Query 009903
Match_columns 523
No_of_seqs 248 out of 2752
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 3.7E-85 8.1E-90 656.8 41.5 449 70-518 1-449 (645)
2 KOG0238 3-Methylcrotonyl-CoA c 100.0 1E-82 2.2E-87 628.5 39.9 447 74-520 1-448 (670)
3 PRK08654 pyruvate carboxylase 100.0 6.3E-75 1.4E-79 614.4 55.2 446 70-517 1-446 (499)
4 PRK07178 pyruvate carboxylase 100.0 1.1E-72 2.4E-77 597.5 55.2 446 70-517 1-446 (472)
5 PRK12833 acetyl-CoA carboxylas 100.0 1.6E-72 3.5E-77 595.5 54.5 448 69-517 3-451 (467)
6 COG0439 AccC Biotin carboxylas 100.0 4.9E-73 1.1E-77 580.0 48.4 447 70-516 1-447 (449)
7 PRK08463 acetyl-CoA carboxylas 100.0 4.3E-72 9.3E-77 593.4 53.9 448 70-518 1-449 (478)
8 TIGR00514 accC acetyl-CoA carb 100.0 5.2E-71 1.1E-75 583.3 54.2 446 70-515 1-446 (449)
9 PRK05586 biotin carboxylase; V 100.0 8.1E-71 1.8E-75 581.2 53.0 446 70-515 1-446 (447)
10 COG1038 PycA Pyruvate carboxyl 100.0 1.4E-70 3E-75 565.8 46.4 452 69-520 5-464 (1149)
11 PRK08591 acetyl-CoA carboxylas 100.0 1.6E-68 3.4E-73 565.9 53.3 446 70-515 1-446 (451)
12 TIGR01235 pyruv_carbox pyruvat 100.0 1.1E-68 2.5E-73 605.1 51.1 444 73-517 1-454 (1143)
13 PRK08462 biotin carboxylase; V 100.0 6.5E-68 1.4E-72 559.8 53.4 442 71-514 4-445 (445)
14 PRK12999 pyruvate carboxylase; 100.0 1.6E-67 3.5E-72 599.0 54.9 448 69-517 3-458 (1146)
15 PRK06111 acetyl-CoA carboxylas 100.0 4.6E-62 1E-66 516.8 53.0 444 70-514 1-444 (450)
16 KOG0369 Pyruvate carboxylase [ 100.0 4.7E-63 1E-67 500.6 41.1 446 71-516 33-483 (1176)
17 TIGR02712 urea_carbox urea car 100.0 8.3E-62 1.8E-66 555.3 54.1 439 71-512 1-442 (1201)
18 KOG0368 Acetyl-CoA carboxylase 100.0 5.4E-47 1.2E-51 408.5 36.8 444 69-516 52-553 (2196)
19 TIGR01142 purT phosphoribosylg 100.0 8.5E-45 1.8E-49 376.7 44.9 375 73-482 1-380 (380)
20 PRK06019 phosphoribosylaminoim 100.0 5.9E-44 1.3E-48 367.9 43.1 364 71-477 2-366 (372)
21 PLN02948 phosphoribosylaminoim 100.0 6E-44 1.3E-48 383.1 43.6 381 69-482 20-402 (577)
22 PRK09288 purT phosphoribosylgl 100.0 4.8E-43 1E-47 365.4 44.5 382 70-483 11-394 (395)
23 PLN02735 carbamoyl-phosphate s 100.0 4.9E-43 1.1E-47 399.7 44.3 378 70-478 22-420 (1102)
24 PRK07206 hypothetical protein; 100.0 3.9E-43 8.4E-48 368.5 39.6 384 70-477 1-406 (416)
25 TIGR01369 CPSaseII_lrg carbamo 100.0 6.8E-42 1.5E-46 391.9 45.5 376 70-478 5-401 (1050)
26 PRK02186 argininosuccinate lya 100.0 1.2E-41 2.7E-46 385.1 43.6 380 70-482 1-395 (887)
27 TIGR01161 purK phosphoribosyla 100.0 2.1E-41 4.6E-46 347.2 40.2 351 73-464 1-352 (352)
28 PLN02735 carbamoyl-phosphate s 100.0 2.6E-41 5.6E-46 385.5 39.7 308 70-391 573-905 (1102)
29 PRK12815 carB carbamoyl phosph 100.0 1.3E-40 2.8E-45 381.4 44.4 376 69-478 5-402 (1068)
30 PRK00885 phosphoribosylamine-- 100.0 2.7E-40 5.9E-45 346.8 42.0 395 72-489 1-412 (420)
31 PRK05294 carB carbamoyl phosph 100.0 2.5E-40 5.3E-45 380.5 45.0 397 69-498 5-428 (1066)
32 PRK13789 phosphoribosylamine-- 100.0 1.5E-39 3.2E-44 338.9 43.0 395 71-487 4-418 (426)
33 TIGR00877 purD phosphoribosyla 100.0 1.3E-39 2.9E-44 342.3 42.9 393 72-486 1-413 (423)
34 PRK06395 phosphoribosylamine-- 100.0 1.6E-39 3.4E-44 339.6 41.5 391 70-485 1-412 (435)
35 COG0026 PurK Phosphoribosylami 100.0 5.7E-39 1.2E-43 313.6 38.6 367 71-479 1-368 (375)
36 TIGR01369 CPSaseII_lrg carbamo 100.0 1E-38 2.2E-43 365.8 41.3 364 71-477 554-931 (1050)
37 PLN02257 phosphoribosylamine-- 100.0 7.7E-38 1.7E-42 326.1 42.9 395 75-491 1-421 (434)
38 PRK12815 carB carbamoyl phosph 100.0 1.3E-38 2.8E-43 365.0 39.4 364 70-477 554-931 (1068)
39 PRK05294 carB carbamoyl phosph 100.0 1.2E-38 2.7E-43 366.5 39.4 364 70-476 553-930 (1066)
40 COG0458 CarB Carbamoylphosphat 100.0 3.7E-38 8E-43 311.6 36.1 374 73-478 7-389 (400)
41 PRK05784 phosphoribosylamine-- 100.0 3.5E-37 7.5E-42 324.1 43.0 397 72-487 1-438 (486)
42 COG0027 PurT Formate-dependent 100.0 8.2E-38 1.8E-42 294.4 34.0 382 70-482 11-393 (394)
43 PRK13790 phosphoribosylamine-- 100.0 4.9E-37 1.1E-41 316.6 36.7 339 128-490 12-371 (379)
44 PRK12767 carbamoyl phosphate s 100.0 3.1E-37 6.7E-42 313.5 33.1 295 71-393 1-300 (326)
45 PF02786 CPSase_L_D2: Carbamoy 100.0 3.7E-36 8.1E-41 283.0 23.8 208 184-391 1-209 (211)
46 COG0151 PurD Phosphoribosylami 100.0 7.8E-34 1.7E-38 281.4 37.2 395 72-489 1-417 (428)
47 PRK14569 D-alanyl-alanine synt 100.0 3E-33 6.5E-38 279.4 30.3 273 71-385 3-292 (296)
48 PF15632 ATPgrasp_Ter: ATP-gra 100.0 5.7E-33 1.2E-37 275.3 28.6 291 79-393 7-311 (329)
49 PRK06849 hypothetical protein; 100.0 5E-33 1.1E-37 289.1 28.5 279 71-370 4-284 (389)
50 PRK01966 ddl D-alanyl-alanine 100.0 3.8E-33 8.1E-38 283.3 26.8 299 70-384 2-327 (333)
51 PRK01372 ddl D-alanine--D-alan 100.0 2.7E-32 5.9E-37 274.4 30.4 277 69-384 2-296 (304)
52 PRK14568 vanB D-alanine--D-lac 100.0 5.8E-32 1.3E-36 275.8 27.2 292 71-383 3-335 (343)
53 PRK14572 D-alanyl-alanine synt 100.0 1.4E-31 3E-36 273.2 29.6 302 72-384 2-341 (347)
54 TIGR01205 D_ala_D_alaTIGR D-al 100.0 1.2E-31 2.6E-36 271.1 28.7 275 82-385 19-312 (315)
55 PRK06524 biotin carboxylase-li 100.0 3.2E-31 7E-36 273.1 29.7 253 134-398 95-363 (493)
56 PRK14570 D-alanyl-alanine synt 100.0 4.9E-31 1.1E-35 269.2 27.6 302 70-384 1-342 (364)
57 PRK14571 D-alanyl-alanine synt 100.0 1.2E-29 2.6E-34 254.3 29.9 256 82-381 20-288 (299)
58 PRK14573 bifunctional D-alanyl 100.0 1E-28 2.2E-33 278.3 31.6 300 70-384 450-782 (809)
59 COG2232 Predicted ATP-dependen 100.0 2.6E-28 5.6E-33 232.0 26.3 351 71-480 11-373 (389)
60 KOG0370 Multifunctional pyrimi 100.0 2.1E-28 4.6E-33 256.9 26.6 307 71-394 918-1237(1435)
61 KOG0237 Glycinamide ribonucleo 100.0 5.7E-26 1.2E-30 229.4 33.5 406 70-493 1-425 (788)
62 KOG0370 Multifunctional pyrimi 100.0 7.7E-29 1.7E-33 260.2 13.0 384 68-485 374-776 (1435)
63 PRK10446 ribosomal protein S6 100.0 1.4E-26 3.1E-31 232.1 26.2 276 73-388 2-289 (300)
64 PRK13278 purP 5-formaminoimida 100.0 5.9E-26 1.3E-30 228.8 29.5 270 73-365 20-315 (358)
65 PF13535 ATP-grasp_4: ATP-gras 100.0 6.9E-27 1.5E-31 217.3 19.7 179 181-366 1-183 (184)
66 TIGR00768 rimK_fam alpha-L-glu 99.9 8.2E-26 1.8E-30 224.2 26.6 271 74-384 2-276 (277)
67 PRK13277 5-formaminoimidazole- 99.9 3.3E-25 7.1E-30 219.5 28.8 295 72-391 18-349 (366)
68 TIGR02144 LysX_arch Lysine bio 99.9 5.5E-25 1.2E-29 218.8 26.6 266 81-387 10-277 (280)
69 COG1181 DdlA D-alanine-D-alani 99.9 1.6E-23 3.5E-28 208.3 27.0 269 83-384 23-312 (317)
70 PF02222 ATP-grasp: ATP-grasp 99.9 1.4E-23 3E-28 190.6 18.3 166 192-369 1-168 (172)
71 PF07478 Dala_Dala_lig_C: D-al 99.9 1.6E-23 3.4E-28 196.9 16.6 184 191-384 1-201 (203)
72 COG0189 RimK Glutathione synth 99.9 1.4E-21 3E-26 195.0 23.6 287 81-385 17-311 (318)
73 COG3919 Predicted ATP-grasp en 99.9 3.6E-22 7.9E-27 187.2 15.4 293 73-389 5-314 (415)
74 PF02785 Biotin_carb_C: Biotin 99.9 1.2E-22 2.7E-27 168.5 8.8 106 405-510 1-106 (107)
75 PF01071 GARS_A: Phosphoribosy 99.9 2.4E-21 5.2E-26 177.5 18.0 173 184-363 2-190 (194)
76 TIGR03103 trio_acet_GNAT GNAT- 99.9 1.5E-20 3.2E-25 201.7 22.9 245 115-386 227-541 (547)
77 PF02655 ATP-grasp_3: ATP-gras 99.9 5.5E-22 1.2E-26 180.1 9.5 157 182-365 1-161 (161)
78 smart00878 Biotin_carb_C Bioti 99.9 1.6E-21 3.6E-26 162.2 10.8 107 405-511 1-107 (107)
79 PF08443 RimK: RimK-like ATP-g 99.8 1.2E-20 2.5E-25 176.4 14.2 183 182-384 1-189 (190)
80 PRK14016 cyanophycin synthetas 99.8 2.9E-19 6.3E-24 197.8 25.3 254 103-386 141-472 (727)
81 PRK12458 glutathione synthetas 99.8 5.3E-18 1.1E-22 171.9 24.5 283 80-387 10-323 (338)
82 COG1821 Predicted ATP-utilizin 99.8 2.5E-18 5.3E-23 158.6 19.7 253 84-390 28-284 (307)
83 TIGR01380 glut_syn glutathione 99.8 1.4E-16 3.1E-21 160.2 23.3 275 82-385 19-308 (312)
84 PRK05246 glutathione synthetas 99.7 1.9E-16 4.1E-21 159.8 23.2 277 82-387 20-311 (316)
85 TIGR02068 cya_phycin_syn cyano 99.7 2.4E-16 5.2E-21 178.0 22.7 200 174-386 203-471 (864)
86 PRK02471 bifunctional glutamat 99.7 3.7E-16 7.9E-21 172.6 23.4 199 174-385 478-750 (752)
87 PF00289 CPSase_L_chain: Carba 99.7 1.9E-17 4.1E-22 139.1 9.8 110 70-179 1-110 (110)
88 TIGR01435 glu_cys_lig_rel glut 99.7 2.7E-16 5.9E-21 170.9 20.5 199 174-385 465-736 (737)
89 PLN02941 inositol-tetrakisphos 99.7 3E-15 6.4E-20 149.2 22.6 228 83-363 38-305 (328)
90 COG1759 5-formaminoimidazole-4 99.7 2.6E-14 5.7E-19 136.4 22.7 271 72-366 19-319 (361)
91 TIGR02291 rimK_rel_E_lig alpha 99.6 6.6E-14 1.4E-18 138.6 18.9 207 173-388 26-295 (317)
92 PF14398 ATPgrasp_YheCD: YheC/ 99.3 2.7E-10 5.9E-15 111.5 19.4 185 163-363 3-234 (262)
93 PF14397 ATPgrasp_ST: Sugar-tr 99.2 9.5E-10 2E-14 108.9 18.4 182 174-362 16-258 (285)
94 TIGR01016 sucCoAbeta succinyl- 99.1 5.1E-09 1.1E-13 108.7 19.4 177 184-362 4-218 (386)
95 PRK00696 sucC succinyl-CoA syn 99.1 4.9E-09 1.1E-13 109.0 19.2 108 184-293 4-124 (388)
96 PF02955 GSH-S_ATP: Prokaryoti 98.8 6.7E-09 1.4E-13 94.4 7.3 147 199-365 12-165 (173)
97 PF13549 ATP-grasp_5: ATP-gras 98.7 1.1E-07 2.3E-12 90.3 11.5 173 184-362 11-207 (222)
98 PRK14046 malate--CoA ligase su 98.5 8.9E-06 1.9E-10 84.2 18.3 108 185-294 5-125 (392)
99 PF05770 Ins134_P3_kin: Inosit 98.5 2.6E-06 5.7E-11 84.3 13.6 174 168-363 78-290 (307)
100 PLN00124 succinyl-CoA ligase [ 98.4 1.1E-05 2.4E-10 83.8 17.9 107 183-292 30-159 (422)
101 COG0045 SucC Succinyl-CoA synt 98.4 1.9E-06 4.1E-11 86.0 11.6 107 185-293 5-121 (387)
102 PF02750 Synapsin_C: Synapsin, 98.4 6.9E-06 1.5E-10 74.4 12.6 167 174-361 1-177 (203)
103 PF14305 ATPgrasp_TupA: TupA-l 98.3 2.5E-05 5.5E-10 75.3 16.0 178 177-365 13-221 (239)
104 PF08442 ATP-grasp_2: ATP-gras 98.3 1.2E-06 2.6E-11 81.9 6.6 103 185-289 4-118 (202)
105 PLN02235 ATP citrate (pro-S)-l 98.2 5.7E-05 1.2E-09 77.6 17.8 106 185-293 8-132 (423)
106 PF02844 GARS_N: Phosphoribosy 98.2 1.1E-05 2.4E-10 65.9 10.2 97 72-181 1-99 (100)
107 KOG3895 Synaptic vesicle prote 97.9 6.8E-05 1.5E-09 73.2 8.9 202 140-361 152-366 (488)
108 PF03133 TTL: Tubulin-tyrosine 97.7 0.00021 4.4E-09 71.5 10.8 42 223-273 67-108 (292)
109 PF06849 DUF1246: Protein of u 97.6 7.9E-05 1.7E-09 62.4 4.5 114 79-202 5-122 (124)
110 PF06973 DUF1297: Domain of un 97.5 0.00078 1.7E-08 60.5 9.5 100 264-365 21-145 (188)
111 PF14403 CP_ATPgrasp_2: Circul 97.2 0.0037 8E-08 65.2 12.5 175 69-274 183-385 (445)
112 PRK08057 cobalt-precorrin-6x r 96.7 0.015 3.3E-07 56.3 11.2 94 70-172 1-96 (248)
113 COG2099 CobK Precorrin-6x redu 96.6 0.025 5.4E-07 54.0 11.4 124 70-221 1-128 (257)
114 PF14243 DUF4343: Domain of un 96.6 0.025 5.4E-07 49.1 10.3 115 222-363 2-117 (130)
115 TIGR00715 precor6x_red precorr 96.5 0.019 4.2E-07 55.9 10.3 94 72-172 1-96 (256)
116 COG1748 LYS9 Saccharopine dehy 96.0 0.026 5.5E-07 58.0 8.6 118 71-202 1-122 (389)
117 PF13380 CoA_binding_2: CoA bi 95.9 0.015 3.3E-07 49.5 5.5 98 72-177 1-111 (116)
118 COG1064 AdhP Zn-dependent alco 95.6 0.076 1.7E-06 53.5 9.6 160 68-255 164-326 (339)
119 PF11379 DUF3182: Protein of u 95.5 0.13 2.9E-06 50.9 10.7 90 205-298 118-209 (355)
120 PF02571 CbiJ: Precorrin-6x re 95.3 0.12 2.5E-06 50.3 9.7 94 72-172 1-97 (249)
121 COG0569 TrkA K+ transport syst 95.2 0.048 1E-06 52.2 6.7 110 72-196 1-113 (225)
122 COG1087 GalE UDP-glucose 4-epi 95.1 0.1 2.2E-06 51.2 8.3 71 72-149 1-73 (329)
123 CHL00194 ycf39 Ycf39; Provisio 94.8 0.19 4.1E-06 50.7 10.2 70 72-150 1-71 (317)
124 KOG1057 Arp2/3 complex-interac 94.6 0.16 3.4E-06 55.2 9.0 202 144-361 91-322 (1018)
125 PLN00016 RNA-binding protein; 94.5 0.19 4.2E-06 52.0 9.7 98 67-172 48-161 (378)
126 TIGR02964 xanthine_xdhC xanthi 94.2 0.21 4.5E-06 48.5 8.4 36 70-105 99-134 (246)
127 PRK03659 glutathione-regulated 94.1 0.063 1.4E-06 59.3 5.1 115 71-199 400-514 (601)
128 KOG2156 Tubulin-tyrosine ligas 93.9 0.39 8.4E-06 50.2 9.8 59 200-273 284-343 (662)
129 TIGR01470 cysG_Nterm siroheme 93.8 0.18 3.9E-06 47.5 6.8 33 71-103 9-41 (205)
130 PF05368 NmrA: NmrA-like famil 93.6 0.42 9.2E-06 45.7 9.3 117 74-199 1-137 (233)
131 PLN02819 lysine-ketoglutarate 93.5 0.42 9.2E-06 55.4 10.4 146 69-232 567-737 (1042)
132 KOG2157 Predicted tubulin-tyro 93.4 0.5 1.1E-05 50.2 10.0 52 221-274 199-251 (497)
133 PF04321 RmlD_sub_bind: RmlD s 93.3 0.18 3.9E-06 50.2 6.3 58 72-151 1-59 (286)
134 PF13241 NAD_binding_7: Putati 93.2 0.11 2.4E-06 43.1 3.9 83 71-172 7-89 (103)
135 PRK10669 putative cation:proto 93.2 0.18 4E-06 55.2 6.7 116 69-198 415-530 (558)
136 PRK06719 precorrin-2 dehydroge 93.1 0.45 9.7E-06 42.8 8.0 31 71-101 13-43 (157)
137 PRK05849 hypothetical protein; 93.1 5.7 0.00012 45.0 18.1 177 181-360 7-214 (783)
138 PRK04148 hypothetical protein; 93.1 0.2 4.3E-06 43.6 5.3 34 71-105 17-50 (134)
139 PRK03562 glutathione-regulated 93.0 0.14 3.1E-06 56.7 5.6 137 71-223 400-537 (621)
140 PF01820 Dala_Dala_lig_N: D-al 93.0 0.018 3.8E-07 49.1 -1.2 89 82-174 20-117 (117)
141 COG2910 Putative NADH-flavin r 92.9 0.58 1.2E-05 42.7 8.2 72 72-154 1-73 (211)
142 PF02254 TrkA_N: TrkA-N domain 92.9 0.18 3.9E-06 42.5 4.9 85 74-166 1-85 (116)
143 PLN02657 3,8-divinyl protochlo 92.5 1.2 2.7E-05 46.3 11.5 75 70-151 59-144 (390)
144 PF13478 XdhC_C: XdhC Rossmann 92.5 0.29 6.2E-06 42.9 5.6 96 74-185 1-99 (136)
145 KOG2799 Succinyl-CoA synthetas 92.2 0.65 1.4E-05 46.4 8.2 70 183-254 25-106 (434)
146 PF00070 Pyr_redox: Pyridine n 92.1 0.37 8E-06 37.7 5.4 59 73-148 1-59 (80)
147 PF13460 NAD_binding_10: NADH( 92.1 1 2.2E-05 41.0 9.3 67 74-151 1-68 (183)
148 PRK05993 short chain dehydroge 92.0 0.53 1.2E-05 46.3 7.8 34 70-103 3-37 (277)
149 PRK06718 precorrin-2 dehydroge 92.0 0.58 1.3E-05 44.0 7.5 32 71-102 10-41 (202)
150 PRK13303 L-aspartate dehydroge 91.6 1 2.2E-05 44.2 9.1 113 72-198 2-115 (265)
151 COG0771 MurD UDP-N-acetylmuram 91.6 0.54 1.2E-05 49.5 7.3 98 71-181 7-105 (448)
152 PRK12475 thiamine/molybdopteri 91.5 0.75 1.6E-05 46.9 8.2 122 69-200 22-145 (338)
153 PRK10537 voltage-gated potassi 91.5 0.56 1.2E-05 48.8 7.4 112 71-198 240-351 (393)
154 PRK08177 short chain dehydroge 91.4 0.61 1.3E-05 44.2 7.2 75 71-152 1-80 (225)
155 PRK06988 putative formyltransf 91.3 0.64 1.4E-05 46.8 7.5 36 70-105 1-36 (312)
156 PLN02695 GDP-D-mannose-3',5'-e 91.2 0.86 1.9E-05 47.1 8.6 71 71-150 21-92 (370)
157 PRK05693 short chain dehydroge 91.1 0.66 1.4E-05 45.5 7.3 75 71-152 1-81 (274)
158 COG1832 Predicted CoA-binding 91.0 0.64 1.4E-05 40.2 6.0 100 71-172 16-124 (140)
159 cd01483 E1_enzyme_family Super 90.5 1.5 3.2E-05 38.5 8.2 29 73-101 1-30 (143)
160 PRK08017 oxidoreductase; Provi 90.4 1.1 2.4E-05 43.2 8.0 34 70-103 1-35 (256)
161 PRK01368 murD UDP-N-acetylmura 90.4 3.2 6.9E-05 44.2 12.1 93 69-178 4-96 (454)
162 PF07065 D123: D123; InterPro 90.3 9.7 0.00021 38.0 14.6 141 211-363 75-240 (299)
163 PRK10217 dTDP-glucose 4,6-dehy 90.3 1.3 2.8E-05 45.2 8.9 74 71-151 1-82 (355)
164 PRK05472 redox-sensing transcr 90.1 2.3 4.9E-05 40.3 9.7 89 71-172 84-174 (213)
165 PRK12446 undecaprenyldiphospho 90.1 1.2 2.6E-05 45.8 8.3 100 71-172 1-118 (352)
166 PRK05562 precorrin-2 dehydroge 90.0 1.4 3.1E-05 41.9 8.1 33 71-103 25-57 (223)
167 PLN02572 UDP-sulfoquinovose sy 89.9 2.2 4.7E-05 45.3 10.4 34 68-101 44-78 (442)
168 PF00899 ThiF: ThiF family; I 89.8 0.86 1.9E-05 39.7 6.0 31 71-101 2-33 (135)
169 COG2102 Predicted ATPases of P 89.7 12 0.00025 35.4 13.5 142 72-231 2-145 (223)
170 TIGR03466 HpnA hopanoid-associ 89.6 1.3 2.8E-05 44.4 8.1 69 72-149 1-70 (328)
171 TIGR02622 CDP_4_6_dhtase CDP-g 89.6 1.4 3.1E-05 44.9 8.4 76 71-151 4-83 (349)
172 TIGR02356 adenyl_thiF thiazole 89.5 2.1 4.6E-05 40.2 8.9 32 70-101 20-52 (202)
173 PLN02653 GDP-mannose 4,6-dehyd 89.4 1.9 4E-05 43.8 9.2 74 70-150 5-90 (340)
174 PRK09496 trkA potassium transp 89.4 1 2.2E-05 47.9 7.4 77 69-152 229-306 (453)
175 TIGR02355 moeB molybdopterin s 89.3 5.2 0.00011 38.7 11.6 74 70-148 23-96 (240)
176 COG1091 RfbD dTDP-4-dehydrorha 89.3 1.7 3.7E-05 42.8 8.2 56 73-151 2-58 (281)
177 PRK05565 fabG 3-ketoacyl-(acyl 89.3 0.83 1.8E-05 43.7 6.1 33 70-102 4-38 (247)
178 PF01370 Epimerase: NAD depend 89.1 1.2 2.7E-05 42.1 7.2 71 74-151 1-73 (236)
179 COG0300 DltE Short-chain dehyd 88.9 1.7 3.7E-05 42.5 7.9 82 69-152 4-93 (265)
180 PRK08267 short chain dehydroge 88.8 1.3 2.8E-05 43.0 7.2 33 71-103 1-34 (260)
181 PRK06182 short chain dehydroge 88.7 1.4 3E-05 43.1 7.4 75 71-152 3-83 (273)
182 PLN02778 3,5-epimerase/4-reduc 88.6 1.9 4E-05 43.2 8.3 57 68-149 6-63 (298)
183 cd01075 NAD_bind_Leu_Phe_Val_D 88.6 3.9 8.4E-05 38.3 9.9 109 70-201 27-137 (200)
184 TIGR03649 ergot_EASG ergot alk 88.5 3.6 7.8E-05 40.5 10.2 68 73-150 1-74 (285)
185 PF03435 Saccharop_dh: Sacchar 88.4 1.2 2.7E-05 46.2 7.1 114 74-201 1-120 (386)
186 PRK13302 putative L-aspartate 88.4 2.4 5.3E-05 41.7 8.8 111 71-198 6-118 (271)
187 TIGR03025 EPS_sugtrans exopoly 88.3 2.9 6.3E-05 44.3 10.0 89 71-171 125-218 (445)
188 PF01113 DapB_N: Dihydrodipico 88.3 1.2 2.6E-05 38.2 5.8 31 72-102 1-33 (124)
189 TIGR01472 gmd GDP-mannose 4,6- 88.3 1.9 4.1E-05 43.8 8.3 71 72-149 1-84 (343)
190 PRK06179 short chain dehydroge 88.2 2.8 6E-05 40.9 9.1 73 71-152 4-82 (270)
191 PRK06940 short chain dehydroge 88.1 2.1 4.6E-05 42.1 8.3 33 70-103 1-33 (275)
192 PF01408 GFO_IDH_MocA: Oxidore 88.1 1.6 3.4E-05 36.8 6.4 87 73-172 2-90 (120)
193 PRK09987 dTDP-4-dehydrorhamnos 88.1 1.6 3.5E-05 43.5 7.5 59 72-149 1-60 (299)
194 PRK06398 aldose dehydrogenase; 88.1 3.9 8.6E-05 39.6 10.1 33 71-103 6-39 (258)
195 TIGR02717 AcCoA-syn-alpha acet 88.0 4.2 9.1E-05 43.2 10.9 109 71-185 7-138 (447)
196 PRK12828 short chain dehydroge 88.0 2 4.3E-05 40.7 7.8 34 71-104 7-41 (239)
197 PRK00141 murD UDP-N-acetylmura 87.9 2.2 4.9E-05 45.6 8.9 86 71-173 15-103 (473)
198 PRK01438 murD UDP-N-acetylmura 87.9 1.4 3E-05 47.2 7.3 92 71-178 16-111 (480)
199 PRK06483 dihydromonapterin red 87.9 2.3 4.9E-05 40.5 8.1 34 70-103 1-35 (236)
200 COG1648 CysG Siroheme synthase 87.8 1.1 2.4E-05 42.3 5.7 33 71-103 12-44 (210)
201 cd03466 Nitrogenase_NifN_2 Nit 87.8 3.1 6.7E-05 44.0 9.6 89 70-172 299-394 (429)
202 PRK12829 short chain dehydroge 87.7 1.4 3E-05 42.7 6.6 77 69-152 9-95 (264)
203 PRK07231 fabG 3-ketoacyl-(acyl 87.6 1.7 3.6E-05 41.7 7.1 75 71-152 5-90 (251)
204 PRK08643 acetoin reductase; Va 87.6 1.7 3.6E-05 42.0 7.1 34 70-103 1-35 (256)
205 cd00757 ThiF_MoeB_HesA_family 87.6 2.5 5.3E-05 40.5 8.1 122 69-201 19-141 (228)
206 PRK09496 trkA potassium transp 87.6 1.3 2.7E-05 47.1 6.7 34 72-105 1-34 (453)
207 PRK08264 short chain dehydroge 87.6 3.3 7.1E-05 39.4 9.0 74 71-152 6-82 (238)
208 PRK14106 murD UDP-N-acetylmura 87.6 1.3 2.7E-05 47.1 6.7 87 71-172 5-96 (450)
209 PRK07577 short chain dehydroge 87.4 3.2 7E-05 39.3 8.8 70 71-152 3-77 (234)
210 PRK05690 molybdopterin biosynt 87.3 4.5 9.8E-05 39.2 9.8 31 70-100 31-61 (245)
211 PLN03209 translocon at the inn 87.3 2.3 5E-05 46.2 8.3 35 69-103 78-113 (576)
212 PRK12825 fabG 3-ketoacyl-(acyl 87.2 2.5 5.4E-05 40.2 8.0 32 70-101 5-37 (249)
213 PRK12826 3-ketoacyl-(acyl-carr 87.2 2 4.4E-05 41.1 7.4 34 70-103 5-39 (251)
214 PRK04690 murD UDP-N-acetylmura 87.2 3.1 6.8E-05 44.5 9.4 94 71-178 8-102 (468)
215 PRK06953 short chain dehydroge 87.1 2.3 4.9E-05 40.2 7.5 76 71-153 1-80 (222)
216 PRK10675 UDP-galactose-4-epime 86.9 2.9 6.2E-05 42.3 8.6 72 72-150 1-80 (338)
217 PRK00124 hypothetical protein; 86.8 17 0.00038 32.2 12.2 128 73-219 2-139 (151)
218 PF01488 Shikimate_DH: Shikima 86.8 1.4 3E-05 38.5 5.3 32 70-101 11-43 (135)
219 PRK11908 NAD-dependent epimera 86.8 2.1 4.6E-05 43.6 7.6 31 71-101 1-33 (347)
220 COG0702 Predicted nucleoside-d 86.7 6 0.00013 38.3 10.5 117 72-198 1-135 (275)
221 PF13727 CoA_binding_3: CoA-bi 86.6 2.9 6.2E-05 37.6 7.6 89 72-171 78-171 (175)
222 TIGR01285 nifN nitrogenase mol 86.6 3.6 7.8E-05 43.5 9.3 85 71-172 311-395 (432)
223 PRK07856 short chain dehydroge 86.6 4.5 9.7E-05 38.9 9.4 34 71-104 6-40 (252)
224 TIGR03023 WcaJ_sugtrans Undeca 86.5 4.2 9.2E-05 43.2 10.0 89 71-171 128-221 (451)
225 PRK10124 putative UDP-glucose 86.5 3.7 8E-05 43.9 9.4 86 71-171 143-233 (463)
226 KOG0023 Alcohol dehydrogenase, 86.5 3.1 6.7E-05 41.4 8.0 71 70-148 181-255 (360)
227 PLN02240 UDP-glucose 4-epimera 86.5 3.8 8.2E-05 41.7 9.3 74 70-150 4-88 (352)
228 PLN02686 cinnamoyl-CoA reducta 86.5 2.1 4.6E-05 44.1 7.5 35 67-101 49-84 (367)
229 PRK08219 short chain dehydroge 86.4 1.6 3.5E-05 41.1 6.1 75 70-152 2-80 (227)
230 PRK07024 short chain dehydroge 86.4 2.2 4.8E-05 41.2 7.2 34 70-103 1-35 (257)
231 PRK07074 short chain dehydroge 86.3 2.4 5.3E-05 40.9 7.5 76 70-152 1-86 (257)
232 TIGR02263 benz_CoA_red_C benzo 86.3 2.8 6.1E-05 43.5 8.2 103 70-172 232-355 (380)
233 PRK08762 molybdopterin biosynt 86.2 5.5 0.00012 41.3 10.4 34 68-101 132-166 (376)
234 PRK01710 murD UDP-N-acetylmura 86.2 4.5 9.7E-05 43.1 10.0 89 71-173 14-106 (458)
235 PRK07454 short chain dehydroge 86.2 2.1 4.6E-05 40.9 6.8 34 70-103 5-39 (241)
236 PRK07326 short chain dehydroge 86.1 1.9 4.1E-05 41.0 6.5 32 71-102 6-38 (237)
237 PRK06057 short chain dehydroge 86.0 2.7 5.9E-05 40.5 7.6 75 71-152 7-88 (255)
238 PRK02472 murD UDP-N-acetylmura 86.0 11 0.00023 40.0 12.8 95 71-179 5-102 (447)
239 PRK06482 short chain dehydroge 86.0 2.4 5.1E-05 41.5 7.2 33 70-102 1-34 (276)
240 cd00755 YgdL_like Family of ac 85.9 2.1 4.6E-05 41.0 6.6 31 70-100 10-40 (231)
241 TIGR00518 alaDH alanine dehydr 85.9 1.6 3.5E-05 45.1 6.2 32 71-102 167-198 (370)
242 TIGR01214 rmlD dTDP-4-dehydror 85.9 2.5 5.4E-05 41.6 7.4 57 73-151 1-58 (287)
243 PRK05653 fabG 3-ketoacyl-(acyl 85.8 2.7 5.8E-05 40.0 7.4 33 71-103 5-38 (246)
244 PRK13394 3-hydroxybutyrate deh 85.7 2.1 4.6E-05 41.3 6.7 34 71-104 7-41 (262)
245 PRK00421 murC UDP-N-acetylmura 85.7 3.8 8.3E-05 43.7 9.1 93 71-179 7-100 (461)
246 PRK15181 Vi polysaccharide bio 85.7 3.5 7.6E-05 42.1 8.5 32 71-102 15-47 (348)
247 PRK12745 3-ketoacyl-(acyl-carr 85.6 3.8 8.1E-05 39.4 8.4 33 70-102 1-34 (256)
248 PRK09620 hypothetical protein; 85.5 3.5 7.5E-05 39.6 7.8 23 80-102 29-51 (229)
249 PRK05865 hypothetical protein; 85.4 10 0.00022 43.5 12.7 111 72-200 1-121 (854)
250 PRK06947 glucose-1-dehydrogena 85.3 2.7 5.8E-05 40.3 7.1 32 70-101 1-33 (248)
251 PRK13304 L-aspartate dehydroge 85.2 3.4 7.3E-05 40.6 7.8 87 72-173 2-90 (265)
252 PRK00726 murG undecaprenyldiph 85.2 3.9 8.4E-05 41.7 8.7 99 72-172 2-118 (357)
253 COG2344 AT-rich DNA-binding pr 85.1 5.2 0.00011 36.7 8.1 89 68-170 81-172 (211)
254 PRK09424 pntA NAD(P) transhydr 85.0 2.9 6.2E-05 45.0 7.6 52 69-120 163-214 (509)
255 PF00670 AdoHcyase_NAD: S-aden 85.0 1.2 2.7E-05 39.9 4.1 66 71-153 23-88 (162)
256 PRK06180 short chain dehydroge 85.0 2.6 5.6E-05 41.4 7.0 33 71-103 4-37 (277)
257 PRK12743 oxidoreductase; Provi 85.0 3.5 7.5E-05 39.9 7.8 32 70-101 1-33 (256)
258 PRK07688 thiamine/molybdopteri 84.9 6.2 0.00013 40.3 9.8 34 69-102 22-56 (339)
259 PRK09135 pteridine reductase; 84.8 3.5 7.7E-05 39.3 7.7 33 70-102 5-38 (249)
260 PRK12384 sorbitol-6-phosphate 84.8 2.9 6.2E-05 40.4 7.1 34 70-103 1-35 (259)
261 PRK08265 short chain dehydroge 84.7 3.1 6.7E-05 40.4 7.4 33 71-103 6-39 (261)
262 PRK05600 thiamine biosynthesis 84.7 3.5 7.5E-05 42.6 7.9 33 69-101 39-72 (370)
263 PRK06138 short chain dehydroge 84.7 3 6.4E-05 40.0 7.1 32 71-102 5-37 (252)
264 PRK08644 thiamine biosynthesis 84.7 5.7 0.00012 37.6 8.8 33 69-101 26-59 (212)
265 PRK12939 short chain dehydroge 84.6 3.4 7.4E-05 39.5 7.5 32 71-102 7-39 (250)
266 KOG1447 GTP-specific succinyl- 84.6 6.8 0.00015 37.7 9.0 107 185-293 24-151 (412)
267 cd01976 Nitrogenase_MoFe_alpha 84.5 2.4 5.3E-05 44.6 6.9 89 70-172 299-391 (421)
268 KOG1371 UDP-glucose 4-epimeras 84.5 2.9 6.2E-05 41.7 6.7 74 71-148 2-82 (343)
269 cd01965 Nitrogenase_MoFe_beta_ 84.4 3.1 6.7E-05 43.9 7.6 87 70-172 298-393 (428)
270 PRK07063 short chain dehydroge 84.4 3 6.5E-05 40.3 7.1 33 71-103 7-40 (260)
271 PRK06194 hypothetical protein; 84.4 3.3 7.2E-05 40.7 7.5 32 71-102 6-38 (287)
272 PRK07774 short chain dehydroge 84.4 3.8 8.1E-05 39.3 7.7 33 71-103 6-39 (250)
273 PRK07023 short chain dehydroge 84.3 4.4 9.5E-05 38.7 8.1 32 72-103 2-34 (243)
274 PRK12824 acetoacetyl-CoA reduc 84.2 4 8.6E-05 38.9 7.8 34 70-103 1-35 (245)
275 PRK06701 short chain dehydroge 84.1 4.2 9E-05 40.4 8.1 33 71-103 46-79 (290)
276 PRK07666 fabG 3-ketoacyl-(acyl 84.1 3.4 7.4E-05 39.3 7.3 33 71-103 7-40 (239)
277 PRK09291 short chain dehydroge 83.9 2.2 4.8E-05 41.1 5.9 33 70-102 1-34 (257)
278 PRK07102 short chain dehydroge 83.9 3.1 6.8E-05 39.7 6.9 33 71-103 1-34 (243)
279 PRK06079 enoyl-(acyl carrier p 83.8 2.4 5.1E-05 41.1 6.0 32 71-102 7-41 (252)
280 PLN00141 Tic62-NAD(P)-related 83.8 5 0.00011 38.7 8.3 33 71-103 17-50 (251)
281 PRK00436 argC N-acetyl-gamma-g 83.8 3.4 7.4E-05 42.2 7.4 96 70-174 1-98 (343)
282 PRK06171 sorbitol-6-phosphate 83.7 7.8 0.00017 37.5 9.7 34 71-104 9-43 (266)
283 PRK03369 murD UDP-N-acetylmura 83.6 5 0.00011 43.2 8.9 87 70-173 11-99 (488)
284 PF02639 DUF188: Uncharacteriz 83.6 20 0.00044 31.0 10.9 117 86-219 2-123 (130)
285 cd08239 THR_DH_like L-threonin 83.6 2.9 6.2E-05 42.3 6.8 92 71-169 164-257 (339)
286 PLN02775 Probable dihydrodipic 83.5 25 0.00054 34.8 12.8 72 71-148 11-84 (286)
287 PRK05868 hypothetical protein; 83.5 1.8 3.9E-05 44.7 5.3 32 71-102 1-32 (372)
288 TIGR01283 nifE nitrogenase mol 83.4 5.2 0.00011 42.7 8.8 88 71-172 326-417 (456)
289 PRK05335 tRNA (uracil-5-)-meth 83.4 1.9 4E-05 45.3 5.2 35 70-104 1-35 (436)
290 COG0373 HemA Glutamyl-tRNA red 83.3 2 4.2E-05 44.7 5.3 73 69-153 176-248 (414)
291 PRK07814 short chain dehydroge 83.2 3 6.4E-05 40.6 6.5 33 71-103 10-43 (263)
292 PRK08328 hypothetical protein; 83.2 10 0.00023 36.3 10.1 32 70-101 26-57 (231)
293 PRK07806 short chain dehydroge 83.2 4.7 0.0001 38.6 7.8 32 71-102 6-38 (248)
294 PRK07067 sorbitol dehydrogenas 83.1 3.5 7.7E-05 39.8 7.0 33 71-103 6-39 (257)
295 PRK06475 salicylate hydroxylas 83.1 2 4.3E-05 44.8 5.5 32 71-102 2-33 (400)
296 PRK12742 oxidoreductase; Provi 83.1 5.4 0.00012 37.8 8.1 75 71-152 6-84 (237)
297 TIGR03022 WbaP_sugtrans Undeca 83.1 7.2 0.00016 41.5 9.9 69 71-151 125-196 (456)
298 PLN00198 anthocyanidin reducta 83.1 5 0.00011 40.6 8.3 33 71-103 9-42 (338)
299 PRK02705 murD UDP-N-acetylmura 83.1 7.3 0.00016 41.4 9.9 92 73-173 2-97 (459)
300 PF02826 2-Hacid_dh_C: D-isome 83.0 2.2 4.8E-05 39.1 5.1 36 69-104 34-69 (178)
301 PRK07060 short chain dehydroge 82.9 3.6 7.9E-05 39.2 6.9 75 71-152 9-86 (245)
302 TIGR01133 murG undecaprenyldip 82.8 13 0.00028 37.5 11.3 30 73-102 2-36 (348)
303 PRK15116 sulfur acceptor prote 82.8 5.1 0.00011 39.4 7.8 32 70-101 29-61 (268)
304 PRK07890 short chain dehydroge 82.8 2.5 5.4E-05 40.7 5.7 33 71-103 5-38 (258)
305 PRK06935 2-deoxy-D-gluconate 3 82.8 4.2 9.1E-05 39.3 7.4 33 71-103 15-48 (258)
306 PRK08251 short chain dehydroge 82.7 3.6 7.8E-05 39.4 6.8 34 70-103 1-35 (248)
307 cd01485 E1-1_like Ubiquitin ac 82.7 11 0.00024 35.2 9.7 32 70-101 18-50 (198)
308 TIGR01832 kduD 2-deoxy-D-gluco 82.6 3.9 8.6E-05 39.1 7.0 32 71-102 5-37 (248)
309 PRK07453 protochlorophyllide o 82.5 3.5 7.7E-05 41.5 6.9 33 70-102 5-38 (322)
310 PRK06841 short chain dehydroge 82.5 4.7 0.0001 38.7 7.6 33 71-103 15-48 (255)
311 PRK06523 short chain dehydroge 82.5 7.6 0.00016 37.4 9.0 33 71-103 9-42 (260)
312 PRK07236 hypothetical protein; 82.3 2.5 5.5E-05 43.8 5.9 33 70-102 5-37 (386)
313 KOG0029 Amine oxidase [Seconda 82.3 3.4 7.5E-05 44.4 6.9 35 68-102 12-46 (501)
314 PRK06753 hypothetical protein; 82.2 2.3 4.9E-05 43.8 5.5 33 72-104 1-33 (373)
315 PRK06847 hypothetical protein; 82.2 2.4 5.2E-05 43.6 5.7 32 71-102 4-35 (375)
316 PRK12429 3-hydroxybutyrate deh 82.1 3.6 7.8E-05 39.5 6.6 32 72-103 5-37 (258)
317 PLN02427 UDP-apiose/xylose syn 81.8 5.1 0.00011 41.5 8.0 32 71-102 14-47 (386)
318 PRK10084 dTDP-glucose 4,6 dehy 81.7 6 0.00013 40.2 8.4 73 72-151 1-81 (352)
319 COG0287 TyrA Prephenate dehydr 81.7 2.9 6.3E-05 41.3 5.7 36 70-105 2-37 (279)
320 PRK08220 2,3-dihydroxybenzoate 81.6 9.5 0.00021 36.5 9.4 72 71-152 8-85 (252)
321 PRK14573 bifunctional D-alanyl 81.6 12 0.00027 43.0 11.6 110 71-198 4-132 (809)
322 PRK06101 short chain dehydroge 81.6 3.3 7.3E-05 39.6 6.1 33 71-103 1-34 (240)
323 PRK07576 short chain dehydroge 81.5 3.8 8.3E-05 39.9 6.6 34 70-103 8-42 (264)
324 COG0289 DapB Dihydrodipicolina 81.5 17 0.00038 35.3 10.6 32 70-101 1-34 (266)
325 PRK08163 salicylate hydroxylas 81.5 2.6 5.5E-05 43.8 5.6 33 71-103 4-36 (396)
326 COG0451 WcaG Nucleoside-diphos 81.5 5.6 0.00012 39.4 7.9 33 73-105 2-35 (314)
327 PRK08309 short chain dehydroge 81.5 8.1 0.00018 35.4 8.2 31 72-102 1-31 (177)
328 PRK06500 short chain dehydroge 81.4 2.5 5.5E-05 40.4 5.2 33 70-102 5-38 (249)
329 PRK07523 gluconate 5-dehydroge 81.4 2.7 5.9E-05 40.5 5.4 33 71-103 10-43 (255)
330 PRK05597 molybdopterin biosynt 81.4 9.1 0.0002 39.3 9.4 33 69-101 26-58 (355)
331 PRK12823 benD 1,6-dihydroxycyc 81.4 3.6 7.9E-05 39.7 6.3 32 71-102 8-40 (260)
332 PLN02214 cinnamoyl-CoA reducta 81.3 5.9 0.00013 40.3 8.1 34 70-103 9-43 (342)
333 PRK05717 oxidoreductase; Valid 81.3 5 0.00011 38.7 7.3 32 71-102 10-42 (255)
334 PRK06463 fabG 3-ketoacyl-(acyl 81.2 6.9 0.00015 37.7 8.2 31 71-101 7-38 (255)
335 PRK05678 succinyl-CoA syntheta 81.2 15 0.00033 36.5 10.6 109 71-185 8-133 (291)
336 PRK08223 hypothetical protein; 81.2 11 0.00023 37.5 9.3 32 70-101 26-57 (287)
337 PRK08132 FAD-dependent oxidore 81.2 2.8 6E-05 45.8 5.9 40 65-104 17-56 (547)
338 PRK06139 short chain dehydroge 81.1 4 8.7E-05 41.4 6.7 33 71-103 7-40 (330)
339 PRK05875 short chain dehydroge 81.0 4.3 9.2E-05 39.7 6.7 32 71-102 7-39 (276)
340 cd01994 Alpha_ANH_like_IV This 81.0 42 0.0009 31.2 12.9 137 76-232 5-148 (194)
341 PRK07478 short chain dehydroge 80.9 5.3 0.00012 38.4 7.3 33 71-103 6-39 (254)
342 PRK08229 2-dehydropantoate 2-r 80.8 2.3 5.1E-05 43.2 4.9 33 70-102 1-33 (341)
343 PF01262 AlaDh_PNT_C: Alanine 80.8 3.1 6.8E-05 37.7 5.2 33 71-103 20-52 (168)
344 PRK06200 2,3-dihydroxy-2,3-dih 80.8 4.7 0.0001 39.1 6.9 33 71-103 6-39 (263)
345 PRK06196 oxidoreductase; Provi 80.8 4.1 8.8E-05 40.9 6.6 75 71-152 26-108 (315)
346 PRK08217 fabG 3-ketoacyl-(acyl 80.7 3.8 8.2E-05 39.2 6.2 33 71-103 5-38 (253)
347 PF03446 NAD_binding_2: NAD bi 80.7 2.9 6.4E-05 37.6 5.0 32 71-102 1-32 (163)
348 TIGR03451 mycoS_dep_FDH mycoth 80.7 4.6 0.0001 41.3 7.1 77 70-152 176-254 (358)
349 TIGR02354 thiF_fam2 thiamine b 80.6 7.2 0.00016 36.5 7.7 33 70-102 20-53 (200)
350 PRK09134 short chain dehydroge 80.6 5.3 0.00011 38.6 7.2 33 69-101 7-40 (258)
351 TIGR01179 galE UDP-glucose-4-e 80.6 6.8 0.00015 39.0 8.2 73 73-152 1-79 (328)
352 PF01494 FAD_binding_3: FAD bi 80.6 3 6.4E-05 42.0 5.6 33 73-105 3-35 (356)
353 PF00743 FMO-like: Flavin-bind 80.6 2.7 5.9E-05 45.7 5.5 36 71-106 1-36 (531)
354 PLN02896 cinnamyl-alcohol dehy 80.3 5 0.00011 41.0 7.2 73 70-149 9-85 (353)
355 PRK06172 short chain dehydroge 80.3 6.6 0.00014 37.7 7.7 33 71-103 7-40 (253)
356 KOG1399 Flavin-containing mono 80.2 2.5 5.4E-05 44.7 4.9 37 69-105 4-40 (448)
357 CHL00076 chlB photochlorophyll 80.1 9 0.0002 41.5 9.3 71 71-150 305-381 (513)
358 TIGR01278 DPOR_BchB light-inde 80.1 7.9 0.00017 41.9 8.9 87 70-172 294-386 (511)
359 PRK12367 short chain dehydroge 80.1 7.9 0.00017 37.4 8.1 73 71-152 14-88 (245)
360 cd01492 Aos1_SUMO Ubiquitin ac 80.0 8 0.00017 36.1 7.8 74 70-148 20-93 (197)
361 PLN02253 xanthoxin dehydrogena 80.0 4.6 9.9E-05 39.6 6.6 32 71-102 18-50 (280)
362 PRK10637 cysG siroheme synthas 79.9 5 0.00011 42.8 7.2 33 71-103 12-44 (457)
363 PRK07984 enoyl-(acyl carrier p 79.9 6.3 0.00014 38.5 7.4 32 71-102 6-40 (262)
364 PRK12771 putative glutamate sy 79.8 5.3 0.00011 43.9 7.6 34 69-102 135-168 (564)
365 COG2308 Uncharacterized conser 79.8 3 6.4E-05 43.1 5.1 73 193-274 340-414 (488)
366 PRK14478 nitrogenase molybdenu 79.8 5.6 0.00012 42.6 7.5 89 70-172 323-415 (475)
367 PRK08226 short chain dehydroge 79.6 5.9 0.00013 38.3 7.1 32 71-102 6-38 (263)
368 TIGR01282 nifD nitrogenase mol 79.5 2.1 4.6E-05 45.7 4.2 88 70-171 334-425 (466)
369 PF13450 NAD_binding_8: NAD(P) 79.5 3.9 8.6E-05 30.9 4.6 30 76-105 1-30 (68)
370 PRK12409 D-amino acid dehydrog 79.5 2.9 6.2E-05 43.7 5.2 32 72-103 2-33 (410)
371 PRK04308 murD UDP-N-acetylmura 79.5 13 0.00029 39.3 10.3 93 71-179 5-101 (445)
372 PLN00093 geranylgeranyl diphos 79.5 4.5 9.8E-05 43.0 6.7 36 67-102 35-70 (450)
373 PF04174 CP_ATPgrasp_1: A circ 79.3 2.8 6.2E-05 42.3 4.8 68 193-269 262-330 (330)
374 cd01080 NAD_bind_m-THF_DH_Cycl 79.3 2.7 5.9E-05 38.2 4.3 33 69-101 42-75 (168)
375 cd01981 Pchlide_reductase_B Pc 79.3 8.8 0.00019 40.5 8.8 87 70-172 300-392 (430)
376 PLN02172 flavin-containing mon 79.2 3.1 6.7E-05 44.4 5.3 35 71-105 10-44 (461)
377 TIGR03570 NeuD_NnaD sugar O-ac 79.2 9.9 0.00021 34.9 8.3 29 73-101 1-29 (201)
378 PRK09186 flagellin modificatio 79.2 6.8 0.00015 37.6 7.4 32 71-102 4-36 (256)
379 PLN02871 UDP-sulfoquinovose:DA 79.2 34 0.00073 36.4 13.3 87 83-172 80-172 (465)
380 PF02737 3HCDH_N: 3-hydroxyacy 79.1 3.2 6.9E-05 38.2 4.8 31 73-103 1-31 (180)
381 PRK06197 short chain dehydroge 79.1 4.5 9.8E-05 40.3 6.3 33 70-102 15-48 (306)
382 TIGR03366 HpnZ_proposed putati 79.1 4.2 9.1E-05 40.0 6.0 32 70-101 120-152 (280)
383 COG0063 Predicted sugar kinase 79.1 42 0.00091 33.3 12.8 145 71-229 32-198 (284)
384 PRK06949 short chain dehydroge 79.0 5.7 0.00012 38.2 6.9 33 71-103 9-42 (258)
385 TIGR02360 pbenz_hydroxyl 4-hyd 79.0 3.2 6.9E-05 43.2 5.3 33 70-102 1-33 (390)
386 PRK07035 short chain dehydroge 79.0 5.1 0.00011 38.5 6.5 33 71-103 8-41 (252)
387 COG1086 Predicted nucleoside-d 79.0 13 0.00028 40.1 9.7 94 67-171 112-207 (588)
388 PRK13301 putative L-aspartate 79.0 9.9 0.00022 37.1 8.2 95 70-180 1-98 (267)
389 PLN02206 UDP-glucuronate decar 79.0 4.4 9.5E-05 43.0 6.4 32 70-101 118-150 (442)
390 PRK08263 short chain dehydroge 79.0 6.3 0.00014 38.5 7.2 78 70-152 2-86 (275)
391 PRK02910 light-independent pro 78.9 12 0.00025 40.7 9.7 87 70-172 292-384 (519)
392 KOG1198 Zinc-binding oxidoredu 78.8 18 0.00039 37.0 10.6 75 68-152 155-234 (347)
393 PRK07878 molybdopterin biosynt 78.8 20 0.00044 37.3 11.2 32 70-101 41-72 (392)
394 PRK10538 malonic semialdehyde 78.8 5.9 0.00013 38.0 6.8 32 72-103 1-33 (248)
395 PRK12748 3-ketoacyl-(acyl-carr 78.7 16 0.00034 35.2 9.8 33 70-102 4-39 (256)
396 PRK08306 dipicolinate synthase 78.7 3 6.4E-05 41.7 4.7 34 70-103 151-184 (296)
397 PRK08213 gluconate 5-dehydroge 78.7 4.7 0.0001 38.9 6.1 33 71-103 12-45 (259)
398 PRK07533 enoyl-(acyl carrier p 78.6 7.3 0.00016 37.7 7.5 33 71-103 10-45 (258)
399 TIGR00290 MJ0570_dom MJ0570-re 78.6 35 0.00075 32.5 11.6 141 72-232 2-145 (223)
400 PRK06914 short chain dehydroge 78.6 5.7 0.00012 38.9 6.7 33 71-103 3-36 (280)
401 PRK05884 short chain dehydroge 78.5 5 0.00011 38.0 6.1 71 73-150 2-76 (223)
402 PRK00048 dihydrodipicolinate r 78.5 22 0.00047 34.7 10.7 85 72-172 2-88 (257)
403 PRK08642 fabG 3-ketoacyl-(acyl 78.5 5.4 0.00012 38.2 6.4 31 71-101 5-36 (253)
404 PRK06128 oxidoreductase; Provi 78.2 6.9 0.00015 38.9 7.3 31 71-101 55-86 (300)
405 PLN02986 cinnamyl-alcohol dehy 78.2 6.8 0.00015 39.3 7.3 32 71-102 5-37 (322)
406 PRK08243 4-hydroxybenzoate 3-m 78.1 3.4 7.4E-05 42.9 5.2 33 70-102 1-33 (392)
407 TIGR02853 spore_dpaA dipicolin 78.1 3.4 7.4E-05 41.1 4.9 33 71-103 151-183 (287)
408 PLN02662 cinnamyl-alcohol dehy 78.0 5.5 0.00012 39.8 6.6 32 72-103 5-37 (322)
409 PRK02006 murD UDP-N-acetylmura 78.0 11 0.00025 40.5 9.4 32 71-102 7-38 (498)
410 PRK12827 short chain dehydroge 78.0 14 0.00031 35.0 9.2 32 70-101 5-37 (249)
411 PRK07831 short chain dehydroge 77.9 6 0.00013 38.3 6.6 32 71-102 17-50 (262)
412 COG1519 KdtA 3-deoxy-D-manno-o 77.9 8.9 0.00019 39.7 7.9 139 72-223 50-198 (419)
413 PRK05867 short chain dehydroge 77.9 6 0.00013 38.1 6.6 32 71-102 9-41 (253)
414 PRK08278 short chain dehydroge 77.9 15 0.00032 35.9 9.4 33 71-103 6-39 (273)
415 COG1249 Lpd Pyruvate/2-oxoglut 77.9 5 0.00011 42.6 6.3 39 63-101 165-203 (454)
416 cd01974 Nitrogenase_MoFe_beta 77.9 15 0.00032 38.9 9.9 88 71-172 303-399 (435)
417 PRK05866 short chain dehydroge 77.8 5.2 0.00011 39.8 6.2 33 71-103 40-73 (293)
418 PRK06185 hypothetical protein; 77.8 3.5 7.7E-05 42.9 5.3 35 69-103 4-38 (407)
419 KOG2614 Kynurenine 3-monooxyge 77.8 3.5 7.5E-05 42.5 4.9 35 71-105 2-36 (420)
420 PRK06181 short chain dehydroge 77.8 6.7 0.00014 37.9 6.9 32 72-103 2-34 (263)
421 PRK05476 S-adenosyl-L-homocyst 77.8 6.5 0.00014 41.3 7.1 34 70-103 211-244 (425)
422 COG4091 Predicted homoserine d 77.7 3.7 8E-05 41.3 4.9 187 71-274 17-220 (438)
423 PRK12809 putative oxidoreducta 77.6 5.6 0.00012 44.4 7.0 34 70-103 309-342 (639)
424 cd01490 Ube1_repeat2 Ubiquitin 77.6 9.8 0.00021 40.1 8.3 29 73-101 1-35 (435)
425 TIGR01861 ANFD nitrogenase iro 77.6 9.2 0.0002 41.3 8.3 89 70-172 327-420 (513)
426 TIGR00460 fmt methionyl-tRNA f 77.6 8.6 0.00019 38.7 7.7 34 72-105 1-34 (313)
427 PRK08340 glucose-1-dehydrogena 77.6 6.5 0.00014 38.0 6.7 32 72-103 1-33 (259)
428 PRK00683 murD UDP-N-acetylmura 77.5 12 0.00026 39.4 9.1 85 71-172 3-87 (418)
429 PRK12810 gltD glutamate syntha 77.5 9.4 0.0002 40.8 8.5 34 70-103 142-175 (471)
430 PLN02989 cinnamyl-alcohol dehy 77.5 8.2 0.00018 38.8 7.7 33 71-103 5-38 (325)
431 PRK07825 short chain dehydroge 77.4 5 0.00011 39.1 5.9 32 71-102 5-37 (273)
432 PRK09072 short chain dehydroge 77.3 7.2 0.00016 37.8 7.0 33 71-103 5-38 (263)
433 PRK07819 3-hydroxybutyryl-CoA 77.3 3.2 6.8E-05 41.3 4.4 35 71-105 5-39 (286)
434 PRK08628 short chain dehydroge 77.2 10 0.00023 36.4 8.1 33 71-103 7-40 (258)
435 cd08281 liver_ADH_like1 Zinc-d 77.1 6.1 0.00013 40.7 6.7 92 70-168 191-284 (371)
436 PF02843 GARS_C: Phosphoribosy 77.0 3.6 7.7E-05 33.4 3.9 34 453-486 51-84 (93)
437 PRK09126 hypothetical protein; 77.0 3.6 7.9E-05 42.6 5.1 33 71-103 3-35 (392)
438 PRK07109 short chain dehydroge 77.0 5.5 0.00012 40.5 6.3 33 71-103 8-41 (334)
439 PRK11883 protoporphyrinogen ox 77.0 7.7 0.00017 40.9 7.6 33 72-104 1-35 (451)
440 TIGR03190 benz_CoA_bzdN benzoy 77.0 8.5 0.00018 39.9 7.7 102 70-172 228-347 (377)
441 PRK08773 2-octaprenyl-3-methyl 76.9 3.7 7.9E-05 42.6 5.1 33 70-102 5-37 (392)
442 PRK06113 7-alpha-hydroxysteroi 76.9 7.5 0.00016 37.4 6.9 32 71-102 11-43 (255)
443 TIGR03013 EpsB_2 sugar transfe 76.9 17 0.00037 38.6 10.1 68 71-151 124-194 (442)
444 COG1148 HdrA Heterodisulfide r 76.8 3.7 8E-05 43.2 4.7 36 70-105 123-158 (622)
445 PRK00005 fmt methionyl-tRNA fo 76.8 8.2 0.00018 38.8 7.3 34 72-105 1-34 (309)
446 cd08230 glucose_DH Glucose deh 76.6 11 0.00024 38.4 8.5 33 70-102 172-204 (355)
447 PRK08818 prephenate dehydrogen 76.6 16 0.00036 37.6 9.5 32 71-102 4-37 (370)
448 PLN02650 dihydroflavonol-4-red 76.5 7.8 0.00017 39.5 7.3 33 71-103 5-38 (351)
449 PRK09260 3-hydroxybutyryl-CoA 76.5 3.2 7E-05 41.2 4.3 34 71-104 1-34 (288)
450 PRK12937 short chain dehydroge 76.4 10 0.00022 36.0 7.7 31 71-101 5-36 (245)
451 TIGR01181 dTDP_gluc_dehyt dTDP 76.4 8.6 0.00019 38.1 7.4 72 73-151 1-81 (317)
452 PRK09853 putative selenate red 76.3 6.9 0.00015 45.6 7.3 34 70-103 538-571 (1019)
453 PRK06129 3-hydroxyacyl-CoA deh 76.3 3.8 8.1E-05 41.2 4.8 33 71-103 2-34 (308)
454 PRK05876 short chain dehydroge 76.3 8.2 0.00018 37.9 7.1 32 71-102 6-38 (275)
455 PRK12831 putative oxidoreducta 76.2 4.8 0.0001 43.0 5.8 34 69-102 138-171 (464)
456 PRK08690 enoyl-(acyl carrier p 76.0 7.1 0.00015 37.9 6.5 31 71-101 6-39 (261)
457 PRK07578 short chain dehydroge 76.0 17 0.00037 33.4 8.8 61 73-152 2-64 (199)
458 PRK08936 glucose-1-dehydrogena 76.0 13 0.00027 36.0 8.3 33 70-102 6-39 (261)
459 TIGR02049 gshA_ferroox glutama 76.0 10 0.00022 38.5 7.4 51 224-274 260-313 (403)
460 PRK06198 short chain dehydroge 75.8 9.2 0.0002 36.8 7.3 32 71-102 6-39 (260)
461 PRK10262 thioredoxin reductase 75.8 8.5 0.00019 38.7 7.2 32 70-101 5-36 (321)
462 PRK08244 hypothetical protein; 75.8 4.6 9.9E-05 43.5 5.5 34 71-104 2-35 (493)
463 PRK07538 hypothetical protein; 75.8 4.2 9.1E-05 42.6 5.2 31 72-102 1-31 (413)
464 cd01968 Nitrogenase_NifE_I Nit 75.7 9 0.0002 40.2 7.6 88 71-172 287-378 (410)
465 PRK08589 short chain dehydroge 75.7 8.9 0.00019 37.4 7.2 33 71-103 6-39 (272)
466 TIGR03325 BphB_TodD cis-2,3-di 75.7 9.3 0.0002 37.0 7.3 32 71-102 5-37 (262)
467 PRK06505 enoyl-(acyl carrier p 75.7 8.2 0.00018 37.8 6.9 31 71-101 7-40 (271)
468 PRK07775 short chain dehydroge 75.6 9.1 0.0002 37.4 7.2 34 69-102 8-42 (274)
469 PRK06126 hypothetical protein; 75.5 5.4 0.00012 43.5 6.1 35 69-103 5-39 (545)
470 cd00316 Oxidoreductase_nitroge 75.4 20 0.00043 37.3 10.1 87 70-172 278-370 (399)
471 COG1063 Tdh Threonine dehydrog 75.4 5.3 0.00011 40.9 5.6 92 72-168 170-263 (350)
472 KOG1201 Hydroxysteroid 17-beta 75.4 6.7 0.00015 38.7 5.9 37 71-107 38-75 (300)
473 TIGR01292 TRX_reduct thioredox 75.4 9.8 0.00021 37.4 7.5 30 73-102 2-31 (300)
474 TIGR01318 gltD_gamma_fam gluta 75.4 7.2 0.00016 41.7 6.9 33 70-102 140-172 (467)
475 PRK05579 bifunctional phosphop 75.3 14 0.00031 38.5 8.8 68 71-150 188-274 (399)
476 PRK13512 coenzyme A disulfide 75.3 4.4 9.6E-05 42.9 5.2 33 71-103 1-35 (438)
477 PRK11559 garR tartronate semia 75.2 4 8.6E-05 40.6 4.6 33 70-102 1-33 (296)
478 PRK07877 hypothetical protein; 75.2 4.7 0.0001 45.3 5.5 32 70-102 106-139 (722)
479 KOG0024 Sorbitol dehydrogenase 75.2 8.7 0.00019 38.4 6.7 81 68-153 167-252 (354)
480 PRK06270 homoserine dehydrogen 75.2 28 0.00062 35.5 10.8 24 70-93 1-24 (341)
481 PRK07066 3-hydroxybutyryl-CoA 75.1 4.6 9.9E-05 40.8 4.9 34 71-104 7-40 (321)
482 COG1232 HemY Protoporphyrinoge 75.0 8.5 0.00018 40.7 7.1 34 72-105 1-36 (444)
483 PRK05329 anaerobic glycerol-3- 75.0 8.6 0.00019 40.5 7.1 34 70-103 1-34 (422)
484 PF13477 Glyco_trans_4_2: Glyc 75.0 8.8 0.00019 32.9 6.2 79 73-151 1-82 (139)
485 PRK11579 putative oxidoreducta 74.9 8.4 0.00018 39.3 7.0 141 72-228 5-150 (346)
486 PRK12746 short chain dehydroge 74.9 10 0.00022 36.3 7.3 30 71-100 6-36 (254)
487 PLN02968 Probable N-acetyl-gam 74.9 12 0.00027 38.8 8.1 35 69-103 36-72 (381)
488 COG2085 Predicted dinucleotide 74.9 7 0.00015 36.7 5.7 31 71-101 1-31 (211)
489 PRK07889 enoyl-(acyl carrier p 74.9 13 0.00028 35.9 8.1 31 71-101 7-40 (256)
490 cd01487 E1_ThiF_like E1_ThiF_l 74.8 12 0.00026 34.1 7.3 31 73-103 1-32 (174)
491 PRK08594 enoyl-(acyl carrier p 74.8 12 0.00026 36.3 7.7 31 71-101 7-40 (257)
492 PRK05786 fabG 3-ketoacyl-(acyl 74.8 10 0.00023 35.8 7.3 33 71-103 5-38 (238)
493 TIGR00562 proto_IX_ox protopor 74.7 12 0.00026 39.7 8.4 34 71-104 2-39 (462)
494 TIGR01963 PHB_DH 3-hydroxybuty 74.7 4.8 0.0001 38.6 4.9 32 72-103 2-34 (255)
495 PRK07608 ubiquinone biosynthes 74.7 4.5 9.7E-05 41.8 5.0 36 69-104 3-38 (388)
496 COG0707 MurG UDP-N-acetylgluco 74.6 17 0.00037 37.3 9.0 112 73-186 2-132 (357)
497 PF07992 Pyr_redox_2: Pyridine 74.5 5.2 0.00011 36.8 4.9 28 73-100 1-28 (201)
498 COG0654 UbiH 2-polyprenyl-6-me 74.4 3.9 8.5E-05 42.5 4.5 31 71-101 2-32 (387)
499 PRK07677 short chain dehydroge 74.4 8 0.00017 37.2 6.4 32 72-103 2-34 (252)
500 PRK05557 fabG 3-ketoacyl-(acyl 74.3 16 0.00035 34.5 8.5 31 72-102 6-37 (248)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=3.7e-85 Score=656.82 Aligned_cols=449 Identities=54% Similarity=0.919 Sum_probs=442.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|++||||.|+|++++++|++|+++|+.++.++++.|.++.+.++||+.+.+++.+..++|++.+.|++.+++.+.++|+|
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP 80 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP 80 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
+|||++|++.+++.+++.|+-++||++++++.+.||...|.++.++|+|+.|.|...++|.+++.++++++|||++||+.
