSADELDYAIESARQY------DSKILIEQAVSGC-EVGCAVLGNSA 224
Query: 288 GNVVHFGERD-----CSIQRRNQKLLEEAPS-------PA-LTPELRKAMGDXXXXXXXS 334
VV GE D I R +Q++ E S PA L+ E R + + +
Sbjct: 225 ALVV--GEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKT 282
Query: 335 IGYIGVGTVEFLLDERGSFYFMEMNT 360
+G G+ V+ L + G E+NT
Sbjct: 283 LGCRGLARVDMFLQDNGRIVLNEVNT 308
>pdb|3V4Z|A Chain A, D-Alanine--D-Alanine Ligase From Yersinia Pestis
pdb|3V4Z|B Chain B, D-Alanine--D-Alanine Ligase From Yersinia Pestis
Length = 309
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 14/157 (8%)
Query: 209 STEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VY 267
S EE V +LG P+++K + G GM E LQ+A EA F +D V
Sbjct: 129 SPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASE----LQKALVEA---FQHDSDVL 181
Query: 268 LEKYVQNPRHIEFQVLADKYGNVVHFGE----RDCSIQRRNQKLLEEAPSPALTPELRKA 323
+EK++ P +L D+ + D + + K PS L+ E +
Sbjct: 182 IEKWLSGPE-FTVAILGDEVLPSIRIQPPGVFYDYDAKYLSDKTQYFCPS-GLSDESEQQ 239
Query: 324 MGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 360
+ ++ G G V+ + D G FY +E+NT
Sbjct: 240 LAALALQAYHALDCSGWGRVDVMQDRDGHFYLLEVNT 276
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
V+ R G+ GP + ++ G K+ ++ + +PT + E A+ E
Sbjct: 83 VDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQN--FTEVEPALAYLREK 140
Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG--VYLEKYVQNPRHI 278
G P++IKA G+G+ +A +E + A AFG+ G + +E+++
Sbjct: 141 GAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDML--AGNAFGDAGHRIVIEEFLDG-EEA 197
Query: 279 EFQVLAD 285
F V+ D
Sbjct: 198 SFIVMVD 204
>pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
Length = 367
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 102/267 (38%), Gaps = 24/267 (8%)
Query: 107 DALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP-GYGFLAENAVFVEMCR 165
D H+ L ++ + + P + LI N + ++ P +G L E+ R
Sbjct: 66 DPAHIALRPSAISLAQVPGKHQHQLI-NAQNGQPLPTVDVIFPIVHGTLGEDGSLQGXLR 124
Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD---ELGF 222
+ F+G + S DK A+ +++AG+ P L ++ A A+ LG
Sbjct: 125 VANLPFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFIT-LTRTNRHAFSFAEVESRLGL 183
Query: 223 PVMIKATAGGGGRGM-RLAKEPDEFVKLLQQAKSEAAAAFGND-GVYLEKYVQNPRHIEF 280
P+ +K G G+ ++A E Q + A AF D V +E+ ++ R IE
Sbjct: 184 PLFVKPANQGSSVGVSKVANEA--------QYQQAVALAFEFDHKVVVEQGIKG-REIEC 234
Query: 281 QVLADKYGNVVHFGE--RDCSIQRRNQKLLEEAPSPALTP-----ELRKAMGDXXXXXXX 333
VL + GE + + K +++ + + P E+ +
Sbjct: 235 AVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQ 294
Query: 334 SIGYIGVGTVEFLLDERGSFYFMEMNT 360
++G G V+ L E+NT
Sbjct: 295 TLGCAGXARVDVFLTADNEVVINEINT 321
>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
pdb|2IP4|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
Length = 417
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 167 HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI 226
G+ GP + I G K+ A+ + G+PT + + EA+ +E+G PV++
Sbjct: 84 RGLLLFGPTQKAAXIEGSKAFAKGLXERYGIPTA--RYRVFREPLEALAYLEEVGVPVVV 141
Query: 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAA 258
K + G+G+ +A + L QAK A
Sbjct: 142 KDSGLAAGKGVTVAFD-------LHQAKQAVA 166
>pdb|3SE7|A Chain A, Ancient Vana
pdb|3SE7|B Chain B, Ancient Vana
pdb|3SE7|C Chain C, Ancient Vana
pdb|3SE7|D Chain D, Ancient Vana
pdb|3SE7|E Chain E, Ancient Vana
pdb|3SE7|F Chain F, Ancient Vana
Length = 346
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 35/262 (13%)
Query: 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQST 210
+G L E+ + GI ++G + S + DKS ++AG+ T T
Sbjct: 99 HGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIAT----PNFWTVT 154
Query: 211 EEAVKLADELGFPVMIKATAGGGGRGM-RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 269
+ D+L +PV +K G G+ ++A+E D Q EAA + + V +E
Sbjct: 155 ADEKIPTDQLTYPVFVKPARSGSSFGVSKVAREED------LQGAVEAAREY-DSKVLIE 207
Query: 270 KYVQNPRHIEFQVLADKYGNVVHFGERD-CSIQRRNQKLLEEAPS-----------PA-L 316
+ V I V+ + G + GE D ++ K+ +E+ PA +
Sbjct: 208 EAVIG-TEIGCAVMGN--GPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPADI 264
Query: 317 TPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT----RIQVEHP---VT 369