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs 160 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS 160 (645)
T ss_pred CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+|++++.+.+|+.++++.++.+...+||+++++||+|+.-++|+.++|+.|++|+++++++++|+.+++|+++++
T Consensus 161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE 240 (645)
T COG4770 161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240 (645)
T ss_pred cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|+|.++++++++|.+.+.+++++.||.|..+|||+++.+|.+||+|+|+|++..||.++++||+||++|+++++.|++
T Consensus 241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Gek 320 (645)
T COG4770 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEK 320 (645)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
+++.+.+++.+|++++.|+|++|+.++|+|+.|++..+.+|..+++|+|..+..|+.|+++||++|+++|+||.|+++|+
T Consensus 321 L~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl 400 (645)
T COG4770 321 LPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEAL 400 (645)
T ss_pred CCcccccccccceeEEEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHHh
Q 009903 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 518 (523)
Q Consensus 470 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (523)
+++.++++...|.|+.||++||++++.||+|..|++||+||.+|+++|-
T Consensus 401 ~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~ 449 (645)
T COG4770 401 DRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIEDLF 449 (645)
T ss_pred HHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcceeeeecccccc
Confidence 9999999999999999999999999999999999999999999999984
No 2
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1e-82 Score=628.51 Aligned_cols=447 Identities=57% Similarity=0.950 Sum_probs=438.0
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009903 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (523)
Q Consensus 74 ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g~ 153 (523)
|||.++|++++++++.|+++|++++.++++.|.++.+...||+.+++++++...+|++.+.|++.+++.+..+|+|++||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF 80 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF 80 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCC
Q 009903 154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGG 233 (523)
Q Consensus 154 ~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~g 233 (523)
++|+..++++|+..|+.++||++.+++.+.||...|++++++|+|+.+.|....+|.+++.+.++++|||++||+..|+|
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG 160 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG 160 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEecCC
Q 009903 234 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPS 313 (523)
Q Consensus 234 s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~~p~ 313 (523)
|+|++++.+++|+.+.++..+.+...+||++.+++|+||+.++|+.+++++|+.|+.+++++++|+++++++++++..|+
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPa 240 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA 240 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCCCCCC
Q 009903 314 PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK 393 (523)
Q Consensus 314 ~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~~~~~ 393 (523)
+.++++.+.+|.+.|+++++++||.|..+|||++|..+++||+|+|+|++..+|.+++++|.||++|+++++.|+++++.
T Consensus 241 p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp~~ 320 (670)
T KOG0238|consen 241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLPLK 320 (670)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecC-CCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHHHHH
Q 009903 394 QEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA-GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERM 472 (523)
Q Consensus 394 ~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~-~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~~~~ 472 (523)
+.+++..|+++++|+|++++.++|.|++|.+..+..| -.|++|++..+++|+.|++.||++++.+++||+|+++|+.++
T Consensus 321 q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl 400 (670)
T KOG0238|consen 321 QEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKL 400 (670)
T ss_pred cceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHHH
Confidence 9999999999999999999999999999999999654 368999999999999999999999999999999999999999
Q ss_pred HHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHHhhh
Q 009903 473 KRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAV 520 (523)
Q Consensus 473 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (523)
++++++..|.|++||++||+.++.|+.|..|+|+|.||++|.+||.++
T Consensus 401 ~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~ 448 (670)
T KOG0238|consen 401 KDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAP 448 (670)
T ss_pred HHHHhhcEEecCccchHHHHHHhcChhhhcCccccccchhcCccccCc
Confidence 999999999999999999999999999999999999999999999655
No 3
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=6.3e-75 Score=614.39 Aligned_cols=446 Identities=54% Similarity=0.947 Sum_probs=421.6
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+|||||+|+|+++.+++++|+++|+++++++++.+..+.+.+++|+.+.+++....++|.|.+.|++++++.++|+|+|
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p 80 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP 80 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999999999998888888888999999999988788889999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++|+++|+..+++.+++.|++++||++++++.+.||..++++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 g~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~ 160 (499)
T PRK08654 81 GYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160 (499)
T ss_pred CCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998433378999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+|+++|++.+||.++++.........|+++.+++|+||+|++|++++++.|+.|+++++++++|+.++.+++..+
T Consensus 161 ~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie 240 (499)
T PRK08654 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240 (499)
T ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEE
Confidence 99999999999999999999998877766677888999999999889999999999999999999999999998999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|++.++++++++|.+.+.++++++||.|++++||++++ |++||+|||||++++++++++++|+|++++++++++|.+
T Consensus 241 ~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~-g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~ 319 (499)
T PRK08654 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSN-GNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEE 319 (499)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEEC-CcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCCC
Confidence 9998779999999999999999999999999999999974 569999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
++..+.++...|+++.+|++++++..+|.|++|.|..+..++.++++++..++.|+.++++||+++|+||++|+|+++|+
T Consensus 320 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~a~ 399 (499)
T PRK08654 320 LSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAI 399 (499)
T ss_pred CCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCCccCchhheeeEeCCCHHHHH
Confidence 98877677788999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHH
Q 009903 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (523)
Q Consensus 470 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (523)
+++.++++.+.|.|+.||.+||+.+|.||+|.+|.++|+||.+| ++|
T Consensus 400 ~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~-~~~ 446 (499)
T PRK08654 400 ARMRRALYEYVIVGVKTNIPFHKAVMENENFVRGNLHTHFIEEE-TTI 446 (499)
T ss_pred HHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCCccchhhhcC-HHH
Confidence 99999999999999999999999999999999999999999999 444
No 4
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.1e-72 Score=597.48 Aligned_cols=446 Identities=54% Similarity=0.895 Sum_probs=418.3
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+|||||+|+|+++.+++++|+++|+++++++++.+..+++.+++|+.+.+++.+. ++|.|.+.|++++++.++|+|+|
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~p 79 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHP 79 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEe
Confidence 57999999999999999999999999999999998988899999999999875444 78999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++|+++|+..+++.++++|++++||++++++.+.||..+|++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 80 g~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~ 159 (472)
T PRK07178 80 GYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKAT 159 (472)
T ss_pred CCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 99999999989999999999999999999999999999999999999999998433478999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+|+++|++.+||.++++.+.......+++.++++|+||++++|++++++.+++|+++++.+++++.++.+.+..+
T Consensus 160 ~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e 239 (472)
T PRK07178 160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE 239 (472)
T ss_pred CCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEE
Confidence 99999999999999999999998877666667777899999998889999999999999999999999988888888888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|++.++++.++++.+.+.+++++||+.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 240 ~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~ 319 (472)
T PRK07178 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLP 319 (472)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCCC
Confidence 88887799999999999999999999999999999999977789999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
++..+.+....|+++.++++++++..+|.|+.|.+..+..+..++++++..+++|+.|++++|+.+|+||++|+|+++|+
T Consensus 320 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~a~ 399 (472)
T PRK07178 320 LSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEAL 399 (472)
T ss_pred CCCccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcccCCccceEEEEcCCHHHHH
Confidence 98766667788999999999999999999999999999888889999999999999999999998999999999999999
Q ss_pred HHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHH
Q 009903 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (523)
Q Consensus 470 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (523)
+++.++++.++|.|+.||++||+.+|.||+|.+|.++|.||.+| .+|
T Consensus 400 ~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~ 446 (472)
T PRK07178 400 DRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSGQFNTSFVESH-PEL 446 (472)
T ss_pred HHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhh
Confidence 99999999999999999999999999999999999999999998 676
No 5
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=1.6e-72 Score=595.55 Aligned_cols=448 Identities=52% Similarity=0.869 Sum_probs=418.2
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
+|+|||||+|+|+++++++++|+++|+++++++++.+..+++..++|+.+.+++....++|.|.+.+++++++.++|+|+
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~ 82 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIH 82 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 56899999999999999999999999999999887788888899999999887777777899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEe
Q 009903 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP 228 (523)
|++++++|+..+++.+++.|++++||++++++.+.||..+|++|+++|||+|+++...+.+.+++.++++++|||+||||
T Consensus 83 pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp 162 (467)
T PRK12833 83 PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKA 162 (467)
T ss_pred ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEE
Confidence 99999999998889999999999999999999999999999999999999999843378899999999999999999999
Q ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceee
Q 009903 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (523)
Q Consensus 229 ~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~ 308 (523)
..|+||+|++++++.+||.++++.+..+....++++.++||+||++++|+++++++|++ .++++.+++|..++.+.++.
T Consensus 163 ~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~ 241 (467)
T PRK12833 163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKIL 241 (467)
T ss_pred CCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEE
Confidence 99999999999999999999999887666666777899999999966999999999876 67888888888888888888
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEe-CCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcC
Q 009903 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (523)
Q Consensus 309 ~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~-~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G 387 (523)
...|++.++++..+++.+.+.++++++||.|++++||+++ ++|++||||||||+++++++++.++|+|++++++++++|
T Consensus 242 e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G 321 (467)
T PRK12833 242 EEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADG 321 (467)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHCC
Confidence 8888877999999999999999999999999999999998 567899999999999889999999999999999999999
Q ss_pred CCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHH
Q 009903 388 GKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (523)
Q Consensus 388 ~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~e 467 (523)
++++..+.++...|+++.++++++++.++|.|.+|.+..+..+..++++++..++.|+.|++++|+++|+||++|+|+++
T Consensus 322 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~~ 401 (467)
T PRK12833 322 EPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAA 401 (467)
T ss_pred CCCCCCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEecceeCcCEeCCCcCcchheEEEEcCCHHH
Confidence 99987666677889999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHH
Q 009903 468 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (523)
Q Consensus 468 a~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (523)
|++++.++++.+.|+|+.||.+||+.+|.||+|.+|.++|.||.+|+++|
T Consensus 402 a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 451 (467)
T PRK12833 402 ALARAARALRELRIDGMKTTAPLHRALLADADVRAGRFHTNFLEAWLAEW 451 (467)
T ss_pred HHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999988
No 6
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=4.9e-73 Score=579.99 Aligned_cols=447 Identities=59% Similarity=0.991 Sum_probs=433.5
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|++||||.++|+++.+++++++++|++++.+++..+..+.+..++|+.++++++++.++|.+.+.++..++..+.|+|+|
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p 80 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP 80 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcc
Confidence 68999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++||++|+..+++.+++.|+.++||+.++++.++||..+|++++++|||+|+++...+.+.+++.++++++||||||||.
T Consensus 81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~ 160 (449)
T COG0439 81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA 160 (449)
T ss_pred cchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999655578889999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+||++|++.+||.+++..++.+....|+++.+++|+||++++++.++++.|+.|+++++++++|+.++.++++.+
T Consensus 161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie 240 (449)
T COG0439 161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240 (449)
T ss_pred CCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceee
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|++.++++.++++.+.+.++++++||.|+.++||+++.+|++||+|+|||+++.++++++++|+|+..+++++++|++
T Consensus 241 eapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~ 320 (449)
T COG0439 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEP 320 (449)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
+++...++...|+++.+|++++++..+|.|++|.+..+..|+.++|+++...+.|-+++++||+++|+++++|.++++|+
T Consensus 321 l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai 400 (449)
T COG0439 321 LSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAI 400 (449)
T ss_pred CCCCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCcccCcchhhheeEEEEecCChHHHH
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhH
Q 009903 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQE 516 (523)
Q Consensus 470 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (523)
.++.+++..+.++|+.||.+|++.++.+++|.+|+++|.|+.+|+..
T Consensus 401 ~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~~ 447 (449)
T COG0439 401 ARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDLDTHFLETHLEP 447 (449)
T ss_pred HHHHHHHHheEecCccCChHHHHHHhcChHhhcCCcchhhhhhcccc
Confidence 99999999999999999999999999999999999999999988653
No 7
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=4.3e-72 Score=593.44 Aligned_cols=448 Identities=51% Similarity=0.865 Sum_probs=416.2
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+|||||+|+|.++.+++++++++|+++++++++++..+.+..++|+.+.+++.+ ..+|.|.+.+++++++.++|+|+|
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHHHHHhCCCEEEE
Confidence 6899999999999999999999999999999888888888899999999987544 378999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCcc-CCCHHHHHHHHHhcCCcEEEEe
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL-LQSTEEAVKLADELGFPVMIKA 228 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~-~~s~~e~~~~~~~~g~P~VvKP 228 (523)
++++++|+..+++.+++.|++++||++++++.+.||..++++++++|||+|+++... ..+.+++.++++++|||+||||
T Consensus 80 g~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP 159 (478)
T PRK08463 80 GYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159 (478)
T ss_pred CCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999998853222 3578999999999999999999
Q ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceee
Q 009903 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (523)
Q Consensus 229 ~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~ 308 (523)
..|+||+|++++++.+|+..+++.........++++.+++|+||+|++|++++++.++.|+++++.+++|+.++.+++..
T Consensus 160 ~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~i 239 (478)
T PRK08463 160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 (478)
T ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceE
Confidence 99999999999999999999998876555555677899999999987899999999988999999999888888888888
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCC
Q 009903 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 388 (523)
Q Consensus 309 ~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~ 388 (523)
...|++.++++.+++|.+.+.+++++||+.|++|+||+++++|++||+|||||+++++++++.++|+|++++++++++|+
T Consensus 240 e~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G~ 319 (478)
T PRK08463 240 EIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGE 319 (478)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcCC
Confidence 88888779999999999999999999999999999999998788999999999999999999999999999999999999
Q ss_pred CCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHH
Q 009903 389 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKA 468 (523)
Q Consensus 389 ~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea 468 (523)
+++..+.....+++++.++++++++...|.|++|.+..+..+..++++++..+..|+.+++++|+++|++|++|+|+++|
T Consensus 320 ~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~~a 399 (478)
T PRK08463 320 ILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLA 399 (478)
T ss_pred CCCCccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCcccccceeEEEEECCCHHHH
Confidence 98776655667899999999999999999999999999977777889999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHHh
Q 009903 469 IERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 518 (523)
Q Consensus 469 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (523)
++++.++++.+.|+|+.||++||+.+|.|++|.+|.++|.||.+|+++|.
T Consensus 400 ~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 449 (478)
T PRK08463 400 VNKLERALKEFVIDGIRTTIPFLIAITKTREFRRGYFDTSYIETHMQELL 449 (478)
T ss_pred HHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhc
Confidence 99999999999999999999999999999999999999999999999984
No 8
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=5.2e-71 Score=583.33 Aligned_cols=446 Identities=66% Similarity=1.083 Sum_probs=411.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+|||||+|+|.++.+++++|+++|++|++++++.+..+++..++|+.+.+++....++|.|.+.++++|+++++|+|+|
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 68999999999999999999999999999998777778889999999998876667778999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++++++|+..+++.++++|++++|+++++++.++||..++++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 g~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~ 160 (449)
T TIGR00514 81 GYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160 (449)
T ss_pred CCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99988899888999999999999999999999999999999999999999997433678999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+|++++++.+||.++++.+.......++...++|||||+|++|++++++.++.|+++.++++++...+.+.+...
T Consensus 161 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (449)
T TIGR00514 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240 (449)
T ss_pred CCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEE
Confidence 99999999999999999999998766544445667899999999878999999999889999998887777776777777
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|++.++++..+++.+.+.+++++||+.|++|+||+++++|.+||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~ 320 (449)
T TIGR00514 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEP 320 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCCC
Confidence 77877799999999999999999999999999999999988889999999999988999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
++........+++++.++++++++.+.|.|.+|.+..+..+..++++++..+..|+.+++.+++++|+||++|+|++||+
T Consensus 321 l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~ 400 (449)
T TIGR00514 321 LSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAI 400 (449)
T ss_pred CCCccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCCEeCccccccceEEEEEcCCHHHHH
Confidence 88765555667899999999999989999999999998778888999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhh
Q 009903 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 515 (523)
Q Consensus 470 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (523)
+++.++++.++|+|+.||++||+.++.|++|.+|.++|.||.+|+.
T Consensus 401 ~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 401 ARMKRALSEFIIDGIKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred HHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 9999999999999999999999999999999999999999998864
No 9
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=8.1e-71 Score=581.18 Aligned_cols=446 Identities=60% Similarity=1.012 Sum_probs=414.8
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+|||||+|+|.++.+++++|+++|++++.++++.+..+++..++|+.+.+++....+.|.+.+.++++|++.++|+|+|
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 58999999999999999999999999999997776777888999999998876666778889999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++++++|+..++.+++..|++++||+++++..++||..++++++++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 ~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~ 160 (447)
T PRK05586 81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160 (447)
T ss_pred CccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999997434578999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+|++++++.+|+.++++.+.......++++.+++|+||+|++|++++++.+..|+++.+++++++.++.+.+...
T Consensus 161 ~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~ 240 (447)
T PRK05586 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 (447)
T ss_pred CCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEE
Confidence 99999999999999999999998776655556667899999999878999999999889999999988888887878888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|++.++++.++++.+.+.+++++||+.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~ 320 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEK 320 (447)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCCC
Confidence 88887799999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
++....+....++++.++++++++...|.|.+|.+..+..++.++++++..+..|+.+++.+|+++|+||++|+|+++|+
T Consensus 321 l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~a~ 400 (447)
T PRK05586 321 LSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAI 400 (447)
T ss_pred CCCcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCCCccCCccCchhheeEEEcCCHHHHH
Confidence 87766566678999999999999989999999999999888888899999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhh
Q 009903 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 515 (523)
Q Consensus 470 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (523)
+++.++++.+.|.|+.||.+||+.+|.||+|.+|.++|.||++|+-
T Consensus 401 ~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 446 (447)
T PRK05586 401 QKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKGTYDTSFIEKKLV 446 (447)
T ss_pred HHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCccccHHhHhhcc
Confidence 9999999999999999999999999999999999999999999863
No 10
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1.4e-70 Score=565.76 Aligned_cols=452 Identities=51% Similarity=0.855 Sum_probs=429.8
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCC-CCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~-~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
.+++||||.++|+++.++.++|.++|++++.+++..|..+.+..-||+.|.++.. ...+.|+++++|++++++.+.|+|
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaI 84 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAI 84 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCee
Confidence 4579999999999999999999999999999999999999999999999999733 334689999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEE
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvK 227 (523)
+|++||++|++.+++.|.+.|+.++||.++.+..+.||...|....++|+|+.|.....+.+.++++++++++|||++||
T Consensus 85 hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiK 164 (1149)
T COG1038 85 HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIK 164 (1149)
T ss_pred cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999887778889999999999999999999
Q ss_pred eCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCcee
Q 009903 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 307 (523)
Q Consensus 228 P~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~ 307 (523)
.+.|+||+|++++.++++|.+.+++++++...+||+++++||+||+.++|+.|+++.|..|+++++.+++|+++++|+++
T Consensus 165 A~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKV 244 (1149)
T COG1038 165 AAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKV 244 (1149)
T ss_pred EccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcC
Q 009903 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (523)
Q Consensus 308 ~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G 387 (523)
.+..|++.++++++++|++.+.++++..||.|..++||.++.+|++||||||||++..|.+++++||+|++..++..+.|
T Consensus 245 VE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G 324 (1149)
T COG1038 245 VEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAG 324 (1149)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred CCCCC------CccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEe-eeecCCcccCCCCCcceEEEEE
Q 009903 388 GKLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMD-SHVYPDYVVPPSYDSLLGKLIV 460 (523)
Q Consensus 388 ~~~~~------~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~-~~~~~G~~v~~~~~~~iG~vi~ 460 (523)
..+.- .+.++..+|+++.||+..+||..+|.|..|+|..+...++.+||+| -+-+.|..|+++||+++=.+.+
T Consensus 325 ~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~ 404 (1149)
T COG1038 325 ATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTC 404 (1149)
T ss_pred CccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEee
Confidence 88752 2344778899999999999999999999999999999999999997 6778899999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHHhhh
Q 009903 461 WAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAV 520 (523)
Q Consensus 461 ~g~s~~ea~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (523)
||.++++|.+||.+++.+++|+|+.||++|+..++.||.|.+|.|+|+||-.+-+=++.|
T Consensus 405 ~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g~y~T~FId~tPeLf~~~ 464 (1149)
T COG1038 405 WGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSGRYTTSFIDTTPELFQFP 464 (1149)
T ss_pred cCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccCcceeeeccCCHHHhccc
Confidence 999999999999999999999999999999999999999999999999998874444433
No 11
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.6e-68 Score=565.90 Aligned_cols=446 Identities=61% Similarity=1.020 Sum_probs=409.3
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|||||||+|+|.++.+++++|+++|+++++++.+.+..+++..++|+.+.+++..+.++|.|.+.+++++++.++|+|+|
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999999999998777777788899999998766666678889999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++++.+|+..+++.++++|++++||+++++..++||..++++|+++|||+|+++...+.+.+++.+++++++||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~ 160 (451)
T PRK08591 81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160 (451)
T ss_pred CCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99988898888999999999999999999999999999999999999999987433678999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+|++++++.+|+.++++.+.......++++.+++||||+|.+|++++++.|+.|+++.++.+++...+.+.+...
T Consensus 161 ~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PRK08591 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 (451)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEE
Confidence 99999999999999999999998776555556667899999999878999999999889999988887777776767777
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|++.++++..+++.+.+.+++++||+.|++|+||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~ 320 (451)
T PRK08591 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEP 320 (451)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCCC
Confidence 77776699999999999999999999999999999999978889999999999988889999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
++....+....++++.++++++++...|.|.+|.+..+..++.++++++..+..|+.+++.+++++|+|+++|+|+++|.
T Consensus 321 l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~~~ 400 (451)
T PRK08591 321 LSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAI 400 (451)
T ss_pred CCCcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCCCCcCccccCcceEEEEEcCCHHHHH
Confidence 87655555667899999999999999999999999999878778899999999999999988989999999999999999
Q ss_pred HHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhh
Q 009903 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 515 (523)
Q Consensus 470 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (523)
+++.++++.++|+|+.||.+|++.++.|++|.+|.|+|+||.+|++
T Consensus 401 ~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 446 (451)
T PRK08591 401 ARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLA 446 (451)
T ss_pred HHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCCCcccHHHHhhhh
Confidence 9999999999999999999999999999999999999999998854
No 12
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=1.1e-68 Score=605.12 Aligned_cols=444 Identities=50% Similarity=0.827 Sum_probs=418.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCC---CCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA---PSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~---~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
||||.++|+++.+++++|+++|+++++++++.+..+.+...+|+.+.+++. ...++|.|.+.+++++++.++|+|+|
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 599999999999999999999999999999999889999999999988644 23468999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++|+++|+..+++.+++.|++++||++++++.+.||..++++++++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999997434678999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+|+++|++.+|+.++++.+..+....++++.++||+||+|++|+++++++|+.|+++++.+++|+.++++.+...
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999888777778888999999999889999999999999999999999999988888888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|++.++++.+++|.+.+.++++++||.|++++||+++++|++||||||||++++++++++++|+|+.+.+++++.|.+
T Consensus 241 ~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~ 320 (1143)
T TIGR01235 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGAS 320 (1143)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCCC
Confidence 88987799999999999999999999999999999999988889999999999998999999999999999999999999
Q ss_pred CC------CCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeee-ecCCcccCCCCCcceEEEEEEc
Q 009903 390 LR------YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSH-VYPDYVVPPSYDSLLGKLIVWA 462 (523)
Q Consensus 390 ~~------~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~-~~~G~~v~~~~~~~iG~vi~~g 462 (523)
++ +.+..+...|+++.||+++++|..+|.|.+|.|..+..++.+++|+|.. .+.|..|+++||+.+++++++|
T Consensus 321 L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~ 400 (1143)
T TIGR01235 321 LPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWA 400 (1143)
T ss_pred CCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeC
Confidence 88 4556677889999999999999999999999999999998899999887 6789999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHH
Q 009903 463 PTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (523)
Q Consensus 463 ~s~~ea~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (523)
+|+++|++++.++++++.|+|+.||++||+.+|.||+|.+|.++|.||.+| +||
T Consensus 401 ~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~~~~t~~~~~~-~~l 454 (1143)
T TIGR01235 401 STPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDGSYDTRFIDTT-PEL 454 (1143)
T ss_pred CCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCCCccchhhhcC-hhh
Confidence 999999999999999999999999999999999999999999999999999 787
No 13
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=6.5e-68 Score=559.76 Aligned_cols=442 Identities=55% Similarity=0.929 Sum_probs=403.5
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+|||||+|+|+++.+++++|+++|++|++++++.+..+++..+||+.+.+++....++|.|.+.++++|++.++|+|+|+
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg 83 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPG 83 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEEC
Confidence 79999999999999999999999999999998888888999999999999777677789999999999999999999999
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~ 230 (523)
+|+++++..+++.++++|++++||+++++..++||..++++|+++|||+|+++...+.+.+++.++++++|||+||||..
T Consensus 84 ~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~~ 163 (445)
T PRK08462 84 YGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAA 163 (445)
T ss_pred CCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99989999999999999999999999999999999999999999999999974346789999999999999999999999
Q ss_pred CCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEe
Q 009903 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310 (523)
Q Consensus 231 g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~ 310 (523)
|+||+|++++++.+||.+++.....+....++++.+++|+||+|++|++++++.+..|+++.++++++...+.+.+....
T Consensus 164 g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~~ 243 (445)
T PRK08462 164 GGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEE 243 (445)
T ss_pred CCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEEE
Confidence 99999999999999999999876655444456678999999998789999999988899999998888877767767777
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCCC
Q 009903 311 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 390 (523)
Q Consensus 311 ~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~~ 390 (523)
.|+..++++..+++.+.+.+++++||+.|++++||+++++|++||+|||||+++++.+++.++|+|++++++++++|.++
T Consensus 244 ~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~l 323 (445)
T PRK08462 244 SPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEEL 323 (445)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCCCCc
Confidence 78766899999999999999999999999999999999877799999999999888888888999999999999999987
Q ss_pred CCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHHH
Q 009903 391 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIE 470 (523)
Q Consensus 391 ~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~~ 470 (523)
+... .....++++.++++++++. .|.|.+|.+..+..++...++++.....|+.+++.+++++|+|+++|+|+++|.+
T Consensus 324 ~~~~-~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ea~~ 401 (445)
T PRK08462 324 PSQE-SIKLKGHAIECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIA 401 (445)
T ss_pred cccc-ccCCceeEEEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEccCcCCCCEeChhhccCccEEEEEcCCHHHHHH
Confidence 6432 3346789999999998774 4888999999887776677898888889999999988899999999999999999
Q ss_pred HHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchh
Q 009903 471 RMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 514 (523)
Q Consensus 471 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (523)
++.++++.++|.|+.||++||+.+|.||+|.+|.++|.||.+|+
T Consensus 402 ~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 402 KMKRALKEFKVEGIKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred HHHHHHHhcEEECccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 99999999999999999999999999999999999999999985
No 14
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.6e-67 Score=598.98 Aligned_cols=448 Identities=51% Similarity=0.854 Sum_probs=417.3
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCC-CCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~-~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
.|+|||||+|+|+++.+++++|+++|+++++++++.+..+++...+|+.+.++.. ...++|.|.+.+++++++.++|+|
T Consensus 3 ~~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI 82 (1146)
T PRK12999 3 KKIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAI 82 (1146)
T ss_pred CcccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEE
Confidence 4689999999999999999999999999999998888889999999999988643 234688999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEE
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvK 227 (523)
+|++|+++|+..+++.+++.|++++||++++++.+.||..+|++++++|||+|+++...+.+.+++.++++++|||+|||
T Consensus 83 ~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVK 162 (1146)
T PRK12999 83 HPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLK 162 (1146)
T ss_pred EeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999998874226899999999999999999999
Q ss_pred eCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCcee
Q 009903 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 307 (523)
Q Consensus 228 P~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~ 307 (523)
|..|+||+|+++|++.+||.++++.+..++...++++.+++|+||+|.+|+++++++|++|+++++.+++|+.++++++.
T Consensus 163 P~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ 242 (1146)
T PRK12999 163 ASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 (1146)
T ss_pred ECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccE
Confidence 99999999999999999999999998877777788889999999999889999999999999999999999999999988
Q ss_pred eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcC
Q 009903 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (523)
Q Consensus 308 ~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G 387 (523)
....|++.++++.++++.+.+.++++++||.|++++||+++++|++||||||||+++.+.+++.++|+|++++++++++|
T Consensus 243 ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G 322 (1146)
T PRK12999 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEG 322 (1146)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCC
Confidence 88888877999999999999999999999999999999999887799999999999888899999999999999999999
Q ss_pred CCCCCC------ccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeec-CCcccCCCCCcceEEEEE
Q 009903 388 GKLRYK------QEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVY-PDYVVPPSYDSLLGKLIV 460 (523)
Q Consensus 388 ~~~~~~------~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~-~G~~v~~~~~~~iG~vi~ 460 (523)
.+++.. +..+...|+++.||++++++..+|.|.+|.|..+..++.++++++..+. .|..++++||+++++|++
T Consensus 323 ~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~ 402 (1146)
T PRK12999 323 ATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTA 402 (1146)
T ss_pred CCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEE
Confidence 998652 3345567999999999999999999999999999888888999988775 799999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhHH
Q 009903 461 WAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 517 (523)
Q Consensus 461 ~g~s~~ea~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (523)
+|+|+++|++++.++++.++|+|+.||++||+.+|.||+|.+|.++|+||.+| ++|
T Consensus 403 ~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~~~~t~~~~~~-~~l 458 (1146)
T PRK12999 403 WGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAGDYTTSFIDET-PEL 458 (1146)
T ss_pred EcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCCCccchhhhcC-hhh
Confidence 99999999999999999999999999999999999999999999999999999 887
No 15
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=4.6e-62 Score=516.76 Aligned_cols=444 Identities=51% Similarity=0.827 Sum_probs=391.0
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+|||||+|+|..+.+++++|+++|+++++++++.+..+....++|+++.+++....+++.|.+.+++++++.++|+|+|
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p 80 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP 80 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEe
Confidence 68999999999999999999999999999998777777778888999998865556678889999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++++.+|...+++.++.+|++++|++.+++..++||..++++|+++|||+|++....+.+.+++.+++++++||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~ 160 (450)
T PRK06111 81 GYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKAS 160 (450)
T ss_pred CCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 98887888888899999999999999999999999999999999999999986223458999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
.|+||+||+++++.+|+.++++.+.......++++++++||||+|.+|++++++.++.|+++.+...++.....+.....
T Consensus 161 ~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (450)
T PRK06111 161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 (450)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEE
Confidence 99999999999999999999988654433334567899999999978999999998888888887766655555555666
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|++.++++..+++.+++.+++++||+.|++|+||+++++|++||+|||||+++++++++.++|+|++++++++++|.+
T Consensus 241 ~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~ 320 (450)
T PRK06111 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEK 320 (450)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCCC
Confidence 66776688999999999999999999999999999999988889999999999888889999999999999999999998
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
++....+....+++++.++|++++. .+.|..|.+..+..+..++++++..+..|+++.+..++++|+|+++|+|.++|.
T Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~ 399 (450)
T PRK06111 321 LSFTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAI 399 (450)
T ss_pred CCCccccCCcCceEEEEEEecCCCC-CcccCCCeeCeEecCCCCCEEEEecccCCCEeChhhcccceEEEEEeCCHHHHH
Confidence 8765444455678888999987653 456778888777545556688888888899998877788999999999999999
Q ss_pred HHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchh
Q 009903 470 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 514 (523)
Q Consensus 470 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (523)
+++.++++.++++|+.||+++|+.+|.+|+|..|.++|+|+.+.+
T Consensus 400 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (450)
T PRK06111 400 SRLHDALEELKVEGIKTNIPLLLQVLEDPVFKAGGYTTGFLTKQL 444 (450)
T ss_pred HHHHHHHHhCEEeCccCCHHHHHHHhcChhhcCCcccchHHhhhh
Confidence 999999999999999999999999999999999999999997763
No 16
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=4.7e-63 Score=500.60 Aligned_cols=446 Identities=46% Similarity=0.773 Sum_probs=425.8
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCC-CCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~-~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
+++|||.++|+++.++.+++.++|.+++.+++..|..+.+..-+|+.|.++.. +....|..+++|+++++++++|+|+|
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 37999999999999999999999999999999999999999999999998743 33457889999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
++||++|+..+++.+...|+.++|||++.+..+.||...|.+.-++|+|+.|.....+++.+++.+|+++.|+|+|+|..
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
+|+||+|+++|++.++++++|+++.++...+||++.++||+||+-++++.|+.+.|..|+++++.+++|+++++|+++.+
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
+.|++.++++.+++|..-+.++++..||....++||.+|..|+.||||||||++..+..++.++|+|++..+++++.|..
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t 352 (1176)
T KOG0369|consen 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS 352 (1176)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999988
Q ss_pred CC---CCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEE-eeeecCCcccCCCCCcceEEEEEEcCCH
Q 009903 390 LR---YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRM-DSHVYPDYVVPPSYDSLLGKLIVWAPTR 465 (523)
Q Consensus 390 ~~---~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~-~~~~~~G~~v~~~~~~~iG~vi~~g~s~ 465 (523)
++ +.+..+...|++|.||+..+||.++|-|..|.++.+..-.+.++|+ ....+.|..|+|.||+.+-.+++.|.|.
T Consensus 353 Lp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~ 432 (1176)
T KOG0369|consen 353 LPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTY 432 (1176)
T ss_pred cccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCcc
Confidence 74 5567778889999999999999999999999999998888889998 4566789999999999999999999999
Q ss_pred HHHHHHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccchhhH
Q 009903 466 EKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQE 516 (523)
Q Consensus 466 ~ea~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (523)
+-+..|+.+++.+++|+|+.||++|++.+|.++.|-.|.|+|.||-+|-+=
T Consensus 433 ~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g~~~T~FIDe~PeL 483 (1176)
T KOG0369|consen 433 EIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEGTVDTTFIDETPEL 483 (1176)
T ss_pred HHHHHHHHHHHHHHhhcceecCcHHHHHHhcCcceeeeeeeeEEecCChHH
Confidence 999999999999999999999999999999999999999999999988543
No 17
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=8.3e-62 Score=555.31 Aligned_cols=439 Identities=48% Similarity=0.806 Sum_probs=405.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+|||||+|+|.++++++++|+++|+++++++++.+..+.+..++|+.+.+++.+..++|.|.+.|+++|++.++|+|+|+
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 47999999999999999999999999999998888888889999999998877778899999999999999999999999
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~ 230 (523)
+++++|+..+++.+++.|++++||++++++.+.||..+|++|+++|||+|+++ ..+.|.+++.++++++|||+||||..
T Consensus 81 ~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~~ 159 (1201)
T TIGR02712 81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTA 159 (1201)
T ss_pred CcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEECC
Confidence 99999998899999999999999999999999999999999999999997743 57899999999999999999999999
Q ss_pred CCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEe
Q 009903 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 310 (523)
Q Consensus 231 g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~ 310 (523)
|+||+|+++|++.+|+.++++.+.......+++.+++|||||+|.+|++++++.|++|+++.+++++|+.++++.+....
T Consensus 160 ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee 239 (1201)
T TIGR02712 160 GGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE 239 (1201)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEE
Confidence 99999999999999999999988766655667778999999997699999999999999999999999888888888888
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC-CCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 311 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 311 ~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~-~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
.|++.++++..+++.+.+.++++++||.|++++||++++ +|++||||||||+++.+++++.++|+|++++++++++|.+
T Consensus 240 ~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~~ 319 (1201)
T TIGR02712 240 TPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGEL 319 (1201)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCCC
Confidence 888779999999999999999999999999999999984 5779999999999988999999999999999999999998
Q ss_pred CCCCcccc--ccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHH
Q 009903 390 LRYKQEDI--VLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (523)
Q Consensus 390 ~~~~~~~~--~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~e 467 (523)
++...... ...++++.+++|++++.++|.|+.|.+..+..+ .+++++.++..|++|.+++|+++|+|+++|+|+++
T Consensus 320 ~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p--~~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~e 397 (1201)
T TIGR02712 320 PDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFP--DDVRVDTWVETGTEVSPEYDPMLAKIIVHGSDRED 397 (1201)
T ss_pred CCccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECC--CeEEEeceecCCCEECCccCCCeEEEEEEECCHHH
Confidence 76653322 456899999999999999999999999877554 35888999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCeEeecccCHHHHHHhcCCccccCCccccCcccc
Q 009903 468 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 512 (523)
Q Consensus 468 a~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (523)
|+++++++++.++|.|+.||++|++.++.+++|.+|.++|.|+.+
T Consensus 398 A~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~~~~t~~l~~ 442 (1201)
T TIGR02712 398 AILKLHQALAETRVYGIETNLDYLRSILSSETFRSAQVSTRTLNS 442 (1201)
T ss_pred HHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCCCccchhhhh
Confidence 999999999999999999999999999999999999999999964
No 18
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=5.4e-47 Score=408.52 Aligned_cols=444 Identities=36% Similarity=0.579 Sum_probs=397.5
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcE--------EEEecCC---CCCCccccccCeeEEcCCCCCCCCCCCHHHHHH
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPC--------VAVYSTI---DKDALHVKLADESVCIGEAPSSQSYLLIPNVLS 137 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~v--------i~v~~~~---~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~ 137 (523)
+..++|||.+.|--+..-+++.++--|++ .++-.++ ...+.+.++||+++.++...+.+.|.+.+.|++
T Consensus 52 rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVdlIvd 131 (2196)
T KOG0368|consen 52 RVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVDLIVD 131 (2196)
T ss_pred ceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCCCcccHHHHHH
Confidence 44799999999988888888887743322 1221222 245667889999999988889999999999999
Q ss_pred HHHHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCC-------------
Q 009903 138 AAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD------------- 204 (523)
Q Consensus 138 ~~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~------------- 204 (523)
++++..+|+|+++||..+|++.+.+.+...|+-++||+..++..+.||....-..+.+|+|+.++.-
T Consensus 132 iAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~ 211 (2196)
T KOG0368|consen 132 IAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTN 211 (2196)
T ss_pred HHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999887531
Q ss_pred -----------ccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccC
Q 009903 205 -----------GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273 (523)
Q Consensus 205 -----------~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~ 273 (523)
..+.|.+|..+.++++|||++||...|+||+|+++|++.+|+...|++...+. ++.++++.+...
T Consensus 212 ~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~Ev----PGSPIFlMK~a~ 287 (2196)
T KOG0368|consen 212 LVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEV----PGSPIFLMKLAD 287 (2196)
T ss_pred eEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhhC----CCCceeeeeccc
Confidence 22467899999999999999999999999999999999999999999987764 568999999999
Q ss_pred CCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEe-CCCC
Q 009903 274 NPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGS 352 (523)
Q Consensus 274 G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~-~~G~ 352 (523)
+.+|+.|+.++|+.|+++.+..++|+++++++++++..|+.-.+.+..++|.+.|.++++.+||.++.+||+.+. ++|+
T Consensus 288 ~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~ 367 (2196)
T KOG0368|consen 288 QARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGE 367 (2196)
T ss_pred CcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCc
Confidence 999999999999999999999999999999999999999987889999999999999999999999999999999 5899
Q ss_pred EEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCCCCCCc---------------------cccccceeEEEEEEeeC
Q 009903 353 FYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQ---------------------EDIVLQGHSIECRINAE 411 (523)
Q Consensus 353 ~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~~~~~~---------------------~~~~~~~~ai~~~~~a~ 411 (523)
+||+|.|||++..+|.+++++|+|+...+++.++|.|+.-.+ ....++||++.+|+..|
T Consensus 368 fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsE 447 (2196)
T KOG0368|consen 368 YYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITSE 447 (2196)
T ss_pred EEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEeecc
Confidence 999999999999999999999999999999999999873221 11235789999999999
Q ss_pred CCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHHHHHHHHhhcCeEee-cccCHHH
Q 009903 412 DPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPTTIEY 490 (523)
Q Consensus 412 ~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~-~~~~~~~ 490 (523)
+|..+|.|+.|+|.++.-+....++--+.+..|.-|..+.|+-+||+.++|+|+++|++.|--+++++.|+| ++|+.+|
T Consensus 448 dPddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeY 527 (2196)
T KOG0368|consen 448 DPDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRTTVEY 527 (2196)
T ss_pred CCCCCcCCCCCeeEEeccCCCCCeeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheeeccccCchHHH
Confidence 999999999999999966666777666777888889888899999999999999999999999999999998 9999999
Q ss_pred HHHhcCCccccCCccccCcccchhhH
Q 009903 491 HKLILDVEDFKNGKVDTAFIPKHEQE 516 (523)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (523)
+-.||..++|.+-.++|+|+-+....
T Consensus 528 LI~LLet~dF~~N~i~TgWLD~~Ia~ 553 (2196)
T KOG0368|consen 528 LIDLLETEDFESNKIDTGWLDKRIAM 553 (2196)
T ss_pred HHHHHHhhhhhhccCcchhHHHHHHH
Confidence 99999999999999999998765543
No 19
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=8.5e-45 Score=376.71 Aligned_cols=375 Identities=17% Similarity=0.205 Sum_probs=292.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g 152 (523)
||||+|+|..+..++++|+++|++|++++++ +.++...++|+.+.++ +.|.+.+.++++++++|+|++..+
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~--~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~v~~~~e 71 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRY--ANAPAMQVAHRSYVIN-------MLDGDALRAVIEREKPDYIVPEIE 71 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCC--CCCchhhhCceEEEcC-------CCCHHHHHHHHHHhCCCEEEeccC
Confidence 5999999999999999999999999999654 4556678899988654 678999999999999999998764
Q ss_pred cccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHH-HHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCC
Q 009903 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (523)
Q Consensus 153 ~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l-~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g 231 (523)
.. .....+.+++.|+++ .+++++++++.||..+++++ +++|||+|++ ..+.+.+++.++++++|||+|+||..|
T Consensus 72 ~v--~~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~VvKP~~g 146 (380)
T TIGR01142 72 AI--ATDALFELEKEGYFV-VPNARATKLTMNREGIRRLAAEELGLPTSRY--MFADSLDELREAVEKIGYPCVVKPVMS 146 (380)
T ss_pred cc--CHHHHHHHHhcCCee-CCCHHHHHHhhCHHHHHHHHHHHCCCCCCCc--eEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 32 223345678889875 58999999999999999986 8999999999 789999999999999999999999999
Q ss_pred CCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEec
Q 009903 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311 (523)
Q Consensus 232 ~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~~ 311 (523)
++|+||++|++.+|+.++++.+..... ..++++|+||||+|..|+++.++.+.+|++....... .............
T Consensus 147 ~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~ 223 (380)
T TIGR01142 147 SSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFCAPIG-HRQIDGDYHESWQ 223 (380)
T ss_pred cCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-eEEeCCeeEEEEC
Confidence 999999999999999999988653210 1235899999999768999998876666655432211 1122222233446
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCCCC
Q 009903 312 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (523)
Q Consensus 312 p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~~~ 391 (523)
|+. ++++..+++.+++.+++++||+.|++|+||++++++ +||+|||||++|+.......+|+|++++++++++|.+++
T Consensus 224 p~~-l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~-~~viEinpR~~~~~~~~~~~~g~~~~~~~~r~~~G~~~~ 301 (380)
T TIGR01142 224 PQE-MSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDE-VIFSEVSPRPHDTGMVTLISQGLSEFALHVRAILGLPIP 301 (380)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCc-EEEEEeecCCCCCceEEeeecCCCHHHHHHHHHcCCCCC
Confidence 665 899999999999999999999999999999999776 999999999998754444456999999999999999876
Q ss_pred CCccccccceeEEEEEEeeCCCCCCCCCCCceEE---EE-ecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHH
Q 009903 392 YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRIT---AY-LPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (523)
Q Consensus 392 ~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~---~~-~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~e 467 (523)
... ..+.+++..+++... |.+. .+ .....+++.+.....+|+. ..+++|+|++.|+|.++
T Consensus 302 ~~~----~~~~~~~~~i~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~G~v~~~~~s~~~ 365 (380)
T TIGR01142 302 GIP----QLGPAASAVIKAKVT--------GYSPAFRGLEKALSVPNTQVRLFGKPEAY----VGRRLGVALATAKSVEA 365 (380)
T ss_pred Ccc----ccCCceEEEEEcccc--------cccchhhHHHHHHcCCCCEEEECCCCcCC----CCCcCEEEEEecCCHHH
Confidence 432 344466666665421 2221 11 1112355554433344533 23569999999999999
Q ss_pred HHHHHHHHhhcCeEe
Q 009903 468 AIERMKRALNDTIIT 482 (523)
Q Consensus 468 a~~~~~~~~~~i~i~ 482 (523)
+.++++.+.+.|+++
T Consensus 366 ~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 366 ARERAEEVAHAVEVR 380 (380)
T ss_pred HHHHHHHHHhhccCC
Confidence 999999999988763
No 20
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=5.9e-44 Score=367.85 Aligned_cols=364 Identities=20% Similarity=0.306 Sum_probs=293.0
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+++|+|+|+|..+..++.+|+++|++|++++ +++.++...++|+.+.. ++.|.+.+.++++ .+|+|...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d--~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a~--~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLD--PDPDSPAAQVADEVIVA-------DYDDVAALRELAE--QCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEe--CCCCCchhHhCceEEec-------CCCCHHHHHHHHh--cCCEEEeC
Confidence 5789999999999999999999999999995 45556778889998865 3889999999987 58988643
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~ 230 (523)
.+ .-.....+.+++.+ .++|+++++..++||..+|++|+++|||+|++ ..+.+.+++.++.+++|||+|+||..
T Consensus 71 ~e--~i~~~~l~~l~~~~--~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~--~~v~s~~~l~~~~~~~g~P~vlKp~~ 144 (372)
T PRK06019 71 FE--NVPAEALDALAARV--PVPPGPDALAIAQDRLTEKQFLDKLGIPVAPF--AVVDSAEDLEAALADLGLPAVLKTRR 144 (372)
T ss_pred cC--CCCHHHHHHHhcCC--eeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCc--eEeCCHHHHHHHHHHcCCcEEEEeCC
Confidence 32 12234445555553 35799999999999999999999999999999 78999999999999999999999998
Q ss_pred C-CCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 231 G-GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 231 g-~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
+ .+|+|++++++.+|+.++++.+ +..++|+|+||++.+|+++.++++.+|++..+...+. ....+.....
T Consensus 145 ~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e~-~~~~gi~~~~ 215 (372)
T PRK06019 145 GGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVEN-VHRNGILRTS 215 (372)
T ss_pred CCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCccc-EEeCCEEEEE
Confidence 6 5899999999999999988865 2478999999996699999999988888887755442 2233333334
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
..|+. ++++..+++.+++.+++++||+.|++++||+++++|++||+|||||++++..++..++++|++++++++++|.+
T Consensus 216 ~~pa~-~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Glp 294 (372)
T PRK06019 216 IAPAR-ISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGLP 294 (372)
T ss_pred ECCCC-CCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCCC
Confidence 56775 89999999999999999999999999999999988999999999999998778888999999999999999998
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
++.. .....++|+.+.+.+. . ..+ +..+ ...|++. +++|.....++ .+++|||.+.|+|.+++.
T Consensus 295 l~~~----~~~~~~~m~nilg~~~---~--~~~-~~~~--~~~~~~~--~~~ygk~~~~~--~rk~Ghv~~~~~~~~~~~ 358 (372)
T PRK06019 295 LGTT----RLLSPAVMVNLLGDDW---L--EPR-WDAL--LALPGAH--LHLYGKAEARP--GRKMGHVTVLGDDVEALL 358 (372)
T ss_pred CCCc----cccCceEEEEEECchh---h--hhH-HHHH--hhCCCCE--EEECCCCCCCC--CCceEEEEeecCCHHHHH
Confidence 8632 3445588888876421 0 000 1111 1124444 56775444444 578999999999999999
Q ss_pred HHHHHHhh
Q 009903 470 ERMKRALN 477 (523)
Q Consensus 470 ~~~~~~~~ 477 (523)
++++.+..
T Consensus 359 ~~~~~~~~ 366 (372)
T PRK06019 359 AKLEALAP 366 (372)
T ss_pred HHHHHHHh
Confidence 99999877
No 21
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=6e-44 Score=383.07 Aligned_cols=381 Identities=21% Similarity=0.253 Sum_probs=300.5
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
.+.|+|+|+|+|.++..++++|+++|+++++++. ++.++...++|+.+.. ++.|.+.+.+++++ +|+|.
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~--~~~apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~dvIt 88 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDP--LEDCPASSVAARHVVG-------SFDDRAAVREFAKR--CDVLT 88 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC--CCCCchhhhCceeeeC-------CCCCHHHHHHHHHH--CCEEE
Confidence 4578999999999999999999999999999954 4556778889988864 37889999999987 78876
Q ss_pred eCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEe
Q 009903 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP 228 (523)
...+. -.....+.+++.|+++ +|+++++..++||..+|++|+++|||+|+| ..+.+.+++.++.+++|||+||||
T Consensus 89 ~e~e~--v~~~~l~~le~~gi~v-~ps~~al~i~~DK~~~K~~l~~~GIptp~~--~~v~~~~el~~~~~~ig~P~VvKP 163 (577)
T PLN02948 89 VEIEH--VDVDTLEALEKQGVDV-QPKSSTIRIIQDKYAQKVHFSKHGIPLPEF--MEIDDLESAEKAGDLFGYPLMLKS 163 (577)
T ss_pred EecCC--CCHHHHHHHHhcCCcc-CCCHHHHHHhcCHHHHHHHHHHCCcCCCCe--EEeCCHHHHHHHHHhcCCcEEEEe
Confidence 54322 1244558889999874 699999999999999999999999999999 778899999999999999999999
Q ss_pred CCCC-CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCcee
Q 009903 229 TAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 307 (523)
Q Consensus 229 ~~g~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~ 307 (523)
..++ +|+|++++++.+|+.++++.+... +..+|+|+||++.+|+++.++++.+|++..+...+. ........
T Consensus 164 ~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~------~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~~E~-~~~~~~~~ 236 (577)
T PLN02948 164 RRLAYDGRGNAVAKTEEDLSSAVAALGGF------ERGLYAEKWAPFVKELAVMVARSRDGSTRCYPVVET-IHKDNICH 236 (577)
T ss_pred CCCCCCCCCeEEECCHHHHHHHHHHhhCC------CCcEEEEecCCCCeEEEEEEEECCCCCEEEecCccc-EEECCeeE
Confidence 9877 799999999999999998876422 368999999998899999999987788776644322 22223333
Q ss_pred eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcC
Q 009903 308 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (523)
Q Consensus 308 ~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G 387 (523)
....|+. ++++..+++.+++.+++++||+.|++|+||+++++|++||+|||||+|++..++..++++|++++++++++|
T Consensus 237 ~~~~Pa~-l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa~lG 315 (577)
T PLN02948 237 VVEAPAN-VPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRAVLG 315 (577)
T ss_pred EEEECCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHHHcC
Confidence 3346775 999999999999999999999999999999999999999999999999776677778999999999999999
Q ss_pred CCCCCCccccccceeEEEEEEeeCCCC-CCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHH
Q 009903 388 GKLRYKQEDIVLQGHSIECRINAEDPF-KNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTRE 466 (523)
Q Consensus 388 ~~~~~~~~~~~~~~~ai~~~~~a~~~~-~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ 466 (523)
.+++... ....+++++.++++... .++.+....+.. ....|+++ ++++.....++ .+++|||+++|+|.+
T Consensus 316 lpl~~~~---~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~--~~~~p~~~--v~~ygk~~~r~--~rkmGhV~~~g~~~~ 386 (577)
T PLN02948 316 LPLGDTS---MKVPAAIMYNILGEDEGEAGFRLAHQLMGR--ALNIPGAS--VHWYGKPEMRK--QRKMGHITVVGPSAA 386 (577)
T ss_pred CCCCCcc---ccCCcEEEEEEeccccccccccchhhHHHH--HhhCCCCE--EEEecCCCCCC--CCeeEEEEEecCCHH
Confidence 9886543 23345788888876321 111111111111 11224444 34443222222 367999999999999
Q ss_pred HHHHHHHHHhhcCeEe
Q 009903 467 KAIERMKRALNDTIIT 482 (523)
Q Consensus 467 ea~~~~~~~~~~i~i~ 482 (523)
++.++++.+++.+.+.
T Consensus 387 e~~~~~~~~~~~~~~~ 402 (577)
T PLN02948 387 EVEARLDQLLAEESAD 402 (577)
T ss_pred HHHHHHHHHHhhhccC
Confidence 9999999999977653
No 22
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=4.8e-43 Score=365.45 Aligned_cols=382 Identities=18% Similarity=0.242 Sum_probs=289.1
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
..|+|||+|+|..+..++++++++|+++++++.++ ..+...++|..+.++ +.|.+.++++++++++|+|++
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~--~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~vi~ 81 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYA--NAPAMQVAHRSHVID-------MLDGDALRAVIEREKPDYIVP 81 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC--CCchHHhhhheEECC-------CCCHHHHHHHHHHhCCCEEEE
Confidence 35789999999999999999999999999996544 455566888877654 678899999999999999998
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHH-HCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEe
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMK-NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~-~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP 228 (523)
..+.. .......+++.|+++. |+.+++++++||..+|+++. ++|||+|++ ..++|.+++.+++++++||+|+||
T Consensus 82 ~~e~~--~~~~~~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~--~~~~s~~~l~~~~~~~g~P~VvKP 156 (395)
T PRK09288 82 EIEAI--ATDALVELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPY--RFADSLEELRAAVEEIGYPCVVKP 156 (395)
T ss_pred eeCcC--CHHHHHHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCc--eEECCHHHHHHHHHhcCCCEEEEe
Confidence 76532 1233455667788754 89999999999999999994 799999999 789999999999999999999999
Q ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceee
Q 009903 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (523)
Q Consensus 229 ~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~ 308 (523)
..|++|+||++|++.+|+.++++.+..... -....+||||||++..|+++.++.+.+|....+...... ........
T Consensus 157 ~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 233 (395)
T PRK09288 157 VMSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIGHR-QEDGDYRE 233 (395)
T ss_pred CCCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcccE-EECCEEEE
Confidence 999999999999999999999988654321 013689999999954899999998866555555332211 11122222
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCC
Q 009903 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 388 (523)
Q Consensus 309 ~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~ 388 (523)
...|+. ++++..+++.+++.+++++||+.|++|+||+++++| +|++|||||++++........|+|++++++++++|.
T Consensus 234 ~~~p~~-l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~-~~viEinpR~~~~~~~~~~~~g~~~~~~~~~~~lG~ 311 (395)
T PRK09288 234 SWQPQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDE-VYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGL 311 (395)
T ss_pred EECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCe-EEEEEecCCCCCCcceeeeecccCHHHHHHHHHcCC
Confidence 345664 899999999999999999999889999999999876 999999999988754444445999999999999998
Q ss_pred CCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEe-cCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHH
Q 009903 389 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYL-PAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 467 (523)
Q Consensus 389 ~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~-~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~e 467 (523)
+++... ....+++..++++..... ..+..+. ....+++.+ +++. .. .....+++|+|++.|+|.++
T Consensus 312 ~~~~~~----~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~g~~~--~~~~-k~-~~~~~~~lG~v~~~g~~~~~ 378 (395)
T PRK09288 312 PIPDIR----LYSPAASAVILAEGESAN-----PSFDGLAEALAVPGTDV--RLFG-KP-EIRGGRRMGVALATGEDVEE 378 (395)
T ss_pred CCCccc----ccCCceeEEEeccccccc-----cchhhHHHHhcCCCCEE--EEec-CC-CCCCCCeeEEEEeecCCHHH
Confidence 763321 233345555555422110 0011111 112244432 2332 11 12224569999999999999
Q ss_pred HHHHHHHHhhcCeEee
Q 009903 468 AIERMKRALNDTIITG 483 (523)
Q Consensus 468 a~~~~~~~~~~i~i~~ 483 (523)
|.++++++.+.|+++|
T Consensus 379 a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 379 AREKAKEAASKVKVVG 394 (395)
T ss_pred HHHHHHHHHhheeecc
Confidence 9999999999999976
No 23
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=4.9e-43 Score=399.65 Aligned_cols=378 Identities=20% Similarity=0.302 Sum_probs=302.0
Q ss_pred CccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHH
Q 009903 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (523)
Q Consensus 70 ~~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~ 138 (523)
.+|||||+|+|.+ |.+++++|+++|++|++++++++.......++|+.+. . +.+.+.+.++
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi-~-------p~~~e~v~~i 93 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYI-A-------PMTPELVEQV 93 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEe-C-------CCCHHHHHHH
Confidence 4789999999985 6689999999999999998777655556678999774 3 4567889999
Q ss_pred HHHcCCCEEEeCCCccc-ccH--HH--HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHH
Q 009903 139 AISRGCTMLHPGYGFLA-ENA--VF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (523)
Q Consensus 139 ~~~~~id~Vi~~~g~~~-e~~--~~--a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~ 213 (523)
++++++|+|+|+.|... .+. .+ ...++.+|++++|++++++..+.||..++++|+++|+|+|++ ..+.+.+++
T Consensus 94 i~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~--~~v~s~eea 171 (1102)
T PLN02735 94 IAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPS--GIATTLDEC 171 (1102)
T ss_pred HHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCe--eEeCCHHHH
Confidence 99999999999764321 221 11 246789999999999999999999999999999999999999 788999999
Q ss_pred HHHHHhcC-CcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEE
Q 009903 214 VKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (523)
Q Consensus 214 ~~~~~~~g-~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~ 292 (523)
.++++++| ||+||||+.+.||+|+.+|+|.+||.++++.....+ .++++||||||.|++||++++++|..|+++.
T Consensus 172 ~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s----~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~ 247 (1102)
T PLN02735 172 FEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAAS----ITSQVLVEKSLLGWKEYELEVMRDLADNVVI 247 (1102)
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEecCCCeEEEEEEEEcCCCCEEE
Confidence 99999998 999999999999999999999999999998765322 3578999999999889999999987777766
Q ss_pred Eeeecee--eeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCc-cccEEEEEEe-CCCCEEEEEEecCCCCCccc
Q 009903 293 FGERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPV 368 (523)
Q Consensus 293 ~~~~~~~--~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vE~~~~-~~G~~~liEiNpR~~g~~~~ 368 (523)
+...+.. ...+........|++.++++..+++++++.+++++||+. |++|+||+++ .+|++||||||||+++++.+
T Consensus 248 v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l 327 (1102)
T PLN02735 248 ICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSAL 327 (1102)
T ss_pred EeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCCCCcchh
Confidence 5433211 111223445556876799999999999999999999995 9999999999 57889999999999988999
Q ss_pred eeeecCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccC
Q 009903 369 TEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVP 448 (523)
Q Consensus 369 ~~~~~Gidl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~ 448 (523)
+++++|+|+.+..+++++|.+++..+.++.... ...|.|..+.+... .|.|++-++. .....+.
T Consensus 328 ~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~------------~a~~ep~~d~~~~k-~p~~~f~~f~---~~~~~l~ 391 (1102)
T PLN02735 328 ASKATGFPIAKMAAKLSVGYTLDQIPNDITLKT------------PASFEPSIDYVVTK-IPRFAFEKFP---GSQPILT 391 (1102)
T ss_pred hhhhhCCCHHHHHHHHHCCCChhhhcccccccc------------chheeecCCcEEEE-cccCCccccc---CCCcccc
Confidence 999999999999999999998865432222111 12355665555433 4445554331 1233344
Q ss_pred CCCCcceEEEEEEcCCHHHHHHHHHHHhhc
Q 009903 449 PSYDSLLGKLIVWAPTREKAIERMKRALND 478 (523)
Q Consensus 449 ~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~ 478 (523)
+.+.+ .|.|++.|+|++||++|+.+.++.
T Consensus 392 ~~mks-~ge~m~~gr~~~ea~~ka~~~~~~ 420 (1102)
T PLN02735 392 TQMKS-VGEAMALGRTFQESFQKALRSLET 420 (1102)
T ss_pred eeeee-cceEEEecCCHHHHHHHHHHHhcC
Confidence 45556 999999999999999999998865
No 24
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=368.53 Aligned_cols=384 Identities=15% Similarity=0.148 Sum_probs=285.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCC---ccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA---LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~---~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
|||++||+|++..+..++++++++|+++++++++.+... .....++....+. ..+.+.++++++++++|+
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~l~~~~~~~~~d~ 73 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVII-------NGDIDDLVEFLRKLGPEA 73 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhc-------CCCHHHHHHHHHHcCCCE
Confidence 789999999999999999999999999999986654332 1222233222221 367889999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCC---c
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF---P 223 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~---P 223 (523)
|+++.+. .....+.+.+.+|+++ +++++++..++||..|+++|+++|||+|++ ..+.+.+++.+++++++| |
T Consensus 74 vi~~~e~--~~~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~--~~~~~~~e~~~~~~~~g~~~~P 148 (416)
T PRK07206 74 IIAGAES--GVELADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQ--INTADWEEAEAWLRENGLIDRP 148 (416)
T ss_pred EEECCCc--cHHHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccE--EecCCHHHHHHHHHhcCCCCCC
Confidence 9997653 2234455666778763 789999999999999999999999999999 778999999999999988 9
Q ss_pred EEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHH-hcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeece--ee
Q 009903 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SI 300 (523)
Q Consensus 224 ~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~--~~ 300 (523)
+||||..|+||+||++|++.+|+.++++++...... ......+||||||+| .||+++++.. +|+++....... ..
T Consensus 149 ~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~~~~~-~G~~~~~~~~~~~~~~ 226 (416)
T PRK07206 149 VVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVNFVSL-DGNHLVTEIVRYHKTS 226 (416)
T ss_pred EEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEEEEEE-CCEEEEEEeEEeeecc
Confidence 999999999999999999999999999887532100 011368999999999 9999999975 456554322111 11
Q ss_pred eecCceeeEecC-CCCCCHHHHHHHHHHHHHHHHHcCCc-cccEEEEEEeCCCCEEEEEEecCCCCC--ccceeeecCCC
Q 009903 301 QRRNQKLLEEAP-SPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQVE--HPVTEMISSVD 376 (523)
Q Consensus 301 ~~~~~~~~~~~p-~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vE~~~~~~G~~~liEiNpR~~g~--~~~~~~~~Gid 376 (523)
............ .+ .+.+..+++.+.+.+++++||+. |++|+||+++++| +++||||||++|+ +.+++.++|+|
T Consensus 227 ~~~~~~~~~~~~~~p-~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEin~R~~G~~~~~~~~~~~G~d 304 (416)
T PRK07206 227 LNSGSTVYDYDEFLD-YSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEIGARLDGGLHPDVARLATGDS 304 (416)
T ss_pred cCCCCceecccccCC-ccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEECCccCCCCccchhhhhcCcC
Confidence 111111111111 22 45677889999999999999997 9999999999988 9999999999987 45678899999
Q ss_pred HHHHHHHHHcCCCCCCCc--cccccceeEEEEEEeeCCCCCCCCCCCceEEEE----ecCCCCcE-EEeeeecCCcccCC
Q 009903 377 LIEEQIHVAMGGKLRYKQ--EDIVLQGHSIECRINAEDPFKNFRPGPGRITAY----LPAGGPFV-RMDSHVYPDYVVPP 449 (523)
Q Consensus 377 l~~~~~~~~~G~~~~~~~--~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~----~~~~~~~v-~~~~~~~~G~~v~~ 449 (523)
+++++++.++|.++.... ......+++....+.+ +..|.+..+ .....|++ .+..++..|+.|++
T Consensus 305 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~ 376 (416)
T PRK07206 305 QLDATVESLADPDVFRETLREGYRLKAHVFNVFLIS--------PAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYVPQ 376 (416)
T ss_pred HHHHHHHHHhCchhhccccCCCcChhhceEEEEEec--------CCCceEeCCccHHHHHhCCchhheEEecCCCCCccC
Confidence 999999999998753221 1112233333333322 345666655 12223443 35677788999977
Q ss_pred CCC--cceEEEEEEcCCHHHHHHHHHHHhh
Q 009903 450 SYD--SLLGKLIVWAPTREKAIERMKRALN 477 (523)
Q Consensus 450 ~~~--~~iG~vi~~g~s~~ea~~~~~~~~~ 477 (523)
..| +++|+|++.++|.+++.+..+++.+
T Consensus 377 ~~d~~~~~g~v~~~~~~~~~~~~~~~~~~~ 406 (416)
T PRK07206 377 TVDLFSQPGTVYLVHKDKEQLWQDYEKIRK 406 (416)
T ss_pred ceecCCCCEEEEEEcCCHHHHHHHHHHHHH
Confidence 444 3699999999999998887776554
No 25
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=6.8e-42 Score=391.90 Aligned_cols=376 Identities=22% Similarity=0.308 Sum_probs=301.4
Q ss_pred CccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHH
Q 009903 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (523)
Q Consensus 70 ~~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~ 138 (523)
..|||||+|+|.+ |..++++|+++|++|++++++++.......++|+.+.. +.+.+.+.++
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~--------p~~~~~v~~i 76 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIE--------PLTPEAVEKI 76 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEEC--------CCCHHHHHHH
Confidence 4789999999973 56899999999999999988877767778899998864 2467899999
Q ss_pred HHHcCCCEEEeCCCcccc-----cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHH
Q 009903 139 AISRGCTMLHPGYGFLAE-----NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (523)
Q Consensus 139 ~~~~~id~Vi~~~g~~~e-----~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~ 213 (523)
++++++|+|+|+.|.... ....+..++++|++++|++++++..+.||..++++|+++|+|+|++ ..+.+.+++
T Consensus 77 i~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~ 154 (1050)
T TIGR01369 77 IEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPES--EIAHSVEEA 154 (1050)
T ss_pred HHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCe--eecCCHHHH
Confidence 999999999998654111 1133567899999999999999999999999999999999999999 789999999
Q ss_pred HHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEE
Q 009903 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (523)
Q Consensus 214 ~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~ 293 (523)
.++++++|||+||||..|.||+|+.++++.+|+.+++......+ ...++||||||+|++|+++++++|..|+++.+
T Consensus 155 ~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~ 230 (1050)
T TIGR01369 155 LAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNCITV 230 (1050)
T ss_pred HHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCEEEE
Confidence 99999999999999999999999999999999999987765432 22689999999998899999999988888876
Q ss_pred eeecee--eeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC-CCCEEEEEEecCCCCCcccee
Q 009903 294 GERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTE 370 (523)
Q Consensus 294 ~~~~~~--~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~-~G~~~liEiNpR~~g~~~~~~ 370 (523)
...+.. ...+........|+..++++..+++++.+.+++++||+.|.+++||++++ +|++||+|||||++++..+++
T Consensus 231 ~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s 310 (1050)
T TIGR01369 231 CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSRSSALAS 310 (1050)
T ss_pred eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCcchhhhh
Confidence 443221 11123344556787668999999999999999999999999999999995 478999999999998888889
Q ss_pred eecCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCc--ccC
Q 009903 371 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDY--VVP 448 (523)
Q Consensus 371 ~~~Gidl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~--~v~ 448 (523)
.++|+|+.+..+++++|.++....-++. + +++ ..|.|..+.+... .|.++ ++++.+. ++.
T Consensus 311 ~atG~pl~~~~~~~alG~~l~~~~n~i~--g---------~~~-~~~~p~~~~~~~k-~p~~~-----~~~~~~~~~~~~ 372 (1050)
T TIGR01369 311 KATGYPIAKVAAKLAVGYGLDELKNPVT--G---------TTP-ASFEPSLDYVVVK-IPRWD-----FDKFAGVDRKLG 372 (1050)
T ss_pred HHhCCCHHHHHHHHHcCCCchhhcCCCc--C---------cCc-cccCcCCCeEEEE-EEeCC-----CCCCCcccCCcC
Confidence 9999999999999999998754332111 1 111 2345665664322 23233 3334322 222
Q ss_pred CCCCcceEEEEEEcCCHHHHHHHHHHHhhc
Q 009903 449 PSYDSLLGKLIVWAPTREKAIERMKRALND 478 (523)
Q Consensus 449 ~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~ 478 (523)
+.+.+ +|+|+++|+|++||++++.++++.
T Consensus 373 ~~~k~-~G~v~~~g~~~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 373 TQMKS-VGEVMAIGRTFEEALQKALRSLEI 401 (1050)
T ss_pred cccce-eeEEEEECCCHHHHHHHHHHHhcc
Confidence 22233 999999999999999999999986
No 26
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.2e-41 Score=385.11 Aligned_cols=380 Identities=17% Similarity=0.194 Sum_probs=296.9
Q ss_pred CccEEEEEcCcH--HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHc-CCCE
Q 009903 70 RQEKILVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTM 146 (523)
Q Consensus 70 ~~k~ILi~g~g~--~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~-~id~ 146 (523)
+.|+|++++++. ++..++++++++||+++++++++.........++..+.. ++.|.+.+++.+++. .+++
T Consensus 1 ~~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~-------d~~d~~~l~~~~~~~~~i~~ 73 (887)
T PRK02186 1 MTGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISA-------DTSDPDRIHRFVSSLDGVAG 73 (887)
T ss_pred CccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEc-------CCCCHHHHHHHHHhcCCCCE
Confidence 357899999764 567899999999999999975543322222235555554 478899999999886 6899
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEE
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI 226 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~Vv 226 (523)
|+++.++ .....+++++.+|++ |++++++..++||..|+++|+++|||+|++ ..+.+.+++.++.++++||+||
T Consensus 74 V~~~se~--~v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~--~~v~~~~e~~~~~~~~~~PvVV 147 (887)
T PRK02186 74 IMSSSEY--FIEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRT--HALALRAVALDALDGLTYPVVV 147 (887)
T ss_pred EEeCchh--hHHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHHHhCCCCEEE
Confidence 9987643 234566788889986 789999999999999999999999999999 7889999999999999999999
Q ss_pred EeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeecee--eeecC
Q 009903 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS--IQRRN 304 (523)
Q Consensus 227 KP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~--~~~~~ 304 (523)
||..|+||+||++|+|.+|+.++++.+... ....+||||||+| .||+++++.+.. .+..++..+.. .....
T Consensus 148 KP~~g~gS~GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g-~~~i~~i~~k~~~~~~~~ 220 (887)
T PRK02186 148 KPRMGSGSVGVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVAR-GHQVLGITRKHLGPPPHF 220 (887)
T ss_pred EeCCCCCCCCeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECC-cEEEEEEEeeecCCCCCe
Confidence 999999999999999999999999876532 2578999999999 999999998743 33333222211 11111
Q ss_pred ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCc-cccEEEEEEeCCCCEEEEEEecCCCCCc--cceeeecCCCHHHHH
Q 009903 305 QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQVEH--PVTEMISSVDLIEEQ 381 (523)
Q Consensus 305 ~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vE~~~~~~G~~~liEiNpR~~g~~--~~~~~~~Gidl~~~~ 381 (523)
.......|++ ++++..+++.+++.+++++||+. |++|+||+++++| ++|||||||++|+. .+++.++|+|+++++
T Consensus 221 ve~g~~~P~~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~ 298 (887)
T PRK02186 221 VEIGHDFPAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAGGMIPVLLEEAFGVDLLDHV 298 (887)
T ss_pred EEeccccCCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCCccHHHHHHHHHCcCHHHHH
Confidence 2233345665 88999999999999999999997 9999999999877 99999999999873 578888999999999
Q ss_pred HHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEec-----CCCCcEEEeeeecCCcccCCCC--Ccc
Q 009903 382 IHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLP-----AGGPFVRMDSHVYPDYVVPPSY--DSL 454 (523)
Q Consensus 382 ~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~-----~~~~~v~~~~~~~~G~~v~~~~--~~~ 454 (523)
++.++|.++.... ...+++....+++ +..|.+..+.. ...+.+.+...+.+|+.+++.. .++
T Consensus 299 i~~~lG~~~~~~~---~~~~~~ai~~~~~--------~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 367 (887)
T PRK02186 299 IDLHLGVAAFADP---TAKRYGAIRFVLP--------ARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDR 367 (887)
T ss_pred HHHhCCCCCCCCC---CCCCeEEEEEEec--------CCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCc
Confidence 9999999875433 2234443333332 23567766621 2234555666678899986642 347
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhcCeEe
Q 009903 455 LGKLIVWAPTREKAIERMKRALNDTIIT 482 (523)
Q Consensus 455 iG~vi~~g~s~~ea~~~~~~~~~~i~i~ 482 (523)
+|+|++.|+|.+++.++++++.+.++|.
T Consensus 368 ~g~vi~~g~~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 368 IAAVVCAGDHRDSVAAAAERAVAGLSID 395 (887)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHhcCEEE
Confidence 9999999999999999999999999874
No 27
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=2.1e-41 Score=347.21 Aligned_cols=351 Identities=20% Similarity=0.299 Sum_probs=277.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g 152 (523)
+|+|+|+|..+..++++|+++|++|++++ .++.++...++|+.+.. ++.|.+.+.++++. +|.|....+
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d--~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e 69 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLD--PDANSPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFE 69 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEC--CCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcC
Confidence 48999999999999999999999999994 45556778899998853 37888999999875 687754332
Q ss_pred cccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCC
Q 009903 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (523)
Q Consensus 153 ~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~ 232 (523)
. -.....+.+++.|+++ +|+++++..++||..++++|+++|||+|++ ..+.+.+++.++++++|||+|+||..++
T Consensus 70 ~--i~~~~l~~l~~~g~~~-~p~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~~g 144 (352)
T TIGR01161 70 H--VDVEALEKLEARGVKL-FPSPDALAIIQDRLTQKQFLQKLGLPVPPF--LVIKDEEELDAALQELGFPVVLKARTGG 144 (352)
T ss_pred c--CCHHHHHHHHhCCCeE-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCc--cEeCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2 1234567788888774 599999999999999999999999999999 7899999999999999999999999986
Q ss_pred -CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEec
Q 009903 233 -GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 311 (523)
Q Consensus 233 -gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~~ 311 (523)
+|+|++++++.+|+.++++.+ ....+|+||||++.+|+++.++.+.+|++..+...+. ....+.......
T Consensus 145 ~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~~~~~-~~~~g~~~~~~~ 215 (352)
T TIGR01161 145 YDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAFYPVVEN-IHQDGILRYVVA 215 (352)
T ss_pred CCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEECCccc-EEeCCEEEEEEC
Confidence 899999999999999888764 2358999999996599999999877788776644332 222333333456
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCCCC
Q 009903 312 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (523)
Q Consensus 312 p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~~~ 391 (523)
|+. ++++..+++.+++.+++++||+.|++|+||+++++|++||+|||||++++..++..++++|++++++++++|.+++
T Consensus 216 p~~-~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l~ 294 (352)
T TIGR01161 216 PAA-VPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPLG 294 (352)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCCC
Confidence 764 8888899999999999999999999999999998899999999999998877788889999999999999999876
Q ss_pred CCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCC
Q 009903 392 YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPT 464 (523)
Q Consensus 392 ~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s 464 (523)
.. .....++++.+.+.. .. ....+..+ ...|++. +++|.....++ ++++|||.+.|+|
T Consensus 295 ~~----~~~~~~~m~n~~~~~--~~---~~~~~~~~--~~~~~~~--~~~y~k~~~~~--~rk~Ghi~~~~~~ 352 (352)
T TIGR01161 295 ST----ELLLPSVMVNLLGTE--DD---VIPLWEEI--LALPGAK--LHWYGKAEVRP--GRKVGHVNLVGSD 352 (352)
T ss_pred Cc----cccCCEEEEEEecCc--cc---hHHHHHHH--HhCCCCE--EEECCCCCCCC--CCcceEEEeecCC
Confidence 53 234457888887652 00 00011111 1123333 56775444444 5789999999875
No 28
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=2.6e-41 Score=385.51 Aligned_cols=308 Identities=19% Similarity=0.265 Sum_probs=262.0
Q ss_pred CccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHH
Q 009903 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (523)
Q Consensus 70 ~~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~ 138 (523)
.+|+|||+|+|.. +.+++++|+++|+++++++++++..+.+..++|+.+.. +.+.+.++++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~--------pl~~e~vl~i 644 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNV 644 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEE--------eCCHHHHHHH
Confidence 4689999999974 35699999999999999999999888889999999975 5779999999
Q ss_pred HHHcCCCEEEeCCCcccccH---HHHHHHHH---------cCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCcc
Q 009903 139 AISRGCTMLHPGYGFLAENA---VFVEMCRE---------HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL 206 (523)
Q Consensus 139 ~~~~~id~Vi~~~g~~~e~~---~~a~~~~~---------~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~ 206 (523)
++++++|+|+|.+|...... .+.+.+.+ .|+.++|++++++..+.||..++++|+++|||+|++ ..
T Consensus 645 ~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~--~~ 722 (1102)
T PLN02735 645 IDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKG--GI 722 (1102)
T ss_pred HHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCe--eE
Confidence 99999999999876422211 11122222 379999999999999999999999999999999999 77
Q ss_pred CCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeC
Q 009903 207 LQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK 286 (523)
Q Consensus 207 ~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~ 286 (523)
+.+.+++.++++++|||+||||..++||+|+.++++.+||.++++.+.... ++++++||+||++++|+++++++|+
T Consensus 723 v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~----~~~~vlVEefI~~g~Ei~V~vl~D~ 798 (1102)
T PLN02735 723 ARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVD----PERPVLVDKYLSDATEIDVDALADS 798 (1102)
T ss_pred eCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhc----CCCCEEEEEecCCcEEEEEEEEECC
Confidence 899999999999999999999999999999999999999999999876542 3468999999985599999999998
Q ss_pred CCcEEEEeeeceee--eecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCC
Q 009903 287 YGNVVHFGERDCSI--QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQV 364 (523)
Q Consensus 287 ~g~v~~~~~~~~~~--~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g 364 (523)
+|+++.....+... ..+........|++.++++..+++.+++.+++++||+.|++++||+++++|++||+|||||+++
T Consensus 799 ~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s~ 878 (1102)
T PLN02735 799 EGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASR 878 (1102)
T ss_pred CCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCCCCc
Confidence 88877654433211 1111222334576669999999999999999999999999999999987788999999999998
Q ss_pred CccceeeecCCCHHHHHHHHHcCCCCC
Q 009903 365 EHPVTEMISSVDLIEEQIHVAMGGKLR 391 (523)
Q Consensus 365 ~~~~~~~~~Gidl~~~~~~~~~G~~~~ 391 (523)
+++++++++|+|+.+.++++++|+++.
T Consensus 879 t~p~~~katGidl~~~~~~~~~G~~l~ 905 (1102)
T PLN02735 879 TVPFVSKAIGHPLAKYASLVMSGKSLK 905 (1102)
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCChh
Confidence 899999999999999999999999864
No 29
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.3e-40 Score=381.40 Aligned_cols=376 Identities=20% Similarity=0.298 Sum_probs=295.4
Q ss_pred CCccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHH
Q 009903 69 CRQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLS 137 (523)
Q Consensus 69 ~~~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~ 137 (523)
...|||||+|+|.+ |.+++++|+++|++|+++++++........++|..+. + +.+.+.+.+
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~-e-------p~~~e~l~~ 76 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYF-E-------PLTVEFVKR 76 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEE-C-------CCCHHHHHH
Confidence 35789999999975 6789999999999999998776555555567887764 2 457899999
Q ss_pred HHHHcCCCEEEeCCCcccc-cH--HH--HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHH
Q 009903 138 AAISRGCTMLHPGYGFLAE-NA--VF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE 212 (523)
Q Consensus 138 ~~~~~~id~Vi~~~g~~~e-~~--~~--a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e 212 (523)
+++++++|+|+|+.|.... +. .+ ...++++|++++|++++++..+.||..++++|+++|+|+|++ ..+.+.++
T Consensus 77 ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~--~~v~s~ee 154 (1068)
T PRK12815 77 IIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPES--EIVTSVEE 154 (1068)
T ss_pred HHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCc--eeeCCHHH
Confidence 9999999999997643211 11 11 125788999999999999999999999999999999999999 78999999
Q ss_pred HHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEE
Q 009903 213 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (523)
Q Consensus 213 ~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~ 292 (523)
+.++++++|||+||||..+.||+|+.++++.+||.++++.....+ ...++|||+||+|++|+++++++|.+|+++.
T Consensus 155 ~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~ 230 (1068)
T PRK12815 155 ALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNGNCIT 230 (1068)
T ss_pred HHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCCCEEE
Confidence 999999999999999999999999999999999999997765432 2358999999999889999999998888887
Q ss_pred Eeeecee--eeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCC-CCEEEEEEecCCCCCccce
Q 009903 293 FGERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHPVT 369 (523)
Q Consensus 293 ~~~~~~~--~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~-G~~~liEiNpR~~g~~~~~ 369 (523)
+...+.. ............|+..++++..+++.+++.+++++||+.|.+++||+++++ |+++++|||||++++..++
T Consensus 231 ~~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~ 310 (1068)
T PRK12815 231 VCNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRSSALA 310 (1068)
T ss_pred EEeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccchhhh
Confidence 7543321 111122244456776689999999999999999999999999999999964 7899999999999988888
Q ss_pred eeecCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCC
Q 009903 370 EMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPP 449 (523)
Q Consensus 370 ~~~~Gidl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~ 449 (523)
..++|+++.+..+++++|.+++....++. |... ..|.|.-+.+ .+..|.++ ++++.+.....
T Consensus 311 ~~atG~pl~~~~~~~alG~~l~ei~~~i~--g~~~----------a~~ep~~d~~-~~k~p~~~-----f~~y~~~~~~~ 372 (1068)
T PRK12815 311 SKATGYPIAKIAAKLAVGYTLNELKNPVT--GLTY----------ASFEPALDYV-VVKFPRWP-----FDKFGYADRTL 372 (1068)
T ss_pred hHhhCCcHHHHHHHHHcCCChHHhcCCcc--CCcc----------cccCCccceE-EEEeccCc-----cccccCccccc
Confidence 88999999999999999998654332222 2110 1233443443 22234333 45554433222
Q ss_pred CCCcce---EEEEEEcCCHHHHHHHHHHHhhc
Q 009903 450 SYDSLL---GKLIVWAPTREKAIERMKRALND 478 (523)
Q Consensus 450 ~~~~~i---G~vi~~g~s~~ea~~~~~~~~~~ 478 (523)
.+.+ |+|++.|+|.++|.+|+.++++.
T Consensus 373 --g~kmks~G~v~~ig~~~eea~~ka~~~~~~ 402 (1068)
T PRK12815 373 --GTQMKATGEVMAIGRNFESAFQKALRSLEI 402 (1068)
T ss_pred --cceecccceEEEecCCHHHHHHHHHHhhcC
Confidence 2335 99999999999999999999965
No 30
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=2.7e-40 Score=346.81 Aligned_cols=395 Identities=20% Similarity=0.186 Sum_probs=273.8
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc-CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+||||+|+|.....+++++++. |+.++++.+. ... ....++.+.+ ++.+.+.+++++++.++|+|+++
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~--n~g--~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~ 69 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPG--NAG--TALLAENVVI-------DVTDIEALVAFAKEEGIDLTVVG 69 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCC--CHH--HHhhccccCC-------CCCCHHHHHHHHHHhCCCEEEEC
Confidence 4899999998888999999996 5566666322 111 2221222223 46889999999999999999987
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~ 230 (523)
.+... ...+++.++++|++++|++++++.+++||..+|++|+++|||+|++ ..+.+.+++.+++++++||+||||..
T Consensus 70 ~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~P~VvKP~~ 146 (420)
T PRK00885 70 PEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAY--ETFTDAEEALAYLDEKGAPIVVKADG 146 (420)
T ss_pred CchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 54211 1355678889999999999999999999999999999999999998 78899999999999999999999999
Q ss_pred CCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeecee--e-----eec
Q 009903 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS--I-----QRR 303 (523)
Q Consensus 231 g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~--~-----~~~ 303 (523)
++||+||+++++.+|+.++++.+............+||||||+| +|++++++.+++ .+..+...+.. . ..+
T Consensus 147 ~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 224 (420)
T PRK00885 147 LAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFVDGE-NVLPLPTAQDHKRAGDGDTGPN 224 (420)
T ss_pred CCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEECCC-ceEeceeeEeeeecccCCCCCC
Confidence 99999999999999999999887542110001358999999999 999999999754 55554332211 0 011
Q ss_pred CceeeEecCCCCCCHHHHHHHHH-HHHHH---HHHcCC--ccccEEEEEEeCCCCEEEEEEecCCCCC-ccceeeecCCC
Q 009903 304 NQKLLEEAPSPALTPELRKAMGD-AAVAA---AASIGY--IGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISSVD 376 (523)
Q Consensus 304 ~~~~~~~~p~~~l~~~~~~~l~~-~a~~~---~~alg~--~G~~~vE~~~~~~G~~~liEiNpR~~g~-~~~~~~~~Gid 376 (523)
......++|++.++++..+++.+ ++.++ ++++|+ .|++|+||+++++| ++|+|+|||+|+. .......++.|
T Consensus 225 ~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~d 303 (420)
T PRK00885 225 TGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG-PKVIEFNARFGDPETQVVLPRLKSD 303 (420)
T ss_pred CCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC-cEEEEEecccCCccHHhhhhhccCC
Confidence 12233456766578777766654 55554 445554 59999999999888 9999999999765 32333446779
Q ss_pred HHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCce-EEEEecCCCCcEEEeeeec-CCcccCCCCCcc
Q 009903 377 LIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGR-ITAYLPAGGPFVRMDSHVY-PDYVVPPSYDSL 454 (523)
Q Consensus 377 l~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~-v~~~~~~~~~~v~~~~~~~-~G~~v~~~~~~~ 454 (523)
+.+.+++++.|...+... . ..++.++.+.+.+..+ . ..+..|. +..+.......+.. .... .+..+... .++
T Consensus 304 ~~~~~~~~~~g~~~~~~~-~-~~~~~a~~~~~~~~gy-~-~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~-g~R 377 (420)
T PRK00885 304 LVELLLAAADGKLDEVEL-E-WDDRAAVGVVLAAKGY-P-GDYRKGDVITGLEAADADKVFH-AGTKLEDGKLVTN-GGR 377 (420)
T ss_pred HHHHHHHHHcCCCCCCCc-e-ECCCcEEEEEEeCCCC-C-CCCCCCCEeecccccCCCEEEE-CceeccCCeEEEe-CCE
Confidence 999999999997654321 1 1133444333322111 0 0111122 22221111001111 0111 11112122 245
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhcCeEeecccCHH
Q 009903 455 LGKLIVWAPTREKAIERMKRALNDTIITGVPTTIE 489 (523)
Q Consensus 455 iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~~~~ 489 (523)
+|+|+++|+|.+||.++++++++.|++.+.++..+
T Consensus 378 ~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~~~r~d 412 (420)
T PRK00885 378 VLCVTALGDTLEEAQKRAYAALDKIDFDGGFYRRD 412 (420)
T ss_pred EEEEEEecCCHHHHHHHHHHHHhccCCCCCEeech
Confidence 99999999999999999999999999998776443
No 31
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.5e-40 Score=380.48 Aligned_cols=397 Identities=21% Similarity=0.292 Sum_probs=304.4
Q ss_pred CCccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHH
Q 009903 69 CRQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLS 137 (523)
Q Consensus 69 ~~~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~ 137 (523)
..++||||+|+|.+ |..++++|+++|++|+++++++........++|+.+.. ..+.+.+.+
T Consensus 5 ~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~--------p~~~e~l~~ 76 (1066)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIE--------PITPEFVEK 76 (1066)
T ss_pred CCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEEC--------CCCHHHHHH
Confidence 34789999999985 46799999999999999987766555667789988754 346789999
Q ss_pred HHHHcCCCEEEeCCCcccc-c--HHH--HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHH
Q 009903 138 AAISRGCTMLHPGYGFLAE-N--AVF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE 212 (523)
Q Consensus 138 ~~~~~~id~Vi~~~g~~~e-~--~~~--a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e 212 (523)
+++++++|+|+|+.+.... + ..+ ...++++|++++|++++++..+.||..++++|+++|+|+|++ ..+.+.++
T Consensus 77 ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~--~~v~s~~e 154 (1066)
T PRK05294 77 IIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRS--GIAHSMEE 154 (1066)
T ss_pred HHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCe--eeeCCHHH
Confidence 9999999999998653211 1 111 235788999999999999999999999999999999999999 78999999
Q ss_pred HHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEE
Q 009903 213 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (523)
Q Consensus 213 ~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~ 292 (523)
+.++++++|||+||||..|.||+|++++++.+||.+++++....+ ...++|||+||+|++|+++++++|++|+++.
T Consensus 155 ~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~ 230 (1066)
T PRK05294 155 ALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PVTEVLIEESLLGWKEYEYEVMRDKNDNCII 230 (1066)
T ss_pred HHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCeEEEEEcccCceEEEEEEEEcCCCCEEE
Confidence 999999999999999999999999999999999999988654322 2368999999999889999999998888887
Q ss_pred Eeeecee--eeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCc-cccEEEEEEe-CCCCEEEEEEecCCCCCccc
Q 009903 293 FGERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPV 368 (523)
Q Consensus 293 ~~~~~~~--~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vE~~~~-~~G~~~liEiNpR~~g~~~~ 368 (523)
+...+.. ...+........|+..++++..+++.+++.+++++||+. |++++||+++ .+|++||+|||||++++..+
T Consensus 231 ~~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~ 310 (1066)
T PRK05294 231 VCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSSAL 310 (1066)
T ss_pred EeeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCCcceee
Confidence 7543321 011222334456775589999999999999999999999 9999999999 57889999999999988888
Q ss_pred eeeecCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccC
Q 009903 369 TEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVP 448 (523)
Q Consensus 369 ~~~~~Gidl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~ 448 (523)
+..++|+|+.+..++.++|.++....- ...|.. ...|.|....+.. ..|.++ ++++.+...+
T Consensus 311 ~s~~tG~pl~~~~~~~~lG~~l~~m~n--~~~g~~----------~~~~~p~~~~v~~-k~p~~~-----~~~y~k~~~~ 372 (1066)
T PRK05294 311 ASKATGYPIAKVAAKLAVGYTLDEIKN--DITGKT----------PASFEPSLDYVVT-KIPRFA-----FEKFPGADRR 372 (1066)
T ss_pred eeHhhCCCHHHHHHHHHcCCChHHhcC--cccCCC----------cccccccCCeEEE-EccCCc-----cccccCCCCC
Confidence 888999999999999999997743221 111110 0112233233211 223322 4555543333
Q ss_pred CC-CCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeeccc------CHHHHHHhcCCc
Q 009903 449 PS-YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPT------TIEYHKLILDVE 498 (523)
Q Consensus 449 ~~-~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~------~~~~~~~~~~~~ 498 (523)
++ .=+.+|+|++.|+|.++|.+++.+.++. ...|+.. +.+.+...|.||
T Consensus 373 ~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (1066)
T PRK05294 373 LGTQMKSVGEVMAIGRTFEESLQKALRSLEI-GVTGLDEDLFEEESLEELREELKEP 428 (1066)
T ss_pred ccceecccceEEEEcCCHHHHHHHHHHhcCC-CCCCCCccccccCCHHHHHhhcCCC
Confidence 32 1145999999999999999999999864 3333332 234455556663
No 32
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.5e-39 Score=338.93 Aligned_cols=395 Identities=16% Similarity=0.158 Sum_probs=277.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+|||||+|+|.....++.++++.++...++....+........+ ....+ +..|.+.++++++++++|+|+++
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~-~~~~~-------~~~d~~~l~~~a~~~~iD~Vv~g 75 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELL-PADSF-------SILDKSSVQSFLKSNPFDLIVVG 75 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccc-cccCc-------CcCCHHHHHHHHHHcCCCEEEEC
Confidence 47999999999999999999999965544432222211111000 00112 47899999999999999999986
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~ 230 (523)
.+.. -...+++.++++|++++||+..+++++.||..+|++|+++|||+|++ ..+.+.+++.+++++++||+||||..
T Consensus 76 ~E~~-l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~--~~~~~~~ea~~~~~~~~~PvVVKp~~ 152 (426)
T PRK13789 76 PEDP-LVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASY--KTFTEYSSSLSYLESEMLPIVIKADG 152 (426)
T ss_pred CchH-HHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCe--EeeCCHHHHHHHHHhcCCCEEEEeCC
Confidence 6311 01356788899999999999999999999999999999999999998 78899999999999999999999999
Q ss_pred CCCCCceEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeee-cee-ee-----
Q 009903 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DCS-IQ----- 301 (523)
Q Consensus 231 g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~-~~~-~~----- 301 (523)
+++|+||+++++.+|+.++++.+.... .++ +..+||||||+| +|+++.++.++. .+..+... +.. ..
T Consensus 153 ~~~gkGV~vv~~~eel~~a~~~~~~~~--~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~-~~~~lp~~~d~k~~~d~d~g 228 (426)
T PRK13789 153 LAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLLPAAQDHKRAFDGDQG 228 (426)
T ss_pred CCCCCcEEEECCHHHHHHHHHHHHhhc--cccCCCCeEEEEECcCC-eEEEEEEEECCC-EEEEccceEecccccCCCCC
Confidence 999999999999999999999876432 222 348999999999 999999998754 44444321 111 10
Q ss_pred ecCceeeEecCCCCCCHHHHHHHHH-HHHHHH---HHcC--CccccEEEEEEeCCCCEEEEEEecCCCCC-ccceeeecC
Q 009903 302 RRNQKLLEEAPSPALTPELRKAMGD-AAVAAA---ASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISS 374 (523)
Q Consensus 302 ~~~~~~~~~~p~~~l~~~~~~~l~~-~a~~~~---~alg--~~G~~~vE~~~~~~G~~~liEiNpR~~g~-~~~~~~~~G 374 (523)
.+......++|++.++++..+++.+ ++.+++ +++| +.|++++||+++++|++||+|+|+|+|.. ...+....+
T Consensus 229 ~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~ 308 (426)
T PRK13789 229 PNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLD 308 (426)
T ss_pred CCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCC
Confidence 1122345677887678888888764 444444 5556 67999999999998899999999999643 222223356
Q ss_pred CCHHHHHHHHHcCCCCCCCcccccc-ceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEE-e--eeecCCcccCCC
Q 009903 375 VDLIEEQIHVAMGGKLRYKQEDIVL-QGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRM-D--SHVYPDYVVPPS 450 (523)
Q Consensus 375 idl~~~~~~~~~G~~~~~~~~~~~~-~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~-~--~~~~~G~~v~~~ 450 (523)
.|+++.+++++.|+-.... ..+ .++++.+.+.+..+ ... +..|....+.....+++.+ . +....|..+ .+
T Consensus 309 ~dl~~~~~~~~~g~l~~~~---~~~~~~~s~~vv~a~~gy-p~~-~~~g~~i~~~~~~~~~~~if~a~~~~~~~~~~-t~ 382 (426)
T PRK13789 309 GDLLELLYAASTGKIKVVN---LKLKQGAAAVVVLAAQGY-PDS-YEKNIPLNLPETSGQNVVLFHAGTKKKDGKVF-SS 382 (426)
T ss_pred CCHHHHHHHHHcCCCCCCC---ceecCCceEEEEECcCCc-CCC-cCCCCEEeccCcCCCCcEEEEeeeeeeCCEEE-eC
Confidence 8999999999999632221 122 33444444433211 111 1123322232111133332 1 111223322 33
Q ss_pred CCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeecccC
Q 009903 451 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTT 487 (523)
Q Consensus 451 ~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~~ 487 (523)
..|+..|+++|+|.++|+++++++++.|.+.|.++.
T Consensus 383 -ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R 418 (426)
T PRK13789 383 -GGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKTFYR 418 (426)
T ss_pred -CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEEe
Confidence 334778889999999999999999999999987664
No 33
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=1.3e-39 Score=342.30 Aligned_cols=393 Identities=18% Similarity=0.203 Sum_probs=273.4
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
+||||+|+|..+..+++++++.|+.+.++....+ ........+..+.+ ++.|.+.+++++++.++|+|+++.
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~~ 72 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGN-AGTARLAKNKNVAI-------SITDIEALVEFAKKKKIDLAVIGP 72 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccEEEEECCC-HHHhhhcccccccC-------CCCCHHHHHHHHHHhCCCEEEECC
Confidence 5899999999999999999999976655532222 22111111222322 478899999999999999999875
Q ss_pred CcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCc-EEEEeCC
Q 009903 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATA 230 (523)
Q Consensus 152 g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P-~VvKP~~ 230 (523)
+.. -...+++.++++|++++|+++++++.++||..++++|+++|||+|++ ..+.+.+++.+++++++|| +|+||..
T Consensus 73 e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~--~~~~~~~~~~~~~~~~g~P~~VvKp~~ 149 (423)
T TIGR00877 73 EAP-LVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEY--EVFTDPEEALSYIQEKGAPAIVVKADG 149 (423)
T ss_pred chH-HHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCe--EEECCHHHHHHHHHhcCCCeEEEEECC
Confidence 421 01356788999999999999999999999999999999999999999 7899999999999999999 9999999
Q ss_pred CCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeecee--e-----eec
Q 009903 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS--I-----QRR 303 (523)
Q Consensus 231 g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~--~-----~~~ 303 (523)
++||+||+++++.+|+.++++++...... .....+|+||||+| .|++++++.++. .+..+...+.. . ...
T Consensus 150 ~~gg~Gv~~v~~~~el~~~~~~~~~~~~g-~~~~~~lvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~~~~~~~~~~~~ 226 (423)
T TIGR00877 150 LAAGKGVIVAKTNEEAIKAVEEILEQKFG-DAGERVVIEEFLDG-EEVSLLAFVDGK-TVIPMPPAQDHKRALEGDKGPN 226 (423)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHhcC-CCCCeEEEEECccC-ceEEEEEEEcCC-eEEeceeeeeeeecccCCCCCC
Confidence 99999999999999999999887654210 01357999999999 999999998854 55544332211 0 000
Q ss_pred CceeeEecCCCCCCHHHHHH----HHHHHHHHHHHcC--CccccEEEEEEeCCCCEEEEEEecCCCCCcc-ceeeecCCC
Q 009903 304 NQKLLEEAPSPALTPELRKA----MGDAAVAAAASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVEHP-VTEMISSVD 376 (523)
Q Consensus 304 ~~~~~~~~p~~~l~~~~~~~----l~~~a~~~~~alg--~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~-~~~~~~Gid 376 (523)
......++|.+.++++..++ +.+.+.+.+.++| +.|++|+||+++++| +|++|||||+|++.. .....+++|
T Consensus 227 ~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~d 305 (423)
T TIGR00877 227 TGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLLKSD 305 (423)
T ss_pred CCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC-cEEEEEEccCCCccceeEecccCCC
Confidence 11223345665566665544 3333445555555 569999999999988 999999999976522 233346799
Q ss_pred HHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEE---ecCCCCcEEE-eeeec-CCcccCCCC
Q 009903 377 LIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAY---LPAGGPFVRM-DSHVY-PDYVVPPSY 451 (523)
Q Consensus 377 l~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~---~~~~~~~v~~-~~~~~-~G~~v~~~~ 451 (523)
+.+.+++++.|...++.. . .....++.+.+.+.. +....+....+ .....+++.+ ..... ....+..+
T Consensus 306 l~~~~~~~~~g~l~~~~~-~-~~~~~a~~~~~~~~~----yp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 378 (423)
T TIGR00877 306 LLEVCLAAVEGKLDEVEL-R-FDNRAAVTVVLASEG----YPGDYRKGDPITGEPLIEAEGVKVFHAGTKQDNGKLVTS- 378 (423)
T ss_pred HHHHHHHHHcCCCCCCCc-e-ECCCceEEEEEecCC----cCCCCCCCCEeeCCcccccCCCEEEECceeccCCEEEEc-
Confidence 999999999996322211 1 123334443343221 11122222222 1111133322 11111 01111122
Q ss_pred CcceEEEEEEcCCHHHHHHHHHHHhhcCeEeeccc
Q 009903 452 DSLLGKLIVWAPTREKAIERMKRALNDTIITGVPT 486 (523)
Q Consensus 452 ~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~ 486 (523)
.+++|+|++.|+|.++|.++++++++.|+++|.++
T Consensus 379 ~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~~~~ 413 (423)
T TIGR00877 379 GGRVLAVTALGKSLEEARERAYEAVEYIKFEGMFY 413 (423)
T ss_pred CCEEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEE
Confidence 34599999999999999999999999999998766
No 34
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.6e-39 Score=339.60 Aligned_cols=391 Identities=15% Similarity=0.110 Sum_probs=274.5
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+|||||+|+|.....++.++++.|++++++..+ .+.....+++.++.+ +..|.+.++++|+++++|+|++
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~--~Npg~~~~a~~~~~~-------~~~d~e~l~~~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGH--ENPSIKKLSKKYLFY-------DEKDYDLIEDFALKNNVDIVFV 71 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CChhhhhcccceeec-------CCCCHHHHHHHHHHhCCCEEEE
Confidence 6889999999999999999999999988887322 122224455554444 3678999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
+.+... ...+++.+++.|++++||+.+++++++||..||++|+++|||+|+++ ..+.+.+++.++..+++||+||||.
T Consensus 72 ~~d~~l-~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~-~~~~~~~e~~~~~~~~~~PvVVKP~ 149 (435)
T PRK06395 72 GPDPVL-ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF-NACFSEKDAARDYITSMKDVAVKPI 149 (435)
T ss_pred CCChHH-HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc-ceeCChHHHHHHHHhhCCCEEEEeC
Confidence 865321 13556677888999999999999999999999999999999998653 4566778888888888999999999
Q ss_pred CCCCCCceEEeCCH-HHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeec-e--ee----e
Q 009903 230 AGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-C--SI----Q 301 (523)
Q Consensus 230 ~g~gs~Gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~-~--~~----~ 301 (523)
.++||+||.++.+. +++.+++..+.... . ..+.+||||||+| .||+++++.|++ .+..++..+ . .. .
T Consensus 150 ~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~G-~E~Svd~~~dg~-~~~~l~~~~d~~r~~~~d~g 224 (435)
T PRK06395 150 GLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFMPIVQDYKRAYEGDHG 224 (435)
T ss_pred CCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecCC-ceEEEEEEEcCC-eEEEecccceeeecccCCCC
Confidence 99999999999643 33444444433221 0 1367999999999 899999999865 454443321 1 10 1
Q ss_pred ecCceeeEec----CCCCCCHHHHHHHHHHHHHHHHHcC-----CccccEEEEEEeCCCCEEEEEEecCCCCC-ccceee
Q 009903 302 RRNQKLLEEA----PSPALTPELRKAMGDAAVAAAASIG-----YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEM 371 (523)
Q Consensus 302 ~~~~~~~~~~----p~~~l~~~~~~~l~~~a~~~~~alg-----~~G~~~vE~~~~~~G~~~liEiNpR~~g~-~~~~~~ 371 (523)
.+....+.++ |.+.++++..+++.+++.+++++|+ ++|++++||+++++| ||+||+|+|+|.. ...+..