+ R + D ++G G+ V+ L E G E+NT +P
Sbjct: 265 STTSRSLVQDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRYPRMMTA 324
Query: 370 EMISSVDLIEEQIHVAMGGKLR 391
+S D+I+ + +A+ GK R
Sbjct: 325 AGLSRADVIDRLVSLALAGKSR 346
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 149 PGYGFLAENAVFVEMCRE--HGINFIGPNPDSI----RIMGDKSTARETMKNAGV----- 197
PG G F +M E H ++ + +P S ++GDK+ E ++
Sbjct: 83 PGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPS 142
Query: 198 PTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
PT G+ ++T EA+ L + G+ +++ T G G +A D FV LL
Sbjct: 143 PTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLL 195
>pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
Length = 306
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 19/215 (8%)
Query: 156 ENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK 215
E+ M G+ + G + + DK ++ + AG+P P L E
Sbjct: 68 EDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA--LTRAEFEKG 125
Query: 216 LADE-------LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYL 268
L+D+ LG PV++K + G GM + L+ A ++ V +
Sbjct: 126 LSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH------DEEVLI 179
Query: 269 EKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAP--SPA-LTPELRKAMG 325
EK++ P +L ++ + + L +E PA L +
Sbjct: 180 EKWLSGP-EFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238
Query: 326 DXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 360
++G G G ++ +LD G FY +E NT
Sbjct: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANT 273
>pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 19/215 (8%)
Query: 156 ENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK 215
E+ M G+ + G + + DK ++ + AG+P P L E
Sbjct: 68 EDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA--LTRAEFEKG 125
Query: 216 LADE-------LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYL 268
L+D+ LG PV++K + G GM + L+ A ++ V +
Sbjct: 126 LSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH------DEEVLI 179
Query: 269 EKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAP--SPA-LTPELRKAMG 325
EK++ P +L ++ + + L +E PA L +
Sbjct: 180 EKWLSGP-EFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQ 238
Query: 326 DXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 360
++G G G ++ +LD G FY +E NT
Sbjct: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANT 273
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 165 REHGINFIGPNPDSIR----IMGDKS-TARETMK-NAGV---PTVPGSDGLLQSTEEAVK 215
R H + + +P S R I+GDK+ AR + NA + PT G+ ++T E V
Sbjct: 106 RGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVV 165
Query: 216 LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKL 249
L + GF V++ T G G + +A D FV L
Sbjct: 166 LLEAAGFDVILIETVGVGQSEVAVANMVDTFVLL 199
>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
Length = 431
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
V+ R G+ GP + ++ G K+ ++ + +P+ + E A+ +
Sbjct: 84 VDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQN--FTDVEAALAYVRQK 141
Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 265
G P++IKA G+G+ +A +E + A AFG+ G
Sbjct: 142 GAPIVIKADGLAAGKGVIVAXTQEEAETAVNDXL--AGNAFGDAG 184
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 334 SIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQI 382
++GY+GV VEF + E GSF EM R T + E+Q+
Sbjct: 276 TLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQV 324
>pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
Length = 377
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 20/159 (12%)
Query: 215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGND-GVYLEKYVQ 273
K+ ELG V +KA G G+ +E+ + L + F D V +E+ V
Sbjct: 168 KIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDS-------FQYDYKVLIEEAVN 220
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQ-------RRNQKLLEEAPS----PA-LTPELR 321
R +E V+ + V G Q N K ++ + PA L+PE+
Sbjct: 221 GARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVT 280
Query: 322 KAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 360
K + + G ++FLLDE Y E NT
Sbjct: 281 KEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNT 319