T Consensus 225 p~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~ 303 (435)
T PRK06395 225 PNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVLY 303 (435)
T ss_pred CccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhh
Confidence 1111222233 3445899999999999999999999 457778999999888 9999999999754 223334
Q ss_pred ecCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCC---cccC
Q 009903 372 ISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPD---YVVP 448 (523)
Q Consensus 372 ~~Gidl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G---~~v~ 448 (523)
....|+++.++..+.| ++.. ...... ..++.+.+.+..+-. .+..|.|........+++.+ .+...+ +.+.
T Consensus 304 ~l~~d~~~~~~~~~~g-~l~~-~~~~~~-~~~~~~~l~~~gYp~--~~~~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~ 377 (435)
T PRK06395 304 LLKSDFVETLHQIYSG-NLNG-SIKFER-KATVLKYIVPPGYGE--NPSPGRIKIDKTIFDSNSDV-YYASVSGTLNDVK 377 (435)
T ss_pred hcccCHHHHHHHHhcC-CCCC-CceecC-CCEEEEEEecCCCCC--CCCCCceeccccccCCCCEE-EEeeccccCCCeE
Confidence 4689999999999999 3432 222222 234444444443321 22334443221111123222 111111 1122
Q ss_pred CCCCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeecc
Q 009903 449 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 485 (523)
Q Consensus 449 ~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~ 485 (523)
.+ .+|+++|++.|+|.++|+++++++++.|+ .+..
T Consensus 378 s~-ggRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~~~ 412 (435)
T PRK06395 378 TS-GSRSLAIIAKGDSIPEASEKVDSDLNAVH-GSYY 412 (435)
T ss_pred EC-CCcEEEEEEEcCCHHHHHHHHHHHHhccC-CCcE
Confidence 22 34699999999999999999999999999 5544
No 35
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.7e-39 Score=313.59 Aligned_cols=367 Identities=21% Similarity=0.301 Sum_probs=301.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+++|.|+|+|..|++++.+++++|++++++ +++++++..++++..+... |+|.+.+.+++.+ +|+|.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vL--dp~~~~PA~~va~~~i~~~-------~dD~~al~ela~~--~DViT-- 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVL--DPDADAPAAQVADRVIVAA-------YDDPEALRELAAK--CDVIT-- 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEe--cCCCCCchhhcccceeecC-------CCCHHHHHHHHhh--CCEEE--
Confidence 478999999999999999999999999999 6667788899999998753 8899999999976 88877
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~ 230 (523)
++++.-....++.++.. .++ -|++++++...||...|++|+++|+|+|+| ..+.+.+++.++++++|+|+|+|...
T Consensus 68 ~EfE~V~~~aL~~l~~~-~~v-~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~--~~v~~~~el~~~~~~~g~p~VlKtr~ 143 (375)
T COG0026 68 YEFENVPAEALEKLAAS-VKV-FPSPDALRIAQDRLVEKQFLDKAGLPVAPF--QVVDSAEELDAAAADLGFPAVLKTRR 143 (375)
T ss_pred EeeccCCHHHHHHHHhh-cCc-CCCHHHHHHHhhHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCceEEEecc
Confidence 33422234566666666 454 489999999999999999999999999999 88999999999999999999999987
Q ss_pred CC-CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeE
Q 009903 231 GG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 309 (523)
Q Consensus 231 g~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~ 309 (523)
|+ .|+|.+++++.+++......... ....++|+|++-.+|+|+-+.++.+|++..+...+ ...+++.....
T Consensus 144 gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~e-N~h~~gIl~~s 215 (375)
T COG0026 144 GGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPVAE-NVHRNGILRTS 215 (375)
T ss_pred ccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEEecccc-eeeecCEEEEE
Confidence 77 89999999999988875554322 24459999999999999999999899999987655 34555666666
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCC
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 389 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~ 389 (523)
+.|+. ++.+.+++..+++.++++.|+|.|++.+||+++.+|++++.|+.||++.+.+++..++.++.|++++++.+|.|
T Consensus 216 iaPa~-i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glP 294 (375)
T COG0026 216 IAPAR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLP 294 (375)
T ss_pred EecCc-CCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCC
Confidence 77885 99999999999999999999999999999999999999999999999999889999999999999999999998
Q ss_pred CCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHH
Q 009903 390 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 469 (523)
Q Consensus 390 ~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~ 469 (523)
++.. .....++|+.+.+.+... .....+ ...|+.+ +|+|.....++ .+++|||.+.+.|.+++.
T Consensus 295 Lg~~----~~~~p~vMvNlLG~~~~~------~~~~~~--l~~p~~~--lH~YGK~e~R~--gRKmGHvn~~~~~~~~~~ 358 (375)
T COG0026 295 LGST----TLLSPSVMVNLLGDDVPP------DDVKAV--LALPGAH--LHWYGKAEARP--GRKMGHVNVLGSDSDELE 358 (375)
T ss_pred CCCc----cccCceEEEEecCCCCch------hhhHHH--HhCCCCE--EEEecCccCCC--CCeeeeEEeecCCHHHHH
Confidence 8663 456778898887653211 011111 2234444 57777656666 578999999999977777
Q ss_pred HHHHHHhhcC
Q 009903 470 ERMKRALNDT 479 (523)
Q Consensus 470 ~~~~~~~~~i 479 (523)
+.+.......
T Consensus 359 ~~~~~l~~~~ 368 (375)
T COG0026 359 QLAALLPAKQ 368 (375)
T ss_pred HHHHhhhhhh
Confidence 7665555443
No 36
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1e-38 Score=365.79 Aligned_cols=364 Identities=19% Similarity=0.273 Sum_probs=285.4
Q ss_pred ccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHH
Q 009903 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (523)
Q Consensus 71 ~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~ 139 (523)
.++|||+|+|.. +++++++|+++|+++++++++++..+.....+|+.+.- ..+.+.+++++
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~e--------p~~~e~vl~i~ 625 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFE--------PLTFEDVMNII 625 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEe--------cCCHHHHHHHH
Confidence 579999999975 67899999999999999988777666667788887642 45689999999
Q ss_pred HHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHh
Q 009903 140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (523)
Q Consensus 140 ~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~ 219 (523)
+++++|+|++..+... ...+++.+++.|++++|++++++..+.||..++++|+++|||+|++ ..+.+.+++.+++++
T Consensus 626 ~~e~idgVI~~~gg~~-~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~--~~v~s~ee~~~~~~~ 702 (1050)
T TIGR01369 626 ELEKPEGVIVQFGGQT-PLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKW--KTATSVEEAVEFASE 702 (1050)
T ss_pred hhcCCCEEEEccCcHh-HHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCe--EEECCHHHHHHHHHh
Confidence 9999999998865321 2356788899999999999999999999999999999999999999 789999999999999
Q ss_pred cCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeecee
Q 009903 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299 (523)
Q Consensus 220 ~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~ 299 (523)
+|||+||||.++.||+|+.++++.+||.++++++...+ ..+++|||+||+|+.|+++++++++ |+++.....+..
T Consensus 703 igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s----~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e~~ 777 (1050)
T TIGR01369 703 IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVS----PEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIMEHI 777 (1050)
T ss_pred cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhC----CCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEEee
Confidence 99999999999999999999999999999999875442 3467999999994499999999985 466554432211
Q ss_pred --eeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCH
Q 009903 300 --IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDL 377 (523)
Q Consensus 300 --~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl 377 (523)
...+........|+..++++..+++.+++.+++++||+.|++|+||++++++ +|+||||||++++.+++..++|+|+
T Consensus 778 ~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~-~yvIEvNpR~s~t~p~vs~atGi~l 856 (1050)
T TIGR01369 778 EEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGE-VYVIEVNPRASRTVPFVSKATGVPL 856 (1050)
T ss_pred cccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCe-EEEEEEeCCCCchHHHHHHHHCCCH
Confidence 1111122333456656899999999999999999999999999999998755 9999999999988888889999999
Q ss_pred HHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcc-cCCCCCcceE
Q 009903 378 IEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYV-VPPSYDSLLG 456 (523)
Q Consensus 378 ~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~-v~~~~~~~iG 456 (523)
.+.++++++|.++........ +..+.+ .+..+-.+.-++ ..-|. +.+...| .|
T Consensus 857 ~~~~~~~~lG~~l~~~~~~~~--------------------~~~~~~-~vK~p~f~~~~~----~~~d~~lg~emks-tg 910 (1050)
T TIGR01369 857 IKLATRVMLGKKLEELGVGKE--------------------KEPKYV-AVKEPVFSFSKL----AGVDPVLGPEMKS-TG 910 (1050)
T ss_pred HHHHHHHHcCCCccccccccC--------------------CCCCeE-EEEeccCChhhc----CCCCCcCCceeEe-cC
Confidence 999999999998753321000 111111 111111121111 11111 2233344 89
Q ss_pred EEEEEcCCHHHHHHHHHHHhh
Q 009903 457 KLIVWAPTREKAIERMKRALN 477 (523)
Q Consensus 457 ~vi~~g~s~~ea~~~~~~~~~ 477 (523)
.++..|+|.++|..|+..+..
T Consensus 911 e~~~~g~~~~~a~~ka~~~~~ 931 (1050)
T TIGR01369 911 EVMGIGRDLAEAFLKAQLSSG 931 (1050)
T ss_pred ceEecCCCHHHHHHHHHHhCC
Confidence 999999999999999987754
No 37
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=7.7e-38 Score=326.09 Aligned_cols=395 Identities=17% Similarity=0.192 Sum_probs=279.7
Q ss_pred EEEcCcHHHHHHHHHHHHcC--CcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCC
Q 009903 75 LVANRGEIAVRVIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG 152 (523)
Q Consensus 75 Li~g~g~~~~~vi~aa~~~G--~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g 152 (523)
||+|+|.-...++.++++.. .++++. .. .+.....++.+.++ . .+..|.+.+++++++.++|+|+++.+
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~~~--pg---n~g~~~~~~~~~vp---~-~~~~d~~~l~~~a~~~~id~vvvg~E 71 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFCA--PG---NAGIATSGDATCVP---D-LDISDSAAVISFCRKWGVGLVVVGPE 71 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEEEC--CC---CHHHhhhccceeec---C-CCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 68999999999999999886 333333 22 23344444444331 0 24678999999999999999998874
Q ss_pred cccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCC
Q 009903 153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232 (523)
Q Consensus 153 ~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~ 232 (523)
... ...+++.++..|++++||+.++++++.||..+|++|+++|||+|++ ..+.+.+++.+++++++||+||||..++
T Consensus 72 ~~l-v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~--~~~~~~~e~~~~~~~~g~PvVVKp~~~~ 148 (434)
T PLN02257 72 APL-VAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKY--ETFTDPAAAKKYIKEQGAPIVVKADGLA 148 (434)
T ss_pred hHH-HHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCCEEEEcCCCC
Confidence 321 1467788899999999999999999999999999999999999998 7889999999999999999999999999
Q ss_pred CCCceEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeec-e-eee-----ec
Q 009903 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-C-SIQ-----RR 303 (523)
Q Consensus 233 gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~-~-~~~-----~~ 303 (523)
+|+||+++++.+|+.++++.+... ..|+ ..++||||||+| .|+++.++.|++ .++.+.... . ... .+
T Consensus 149 ~GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl~~~~dhkr~~d~d~g~n 224 (434)
T PLN02257 149 AGKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPN 224 (434)
T ss_pred CCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEEEeeeecccccCCCCCCC
Confidence 999999999999999999886432 1233 368999999999 899999998865 555554321 1 011 11
Q ss_pred CceeeEecCCCCCCHHHHHHHH-HHHH---HHHHHcCCc--cccEEEEEEe-CCCCEEEEEEecCCCCC-ccceeeecCC
Q 009903 304 NQKLLEEAPSPALTPELRKAMG-DAAV---AAAASIGYI--GVGTVEFLLD-ERGSFYFMEMNTRIQVE-HPVTEMISSV 375 (523)
Q Consensus 304 ~~~~~~~~p~~~l~~~~~~~l~-~~a~---~~~~alg~~--G~~~vE~~~~-~~G~~~liEiNpR~~g~-~~~~~~~~Gi 375 (523)
......++|++.++++..+++. +++. +++++.|+. |++.+||+++ ++|.|||||+|+|+|.. ...+...++.
T Consensus 225 tggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~ 304 (434)
T PLN02257 225 TGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLES 304 (434)
T ss_pred CCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcC
Confidence 2234456777668888888754 4443 445566654 9999999999 77789999999999765 3344445899
Q ss_pred CHHHHHHHHHcCCCCCCCccccccc-eeEEEEEEeeCCCCCCCCCCCc-eEEEEecCC--CCcEEE-e--eeecCCcccC
Q 009903 376 DLIEEQIHVAMGGKLRYKQEDIVLQ-GHSIECRINAEDPFKNFRPGPG-RITAYLPAG--GPFVRM-D--SHVYPDYVVP 448 (523)
Q Consensus 376 dl~~~~~~~~~G~~~~~~~~~~~~~-~~ai~~~~~a~~~~~~~~~~~g-~v~~~~~~~--~~~v~~-~--~~~~~G~~v~ 448 (523)
||++.+++++.|.-... +..++ ++++.+.+ +.....+. +..| .|..+.... .+++.+ . +....+..+.
T Consensus 305 Dl~~~~~~~~~g~l~~~---~~~~~~~~av~vv~-a~~gYp~~-~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~ 379 (434)
T PLN02257 305 DLAQVLLAACKGELSGV---SLTWSPDSAMVVVM-ASNGYPGS-YKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNVV 379 (434)
T ss_pred CHHHHHHHHHcCCCCCC---CceECCCceEEEEE-cCCCCCCC-CCCCCEeeCCccccccCCCCEEEECCceEccCCEEE
Confidence 99999999999973222 12333 33444333 33211111 1112 233332111 133322 1 1111122222
Q ss_pred CCCCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeecccCHHHH
Q 009903 449 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYH 491 (523)
Q Consensus 449 ~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~~~~~~ 491 (523)
++ ++|+..|+++|+|.++|+++++++++.|++.|.++..+.=
T Consensus 380 t~-ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~DIg 421 (434)
T PLN02257 380 AA-GGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDIG 421 (434)
T ss_pred EC-CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhh
Confidence 22 3459999999999999999999999999999987654443
No 38
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.3e-38 Score=365.01 Aligned_cols=364 Identities=20% Similarity=0.301 Sum_probs=287.4
Q ss_pred CccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHH
Q 009903 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (523)
Q Consensus 70 ~~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~ 138 (523)
.+++|||+|+|.. +.+++++|+++|+++++++++++..+.....+|+.+.. ..+.+.++++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~e--------p~~~e~vl~I 625 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFE--------PLTLEDVLNV 625 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEc--------cCCHHHHHHH
Confidence 4689999999864 45789999999999999988887777777788987752 4578999999
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHH
Q 009903 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (523)
Q Consensus 139 ~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~ 218 (523)
++++++|+|++..+.. ....+++.+++.|++++|++++++..+.||..++++|+++|||+|++ ..+.+.+++.++++
T Consensus 626 ~~~e~~dgVI~~~g~~-~~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~--~~~~s~ee~~~~~~ 702 (1068)
T PRK12815 626 AEAENIKGVIVQFGGQ-TAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPG--LTATDEEEAFAFAK 702 (1068)
T ss_pred HhhcCCCEEEEecCcH-HHHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCe--EEeCCHHHHHHHHH
Confidence 9999999999976532 12466788899999999999999999999999999999999999999 78999999999999
Q ss_pred hcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeece
Q 009903 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298 (523)
Q Consensus 219 ~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~ 298 (523)
++|||+||||.++.||+|+.++++.+||.++++.+.. ..+++|||+||+| .|++++++.|++ .+...+..+.
T Consensus 703 ~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s------~~~~vlIeefI~G-~E~~Vd~i~dg~-~v~i~~i~e~ 774 (1068)
T PRK12815 703 RIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENAS------QLYPILIDQFIDG-KEYEVDAISDGE-DVTIPGIIEH 774 (1068)
T ss_pred hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhc------CCCCEEEEEeecC-ceEEEEEEEcCC-ceEEeeEEEE
Confidence 9999999999999999999999999999999987621 3478999999999 899999999865 4433322221
Q ss_pred ee--eecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCC
Q 009903 299 SI--QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 376 (523)
Q Consensus 299 ~~--~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gid 376 (523)
.. ..+........|+..++++..+++.+++.+++++||+.|++|+||++++++ +|+||||||++++.+++..++|+|
T Consensus 775 ~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~-~yviEiNpR~s~t~~~~skatGv~ 853 (1068)
T PRK12815 775 IEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDE-IYVLEVNPRASRTVPFVSKATGVP 853 (1068)
T ss_pred eeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCc-EEEEEEeCCCCccHHHHHHHHCCC
Confidence 11 111222333445556899999999999999999999999999999998765 999999999998888888899999
Q ss_pred HHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcc-cCCCCCcce
Q 009903 377 LIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYV-VPPSYDSLL 455 (523)
Q Consensus 377 l~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~-v~~~~~~~i 455 (523)
+.++++++++|.++.....+ ..+.|..+.+... .+-.++.++ ..-|. +.+...+ .
T Consensus 854 l~~~~~~~~lG~~l~~~~~~------------------~~~~~~~~~~~vk-~p~f~f~~~----~~~~~~lg~~m~s-t 909 (1068)
T PRK12815 854 LAKLATKVLLGKSLAELGYP------------------NGLWPGSPFIHVK-MPVFSYLKY----PGVDNTLGPEMKS-T 909 (1068)
T ss_pred HHHHHHHHHcCCChhhcccc------------------cccCCCCCeEEEE-eccCChhHc----ccCCCccCCcceE-c
Confidence 99999999999987432210 0112222333222 222232221 11122 3344445 8
Q ss_pred EEEEEEcCCHHHHHHHHHHHhh
Q 009903 456 GKLIVWAPTREKAIERMKRALN 477 (523)
Q Consensus 456 G~vi~~g~s~~ea~~~~~~~~~ 477 (523)
|.|+..|.|.++|+.|+..+..
T Consensus 910 Ge~~~~~~~~~~a~~k~~~~~~ 931 (1068)
T PRK12815 910 GEVMGIDKDLEEALYKGYEASD 931 (1068)
T ss_pred ceeEeccCCHHHHHHHHHHhcC
Confidence 9999999999999999987754
No 39
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=1.2e-38 Score=366.46 Aligned_cols=364 Identities=20% Similarity=0.307 Sum_probs=283.2
Q ss_pred CccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHH
Q 009903 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA 138 (523)
Q Consensus 70 ~~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~ 138 (523)
.+|+|||+|+|.. +.+++++|+++|+++++++++++..+....++|+.+.. ..+.+.++++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e--------~~~~e~v~~i 624 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFE--------PLTLEDVLEI 624 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeec--------CCCHHHHHHH
Confidence 4689999999873 46789999999999999988777666677888887642 4578999999
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHH
Q 009903 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (523)
Q Consensus 139 ~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~ 218 (523)
++++++|+|++..|.... ..++..+++.|++++|++++++..+.||..++++|+++|||+|++ ..+.+.+++.++++
T Consensus 625 ~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~--~~~~s~ee~~~~~~ 701 (1066)
T PRK05294 625 IEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPN--GTATSVEEALEVAE 701 (1066)
T ss_pred HHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCe--EEECCHHHHHHHHH
Confidence 999999999986553211 366788999999999999999999999999999999999999999 78899999999999
Q ss_pred hcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeece
Q 009903 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298 (523)
Q Consensus 219 ~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~ 298 (523)
++|||+||||..++||+|+.++++.+||..+++.+...+ ..++++||+||+|..|++++++++++ .++.....+.
T Consensus 702 ~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s----~~~~vlIEefI~G~~E~sV~~v~dg~-~v~i~~i~e~ 776 (1066)
T PRK05294 702 EIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVS----PDHPVLIDKFLEGAIEVDVDAICDGE-DVLIGGIMEH 776 (1066)
T ss_pred hcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhC----CCCcEEEEecCCCCEEEEEEEEecCC-eEEEeeeEEe
Confidence 999999999999999999999999999999998865432 34689999999994499999998865 3333322111
Q ss_pred --eeeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCC
Q 009903 299 --SIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 376 (523)
Q Consensus 299 --~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gid 376 (523)
....+........|+..++++..+++.+++.+++++||+.|++|+||++++++ +|+||||||++++.+++..++|+|
T Consensus 777 i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~-~yViEiNpR~s~t~~~~s~atGi~ 855 (1066)
T PRK05294 777 IEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDE-VYVIEVNPRASRTVPFVSKATGVP 855 (1066)
T ss_pred eeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCe-EEEEEEecCCCccHHHHHHHhCcc
Confidence 11111122233345555899999999999999999999999999999998655 999999999998888888999999
Q ss_pred HHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCc-ccCCCCCcce
Q 009903 377 LIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDY-VVPPSYDSLL 455 (523)
Q Consensus 377 l~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~-~v~~~~~~~i 455 (523)
+.+.++++++|.+++...... ++.| +.+ .+..|-.++-++ ..-+ .+.+.+.| .
T Consensus 856 ~~~~~~~~~lG~~l~~~~~~~------------------~~~~--~~~-~vk~p~fs~~~~----~~~~~~lg~~m~s-t 909 (1066)
T PRK05294 856 LAKIAARVMLGKKLAELGYTK------------------GLIP--PYV-AVKEAVFPFNKF----PGVDPLLGPEMKS-T 909 (1066)
T ss_pred HHHHHHHHHcCCChhhcCCCc------------------cCCC--Cce-EEEeccCChhhc----cCCCCccCceeee-c
Confidence 999999999999875432100 0111 111 111221122111 1111 12333445 8
Q ss_pred EEEEEEcCCHHHHHHHHHHHh
Q 009903 456 GKLIVWAPTREKAIERMKRAL 476 (523)
Q Consensus 456 G~vi~~g~s~~ea~~~~~~~~ 476 (523)
|.++..|.|.+||+.|+....
T Consensus 910 ge~~~~~~~~~~a~~k~~~~~ 930 (1066)
T PRK05294 910 GEVMGIDRTFGEAFAKAQLAA 930 (1066)
T ss_pred CceeecCCCHHHHHHHHHHhc
Confidence 999999999999999988775
No 40
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=3.7e-38 Score=311.65 Aligned_cols=374 Identities=21% Similarity=0.306 Sum_probs=304.4
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 73 ~ILi~g-~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
+|+..+ ...+|...++++++.|+.|+++++++.+......++|..+.. +...+.+..++++.++|+|+|+.
T Consensus 7 ~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~e--------P~~~E~v~~Ii~~E~~Dailp~~ 78 (400)
T COG0458 7 VIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIE--------PITKEPVEKIIEKERPDAILPTL 78 (400)
T ss_pred eeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeee--------cCcHHHHHHHHHhcCcceeeccc
Confidence 444444 456789999999999999999999998888889999999975 57889999999999999999987
Q ss_pred CcccccH---HH--HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEE
Q 009903 152 GFLAENA---VF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI 226 (523)
Q Consensus 152 g~~~e~~---~~--a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~Vv 226 (523)
|-..... .+ .-.++++|++++|.+.++++++.||.+++++|++.|+|+| + ....+.+++.+..+++|||+||
T Consensus 79 ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~--~~~~~~~e~~~~~~~ig~PvIV 155 (400)
T COG0458 79 GGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-S--RIAHSVEEADEIADEIGYPVIV 155 (400)
T ss_pred CCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-c--cccccHHHHhhhHhhcCCCEEE
Confidence 6432221 11 1235677999999999999999999999999999999999 5 6789999999999999999999
Q ss_pred EeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeece--eeeecC
Q 009903 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SIQRRN 304 (523)
Q Consensus 227 KP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~--~~~~~~ 304 (523)
||..+.||.|..+++|.+||.+........+ +..++|+||+|.|++|+..++++|.+++++.....+. ....+.
T Consensus 156 rP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvht 231 (400)
T COG0458 156 KPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHT 231 (400)
T ss_pred ecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCccccccccc
Confidence 9999999999999999999999988765543 3469999999999999999999999989888755442 344556
Q ss_pred ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCC-CCEEEEEEecCCCCCccceeeecCCCHHHHHHH
Q 009903 305 QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIH 383 (523)
Q Consensus 305 ~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~-G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~ 383 (523)
.+.....|++.+++...+.++..+.++++.||..|.++++|.++++ |++|+||+|||++++..+.++++|..+......
T Consensus 232 gdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaak 311 (400)
T COG0458 232 GDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAK 311 (400)
T ss_pred cceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHHH
Confidence 6777788999899999999999999999999999999999999965 599999999999999999999999999999999
Q ss_pred HHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcC
Q 009903 384 VAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAP 463 (523)
Q Consensus 384 ~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~ 463 (523)
+++|..++....++...+. ..|.|+.+.+.... +.+++-.+ ....+++...+.+ .|.|++.|+
T Consensus 312 la~g~~l~Ei~n~it~~t~------------a~fePsldyvv~k~-pr~~f~kf---~~~~~~l~~~mks-~gevm~igr 374 (400)
T COG0458 312 LAVGYTLDEIRNDITGRTP------------ASFEPSLDYVVTKI-PRFDFEKF---PGADRRLGTQMKS-VGEVMAIGR 374 (400)
T ss_pred hhcccCchhhcCccccccc------------cccCCccceeeeec-CCCCcccc---cccccceeeeeec-cceEEEecc
Confidence 9999877654433332222 23566666544432 22232211 1122334444556 899999999
Q ss_pred CHHHHHHHHHHHhhc
Q 009903 464 TREKAIERMKRALND 478 (523)
Q Consensus 464 s~~ea~~~~~~~~~~ 478 (523)
+++||++||.+.++.
T Consensus 375 ~f~eal~ka~~~l~~ 389 (400)
T COG0458 375 TFEEALQKALRSLEI 389 (400)
T ss_pred hHHHHHHHHHHhhcc
Confidence 999999999888764
No 41
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3.5e-37 Score=324.10 Aligned_cols=397 Identities=17% Similarity=0.098 Sum_probs=271.7
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc--CCcEEEEecCCCCCCcc--ccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~--G~~vi~v~~~~~~~~~~--~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
+||||+|+|.....++.++++. |++++++..+.++.... ..+++..+.+ +..|.+.++++++++++|+|
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~-------~~~d~~~l~~~a~~~~id~V 73 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIG-------NINSPEEVKKVAKEVNPDLV 73 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEec-------CCCCHHHHHHHHHHhCCCEE
Confidence 4899999999999999999998 99999885422321111 1122444443 36789999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCC-CCCCccCCCHHHHHHHHHhcCCcEEE
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTV-PGSDGLLQSTEEAVKLADELGFPVMI 226 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p-~~~~~~~~s~~e~~~~~~~~g~P~Vv 226 (523)
+++.+.. -...+++.++++|++++||+.+++++++||..||++|+++|||+| .+ ..+.+.+++.++++.. +|+||
T Consensus 74 i~g~E~~-l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~--~~~~~~~ea~~~~~~~-~PvVV 149 (486)
T PRK05784 74 VIGPEEP-LFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRY--KVFYDVEEAAKFIEYG-GSVAI 149 (486)
T ss_pred EECCchH-HHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccc--eEeCCHHHHHHHHhhc-CCEEE
Confidence 9876310 112567889999999999999999999999999999999999997 56 6788999999988665 69999
Q ss_pred EeCCCCCCCceEEeCCHHH-----HHHHHHHHHHHH---HHhcC--CCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeee
Q 009903 227 KATAGGGGRGMRLAKEPDE-----FVKLLQQAKSEA---AAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER 296 (523)
Q Consensus 227 KP~~g~gs~Gv~~v~~~~e-----l~~~~~~~~~~~---~~~~~--~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~ 296 (523)
||..++||+||.+|++.++ +.+++..+.... ...++ +..+||||||+| .|++++++.|++ .++.+...
T Consensus 150 KP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~l~~~ 227 (486)
T PRK05784 150 KPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEYTLQVLTDGE-TVIPLPLA 227 (486)
T ss_pred eeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEEEEEEEECCC-eEEEeeee
Confidence 9999999999999999873 445543222111 12233 368999999999 999999998754 44433221
Q ss_pred -ceee-ee-----cCceeeEecC----CCCCCHHHHHHHHHHHHHHHHHcC----C--ccccEEEEEEe-CCCCEEEEEE
Q 009903 297 -DCSI-QR-----RNQKLLEEAP----SPALTPELRKAMGDAAVAAAASIG----Y--IGVGTVEFLLD-ERGSFYFMEM 358 (523)
Q Consensus 297 -~~~~-~~-----~~~~~~~~~p----~~~l~~~~~~~l~~~a~~~~~alg----~--~G~~~vE~~~~-~~G~~~liEi 358 (523)
+... .. ++.....++| .|.++++..+++.+++.+++++|+ + .|++|+||++| ++| |++||+
T Consensus 228 qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~vIE~ 306 (486)
T PRK05784 228 QDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PTVIEY 306 (486)
T ss_pred EeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cEEEEE
Confidence 1111 11 1122333456 555778877788788887776664 3 49999999999 888 999999
Q ss_pred ecCCCCC--ccceeeecCCCHHHHHHHHHcCCCCCCCccccccc-eeEEEEEEeeCCCCCCCCCCCceEEEEecC--CCC
Q 009903 359 NTRIQVE--HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQ-GHSIECRINAEDPFKNFRPGPGRITAYLPA--GGP 433 (523)
Q Consensus 359 NpR~~g~--~~~~~~~~Gidl~~~~~~~~~G~~~~~~~~~~~~~-~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~--~~~ 433 (523)
|+|+|+. ..+... ++.|+++.+++++.|+--.. ++.++ .+++.+.+.+..+-....+..|........ ..+
T Consensus 307 n~R~Gdpe~~~llp~-l~~dl~~~~~~~~~g~l~~~---~~~~~~~~~~~vv~as~gYp~~~~~~~g~~i~~~~~~~~~~ 382 (486)
T PRK05784 307 YSRFGDPEASNIIPR-IESDFGELFELAATGKLSKA---KIKFNEEPSVVKAIAPLGYPLSRDLASGRRIVVDLDKIKEE 382 (486)
T ss_pred ecccCCchHHHHHHh-ccCCHHHHHHHHHcCCCCCC---CeeecCCceEEEEECCCCCCCcccCCCCCEEECCccccccC
Confidence 9999764 234444 56699999999999962111 12333 334444443321111101233433222111 112
Q ss_pred cEEE-eeeec-CCcccCCCCCcceEEEEEEcCCHHHHHHHHHHHhhcC-eEeecccC
Q 009903 434 FVRM-DSHVY-PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDT-IITGVPTT 487 (523)
Q Consensus 434 ~v~~-~~~~~-~G~~v~~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i-~i~~~~~~ 487 (523)
++.+ ..... .+..+-+. +.|+..|++.|+|.++|+++++++++.| .++|.++.
T Consensus 383 ~~~v~~ag~~~~~~~~~t~-ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~~yR 438 (486)
T PRK05784 383 GCLVFFGSVELEGGQLITK-GSRALEIVAIGKDFEEAYEKLERCISYVSSDTKLIYR 438 (486)
T ss_pred CCEEEECCceeeCCEEEEc-CCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCCCcc
Confidence 2111 11111 12222222 3458899999999999999999999999 89887753
No 42
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.2e-38 Score=294.43 Aligned_cols=382 Identities=18% Similarity=0.208 Sum_probs=296.6
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
...|||++|+|+.|..++-++.++|.+|+.+ |...+++..+.++..+.++ ..|.+.+...++++++|.|+|
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAV--DrY~~APAmqVAhrs~Vi~-------MlD~~al~avv~rekPd~IVp 81 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAV--DRYANAPAMQVAHRSYVID-------MLDGDALRAVVEREKPDYIVP 81 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhcCCEEEEe--cCcCCChhhhhhhheeeee-------ccCHHHHHHHHHhhCCCeeee
Confidence 3467999999999999999999999999999 6667788899999999885 899999999999999999998
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHH-HCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEe
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMK-NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~-~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP 228 (523)
-.+. -+......+|+.|+.++ |+.++...+.|+...|++.+ ++|+|+.+| ..+.+.+++.+.++++|||||+||
T Consensus 82 EiEA--I~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y--~fa~s~~e~~~a~~~iGfPcvvKP 156 (394)
T COG0027 82 EIEA--IATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKY--RFADSLEELRAAVEKIGFPCVVKP 156 (394)
T ss_pred hhhh--hhHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccc--cccccHHHHHHHHHHcCCCeeccc
Confidence 5422 12344566789999976 89999999999999999884 689999999 779999999999999999999999
Q ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceee
Q 009903 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (523)
Q Consensus 229 ~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~ 308 (523)
..+++|+|..+++++++++++|+.+..... -+++++|+|+||+-..|+++-.++.-+|.-. +..-.-..+.+..+..
T Consensus 157 vMSSSGkGqsvv~~~e~ve~AW~~A~~g~R--~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~-Fc~PIGHrq~dgdY~E 233 (394)
T COG0027 157 VMSSSGKGQSVVRSPEDVEKAWEYAQQGGR--GGSGRVIVEEFVKFDFEITLLTVRAVDGTGS-FCAPIGHRQEDGDYRE 233 (394)
T ss_pred ccccCCCCceeecCHHHHHHHHHHHHhcCC--CCCCcEEEEEEecceEEEEEEEEEEecCCCC-cCCCcccccCCCChhc
Confidence 999999999999999999999999875432 2467999999999978888887774333321 2111112233444455
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCC
Q 009903 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 388 (523)
Q Consensus 309 ~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~ 388 (523)
.+.|.. +++...++.+.++.++.++||-.|.|++|+++..|. .+|-|+.|||+.+...+-.+-++|-+++++++.+|.
T Consensus 234 SWQP~~-mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDe-V~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGL 311 (394)
T COG0027 234 SWQPQE-MSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDE-VIFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGL 311 (394)
T ss_pred ccCccc-cCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCE-EEEeecCCCCCCCceEEEEeccchHHHHHHHHHhCC
Confidence 566776 999999999999999999999999999999999876 999999999998876776777999999999999999
Q ss_pred CCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHH
Q 009903 389 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKA 468 (523)
Q Consensus 389 ~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea 468 (523)
|++.... .+.+....+++.... .-+....+.. ....|++.+.+. |.... ...+++|..+++++|.++|
T Consensus 312 Pi~~i~~----~~P~AS~vI~~~~~~--~~~~f~~l~~--AL~~p~t~vRlF---GKP~~-~~~RRmGVALA~a~~Ve~A 379 (394)
T COG0027 312 PIPEIRQ----ISPAASAVILAQETS--QAPTFDGLAE--ALGVPDTQVRLF---GKPEA-DGGRRLGVALATAESVEEA 379 (394)
T ss_pred Cccceee----ecccccceeeccccc--cCCchhhHHH--HhcCCCceEEEe---cCCcc-cCCceeeEEEecCccHHHH
Confidence 9864432 233333333433211 1111111111 112233222111 11111 1245799999999999999
Q ss_pred HHHHHHHhhcCeEe
Q 009903 469 IERMKRALNDTIIT 482 (523)
Q Consensus 469 ~~~~~~~~~~i~i~ 482 (523)
+++++++.+.|.+.
T Consensus 380 re~A~~aa~~i~v~ 393 (394)
T COG0027 380 RERARKAASAIEVK 393 (394)
T ss_pred HHHHHHHHhheecC
Confidence 99999999998875
No 43
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=4.9e-37 Score=316.63 Aligned_cols=339 Identities=16% Similarity=0.184 Sum_probs=247.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccC
Q 009903 128 SYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL 207 (523)
Q Consensus 128 ~~~~~~~l~~~~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~ 207 (523)
+..|.+.+++++++.++|+|+++.+... ...+++.+++.|++++||+.++++++.||..+|++|+++|||+|++ ..+
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l-~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~--~~~ 88 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPL-IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADY--KEV 88 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCE--EEE
Confidence 4788999999999999999998775311 1356788999999999999999999999999999999999999998 778
Q ss_pred CCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCC
Q 009903 208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (523)
Q Consensus 208 ~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~ 287 (523)
.+.+++.+++++++||+||||..+++|+||.++++.+|+.++++.+.... ..+.+||||||+| .|+++.++.+++
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~ 163 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGD 163 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCC
Confidence 99999999999999999999999999999999999999999998865321 1358999999999 999999999855
Q ss_pred CcEEEE-e-eece-ee-----eecCceeeEecCCCCCCHHHHHHH-HHHHHHHHHHc---CC--ccccEEEEEEeCCCCE
Q 009903 288 GNVVHF-G-ERDC-SI-----QRRNQKLLEEAPSPALTPELRKAM-GDAAVAAAASI---GY--IGVGTVEFLLDERGSF 353 (523)
Q Consensus 288 g~v~~~-~-~~~~-~~-----~~~~~~~~~~~p~~~l~~~~~~~l-~~~a~~~~~al---g~--~G~~~vE~~~~~~G~~ 353 (523)
. .+.+ . ..+. .. ..+......++|.+.++++..+++ .+++.+++++| |+ .|++|+||+++++| |
T Consensus 164 ~-~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~ 241 (379)
T PRK13790 164 L-AVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-P 241 (379)
T ss_pred E-EEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-e
Confidence 2 2222 1 1110 00 111122334566665777766555 56666666666 54 59999999999888 9
Q ss_pred EEEEEecCCCCC-ccceeeecCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEE----eeCCCCCCCCCCCceEEEEe
Q 009903 354 YFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRI----NAEDPFKNFRPGPGRITAYL 428 (523)
Q Consensus 354 ~liEiNpR~~g~-~~~~~~~~Gidl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~----~a~~~~~~~~~~~g~v~~~~ 428 (523)
||+|+|+|+|+. ...+...+|+|+++.+++.++|.+++....+ ..++.+.+ |+..+.+ ...+..+.
T Consensus 242 ~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~~~----~~~~~v~~~s~gyp~~~~~-----~~~i~~~~ 312 (379)
T PRK13790 242 KVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKN----ESIVGVMLASKGYPDAYEK-----GHKVSGFD 312 (379)
T ss_pred EEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCceeEcC----CCEEEEEEccCCCCCCCCC-----CCeeeecC
Confidence 999999999764 3344455899999999999999876543322 22333333 3322211 12333221
Q ss_pred cCCCCcEEEeeee--cCCcccCCCCCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeecccCHHH
Q 009903 429 PAGGPFVRMDSHV--YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEY 490 (523)
Q Consensus 429 ~~~~~~v~~~~~~--~~G~~v~~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~~~~~ 490 (523)
....+. ...+ ..|..++ + +++++.|++.|+|.+||.++++++++.|.+.|..+..+.
T Consensus 313 --~~~~~~-~~~~~~~~~~~~~-~-ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~R~di 371 (379)
T PRK13790 313 --LNENYF-VSGLKKQGDTFVT-S-GGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLFYRHDI 371 (379)
T ss_pred --CCCeEE-ECCccccCCeEEE-C-CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechh
Confidence 111111 1111 1222222 1 346999999999999999999999999999997765443
No 44
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=313.53 Aligned_cols=295 Identities=19% Similarity=0.235 Sum_probs=236.8
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcC--CcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G--~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
|+||||+|+|... .+++++++.| ++|++++. ++..+....+|+++.++. ..+....+.++++++++++|+|+
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~--~~~~~~~~~~d~~~~~p~---~~~~~~~~~l~~~~~~~~id~ii 74 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADI--SELAPALYFADKFYVVPK---VTDPNYIDRLLDICKKEKIDLLI 74 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECC--CCcchhhHhccCcEecCC---CCChhHHHHHHHHHHHhCCCEEE
Confidence 5789999998665 8999999995 99999854 455667788998887632 22334578999999999999999
Q ss_pred eCCCcccc-cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHH--HHHhcCCcEE
Q 009903 149 PGYGFLAE-NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK--LADELGFPVM 225 (523)
Q Consensus 149 ~~~g~~~e-~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~--~~~~~g~P~V 225 (523)
|+.+.... .....+.++..|+++++++++++..+.||..|+++|+++|+|+|++ ..+.+.+++.+ +.++++||+|
T Consensus 75 ~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~~~P~v 152 (326)
T PRK12767 75 PLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKS--YLPESLEDFKAALAKGELQFPLF 152 (326)
T ss_pred ECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCE--EcccCHHHHHhhhhcccCCCCEE
Confidence 98653211 1234456777899888999999999999999999999999999999 67889999887 5678899999
Q ss_pred EEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCc
Q 009903 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQ 305 (523)
Q Consensus 226 vKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~ 305 (523)
+||..|.+|+|++++++.+|+.+++++. ..+++||||+| .|++++++.+.+|+++.+...+........
T Consensus 153 iKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~G-~e~~v~~~~~~~G~~~~~~~~~~~~~~~g~ 221 (326)
T PRK12767 153 VKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRKRIEVRAGE 221 (326)
T ss_pred EEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccCC-ceEEEEEEEcCCCCEEEEEEeeeeeecCCc
Confidence 9999999999999999999999888653 58999999999 999999999867788776554332111111
Q ss_pred eeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHH
Q 009903 306 KLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 385 (523)
Q Consensus 306 ~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~ 385 (523)
...... .. .+++.+.+.+++++||+.|++++||++++ |++++||||||++|+..+ ...+|+|+.+++++.+
T Consensus 222 ~~~~~~----~~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~~~-~~~~G~n~~~~~~~~~ 292 (326)
T PRK12767 222 TSKGVT----VK---DPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGYPL-SYMAGANEPDWIIRNL 292 (326)
T ss_pred eeEEEE----cC---CHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcchh-hHhhCCCHHHHHHHHH
Confidence 111111 11 26788999999999999999999999998 559999999999987654 3469999999999999
Q ss_pred cCCCCCCC
Q 009903 386 MGGKLRYK 393 (523)
Q Consensus 386 ~G~~~~~~ 393 (523)
+|++++..
T Consensus 293 ~g~~~~~~ 300 (326)
T PRK12767 293 LGGENEPI 300 (326)
T ss_pred cCCCCCcc
Confidence 99987543
No 45
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=3.7e-36 Score=283.02 Aligned_cols=208 Identities=48% Similarity=0.828 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCC
Q 009903 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN 263 (523)
Q Consensus 184 dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~ 263 (523)
||..++++++++|+|+|+++...+.+.+++.++++++|||++|||+.|.||+|+.++++.++|..+++.....+...|++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999995433499999999999999999999999999999999999999999999999998888999
Q ss_pred CcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEE
Q 009903 264 DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTV 343 (523)
Q Consensus 264 ~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~v 343 (523)
.++++|+|+++++|+.+++++|+.|++++++.++|..+.++.++....|++.++++.+++|.+.+.++++++|+.|++++
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tv 160 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTV 160 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC-CCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCCCC
Q 009903 344 EFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 391 (523)
Q Consensus 344 E~~~~~-~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~~~ 391 (523)
||.+++ +|++||||+|||++.+++++++++|+|+.++.+++++|.+++
T Consensus 161 ef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 161 EFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp EEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred EEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 999996 888999999999999999999999999999999999999874
No 46
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.8e-34 Score=281.41 Aligned_cols=395 Identities=19% Similarity=0.213 Sum_probs=284.1
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCC-CCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSY-LLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~-~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+||||+|+|.--..++.++.+.+....++....++-. ...+....+ +. .+.+.|++++++.++|.++.+
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~---a~~~~~~~~-------~~~~~~~~lv~fA~~~~idl~vVG 70 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGT---ALEAYLVNI-------EIDTDHEALVAFAKEKNVDLVVVG 70 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCcc---chhhhhccC-------ccccCHHHHHHHHHHcCCCEEEEC
Confidence 5899999998888899999988765555543333222 112222222 12 578999999999999999988
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~ 230 (523)
.+... ...+.+.+++.||+++||+.+++++..+|.++|++|+++|||++.| ..+++.+++.+++++.|.|+||||..
T Consensus 71 PE~pL-~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y--~~f~~~e~a~ayi~~~g~piVVKadG 147 (428)
T COG0151 71 PEAPL-VAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY--EVFTDPEEAKAYIDEKGAPIVVKADG 147 (428)
T ss_pred CcHHH-hhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccc--cccCCHHHHHHHHHHcCCCEEEeccc
Confidence 74221 1367799999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred CCCCCceEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeee-ce------eee
Q 009903 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DC------SIQ 301 (523)
Q Consensus 231 g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~-~~------~~~ 301 (523)
-++|+||.++.+.++..+++..+.... .|+ ...++||||++| .|+|+.+++|++ +++.+... +. ...
T Consensus 148 LaaGKGV~V~~~~eeA~~a~~~~l~~~--~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~p~aQDhKra~dgD~G 223 (428)
T COG0151 148 LAAGKGVIVAMTLEEAEAAVDEMLEGN--AFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPMPTAQDHKRAYDGDTG 223 (428)
T ss_pred ccCCCCeEEcCCHHHHHHHHHHHHhhc--cccCCCCcEEEEecccc-eEEEEEEEEcCC-eEEECccccccccccCCCCC
Confidence 999999999999999999988876542 233 246999999999 999999999977 66665332 11 112
Q ss_pred ecCceeeEecCCCCCCHHHHHHHH-HHHHHHHHHc---C--CccccEEEEEEeCCCCEEEEEEecCCCCC-ccceeeecC
Q 009903 302 RRNQKLLEEAPSPALTPELRKAMG-DAAVAAAASI---G--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISS 374 (523)
Q Consensus 302 ~~~~~~~~~~p~~~l~~~~~~~l~-~~a~~~~~al---g--~~G~~~vE~~~~~~G~~~liEiNpR~~g~-~~~~~~~~G 374 (523)
.++..++.++|+|.++++..+++. ++....++.+ | |.|++-..|+++++| |++||.|.|+|-- ...+.....
T Consensus 224 PNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~ 302 (428)
T COG0151 224 PNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLE 302 (428)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhcc
Confidence 233345567899989998877766 6666666655 4 559999999999999 9999999999422 122223367
Q ss_pred CCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEE-e-cCCCCcEE-E--eeeecCCcccCC
Q 009903 375 VDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAY-L-PAGGPFVR-M--DSHVYPDYVVPP 449 (523)
Q Consensus 375 idl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~-~-~~~~~~v~-~--~~~~~~G~~v~~ 449 (523)
-||.+.+...+.|.--... ......+.++.+.+.+..+-.. +..|..... . ... .++. + .+....+..+-.
T Consensus 303 sdl~~~~~a~~~g~L~~~~-~~~~~~~a~v~vvlA~~GYP~~--~~kG~~I~~~~~~~~-~~~~vf~Agv~~~~~~~lvt 378 (428)
T COG0151 303 SDLVELLLAAVDGKLDEVE-ILFWDKGAAVGVVLAAEGYPGD--PEKGDVITGDEEAEE-EGAKVFHAGVKLDDGGQLVT 378 (428)
T ss_pred ccHHHHHHHHHhCCccccc-hhhccCCceEEEEEecCCCCCC--CCCCCEEecChhhcc-cCcEEEEeeEeccCCceEEe
Confidence 7999999999999522111 1111223444444433322111 344533333 1 121 1222 1 222222322333
Q ss_pred CCCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeecccCHH
Q 009903 450 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIE 489 (523)
Q Consensus 450 ~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~~~~ 489 (523)
+ ++|.=.|+..|+|.+||.++++++++.|.++|.++..+
T Consensus 379 ~-GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~~yRkD 417 (428)
T COG0151 379 S-GGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGLFYRKD 417 (428)
T ss_pred c-CCeEEEEEecCCCHHHHHHHHHHHHhhcCCCCceeecc
Confidence 3 33466899999999999999999999999999877544
No 47
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=3e-33 Score=279.44 Aligned_cols=273 Identities=22% Similarity=0.288 Sum_probs=208.5
Q ss_pred ccEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH
Q 009903 71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (523)
Q Consensus 71 ~k~ILi~g~g~---------~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (523)
+++|.|+-+|. ++..+.+++++.||+++.++.+.. . ++....+
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~--~--------------------------~~~~l~~ 54 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGK--E--------------------------LVAKLLE 54 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCch--h--------------------------HHHHhhc
Confidence 34677765553 378899999999999998842210 0 1111223
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhc
Q 009903 142 RGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220 (523)
Q Consensus 142 ~~id~Vi~~-~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~ 220 (523)
.++|.|++. +|...|+..++.+++.+|+|++|++++++..+.||..++++|+++|||+|++ ..+.+.. ...+.+
T Consensus 55 ~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~--~~~~~~~---~~~~~~ 129 (296)
T PRK14569 55 LKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMA--KFLTDKL---VAEDEI 129 (296)
T ss_pred cCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCe--EEEchhh---hhHhhc
Confidence 579999887 5666788899999999999999999999999999999999999999999998 4454321 235678
Q ss_pred CCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeec-e-
Q 009903 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-C- 298 (523)
Q Consensus 221 g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~-~- 298 (523)
+||+||||..|++|.|++++++.+||.++++.+.. .+.+||||||+| +||++.++.++....+.+.... .
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G-~E~tv~vl~~~~~~~~~i~~~~~~~ 201 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTG-KEITVAIVNDEVYSSVWIEPQNEFY 201 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEccccc-EEEEEEEECCcCcceEEEecCCCcC
Confidence 99999999999999999999999999999987532 257999999999 9999999865332222221111 0
Q ss_pred ee-eecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCC----ccceeeec
Q 009903 299 SI-QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMIS 373 (523)
Q Consensus 299 ~~-~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~----~~~~~~~~ 373 (523)
.. ..+........|+. ++++..+++.+.+.+++++||+.|++++||+++++|++|++|||||||.+ .+......
T Consensus 202 ~~~~k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~ 280 (296)
T PRK14569 202 DYESKYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAAE 280 (296)
T ss_pred ChhhccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHHHHHHHc
Confidence 00 01112233345665 88888899999999999999999999999999988999999999999854 23444468
Q ss_pred CCCHHHHHHHHH
Q 009903 374 SVDLIEEQIHVA 385 (523)
Q Consensus 374 Gidl~~~~~~~~ 385 (523)
|+|+.+++..+.
T Consensus 281 G~~~~~li~~ii 292 (296)
T PRK14569 281 GVDFDSFVKRII 292 (296)
T ss_pred CCCHHHHHHHHH
Confidence 999888776553
No 48
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=100.00 E-value=5.7e-33 Score=275.35 Aligned_cols=291 Identities=21% Similarity=0.259 Sum_probs=232.8
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccH
Q 009903 79 RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENA 158 (523)
Q Consensus 79 ~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g~~~e~~ 158 (523)
+.+.++.+++.+++. -.+.++.++.++..+....||+.+.. |. ++....+.++++|+++++|+++|+..... ..
T Consensus 7 ~~s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~e-P~---~~~~yv~~~l~~C~~~~Idv~~P~~~~~~-l~ 80 (329)
T PF15632_consen 7 GFSSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLE-PA---DGEEYVDWCLDFCKEHGIDVFVPGRNREL-LA 80 (329)
T ss_pred CCccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeec-CC---CHHHHHHHHHHHHHHhCCeEEEcCccHHH-HH
Confidence 345678899999886 55555555778888899999999974 32 44445889999999999999999864311 24
Q ss_pred HHHHHHHHcCCceeC-CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCc---EEEEeCCCCCC
Q 009903 159 VFVEMCREHGINFIG-PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP---VMIKATAGGGG 234 (523)
Q Consensus 159 ~~a~~~~~~gl~~~g-~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P---~VvKP~~g~gs 234 (523)
...+.+++.|++++- ++.++++.+.||..+.+.|++.|+|+|++ ..+++.++++.+++++++| ++|||..|.||
T Consensus 81 ~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~--~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg 158 (329)
T PF15632_consen 81 AHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPY--WRVRTADELKAAYEELRFPGQPLCVKPAVGIGG 158 (329)
T ss_pred HHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCE--EEeCCHHHHHHHHHhcCCCCceEEEecccCCCc
Confidence 555778999999887 78999999999999999999999999999 7899999999999998776 99999999999
Q ss_pred CceEEeC-CHHHHHHHHH---------HHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecC
Q 009903 235 RGMRLAK-EPDEFVKLLQ---------QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRN 304 (523)
Q Consensus 235 ~Gv~~v~-~~~el~~~~~---------~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~ 304 (523)
.|.++++ +.+++...++ .+...-...-.-.++||+||++| .||||+++++. |+++....+... ..
T Consensus 159 ~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaaV~R~K~---G~ 233 (329)
T PF15632_consen 159 RGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAAVPRRKL---GR 233 (329)
T ss_pred ceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEEEEEEec---Cc
Confidence 9999998 5556555443 11111111112368999999999 99999999985 788877554432 11
Q ss_pred ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHH
Q 009903 305 QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (523)
Q Consensus 305 ~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~ 384 (523)
...+ +..+++.+.+.++++.+|+.|.++|+|+.|.+|+|+|||||||++||..++.. +|+|+..+.++.
T Consensus 234 ~q~l----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p~LLEINpR~sGGi~~s~~-aGvNlp~la~~~ 302 (329)
T PF15632_consen 234 RQVL----------ENDEELIELARRLAEAFGLDGLFNIQFRYDEDGNPKLLEINPRPSGGIGYSCA-AGVNLPYLAVKL 302 (329)
T ss_pred eeEE----------EECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCEEEEEeCCCCccchhhHhh-cCCChHHHHHHH
Confidence 1111 12257889999999999999999999999999999999999999999777764 899999999999
Q ss_pred HcCCCCCCC
Q 009903 385 AMGGKLRYK 393 (523)
Q Consensus 385 ~~G~~~~~~ 393 (523)
++|++.+..
T Consensus 303 ~lG~~~~~~ 311 (329)
T PF15632_consen 303 ALGEPIPPP 311 (329)
T ss_pred HcCCCCCCc
Confidence 999987654
No 49
>PRK06849 hypothetical protein; Provisional
Probab=100.00 E-value=5e-33 Score=289.06 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=211.8
Q ss_pred ccEEEEEcCcH-HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 71 QEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 71 ~k~ILi~g~g~-~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
+|+|||+|++. .++.+++++++.|++|++++++.......++++|+++.++ .+..+.....+.++++++++++|+|+|
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p-~p~~d~~~~~~~L~~i~~~~~id~vIP 82 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIP-SPRWDPDAYIQALLSIVQRENIDLLIP 82 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeC-CCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 58999999876 6999999999999999999877655556678899988774 233333345789999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhc-CCcEEEEe
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKA 228 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~-g~P~VvKP 228 (523)
+.+.........+.++ .++.+++++.++++.+.||..++++++++|+|+|++ ..+.+.+++.++..+. +||+|+||
T Consensus 83 ~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t--~~v~~~~~l~~~~~~~~~~P~vlKP 159 (389)
T PRK06849 83 TCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKT--YLITDPEAIRNFMFKTPHTPYVLKP 159 (389)
T ss_pred CChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHhhcCCCCcEEEEe
Confidence 8752211111122222 246778899999999999999999999999999999 7789999998888776 99999999
Q ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceee
Q 009903 229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 308 (523)
Q Consensus 229 ~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~ 308 (523)
..|.+|.|+.++.+.+++.... . ....++|+||||+| .++++.++.. +|+++.................
T Consensus 160 ~~~~~~~~v~~~~~~~~l~~~~----~-----~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~~ 228 (389)
T PRK06849 160 IYSRFVRRVDLLPKEAALKELP----I-----SKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAHSCYKPEYCAGSGAQI 228 (389)
T ss_pred CcccCCCeEEEecCHHHhcccc----c-----CCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEEEEeeccccCCCCcee
Confidence 9999999999998855443211 0 01246999999999 8998888875 5677665332111001110011
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCcccee
Q 009903 309 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 370 (523)
Q Consensus 309 ~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~ 370 (523)
...+ . ..+++.+.+.++++++|+.|.+++||+++++|++|+||||||++++..+..
T Consensus 229 ~~~~---~---~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 229 AFQP---I---NHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred EeEE---C---CcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEcC
Confidence 1111 1 135788999999999999999999999998899999999999998877665
No 50
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=3.8e-33 Score=283.34 Aligned_cols=299 Identities=20% Similarity=0.252 Sum_probs=218.7
Q ss_pred CccEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHH
Q 009903 70 RQEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI 140 (523)
Q Consensus 70 ~~k~ILi~g~g~---------~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (523)
|+++|.|+-+|. +|..+++++.+.||+++.++.+.+..-.........+.- +.....+ .. +....+
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~ 76 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELAD-DDNDKED---LS-LLILPS 76 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhccc-ccccccc---cc-hhcccc
Confidence 356788886653 478999999999999999965543100000000000000 0000000 00 111111
Q ss_pred Hc--CCCEEEeC-CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHH----H
Q 009903 141 SR--GCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE----A 213 (523)
Q Consensus 141 ~~--~id~Vi~~-~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e----~ 213 (523)
.. ++|+|++. +|...|+..+..+++.+|+|++|++..+..++.||..++++|+++|||+|++ ..+.+.++ +
T Consensus 77 ~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~--~~~~~~~~~~~~~ 154 (333)
T PRK01966 77 GGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPY--VVLTRGDWEEASL 154 (333)
T ss_pred ccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCE--EEEeccccchhhH
Confidence 22 69999998 6778899899999999999999999999999999999999999999999998 45544433 3
Q ss_pred HHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEE
Q 009903 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (523)
Q Consensus 214 ~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~ 293 (523)
..+.+.++||+||||..+++|.||.+|++.+|+.++++.+... ++.+|||+||+| +|+++.++.+ ++.+...
T Consensus 155 ~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E~~v~vl~~-~~~~~~~ 226 (333)
T PRK01966 155 AEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-REIECAVLGN-DPKASVP 226 (333)
T ss_pred HHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EEEEEEEECC-CCeEccc
Confidence 5566789999999999999999999999999999999887543 378999999999 9999999986 3343333
Q ss_pred eeece--eeeecC-----ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCC-
Q 009903 294 GERDC--SIQRRN-----QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE- 365 (523)
Q Consensus 294 ~~~~~--~~~~~~-----~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~- 365 (523)
.+... .+.... .......|+. ++++..+++++++.+++++||+.|++++||+++++|++||+|||++||.+
T Consensus 227 ~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~ 305 (333)
T PRK01966 227 GEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFTP 305 (333)
T ss_pred EEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCCc
Confidence 32211 011110 1122345664 89999999999999999999999999999999988999999999999865
Q ss_pred ---ccceeeecCCCHHHHHHHH
Q 009903 366 ---HPVTEMISSVDLIEEQIHV 384 (523)
Q Consensus 366 ---~~~~~~~~Gidl~~~~~~~ 384 (523)
.+......|+|+.+.+-++
T Consensus 306 ~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 306 ISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred ccHHHHHHHHcCCCHHHHHHHH
Confidence 2334456899888876554
No 51
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=2.7e-32 Score=274.45 Aligned_cols=277 Identities=23% Similarity=0.329 Sum_probs=214.0
Q ss_pred CCccEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHH
Q 009903 69 CRQEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (523)
Q Consensus 69 ~~~k~ILi~g~g~---------~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~ 139 (523)
.|+++|.|+-+|. ++..++++++++|+++++++.+.+ +++.+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~-----------------------------~~~~~ 52 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------IAAQL 52 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc-----------------------------hHHHh
Confidence 4566888876553 368899999999999999843211 12233
Q ss_pred HHcCCCEEEeCC-CcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHH
Q 009903 140 ISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD 218 (523)
Q Consensus 140 ~~~~id~Vi~~~-g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~ 218 (523)
+..++|.|++.. +...++..+..+++.+|++++|++..++..+.||..++++|+++|||+|++ ..+.+.+++..+++
T Consensus 53 ~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~--~~~~~~~~~~~~~~ 130 (304)
T PRK01372 53 KELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPW--IVLTREEDLLAAID 130 (304)
T ss_pred ccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCE--EEEeCcchHHHHHh
Confidence 445799999863 344567778889999999999999999999999999999999999999999 77888888888899
Q ss_pred hcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeec-
Q 009903 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD- 297 (523)
Q Consensus 219 ~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~- 297 (523)
+++||+||||..|++|.|+.++++.+++.+++++.... ...+|+||||+| +|+++.++.+....++......
T Consensus 131 ~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~E~~v~vi~~~~~~~~~~~~~~~ 203 (304)
T PRK01372 131 KLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKY------DDEVLVEKYIKG-RELTVAVLGGKALPVIEIVPAGE 203 (304)
T ss_pred hcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEEcccCC-EEEEEEEECCCccceEEEEecCC
Confidence 99999999999999999999999999999988776322 378999999999 9999998865332222221110
Q ss_pred e-eeee-c-CceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCc----ccee
Q 009903 298 C-SIQR-R-NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTE 370 (523)
Q Consensus 298 ~-~~~~-~-~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~----~~~~ 370 (523)
. .+.. . ........|. .++++..+++.+++.++++++|+.|++++||+++++|++||+|+|+|++... +...
T Consensus 204 ~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~~~~~ 282 (304)
T PRK01372 204 FYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLVPMAA 282 (304)
T ss_pred EEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCCcccHHHHHH
Confidence 0 0000 0 1112233454 3888999999999999999999999999999999889999999999997541 2222
Q ss_pred eecCCCHHHHHHHH
Q 009903 371 MISSVDLIEEQIHV 384 (523)
Q Consensus 371 ~~~Gidl~~~~~~~ 384 (523)
...|+|+.+++..+
T Consensus 283 ~~~g~~~~~~~~~i 296 (304)
T PRK01372 283 RAAGISFSELVDRI 296 (304)
T ss_pred HHcCCCHHHHHHHH
Confidence 33588877666544
No 52
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=100.00 E-value=5.8e-32 Score=275.76 Aligned_cols=292 Identities=21% Similarity=0.236 Sum_probs=212.2
Q ss_pred ccEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCe-----------eEEcCCCCCCCCCC
Q 009903 71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE-----------SVCIGEAPSSQSYL 130 (523)
Q Consensus 71 ~k~ILi~g~g~---------~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~-----------~~~~~~~~~~~~~~ 130 (523)
+++|.|+-+|. +|..+++++.+.||+|+.++.+.+. .+. ..+. ...+.+ . .
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g--~~~-~~~~~~~~~~~~~~~~~~~~~--~---~- 73 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSG--VWK-LCDGPCAEWENGSCRPAVLSP--D---R- 73 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCC--cEE-eCCccccccccccccceeecc--c---c-
Confidence 56788876663 3789999999999999999654431 110 0000 000100 0 0
Q ss_pred CHHHHHHH----HHHcCCCEEEeC-CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCc
Q 009903 131 LIPNVLSA----AISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG 205 (523)
Q Consensus 131 ~~~~l~~~----~~~~~id~Vi~~-~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~ 205 (523)
....+... .+..++|.|++. +|...|+..+..+++.+|+|++|++..++..+.||..++++|+++|||+|++ .
T Consensus 74 ~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~--~ 151 (343)
T PRK14568 74 KVHGLLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAF--W 151 (343)
T ss_pred ccccccccCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCE--E
Confidence 00000000 123569999998 7878899999999999999999999999999999999999999999999998 5
Q ss_pred cCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEe
Q 009903 206 LLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285 (523)
Q Consensus 206 ~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d 285 (523)
.+.+.++.. .++++||+||||..+++|.||.++++.+||.++++.+... +..+|||+||+| +|+++.++.+
T Consensus 152 ~~~~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~sv~vl~~ 222 (343)
T PRK14568 152 TVTADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVVG-SEVGCAVLGN 222 (343)
T ss_pred EEECCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcCC-EEEEEEEEcC
Confidence 555544432 3578999999999999999999999999999999876543 378999999999 9999999976
Q ss_pred CCCcEEE-Eeeec--eeeeecC---------ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCE
Q 009903 286 KYGNVVH-FGERD--CSIQRRN---------QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSF 353 (523)
Q Consensus 286 ~~g~v~~-~~~~~--~~~~~~~---------~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~ 353 (523)
+.+.... ..... ..++... .......|+. ++++..+++.+++.+++++||+.|++++||+++++|++
T Consensus 223 ~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~ 301 (343)
T PRK14568 223 GADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTV 301 (343)
T ss_pred CCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCE
Confidence 4322111 11100 0111111 1112345665 89999999999999999999999999999999988999
Q ss_pred EEEEEecCCCCCc----cceeeecCCCHHHHHHH
Q 009903 354 YFMEMNTRIQVEH----PVTEMISSVDLIEEQIH 383 (523)
Q Consensus 354 ~liEiNpR~~g~~----~~~~~~~Gidl~~~~~~ 383 (523)
||+|||++||.+. +....+.|+++.+++-+
T Consensus 302 ~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 302 VLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 9999999997652 22224578876655443
No 53
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.4e-31 Score=273.20 Aligned_cols=302 Identities=19% Similarity=0.226 Sum_probs=212.5
Q ss_pred cEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCC----CHHHH--H
Q 009903 72 EKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYL----LIPNV--L 136 (523)
Q Consensus 72 k~ILi~g~g~---------~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~----~~~~l--~ 136 (523)
.+|.|+-+|. +|..+++++.+.||+++.++.+.+.........+..+..+......... ....+ .
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEP 81 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccccccccccccccccccc
Confidence 3677765553 3789999999999999888644431110001111111000000000000 00000 0
Q ss_pred HHHHHcCCCEEEeC-CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCC------C
Q 009903 137 SAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ------S 209 (523)
Q Consensus 137 ~~~~~~~id~Vi~~-~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~------s 209 (523)
.......+|.++++ +|...|++.+..+++.+|+|++|++..++..+.||..++++|+++|||+|++ ..+. +
T Consensus 82 ~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~--~~~~~~~~~~~ 159 (347)
T PRK14572 82 ADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPF--FELEKLKYLNS 159 (347)
T ss_pred ccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCE--EEEEccccccC
Confidence 11122458988887 6777799999999999999999999999999999999999999999999998 3432 3
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCC-C
Q 009903 210 TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY-G 288 (523)
Q Consensus 210 ~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~-g 288 (523)
.+++.+..++++||+||||..|++|.||.+|++.+||..+++.+... +..+||||||+| +|+++.++.+.. |
T Consensus 160 ~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~G-~E~sv~vi~~~~~g 232 (347)
T PRK14572 160 PRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLSG-TEVSCGVLERYRGG 232 (347)
T ss_pred hHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCccc-EEEEEEEEeCccCC
Confidence 44554556789999999999999999999999999999999887542 468999999999 999999997422 2
Q ss_pred --cEEEEeeeceeeee--------cC-ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEE
Q 009903 289 --NVVHFGERDCSIQR--------RN-QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFME 357 (523)
Q Consensus 289 --~v~~~~~~~~~~~~--------~~-~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liE 357 (523)
..+.+...+..... +. .......|+. ++++..+++.+++.+++++||+.|++++||++++ |++|++|
T Consensus 233 ~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~~~~vlE 310 (347)
T PRK14572 233 KRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVD-GEPHILE 310 (347)
T ss_pred CCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEEC-CcEEEEe
Confidence 23333222211100 00 1122345665 8999999999999999999999999999999985 5699999
Q ss_pred EecCCCCCc----cceeeecCCCHHHHHHHH
Q 009903 358 MNTRIQVEH----PVTEMISSVDLIEEQIHV 384 (523)
Q Consensus 358 iNpR~~g~~----~~~~~~~Gidl~~~~~~~ 384 (523)
||++||.+. +......|+++.+++-++
T Consensus 311 iNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 311 TNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred eeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 999997652 333345788887776554
No 54
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=100.00 E-value=1.2e-31 Score=271.15 Aligned_cols=275 Identities=22% Similarity=0.344 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHH-HHHH-HHHcCCCEEEeC-CCcccccH
Q 009903 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPN-VLSA-AISRGCTMLHPG-YGFLAENA 158 (523)
Q Consensus 82 ~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~-l~~~-~~~~~id~Vi~~-~g~~~e~~ 158 (523)
++..++++++++|+++++++.+.+.. . . +.+... +... ....++|+|++. ++...++.
T Consensus 19 s~~~i~~al~~~g~~v~~i~~~~~~~--~---------~--------~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~ 79 (315)
T TIGR01205 19 SAAAVLKALRDLGYDVYPVDIDKMGS--W---------T--------YKDLPQLILELGALLEGIDVVFPVLHGRYGEDG 79 (315)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCCcc--c---------c--------ccchHHHHhhccccCCCCCEEEEecCCCCCCCc
Confidence 37889999999999999996543221 1 0 111111 1111 112569999986 44445677
Q ss_pred HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCC-CHHHH-----HHHHHhcCCcEEEEeCCCC
Q 009903 159 VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ-STEEA-----VKLADELGFPVMIKATAGG 232 (523)
Q Consensus 159 ~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~-s~~e~-----~~~~~~~g~P~VvKP~~g~ 232 (523)
.+..+++.+|+|++|+++.++..+.||..++++|+++|||+|++ ..+. +.++. ..+.+.++||+||||..++
T Consensus 80 ~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~ 157 (315)
T TIGR01205 80 TIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDY--IVLTQNRASADELECEQVAEPLGFPVIVKPAREG 157 (315)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCE--EEEecccccchhhhHHHHHHhcCCCEEEEeCCCC
Confidence 88899999999999999999999999999999999999999998 5455 43322 2344678999999999999
Q ss_pred CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcE-EEEeeeceeee----ecC-ce
Q 009903 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV-VHFGERDCSIQ----RRN-QK 306 (523)
Q Consensus 233 gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v-~~~~~~~~~~~----~~~-~~ 306 (523)
+|.||.++++.+++.++++.+... ...+|+|+||+| +|+++.++.++++.. +........+. ... ..
T Consensus 158 ~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (315)
T TIGR01205 158 SSVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIKG-RELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGS 230 (315)
T ss_pred CccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCCC-EEEEEEEECCCCccceEEecCCCCCeeCcccccCCCC
Confidence 999999999999999998876532 368999999999 999999998543222 22111110010 000 11
Q ss_pred eeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCc----cceeeecCCCHHHHHH
Q 009903 307 LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQI 382 (523)
Q Consensus 307 ~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~----~~~~~~~Gidl~~~~~ 382 (523)
.....|+. ++++..+++.+.+.+++++||+.|++++||+++++|++||+|||||++... +......|+|+.+++.
T Consensus 231 ~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~ 309 (315)
T TIGR01205 231 TEYVIPAP-LDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVE 309 (315)
T ss_pred eeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHH
Confidence 22234554 899999999999999999999999999999999888899999999986542 2233457888888776
Q ss_pred HHH
Q 009903 383 HVA 385 (523)
Q Consensus 383 ~~~ 385 (523)
.+.
T Consensus 310 ~ii 312 (315)
T TIGR01205 310 RIL 312 (315)
T ss_pred HHH
Confidence 653
No 55
>PRK06524 biotin carboxylase-like protein; Validated
Probab=100.00 E-value=3.2e-31 Score=273.09 Aligned_cols=253 Identities=19% Similarity=0.254 Sum_probs=202.2
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHH
Q 009903 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213 (523)
Q Consensus 134 ~l~~~~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~ 213 (523)
++++++++.+...... |+++++.++.+++.+|++++||+.+++..+.||..++++++++|||+|+++.....+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~---fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel 171 (493)
T PRK06524 95 ETLEFIKRRGPGGKAC---FVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDEL 171 (493)
T ss_pred HHHHHHHhhCCCCceE---EecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHH
Confidence 3455566655533222 5668999999999999999999999999999999999999999999999943225677777
Q ss_pred HHHHHh--cCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEE
Q 009903 214 VKLADE--LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV 291 (523)
Q Consensus 214 ~~~~~~--~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~ 291 (523)
.+.+++ +||||||||..|++|+|+++|++.+|+..+++.+. +...++||+||.| .|++|+++.+.+|.++
T Consensus 172 ~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-------~~~~viVEe~I~G-rEitVev~vd~dG~Vv 243 (493)
T PRK06524 172 SALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-------GQPEIKVMKRIRN-VEVCIEACVTRHGTVI 243 (493)
T ss_pred HHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-------CCCCEEEEeccCc-EEEEEEEEEeCCCCEE
Confidence 777765 99999999999999999999999999999877642 2367999999999 9999999998887765
Q ss_pred EEeee------ceeeeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHc---CCccccEEEEEEeC-CCCEEEEEEecC
Q 009903 292 HFGER------DCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI---GYIGVGTVEFLLDE-RGSFYFMEMNTR 361 (523)
Q Consensus 292 ~~~~~------~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~al---g~~G~~~vE~~~~~-~G~~~liEiNpR 361 (523)
..... +.............+|+. ++++..+++.+++.++.++| |+.|+++|||+++. +|++||+|||||
T Consensus 244 ~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINPR 322 (493)
T PRK06524 244 GPAMTSLVGYPELTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNPR 322 (493)
T ss_pred eccccccccceEEEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeCC
Confidence 42111 111112122223456775 99999999999999999998 88999999999994 578999999999
Q ss_pred CCCCccceeee----cCCCHHHHHHHHHcCCCCCCCccccc
Q 009903 362 IQVEHPVTEMI----SSVDLIEEQIHVAMGGKLRYKQEDIV 398 (523)
Q Consensus 362 ~~g~~~~~~~~----~Gidl~~~~~~~~~G~~~~~~~~~~~ 398 (523)
++|+++++.++ .+.+++..+++..+|.+.++....+.
T Consensus 323 ~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~~~~~~~ 363 (493)
T PRK06524 323 LSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYELDIEEIN 363 (493)
T ss_pred cccccccchhhhccCCChhHHHHHHHHHhCCCceecHHHHH
Confidence 99988776652 56788889999999999877654443
No 56
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=4.9e-31 Score=269.24 Aligned_cols=302 Identities=16% Similarity=0.179 Sum_probs=214.7
Q ss_pred CccEEEEEcCcH---------HHHHHHHHH-HHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCC------HH
Q 009903 70 RQEKILVANRGE---------IAVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL------IP 133 (523)
Q Consensus 70 ~~k~ILi~g~g~---------~~~~vi~aa-~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~------~~ 133 (523)
|+++|.|+-+|. +|..+++++ .+.+|+|+.++.+.+. ..+.. .+.....+.....+.... ..
T Consensus 1 ~~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T PRK14570 1 MKKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCT-GIWYL-LDSVPDPPKLIKRDVLPIVSLIPGCG 78 (364)
T ss_pred CCcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCC-CeEEe-cCcccccccccccccccccccccccc
Confidence 467888887764 378899998 6789999888654431 11110 100000000000000000 00
Q ss_pred HHHHHHHHcCCCEEEeC-CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCC----
Q 009903 134 NVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ---- 208 (523)
Q Consensus 134 ~l~~~~~~~~id~Vi~~-~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~---- 208 (523)
.+.. .+..++|.|++. +|...|++.+..+++.+|+|++|++..++.++.||..++++|+++|||+|++ ..+.
T Consensus 79 ~~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~--~~~~~~~~ 155 (364)
T PRK14570 79 IFVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPF--IGFRKYDY 155 (364)
T ss_pred cccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCE--EEEecccc
Confidence 0110 122358999997 7778899999999999999999999999999999999999999999999997 3332
Q ss_pred --CHHHHHH-HHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEe
Q 009903 209 --STEEAVK-LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285 (523)
Q Consensus 209 --s~~e~~~-~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d 285 (523)
+.+++.+ +.+++|||+||||..+++|.|+.++++.+|+.++++.+... ++.+|||+||+| +|+++.++.+
T Consensus 156 ~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~G-rEi~v~Vlg~ 228 (364)
T PRK14570 156 FLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIEA-REIECSVIGN 228 (364)
T ss_pred ccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcCC-EEEEEEEECC
Confidence 3455543 34679999999999999999999999999999999987643 367999999999 9999999976
Q ss_pred CCCcEEEEeeece---eeee----c----CceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC-CCCE
Q 009903 286 KYGNVVHFGERDC---SIQR----R----NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSF 353 (523)
Q Consensus 286 ~~g~v~~~~~~~~---~~~~----~----~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~-~G~~ 353 (523)
....+....+... .+.. + .......+|+. ++++..+++++++.++.++||++|++++||++++ +|++
T Consensus 229 ~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~ 307 (364)
T PRK14570 229 EQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLI 307 (364)
T ss_pred CCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcE
Confidence 4433333333211 0111 0 11112345765 9999999999999999999999999999999995 5889
Q ss_pred EEEEEecCCCCCc----cceeeecCCCHHHHHHHH
Q 009903 354 YFMEMNTRIQVEH----PVTEMISSVDLIEEQIHV 384 (523)
Q Consensus 354 ~liEiNpR~~g~~----~~~~~~~Gidl~~~~~~~ 384 (523)
||+|||++||.+. +......|+++.+++-++
T Consensus 308 yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 342 (364)
T PRK14570 308 YLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNL 342 (364)
T ss_pred EEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999999998652 223334788876655443
No 57
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=1.2e-29 Score=254.33 Aligned_cols=256 Identities=20% Similarity=0.301 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-CCcccccHHH
Q 009903 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVF 160 (523)
Q Consensus 82 ~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~-~g~~~e~~~~ 160 (523)
++..+++++++.|++++.++.+.+ + + .. +.+..++|.|++. +|...++..+
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~-------~------~------------~~---~~~~~~~D~v~~~~~g~~ge~~~~ 71 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDED-------F------L------------KK---VDQLKSFDVVFNVLHGTFGEDGTL 71 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCch-------H------H------------HH---hhhccCCCEEEEeCCCCCCCccHH
Confidence 378999999999999999953211 0 0 01 1112458999887 5555677888
Q ss_pred HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEe
Q 009903 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLA 240 (523)
Q Consensus 161 a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v 240 (523)
..+++.+|+|++|+++.++..+.||..++++|+ .|+|+|++ ..+.+.. ..+.++||+||||..|++|.||.++
T Consensus 72 ~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~--~~~~~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v 144 (299)
T PRK14571 72 QAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDF--VEIKEFM----KTSPLGYPCVVKPRREGSSIGVFIC 144 (299)
T ss_pred HHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCE--EEEechh----hhhhcCCCEEEecCCCCCcCCEEEE
Confidence 899999999999999999999999999999998 58999998 5554432 2356899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCc-EEEEeeecee--eee----c-CceeeEecC
Q 009903 241 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN-VVHFGERDCS--IQR----R-NQKLLEEAP 312 (523)
Q Consensus 241 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~-v~~~~~~~~~--~~~----~-~~~~~~~~p 312 (523)
+|.+|+.++++..... ...+||||||+| +|+++.++.++.+. +..+.+.... +.. . ........|
T Consensus 145 ~~~~el~~~~~~~~~~------~~~vlVEeyI~G-~E~sv~vl~~~~~~~vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p 217 (299)
T PRK14571 145 ESDEEFQHALKEDLPR------YGSVIVQEYIPG-REMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILP 217 (299)
T ss_pred CCHHHHHHHHHHHHhh------CCcEEEEccccc-eEEEEEEEcCCCCeeeeceEEEecCCCccccccccCCCCeeEEeC
Confidence 9999999988765432 367999999999 99999999874422 2222221100 000 0 011112346
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCc----cceeeecCCCHHHHH
Q 009903 313 SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQ 381 (523)
Q Consensus 313 ~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~----~~~~~~~Gidl~~~~ 381 (523)
+. ++++..+++.+.+.+++++||+.|++++||++++ |++||+|||++|+... +......|+++.+++
T Consensus 218 ~~-l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~-~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li 288 (299)
T PRK14571 218 AP-LNPEEERLVKETALKAFVEAGCRGFGRVDGIFSD-GRFYFLEINTVPGLTELSDLPASAKAGGIEFEELV 288 (299)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEC-CcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHH
Confidence 54 8999999999999999999999999999999985 5699999999997652 222234788877743
No 58
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.97 E-value=1e-28 Score=278.34 Aligned_cols=300 Identities=17% Similarity=0.167 Sum_probs=216.3
Q ss_pred CccEEEEEcCcH---------HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHH
Q 009903 70 RQEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI 140 (523)
Q Consensus 70 ~~k~ILi~g~g~---------~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (523)
++++|.|+-+|. +|..+++++.+.||+|+.++.+.+. .+..................+ . ..+.. .
T Consensus 450 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g--~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~ 523 (809)
T PRK14573 450 KKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQG--LWETVSSLETAIEEDSGKSVL-S-SEIAQ--A 523 (809)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCC--eEEeccccccccccccccccc-c-hhhhh--c
Confidence 456788876664 3789999999999999988644321 111110000000000000001 0 01111 1
Q ss_pred HcCCCEEEeC-CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCC------H-HH
Q 009903 141 SRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS------T-EE 212 (523)
Q Consensus 141 ~~~id~Vi~~-~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s------~-~e 212 (523)
..++|.|++. +|...|++.+..+++.+|+|++|++..+...+.||..+|++|+++|||+|++ ..+.. . +.
T Consensus 524 ~~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~--~~~~~~~~~~~~~~~ 601 (809)
T PRK14573 524 LAKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPY--QPLTLAGWKREPELC 601 (809)
T ss_pred cccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCE--EEEechhcccChHHH
Confidence 1468999998 6777899999999999999999999999999999999999999999999998 44432 2 23
Q ss_pred HHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEE
Q 009903 213 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292 (523)
Q Consensus 213 ~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~ 292 (523)
+.++.++++||+||||..+++|.|+.+|++.+|+.++++.+... +.++||||||.|++|+++.++.++.+..+.
T Consensus 602 ~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~~~~ 675 (809)
T PRK14573 602 LAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSAYVI 675 (809)
T ss_pred HHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCceEe
Confidence 45667889999999999999999999999999999999887543 478999999877699999999986543322
Q ss_pred E--eeece--eeeecC--------ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEec
Q 009903 293 F--GERDC--SIQRRN--------QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNT 360 (523)
Q Consensus 293 ~--~~~~~--~~~~~~--------~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNp 360 (523)
. .+... .+..+. .......|+. +++++.+++++++.++.++||+.|+++|||+++++|++||+||||
T Consensus 676 ~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt 754 (809)
T PRK14573 676 AGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNP 754 (809)
T ss_pred ccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeC
Confidence 1 11111 011110 0011124554 999999999999999999999999999999999889999999999
Q ss_pred CCCCCc----cceeeecCCCHHHHHHHH
Q 009903 361 RIQVEH----PVTEMISSVDLIEEQIHV 384 (523)
Q Consensus 361 R~~g~~----~~~~~~~Gidl~~~~~~~ 384 (523)
|||.+. +......|+++.+++-++
T Consensus 755 ~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 755 IPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 998652 333335788876655443
No 59
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.97 E-value=2.6e-28 Score=232.00 Aligned_cols=351 Identities=20% Similarity=0.235 Sum_probs=241.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCC--CCCHHHHHHHHHHcC--CCE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQS--YLLIPNVLSAAISRG--CTM 146 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~--~~~~~~l~~~~~~~~--id~ 146 (523)
+-+||++|-. .+.+..+|.++||+|+.++...+.+-. ..++.+++..+...... ..|.+.|++.+.+.. +|+
T Consensus 11 ~~kiLviGvn--tR~vveSA~klGf~V~sv~~y~~~Dl~--~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~ 86 (389)
T COG2232 11 SCKILVIGVN--TRPVVESASKLGFEVYSVQYYDPADLP--GDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDA 86 (389)
T ss_pred cceEEEEeec--chHhHHHHHhcCeEEEEeEeecccccc--cccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcce
Confidence 4579999765 788999999999999999644333332 45555665543333332 456778888776644 677
Q ss_pred -EEeCCCcccccHHHHHHHHHcCCceeCCCHH-HHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcE
Q 009903 147 -LHPGYGFLAENAVFVEMCREHGINFIGPNPD-SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224 (523)
Q Consensus 147 -Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~-~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~ 224 (523)
++++.++... ..--..+.++.|++++ ....+.||..+.+.+..+|+|.|+.+ .. +. ...--+++
T Consensus 87 ~ii~~sg~e~l-----~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~--~~---e~----~~~gekt~ 152 (389)
T COG2232 87 PIIPFSGFEAL-----RTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK--KI---EP----LEEGEKTL 152 (389)
T ss_pred eeeeccccccc-----cccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--hh---hh----hhhcceee
Confidence 6666655222 2223456778899998 89999999999999999999999862 22 11 12223689
Q ss_pred EEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeee-ec
Q 009903 225 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-RR 303 (523)
Q Consensus 225 VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~-~~ 303 (523)
|+||+.|+||. +.++.-.++.. ..++|+|+||+| ..+|++++.++. ....+...+..+. ..
T Consensus 153 IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~-~a~~la~N~QiI~~~~ 214 (389)
T COG2232 153 ILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGS-DALTLAVNDQIIDGLR 214 (389)
T ss_pred EEeeccCCCce-eeecccccccC---------------CcceehhhhcCC-ceeEEEEEecCc-ceEEEEEeeeeecccc
Confidence 99999999985 33332222211 168999999999 999999999976 5555544332222 11
Q ss_pred C---c--eeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHH
Q 009903 304 N---Q--KLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLI 378 (523)
Q Consensus 304 ~---~--~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~ 378 (523)
. + ..+...|.+ ..+. +++.+++..++..||+.|..+|||++++.| ||+||||||++|+...+++++|+|++
T Consensus 215 ~~~~~f~Y~GNlTP~~--~~~~-ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giNl~ 290 (389)
T COG2232 215 GEYSQFVYKGNLTPFP--YEEV-EEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGINLF 290 (389)
T ss_pred cccccceeccCcCCCc--chhh-HHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCCHH
Confidence 1 1 112233443 3333 889999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEE
Q 009903 379 EEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKL 458 (523)
Q Consensus 379 ~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~v 458 (523)
+++++++.|+-+ . .+...++++...+|+.... .+..+.. ..++ --..+|..+..+ .+ +..|
T Consensus 291 ~lHi~af~G~Lp-E---r~kpr~~a~krILyap~~v--------~v~~l~~---~~~~--DiP~~Gtviekg-eP-l~sv 351 (389)
T COG2232 291 RLHIQAFDGELP-E---RPKPRGYACKRILYAPRTV--------RVPILKL---SWTH--DIPRPGTVIEKG-EP-LCSV 351 (389)
T ss_pred HHHHHHhcCcCc-C---CCCcceeEEeEEEecccee--------ecccccc---cccc--cCCCCCcccCCC-Cc-eeee
Confidence 999999999833 2 2345677777777764211 1111100 1111 011234444332 23 8899
Q ss_pred EEEcCCHHHHHHHHHHHhhcCe
Q 009903 459 IVWAPTREKAIERMKRALNDTI 480 (523)
Q Consensus 459 i~~g~s~~ea~~~~~~~~~~i~ 480 (523)
++.+.+++.|...+++.++.+.
T Consensus 352 iA~~nt~~~a~~~~er~~ervk 373 (389)
T COG2232 352 IASSNTRSGAESMAERLAERVK 373 (389)
T ss_pred eeccCCHHHHHHHHHHHHHHHH
Confidence 9999999999998888777543
No 60
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=256.91 Aligned_cols=307 Identities=17% Similarity=0.231 Sum_probs=265.0
Q ss_pred ccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHH
Q 009903 71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA 139 (523)
Q Consensus 71 ~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~ 139 (523)
.+.++|+|+|.. +...++.++++|++++.++.+++..+.....||+.|.- ....+.++++-
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFe--------eis~E~vmDiY 989 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFE--------EISYERVMDIY 989 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhHh--------hhhhhhhhhhh
Confidence 457999998853 67889999999999999999999999899999998852 56788999998
Q ss_pred HHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHh
Q 009903 140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (523)
Q Consensus 140 ~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~ 219 (523)
..++..+|+...|--.. -.++--+.+.|++++|.+++.+..+.|+.++.+.|.+.|+..|++ ...++.+++.+|+++
T Consensus 990 e~E~~~G~iis~GGQ~p-nNiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~W--kelt~~~eA~~F~~~ 1066 (1435)
T KOG0370|consen 990 ELENSEGIIISVGGQLP-NNIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAW--KELTSLEEAKKFAEK 1066 (1435)
T ss_pred hhccCCceEEEecCcCc-chhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhh--hhhccHHHHHHHHHh
Confidence 88889888876543212 245667888999999999999999999999999999999999998 889999999999999
Q ss_pred cCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeec--
Q 009903 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-- 297 (523)
Q Consensus 220 ~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~-- 297 (523)
.||||+|.|.+--+|.-+.++++.+||+..++++..-+ .++++++.+||+|.+|+.++.+.. +|+++.....+
T Consensus 1067 VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVisKfie~AkEidvDAVa~-~G~~~~haiSEHv 1141 (1435)
T KOG0370|consen 1067 VGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVISKFIEGAKEIDVDAVAS-DGKVLVHAISEHV 1141 (1435)
T ss_pred cCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcC----CCCCEEhHHhhcccceechhhhcc-CCeEEEEehhhhh
Confidence 99999999999999999999999999999999886655 468999999999999999999875 56766654432
Q ss_pred eeeeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCH
Q 009903 298 CSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDL 377 (523)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl 377 (523)
..-..+..+.....|+..++++..+++.+++.++++++.+.|+++++|+..++. +.+||||-|.+.++|++.+..|+|+
T Consensus 1142 EnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~n~-lkVIECN~RaSRSFPFvSKtlgvdf 1220 (1435)
T KOG0370|consen 1142 ENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKDNE-LKVIECNVRASRSFPFVSKTLGVDF 1220 (1435)
T ss_pred hcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCe-EEEEEeeeeeeccccceehhcCchH
Confidence 122233334444568888999999999999999999999999999999997765 9999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCc
Q 009903 378 IEEQIHVAMGGKLRYKQ 394 (523)
Q Consensus 378 ~~~~~~~~~G~~~~~~~ 394 (523)
.+...++.+|.++++..
T Consensus 1221 i~~At~~i~g~~~~~~~ 1237 (1435)
T KOG0370|consen 1221 IALATRAIMGVPVPPDL 1237 (1435)
T ss_pred HHHHHHHHhCCCCCCcc
Confidence 99999999998876655
No 61
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.96 E-value=5.7e-26 Score=229.39 Aligned_cols=406 Identities=18% Similarity=0.188 Sum_probs=276.6
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcC-CcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G-~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
|+.+|||+|+|.--..++..+++.- +.-+.+-+...-.+ ..-+.....++ -+..|++++.++|+++++..|+
T Consensus 1 ~~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a--~~~~~~~~~~d-----I~~~d~~ala~f~~e~~I~lVv 73 (788)
T KOG0237|consen 1 ERVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTA--SGDASKVPNLD-----ISVADFEALASFCKEHNINLVV 73 (788)
T ss_pred CceEEEEEcCCchHhHHHHHhhcCCccceEEEccCCCCcc--cCccccCcccc-----cChhhHHHHHHHHHHcceeEEE
Confidence 4568999999977777888887763 33333422211111 11111111111 1255899999999999999999
Q ss_pred eCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCC-cEEEE
Q 009903 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-PVMIK 227 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~-P~VvK 227 (523)
++.+... ...++..+.+.|++++||+.+++++..+|..++++|.++|||+..| ..+++.+++..|.+..+| ++|||
T Consensus 74 vGPE~PL-~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y--~~ft~~e~a~sfi~~~~~~~~ViK 150 (788)
T KOG0237|consen 74 VGPELPL-VAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKY--KTFTDPEEAKSFIQSATDKALVIK 150 (788)
T ss_pred ECCchhh-hhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCccee--eeeCCHHHHHHHHHhCCCcceEEe
Confidence 9874211 1356788899999999999999999999999999999999999999 889999999999999995 68999
Q ss_pred eCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeee-ce------ee
Q 009903 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DC------SI 300 (523)
Q Consensus 228 P~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~-~~------~~ 300 (523)
...-+.|+||.+..+.+|..++++.+............++|||+++| +|+|+-.+.|+. .+..+... +. ..
T Consensus 151 AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laftDG~-s~~~mp~aQDHKRl~dgD~ 228 (788)
T KOG0237|consen 151 ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAFTDGY-SVRPLPPAQDHKRLGDGDT 228 (788)
T ss_pred ecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEEecCc-ccccCCcccchhhhcCCCC
Confidence 99999999999999999999999987655433223579999999999 999999999976 44444221 10 11
Q ss_pred eecCceeeEecCCCCCCHHHHHHHHHHH-HHHH---HHcC--CccccEEEEEEeCCCCEEEEEEecCCCCC-ccceeeec
Q 009903 301 QRRNQKLLEEAPSPALTPELRKAMGDAA-VAAA---ASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMIS 373 (523)
Q Consensus 301 ~~~~~~~~~~~p~~~l~~~~~~~l~~~a-~~~~---~alg--~~G~~~vE~~~~~~G~~~liEiNpR~~g~-~~~~~~~~ 373 (523)
..+......++|+|-.++++.+.+.+.. ++.+ +.-| |.|+.-.-++++++| |.+||.|.|+|-- ...+....
T Consensus 229 GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~-P~vLEfN~RFGDPEtQv~l~lL 307 (788)
T KOG0237|consen 229 GPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG-PKVLEFNVRFGDPETQVLLPLL 307 (788)
T ss_pred CCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC-ccEEEEecccCCchhhhhHHHH
Confidence 2222334557898878887776655433 3333 3334 459999999999999 9999999999432 22333345
Q ss_pred CCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEE---eeeecCCcccCCC
Q 009903 374 SVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRM---DSHVYPDYVVPPS 450 (523)
Q Consensus 374 Gidl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~---~~~~~~G~~v~~~ 450 (523)
.-||++.++..+-|. +.-. ++.+...+++..+.+...+.+-......|..+.....+..++ .+.++.+. +-.+
T Consensus 308 esDL~evi~a~~~~~-L~~~--~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss~-vvTN 383 (788)
T KOG0237|consen 308 ESDLAEVILACCNGR-LDTV--DIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSSN-VVTN 383 (788)
T ss_pred HhHHHHHHHHHhhCC-cccc--CccccccceEEEEEecCCCCCCCcCCcccccCcccCCCcceEEeccccccccc-eEec
Confidence 669999888777665 3322 233333333333333221111111112344454444445554 22223332 2223
Q ss_pred CCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeecccCHHHHHH
Q 009903 451 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKL 493 (523)
Q Consensus 451 ~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~~~~~~~~ 493 (523)
.+|+=.|...++|.++|.+.++++.+.|.++|-++.-+.-.+
T Consensus 384 -GGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~r 425 (788)
T KOG0237|consen 384 -GGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAWR 425 (788)
T ss_pred -CceEEEEEecCchHHHHHHHHHHHheEEeeccccccchhhhh
Confidence 334668999999999999999999999999997765444433
No 62
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.96 E-value=7.7e-29 Score=260.22 Aligned_cols=384 Identities=18% Similarity=0.265 Sum_probs=310.9
Q ss_pred CCCccEEEEEcCcHH-----------HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHH
Q 009903 68 TCRQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVL 136 (523)
Q Consensus 68 ~~~~k~ILi~g~g~~-----------~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~ 136 (523)
..+.+++||+|+|.. |.+.++++++.|+.+++++++.........+||+.+.+ ..+.+.+-
T Consensus 374 ~~~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyfl--------pvT~~~vt 445 (1435)
T KOG0370|consen 374 RVEVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFL--------PVTPEYVT 445 (1435)
T ss_pred cccccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEe--------ecCHHHHH
Confidence 345789999998753 78999999999999999988777777888899999998 46777888
Q ss_pred HHHHHcCCCEEEeCCCccccc---HHH--HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHH
Q 009903 137 SAAISRGCTMLHPGYGFLAEN---AVF--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE 211 (523)
Q Consensus 137 ~~~~~~~id~Vi~~~g~~~e~---~~~--a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~ 211 (523)
...+...+|+|+.++|.-... ... .-.+++.+++++|.+.+++....|+..+.+.|.+.+.++.++ ..+++.+
T Consensus 446 ~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s--~a~~sie 523 (1435)
T KOG0370|consen 446 KVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPS--EAVSTIE 523 (1435)
T ss_pred HHHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccch--hhHhHHH
Confidence 888889999999887632211 122 236788999999999999999999999999999999999999 7899999
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEE
Q 009903 212 EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV 291 (523)
Q Consensus 212 e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~ 291 (523)
++.++++++|||+++...+.-||.|--.+++.++|.+...+..+.+ .+++||+-+.|++|++.++++|..++++
T Consensus 524 ~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~s------~QilvekSlkGwkevEyevvrDa~~nci 597 (1435)
T KOG0370|consen 524 EALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALALS------PQILVEKSLKGWKEVEYEVVRDAYDNCI 597 (1435)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhccccC------ceeeehhhhccccceEEEEEeccccchh
Confidence 9999999999999999999999999999999999999888776653 8999999999999999999999888888
Q ss_pred EEeeec--eeeeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCC-CCEEEEEEecCCCCCccc
Q 009903 292 HFGERD--CSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHPV 368 (523)
Q Consensus 292 ~~~~~~--~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~-G~~~liEiNpR~~g~~~~ 368 (523)
.+..-+ -....+..+.....|+++++++..+.++..+.++.+.||..|-+++++.+++. -+.++||+|+|++.+..+
T Consensus 598 Tvcnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssaL 677 (1435)
T KOG0370|consen 598 TVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSAL 677 (1435)
T ss_pred hhcCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehhhh
Confidence 774433 23344556677778999999999999999999999999999999999999955 368999999999988999
Q ss_pred eeeecCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccC
Q 009903 369 TEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVP 448 (523)
Q Consensus 369 ~~~~~Gidl~~~~~~~~~G~~~~~~~~~~~~~~~ai~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~ 448 (523)
..++||.+|.....++++|.+++..+- ...+... .-|.|+.+.+.... |.|.--++ .+...++.
T Consensus 678 ASkaTgypLAy~aAKlalg~~lpe~~n--~Vt~~T~----------AcFEpslDY~v~Ki-prWDl~kf---~~vs~~ig 741 (1435)
T KOG0370|consen 678 ASKATGYPLAYTAAKLALGIPLPELKN--SVTKTTT----------ACFEPSLDYCVVKI-PRWDLSKF---QRVSTEIG 741 (1435)
T ss_pred hccCccCcHHHHHHHHhcCcccccCCc--cccccee----------cccCcchhheeeec-ccccHHHH---HHHHHhhc
Confidence 999999999999999999998876543 2222211 23567666544432 22221111 11123344
Q ss_pred CCCCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeecc
Q 009903 449 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 485 (523)
Q Consensus 449 ~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~ 485 (523)
..+.+ .|.|+..|+++|||.+|+.+.++. .+.|+.
T Consensus 742 ssmKS-vgEvm~iGR~feea~QKalr~vd~-~~~Gf~ 776 (1435)
T KOG0370|consen 742 SSMKS-VGEVMAIGRTFEEAFQKALRMVDP-SLLGFM 776 (1435)
T ss_pred hhhhh-hhhhhhhhhhHHHHHHHHHhhcCh-hhcCcc
Confidence 44455 899999999999999999999886 334443
No 63
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=232.11 Aligned_cols=276 Identities=19% Similarity=0.173 Sum_probs=197.6
Q ss_pred EEEEEcC---cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 73 KILVANR---GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 73 ~ILi~g~---g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
+++|++. ..++..++++++++|+++..++........... .+..++ .. ....++|+|++
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~-~~~~~~----------~~-------~~~~~~d~v~~ 63 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA-ASSIHY----------KG-------RKLPHFDAVIP 63 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCCC-cccEEE----------CC-------cccCCCCEEEE
Confidence 4777772 356889999999999999999533211010000 111111 00 01136899998
Q ss_pred CCCcc-ccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhc-CCcEEE
Q 009903 150 GYGFL-AEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMI 226 (523)
Q Consensus 150 ~~g~~-~e~-~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~-g~P~Vv 226 (523)
..+.. ... ...+..++.+|. ++++++.++..+.||..++++|+++|+|+|++ ..+.+.+++.++++++ +||+||
T Consensus 64 ~~~~~~~~~~~~~~~~le~~g~-~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t--~~~~~~~~~~~~~~~~~~~P~Vv 140 (300)
T PRK10446 64 RIGTAITFYGTAALRQFEMLGS-YPLNESVAIARARDKLRSMQLLARQGIDLPVT--GIAHSPDDTSDLIDMVGGAPLVV 140 (300)
T ss_pred cCCCchhhHHHHHHHHHHHCCC-ceecCHHHHHhhhcHHHHHHHHHHcCCCCCCE--EEeCCHHHHHHHHHHhCCCCEEE
Confidence 64321 111 234678899994 45789999999999999999999999999998 6678888888888887 799999
Q ss_pred EeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeecc---CCCcEEEEEEEEeCCCcEEEEeeeceee--e
Q 009903 227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV---QNPRHIEFQVLADKYGNVVHFGERDCSI--Q 301 (523)
Q Consensus 227 KP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI---~G~~e~sv~v~~d~~g~v~~~~~~~~~~--~ 301 (523)
||..|++|.||+++++.+++..+++.+... +..+++|||| .| .++.+.++. ++++....+.... +
T Consensus 141 KP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g-~d~rv~vig---~~~~~~~~r~~~~~~~ 210 (300)
T PRK10446 141 KLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQG-CDIRCLVVG---DEVVAAIERRAKEGDF 210 (300)
T ss_pred EECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCC-ceEEEEEEC---CEEEEEEEEecCCCch
Confidence 999999999999999999998888765332 3679999999 46 888888773 2555544432211 1
Q ss_pred ecCceee-EecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHH
Q 009903 302 RRNQKLL-EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEE 380 (523)
Q Consensus 302 ~~~~~~~-~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~ 380 (523)
..+.... ...+. .++ +++.+.+.++++++|+. +.+|||+++++| +||+|||++++ ...++.++|+|+.+.
T Consensus 211 ~~n~~~g~~~~~~-~l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg--~~~~~~~~g~~~~~~ 281 (300)
T PRK10446 211 RSNLHRGGAASVA-SIT----PQEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPG--LEGIEKTTGIDIAGK 281 (300)
T ss_pred hheeccCCeeccC-CCC----HHHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCC--hhhhHHHHCcCHHHH
Confidence 1111111 11122 243 45779999999999996 999999999888 99999999984 345667799999999
Q ss_pred HHHHHcCC
Q 009903 381 QIHVAMGG 388 (523)
Q Consensus 381 ~~~~~~G~ 388 (523)
+++.....
T Consensus 282 ~~~~i~~~ 289 (300)
T PRK10446 282 MIRWIERH 289 (300)
T ss_pred HHHHHHHh
Confidence 99887654
No 64
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.95 E-value=5.9e-26 Score=228.82 Aligned_cols=270 Identities=17% Similarity=0.241 Sum_probs=191.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCC-CCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK-DALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~-~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
+|..+| +.+++.+++.|+++|++++++...... ....+.++|+++.++. ..+..+.+.+.++.+. ++++..+
T Consensus 20 ~i~~~~-shsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~---~~di~~~~~~~~l~~~---~~iiIp~ 92 (358)
T PRK13278 20 TIATIG-SHSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDD---FSDILNEAVQEKLREM---NAILIPH 92 (358)
T ss_pred eEEEEe-cccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcc---hhhhcCHHHHHHHhhc---CcEEEeC
Confidence 566665 456799999999999999999755432 2455667898887741 0111333444444443 5533334
Q ss_pred CcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCC
Q 009903 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (523)
Q Consensus 152 g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g 231 (523)
|.+........+ ..+++++.| +.++++...||..++++|+++|||+|++ +.+.++ ++||+||||..|
T Consensus 93 gs~v~y~~~d~l-~~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~----~~~~~~-------i~~PvIVKp~~g 159 (358)
T PRK13278 93 GSFVAYLGLENV-EKFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRK----YESPED-------IDRPVIVKLPGA 159 (358)
T ss_pred CCcceeecHHHH-HHCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE----eCCHHH-------cCCCEEEEeCCC
Confidence 554444343344 478888765 8999999999999999999999999986 344443 469999999999
Q ss_pred CCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeC-CCcEE--EEeeecee-----ee--
Q 009903 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVV--HFGERDCS-----IQ-- 301 (523)
Q Consensus 232 ~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~-~g~v~--~~~~~~~~-----~~-- 301 (523)
.||+|++++++.+|+.++++.+........ ...++|||||.| .||+++++... +|++. .+..+-.+ ..
T Consensus 160 ~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p 237 (358)
T PRK13278 160 KGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIP 237 (358)
T ss_pred CCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeeceeeeecccceeecc
Confidence 999999999999999999988654221111 478999999999 99999999742 24433 33222111 00
Q ss_pred -e-------cC-ceeeEecCCCCCCHHHHHHHHHHHHHHHHH----c--CCccccEEEEEEeCCCCEEEEEEecCCCCC
Q 009903 302 -R-------RN-QKLLEEAPSPALTPELRKAMGDAAVAAAAS----I--GYIGVGTVEFLLDERGSFYFMEMNTRIQVE 365 (523)
Q Consensus 302 -~-------~~-~~~~~~~p~~~l~~~~~~~l~~~a~~~~~a----l--g~~G~~~vE~~~~~~G~~~liEiNpR~~g~ 365 (523)
. .. .......|.. +.+.+..++.+.+.+++++ + |+.|++|+|+++++++.++++|||+|+.||
T Consensus 238 ~~~~~~~~~~p~~v~~Gn~P~~-~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~~gg 315 (358)
T PRK13278 238 AKDQLELGIDPTYVVVGNIPVV-LRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARIVAG 315 (358)
T ss_pred chhhhhcccCCceeEecceecc-chHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcccCC
Confidence 0 00 1112234554 7888888898998888887 4 556999999999999989999999999554
No 65
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.95 E-value=6.9e-27 Score=217.27 Aligned_cols=179 Identities=28% Similarity=0.505 Sum_probs=133.3
Q ss_pred HhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHh
Q 009903 181 IMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA 260 (523)
Q Consensus 181 ~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~ 260 (523)
++.||..|+++++++|+|+|++ ..+.+.+++.++++.++||+||||..|+||.||+++++.+|+.++++.+.....
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~--~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKT--RIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----E--EEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 4789999999999999999999 789999999999999999999999999999999999999999999998876541
Q ss_pred cCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCc--e-eeEecCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 009903 261 FGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQ--K-LLEEAPSPALTPELRKAMGDAAVAAAASIGY 337 (523)
Q Consensus 261 ~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~--~-~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~ 337 (523)
.....+++||||+| .+++++++.. +|+++.+...+........ . .......+ .+....+++.+.+.++++++|+
T Consensus 77 ~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 153 (184)
T PF13535_consen 77 LGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVP-SEPPLPEELRDLARKLLRALGY 153 (184)
T ss_dssp -HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES---CEHHHHHHHHHHHHHHHHT-
T ss_pred cCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecc-cccccHHHHHHHHHHHHHHcCC
Confidence 11368999999999 9999999988 7788666554433221111 0 11111111 2334448999999999999999
Q ss_pred -ccccEEEEEEeCCCCEEEEEEecCCCCCc
Q 009903 338 -IGVGTVEFLLDERGSFYFMEMNTRIQVEH 366 (523)
Q Consensus 338 -~G~~~vE~~~~~~G~~~liEiNpR~~g~~ 366 (523)
.|++|+||+++++|++++||||||++|++
T Consensus 154 ~~G~~~id~~~~~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 154 RNGFFHIDFIVDPDGELYFIEINPRFGGGS 183 (184)
T ss_dssp -SEEEEEEEEEETCCEEEEEEEESS--STT
T ss_pred ceEEEEEEEEEeCCCCEEEEEECccCCCCC
Confidence 59999999999989899999999998864
No 66
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.95 E-value=8.2e-26 Score=224.21 Aligned_cols=271 Identities=22% Similarity=0.264 Sum_probs=192.9
Q ss_pred EEEEc--CcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 74 ILVAN--RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 74 ILi~g--~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
|.|+. .+.....++++++++|+++.+++.+... +.+.. ... ....+|+|+...
T Consensus 2 ~~~~~~~~~~~~~~l~~a~~~~g~~~~~~~~~~~~-----------~~~~~-----~~~---------~~~~~d~v~~r~ 56 (277)
T TIGR00768 2 LAILYDRIRLDEKMLKEAAEELGIDYKVVTPPAIP-----------LTFNE-----GPR---------ELAELDVVIVRI 56 (277)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCceEEEEhHHcE-----------EeccC-----CCc---------cCCCCCEEEEec
Confidence 44443 3556788999999999999998532111 11100 000 012478888754
Q ss_pred CcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCC
Q 009903 152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231 (523)
Q Consensus 152 g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g 231 (523)
........+++.++..|++++ ++++++..+.||..++++|+++|+|+|++ ..+.+.+++.++.++++||+|+||..|
T Consensus 57 ~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t--~~~~~~~~~~~~~~~~~~p~vvKP~~g 133 (277)
T TIGR00768 57 VSMFRGLAVARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRT--GLAGSPEEALKLIEEIGFPVVLKPVFG 133 (277)
T ss_pred hhHhhHHHHHHHHHHCCCeee-CCHHHHHHHhhHHHHHHHHHHCCCCCCCE--EEeCCHHHHHHHHHhcCCCEEEEECcC
Confidence 111123467788889999987 56899999999999999999999999999 778899999999999999999999999
Q ss_pred CCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeece-eeeecCce-eeE
Q 009903 232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC-SIQRRNQK-LLE 309 (523)
Q Consensus 232 ~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~-~~~~~~~~-~~~ 309 (523)
++|.|++++++.+++..+++...... .....+++||||+|...+++.++.. +|+++....+.. .....+.. ...
T Consensus 134 ~~g~gv~~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~-~~~~~~~~~r~~~~~~~~n~~~g~~ 209 (277)
T TIGR00768 134 SWGRLVSLARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVV-GDEVIAAIYRITSGHWRTNLARGGK 209 (277)
T ss_pred CCCCceEEEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEE-CCEEEEEEEEcCCCchhhhhhcCCe
Confidence 99999999999999988876654321 0124799999999732245555544 235554433210 00011100 011
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHH
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~ 384 (523)
..+.. ++ +++.+.+.++++++|+ |++++||+++++|+++|+|||+|++ ....+..+|+|+.+++++.
T Consensus 210 ~~~~~-l~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~--~~~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 210 AEPCP-LT----EEIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPE--FKNSVKTTGVNIAGKLLDY 276 (277)
T ss_pred eeecC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcc--hhhhHHHHCCCHHHHHHhh
Confidence 12222 33 4678899999999998 8999999999988899999999984 4455677999999998864
No 67
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.95 E-value=3.3e-25 Score=219.54 Aligned_cols=295 Identities=16% Similarity=0.149 Sum_probs=211.8
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccc---cccCeeEEcCCCCCCCCCCCH--HHHHHHHHHcCCCE
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTM 146 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~---~~ad~~~~~~~~~~~~~~~~~--~~l~~~~~~~~id~ 146 (523)
.+|..+| +.+++++.+-|++.|++++++..... ..+.. .++|+++.++ ++.++ +.+.+.+++ -++
T Consensus 18 ~~i~t~~-SHsal~i~~gAk~egf~t~~v~~~~r-~~~Y~~f~~~~d~~i~~~------~f~~~~~~~~~~~l~~--~n~ 87 (366)
T PRK13277 18 VKIGVLA-SHSALDVFDGAKDEGFRTIAVCQKGR-ERTYREFKGIVDEVIVLD------KFKDILSEKVQDELRE--ENA 87 (366)
T ss_pred cEEEEEe-cchHHHHhccHHhcCCcEEEEEcCCC-cchhhhhccccceEEEec------chhhhhhHHHHHHHHH--CCe
Confidence 3566664 46789999999999999999864332 22222 4679999875 34332 244444443 356
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHh--CCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcE
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM--GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~--~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~ 224 (523)
|+.-++++.+...+-.+-.+..+|++| +...+++. +||..+.++|+++||++|+++ .+. +++.+|+
T Consensus 88 i~iPh~sf~~y~g~~~ie~~~~vp~fG-nr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~----~~p-------~eId~PV 155 (366)
T PRK13277 88 IFVPNRSFAVYVGYDAIENEFKVPIFG-NRYLLRWEERTGEKNYYWLLEKAGIPYPKLF----KDP-------EEIDRPV 155 (366)
T ss_pred EEecCCCeEEEecHHHHhhcCCCCccc-CHHHhhhhhccCHHHHHHHHHHcCCCCceee----cCc-------cccCccE
Confidence 666677776654443333368899998 57777776 889888889999999999884 232 4668999
Q ss_pred EEEeCCCCC--CCceEEeCCHHHHHHHHHHHHHHHHH-hcCCCcEEEeeccCCCcEEEEEEEEe-CCCcEEEEeeec--e
Q 009903 225 MIKATAGGG--GRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLAD-KYGNVVHFGERD--C 298 (523)
Q Consensus 225 VvKP~~g~g--s~Gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~lvEefI~G~~e~sv~v~~d-~~g~v~~~~~~~--~ 298 (523)
||||..++| |+|+++++|.+|+....+++.....- .-...+++|||||.| .+|+++++.+ -+|++..++... .
T Consensus 156 IVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~e 234 (366)
T PRK13277 156 IVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQ 234 (366)
T ss_pred EEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeeccc
Confidence 999999999 99999999999998887665421000 001245679999999 9999999987 356555543221 1
Q ss_pred e--------eee-------cCc-eeeEecCCCCCCHHHHHHHHHHHHHHHHHcC------CccccEEEEEEeCCCCEEEE
Q 009903 299 S--------IQR-------RNQ-KLLEEAPSPALTPELRKAMGDAAVAAAASIG------YIGVGTVEFLLDERGSFYFM 356 (523)
Q Consensus 299 ~--------~~~-------~~~-~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg------~~G~~~vE~~~~~~G~~~li 356 (523)
+ ..+ ... -.....|.. +.+.+.+++.+.+.+++++++ +.|++++|+++++++++|++
T Consensus 235 sn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t-~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~ 313 (366)
T PRK13277 235 SNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT-IRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVY 313 (366)
T ss_pred cccccccccChhhhhhcccCCceEEEcCcccc-chHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEE
Confidence 1 000 000 111124443 787899999999999999976 56999999999998999999
Q ss_pred EEecCCCCCccceeeecCCCHHHHHHH--HHcCCCCC
Q 009903 357 EMNTRIQVEHPVTEMISSVDLIEEQIH--VAMGGKLR 391 (523)
Q Consensus 357 EiNpR~~g~~~~~~~~~Gidl~~~~~~--~~~G~~~~ 391 (523)
|||||++|+.++.. .+|.|...++++ +.+|+.+.
T Consensus 314 EInpR~gGGtnl~~-~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 314 DVAPRIGGGTNVYM-GVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred EEcCCcCCCcccee-ecCCCcHHHHhcCccccCCcch
Confidence 99999998876654 479999999999 88888764
No 68
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.94 E-value=5.5e-25 Score=218.78 Aligned_cols=266 Identities=22% Similarity=0.295 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHH
Q 009903 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVF 160 (523)
Q Consensus 81 ~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g~~~e~~~~ 160 (523)
.-...++++++++|+++..++.+.. .+.+.. . . . ...++|++++...........