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 167 HGINFIGPNPDSIR----IMGDKS-TARETMK-NAGVPTVPGSD---GLLQSTEEAVKLA 217
H + + +P S+R I+GDK+ AR + +A V P S G+ ++T E + L
Sbjct: 85 HRVAVLAVDPSSVRSGGSILGDKTRMARLAVHPDAYVRPSPSSGTLGGVAKATRETIVLL 144
Query: 218 DELGFPVMIKATAGGGGRGMRLAKEPDEFVKL 249
+ GF V++ T G G + +A D FV L
Sbjct: 145 EAAGFDVVLVETVGVGQSEVTVADMVDTFVFL 176
>pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
Length = 319
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 83/225 (36%), Gaps = 29/225 (12%)
Query: 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG 205
+LH +G F+E+ G ++G + + DK ++ + AGVP VP
Sbjct: 80 LLHGRFGEDGTVQGFLELL---GKPYVGAGVAASALCXDKDLSKRVLAQAGVPVVP---- 132
Query: 206 LLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGND- 264
+ + P +K G G+ V+ Q ++ A AF D
Sbjct: 133 -WVAVRKGEPPVVPFDPPFFVKPANTGSSVGISR-------VERFQDLEAALALAFRYDE 184
Query: 265 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGE---------RDCSIQRRNQKLLEEAPSPA 315
+EK + R +E VL + +G GE + +LL AP
Sbjct: 185 KAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP--- 241
Query: 316 LTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 360
L P ++ + + +G G V+F L E G Y E+NT
Sbjct: 242 LDPGTQETVQELALKAYKVLGVRGXARVDFFLAE-GELYLNELNT 285
>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia
Thailandensis
Length = 419
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 308 LEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTR 361
L P+PA + L + S+ Y+GV VEF + E GS EM R
Sbjct: 250 LSVVPAPAASDALVRDAQQAAARIADSLDYVGVLCVEFFVLEDGSLVANEMAPR 303
>pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
And D-Alanine:d-Alanine From Thermus Thermophius Hb8
pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
And D-Alanine:d-Alanine From Thermus Thermophius Hb8
Length = 319
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 29/225 (12%)
Query: 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG 205
+LH +G F+E+ G ++G + + DK ++ + AGVP VP
Sbjct: 80 LLHGRFGEDGTVQGFLELL---GKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVP---- 132
Query: 206 LLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGND- 264
+ + P +K G G+ V+ Q ++ A AF D
Sbjct: 133 -WVAVRKGEPPVVPFDPPFFVKPANTGSSVGISR-------VERFQDLEAALALAFRYDE 184
Query: 265 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGE---------RDCSIQRRNQKLLEEAPSPA 315
+EK + R +E VL + +G GE + +LL AP
Sbjct: 185 KAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP--- 241
Query: 316 LTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 360
L P ++ + + +G G+ V+F L E G Y E+NT
Sbjct: 242 LDPGTQETVQELALKAYKVLGVRGMARVDFFLAE-GELYLNELNT 285
>pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-alanine: D-alanine
Ligase (ddl) From Thermus Caldophilus: A Basis For The
Substrate-induced Conformational Changes
Length = 322
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 29/225 (12%)
Query: 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG 205
+LH +G F+E+ G ++G + + DK ++ + AGVP VP
Sbjct: 83 LLHGRFGEDGTVQGFLELL---GKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVP---- 135
Query: 206 LLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGND- 264
+ + P +K G G+ V+ Q ++ A AF D
Sbjct: 136 -WVAVRKGEPPVVPFDPPFFVKPANTGSSVGISR-------VERFQDLEAALALAFRYDE 187
Query: 265 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGE---------RDCSIQRRNQKLLEEAPSPA 315
+EK + R +E VL + +G GE + +LL AP
Sbjct: 188 KAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP--- 244
Query: 316 LTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 360
L P ++ + + +G G+ V+F L E G Y E+NT
Sbjct: 245 LDPGTQETVQELALKAYKVLGVRGMARVDFFLAE-GELYLNELNT 288
>pdb|1TUE|B Chain B, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|E Chain E, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|G Chain G, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|J Chain J, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|L Chain L, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|Q Chain Q, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