T Consensus 10 ~~~~~l~~al~~~g~~~~~~~~~~~-----------~~~~~~------~-~----~---~~~~~d~v~~r~~~~~~~~~~ 64 (280)
T TIGR02144 10 PDEKMLIEELEKLGLPYRKIYVPAL-----------PLPFGE------R-P----K---ELEDVDVAIIRCVSQSRALYS 64 (280)
T ss_pred HHHHHHHHHHHHcCCceEEEEhhhe-----------EEEcCC------C-c----c---ccCCCCEEEEcCcchhhHHHH
Confidence 3457789999999999999853311 111100 0 0 0 012478888753111122355
Q ss_pred HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEe
Q 009903 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLA 240 (523)
Q Consensus 161 a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v 240 (523)
+..++..|+++++ +++++..+.||..++++|+++|||+|++ ..+.+.+++.++.++++||+|+||..|++|+||.++
T Consensus 65 ~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t--~~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v 141 (280)
T TIGR02144 65 ARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRT--YLAFDREAALKLAEALGYPVVLKPVIGSWGRLVALI 141 (280)
T ss_pred HHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCe--EeeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEE
Confidence 6788999999874 7899999999999999999999999999 677889999888889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CcEEEEEEEEeCCCcEEEEeeeceeeeecCce-eeEecCCCCCCH
Q 009903 241 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQRRNQK-LLEEAPSPALTP 318 (523)
Q Consensus 241 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~-~~~~~p~~~l~~ 318 (523)
++.+++.++++...... ......+++|+||+| ..++++.++. ++......+.....+.+.. .....|.. +++
T Consensus 142 ~~~~~l~~~~~~~~~~~--~~~~~~~ivQefI~~~~~d~~v~vig---~~~~~~~~r~~~~~~~~~~~g~~~~~~~-~~~ 215 (280)
T TIGR02144 142 RDKDELESLLEHKEVLG--GSQHKLFYIQEYINKPGRDIRVFVIG---DEAIAAIYRYSNHWRTNTARGGKAEPCP-LDE 215 (280)
T ss_pred CCHHHHHHHHHHHHhhc--CCcCCeEEEEcccCCCCCceEEEEEC---CEEEEEEEEcCCchhhhhhcCCceeccC-CCH
Confidence 99999988765422110 001357999999986 3666666652 2333221111110111111 11122332 443
Q ss_pred HHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcC
Q 009903 319 ELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 387 (523)
Q Consensus 319 ~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G 387 (523)
++.+.+.++++++|+ |++++||+++++|.++++|||+|++.. .....+|+|+.+.+++.++.
T Consensus 216 ----~~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~--~~~~~~g~~~~~~~~~~~~~ 277 (280)
T TIGR02144 216 ----EVEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFK--NSVRVTGVNVAGEILEYAVS 277 (280)
T ss_pred ----HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchh--hhhHhhCCCHHHHHHHHHHH
Confidence 467889999999997 799999999988779999999999543 34567999999999987653
No 69
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.6e-23 Score=208.31 Aligned_cols=269 Identities=21% Similarity=0.322 Sum_probs=207.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-CCcccccHHHH
Q 009903 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFV 161 (523)
Q Consensus 83 ~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~-~g~~~e~~~~a 161 (523)
+..++++++..|+++.-++...+. ....++... . ....++|.++|. +|...|+..+.
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~-------------~-----~~~~~~~vvfp~lhG~~gEDg~iq 80 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAG----LWMLDKEVT-------------K-----RVLQKADVVFPVLHGPYGEDGTIQ 80 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccc----eEEeccccc-------------h-----hhcccCCEEEEeCCCCCCCCchHH
Confidence 788999999999999988544321 111111110 0 122457888887 78888999999
Q ss_pred HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCC----CHHHHHHHHHhcCCcEEEEeCCCCCCCce
Q 009903 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ----STEEAVKLADELGFPVMIKATAGGGGRGM 237 (523)
Q Consensus 162 ~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~----s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv 237 (523)
.+++.+|+|++|++..+.....||..+|.+++..|+|++++ ..+. +...++++.+..+||++|||....+|.|+
T Consensus 81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~--~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~ 158 (317)
T COG1181 81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPY--VALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGR 158 (317)
T ss_pred HHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccce--eeeecccchhHHHHHhhcccCCCEEEEcCCccceeeE
Confidence 99999999999999999999999999999999999999998 3443 23445677778999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeec-----eeeeecCce------
Q 009903 238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-----CSIQRRNQK------ 306 (523)
Q Consensus 238 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~-----~~~~~~~~~------ 306 (523)
.++++.+|+..+++.+... +.++++|+|+.| +|+++.++.+.. ....++..+ ..++.+..+
T Consensus 159 ~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~~-rei~v~vl~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~gg 230 (317)
T COG1181 159 SPVNVEGDLQSALELAFKY------DRDVLREQGITG-REIEVGVLGNDY-EEQALPLGEIPPKGEEFYDYEAKYLSTGG 230 (317)
T ss_pred EEeeeccchHHHHHHHHHh------CCceeeccCCCc-ceEEEEecCCcc-cceecCceEEecCCCeEEeeeccccCCCC
Confidence 9999999999988777665 489999999998 999999998743 222221111 112222111
Q ss_pred eeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC-CCCEEEEEEecCCCCC----ccceeeecCCCHHHHH
Q 009903 307 LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQ 381 (523)
Q Consensus 307 ~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~-~G~~~liEiNpR~~g~----~~~~~~~~Gidl~~~~ 381 (523)
....+|+. ++++..++++++|.++.++||+.|++.+||++++ +|++|++|||+.||.+ ++..-...|++...+.
T Consensus 231 ~~~~~pa~-lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~ 309 (317)
T COG1181 231 AQYDIPAG-LTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILV 309 (317)
T ss_pred ceeeCCCC-CCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHH
Confidence 11245554 9999999999999999999999999999999997 7889999999999844 3444455788777766
Q ss_pred HHH
Q 009903 382 IHV 384 (523)
Q Consensus 382 ~~~ 384 (523)
...
T Consensus 310 ~~~ 312 (317)
T COG1181 310 LRF 312 (317)
T ss_pred HHH
Confidence 554
No 70
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.91 E-value=1.4e-23 Score=190.61 Aligned_cols=166 Identities=25% Similarity=0.423 Sum_probs=140.1
Q ss_pred HHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEe-CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEee
Q 009903 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 270 (523)
Q Consensus 192 l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP-~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe 270 (523)
|+++|+|+|+| ..+.+.+++.++++++|||+|+|+ ..|..|+|.+++++.+|+..+++.+ +..++|+|+
T Consensus 1 l~~~gip~~~~--~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPY--ATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EE--EEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCe--EEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 68899999999 889999999999999999999995 5666999999999999999999876 358999999
Q ss_pred ccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCC
Q 009903 271 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER 350 (523)
Q Consensus 271 fI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~ 350 (523)
||+..+|+++.+.++.+|++..+...+. ...++.......|+. ++++..+++.+++.+++++|++.|++.|||+++++
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~yp~~en-~~~~~il~~s~~Pa~-i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~ 148 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRFYPPVEN-VHRDGILHESIAPAR-ISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKD 148 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEEEEEEEE-EEETTEEEEEEESCS-S-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETT
T ss_pred ccCCcEEEEEEEEEcCCCCEEEEcCceE-EEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecC
Confidence 9999999999999999999998877653 455566666677886 99999999999999999999999999999999999
Q ss_pred CC-EEEEEEecCCCCCccce
Q 009903 351 GS-FYFMEMNTRIQVEHPVT 369 (523)
Q Consensus 351 G~-~~liEiNpR~~g~~~~~ 369 (523)
|+ +|+.||.||++.+.+++
T Consensus 149 g~~v~vNEiaPRpHnSGh~T 168 (172)
T PF02222_consen 149 GDEVLVNEIAPRPHNSGHWT 168 (172)
T ss_dssp STEEEEEEEESS--GGGGGH
T ss_pred CCEEEEEeccCCccCcccEe
Confidence 98 99999999999875554
No 71
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.91 E-value=1.6e-23 Score=196.87 Aligned_cols=184 Identities=23% Similarity=0.394 Sum_probs=135.4
Q ss_pred HHHHCCCCCCCCCCccCCCHHH----HHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcE
Q 009903 191 TMKNAGVPTVPGSDGLLQSTEE----AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV 266 (523)
Q Consensus 191 ~l~~~Gip~p~~~~~~~~s~~e----~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 266 (523)
+|+++|||+|++ ..+...+. ..+....++||+||||..+++|.||.+|++.+||.++++++... +..+
T Consensus 1 l~~~~gI~tp~~--~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~v 72 (203)
T PF07478_consen 1 LLKSAGIPTPPY--VVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDV 72 (203)
T ss_dssp HHHHTT-BB-SE--EEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEE
T ss_pred ChhhcCCCCCCE--EEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceE
Confidence 578999999999 44443322 34567889999999999999999999999999999999987654 3799
Q ss_pred EEeeccCCCcEEEEEEEEeCCCcEEEEeeecee--eeec-------CceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 009903 267 YLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS--IQRR-------NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGY 337 (523)
Q Consensus 267 lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~--~~~~-------~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~ 337 (523)
||||||+| +|+++.++.++...+....+.... +... ........|+. ++++..+++.++|.++.++||+
T Consensus 73 lVEefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~~i~~~a~~a~~~lg~ 150 (203)
T PF07478_consen 73 LVEEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQEKIKEIAKKAFKALGC 150 (203)
T ss_dssp EEEE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHHHHHHHHHHHHHHTTT
T ss_pred EEEeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 999999999776555555432211 1111 12234455665 9999999999999999999999
Q ss_pred ccccEEEEEEeCCCCEEEEEEecCCCCC----ccceeeecCCCHHHHHHHH
Q 009903 338 IGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 384 (523)
Q Consensus 338 ~G~~~vE~~~~~~G~~~liEiNpR~~g~----~~~~~~~~Gidl~~~~~~~ 384 (523)
+|++.+||+++++|++||+|+|+-||.+ .+......|+++.+++-++
T Consensus 151 ~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 151 RGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp CSEEEEEEEEETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred CCceeEEEEeccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999754 2223345788877776554
No 72
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.4e-21 Score=195.02 Aligned_cols=287 Identities=22% Similarity=0.294 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCee-EEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccccc-H
Q 009903 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN-A 158 (523)
Q Consensus 81 ~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g~~~e~-~ 158 (523)
.......+++++.|+++..+++.........-.+... ..+. .....................|++++..+..... .
T Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~ 94 (318)
T COG0189 17 DTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVG--EVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFAT 94 (318)
T ss_pred chHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhh--hccccccccccccccchhccCCEEEEecCCchhhHH
Confidence 3567888999999999999864332221111111000 0000 0000000111111122223579999875443333 4
Q ss_pred HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHH-hcCCcEEEEeCCCCCCCce
Q 009903 159 VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD-ELGFPVMIKATAGGGGRGM 237 (523)
Q Consensus 159 ~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~-~~g~P~VvKP~~g~gs~Gv 237 (523)
.+++.+|..|.+++ +++.++..+.||..+.++|+.+|+|+|++ ....+.+++..+.+ .+|||+|+||.+|++|+||
T Consensus 95 ~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T--~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV 171 (318)
T COG0189 95 RFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPT--LITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGV 171 (318)
T ss_pred HHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCE--EEEcCHHHHHHHHHHhcCCCEEEeeCCCCCccce
Confidence 55678999999987 89999999999999999999999999999 78888766666555 5579999999999999999
Q ss_pred EEeCCHH-HHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEe--eec--eeeeecCceeeEecC
Q 009903 238 RLAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG--ERD--CSIQRRNQKLLEEAP 312 (523)
Q Consensus 238 ~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~--~~~--~~~~~~~~~~~~~~p 312 (523)
+++++.+ ++.+.++.+... +...+|+||||+-...-..-++.. ++.++.+. .+. ....+.+...+....
T Consensus 172 ~~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~-~~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e 245 (318)
T COG0189 172 FLVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVG-GGEVVAIYALARIPASGDFRSNLARGGRAE 245 (318)
T ss_pred EEecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEe-CCEEeEEeeeccccCCCCceeecccccccc
Confidence 9999999 888888776543 134699999998744223333333 33555532 221 111222222222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHH
Q 009903 313 SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 385 (523)
Q Consensus 313 ~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~ 385 (523)
...+++ ++.++|.+++.+||+ ++++||++.+++| .||+|||..|+ +...++..+|+|....+++..
T Consensus 246 ~~~l~~----e~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP~-~~~~i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 246 PCELTE----EEEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSPT-GKGEIERVTGVNIAGLIIDAI 311 (318)
T ss_pred ccCCCH----HHHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCCc-cccchhhhcCCchHHHHHHHH
Confidence 222555 455999999999998 8999999999888 99999999663 445566678888888887754
No 73
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.88 E-value=3.6e-22 Score=187.22 Aligned_cols=293 Identities=19% Similarity=0.185 Sum_probs=210.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE--EEeC
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM--LHPG 150 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~--Vi~~ 150 (523)
-|+|+|+....+.+++++.++.+.+..+..+ .+...+++++....... ...+......+.+++.+++... ++++
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~~ls~d-~plPt~Sr~vr~t~~w~---gphd~gaiafLrd~Aekhglkg~LLva~ 80 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVLALSAD-GPLPTYSRIVRVTTHWN---GPHDEGAIAFLRDFAEKHGLKGYLLVAC 80 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEEEEecC-CCCcchhhhheeeeccC---CCCcccHHHHHHHHHhhcCcCceEEEec
Confidence 5899999888899999999999998888533 33344777877766542 2223345677888888876543 3333
Q ss_pred CCcccccHHHHHH---H-HHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEE
Q 009903 151 YGFLAENAVFVEM---C-REHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI 226 (523)
Q Consensus 151 ~g~~~e~~~~a~~---~-~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~Vv 226 (523)
-+- |...+.+. + +...+ +-|+....+...+|-.++..+.+.|+|.|++ ..++|..|. ...++-||+|+
T Consensus 81 GDg--ev~lvSq~reeLSa~f~v--~lp~w~~l~wlceKPllY~ra~elgl~~P~T--y~v~S~~d~--~~~el~FPvIL 152 (415)
T COG3919 81 GDG--EVLLVSQYREELSAFFEV--PLPDWALLRWLCEKPLLYNRAEELGLPYPKT--YLVNSEIDT--LVDELTFPVIL 152 (415)
T ss_pred CCc--eeeehHhhHHHHHHHhcC--CCCcHHHHHHHhhCcHHHHHHHHhCCCCcce--EEecchhhh--hhhheeeeEEe
Confidence 221 33222222 2 23334 4589999999999999999999999999999 678877765 45688899999
Q ss_pred EeCCCCC-----CCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcE--EEEEEEEeCCCcEEEEeeecee
Q 009903 227 KATAGGG-----GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRH--IEFQVLADKYGNVVHFGERDCS 299 (523)
Q Consensus 227 KP~~g~g-----s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e--~sv~v~~d~~g~v~~~~~~~~~ 299 (523)
||..|.+ -..++.+.|.+++..++..+..+. +.++++|||||+|+-| ++...+.++...+..+..+...
T Consensus 153 KP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eei----gpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~r 228 (415)
T COG3919 153 KPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEI----GPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLR 228 (415)
T ss_pred cCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhc----CCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhh
Confidence 9998874 334667899999999998876654 6789999999999444 5555666755555444433221
Q ss_pred ---eeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEe-CCCCEEEEEEecCCCCCccceeeecCC
Q 009903 300 ---IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSV 375 (523)
Q Consensus 300 ---~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~-~~G~~~liEiNpR~~g~~~~~~~~~Gi 375 (523)
............+ + .+++.+.++++++.+++.|.+++||++| .||...++|||||++..+.+. .+.|+
T Consensus 229 qyPvdfgytst~vevv-----D--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~-taaG~ 300 (415)
T COG3919 229 QYPVDFGYTSTVVEVV-----D--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLV-TAAGY 300 (415)
T ss_pred cCCcccccccEEEEec-----C--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcceeeEE-ecccc
Confidence 1111111111112 1 3678899999999999999999999999 789999999999997555444 45899
Q ss_pred CHHHHHHHHHcCCC
Q 009903 376 DLIEEQIHVAMGGK 389 (523)
Q Consensus 376 dl~~~~~~~~~G~~ 389 (523)
||-..+.....+.+
T Consensus 301 nLg~~Lwa~~~~~~ 314 (415)
T COG3919 301 NLGRYLWADRINNE 314 (415)
T ss_pred cccceEEeeecCCc
Confidence 99998888777764
No 74
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.88 E-value=1.2e-22 Score=168.47 Aligned_cols=106 Identities=52% Similarity=0.911 Sum_probs=101.0
Q ss_pred EEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeec
Q 009903 405 ECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (523)
Q Consensus 405 ~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~ 484 (523)
++|+|+|++..+|.|++|.|..+..|..+++|++..++.|+.|+++||+++++||++|+|+++|++++.++++++.|.|+
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~Gv 80 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEGV 80 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEESS
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEECc
Confidence 48999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhcCCccccCCccccCcc
Q 009903 485 PTTIEYHKLILDVEDFKNGKVDTAFI 510 (523)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (523)
.||++||+.||.||+|.+|.++|.||
T Consensus 81 ~TNi~fl~~ll~~~~f~~g~~~T~~l 106 (107)
T PF02785_consen 81 KTNIPFLRALLAHPEFRSGTYDTGFL 106 (107)
T ss_dssp SHSHHHHHHHHTSHHHHTT-SSTTHH
T ss_pred cCCHHHHHHHhCCcccccCCCeeecc
Confidence 99999999999999999999999998
No 75
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.88 E-value=2.4e-21 Score=177.50 Aligned_cols=173 Identities=27% Similarity=0.407 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcE-EEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcC
Q 009903 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV-MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG 262 (523)
Q Consensus 184 dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~-VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~ 262 (523)
+|..+|++|+++|||++++ ..++|.+++.+++++.++|+ |||+..-++|+||.++.+.++..++++++... ..|+
T Consensus 2 SK~faK~fm~~~~IPTa~~--~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~fg 77 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKY--KVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKFG 77 (194)
T ss_dssp BHHHHHHHHHHTT-SB--E--EEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STTC
T ss_pred CHHHHHHHHHHcCCCCCCe--eEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--cccC
Confidence 7999999999999999999 88999999999999999999 99999999999999999999999999988652 2333
Q ss_pred --CCcEEEeeccCCCcEEEEEEEEeCCCcEEEEee-eceee------eecCceeeEecCCCCCCHHHHHHHHH-HHHHHH
Q 009903 263 --NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDCSI------QRRNQKLLEEAPSPALTPELRKAMGD-AAVAAA 332 (523)
Q Consensus 263 --~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~-~~~~~------~~~~~~~~~~~p~~~l~~~~~~~l~~-~a~~~~ 332 (523)
...++||||+.| .|+|+.++.|++ +++.+.. ++... ..+....+.++|.+.++++..+++.+ +...++
T Consensus 78 ~~~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~ 155 (194)
T PF01071_consen 78 DAGSKVVIEEFLEG-EEVSLFALTDGK-NFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTL 155 (194)
T ss_dssp CCGSSEEEEE---S-EEEEEEEEEESS-EEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHH
T ss_pred CCCCcEEEEeccCC-eEEEEEEEEcCC-eEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHH
Confidence 468999999999 999999999987 5555533 22221 22233455678888788888777775 555555
Q ss_pred HHc-----CCccccEEEEEEeCCCCEEEEEEecCCC
Q 009903 333 ASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQ 363 (523)
Q Consensus 333 ~al-----g~~G~~~vE~~~~~~G~~~liEiNpR~~ 363 (523)
++| .|.|++.+.++++++| |++||.|.|+|
T Consensus 156 ~~l~~eg~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 156 KGLKKEGIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp HHHHHTT---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred HHHHhcCCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 555 5669999999999999 99999999994
No 76
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.86 E-value=1.5e-20 Score=201.73 Aligned_cols=245 Identities=23% Similarity=0.336 Sum_probs=176.9
Q ss_pred CeeEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCcccccHHH-------HHHHHHcCCceeCCCHHHHHHhCCH
Q 009903 115 DESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLHPGYGFLAENAVF-------VEMCREHGINFIGPNPDSIRIMGDK 185 (523)
Q Consensus 115 d~~~~~~~~~~~~~~~~~--~~l~~~~~~~~id~Vi~~~g~~~e~~~~-------a~~~~~~gl~~~g~~~~~~~~~~dK 185 (523)
++.+++++++..+ .+. +.|++.+++.++++++... +...+ +..++.. +. .-++..++..+.||
T Consensus 227 ~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~s----e~~~~~L~~g~~~~~~~~s-~~-~~~s~~ai~~~~DK 298 (547)
T TIGR03103 227 NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLDA----EGGLFRLSLGGRSIRCRES-LS-ELTSAVAMSLCDDK 298 (547)
T ss_pred CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEECC----CCCEEEecCCceEEEEEec-cC-CCCCHHHHHHhcCH
Confidence 6777777655544 555 8899999999999998642 21111 0111111 11 12688999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEE-eCCHHHHHHHHHHHHHHHHHhcCCC
Q 009903 186 STARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGND 264 (523)
Q Consensus 186 ~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~-v~~~~el~~~~~~~~~~~~~~~~~~ 264 (523)
..++++|+++|||+|++ ..+.+.+++.++++++| |+||||..|++|+||.+ +++.+++.++++.+... ..
T Consensus 299 ~~tk~lL~~aGIpVP~~--~~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~------~~ 369 (547)
T TIGR03103 299 RLTRRLVSEAGLQVPEQ--QLAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQF------CD 369 (547)
T ss_pred HHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhc------CC
Confidence 99999999999999999 67889999999999998 69999999999999997 99999999999887654 26
Q ss_pred cEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceee--eecC---------------c----------------------
Q 009903 265 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI--QRRN---------------Q---------------------- 305 (523)
Q Consensus 265 ~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~--~~~~---------------~---------------------- 305 (523)
.+|+|+||+| .++.+.++. |+++....+.... .... .
T Consensus 370 ~vlvEe~i~G-~d~Rv~Vig---g~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g 445 (547)
T TIGR03103 370 RVLLERYVPG-EDLRLVVID---FEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAG 445 (547)
T ss_pred cEEEEEeccC-CeEEEEEEC---CEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcC
Confidence 8999999999 888886662 3555554332110 0000 0
Q ss_pred -----------ee--------eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC-CC-CEEEEEEecCCCC
Q 009903 306 -----------KL--------LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RG-SFYFMEMNTRIQV 364 (523)
Q Consensus 306 -----------~~--------~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~-~G-~~~liEiNpR~~g 364 (523)
.+ .....+..++++...++.+.|.++++++|+ .+++||++.++ ++ ...|||+|.|||-
T Consensus 446 ~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl-~~~GvD~i~~~~~~p~~~iiEvN~~Pgl 524 (547)
T TIGR03103 446 LDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDI-PVVGIDFLVPDVTGPDYVIIEANERPGL 524 (547)
T ss_pred CCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEeccCCCCCeEEEEecCCccc
Confidence 00 001111225667778899999999999999 69999999974 22 2599999999954
Q ss_pred CccceeeecCCCHHHHHHHHHc
Q 009903 365 EHPVTEMISSVDLIEEQIHVAM 386 (523)
Q Consensus 365 ~~~~~~~~~Gidl~~~~~~~~~ 386 (523)
..+ ..-|..+.+++++.
T Consensus 525 ~~h-----~~~~~~~~~~d~lf 541 (547)
T TIGR03103 525 ANH-----EPQPTAERFIDLLF 541 (547)
T ss_pred ccc-----CCCchHHHHHHHhC
Confidence 322 24577778877763
No 77
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.86 E-value=5.5e-22 Score=180.14 Aligned_cols=157 Identities=22% Similarity=0.352 Sum_probs=89.8
Q ss_pred hCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhc
Q 009903 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF 261 (523)
Q Consensus 182 ~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~ 261 (523)
|.||.+++++|+++|+|+|.++ ..... ....+|+|+||..|+||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~--~~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTL--RDSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCcc--ccccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 5799999999999999999441 11111 12268999999999999999999999988765543
Q ss_pred CCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeeee---cCceeeEecCCCCCCHHHHHHHHHHHHHHHHHc-CC
Q 009903 262 GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR---RNQKLLEEAPSPALTPELRKAMGDAAVAAAASI-GY 337 (523)
Q Consensus 262 ~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~---~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~al-g~ 337 (523)
..++||||+| .++|++++.++. ....++........ .....+...|. .....+++.+++.+++++| |+
T Consensus 63 ---~~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l~~~rq~i~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~i~~~l~gl 134 (161)
T PF02655_consen 63 ---LRIVQEFIEG-EPYSVSFLASGG-GARLLGVNRQLIGNDDGRFRYCGGIVPA---DTPLKEEIIELARRIAEALPGL 134 (161)
T ss_dssp -----EEEE---S-EEEEEEEEE-SS-SEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT-
T ss_pred ---ceEEeeeeCC-EEeEEEEEEeCC-ceEEEEechHhhccccceeeeccccccc---CCchHHHHHHHHHHHHHHcCCC
Confidence 2399999999 999999999855 55555444333321 12223333343 3344789999999999999 99
Q ss_pred ccccEEEEEEeCCCCEEEEEEecCCCCC
Q 009903 338 IGVGTVEFLLDERGSFYFMEMNTRIQVE 365 (523)
Q Consensus 338 ~G~~~vE~~~~~~G~~~liEiNpR~~g~ 365 (523)
.|.+++||++++++ +|+||||||++++
T Consensus 135 ~G~~giD~I~~~~~-~~viEINPR~t~S 161 (161)
T PF02655_consen 135 RGYVGIDFILDDGG-PYVIEINPRFTGS 161 (161)
T ss_dssp -EEEEEEEEESS-S-EEEEEEESS--GG
T ss_pred eeeEeEEEEEeCCc-EEEEEEcCCCCCC
Confidence 99999999999855 9999999999753
No 78
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.86 E-value=1.6e-21 Score=162.15 Aligned_cols=107 Identities=55% Similarity=0.913 Sum_probs=103.5
Q ss_pred EEEEeeCCCCCCCCCCCceEEEEecCCCCcEEEeeeecCCcccCCCCCcceEEEEEEcCCHHHHHHHHHHHhhcCeEeec
Q 009903 405 ECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 484 (523)
Q Consensus 405 ~~~~~a~~~~~~~~~~~g~v~~~~~~~~~~v~~~~~~~~G~~v~~~~~~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~ 484 (523)
++|+|+|++..+|.|++|.|..+..|..+++|++..++.|+.|+++||++++++|++|+|+++|++++.++++++.|.|+
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~Gv 80 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEGV 80 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEECc
Confidence 37899999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhcCCccccCCccccCccc
Q 009903 485 PTTIEYHKLILDVEDFKNGKVDTAFIP 511 (523)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (523)
.||++||+.|+.|++|.+|.++|.||.
T Consensus 81 ~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 81 KTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred cCCHHHHHHHhcCHhhhcCcccccccC
Confidence 999999999999999999999999984
No 79
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.85 E-value=1.2e-20 Score=176.41 Aligned_cols=183 Identities=28% Similarity=0.424 Sum_probs=111.0
Q ss_pred hCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhc-CCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHh
Q 009903 182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA 260 (523)
Q Consensus 182 ~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~-g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~ 260 (523)
+.||..+.++|+++|||+|++ ..+.+.+++.++.+++ ++|+|+||..|+.|.||.++++.+++...++.....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t--~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~---- 74 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPET--RVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL---- 74 (190)
T ss_dssp -HBHHHHHHHHHHTT-----E--EEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred CCCHHHHHHHHHHCCcCCCCE--EEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc----
Confidence 369999999999999999999 7899999999999999 899999999999999999999999999887765332
Q ss_pred cCCCcEEEeeccCCC--cEEEEEEEEeCCCcEEEEeeeceee--eecCceee-EecCCCCCCHHHHHHHHHHHHHHHHHc
Q 009903 261 FGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGERDCSI--QRRNQKLL-EEAPSPALTPELRKAMGDAAVAAAASI 335 (523)
Q Consensus 261 ~~~~~~lvEefI~G~--~e~sv~v~~d~~g~v~~~~~~~~~~--~~~~~~~~-~~~p~~~l~~~~~~~l~~~a~~~~~al 335 (523)
+..+++|+||+.. +++.+.++ .++++....+.... ++.+.... ...+. +..+++.+.+.++++++
T Consensus 75 --~~~~~~Q~fI~~~~g~d~Rv~Vi---g~~vv~a~~r~~~~~d~r~n~~~g~~~~~~-----~l~~e~~~~a~~~~~~l 144 (190)
T PF08443_consen 75 --ENPILVQEFIPKDGGRDLRVYVI---GGKVVGAYRRSSPEGDFRTNLSRGGKVEPY-----DLPEEIKELALKAARAL 144 (190)
T ss_dssp --TTT-EEEE----SS---EEEEEE---TTEEEEEEE------------------EE---------HHHHHHHHHHHHHT
T ss_pred --cCcceEeccccCCCCcEEEEEEE---CCEEEEEEEEecCcccchhhhccCceEEEe-----cCCHHHHHHHHHHHHHh
Confidence 3788999999973 47887777 33666654433111 11111111 11122 23356778999999999
Q ss_pred CCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHH
Q 009903 336 GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 384 (523)
Q Consensus 336 g~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~ 384 (523)
|+ .+++||++.+++| ++|+|||+.+ ++...+..+|+|+.+.+++.
T Consensus 145 gl-~~~giDi~~~~~~-~~v~EvN~~~--~~~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 145 GL-DFAGIDILDTNDG-PYVLEVNPNP--GFRGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp T--SEEEEEEEEETTE-EEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred CC-CEEEEEEEecCCC-eEEEEecCCc--hHhHHHHHHCcCHHHHHHhh
Confidence 98 6999997666665 9999999998 67778788999999998864
No 80
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.84 E-value=2.9e-19 Score=197.85 Aligned_cols=254 Identities=21% Similarity=0.337 Sum_probs=187.7
Q ss_pred CCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE--------EEeCCCcccccHHHHHHHHHcCCceeCC
Q 009903 103 TIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM--------LHPGYGFLAENAVFVEMCREHGINFIGP 174 (523)
Q Consensus 103 ~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~--------Vi~~~g~~~e~~~~a~~~~~~gl~~~g~ 174 (523)
+.+....+.+.+++.+.++| ....|++.+++.+++. +.+++|+.+ +.++..+.. ++
T Consensus 141 ~~~~~~~~~~~~~~~~~lgp--------st~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~------~~i~~~~~~--~~ 204 (727)
T PRK14016 141 DLEAALARLRELDEDERLGP--------STAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQ------RRIQAAETD--QT 204 (727)
T ss_pred CHHHHHHHHHHHHHhcccCC--------CHHHHHHHHHHcCCCEEEeCCCCeEecCCcHHH------HHHHHhcCC--CC
Confidence 33444555666677777762 3468999999999988 777776533 334444443 67
Q ss_pred CHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEE-eCCHHHHHHHHHHH
Q 009903 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQA 253 (523)
Q Consensus 175 ~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~-v~~~~el~~~~~~~ 253 (523)
+..++..+.||..++++|+++|||+|++ ..+.+.+++.++++++|||+|+||..|++|+||.+ +++.+++.++++.+
T Consensus 205 s~~a~~i~~DK~~tk~lL~~~GIPvP~~--~~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 205 SAIAVDIACDKELTKRLLAAAGVPVPEG--RVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred cHHHHHHhCCHHHHHHHHHHCCcCCCCe--eEeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence 8999999999999999999999999999 78899999999999999999999999999999998 99999999999887
Q ss_pred HHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeee--ecC--------------------c------
Q 009903 254 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ--RRN--------------------Q------ 305 (523)
Q Consensus 254 ~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~--~~~--------------------~------ 305 (523)
... ...+|||+||+| ++|++.++ .|+++....+..... ..+ .
T Consensus 283 ~~~------~~~viVEe~I~G-~d~Rv~Vv---gg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i 352 (727)
T PRK14016 283 SKE------SSDVIVERYIPG-KDHRLLVV---GGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKI 352 (727)
T ss_pred HHh------CCeEEEEEecCC-ceEEEEEE---CCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCccccc
Confidence 654 278999999999 99988665 346776654432110 000 0
Q ss_pred -------------------------eeeE--------ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC---
Q 009903 306 -------------------------KLLE--------EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE--- 349 (523)
Q Consensus 306 -------------------------~~~~--------~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~--- 349 (523)
.+.. ...+...++....++.+.+.++++.+|+ +++.||++.++
T Consensus 353 ~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~ 431 (727)
T PRK14016 353 KLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISK 431 (727)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCccc
Confidence 0000 0011124556667788999999999998 79999999864
Q ss_pred ----CCCEEEEEEecCCCCCccc-eeeecCCCHHHHHHHHHc
Q 009903 350 ----RGSFYFMEMNTRIQVEHPV-TEMISSVDLIEEQIHVAM 386 (523)
Q Consensus 350 ----~G~~~liEiNpR~~g~~~~-~~~~~Gidl~~~~~~~~~ 386 (523)
+| ..++|||..|+-.... .....+.|....+++.+.
T Consensus 432 p~~~~~-~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~L~ 472 (727)
T PRK14016 432 PLEEQG-GAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDMLF 472 (727)
T ss_pred ccccCC-cEEEEEcCCcchhhccCCCCCcchhHHHHHHHHhc
Confidence 45 8999999999543211 223456777777777754
No 81
>PRK12458 glutathione synthetase; Provisional
Probab=99.81 E-value=5.3e-18 Score=171.90 Aligned_cols=283 Identities=15% Similarity=0.117 Sum_probs=174.3
Q ss_pred cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHH-------HHcCCCEEEeCCC
Q 009903 80 GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA-------ISRGCTMLHPGYG 152 (523)
Q Consensus 80 g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~id~Vi~~~g 152 (523)
..+..+++.+|.++||++.++++..-........+.....+..... ............. .-..+|+|++..+
T Consensus 10 ~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~ 88 (338)
T PRK12458 10 TDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKY-KKPENFLSFLKKAEFKKERLPLAGFDVIFLRAN 88 (338)
T ss_pred CchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcc-cCccchhhHhhccccccccCchhhCCEEEEeCC
Confidence 4567889999999999999996433221111112211111210000 0000000111110 0124899998632
Q ss_pred cccc--cHHHH--------HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCC
Q 009903 153 FLAE--NAVFV--------EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF 222 (523)
Q Consensus 153 ~~~e--~~~~a--------~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~ 222 (523)
.... ...++ ..++..|++++ +++++++.+.||..+.++++ +++|++ .+..+.+++.++++++++
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T--~v~~~~~~~~~~~~~~~~ 162 (338)
T PRK12458 89 PPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTT--HISRNKEYIREFLEESPG 162 (338)
T ss_pred CCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCE--EEeCCHHHHHHHHHHcCC
Confidence 2111 12222 33366788766 89999999999999977655 688988 678889999999999976
Q ss_pred c-EEEEeCCCCCCCceEEeCCHHH--HHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEE------EE
Q 009903 223 P-VMIKATAGGGGRGMRLAKEPDE--FVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV------HF 293 (523)
Q Consensus 223 P-~VvKP~~g~gs~Gv~~v~~~~e--l~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~------~~ 293 (523)
| +|+||..|+||+||+++++.++ +...++.+.. ...+++|+||++..+..+.++.- +|+++ +.
T Consensus 163 ~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv-~g~~v~~~g~~~a 234 (338)
T PRK12458 163 DKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL-NGEPLERDGHYAA 234 (338)
T ss_pred CeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE-CCEEEeeccceeE
Confidence 5 9999999999999999987664 5555544321 36899999999733334444432 34666 44
Q ss_pred eeecee--eeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHc---CCccccEEEEEEeCCCCEEEEEEecCCCCCccc
Q 009903 294 GERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI---GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPV 368 (523)
Q Consensus 294 ~~~~~~--~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~al---g~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~ 368 (523)
..+... ..+.+...........++++ ..+++.++..+| |+ .++.||++ | .+++|||++.+++...
T Consensus 235 ~~R~~~~~d~RsN~~~Gg~~~~~~l~~~----~~~ia~~~~~~l~~~GL-~~~gVDli----~-~~l~EIN~~sp~g~~~ 304 (338)
T PRK12458 235 MRRVPAGGDVRSNVHAGGSVVKHTLTKE----ELELCEAIRPKLVRDGL-FFVGLDIV----G-DKLVEVNVFSPGGLTR 304 (338)
T ss_pred EEEecCCCCeeecccCCCcccCcCCCHH----HHHHHHHHHHHHhhcCC-eEEeEEEE----C-CEEEEEeCCCcchHHH
Confidence 332211 11111111111112225544 446666665555 65 58899998 3 5699999998778777
Q ss_pred eeeecCCCHHHHHHHHHcC
Q 009903 369 TEMISSVDLIEEQIHVAMG 387 (523)
Q Consensus 369 ~~~~~Gidl~~~~~~~~~G 387 (523)
++..+|+|+...+++....
T Consensus 305 ~~~~~g~d~a~~i~~~i~~ 323 (338)
T PRK12458 305 INKLNKIDFVEDIIEALER 323 (338)
T ss_pred HHHHhCCCHHHHHHHHHHH
Confidence 7888999999999987643
No 82
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=158.65 Aligned_cols=253 Identities=17% Similarity=0.201 Sum_probs=174.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCC-HHHHHHHHHHcCCCEEE-eCCCcccccHHHH
Q 009903 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL-IPNVLSAAISRGCTMLH-PGYGFLAENAVFV 161 (523)
Q Consensus 84 ~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~-~~~l~~~~~~~~id~Vi-~~~g~~~e~~~~a 161 (523)
-.+.++.++.|+.++......++.. ...+ ..+ ..+ .+.+-+.++ ++|+-+ ...+.....-.+.
T Consensus 28 esll~~F~~~~ve~y~~~~f~~~~i-g~~f----~s~--------~~~~~~~~ek~le--~~Da~LvIAPEdd~lLy~Lt 92 (307)
T COG1821 28 ESLLRAFAKSGVEVYETLTFADPSI-GVRF----KST--------ADDVLRDEEKALE--KADATLVIAPEDDGLLYSLT 92 (307)
T ss_pred HHHHHHHHhcCceEEEeeccccccc-ceee----ecc--------hhHHHHHHHHHHh--cCCeeEEEecCcCChHHHHH
Confidence 3467778888977766533222211 1111 001 112 223333443 577532 2232111234666
Q ss_pred HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeC
Q 009903 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK 241 (523)
Q Consensus 162 ~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~ 241 (523)
+..++. ...+|+|+++++.+.||..+.+.|+.+ +++|+++ . +.+.+..+|+||.+|.||.|+....
T Consensus 93 ri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~--e----------~~~~~~k~ViKp~dgCgge~i~~~~ 158 (307)
T COG1821 93 RIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTR--E----------WAEEPKKYVIKPADGCGGEGILFGR 158 (307)
T ss_pred HHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCcc--c----------cccCCceEEecccccCCcceeeccC
Confidence 777877 667899999999999999999999999 9999983 1 2234557899999999999999887
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeee-ecCceeeEecCCCCCCHHH
Q 009903 242 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-RRNQKLLEEAPSPALTPEL 320 (523)
Q Consensus 242 ~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~-~~~~~~~~~~p~~~l~~~~ 320 (523)
+..++ +|+||||+| .++||+ +.+|+ .+..++..++.+. ......+...+.+ .+.+.
T Consensus 159 ~~pd~-------------------~i~qEfIeG-~~lSVS-L~~GE-kv~pLsvNrQfi~~~~~~~~y~gg~~p-i~he~ 215 (307)
T COG1821 159 DFPDI-------------------EIAQEFIEG-EHLSVS-LSVGE-KVLPLSVNRQFIIFAGSELVYNGGRTP-IDHEL 215 (307)
T ss_pred CCcch-------------------hhHHHhcCC-cceEEE-EecCC-ccccceechhhhhhccceeeeccCcCC-CCcHH
Confidence 76653 589999999 999999 55555 5555544333111 1122233344555 78899
Q ss_pred HHHHHHHHHHHHHHcC-CccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCCCC
Q 009903 321 RKAMGDAAVAAAASIG-YIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 390 (523)
Q Consensus 321 ~~~l~~~a~~~~~alg-~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~~~ 390 (523)
.+++.+.|.++++.++ ++|+++||+++. |+ ||+||||||+....-....+++-++.++++.-..|.-+
T Consensus 216 k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~-pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~~ 284 (307)
T COG1821 216 KREAFEEAIRAVECIPGLNGYVGVDLVLS-DE-PYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKVL 284 (307)
T ss_pred HHHHHHHHHHHHHhhccccceeeEEEEec-CC-cEEEEecCCCCcceeeeeccccHHHHHHHhcCcccccc
Confidence 9999999999999995 889999999997 55 99999999996545556667899898888887777643
No 83
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.76 E-value=1.4e-16 Score=160.16 Aligned_cols=275 Identities=15% Similarity=0.130 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCe-eEEcCCCCCCCCCCCHH--HHHHHHHHcCCCEEEeCCCccc---
Q 009903 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE-SVCIGEAPSSQSYLLIP--NVLSAAISRGCTMLHPGYGFLA--- 155 (523)
Q Consensus 82 ~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~-~~~~~~~~~~~~~~~~~--~l~~~~~~~~id~Vi~~~g~~~--- 155 (523)
+..+++++++++|+++.+++.+.-......-.+.. .+.+.. ....+.... ....+ ..+|+|++..+...
T Consensus 19 st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~l---~~~D~v~~R~~~~~~~~ 93 (312)
T TIGR01380 19 TTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGP--NKQDWYTLGEKVRLSL---GELDAVLMRKDPPFDME 93 (312)
T ss_pred hHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEecc--CCcceeecCccccccc---ccCCEEEEeCCCCCChh
Confidence 57889999999999999995432211111111110 011110 001111100 11111 24899997643211
Q ss_pred --ccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCC
Q 009903 156 --ENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGG 233 (523)
Q Consensus 156 --e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~g 233 (523)
....+++.++..|++++ |++++++.+.||..+.+++. ++|++ ....+.+++.+++++.| |+|+||..|++
T Consensus 94 ~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T--~v~~~~~~~~~~~~~~g-~vVvKPl~G~~ 165 (312)
T TIGR01380 94 YIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPT--LVTRDKAEIRAFLAEHG-DIVLKPLDGMG 165 (312)
T ss_pred hhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCE--EEeCCHHHHHHHHHHcC-CEEEEECCCCC
Confidence 11356788888999876 89999999999999887753 79998 67889999999999998 99999999999
Q ss_pred CCceEEeCCH-HHHHHHHHHHHHHHHHhcCCCcEEEeeccCC--CcEEEEEEEEeCCCcEEE-Eeeecee--eeecCcee
Q 009903 234 GRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCS--IQRRNQKL 307 (523)
Q Consensus 234 s~Gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lvEefI~G--~~e~sv~v~~d~~g~v~~-~~~~~~~--~~~~~~~~ 307 (523)
|+||+++++. .++...++.+.. .+...+++|+||+. ..++.+.++ +|+++. ...+... ..+.+...
T Consensus 166 G~gv~~v~~~~~~~~~~~~~~~~-----~~~~~~~vQ~yI~~~~~~D~Rv~vv---~g~vv~~ai~R~~~~gd~r~N~~~ 237 (312)
T TIGR01380 166 GEGIFRLDPGDPNFNSILETMTQ-----RGREPVMAQRYLPEIKEGDKRILLI---DGEPIGAAVARIPAGGEFRGNLAV 237 (312)
T ss_pred CceEEEEcCCCccHHHHHHHHHh-----ccCCcEEEEeccccccCCCEEEEEE---CCeEEEEEEEecCCCCCccccccC
Confidence 9999998753 334333333221 12468999999984 267777666 346654 3322211 11222211
Q ss_pred -eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHH
Q 009903 308 -LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 385 (523)
Q Consensus 308 -~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~ 385 (523)
....+.. ++++.. ++.+.+...++++|+ .++.||++ | .+|+|||+.-..++...+..+|+|+.+.+++.+
T Consensus 238 Gg~~~~~~-l~~e~~-~ia~~~~~~~~~~gl-~~agVDii----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 238 GGRGEATE-LSERDR-EICADVAPELKRRGL-LFVGIDVI----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred CceeeccC-CCHHHH-HHHHHHHHHHHhcCC-cEEEEEEe----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 1222332 565543 444444444566777 68899998 5 679999987434566677779999999998765
No 84
>PRK05246 glutathione synthetase; Provisional
Probab=99.75 E-value=1.9e-16 Score=159.78 Aligned_cols=277 Identities=15% Similarity=0.127 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCee-EEcCCCCCCCCCCCHH--HHHHHHHHcCCCEEEeCCCcccc--
Q 009903 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIP--NVLSAAISRGCTMLHPGYGFLAE-- 156 (523)
Q Consensus 82 ~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~~~~~~~~~~~~~~~--~l~~~~~~~~id~Vi~~~g~~~e-- 156 (523)
+..+++++++++|++++++++..-......-.+... +.++. ....+.... ....+ ..+|+|+...+....
T Consensus 20 st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~--~~~~w~~~~~~~~~~l---~~~D~v~~R~~~~~~~~ 94 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRD--DKGDWYELGEEQRLPL---ADFDVILMRKDPPFDME 94 (316)
T ss_pred hHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEecc--CCccceeccccccCcc---ccCCEEEEcCCCCCChH
Confidence 468899999999999999954322111010001000 11111 011111100 01111 137999976332111
Q ss_pred ---cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCC
Q 009903 157 ---NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGG 233 (523)
Q Consensus 157 ---~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~g 233 (523)
...+.+.++..|++++ |+++++..+.||..+.+++. ++|++ ....+.+++.+++++.+ |+|+||..|++
T Consensus 95 ~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T--~~~~~~~~~~~~~~~~~-~vVlKP~~G~~ 166 (316)
T PRK05246 95 YIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPT--LVTRDKAEIRAFRAEHG-DIILKPLDGMG 166 (316)
T ss_pred HHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCE--EEeCCHHHHHHHHHHCC-CEEEEECCCCC
Confidence 1246677787899876 89999999999999988765 78998 77889999999999998 99999999999
Q ss_pred CCceEEeCC-HHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC--CcEEEEEEEEeCCCcEEE-Eeeecee--eeecCcee
Q 009903 234 GRGMRLAKE-PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCS--IQRRNQKL 307 (523)
Q Consensus 234 s~Gv~~v~~-~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G--~~e~sv~v~~d~~g~v~~-~~~~~~~--~~~~~~~~ 307 (523)
|+||+++.. ..++...++.+.. .+...+++|+||+. ..++++.++ +|+++. ...+... ..+.+...
T Consensus 167 G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv---~g~vv~~a~~R~~~~~~~rtN~~~ 238 (316)
T PRK05246 167 GAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLV---DGEPVGYALARIPAGGETRGNLAA 238 (316)
T ss_pred ccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEE---CCEEhhheeEecCCCCCcccCccC
Confidence 999999954 4444444433322 13468999999976 356776665 346665 4333211 11222111
Q ss_pred -eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHc
Q 009903 308 -LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAM 386 (523)
Q Consensus 308 -~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~ 386 (523)
....+.. ++++. .++...+.+.++.+|+ .+++||++ | .||+|||..-.+++...+..+|+|+.+.+++...
T Consensus 239 Gg~~~~~~-l~~~~-~~ia~~~~~~l~~~gl-~~~GVDli----~-~~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 239 GGRGEATP-LTERD-REICAAIGPELKERGL-IFVGIDVI----G-DYLTEINVTSPTGIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred CceEeccC-CCHHH-HHHHHHHHHHHHHhCC-CEEEEEEe----C-CEEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 1222332 55543 3333444444456666 58899998 4 3699999874345888888899999999998765
Q ss_pred C
Q 009903 387 G 387 (523)
Q Consensus 387 G 387 (523)
.
T Consensus 311 ~ 311 (316)
T PRK05246 311 A 311 (316)
T ss_pred H
Confidence 4
No 85
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.73 E-value=2.4e-16 Score=177.99 Aligned_cols=200 Identities=26% Similarity=0.382 Sum_probs=153.1
Q ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEE-eCCHHHHHHHHHH
Q 009903 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQ 252 (523)
Q Consensus 174 ~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~-v~~~~el~~~~~~ 252 (523)
.+.-++..+.||..++++|+++|||+|++ ..+.+.+++.++++++|||+|+||..|++|+||.+ +.+.+++.++++.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~--~~~~s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~ 280 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEG--TVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEA 280 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHH
Confidence 56789999999999999999999999999 78999999999999999999999999999999998 9999999999988
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceee-------------e------e---cCc-----
Q 009903 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI-------------Q------R---RNQ----- 305 (523)
Q Consensus 253 ~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~-------------~------~---~~~----- 305 (523)
+... ...+|||+||+| +||++.++ .++++....+.... . + .+.
T Consensus 281 a~~~------~~~vlVEefI~G-~e~rvlVv---~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~ 350 (864)
T TIGR02068 281 AVEE------SSGVIVERFITG-RDHRLLVV---GGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTK 350 (864)
T ss_pred HHhh------CCcEEEEEeccC-CEEEEEEE---CCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccc
Confidence 7654 368999999999 99998665 34666664443211 0 0 000
Q ss_pred --------------------------ee-e-------EecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC--
Q 009903 306 --------------------------KL-L-------EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-- 349 (523)
Q Consensus 306 --------------------------~~-~-------~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~-- 349 (523)
.+ + ....+...+++...+..+.|.++++++|+ .++.||++..+
T Consensus 351 i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~ 429 (864)
T TIGR02068 351 IRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDIS 429 (864)
T ss_pred cCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCC
Confidence 00 0 01111224667777888999999999999 57889998852
Q ss_pred ----CCCEEEEEEecCCCCC-ccceeeecCCCHHHHHHHHHc
Q 009903 350 ----RGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVAM 386 (523)
Q Consensus 350 ----~G~~~liEiNpR~~g~-~~~~~~~~Gidl~~~~~~~~~ 386 (523)
.....+||+|+.|+-. +.......+.++...+++.+.
T Consensus 430 ~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 430 RPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred CCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 1226899999999543 333344567888888888776
No 86
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.73 E-value=3.7e-16 Score=172.61 Aligned_cols=199 Identities=20% Similarity=0.267 Sum_probs=146.3
Q ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhc-CCcEEEEeCCCCCCCceEEe---CCHHHHHHH
Q 009903 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLA---KEPDEFVKL 249 (523)
Q Consensus 174 ~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~-g~P~VvKP~~g~gs~Gv~~v---~~~~el~~~ 249 (523)
++..+...++||..++++|+++|||+|++ ..+.+.+++.+.++++ |||+||||..|++|+||.++ .+.+++.++
T Consensus 478 ~s~~s~~~~~DK~~tk~lL~~~GIpvP~~--~~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 478 DNYISPLIMENKVVTKKILAEAGFPVPAG--DEFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKA 555 (752)
T ss_pred CHHHHHHHhhCHHHHHHHHHHCCcCCCCE--EEEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHH
Confidence 45557788899999999999999999999 6788888888877764 89999999999999999986 468888888
Q ss_pred HHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeecee-------------eeec---------Cce-
Q 009903 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS-------------IQRR---------NQK- 306 (523)
Q Consensus 250 ~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~-------------~~~~---------~~~- 306 (523)
++.+... +..+||||||+| +||++.++ + |+++....+... +... +..
T Consensus 556 ~~~a~~~------~~~vlVEEfI~G-~E~Rv~Vi-g--gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~ 625 (752)
T PRK02471 556 LEIAFRE------DSSVLVEEFIVG-TEYRFFVL-D--GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTP 625 (752)
T ss_pred HHHHHhc------CCcEEEEecccC-CEEEEEEE-C--CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccccc
Confidence 8776433 368999999999 99999777 2 356655333111 0000 000
Q ss_pred -------------------eeE-------------------ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEe
Q 009903 307 -------------------LLE-------------------EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD 348 (523)
Q Consensus 307 -------------------~~~-------------------~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~ 348 (523)
... +..+..+++.......+.|.++++++|+. +++||++..
T Consensus 626 l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~ 704 (752)
T PRK02471 626 LEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIP 704 (752)
T ss_pred ccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeC
Confidence 000 01112366777788999999999999985 777999987
Q ss_pred CC------C--CEEEEEEecCCCCC-ccceeeecCCCHHHHHHHHH
Q 009903 349 ER------G--SFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVA 385 (523)
Q Consensus 349 ~~------G--~~~liEiNpR~~g~-~~~~~~~~Gidl~~~~~~~~ 385 (523)
+- . ...+||+|++|+-. |..-......|+.+.+++++
T Consensus 705 di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d~l 750 (752)
T PRK02471 705 DLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILDKL 750 (752)
T ss_pred CCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHHHh
Confidence 41 1 37899999999654 44444456677888877764
No 87
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.72 E-value=1.9e-17 Score=139.07 Aligned_cols=110 Identities=50% Similarity=0.822 Sum_probs=102.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|.|||||+|+|+++.+++++++++|+++++++++++..+.+...+|+.+.+++.+..++|.+.+.+++++++.++|+++|
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 67999999999999999999999999999999999999999999999999987888899999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHH
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~ 179 (523)
++++++|+..+++.+++.|+.++||+++++
T Consensus 81 Gyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 81 GYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred ccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 999999999999999999999999999875
No 88
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.72 E-value=2.7e-16 Score=170.89 Aligned_cols=199 Identities=20% Similarity=0.264 Sum_probs=147.1
Q ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhc-CCcEEEEeCCCCCCCceEEeCC---HHHHHHH
Q 009903 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKE---PDEFVKL 249 (523)
Q Consensus 174 ~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~-g~P~VvKP~~g~gs~Gv~~v~~---~~el~~~ 249 (523)
.+..+..++.||..++++|+++|||+|++ ..+.+.+++.+....+ ++|+||||..|++|.||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g--~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFG--DEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 45677899999999999999999999998 7788888777777776 6999999999999999999866 7888888
Q ss_pred HHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeecee-------------ee---------ecCc--
Q 009903 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS-------------IQ---------RRNQ-- 305 (523)
Q Consensus 250 ~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~-------------~~---------~~~~-- 305 (523)
++.+... +..+|||+||+| +||++.|+.+ +++....+.-. +. ..+.
T Consensus 543 l~~A~~~------~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred HHHHHhc------CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 8776433 368999999999 9999988843 55555332100 00 0000
Q ss_pred --ee---------------eE-------------------ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC
Q 009903 306 --KL---------------LE-------------------EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 349 (523)
Q Consensus 306 --~~---------------~~-------------------~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~ 349 (523)
++ .. +..+..+++.......++|+++++++|+. +++||++..+
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecC
Confidence 00 00 01112366777788999999999999996 9999999863
Q ss_pred CC--------CEEEEEEecCCCCC-ccceeeecCCCHHHHHHHHH
Q 009903 350 RG--------SFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVA 385 (523)
Q Consensus 350 ~G--------~~~liEiNpR~~g~-~~~~~~~~Gidl~~~~~~~~ 385 (523)
-. ...+||+|++|+-. |..-....+.|+...+++++
T Consensus 692 i~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~l 736 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIKFL 736 (737)
T ss_pred CCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHHhh
Confidence 21 25699999999754 44455556777777777653
No 89
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.70 E-value=3e-15 Score=149.24 Aligned_cols=228 Identities=14% Similarity=0.148 Sum_probs=153.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-CCcccccHHHH
Q 009903 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFV 161 (523)
Q Consensus 83 ~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~-~g~~~e~~~~a 161 (523)
...+++++++.|++++.++.+.. .. ....+|+|+-- .+.........
T Consensus 38 ~~~l~~~~~~~Gi~~v~Id~~~p-l~-------------------------------~qgpfDvilhK~~~~~~~~~~~~ 85 (328)
T PLN02941 38 QPSLEALARSKGIDLVAIDPSRP-LS-------------------------------EQGPFDVILHKLYGKEWRQQLEE 85 (328)
T ss_pred hHHHHHHHHHCCCeEEEecCCCC-cc-------------------------------ccCCcCEEEEecCCHHHHHHHHH
Confidence 45689999999999999954321 00 01134555532 11100111223
Q ss_pred HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCCCccCCCHHHHH---HHHHhcCCcEEEEeCCC
Q 009903 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG-------VPTVPGSDGLLQSTEEAV---KLADELGFPVMIKATAG 231 (523)
Q Consensus 162 ~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~G-------ip~p~~~~~~~~s~~e~~---~~~~~~g~P~VvKP~~g 231 (523)
...+..|++++ +++++++.+.||..|.+.|+++| ||+|++ .++.+.+.+. ....+++||+|+||..|
T Consensus 86 ~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t--~v~~~~~~al~~~~~~~~l~~P~V~KPl~g 162 (328)
T PLN02941 86 YREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQ--LVVYDDESSIPDAVALAGLKFPLVAKPLVA 162 (328)
T ss_pred HHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCE--EEEcCHHHHHHHHHHHhcCCCCEEEeeccc
Confidence 44566689887 88999999999999999999999 999999 6777776533 34568899999999999
Q ss_pred ---CCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CcEEEEEEEEeCCCcEEEEeeeceeeee---cC
Q 009903 232 ---GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQR---RN 304 (523)
Q Consensus 232 ---~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~e~sv~v~~d~~g~v~~~~~~~~~~~~---~~ 304 (523)
+.|+++.++.+.+.|.. + ...+++||||+- +..|.|-|+++ ++..+......... .+
T Consensus 163 ~Gss~gh~m~lv~~~~~L~~----l---------~~p~~lQEfVnh~g~d~RVfVvGd---~v~~~~R~S~~n~~~~~~n 226 (328)
T PLN02941 163 DGSAKSHKMSLAYDQEGLSK----L---------EPPLVLQEFVNHGGVLFKVYVVGD---YVKCVRRFSLPDVSEEELS 226 (328)
T ss_pred CCCccccceEEecCHHHHHh----c---------CCcEEEEEecCCCCEEEEEEEECC---EEEEEEecCCccccccccc
Confidence 88999999999988875 1 257999999943 47777777754 34222111110000 00
Q ss_pred ceee-----------E----ec-----CCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCC--CCEEEEEEecCC
Q 009903 305 QKLL-----------E----EA-----PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER--GSFYFMEMNTRI 362 (523)
Q Consensus 305 ~~~~-----------~----~~-----p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~--G~~~liEiNpR~ 362 (523)
.... . .. |.. ......+++.+++.++.++||+ +++++|++.+.+ +++++||||.-|
T Consensus 227 ~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~-~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~~~VidVN~fP 304 (328)
T PLN02941 227 SAEGVLPFPRVSNAAASADDADNGGLDPEV-AELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDRYYVIDINYFP 304 (328)
T ss_pred cccccccccccccccccccccccccccccc-ccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCceEEEEecCCC
Confidence 0000 0 00 000 1112235689999999999998 799999999953 359999999998
Q ss_pred C
Q 009903 363 Q 363 (523)
Q Consensus 363 ~ 363 (523)
+
T Consensus 305 ~ 305 (328)
T PLN02941 305 G 305 (328)
T ss_pred c
Confidence 3
No 90
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.66 E-value=2.6e-14 Score=136.37 Aligned_cols=271 Identities=18% Similarity=0.238 Sum_probs=188.4
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCc--cccccCeeEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEE
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTML 147 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~--~~~~ad~~~~~~~~~~~~~~~~~--~~l~~~~~~~~id~V 147 (523)
-+|..+| +.+++++.+.|++.|++++++... ....+ ....+++.+.++ ++.|. +.+.+-.++ -++|
T Consensus 19 i~Iat~g-SHSaL~Il~GAK~EGF~Ti~v~~~-gr~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~--~n~I 88 (361)
T COG1759 19 ITIATIG-SHSALQILDGAKEEGFRTIAVCQR-GREKPYEKFPVADEVIIVD------KFSDILNEEIQEELRE--LNAI 88 (361)
T ss_pred eEEEEee-cchHHHHhhhHHhcCCcEEEEEec-CccchHHhhchhheEEEec------hhHHHhhHHHHHHHHH--cCeE
Confidence 3455554 567999999999999999998643 22222 333466777664 23332 122232332 4667
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEE
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK 227 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvK 227 (523)
+.-++++.....+-....+.-+|.+| +.+.+++-.|....+.+|+++|++.|+- ..+++|+ .-|++||
T Consensus 89 ~IP~gSfv~Y~G~d~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~~----~~~PeeI-------dr~VIVK 156 (361)
T COG1759 89 FIPHGSFVAYVGYDGIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPKK----YKSPEEI-------DRPVIVK 156 (361)
T ss_pred EecCCceEEEecchhhhhcccCcccc-cHhHhhhhcchhhHHHHHHHcCCCCCcc----cCChHHc-------CCceEEe
Confidence 66677766655544566677899988 6899999999999999999999999964 6778776 4599999
Q ss_pred eCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHh-cCCCcEEEeeccCCCcEEEEEEEEeC---CCcEEEEeeeceeeeec
Q 009903 228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA-FGNDGVYLEKYVQNPRHIEFQVLADK---YGNVVHFGERDCSIQRR 303 (523)
Q Consensus 228 P~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~-~~~~~~lvEefI~G~~e~sv~v~~d~---~g~v~~~~~~~~~~~~~ 303 (523)
....-|++|-+++.|.+|+.+..+++.....-. -+-.++.|||||-| ..+.+..+... .-+++.+..+-.+....
T Consensus 157 ~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg 235 (361)
T COG1759 157 LPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGIDRRYESNLDG 235 (361)
T ss_pred cCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeeeeheeeccchh
Confidence 999999999999999999999998876532100 01247999999999 66667666522 22333332221111000
Q ss_pred C---------------c-eeeEecCCCCCCHHHHHHHHHHHHHHHHHc------CCccccEEEEEEeCCCCEEEEEEecC
Q 009903 304 N---------------Q-KLLEEAPSPALTPELRKAMGDAAVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTR 361 (523)
Q Consensus 304 ~---------------~-~~~~~~p~~~l~~~~~~~l~~~a~~~~~al------g~~G~~~vE~~~~~~G~~~liEiNpR 361 (523)
. . ......|.. +.+.+..++.+++.+.+++- |+.|+|..|.++|++=++++.|+.+|
T Consensus 236 ~~RlPa~~ql~l~~~ptyvv~Gn~p~v-lRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~R 314 (361)
T COG1759 236 LVRLPAKDQLELNLEPTYVVVGNIPVV-LRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSAR 314 (361)
T ss_pred hccCCHHHHhhcCCCceEEEECCcchh-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEecc
Confidence 0 0 111223443 77888888888888877764 77899999999999888999999999
Q ss_pred CCCCc
Q 009903 362 IQVEH 366 (523)
Q Consensus 362 ~~g~~ 366 (523)
++||.
T Consensus 315 i~gGT 319 (361)
T COG1759 315 IVGGT 319 (361)
T ss_pred ccCCc
Confidence 98774
No 91
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.59 E-value=6.6e-14 Score=138.63 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=128.5
Q ss_pred CCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHH----HHHHHHHhcCC-cEEEEeCCCCCCCceEEeCCHHH--
Q 009903 173 GPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE----EAVKLADELGF-PVMIKATAGGGGRGMRLAKEPDE-- 245 (523)
Q Consensus 173 g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~----e~~~~~~~~g~-P~VvKP~~g~gs~Gv~~v~~~~e-- 245 (523)
.++.+..-++.||..+..+|+++|||+|++ ..+.+.+ ++.++++ ++ |+|+||..|++|+||.++++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T--~~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~GrGI~~i~~~~~~~ 101 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPEL--YGVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGKGILVITSRKDGR 101 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCE--EEecCchhhHHHHHHHHc--cCCCEEEEECCCCCccCeEEEEeccccc
Confidence 367888889999999999999999999998 4455544 3333333 45 69999999999999999976543
Q ss_pred -------------HHHHHHHHHHHHHHhcC-CCcEEEeeccCCC-----------cEEEEEEEEeCCCcEEEEeeecee-
Q 009903 246 -------------FVKLLQQAKSEAAAAFG-NDGVYLEKYVQNP-----------RHIEFQVLADKYGNVVHFGERDCS- 299 (523)
Q Consensus 246 -------------l~~~~~~~~~~~~~~~~-~~~~lvEefI~G~-----------~e~sv~v~~d~~g~v~~~~~~~~~- 299 (523)
+..++...........+ .+.+++|+++... ..+.+.++.+ +.+....+...
T Consensus 102 ~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~---~~vaa~~R~~~~ 178 (317)
T TIGR02291 102 YRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG---YPVMAMMRLPTR 178 (317)
T ss_pred cccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC---EEEEEEEEccCc
Confidence 33433322111111111 1245665544431 3455555532 33333222110
Q ss_pred --eeecCceeeEec-----------------------CC-----CCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeC
Q 009903 300 --IQRRNQKLLEEA-----------------------PS-----PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 349 (523)
Q Consensus 300 --~~~~~~~~~~~~-----------------------p~-----~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~ 349 (523)
.++.+...+..+ |. ..+..+..+++.+++.++.+++|+ |++.+|++++.
T Consensus 179 ~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~ 257 (317)
T TIGR02291 179 ASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDK 257 (317)
T ss_pred cCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeC
Confidence 111111111100 00 012336668899999999999998 99999999986
Q ss_pred CCCEEEEEEecCCCCCccceeeecCCCHHHHHHHHHcCC
Q 009903 350 RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 388 (523)
Q Consensus 350 ~G~~~liEiNpR~~g~~~~~~~~~Gidl~~~~~~~~~G~ 388 (523)
++.++++|+|+.++-+ +......|++..-..+...+-.
T Consensus 258 ~~g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~~~~~~~ 295 (317)
T TIGR02291 258 EEGPLVLELNARPGLA-IQIANGAGLLPRLKHIEARLET 295 (317)
T ss_pred CCCEEEEEeCCCCCCC-HHHHHHCCCcHHHHHHHHhhhh
Confidence 6559999999999765 3333446777666666654443
No 92
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.28 E-value=2.7e-10 Score=111.55 Aligned_cols=185 Identities=21% Similarity=0.324 Sum_probs=122.8
Q ss_pred HHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC-CC--CCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEE
Q 009903 163 MCREHGINFIGPNPDSIRIMGDKSTARETMKNAG-VP--TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL 239 (523)
Q Consensus 163 ~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~G-ip--~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~ 239 (523)
+-++.|++++.+ ...||+.+.+.|.+.. +. .|+| ....+.+++.+++++.+ -++|||..|+.|+||.+
T Consensus 3 ~k~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T--~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~r 73 (262)
T PF14398_consen 3 LKKQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPET--ELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIR 73 (262)
T ss_pred hHhcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCc--eEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEE
Confidence 345678888754 3589999999999853 33 6788 77899999999999887 59999999999999887
Q ss_pred eC----------------------CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC----CcEEEEEEE--EeCCCcEE
Q 009903 240 AK----------------------EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN----PRHIEFQVL--ADKYGNVV 291 (523)
Q Consensus 240 v~----------------------~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G----~~e~sv~v~--~d~~g~v~ 291 (523)
++ +.+++...+.... +...+|||+.|+= ++.|.+-++ .++.|.-.
T Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 74 IEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL-------GKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred EEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc-------CCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 63 3455555554432 3569999999862 255555555 46565433
Q ss_pred E--Eeeece---eeeecCceeeEecCCC-CC-----CHHHHHHHHHHHHHHHHHc----CC-ccccEEEEEEeCCCCEEE
Q 009903 292 H--FGERDC---SIQRRNQKLLEEAPSP-AL-----TPELRKAMGDAAVAAAASI----GY-IGVGTVEFLLDERGSFYF 355 (523)
Q Consensus 292 ~--~~~~~~---~~~~~~~~~~~~~p~~-~l-----~~~~~~~l~~~a~~~~~al----g~-~G~~~vE~~~~~~G~~~l 355 (523)
. +..+.. .+..+....+...+.. .+ .....++|.+.+..+++.| |. -|-+++|+-+|.+|++|+
T Consensus 147 vtg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWl 226 (262)
T PF14398_consen 147 VTGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWL 226 (262)
T ss_pred EEEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEE
Confidence 2 222211 0111111111111110 01 2335666777777777665 55 378899999999999999
Q ss_pred EEEecCCC
Q 009903 356 MEMNTRIQ 363 (523)
Q Consensus 356 iEiNpR~~ 363 (523)
||+|++|+
T Consensus 227 iEvN~kP~ 234 (262)
T PF14398_consen 227 IEVNSKPG 234 (262)
T ss_pred EEEeCCCC
Confidence 99999994
No 93
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=99.20 E-value=9.5e-10 Score=108.93 Aligned_cols=182 Identities=18% Similarity=0.218 Sum_probs=121.0
Q ss_pred CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCC------c---cCCCHHHHHHHHHhc-CCcEEEEeCCCCCCCceEEeCCH
Q 009903 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSD------G---LLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEP 243 (523)
Q Consensus 174 ~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~------~---~~~s~~e~~~~~~~~-g~P~VvKP~~g~gs~Gv~~v~~~ 243 (523)
++.+....+.||..+++++.+.|||+|+... . ...+.+++.++++.. ..++|+||..|++|+|+.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 6788999999999999999999999999310 0 134678888888775 57999999999999999998665
Q ss_pred H------HHHHHHHHHHHHHHHhcCCCcEEEeeccCC-----------CcEEEEEEEEeCCCcEEEEee--ec---eee-
Q 009903 244 D------EFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-----------PRHIEFQVLADKYGNVVHFGE--RD---CSI- 300 (523)
Q Consensus 244 ~------el~~~~~~~~~~~~~~~~~~~~lvEefI~G-----------~~e~sv~v~~d~~g~v~~~~~--~~---~~~- 300 (523)
+ +.......+.. .....+||||+|.- -..+.+.++.+. +.+..+.. +- ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~-----~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~ 169 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-----LGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGV 169 (285)
T ss_pred cCcccccchhHHHHHHHh-----cCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcc
Confidence 4 12222221111 11128999999863 223455555554 44332211 00 000
Q ss_pred e-----------------------ecCceeeEecCCC-----CCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCC
Q 009903 301 Q-----------------------RRNQKLLEEAPSP-----ALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGS 352 (523)
Q Consensus 301 ~-----------------------~~~~~~~~~~p~~-----~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~ 352 (523)
. .........-|.. .+.-+..+++.+.+.++.+.+-..++++.|+.+|++|
T Consensus 170 DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G- 248 (285)
T PF14397_consen 170 DNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG- 248 (285)
T ss_pred cccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-
Confidence 0 0000111111211 1233567899999999999887779999999999999
Q ss_pred EEEEEEecCC
Q 009903 353 FYFMEMNTRI 362 (523)
Q Consensus 353 ~~liEiNpR~ 362 (523)
|++||.|.+.
T Consensus 249 p~llE~N~~~ 258 (285)
T PF14397_consen 249 PVLLEGNARW 258 (285)
T ss_pred cEEEEeeCCC
Confidence 9999999994
No 94
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.10 E-value=5.1e-09 Score=108.74 Aligned_cols=177 Identities=20% Similarity=0.274 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcC-CcEEEEeCCC--C-C-CCceEEeCCHHHHHHHHHHHHHHHH
Q 009903 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAG--G-G-GRGMRLAKEPDEFVKLLQQAKSEAA 258 (523)
Q Consensus 184 dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g-~P~VvKP~~g--~-g-s~Gv~~v~~~~el~~~~~~~~~~~~ 258 (523)
+.+..|++|+++|||+|++ ..+.+.+++.++++++| ||+|+||... + | +-||.++.+.+++.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~--~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRG--YVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 4677899999999999998 77899999999999999 9999999722 2 2 2389999999999999988754211
Q ss_pred Hhc-----C--CCcEEEeeccCCCcEEEEEEEEeC--CCcEEEEeee-----ceeee--ecCceeeEecCCC--------
Q 009903 259 AAF-----G--NDGVYLEKYVQNPRHIEFQVLADK--YGNVVHFGER-----DCSIQ--RRNQKLLEEAPSP-------- 314 (523)
Q Consensus 259 ~~~-----~--~~~~lvEefI~G~~e~sv~v~~d~--~g~v~~~~~~-----~~~~~--~~~~~~~~~~p~~-------- 314 (523)
... + -..++||+|+++.+|+.+.++.|. .+.++.++.. +.... +.........|..
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~ 161 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAR 161 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHH
Confidence 000 1 136999999995599999999985 4556665420 00000 0000011111211
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCccccEEE---EEEeCCCCEEEEEEecCC
Q 009903 315 ------ALTPELRKAMGDAAVAAAASIGYIGVGTVE---FLLDERGSFYFMEMNTRI 362 (523)
Q Consensus 315 ------~l~~~~~~~l~~~a~~~~~alg~~G~~~vE---~~~~~~G~~~liEiNpR~ 362 (523)
.++....+++.+++.++.+.+.-.....+| ++++++|+++.+...-.+
T Consensus 162 ~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~ 218 (386)
T TIGR01016 162 EIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTI 218 (386)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEee
Confidence 145566677777777777766533344444 345555555555544444
No 95
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=99.10 E-value=4.9e-09 Score=108.97 Aligned_cols=108 Identities=30% Similarity=0.413 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhc-CCcEEEEeCCCCCCC----ceEEeCCHHHHHHHHHHHHHHHH
Q 009903 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEAA 258 (523)
Q Consensus 184 dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~-g~P~VvKP~~g~gs~----Gv~~v~~~~el~~~~~~~~~~~~ 258 (523)
+++.+|++|+++|||+|++ ..+.+.+++.++++++ |||+|+||....+++ ||.+..+.+++.++++++.....
T Consensus 4 ~e~~ak~lL~~~gIpvp~~--~~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRG--IVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCC--eeeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 5788999999999999999 7899999999999999 999999998655554 89999999999999988764321
Q ss_pred ---Hh--cC--CCcEEEeeccCCCcEEEEEEEEeC-CCcEEEE
Q 009903 259 ---AA--FG--NDGVYLEKYVQNPRHIEFQVLADK-YGNVVHF 293 (523)
Q Consensus 259 ---~~--~~--~~~~lvEefI~G~~e~sv~v~~d~-~g~v~~~ 293 (523)
.. .+ -..++||+++++..|+.+.+..|. .|.++.+
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~ 124 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFM 124 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEE
Confidence 00 01 136999999996599999999986 4666654
No 96
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.84 E-value=6.7e-09 Score=94.39 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=77.8
Q ss_pred CCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCH-HHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc-
Q 009903 199 TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR- 276 (523)
Q Consensus 199 ~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~- 276 (523)
+|++ .+..+.+++.+|.++.+. +|+||..|.||+||+++... ..+...++.+... +...+++|+|++...
T Consensus 12 ~P~T--~vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~-----~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPT--LVSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKN-----GERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--E--EEES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTT-----TTS-EEEEE--GGGGG
T ss_pred CcCE--EEECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhc-----CCccEEEEeccccccC
Confidence 4777 678899999999999998 99999999999999999774 4555555544322 245799999999722
Q ss_pred -EEEEEEEEeCCCcEEEEeeecee--eeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCcc--ccEEEEEEeCCC
Q 009903 277 -HIEFQVLADKYGNVVHFGERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIG--VGTVEFLLDERG 351 (523)
Q Consensus 277 -e~sv~v~~d~~g~v~~~~~~~~~--~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G--~~~vE~~~~~~G 351 (523)
|.++-++ +|+.++...+.-. ..+.+...+...-...+++..+ +++.++...|.-+| ++++|++ |
T Consensus 84 GDkRii~~---nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e~----~i~~~i~~~L~~~Gl~f~GiDvi----g 152 (173)
T PF02955_consen 84 GDKRIILF---NGEPSHAVRRIPAKGDFRSNLAAGGSAEPAELTERER----EICEQIGPKLREDGLLFVGIDVI----G 152 (173)
T ss_dssp -EEEEEEE---TTEE-SEEEEE--SS-S---GGGTSCEEEEE--HHHH----HHHHHHHHHHHHTT--EEEEEEE----T
T ss_pred CCEEEEEE---CCEEhHHeecCCCCCCceeeeccCCceeecCCCHHHH----HHHHHHHHHHhhcCcEEEEEecc----c
Confidence 4555444 4455554333211 1121111111111112454443 44444444443233 7789987 4
Q ss_pred CEEEEEEecCCCCC
Q 009903 352 SFYFMEMNTRIQVE 365 (523)
Q Consensus 352 ~~~liEiNpR~~g~ 365 (523)
-|++|||---.++
T Consensus 153 -~~l~EiNvtsp~g 165 (173)
T PF02955_consen 153 -DKLTEINVTSPTG 165 (173)
T ss_dssp -TEEEEEE-SS---
T ss_pred -cceEEEeccCchh
Confidence 4899999865544
No 97
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.72 E-value=1.1e-07 Score=90.32 Aligned_cols=173 Identities=26% Similarity=0.384 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCC-----CCCceEE-eCCHHHHHHHHHHHHHHH
Q 009903 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-----GGRGMRL-AKEPDEFVKLLQQAKSEA 257 (523)
Q Consensus 184 dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~-----gs~Gv~~-v~~~~el~~~~~~~~~~~ 257 (523)
+-...+++|+.+|||+|++ ..+.|.+++.++++++|||+++|-..-. .--||.+ +.+.+++.++++++....
T Consensus 11 ~e~e~~~lL~~yGI~~~~~--~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~ 88 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPT--RLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERV 88 (222)
T ss_dssp -HHHHHHHHHTTT--------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCe--eEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHH
Confidence 5567899999999999999 8899999999999999999999997543 3447877 899999999999987665
Q ss_pred HHhcC---CCcEEEeeccC-CCcEEEEEEEEeC-CCcEEEEeeeceeeeecCceeeEecCCCCCCHHHHHHHHHHHHHHH
Q 009903 258 AAAFG---NDGVYLEKYVQ-NPRHIEFQVLADK-YGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAA 332 (523)
Q Consensus 258 ~~~~~---~~~~lvEefI~-G~~e~sv~v~~d~-~g~v~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~ 332 (523)
..... ...++||+.++ +..|+.+-+..|. .|.++.++.--....-. ... ....+| ++....+++.+.....-
T Consensus 89 ~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~GG~~vE~~-~D~-~~~l~P-l~~~~a~~mi~~l~~~~ 165 (222)
T PF13549_consen 89 AAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGLGGIFVELL-KDV-AFRLPP-LSEADAREMIRELRAYP 165 (222)
T ss_dssp HHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE-STTHHHH-----EEEESS---HHHHHHHHHTSTTHH
T ss_pred HHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcCCCceeeee-cce-EEeeCC-CCHHHHHHHHHHHHhHH
Confidence 43222 36899999999 4499999999975 57888885532111111 111 122333 67766666655544333
Q ss_pred HHcCCccccEEE-------------EEEeCCCCEEEEEEecCC
Q 009903 333 ASIGYIGVGTVE-------------FLLDERGSFYFMEMNTRI 362 (523)
Q Consensus 333 ~alg~~G~~~vE-------------~~~~~~G~~~liEiNpR~ 362 (523)
..-|++|.-..| +.. +..++.=+|+||=+
T Consensus 166 lL~G~RG~p~~d~~al~~~l~~ls~l~~-~~p~I~eldiNPl~ 207 (222)
T PF13549_consen 166 LLRGYRGRPPADLDALADLLVRLSQLAA-DLPEIAELDINPLI 207 (222)
T ss_dssp HHH-------B-HHHHHHHHHHHHHHHH-HTTTEEEEEEEEEE
T ss_pred hhcccCCCCCcCHHHHHHHHHHHHHHHH-hCCCEEEEEeeceE
Confidence 333555542222 222 23458888888865
No 98
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.47 E-value=8.9e-06 Score=84.23 Aligned_cols=108 Identities=23% Similarity=0.229 Sum_probs=85.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCc-EEEEeCCCC----CCCceEEeCCHHHHHHHHHHHHHHHH-
Q 009903 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGG----GGRGMRLAKEPDEFVKLLQQAKSEAA- 258 (523)
Q Consensus 185 K~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P-~VvKP~~g~----gs~Gv~~v~~~~el~~~~~~~~~~~~- 258 (523)
-+..+++|+++|||+|++ ..+.+.+++.+.++++|+| +|+|..... -+-||.+..|.+++.++++++.....
T Consensus 5 E~eak~lL~~yGIpvp~~--~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 5 EYQAKELLASFGVAVPRG--ALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHHHHHHHHcCCCCCCc--eEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 456789999999999999 7899999999999999995 599974333 24458888999999999998875421
Q ss_pred -H-----hcCCCcEEEeeccCCCcEEEEEEEEeC-CCcEEEEe
Q 009903 259 -A-----AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 294 (523)
Q Consensus 259 -~-----~~~~~~~lvEefI~G~~e~sv~v~~d~-~g~v~~~~ 294 (523)
. ...-..++||+++++..|+.+.+..|. .|.++.++
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 0 011247999999997799999999985 46666664
No 99
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.46 E-value=2.6e-06 Score=84.26 Aligned_cols=174 Identities=16% Similarity=0.253 Sum_probs=103.7
Q ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCCCccCC-CHHHHHHHH--HhcCCcEEEEeCCCC---CC
Q 009903 168 GINFIGPNPDSIRIMGDKSTARETMKNA-------GVPTVPGSDGLLQ-STEEAVKLA--DELGFPVMIKATAGG---GG 234 (523)
Q Consensus 168 gl~~~g~~~~~~~~~~dK~~~r~~l~~~-------Gip~p~~~~~~~~-s~~e~~~~~--~~~g~P~VvKP~~g~---gs 234 (523)
.+.++ -++++++.+.|+..|.+.+++. .+.+|++ ..+. +.+++.+.. ..+.||+|+||.... .|
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~--v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 154 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKF--VVINSDAESLPELLKEAGLKFPLICKPLVACGSADS 154 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-E--EEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCC
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCce--EEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccc
Confidence 56665 5789999999999999988774 6788888 5555 444455544 356799999997544 56
Q ss_pred CceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CcEEEEEEEEeCCCcEEEEeeec-ee-eee---cC-cee
Q 009903 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERD-CS-IQR---RN-QKL 307 (523)
Q Consensus 235 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~e~sv~v~~d~~g~v~~~~~~~-~~-~~~---~~-~~~ 307 (523)
..+.++.+++.|.+. ..++++||||.- +.-|-|-++++ .+ .+..+. .. +.. .. ...
T Consensus 155 H~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd---~v-~~v~R~SLpn~~~~~~~~~~~~ 217 (307)
T PF05770_consen 155 HKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGD---KV-FVVKRPSLPNVSSGKLDREEIF 217 (307)
T ss_dssp CEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETT---EE-EEEEEE------SSS-TCGGCC
T ss_pred eEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecC---EE-EEEECCCCCCCCcccccccccc
Confidence 779999999998752 268999999985 35555555533 22 222221 00 000 00 000
Q ss_pred eE---------------ec--CCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEe-CC-CCEEEEEEecCCC
Q 009903 308 LE---------------EA--PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ER-GSFYFMEMNTRIQ 363 (523)
Q Consensus 308 ~~---------------~~--p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~-~~-G~~~liEiNpR~~ 363 (523)
+. .. +.. ....-.+.+.+++..+=++||+ ..+++|++++ .+ |++++|+||-=||
T Consensus 218 f~~~~vs~~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~VIDINyFPg 290 (307)
T PF05770_consen 218 FDFHQVSKLESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYYVIDINYFPG 290 (307)
T ss_dssp CEGGGTCSTTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEEEEEEEES--
T ss_pred eeccccCCccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEEEEEeccCCC
Confidence 00 00 111 1112235678888888889999 6999999998 56 7899999999884
No 100
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.43 E-value=1.1e-05 Score=83.76 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhc---CCcEEEEeCCCCCCC-----------ceEEeCCHHHHHH
Q 009903 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL---GFPVMIKATAGGGGR-----------GMRLAKEPDEFVK 248 (523)
Q Consensus 183 ~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~---g~P~VvKP~~g~gs~-----------Gv~~v~~~~el~~ 248 (523)
-+-+..+++|+++|||+|++ .++.+.+|+.+.++++ ++|+|+|+.--.|++ ||.++++ +++.+
T Consensus 30 l~EyqaK~LL~~~GIpvp~~--~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~ 106 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKG--AAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEE 106 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHH
Confidence 35677899999999999999 8899999999999998 699999998444433 3667766 99999
Q ss_pred HHHHHHHHHH--H-----hcCCCcEEEeeccCCCcEEEEEEEEeCC--CcEEE
Q 009903 249 LLQQAKSEAA--A-----AFGNDGVYLEKYVQNPRHIEFQVLADKY--GNVVH 292 (523)
Q Consensus 249 ~~~~~~~~~~--~-----~~~~~~~lvEefI~G~~e~sv~v~~d~~--g~v~~ 292 (523)
+++++..... . ...-..++|+|.+....|+-+.+..|.. |.++.
T Consensus 107 aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil 159 (422)
T PLN00124 107 LAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLII 159 (422)
T ss_pred HHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEE
Confidence 9988865421 0 0112357766666655899999999863 45553
No 101
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.43 E-value=1.9e-06 Score=85.96 Aligned_cols=107 Identities=29% Similarity=0.418 Sum_probs=86.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcC-CcEEEEeCCCCCCC----ceEEeCCHHHHHHHHHHHHHHH--
Q 009903 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEA-- 257 (523)
Q Consensus 185 K~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g-~P~VvKP~~g~gs~----Gv~~v~~~~el~~~~~~~~~~~-- 257 (523)
-+..+++|+++|||+|++ ..+.+.+++.++++++| .|+|+|+---.|++ ||.+++|.+|..++.+++....
T Consensus 5 EYqaKelf~~~GiPvp~g--~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPG--YVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCc--eeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 467899999999999999 78999999999999998 79999997766665 4999999999999998876521
Q ss_pred --HHhcCCCcEEEeeccC-CCcEEEEEEEEeCCCcEEEE
Q 009903 258 --AAAFGNDGVYLEKYVQ-NPRHIEFQVLADKYGNVVHF 293 (523)
Q Consensus 258 --~~~~~~~~~lvEefI~-G~~e~sv~v~~d~~g~v~~~ 293 (523)
.....-..++||++++ -.+||-+.++.|...+...+
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 1111124899999999 43499999998876655555
No 102
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.37 E-value=6.9e-06 Score=74.35 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=100.7
Q ss_pred CCHHHHHHhCCHHHHHHHHH----HC---CCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHH
Q 009903 174 PNPDSIRIMGDKSTARETMK----NA---GVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEF 246 (523)
Q Consensus 174 ~~~~~~~~~~dK~~~r~~l~----~~---Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el 246 (523)
+|..++-++.||-+....|. +. .+|..+. ...-+..+. +....||+|||--.+.+|.|-.+++|..++
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQ--t~ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~ 75 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQ--TYYPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDF 75 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B-----EEESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCccccccee--eecCChhhh---ccCCCCCEEEEEccccCceeEEEEccHHHH
Confidence 46788999999987766553 23 4554443 122333322 233479999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeece-eee--ecCceeeEecCCCCCCHHHHHH
Q 009903 247 VKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC-SIQ--RRNQKLLEEAPSPALTPELRKA 323 (523)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~-~~~--~~~~~~~~~~p~~~l~~~~~~~ 323 (523)
.+...-+... +..+.+|+||+-..++.++-+++ +..++..+.. ..+ +.....++..+. + ++
T Consensus 76 qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~---~ykA~~R~sis~nWK~N~gsa~lEqi~~---~----~r 139 (203)
T PF02750_consen 76 QDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKANTGSAMLEQIAM---T----ER 139 (203)
T ss_dssp HHHHHHHHHH------TS-EEEEE---EEEEEEEEEETT---EEEEEEEEESSSTSSTTSSSEEEEEE----------HH
T ss_pred HHHHHHHHhc------CceEEeeccccceeEEEEEEEcC---eEEEEEEccccccccccccchheeecCC---C----hH
Confidence 8766554432 47899999998766666666643 5566644321 111 112223333332 2 55
Q ss_pred HHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecC
Q 009903 324 MGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTR 361 (523)
Q Consensus 324 l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR 361 (523)
...++.++.+.+|---++.+|.+..+||+-|++|+|--
T Consensus 140 yk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds 177 (203)
T PF02750_consen 140 YKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDS 177 (203)
T ss_dssp HHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-T
T ss_pred HHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCC
Confidence 66788888888854469999999999999999999965
No 103
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=98.31 E-value=2.5e-05 Score=75.35 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=108.0
Q ss_pred HHHHHhCCHHHHHHHHHHCC---CCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHH---H
Q 009903 177 DSIRIMGDKSTARETMKNAG---VPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKL---L 250 (523)
Q Consensus 177 ~~~~~~~dK~~~r~~l~~~G---ip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~---~ 250 (523)
.....+.||+..|+.+++.+ .-+|-. ...++.+++. .+.++-++||||.+|+|+..+....+..+...+ +
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll--~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~ 88 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLL--GVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKL 88 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECcee--ecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHH
Confidence 44667889999999999986 333433 5667777663 245677899999999999888876654443333 3
Q ss_pred HHHHHHHHHhc--------CCCcEEEeeccCCC-----cEEEEEEEEeCCCcEEEEeee-c------eeeeecCc---ee
Q 009903 251 QQAKSEAAAAF--------GNDGVYLEKYVQNP-----RHIEFQVLADKYGNVVHFGER-D------CSIQRRNQ---KL 307 (523)
Q Consensus 251 ~~~~~~~~~~~--------~~~~~lvEefI~G~-----~e~sv~v~~d~~g~v~~~~~~-~------~~~~~~~~---~~ 307 (523)
........... -...+|+|++|... .+|-+-++ +|++..+... + ........ ..
T Consensus 89 ~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF---~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~ 165 (239)
T PF14305_consen 89 NRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF---NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPF 165 (239)
T ss_pred HHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE---CCEEEEEEEEeCCCCCeEEEEECcccCCCcc
Confidence 32222111000 13589999999761 34555555 3443333111 0 00000000 00
Q ss_pred eEec--CCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecCCCCC
Q 009903 308 LEEA--PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE 365 (523)
Q Consensus 308 ~~~~--p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR~~g~ 365 (523)
.... ....-.++..++|.++|+++.+-+. .+.|||..++++ +||-|+...+++|
T Consensus 166 ~~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~~~~-iyFGElTf~p~~G 221 (239)
T PF14305_consen 166 RSDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNVDGK-IYFGELTFTPGAG 221 (239)
T ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEeCCc-EEEEeeecCCCCc
Confidence 0001 1111345667888888888776543 679999888665 9999999999877
No 104
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.30 E-value=1.2e-06 Score=81.92 Aligned_cols=103 Identities=27% Similarity=0.410 Sum_probs=74.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCc-EEEEeCCCCCCCc----eEEeCCHHHHHHHHHHHHHHHHH
Q 009903 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGRG----MRLAKEPDEFVKLLQQAKSEAAA 259 (523)
Q Consensus 185 K~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P-~VvKP~~g~gs~G----v~~v~~~~el~~~~~~~~~~~~~ 259 (523)
-+..+++|+++|||+|++ .++.+.+++.+.++++|.+ +||||---.|++| |.+++|++|..++.+++......
T Consensus 4 EyqaK~ll~~~gi~vp~g--~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRG--VVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SE--EEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467889999999999999 8899999999999999874 7999977776665 99999999999988876432110
Q ss_pred -------hcCCCcEEEeeccCCCcEEEEEEEEeCCCc
Q 009903 260 -------AFGNDGVYLEKYVQNPRHIEFQVLADKYGN 289 (523)
Q Consensus 260 -------~~~~~~~lvEefI~G~~e~sv~v~~d~~g~ 289 (523)
...-..++||++++-.+||-+.+..|+...
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESR 118 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTT
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCC
Confidence 001237899999999899999999886544
No 105
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.25 E-value=5.7e-05 Score=77.57 Aligned_cols=106 Identities=14% Similarity=0.269 Sum_probs=84.1
Q ss_pred HHHHHHHHHHC-----CCCCCCCCCccC-CCHHHHHHHHHh---cCCc-EEEEeCCCCCCCc----eEEeCCHHHHHHHH
Q 009903 185 KSTARETMKNA-----GVPTVPGSDGLL-QSTEEAVKLADE---LGFP-VMIKATAGGGGRG----MRLAKEPDEFVKLL 250 (523)
Q Consensus 185 K~~~r~~l~~~-----Gip~p~~~~~~~-~s~~e~~~~~~~---~g~P-~VvKP~~g~gs~G----v~~v~~~~el~~~~ 250 (523)
-+..+++|+++ |||+|.. ..+ .+.+++.+++++ ++.| +||||---.|++| |.+++|++|+.++.
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~--~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a 85 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIR--SAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFV 85 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCC--eeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHH
Confidence 35567888887 9999998 666 999999999988 7764 6999988887776 89999999999999
Q ss_pred HHHHHHHH-----HhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEE
Q 009903 251 QQAKSEAA-----AAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293 (523)
Q Consensus 251 ~~~~~~~~-----~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~ 293 (523)
+++..... .. .-..+|||++++-.+||-+.++.|+....+.+
T Consensus 86 ~~~Lg~~l~t~g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~ 132 (423)
T PLN02235 86 KERLGKEVEMGGCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGCSISF 132 (423)
T ss_pred HHHhCCceEecCCCc-cEeEEEEEecCCCcceEEEEEEEecCCCEEEE
Confidence 88765431 00 12478999999988999999998877665444
No 106
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=98.24 E-value=1.1e-05 Score=65.92 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=64.6
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcC-C-cEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANRGEIAVRVIRTAHEMG-I-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G-~-~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|||||+|+|.--..++.++.+.- . ++++. ..++ ......+.+.+ +..|.+.++++++++++|.|++
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~a--PGN~---G~~~~~~~~~~-------~~~d~~~l~~~a~~~~idlvvv 68 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVA--PGNP---GTAELGKNVPI-------DITDPEELADFAKENKIDLVVV 68 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEE--E--T---TGGGTSEEE-S--------TT-HHHHHHHHHHTTESEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEe--CCCH---HHHhhceecCC-------CCCCHHHHHHHHHHcCCCEEEE
Confidence 58999999988888999998763 2 33333 2221 22222233433 3778999999999999999998
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHH
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRI 181 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~ 181 (523)
+.+..-. ..+++.+++.|++++||+.+++++
T Consensus 69 GPE~pL~-~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 69 GPEAPLV-AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp SSHHHHH-TTHHHHHHHTT-CEES--HHHHHH
T ss_pred CChHHHH-HHHHHHHHHCCCcEECcCHHHHhc
Confidence 8732111 256799999999999999988765
No 107
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=6.8e-05 Score=73.21 Aligned_cols=202 Identities=15% Similarity=0.167 Sum_probs=124.8
Q ss_pred HHcCCCEEEeCCCccc----cc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHH----CC---CCCCCCCCccC
Q 009903 140 ISRGCTMLHPGYGFLA----EN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKN----AG---VPTVPGSDGLL 207 (523)
Q Consensus 140 ~~~~id~Vi~~~g~~~----e~-~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~----~G---ip~p~~~~~~~ 207 (523)
+..++|.|+...+.++ |+ -.+..-+...|||.+ ++..++..+.||-+....|.+ .| +|..+.. ..
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt--~y 228 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQT--FY 228 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceee--ec
Confidence 5577899988754322 12 244556778899987 899999999999988776654 44 4444331 11
Q ss_pred CCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCC
Q 009903 208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY 287 (523)
Q Consensus 208 ~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~ 287 (523)
-+-.+ ....-.||+|||-..+..|.|-.+|+|.+|+.+.-.-+.-. ....-+|.||+...++.++-++..
T Consensus 229 PnHK~---m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~------~Tyat~epFiDaKYDiriQKIG~n- 298 (488)
T KOG3895|consen 229 PNHKE---MLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT------KTYATAEPFIDAKYDIRIQKIGHN- 298 (488)
T ss_pred CCchh---hccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHHH------hhhhhccccccccceeehhhhhhh-
Confidence 12121 12234599999999999999999999999887654432211 256789999998777777766542
Q ss_pred CcEEEEeeeceeeeecCceeeEecCCCCCCH-HHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEecC
Q 009903 288 GNVVHFGERDCSIQRRNQKLLEEAPSPALTP-ELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTR 361 (523)
Q Consensus 288 g~v~~~~~~~~~~~~~~~~~~~~~p~~~l~~-~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNpR 361 (523)
...+..+. + ..+.+.... .+. |.. ..-++.+.++..+.+-+|---++.|+....++|+=|++|||--
T Consensus 299 --YKaymRts--I-sgnWKtNtG-Sam-LEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~ 366 (488)
T KOG3895|consen 299 --YKAYMRTS--I-SGNWKTNTG-SAM-LEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDS 366 (488)
T ss_pred --HHHHhhhh--h-ccCcccCch-HHH-HHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeeccc
Confidence 22222111 0 011111100 000 111 1112333444445555565568899999999999999999873
No 108
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.74 E-value=0.00021 Score=71.51 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=23.7
Q ss_pred cEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccC
Q 009903 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273 (523)
Q Consensus 223 P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~ 273 (523)
-+|+||..++.|+|+.++++.+++.+. .......++||+||+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~ 108 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIE 108 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--S
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccC
Confidence 489999999999999999999988754 011357999999996
No 109
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.60 E-value=7.9e-05 Score=62.44 Aligned_cols=114 Identities=16% Similarity=0.252 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHHHHcCCcEEEEecCCC-CCCccccccCeeEEcCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCccc
Q 009903 79 RGEIAVRVIRTAHEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLHPGYGFLA 155 (523)
Q Consensus 79 ~g~~~~~vi~aa~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~~~~~~~~~~~~~~--~~l~~~~~~~~id~Vi~~~g~~~ 155 (523)
++.+++++.+-|++.|++++++..... .......++|+++.++ ++.++ +.+.+...+ -++|+.-++++.
T Consensus 5 aSHSALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d------~f~di~~~~~q~~L~~--~N~I~VPhgSfv 76 (124)
T PF06849_consen 5 ASHSALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLD------SFSDILSEEVQEKLRE--MNAIFVPHGSFV 76 (124)
T ss_dssp SSTTHHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEES------SCGHCCSHHHHHHHHH--TTEEE--BTTHH
T ss_pred echHHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeC------CHHHHHhHHHHHHHHH--CCeEEecCCCee
Confidence 456799999999999999999864322 1222334789999875 23221 234444433 467777677665
Q ss_pred ccHHHHHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 009903 156 ENAVFVEMCRE-HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (523)
Q Consensus 156 e~~~~a~~~~~-~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~ 202 (523)
+.... +.++. .-+|++| +...++.-.|...-+++|+++|||.|+.
T Consensus 77 ~Y~G~-d~ie~~~~vP~FG-NR~lLrwEseR~~~~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 77 AYVGY-DRIENEFKVPIFG-NRNLLRWESERDKERNLLEKAGIPMPRK 122 (124)
T ss_dssp HHH-H-HHHHHT-SS-EES--CCGGHCCCSHHHHHHHHHHTT-BB--B
T ss_pred EeecH-HHHhhcCCCCeec-ChHHHHhhhhhhhHHHHHHHcCCCCCcc
Confidence 54433 34454 8899998 5778888889999999999999999975
No 110
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.48 E-value=0.00078 Score=60.50 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=61.0
Q ss_pred CcEEEeeccCCCcEEEEEEEEeC-CC--cEEEEeeeceeeeecC----------------ceeeEecCCCCCCHHHHHHH
Q 009903 264 DGVYLEKYVQNPRHIEFQVLADK-YG--NVVHFGERDCSIQRRN----------------QKLLEEAPSPALTPELRKAM 324 (523)
Q Consensus 264 ~~~lvEefI~G~~e~sv~v~~d~-~g--~v~~~~~~~~~~~~~~----------------~~~~~~~p~~~l~~~~~~~l 324 (523)
.++.||||+-| ..+.+..+... .+ ++..+..+-.+..+.. .......|.. +.+.+..++
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESLLPKV 98 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGGHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhhHHHH
Confidence 68999999999 78888877643 22 2333322211111110 0122233444 778888888
Q ss_pred HHHHHHHHHHc------CCccccEEEEEEeCCCCEEEEEEecCCCCC
Q 009903 325 GDAAVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTRIQVE 365 (523)
Q Consensus 325 ~~~a~~~~~al------g~~G~~~vE~~~~~~G~~~liEiNpR~~g~ 365 (523)
.+++.+++++. |+.|++.+|.++|++.++++.|+.+|+.||
T Consensus 99 fe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccCC
Confidence 88888777664 788999999999999999999999999876
No 111
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=97.24 E-value=0.0037 Score=65.16 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=99.4
Q ss_pred CCccEEEEEcCcHH-----HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 69 CRQEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 69 ~~~k~ILi~g~g~~-----~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
...++|.|+.--.. =..+.+.+.+.|++++++++.. .++.+...+.+ -.-++.|-+.+-..
T Consensus 183 ~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~~------L~y~~g~L~~~-------~~~ID~VyRR~Vt~- 248 (445)
T PF14403_consen 183 VEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPRD------LEYRDGRLYAG-------GRPIDAVYRRFVTS- 248 (445)
T ss_pred CCCCcEEEEecccCCccchHHHHHHHHHHcCCceEecChHH------ceecCCEEEEC-------CEeeehhhHhhhhH-
Confidence 33567888752111 2457788899999999995322 23334333322 11112222221110
Q ss_pred CCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC-------------CCCCCCccCCC-
Q 009903 144 CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP-------------TVPGSDGLLQS- 209 (523)
Q Consensus 144 id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip-------------~p~~~~~~~~s- 209 (523)
| ++..++ +...+.++...--+.++| +-...++.||..+.-+.....-. +|-+ ..++.
T Consensus 249 -e-~l~~~d---~~~~li~Ay~~~av~~vg--sfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T--~~l~~~ 319 (445)
T PF14403_consen 249 -E-LLERYD---EVQPLIQAYRDGAVCMVG--SFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWT--RLLTAG 319 (445)
T ss_pred -H-hhhccc---cchHHHHHHhcCCeEEec--chhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCce--EEEcCc
Confidence 0 111111 223344444444455553 45566677776655433222111 3444 34443
Q ss_pred -------HHHHHHHHHhcCCcEEEEeCCCCCCCceEE--eCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 009903 210 -------TEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274 (523)
Q Consensus 210 -------~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~--v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 274 (523)
..++.+++....--+|+||.++.||+||++ =.++++++++++++. +.++|+|||+.-
T Consensus 320 ~~~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~~ 385 (445)
T PF14403_consen 320 RTTYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVRP 385 (445)
T ss_pred cccccccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEecC
Confidence 445666655555679999999999999997 467888998888764 368999999986
No 112
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=96.73 E-value=0.015 Score=56.31 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=64.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+++|||+|+..-|+.+++.+.+.|+.+++-....... .... ...+..+ ...+.+.+.++++++++++|+=
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~--~~~~-~~~v~~G------~l~~~~~l~~~l~~~~i~~VID 71 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG--PADL-PGPVRVG------GFGGAEGLAAYLREEGIDLVID 71 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC--cccC-CceEEEC------CCCCHHHHHHHHHHCCCCEEEE
Confidence 57889999999999999999999999887764333222 1111 2223333 2338999999999999999885
Q ss_pred C-CCccccc-HHHHHHHHHcCCcee
Q 009903 150 G-YGFLAEN-AVFVEMCREHGINFI 172 (523)
Q Consensus 150 ~-~g~~~e~-~~~a~~~~~~gl~~~ 172 (523)
. +.|..+. ....++++++|+|++
T Consensus 72 ATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 72 ATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CCCccHHHHHHHHHHHHHHhCCcEE
Confidence 4 4343332 245567777777765
No 113
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.62 E-value=0.025 Score=53.97 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=83.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
++++|+|+|+..-++.+++.+...+..+++.........+....+. .... .+.+.+.+.++.+++++|.|+=
T Consensus 1 ~~~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~-~~~~-------G~l~~e~l~~~l~e~~i~llID 72 (257)
T COG2099 1 SMMRILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP-VRVG-------GFLGAEGLAAFLREEGIDLLID 72 (257)
T ss_pred CCceEEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhccCC-eeec-------CcCCHHHHHHHHHHcCCCEEEE
Confidence 3678999999999999999999999665555433333344444444 2222 4889999999999999998884
Q ss_pred C-CCccccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC--CCCCCccCCCHHHHHHHHHhcC
Q 009903 150 G-YGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT--VPGSDGLLQSTEEAVKLADELG 221 (523)
Q Consensus 150 ~-~g~~~e~-~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~--p~~~~~~~~s~~e~~~~~~~~g 221 (523)
. +-|.... ....+++++.|+|++- +++-+... +++ ..+.|.+|+.+.+.+.+
T Consensus 73 ATHPyAa~iS~Na~~aake~gipy~r------------------~eRP~~~~~gd~~--~~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 73 ATHPYAARISQNAARAAKETGIPYLR------------------LERPPWAPNGDNW--IEVADIEEAAEAAKQLG 128 (257)
T ss_pred CCChHHHHHHHHHHHHHHHhCCcEEE------------------EECCccccCCCce--EEecCHHHHHHHHhccC
Confidence 4 3332222 2556778888887752 22222222 344 67888888888777665
No 114
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.58 E-value=0.025 Score=49.15 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEeCCCcEEEEeeeceeee
Q 009903 222 FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301 (523)
Q Consensus 222 ~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~ 301 (523)
.|++|||....-.---.++.+.+++...- ....+..+++.+.++-..||.+-++ +|+++.....
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~--------~~~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~Y----- 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG--------SLDPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSPY----- 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC--------CCCCCceEEEeceEeeeeeEEEEEE---CCEEEEEeec-----
Confidence 48999999855433333555555554111 1113578999999998889998877 4577776432
Q ss_pred ecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCc-cccEEEEEEeCCCCEEEEEEecCCC
Q 009903 302 RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQ 363 (523)
Q Consensus 302 ~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~-G~~~vE~~~~~~G~~~liEiNpR~~ 363 (523)
... .....+. ++.+.+.+.+++..-. -.+.+|+-++++|.++|||+|+=-+
T Consensus 66 ~~~-------~~~~~~~----~~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 66 RGD-------WDLEPDP----DVVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred CCC-------cccCCCH----HHHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCccc
Confidence 111 1111233 3344444444433322 5778999999898899999999654
No 115
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.53 E-value=0.019 Score=55.93 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=61.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG- 150 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~- 150 (523)
|+|||+|+..-|+.+++.+.+.|++|++...+..............+..+ ..+.+.+.+++++.++|.|+-.
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g-------~l~~~~l~~~l~~~~i~~VIDAt 73 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG-------ALDPQELREFLKRHSIDILVDAT 73 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC-------CCCHHHHHHHHHhcCCCEEEEcC
Confidence 47999998545999999999999998887544432222222211233333 5677888899999999988844
Q ss_pred CCccccc-HHHHHHHHHcCCcee
Q 009903 151 YGFLAEN-AVFVEMCREHGINFI 172 (523)
Q Consensus 151 ~g~~~e~-~~~a~~~~~~gl~~~ 172 (523)
+.|..+. ....+.++++|+|++
T Consensus 74 HPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 74 HPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred CHHHHHHHHHHHHHHHHhCCcEE
Confidence 3222222 244566777777665
No 116
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.04 E-value=0.026 Score=58.02 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=80.4
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcC-CcEEEEecCCCCCCcccccc---CeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLA---DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G-~~vi~v~~~~~~~~~~~~~a---d~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
|++|||+|+|..|..++..|.+.| .+|++.+.+.+......... -+...+| ..+.+.+.+++++. |+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD-------~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD-------AADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec-------ccChHHHHHHHhcC--CE
Confidence 578999999999999999999998 89998864433222111111 2234443 67888899988874 88
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~ 202 (523)
|+...... -+..+.+.|.+.|++++-.+. ...+.+..++.+.++|+-....
T Consensus 72 VIn~~p~~-~~~~i~ka~i~~gv~yvDts~----~~~~~~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 72 VINAAPPF-VDLTILKACIKTGVDYVDTSY----YEEPPWKLDEEAKKAGITAVLG 122 (389)
T ss_pred EEEeCCch-hhHHHHHHHHHhCCCEEEccc----CCchhhhhhHHHHHcCeEEEcc
Confidence 88764332 234778899999998873221 1122477888889998765543
No 117
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.94 E-value=0.015 Score=49.46 Aligned_cols=98 Identities=26% Similarity=0.288 Sum_probs=58.7
Q ss_pred cEEEEEcCc----HHHHHHHHHHHHcCCcEEEEecCCCCCC---cccccc------CeeEEcCCCCCCCCCCCHHHHHHH
Q 009903 72 EKILVANRG----EIAVRVIRTAHEMGIPCVAVYSTIDKDA---LHVKLA------DESVCIGEAPSSQSYLLIPNVLSA 138 (523)
Q Consensus 72 k~ILi~g~g----~~~~~vi~aa~~~G~~vi~v~~~~~~~~---~~~~~a------d~~~~~~~~~~~~~~~~~~~l~~~ 138 (523)
|+|.|+|.+ ..+..+++.+++.|++++.+++..+... .+..+. |-.+.+- ......++++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~------~~~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV------PPDKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-------HHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc------CHHHHHHHHHH
Confidence 579999954 4689999999999999999966543211 112222 2222211 12234556666
Q ss_pred HHHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHH
Q 009903 139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPD 177 (523)
Q Consensus 139 ~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~ 177 (523)
+.+.++..++...+. +...+.+.+++.|++++||+--
T Consensus 75 ~~~~g~~~v~~~~g~--~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 75 AAALGVKAVWLQPGA--ESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHT-SEEEE-TTS----HHHHHHHHHTT-EEEESS-H
T ss_pred HHHcCCCEEEEEcch--HHHHHHHHHHHcCCEEEeCCcc
Confidence 777789988877663 5568889999999999987643
No 118
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.57 E-value=0.076 Score=53.51 Aligned_cols=160 Identities=18% Similarity=0.108 Sum_probs=91.7
Q ss_pred CCCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccc-cCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 68 ~~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
..+.++|+|+|.|..|...++-|+.+|.+|++++.+.+......++ +|..+.- .+.+.+.. +++. +|+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~---------~~~~~~~~-~~~~-~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINS---------SDSDALEA-VKEI-ADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEc---------CCchhhHH-hHhh-CcE
Confidence 3447899999999999999999999999999998766666556777 5655531 12222222 2222 899
Q ss_pred EEeCCCcccccHHHHHHHHHcCC-ceeCCCH-HHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcE
Q 009903 147 LHPGYGFLAENAVFVEMCREHGI-NFIGPNP-DSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl-~~~g~~~-~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~ 224 (523)
|+-+.+ ........+.+...|. -++|... .... .-..+.-++.+.-|- -+......+.+++.+|+.+.+.
T Consensus 233 ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~---~~~~~~li~~~~~i~--GS~~g~~~d~~e~l~f~~~g~I-- 304 (339)
T COG1064 233 IIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIP---LLPAFLLILKEISIV--GSLVGTRADLEEALDFAAEGKI-- 304 (339)
T ss_pred EEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccC---CCCHHHhhhcCeEEE--EEecCCHHHHHHHHHHHHhCCc--
Confidence 997654 2222345566666663 3345432 1111 111112222232222 2111333455666677666653
Q ss_pred EEEeCCCCCCCceEEeCCHHHHHHHHHHHHH
Q 009903 225 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKS 255 (523)
Q Consensus 225 VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~ 255 (523)
||... .....+|..++++++.+
T Consensus 305 --kp~i~-------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 305 --KPEIL-------ETIPLDEINEAYERMEK 326 (339)
T ss_pred --eeeEE-------eeECHHHHHHHHHHHHc
Confidence 22210 24568888888888754
No 119
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.51 E-value=0.13 Score=50.95 Aligned_cols=90 Identities=22% Similarity=0.271 Sum_probs=69.8
Q ss_pred ccCCCHHHHHHHHHhc--CCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEE
Q 009903 205 GLLQSTEEAVKLADEL--GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV 282 (523)
Q Consensus 205 ~~~~s~~e~~~~~~~~--g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v 282 (523)
..+.|.+|+..+...+ +-|+=+||..+.||+|..++.+.++|+.++..+..... ....+++|+=|....-|||--
T Consensus 118 ~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l---~~~GlVLE~~L~~~~T~SVGq 194 (355)
T PF11379_consen 118 YTVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAEL---ARHGLVLEEDLEEVVTYSVGQ 194 (355)
T ss_pred ccccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHH---HhCCEEEecccCCCceeeEEE
Confidence 4678889888877765 56999999999999999999999999999987644332 236799999999977888887
Q ss_pred EEeCCCcEEEEeeece
Q 009903 283 LADKYGNVVHFGERDC 298 (523)
Q Consensus 283 ~~d~~g~v~~~~~~~~ 298 (523)
+.-+ |..+.+.-+++
T Consensus 195 v~v~-g~~~SY~GtQ~ 209 (355)
T PF11379_consen 195 VRVA-GLVASYYGTQR 209 (355)
T ss_pred EEEC-CEEEEEeeEee
Confidence 7653 35555544443
No 120
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=95.32 E-value=0.12 Score=50.28 Aligned_cols=94 Identities=21% Similarity=0.183 Sum_probs=58.9
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccc-cCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
|+|||+|+..-|+.+++.|.+.|+ +++-............. ....+.++ ...+.+.+.+++++++++.|+=.