Length = 218
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 256 EAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV----VHFGER--DCS 299
+ A + G+Y K N +IEF+ +KYGN VHFG DC+
Sbjct: 155 KTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVIDCN 204
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
Length = 238
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227
A++ +K G+P VP + L ++ +EA++ A E+G+PV++K
Sbjct: 25 AKQVLKAYGLP-VP-EEKLAKTLDEALEYAKEIGYPVVLK 62
>pdb|1QQH|A Chain A, 2.1 A Crystal Structure Of The Human Papillomavirus Type
18 E2 Activation Domain
Length = 144
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 256 EAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV----VHFGER--DCS 299
+ A + G+Y K N +IEF+ +KYGN VHFG DC+
Sbjct: 83 KTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVIDCN 132
>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
Length = 203
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 99 AVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA--AISRGCTMLHPGYGFLAE 156
A+Y TI H+K +++CIG A S S+LL A+ M+H G
Sbjct: 76 AIYDTIQ----HIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG 131
Query: 157 NAVFVEMCREH 167
A +E+ H
Sbjct: 132 QATEIEIAANH 142
>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
Length = 197
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 99 AVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA--AISRGCTMLHPGYGFLAE 156
A+Y TI H+K +++CIG A S S+LL A+ M+H G
Sbjct: 78 AIYDTIQ----HIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG 133
Query: 157 NAVFVEMCREH 167
A +E+ H
Sbjct: 134 QATEIEIAANH 144
>pdb|3QC0|A Chain A, Crystal Structure Of A Sugar Isomerase (Smc04130) From
Sinorhizobium Meliloti 1021 At 1.45 A Resolution
Length = 275
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTAR----ETMKNAGV--------PTVPGSDGLLQ 208
V++C +HGI I P D + +G R +K G+ P G + +
Sbjct: 24 VDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAID 83
Query: 209 STEEAVKLADELGFPVMIKATAG--GGGRGMRLAK 241
AV A ELG ++ G GG + + A+
Sbjct: 84 DNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAAR 118
>pdb|3E9A|A Chain A, Crystal Structure Of 2-dehydro-3-deoxyphosphooctonate
Aldolase From Vibrio Cholerae O1 Biovar Eltor Str.
N16961
Length = 286
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 195 AGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR-------------GMRLAK 241
AG+ + D +Q E VK+ D+LG P + KA+ R GM++ +
Sbjct: 26 AGMNVLESRDLAMQICEHYVKVTDKLGIPYVFKASFDKANRSSVHSYRGPGLEEGMKIFQ 85
Query: 242 EPDEF--VKLLQQAKSEAAA 259
E E VK++ +EA A
Sbjct: 86 ELKETFGVKIITDVHTEAQA 105
>pdb|3FMS|A Chain A, Crystal Structure Of Tm0439, A Gntr Transcriptional
Regulator
Length = 209
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 182 MGDKSTARETMKNAGVPTVPGSDGLLQS-TEEAVKLADELGFPV 224
+G+K RE + G+ P D LLQ TE VK+ +GF V
Sbjct: 23 LGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFV 66
>pdb|3JU2|A Chain A, Crystal Structure Of Protein Smc04130 From Sinorhizobium
Meliloti 1021
Length = 284
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTAR----ETMKNAGV--------PTVPGSDGLLQ 208
V++C +HGI I P D + +G R +K G+ P G + +
Sbjct: 25 VDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAID 84
Query: 209 STEEAVKLADELGFPVMIKATAG--GGGRGMRLAK 241
AV A ELG ++ G GG + + A+
Sbjct: 85 DNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAAR 119
>pdb|3SXY|A Chain A, Metal-Free Full-Length Structure Of Tm0439, A
Metal-Binding Fcd Family Transcriptional Regulator
pdb|3SXY|B Chain B, Metal-Free Full-Length Structure Of Tm0439, A
Metal-Binding Fcd Family Transcriptional Regulator
Length = 218
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 182 MGDKSTARETMKNAGVPTVPGSDGLLQS-TEEAVKLADELGFPV 224
+G+K RE + G+ P D LLQ TE VK+ +GF V
Sbjct: 32 LGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFV 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,784,143
Number of Sequences: 62578
Number of extensions: 612130
Number of successful extensions: 1713
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 113
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)