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G------~lg~~~~l~~~l~~~~i~~vIDA 73 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVG------RLGDEEGLAEFLRENGIDAVIDA 73 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEEC------CCCCHHHHHHHHHhCCCcEEEEC
Confidence 689999999999999999999998 43322111111111111 11233343 23389999999999999998843
Q ss_pred -CCccccc-HHHHHHHHHcCCcee
Q 009903 151 -YGFLAEN-AVFVEMCREHGINFI 172 (523)
Q Consensus 151 -~g~~~e~-~~~a~~~~~~gl~~~ 172 (523)
+-|..+. ....+++++.|+|++
T Consensus 74 THPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 74 THPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CCchHHHHHHHHHHHHhhcCcceE
Confidence 3332222 244566677777665
No 121
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.048 Score=52.22 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=67.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcccc--ccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK--LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~--~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+++|+|.|..|..+++.|.+.|+.|++++.+.+....... +....+.. +-.+.+.|.++ --..+|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~g-------d~t~~~~L~~a-gi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIG-------DATDEDVLEEA-GIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEe-------cCCCHHHHHhc-CCCcCCEEEE
Confidence 57999999999999999999999999999766554333222 33344432 24455555443 3356888887
Q ss_pred CCCcccccHHHHHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHHCC
Q 009903 150 GYGFLAENAVFVEMCRE-HGINFIGPNPDSIRIMGDKSTARETMKNAG 196 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~-~gl~~~g~~~~~~~~~~dK~~~r~~l~~~G 196 (523)
..+....+.-+..++.+ +|++. .+..++|....+ .+.+.|
T Consensus 73 ~t~~d~~N~i~~~la~~~~gv~~------viar~~~~~~~~-~~~~~g 113 (225)
T COG0569 73 ATGNDEVNSVLALLALKEFGVPR------VIARARNPEHEK-VLEKLG 113 (225)
T ss_pred eeCCCHHHHHHHHHHHHhcCCCc------EEEEecCHHHHH-HHHHcC
Confidence 76543233333344333 55543 345555655544 355555
No 122
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.05 E-value=0.1 Score=51.22 Aligned_cols=71 Identities=13% Similarity=0.014 Sum_probs=51.1
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcccccc-CeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~a-d~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
++|||+|+ |.+|-+.+.++.+.|++|++++.-.........-. -+++.- +..|.+.+.++..+++||+|+=
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~g-------Di~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEG-------DLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEe-------ccccHHHHHHHHHhcCCCEEEE
Confidence 57999975 88999999999999999999963222211111111 133432 5788889999999999999983
No 123
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.85 E-value=0.19 Score=50.71 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=45.2
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
|+|+|+|+ |..|..+++.|.+.|++|+++..+...........-+.+.. +..+.+.+.+.++ ++|+|+-.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~-------Dl~d~~~l~~al~--g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYG-------DLSLPETLPPSFK--GVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEEC-------CCCCHHHHHHHHC--CCCEEEEC
Confidence 37999996 88999999999999999998864332111000111122222 3566777766664 58988754
No 124
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=94.59 E-value=0.16 Score=55.21 Aligned_cols=202 Identities=13% Similarity=0.173 Sum_probs=109.6
Q ss_pred CCEEEeCC--CcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCC---HHHHHHHHH
Q 009903 144 CTMLHPGY--GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS---TEEAVKLAD 218 (523)
Q Consensus 144 id~Vi~~~--g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s---~~e~~~~~~ 218 (523)
+|.+|..+ ||..+ -+..-.++.-|++-++..--....|+....++|++.||++|++ ..++. -++...+++
T Consensus 91 CdcLIsFhSsGFPLd---KAiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRy--a~~nr~~pn~~~~~lie 165 (1018)
T KOG1057|consen 91 CDCLISFHSKGFPLD---KAVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRY--AILNRDPPNPKLCNLIE 165 (1018)
T ss_pred cceEEEeccCCCChH---HHHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCcee--EeecCCCCChHHhhhhc
Confidence 57666643 22111 2222233445777789999999999999999999999999987 44432 122223332
Q ss_pred ----------hcCCcEEEEeCCCCCCCceEEe--CC-HHHHHHHHHHHHHHHHH------hcCCCcEEEeeccCCCcEEE
Q 009903 219 ----------ELGFPVMIKATAGGGGRGMRLA--KE-PDEFVKLLQQAKSEAAA------AFGNDGVYLEKYVQNPRHIE 279 (523)
Q Consensus 219 ----------~~g~P~VvKP~~g~gs~Gv~~v--~~-~~el~~~~~~~~~~~~~------~~~~~~~lvEefI~G~~e~s 279 (523)
.+..|+|=||++|-. ..|++- .+ -.--++.|.++-..+.. -...+.+|-|||++- .--.
T Consensus 166 ~eD~vEVnGevf~KPFVEKPVs~ED-HNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMpt-dgtD 243 (1018)
T KOG1057|consen 166 GEDHVEVNGEVFQKPFVEKPVSAED-HNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPT-DGTD 243 (1018)
T ss_pred CCCeEEEcceeccCCcccCCCCccc-ccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCC-CCcc
Confidence 245799999997642 122221 11 11223333333211100 001368999999975 1223
Q ss_pred EEEEEeCCCcEEEEeee------ceeeeecCceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCE
Q 009903 280 FQVLADKYGNVVHFGER------DCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSF 353 (523)
Q Consensus 280 v~v~~d~~g~v~~~~~~------~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~ 353 (523)
|-++.-| .-....+. +..+.++........|.. +++... .+|.+++.|++- -++++|+.. .+|+-
T Consensus 244 VKvYTVG--p~YaHAEaRKSPvvDGkV~Rns~GKEvRYpv~-Ls~~EK----~iA~KVciAF~Q-~VCGFDLLR-a~G~S 314 (1018)
T KOG1057|consen 244 VKVYTVG--PDYAHAEARKSPVVDGKVERNSDGKEVRYPVI-LNSSEK----QIARKVCIAFKQ-TVCGFDLLR-ANGKS 314 (1018)
T ss_pred ceEEeeC--cchhhhhhccCccccceeeecCCCceeeceee-cChhhH----HHHhHHHhhccc-cccchHHhh-cCCce
Confidence 3333322 11111111 111222211111122332 555443 678888888874 577788865 57889
Q ss_pred EEEEEecC
Q 009903 354 YFMEMNTR 361 (523)
Q Consensus 354 ~liEiNpR 361 (523)
|+++||.-
T Consensus 315 YVcDVNGf 322 (1018)
T KOG1057|consen 315 YVCDVNGF 322 (1018)
T ss_pred EEEeccce
Confidence 99999964
No 125
>PLN00016 RNA-binding protein; Provisional
Probab=94.55 E-value=0.19 Score=52.03 Aligned_cols=98 Identities=11% Similarity=0.147 Sum_probs=57.8
Q ss_pred cCCCccEEEEE----cC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-----c---cccC-eeEEcCCCCCCCCCCCH
Q 009903 67 VTCRQEKILVA----NR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-----V---KLAD-ESVCIGEAPSSQSYLLI 132 (523)
Q Consensus 67 ~~~~~k~ILi~----g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-----~---~~ad-~~~~~~~~~~~~~~~~~ 132 (523)
...|+++|||+ |+ |.+|..+++.|.+.|++|+++.......... . .+.. ....+ ..|.
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v--------~~D~ 119 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTV--------WGDP 119 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEE--------EecH
Confidence 45567899999 76 7789999999999999999996443221100 0 0000 01111 1244
Q ss_pred HHHHHHHHHcCCCEEEeCCCcccc-cHHHHHHHHHcCCc-ee
Q 009903 133 PNVLSAAISRGCTMLHPGYGFLAE-NAVFVEMCREHGIN-FI 172 (523)
Q Consensus 133 ~~l~~~~~~~~id~Vi~~~g~~~e-~~~~a~~~~~~gl~-~~ 172 (523)
.++.++....++|.|+-..+...+ ...+.+.+.+.|+. ++
T Consensus 120 ~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 120 ADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred HHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 445455544679998865432111 13556777777873 44
No 126
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.23 E-value=0.21 Score=48.53 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=32.0
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
+..+++|+|+|..+..+++-|+.+||+|+++++.++
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457899999999999999999999999999975543
No 127
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.11 E-value=0.063 Score=59.26 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=71.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
.++|+|+|.|..|..+++.+.+.|+++++++.|++............+ .+ |..+. ++++.+.-.+.|+++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~-~G------Dat~~-~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVY-YG------DATQL-ELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEE-Ee------eCCCH-HHHHhcCCccCCEEEEE
Confidence 578999999999999999999999999999766654333333322333 33 23343 44444444567888876
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT 199 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~ 199 (523)
.+....+......++++ .|+...+.+++|..... .|++.|...
T Consensus 472 ~~d~~~n~~i~~~~r~~-----~p~~~IiaRa~~~~~~~-~L~~~Ga~~ 514 (601)
T PRK03659 472 CNEPEDTMKIVELCQQH-----FPHLHILARARGRVEAH-ELLQAGVTQ 514 (601)
T ss_pred eCCHHHHHHHHHHHHHH-----CCCCeEEEEeCCHHHHH-HHHhCCCCE
Confidence 54322222333444443 24445566677776555 466777764
No 128
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.39 Score=50.16 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCCCCccCCCHHHHHHHHHhcC-CcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccC
Q 009903 200 VPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273 (523)
Q Consensus 200 p~~~~~~~~s~~e~~~~~~~~g-~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~ 273 (523)
|.+| .+..+.+++.+.+++.. --+||||..++.|.|+.+++...++-. +.+.+||+||+
T Consensus 284 Prty-ilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yie 343 (662)
T KOG2156|consen 284 PRTY-ILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIE 343 (662)
T ss_pred ceee-eccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhh
Confidence 4444 68889999999888743 338899999999999999988877642 35677788775
No 129
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.76 E-value=0.18 Score=47.50 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=29.9
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.++|||+|+|..|.+-++.+.+.|.+|+++.++
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999543
No 130
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.57 E-value=0.42 Score=45.67 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=76.6
Q ss_pred EEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCc-c-ccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 74 ILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-H-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 74 ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~-~-~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
|+|+|+ |..|..++++|.+.|++|.++..+.+.... . ...--+.+.. ++.+.+.|.+..+ ++|.|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~-------d~~~~~~l~~al~--g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEA-------DYDDPESLVAALK--GVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES--------TT-HHHHHHHHT--TCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeec-------ccCCHHHHHHHHc--CCceEEee
Confidence 789996 899999999999999999999654421111 1 1112234433 4778888888876 69998876
Q ss_pred CCccccc-----HHHHHHHHHcCCceeCC-----CH-------HHHHHhCCHHHHHHHHHHCCCCC
Q 009903 151 YGFLAEN-----AVFVEMCREHGINFIGP-----NP-------DSIRIMGDKSTARETMKNAGVPT 199 (523)
Q Consensus 151 ~g~~~e~-----~~~a~~~~~~gl~~~g~-----~~-------~~~~~~~dK~~~r~~l~~~Gip~ 199 (523)
.+...+. ..+.+++.+.|++.+-+ .. -.......|....+.+++.|++.
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~ 137 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY 137 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence 6533121 35677888888754421 11 13555667888899999998774
No 131
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.53 E-value=0.42 Score=55.41 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=88.9
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHc-CCc-------------EEEEecCCCCCCccccccCe-----eEEcCCCCCCCCC
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEM-GIP-------------CVAVYSTIDKDALHVKLADE-----SVCIGEAPSSQSY 129 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~-G~~-------------vi~v~~~~~~~~~~~~~ad~-----~~~~~~~~~~~~~ 129 (523)
..+|+|+|+|+|.+|..+++.+.+. +++ |.+.+.+.. . ...+++. .+.+ ++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~--~-a~~la~~~~~~~~v~l-------Dv 636 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLK--D-AKETVEGIENAEAVQL-------DV 636 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHH--H-HHHHHHhcCCCceEEe-------ec
Confidence 4478999999999999999999775 333 555532221 1 1122221 2333 26
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCC
Q 009903 130 LLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS 209 (523)
Q Consensus 130 ~~~~~l~~~~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s 209 (523)
.|.+.+.++++. +|+|+.+..+. -+..++..+.+.|.+++.-+. ...+-..+.+.++++|+..-... ..--.
T Consensus 637 ~D~e~L~~~v~~--~DaVIsalP~~-~H~~VAkaAieaGkHvv~eky----~~~e~~~L~e~Ak~AGV~~m~e~-GlDPG 708 (1042)
T PLN02819 637 SDSESLLKYVSQ--VDVVISLLPAS-CHAVVAKACIELKKHLVTASY----VSEEMSALDSKAKEAGITILCEM-GLDPG 708 (1042)
T ss_pred CCHHHHHHhhcC--CCEEEECCCch-hhHHHHHHHHHcCCCEEECcC----CHHHHHHHHHHHHHcCCEEEECC-ccCHH
Confidence 778888887764 99999875432 357888999999998875441 11223456677888998865542 22222
Q ss_pred HHH--HHHHHHhc----CCcEEEEeCCCC
Q 009903 210 TEE--AVKLADEL----GFPVMIKATAGG 232 (523)
Q Consensus 210 ~~e--~~~~~~~~----g~P~VvKP~~g~ 232 (523)
.+. +.+.+++. |-...++...|+
T Consensus 709 id~~lA~~~Id~~~~~~GkI~s~~s~~GG 737 (1042)
T PLN02819 709 IDHMMAMKMIDDAHERGGKVKSFTSYCGG 737 (1042)
T ss_pred HHHHHHHHHHHhhcccCCcEEEEEEEEcC
Confidence 333 33444444 656666655554
No 132
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.5 Score=50.16 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=38.6
Q ss_pred CCcEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhc-CCCcEEEeeccCC
Q 009903 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF-GNDGVYLEKYVQN 274 (523)
Q Consensus 221 g~P~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~-~~~~~lvEefI~G 274 (523)
....|+||...+-|+|++++++.+++.+.+...... ... .++.++++.||+-
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~--~s~~~~~~~vv~~yi~~ 251 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF--ISENNDEGYVVSAYIDR 251 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccc--ccccccccceeeeeccC
Confidence 357999999999999999999999998877432211 011 1467888888864
No 133
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.30 E-value=0.18 Score=50.18 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=44.1
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
|||||+|+ |..|..+.+.+++.|++++.++.. .+ +..+.+.+.++.++.++|.|+-+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~-------dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------DL-------DLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS--------TTSHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hc-------CCCCHHHHHHHHHHhCCCeEecc
Confidence 68999995 889999999999999998888322 12 25678899999999999999865
Q ss_pred C
Q 009903 151 Y 151 (523)
Q Consensus 151 ~ 151 (523)
-
T Consensus 59 a 59 (286)
T PF04321_consen 59 A 59 (286)
T ss_dssp -
T ss_pred c
Confidence 4
No 134
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.18 E-value=0.11 Score=43.06 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=50.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
.++|||+|+|..|.+-++.+.+.|.+++++.++. ...+..+.+.. ..+. +. -.+.+.|+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~~~~i~~~~----~~~~--~~------l~~~~lV~~a 67 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFSEGLIQLIR----REFE--ED------LDGADLVFAA 67 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHHHTSCEEEE----SS-G--GG------CTTESEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhhhhHHHHHh----hhHH--HH------HhhheEEEec
Confidence 5799999999999999999999999999996542 11111111110 0110 01 1346788877
Q ss_pred CCcccccHHHHHHHHHcCCcee
Q 009903 151 YGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.+-...+..+.+.+++.|+++-
T Consensus 68 t~d~~~n~~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 68 TDDPELNEAIYADARARGILVN 89 (103)
T ss_dssp SS-HHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHhhCCEEEE
Confidence 6533233566677788887653
No 135
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.17 E-value=0.18 Score=55.19 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=65.9
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
.+..+++|+|.|..|..+++.+++.|+++++++.+++......+. +.....+ |..+.+ +++.+.-.+.|+++
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-g~~~i~G------D~~~~~-~L~~a~i~~a~~vi 486 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-GIRAVLG------NAANEE-IMQLAHLDCARWLL 486 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-CCeEEEc------CCCCHH-HHHhcCccccCEEE
Confidence 456899999999999999999999999999997665443333332 2223232 344433 44444445688777
Q ss_pred eCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 009903 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip 198 (523)
...+...++......+.+.. ++...+.+..|.. -.+.+++.|+.
T Consensus 487 v~~~~~~~~~~iv~~~~~~~-----~~~~iiar~~~~~-~~~~l~~~Gad 530 (558)
T PRK10669 487 LTIPNGYEAGEIVASAREKR-----PDIEIIARAHYDD-EVAYITERGAN 530 (558)
T ss_pred EEcCChHHHHHHHHHHHHHC-----CCCeEEEEECCHH-HHHHHHHcCCC
Confidence 55432222222222222221 1223333445554 33446778765
No 136
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.13 E-value=0.45 Score=42.79 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=29.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.++|||+|+|..|.+.++.+.+.|++|+++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 5789999999999999999999999999994
No 137
>PRK05849 hypothetical protein; Provisional
Probab=93.08 E-value=5.7 Score=45.00 Aligned_cols=177 Identities=11% Similarity=0.215 Sum_probs=100.4
Q ss_pred HhCCHHHHHHHHHH--CCCCCCCCCCccC----CCHHHHHHHHHhc--CCcEEEEeCCCC------CCCceE--E--eCC
Q 009903 181 IMGDKSTARETMKN--AGVPTVPGSDGLL----QSTEEAVKLADEL--GFPVMIKATAGG------GGRGMR--L--AKE 242 (523)
Q Consensus 181 ~~~dK~~~r~~l~~--~Gip~p~~~~~~~----~s~~e~~~~~~~~--g~P~VvKP~~g~------gs~Gv~--~--v~~ 242 (523)
.+..|...-..|+. .|.++|+.+.... ++.+.+.+.+... +-|++|..+.-+ +.-|.+ + |..
T Consensus 7 ~~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~ 86 (783)
T PRK05849 7 FFQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNA 86 (783)
T ss_pred ccchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCC
Confidence 45678888888888 8999999853222 2344444433332 468999976422 333332 2 333
Q ss_pred H--HHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEE-EeC-CC---cEEEEeee---ceee-eec--CceeeE
Q 009903 243 P--DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVL-ADK-YG---NVVHFGER---DCSI-QRR--NQKLLE 309 (523)
Q Consensus 243 ~--~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e~sv~v~-~d~-~g---~v~~~~~~---~~~~-~~~--~~~~~~ 309 (523)
. +++..+++.....- .......++||+.|.+ ...+=-++ +|. .| .++.+... +... ... ......
T Consensus 87 ~~~~~L~~AI~~V~aS~-~~~~~~aVlVQ~MV~~-~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t~~~~~~~ 164 (783)
T PRK05849 87 DSKDQLLKAIEKVIASY-GTSKDDEILVQPMLED-IVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGGSATTVYH 164 (783)
T ss_pred CcHHHHHHHHHHHHHhh-CCCCCCeEEEEeCccC-CCceEEEEECCCCCCCCceEEEEcCCCCCcceecccCCCCceeee
Confidence 3 48988888876442 1134467999999974 22222222 221 11 11111100 0000 000 011111
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccccEEEEEEeCCCCEEEEEEec
Q 009903 310 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNT 360 (523)
Q Consensus 310 ~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vE~~~~~~G~~~liEiNp 360 (523)
......++++..+++.+.+.++-+.+|. -+..|||-+|++|++|++-+=|
T Consensus 165 ~~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDIEfaid~~g~L~lLQ~RP 214 (783)
T PRK05849 165 YRDALVFKPPRLKKLIELIRELEALFGC-DFLDIEFAIDEKEELYILQVRP 214 (783)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCC-CCeeeEEEEccCCEEEEEEccC
Confidence 1112236788888888888888887774 3889999999889999998543
No 138
>PRK04148 hypothetical protein; Provisional
Probab=93.06 E-value=0.2 Score=43.55 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
.++|+++|.| .|..++..+.++|++|++++.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 778889999999999999976554
No 139
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.04 E-value=0.14 Score=56.68 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=79.2
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
.++|+|+|.|..|..+++.+++.|+++++++.|++......+.....+ .+ |..+.+ +++.+.-.+.++++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~-~G------Dat~~~-~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVF-YG------DATRMD-LLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEE-EE------eCCCHH-HHHhcCCCcCCEEEEE
Confidence 578999999999999999999999999999766554333333322333 33 344444 4444444567888876
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCC-CHHHHHHHHHhcCCc
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ-STEEAVKLADELGFP 223 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~-s~~e~~~~~~~~g~P 223 (523)
.+....+......++++ .|+...+.+++|..... .|.+.|...... .... +..-....++.+|.|
T Consensus 472 ~~d~~~n~~i~~~ar~~-----~p~~~iiaRa~d~~~~~-~L~~~Gad~v~~--e~~e~sl~l~~~~L~~lg~~ 537 (621)
T PRK03562 472 IDDPQTSLQLVELVKEH-----FPHLQIIARARDVDHYI-RLRQAGVEKPER--ETFEGALKSGRLVLESLGLG 537 (621)
T ss_pred eCCHHHHHHHHHHHHHh-----CCCCeEEEEECCHHHHH-HHHHCCCCEEeh--hhHhHHHHHHHHHHHHcCCC
Confidence 54322233333444444 13444455667765544 466777775422 1222 222233445556653
No 140
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=93.02 E-value=0.018 Score=49.14 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCccccc-------c-CeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC-CC
Q 009903 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-------A-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YG 152 (523)
Q Consensus 82 ~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~-------a-d~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~-~g 152 (523)
+|..+++++.+.+|+++.+.-+.+........ . +................ ........+|.|+|. +|
T Consensus 20 Sa~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~DvvFp~lHG 95 (117)
T PF01820_consen 20 SARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISASLI----EKNEQKLEVDVVFPVLHG 95 (117)
T ss_dssp HHHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEEEET----TESTTCTTCSEEEEECCS
T ss_pred HHHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhcccccccccccccc----ccccccccCCEEEEeccC
Confidence 47889999999999999886555431111100 0 00000000000000000 000004568999997 78
Q ss_pred cccccHHHHHHHHHcCCceeCC
Q 009903 153 FLAENAVFVEMCREHGINFIGP 174 (523)
Q Consensus 153 ~~~e~~~~a~~~~~~gl~~~g~ 174 (523)
...|+..+..+++-+++|++|+
T Consensus 96 ~~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 96 PNGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp TTTSSSHHHHHHHHTT-EBSSS
T ss_pred CCCcccHHHHHHHHcCCCCcCC
Confidence 8889999999999999999874
No 141
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.91 E-value=0.58 Score=42.71 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=47.8
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
|||.|+|+ |..|.+++++|.++|++|+.+..++...... -+..+ + ..+..+.+.+.+.+ .+.|+|+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i-~-----q~Difd~~~~a~~l--~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTI-L-----QKDIFDLTSLASDL--AGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---cccee-e-----cccccChhhhHhhh--cCCceEEEe
Confidence 57888885 7789999999999999999996554433211 11111 1 12345666665555 468999988
Q ss_pred CCcc
Q 009903 151 YGFL 154 (523)
Q Consensus 151 ~g~~ 154 (523)
++..
T Consensus 70 ~~~~ 73 (211)
T COG2910 70 FGAG 73 (211)
T ss_pred ccCC
Confidence 7654
No 142
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.88 E-value=0.18 Score=42.46 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=51.4
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009903 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (523)
Q Consensus 74 ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g~ 153 (523)
|+|+|.|..|..+++.+++.+.++++++.+++........-...++ + +..+.+.+.++ .-.+.+.|+...+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~-g------d~~~~~~l~~a-~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIY-G------DATDPEVLERA-GIEKADAVVILTDD 72 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEE-S-------TTSHHHHHHT-TGGCESEEEEESSS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccccc-c------cchhhhHHhhc-CccccCEEEEccCC
Confidence 6899999999999999999887999997554432222222233343 2 35555555443 33567888876543
Q ss_pred ccccHHHHHHHHH
Q 009903 154 LAENAVFVEMCRE 166 (523)
Q Consensus 154 ~~e~~~~a~~~~~ 166 (523)
..++...+..+++
T Consensus 73 d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 73 DEENLLIALLARE 85 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3233444455554
No 143
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.50 E-value=1.2 Score=46.31 Aligned_cols=75 Identities=19% Similarity=0.093 Sum_probs=49.8
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCc------cc-cc-cCeeEEcCCCCCCCCCCCHHHHHHHHH
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL------HV-KL-ADESVCIGEAPSSQSYLLIPNVLSAAI 140 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~------~~-~~-ad~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (523)
..++|||+|+ |.+|..+++.+.+.|++|+++..+...... .. .. .-+.+.. +..|.+.+.++++
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~-------Dl~d~~~l~~~~~ 131 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFG-------DVTDADSLRKVLF 131 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEe-------eCCCHHHHHHHHH
Confidence 3568999996 889999999999999999988643321110 00 00 1122322 4677788888877
Q ss_pred Hc--CCCEEEeCC
Q 009903 141 SR--GCTMLHPGY 151 (523)
Q Consensus 141 ~~--~id~Vi~~~ 151 (523)
.. ++|.|+.+.
T Consensus 132 ~~~~~~D~Vi~~a 144 (390)
T PLN02657 132 SEGDPVDVVVSCL 144 (390)
T ss_pred HhCCCCcEEEECC
Confidence 65 699998543
No 144
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.46 E-value=0.29 Score=42.88 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=49.1
Q ss_pred EEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc
Q 009903 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF 153 (523)
Q Consensus 74 ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g~ 153 (523)
++|+|+|..+..+++-++.+||+|+++++.++ ....+++... ...+.+.+...-..-++|+.+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----~~~~~~~~~~----------~~~~~~~~~~~~~~~t~Vv~th~h 66 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----RFPEADEVIC----------IPPDDILEDLEIDPNTAVVMTHDH 66 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----C-TTSSEEEC----------SHHHHHHHHC-S-TT-EEE--S-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----ccCCCCccEe----------cChHHHHhccCCCCCeEEEEcCCc
Confidence 57999999999999999999999999975533 1223444322 223444333322233466655554
Q ss_pred ccccHHHHHHHHHcCCcee---CCCHHHHHHhCCH
Q 009903 154 LAENAVFVEMCREHGINFI---GPNPDSIRIMGDK 185 (523)
Q Consensus 154 ~~e~~~~a~~~~~~gl~~~---g~~~~~~~~~~dK 185 (523)
..+. .+.+.+.+....++ | |....+...++
T Consensus 67 ~~D~-~~L~~~l~~~~~YiG~lG-S~~k~~~~~~~ 99 (136)
T PF13478_consen 67 ELDA-EALEAALASPARYIGLLG-SRRKAARRLER 99 (136)
T ss_dssp CCHH-HHHHHHTTSS-SEEEESS--HHHHHHHCCC
T ss_pred hhHH-HHHHHHHcCCCCEEEeec-CchHHHHHHHH
Confidence 3333 33344433345444 4 34444444443
No 145
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=92.17 E-value=0.65 Score=46.39 Aligned_cols=70 Identities=27% Similarity=0.380 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCC-cEEEEeCCCCCCC-----------ceEEeCCHHHHHHHH
Q 009903 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-PVMIKATAGGGGR-----------GMRLAKEPDEFVKLL 250 (523)
Q Consensus 183 ~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~-P~VvKP~~g~gs~-----------Gv~~v~~~~el~~~~ 250 (523)
.+-+...++|++.|+.+|+. ....|.+++.+.++++|- -+|||.-.-+||+ ||.+|.+++|.++.-
T Consensus 25 ~hey~~~~ll~~~Gv~vp~g--~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va 102 (434)
T KOG2799|consen 25 IHEYRSAALLRKYGINVPLG--YVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVA 102 (434)
T ss_pred HHHHHHHHHHHHcCCCCCCC--cccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHH
Confidence 34455588999999999999 789999999999999974 6999996544443 488999999988877
Q ss_pred HHHH
Q 009903 251 QQAK 254 (523)
Q Consensus 251 ~~~~ 254 (523)
.++.
T Consensus 103 ~qmi 106 (434)
T KOG2799|consen 103 SQMI 106 (434)
T ss_pred HHhh
Confidence 7664
No 146
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.12 E-value=0.37 Score=37.69 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=41.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
+|+|+|+|..|..++..+.++|.+|+++...+... ...+ ....+.+.+..++.+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~----~~~~-------------~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL----PGFD-------------PDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS----TTSS-------------HHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh----hhcC-------------HHHHHHHHHHHHHCCCEEEe
Confidence 68999999999999999999999999996433211 1111 11234566677777776554
No 147
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.11 E-value=1 Score=41.00 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=47.6
Q ss_pred EEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 74 ILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 74 ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
|+|+|+ |..|..+++.|.+.|++|+++..++..... ..--+.+.. +..+.+.+.+..+ ++|.|+...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~-------d~~d~~~~~~al~--~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQG-------DLFDPDSVKAALK--GADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEES-------CTTCHHHHHHHHT--TSSEEEECC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccccccee-------eehhhhhhhhhhh--hcchhhhhh
Confidence 789996 899999999999999999999654432221 111122322 4678888888776 699998654
No 148
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.05 E-value=0.53 Score=46.34 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=29.6
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|+|++||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 5678999997 778999999999999999998543
No 149
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.97 E-value=0.58 Score=43.97 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=29.4
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.++|||+|+|..|...++.+.+.|.+++++.+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 57999999999999999999999999999953
No 150
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=91.63 E-value=1 Score=44.22 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=64.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc-CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+||.|+|.|.+|..+++.+.+. ++++..+.................+. -+.+.+.+ ..++|+|+-+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~--------~~~d~~~l-----~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVR--------VVSSVDAL-----PQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCe--------eeCCHHHh-----ccCCCEEEEC
Confidence 5899999999999999999886 67766664211111000111100111 13455544 3569999866
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip 198 (523)
.+.. .....+..+.+.|.+++.-++.+.........+.+.+++.|..
T Consensus 69 t~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 69 AGHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 5421 2235556666778888754555442222234566677777764
No 151
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.56 E-value=0.54 Score=49.45 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=61.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcccc-ccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~-~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
+|+|+|+|-|.+|+.+++.+++.|++|++.+..+.+...... ...+-+.+. ....+. ..-..+|.|+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~-----~g~~~~------~~~~~~d~vV~ 75 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVE-----LGSHDD------EDLAEFDLVVK 75 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceee-----cCccch------hccccCCEEEE
Confidence 789999999999999999999999999999654444111111 111111110 001111 11244899998
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHH
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRI 181 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~ 181 (523)
..|....+ ...+.+...|++++| +.+..-.
T Consensus 76 SPGi~~~~-p~v~~A~~~gi~i~~-dieL~~r 105 (448)
T COG0771 76 SPGIPPTH-PLVEAAKAAGIEIIG-DIELFYR 105 (448)
T ss_pred CCCCCCCC-HHHHHHHHcCCcEEe-HHHHHHH
Confidence 87765444 466778888999885 4444443
No 152
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.48 E-value=0.75 Score=46.87 Aligned_cols=122 Identities=9% Similarity=0.028 Sum_probs=64.4
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCC-cEEEEecCCCCCCccccccCeeEEcCCCCCC-CCCCCHHHHHHHHHHcCCCE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSS-QSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~-~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~-~~~~~~~~l~~~~~~~~id~ 146 (523)
-..++|+|+|.|..|..+++.+.+.|+ ++.+++. |... .+.+..+.++-. .+. ......+.+.+.+++.+++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~--D~ve-~sNL~RQ~l~~~--~d~~~g~~Ka~aa~~~l~~inp~v 96 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADR--DYVE-WSNLQRQQLYTE--EDAKQKKPKAIAAKEHLRKINSEV 96 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--Cccc-ccccCccccccH--HHccCCccHHHHHHHHHHHHCCCc
Confidence 345789999999999999999999999 5666643 3211 112222222210 000 00123445556666666654
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTV 200 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p 200 (523)
-+-..........+.+++....+-+.+.+.. ..+....+++.+.|+|..
T Consensus 97 ~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~-----~~r~~in~~~~~~~ip~i 145 (338)
T PRK12475 97 EIVPVVTDVTVEELEELVKEVDLIIDATDNF-----DTRLLINDLSQKYNIPWI 145 (338)
T ss_pred EEEEEeccCCHHHHHHHhcCCCEEEEcCCCH-----HHHHHHHHHHHHcCCCEE
Confidence 3322111001123334555555544443322 234556677888888765
No 153
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.48 E-value=0.56 Score=48.76 Aligned_cols=112 Identities=12% Similarity=0.099 Sum_probs=63.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+++++|+|.|..|..+++.+++.|+++++++.+.. ..... .+..+..+ +..+.+.+ +.+.-.+.++|+..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~~-~g~~vI~G------D~td~e~L-~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EHRLP-DDADLIPG------DSSDSAVL-KKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hhhcc-CCCcEEEe------CCCCHHHH-HhcCcccCCEEEEc
Confidence 57899999999999999999999999999964421 11111 11222222 34454444 33333467788876
Q ss_pred CCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 009903 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip 198 (523)
.+...++......+++.+ |+...+..+.|... .+.+++.|..
T Consensus 310 t~dD~~Nl~ivL~ar~l~-----p~~kIIa~v~~~~~-~~~L~~~GaD 351 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMS-----SDVKTVAAVNDSKN-LEKIKRVHPD 351 (393)
T ss_pred CCChHHHHHHHHHHHHhC-----CCCcEEEEECCHHH-HHHHHhcCCC
Confidence 543333333333344432 23333444444433 4456667654
No 154
>PRK08177 short chain dehydrogenase; Provisional
Probab=91.42 E-value=0.61 Score=44.24 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=45.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccC-eeEEcCCCCCCCCCCCHHHHHH---HHHHcCCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLS---AAISRGCT 145 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad-~~~~~~~~~~~~~~~~~~~l~~---~~~~~~id 145 (523)
||+++|+|+ |.+|..+++.+.+.|++|++++.+............ ..+.+ +..+.+.+.+ .+...++|
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-------D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKL-------DMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEc-------CCCCHHHHHHHHHHhhcCCCC
Confidence 468999985 678999999999999999998654432211111111 11222 2344444444 44335799
Q ss_pred EEEeCCC
Q 009903 146 MLHPGYG 152 (523)
Q Consensus 146 ~Vi~~~g 152 (523)
.|+-..+
T Consensus 74 ~vi~~ag 80 (225)
T PRK08177 74 LLFVNAG 80 (225)
T ss_pred EEEEcCc
Confidence 8886543
No 155
>PRK06988 putative formyltransferase; Provisional
Probab=91.33 E-value=0.64 Score=46.83 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=31.5
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
||+||++.|.+..+...++++.+.|++++++.+.++
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d 36 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHED 36 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 467999999999999999999999999988866554
No 156
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.25 E-value=0.86 Score=47.12 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=44.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
.|+|||+|+ |.+|..+++.|.+.|++|+.++..............+.+.. +..+.+.+..+.+ ++|.|+-
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~--~~D~Vih 91 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLV-------DLRVMENCLKVTK--GVDHVFN 91 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEEC-------CCCCHHHHHHHHh--CCCEEEE
Confidence 368999997 88999999999999999999863222111111111222322 3455666665554 5898774
Q ss_pred C
Q 009903 150 G 150 (523)
Q Consensus 150 ~ 150 (523)
.
T Consensus 92 ~ 92 (370)
T PLN02695 92 L 92 (370)
T ss_pred c
Confidence 3
No 157
>PRK05693 short chain dehydrogenase; Provisional
Probab=91.12 E-value=0.66 Score=45.49 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=45.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i 144 (523)
||++||+|+ |.+|..+++.+.+.|++|++++.+.+.........-..+.+ |..+.+.+.++++. .++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------Dl~~~~~~~~~~~~~~~~~~~i 73 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQL-------DVNDGAALARLAEELEAEHGGL 73 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEe-------eCCCHHHHHHHHHHHHHhcCCC
Confidence 478999986 67899999999999999998854322111000000122323 24455555554433 268
Q ss_pred CEEEeCCC
Q 009903 145 TMLHPGYG 152 (523)
Q Consensus 145 d~Vi~~~g 152 (523)
|.|+-..+
T Consensus 74 d~vi~~ag 81 (274)
T PRK05693 74 DVLINNAG 81 (274)
T ss_pred CEEEECCC
Confidence 98886544
No 158
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=91.04 E-value=0.64 Score=40.15 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=54.7
Q ss_pred ccEEEEEcCcH----HHHHHHHHHHHcCCcEEEEecCCCC-----CCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH
Q 009903 71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDK-----DALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141 (523)
Q Consensus 71 ~k~ILi~g~g~----~~~~vi~aa~~~G~~vi~v~~~~~~-----~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (523)
.|+|.++|.+. .+..+.+.+.+.||+|+-+++.... .....+++|-...++--.-.........+++-+-+
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~ 95 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALE 95 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHh
Confidence 58999999765 4899999999999999999652221 01111122110000000000011122233333444
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 142 ~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.++..+|...|. .+....+.+++.|+.++
T Consensus 96 ~~~kv~W~QlGi--~n~ea~~~~~~aG~~vV 124 (140)
T COG1832 96 KGAKVVWLQLGI--RNEEAAEKARDAGLDVV 124 (140)
T ss_pred hCCCeEEEecCc--CCHHHHHHHHHhCcHHH
Confidence 567777776665 44456677777777543
No 159
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.49 E-value=1.5 Score=38.54 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=25.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~ 101 (523)
+|+|+|.|..|..+++.+.+.|+. +.+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEc
Confidence 589999999999999999999995 66664
No 160
>PRK08017 oxidoreductase; Provisional
Probab=90.40 E-value=1.1 Score=43.24 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=29.6
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|+|++||+|+ |.+|..+++.+.+.|++++++..+
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999997 889999999999999999888544
No 161
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.38 E-value=3.2 Score=44.23 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=55.0
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
...++|+|+|.|.+|..+++.|++ |++|++.+...........+.+..+ ++ ....+.+ .++|.|+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~-------~~~~~~~------~~~d~vV 68 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IA-------ALSDSRW------QNLDKIV 68 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-ec-------cCChhHh------hCCCEEE
Confidence 345789999999999999999995 9999888522221111011101111 11 1111111 2589998
Q ss_pred eCCCcccccHHHHHHHHHcCCceeCCCHHH
Q 009903 149 PGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~ 178 (523)
...+....+ .....+.+.|+++++ ..+.
T Consensus 69 ~SPgI~~~~-p~~~~a~~~gi~v~~-e~el 96 (454)
T PRK01368 69 LSPGIPLTH-EIVKIAKNFNIPITS-DIDL 96 (454)
T ss_pred ECCCCCCCC-HHHHHHHHCCCceec-HHHH
Confidence 877654444 444566778999874 4444
No 162
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=90.33 E-value=9.7 Score=38.04 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCC-------CceEEeCCHHHHHHHHHH---HH---HHHHHhc---------CCCcEEE
Q 009903 211 EEAVKLADELGFPVMIKATAGGGG-------RGMRLAKEPDEFVKLLQQ---AK---SEAAAAF---------GNDGVYL 268 (523)
Q Consensus 211 ~e~~~~~~~~g~P~VvKP~~g~gs-------~Gv~~v~~~~el~~~~~~---~~---~~~~~~~---------~~~~~lv 268 (523)
+++.+..+++|--|+.|-...+-- .+...|.+..|+.-.++. +. ....... ....+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 457788889998899998777632 334578888877655532 10 0100000 1246788
Q ss_pred eeccCCCcEEEEEEEEeCCCcEEEEeeeceeeeecCceeeEecCC-CCCCHHHHHHHHHHHH-HHHHHcCCccccEEEEE
Q 009903 269 EKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPS-PALTPELRKAMGDAAV-AAAASIGYIGVGTVEFL 346 (523)
Q Consensus 269 EefI~G~~e~sv~v~~d~~g~v~~~~~~~~~~~~~~~~~~~~~p~-~~l~~~~~~~l~~~a~-~~~~alg~~G~~~vE~~ 346 (523)
-+|..-.....+-+++. +++++.+..++... .+. .....+..+.|.+... .+...+.+. -+-+|+.
T Consensus 155 rkw~~l~p~~EFRcFV~-~~~LiaISQr~~~~----------~~~L~~~~~~I~~~I~~F~~~~I~~~~~~~-~~v~DVy 222 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR-NRKLIAISQRDLNY----------YDFLEELKEEIRSKIQEFFEEHIKPKFPLD-NYVFDVY 222 (299)
T ss_pred eccccCCccceEEEEEE-CCEEEEEecccccc----------cHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CEEEEEE
Confidence 88886655555666664 55888885544311 111 0023334444444442 344445543 4559999
Q ss_pred EeCC-CCEEEEEEecCCC
Q 009903 347 LDER-GSFYFMEMNTRIQ 363 (523)
Q Consensus 347 ~~~~-G~~~liEiNpR~~ 363 (523)
++.+ ++++|||+||--.
T Consensus 223 i~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 223 ITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred EcCCCCeEEEEEecCCcc
Confidence 9976 7899999999764
No 163
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=90.28 E-value=1.3 Score=45.20 Aligned_cols=74 Identities=11% Similarity=0.001 Sum_probs=46.0
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccc---cc---cC-eeEEcCCCCCCCCCCCHHHHHHHHHHc
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KL---AD-ESVCIGEAPSSQSYLLIPNVLSAAISR 142 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~---~~---ad-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (523)
|++|||+|+ |.+|..+++.+.+.|++++++........... .. .+ ..+.. +..+.+.+.++.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~ 73 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKV-------DICDRAELARVFTEH 73 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEEC-------CCcChHHHHHHHhhc
Confidence 468999996 78999999999999998665432211100000 11 01 11222 356677787777777
Q ss_pred CCCEEEeCC
Q 009903 143 GCTMLHPGY 151 (523)
Q Consensus 143 ~id~Vi~~~ 151 (523)
++|.|+-..
T Consensus 74 ~~D~Vih~A 82 (355)
T PRK10217 74 QPDCVMHLA 82 (355)
T ss_pred CCCEEEECC
Confidence 799887543
No 164
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=90.15 E-value=2.3 Score=40.28 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=54.0
Q ss_pred ccEEEEEcCcHHHHHHHHH--HHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 71 QEKILVANRGEIAVRVIRT--AHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~a--a~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
.++|+|+|.|..|..+++. ....|++++.+.+. ++......... +. ....+.+.+++++.++|.|+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~-d~~~~~~~i~g--~~---------v~~~~~l~~li~~~~iD~Vi 151 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV-DPEKIGTKIGG--IP---------VYHIDELEEVVKENDIEIGI 151 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC-ChhhcCCEeCC--eE---------EcCHHHHHHHHHHCCCCEEE
Confidence 4689999999999988875 33578998877532 32221111111 11 12356777888888999988
Q ss_pred eCCCcccccHHHHHHHHHcCCcee
Q 009903 149 PGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.+.... ....+.+.+.+.|+..+
T Consensus 152 Ia~P~~-~~~~i~~~l~~~Gi~~i 174 (213)
T PRK05472 152 LTVPAE-AAQEVADRLVEAGIKGI 174 (213)
T ss_pred EeCCch-hHHHHHHHHHHcCCCEE
Confidence 664321 22344556666665433
No 165
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=90.13 E-value=1.2 Score=45.78 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=54.9
Q ss_pred ccEEEEEcCcHH-----HHHHHHHHHHcCCcEEEEecCCCCCCccc-cccCeeEEcCCCCCCC--CC----------CCH
Q 009903 71 QEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLADESVCIGEAPSSQ--SY----------LLI 132 (523)
Q Consensus 71 ~k~ILi~g~g~~-----~~~vi~aa~~~G~~vi~v~~~~~~~~~~~-~~ad~~~~~~~~~~~~--~~----------~~~ 132 (523)
||+|+|.|+|.. +..+++++++.|++|.++........... ..--.++.++...-.. .. ...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 578999988764 67899999999999999974433221111 1111222232111111 10 011
Q ss_pred HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 133 ~~l~~~~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
-....+.++.++|.|+..-++. .....-.....++|++
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~--s~p~~~aa~~~~~p~~ 118 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFV--SVPVVIGGWLNRVPVL 118 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchh--hHHHHHHHHHcCCCEE
Confidence 1233567889999999755442 2223344455567655
No 166
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=90.03 E-value=1.4 Score=41.86 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=29.5
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.++|||+|+|..|.+=++.+.+.|.+|+++.+.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 468999999999999899999999999999544
No 167
>PLN02572 UDP-sulfoquinovose synthase
Probab=89.94 E-value=2.2 Score=45.32 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=29.6
Q ss_pred CCCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 68 TCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 68 ~~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.-++|+|||+|+ |.+|..+++.|.+.|++|++++
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 345678999996 8899999999999999999985
No 168
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.77 E-value=0.86 Score=39.65 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=26.6
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~ 101 (523)
.++|+|+|.|..|..+++.+.+.|+. +++++
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD 33 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVD 33 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecC
Confidence 46899999999999999999999995 66664
No 169
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=89.67 E-value=12 Score=35.41 Aligned_cols=142 Identities=16% Similarity=0.081 Sum_probs=90.1
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
|.+.+..+|--+...+..|-+.|++|..+-....... |.+.+ ...+.+.+...++..++..+....
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~------dS~m~--------H~~n~~~~~~~Ae~~gi~l~~~~~ 67 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENG------DSYMF--------HTPNLELAELQAEAMGIPLVTFDT 67 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCC------Ceeee--------eccchHHHHHHHHhcCCceEEEec
Confidence 4455555554445566677789999877642221111 22221 134556666677777787665432
Q ss_pred Cc--ccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeC
Q 009903 152 GF--LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 152 g~--~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~ 229 (523)
.. ..|...+.++++.+++..+ ..-++..-..|.++.+++.+.|+-+-.. ..-.|.+++.+..-+.||-++|=.+
T Consensus 68 ~g~~e~eve~L~~~l~~l~~d~i--v~GaI~s~yqk~rve~lc~~lGl~~~~P--LWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 68 SGEEEREVEELKEALRRLKVDGI--VAGAIASEYQKERVERLCEELGLKVYAP--LWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred CccchhhHHHHHHHHHhCcccEE--EEchhhhHHHHHHHHHHHHHhCCEEeec--ccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 21 1233466777777775443 3557888889999999999999986544 5567888888777788988765554
Q ss_pred CC
Q 009903 230 AG 231 (523)
Q Consensus 230 ~g 231 (523)
..
T Consensus 144 sa 145 (223)
T COG2102 144 SA 145 (223)
T ss_pred ec
Confidence 43
No 170
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=89.61 E-value=1.3 Score=44.40 Aligned_cols=69 Identities=22% Similarity=0.160 Sum_probs=45.1
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
++|||+|+ |.+|..+++.+.+.|++|++++.............-+.+.. +..+.+.+.++++ ++|.|+-
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-------D~~~~~~l~~~~~--~~d~vi~ 70 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEG-------DLRDPASLRKAVA--GCRALFH 70 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEe-------eCCCHHHHHHHHh--CCCEEEE
Confidence 47999986 88999999999999999999865433211111111122222 4667777777765 4788773
No 171
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=89.58 E-value=1.4 Score=44.95 Aligned_cols=76 Identities=12% Similarity=-0.062 Sum_probs=49.6
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcc---ccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH---VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~---~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
.|+|||+|+ |.+|..+++.+.+.|++|++++.+....... .........+ ..+..+.+.+.++.++.++|.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-----FGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEE-----EccCCCHHHHHHHHhhcCCCE
Confidence 478999996 7899999999999999999885433211100 0111111111 124567788888888778998
Q ss_pred EEeCC
Q 009903 147 LHPGY 151 (523)
Q Consensus 147 Vi~~~ 151 (523)
|+-..
T Consensus 79 vih~A 83 (349)
T TIGR02622 79 VFHLA 83 (349)
T ss_pred EEECC
Confidence 88543
No 172
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.52 E-value=2.1 Score=40.15 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=27.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCC-cEEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~-~vi~v~ 101 (523)
..++|+|+|.|..|..+++.+.+.|+ ++++++
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD 52 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVD 52 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEec
Confidence 45789999999999999999999998 566664
No 173
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.43 E-value=1.9 Score=43.84 Aligned_cols=74 Identities=4% Similarity=-0.157 Sum_probs=48.9
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCC--Ccccccc-------C--eeEEcCCCCCCCCCCCHHHHHH
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKD--ALHVKLA-------D--ESVCIGEAPSSQSYLLIPNVLS 137 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~--~~~~~~a-------d--~~~~~~~~~~~~~~~~~~~l~~ 137 (523)
..|+|||+|+ |.+|..+++.+.+.|++|+++....... .....+. . ..+. .+..+.+.+.+
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~~~~ 77 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHY-------GDLSDASSLRR 77 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEE-------ecCCCHHHHHH
Confidence 3578999996 7899999999999999999885332210 0011111 0 1122 24667778888
Q ss_pred HHHHcCCCEEEeC
Q 009903 138 AAISRGCTMLHPG 150 (523)
Q Consensus 138 ~~~~~~id~Vi~~ 150 (523)
+.+..++|.|+-.
T Consensus 78 ~~~~~~~d~Vih~ 90 (340)
T PLN02653 78 WLDDIKPDEVYNL 90 (340)
T ss_pred HHHHcCCCEEEEC
Confidence 8877778988743
No 174
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.41 E-value=1 Score=47.85 Aligned_cols=77 Identities=8% Similarity=0.011 Sum_probs=48.2
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcccc-ccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~-~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
..+++|+|+|.|..|..+++.+.+.|+++++++.+++....... ..+..+..+ +..+.+.+.+. .-.+.|.|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~g------d~~~~~~L~~~-~~~~a~~v 301 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHG------DGTDQELLEEE-GIDEADAF 301 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEEC------CCCCHHHHHhc-CCccCCEE
Confidence 34789999999999999999999999999999654432211111 112222222 34444444332 33457888
Q ss_pred EeCCC
Q 009903 148 HPGYG 152 (523)
Q Consensus 148 i~~~g 152 (523)
+...+
T Consensus 302 i~~~~ 306 (453)
T PRK09496 302 IALTN 306 (453)
T ss_pred EECCC
Confidence 76654
No 175
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.33 E-value=5.2 Score=38.66 Aligned_cols=74 Identities=9% Similarity=0.133 Sum_probs=43.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
...+|+|+|.|..|..+++.+.+.|+.-+.+. |.|.... ..+..+.++-. .+. .....+.+.+.+++.+++.-+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lv-D~D~ve~-sNL~RQ~l~~~--~di-G~~Ka~~a~~~l~~inp~v~i 96 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLL-DFDTVSL-SNLQRQVLHSD--ANI-GQPKVESAKDALTQINPHIAI 96 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEE-eCCcccc-cCcccceeeeH--hhC-CCcHHHHHHHHHHHHCCCcEE
Confidence 35789999999999999999999998866653 3332221 22222333210 000 122345556666666666544
No 176
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=89.26 E-value=1.7 Score=42.78 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=44.0
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 73 ~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
+|||+|+ |..|..+.+.+. -+++++.++... + +..+.+.+.++.++.++|.||-+-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~-------Ditd~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE---------------L-------DITDPDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------c-------cccChHHHHHHHHhhCCCEEEECc
Confidence 3999996 778999988888 668888874221 2 267888999999999999999653
No 177
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.25 E-value=0.83 Score=43.68 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.5
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEE-ec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAV-YS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v-~~ 102 (523)
|+|++||+|+ |.+|..+++.+.+.|++++++ ..
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678999996 789999999999999999887 43
No 178
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=89.15 E-value=1.2 Score=42.11 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=49.5
Q ss_pred EEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcccc-ccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 74 ILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 74 ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~-~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
|||+|+ |-+|..+++.+.+.|++|+.+............ ..-..+.. +..+.+.+.++.+..++|.|+-..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-------dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIG-------DLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEES-------ETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEe-------eccccccccccccccCceEEEEee
Confidence 789985 789999999999999998877543332211111 11123333 367888999999988999988543
No 179
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=88.94 E-value=1.7 Score=42.47 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=52.4
Q ss_pred CCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCC-CCccccccCee----EEcCCCCCCCCCCCHHHHHHHHHHc
Q 009903 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDK-DALHVKLADES----VCIGEAPSSQSYLLIPNVLSAAISR 142 (523)
Q Consensus 69 ~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~-~~~~~~~ad~~----~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (523)
.+++++||.|+ +.+|..+++.+.+.|++++++..+.+. .....++.++. ..+ +.+..+..+.+.+.+..+..
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi--~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVI--PADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEE--ECcCCChhHHHHHHHHHHhc
Confidence 45789999996 678999999999999999999644332 11222333322 222 13333445556666655554
Q ss_pred --CCCEEEeCCC
Q 009903 143 --GCTMLHPGYG 152 (523)
Q Consensus 143 --~id~Vi~~~g 152 (523)
.+|.++-.-|
T Consensus 82 ~~~IdvLVNNAG 93 (265)
T COG0300 82 GGPIDVLVNNAG 93 (265)
T ss_pred CCcccEEEECCC
Confidence 7998886544
No 180
>PRK08267 short chain dehydrogenase; Provisional
Probab=88.85 E-value=1.3 Score=42.99 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
||++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999986 678999999999999999998543
No 181
>PRK06182 short chain dehydrogenase; Validated
Probab=88.66 E-value=1.4 Score=43.12 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=46.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i 144 (523)
.|+++|+|+ |.+|..+++.+.+.|++|+++..+.+.........-..+.+ |..+.+.+.++.++ .++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~-------Dv~~~~~~~~~~~~~~~~~~~i 75 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSL-------DVTDEASIKAAVDTIIAEEGRI 75 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEe-------eCCCHHHHHHHHHHHHHhcCCC
Confidence 478999996 67899999999999999998854332111000000122222 34555555555443 268
Q ss_pred CEEEeCCC
Q 009903 145 TMLHPGYG 152 (523)
Q Consensus 145 d~Vi~~~g 152 (523)
|.++-..|
T Consensus 76 d~li~~ag 83 (273)
T PRK06182 76 DVLVNNAG 83 (273)
T ss_pred CEEEECCC
Confidence 99886654
No 182
>PLN02778 3,5-epimerase/4-reductase
Probab=88.56 E-value=1.9 Score=43.15 Aligned_cols=57 Identities=14% Similarity=-0.044 Sum_probs=40.7
Q ss_pred CCCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 68 TCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 68 ~~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
..+.|+|||+|+ |-+|..+++.+.+.|++|++.. .+ ..+.+.+....+..++|.
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~--~~-----------------------~~~~~~v~~~l~~~~~D~ 60 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS--GR-----------------------LENRASLEADIDAVKPTH 60 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec--Cc-----------------------cCCHHHHHHHHHhcCCCE
Confidence 345678999996 8899999999999999986431 00 123445655666678998
Q ss_pred EEe
Q 009903 147 LHP 149 (523)
Q Consensus 147 Vi~ 149 (523)
|+=
T Consensus 61 ViH 63 (298)
T PLN02778 61 VFN 63 (298)
T ss_pred EEE
Confidence 883
No 183
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.56 E-value=3.9 Score=38.30 Aligned_cols=109 Identities=10% Similarity=0.151 Sum_probs=61.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCe--eEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE--SVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~--~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
..|+|+|+|.|..|..+++.+.+.|++|++.+.+.+. ...+.+. ...+ +.+++.. .++|.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~---~~~~~~~~g~~~v----------~~~~l~~----~~~Dv~ 89 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEA---VARAAELFGATVV----------APEEIYS----VDADVF 89 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHH---HHHHHHHcCCEEE----------cchhhcc----ccCCEE
Confidence 3578999999999999999999999999977433211 1111111 1111 1122222 358999
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~ 201 (523)
+|+.- +.....+.+++++.+++.-..+ .-+.| ..-.+.|++.|+...|
T Consensus 90 vp~A~---~~~I~~~~~~~l~~~~v~~~AN--~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 90 APCAL---GGVINDDTIPQLKAKAIAGAAN--NQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred Eeccc---ccccCHHHHHHcCCCEEEECCc--CccCC-HhHHHHHHHCCCEEeC
Confidence 98632 1211223445555554411111 11122 4566788999999866
No 184
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=88.46 E-value=3.6 Score=40.51 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=45.2
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH----cC-CCE
Q 009903 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS----RG-CTM 146 (523)
Q Consensus 73 ~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-id~ 146 (523)
+|||+|+ |..|..+++.|.+.|++|.++..+++... . ..-+.+. .++.|.+.+.+..+. .+ +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~--~-~~~~~~~-------~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA--G-PNEKHVK-------FDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc--C-CCCcccc-------ccCCCHHHHHHHHhcccCcCCceeE
Confidence 4899997 88999999999999999999965443221 1 1111122 247777777776642 34 787
Q ss_pred EEeC
Q 009903 147 LHPG 150 (523)
Q Consensus 147 Vi~~ 150 (523)
|+..
T Consensus 71 v~~~ 74 (285)
T TIGR03649 71 VYLV 74 (285)
T ss_pred EEEe
Confidence 7643
No 185
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=88.41 E-value=1.2 Score=46.18 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=67.1
Q ss_pred EEEEcCcHHHHHHHHHHHHcCC--cEEEEecCCCCCCccc----cccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 74 ILVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 74 ILi~g~g~~~~~vi~aa~~~G~--~vi~v~~~~~~~~~~~----~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
|+|+|+|..|..+++.+.+.+- ++++.+.+.+...... ...-....+ +..|.+.+.+++++ .|.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~-------d~~~~~~l~~~~~~--~dvV 71 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQV-------DVNDPESLAELLRG--CDVV 71 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE---------TTTHHHHHHHHTT--SSEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEE-------ecCCHHHHHHHHhc--CCEE
Confidence 7999999999999999999974 6777754333211111 011123333 36678888888765 6999
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~ 201 (523)
+.+.+.. ....+++.|.+.|++++-++. ....-....+..+++|+....
T Consensus 72 in~~gp~-~~~~v~~~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 72 INCAGPF-FGEPVARACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp EE-SSGG-GHHHHHHHHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSEEE-
T ss_pred EECCccc-hhHHHHHHHHHhCCCeeccch----hHHHHHHHHHHHHhhCCEEEe
Confidence 9876544 456888999999999885433 111112223445567776544
No 186
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=88.38 E-value=2.4 Score=41.73 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=62.8
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHc--CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
+.+|.|+|.|.+|..+++.+.+. |++++.+. +.++. ....++++.- . ...+.+.++++ ..+|+|+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~-dr~~~-~a~~~a~~~g-~-----~~~~~~~eell-----~~~D~Vv 72 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVA-VRDPQ-RHADFIWGLR-R-----PPPVVPLDQLA-----THADIVV 72 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEE-CCCHH-HHHHHHHhcC-C-----CcccCCHHHHh-----cCCCEEE
Confidence 47899999999999999999873 78877664 22221 1122222210 0 01134566663 2489998
Q ss_pred eCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 009903 149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP 198 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip 198 (523)
.+.... ....+...+.+.|.+++..+..+.. +-..+.+.+++.|..
T Consensus 73 i~tp~~-~h~e~~~~aL~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 73 EAAPAS-VLRAIVEPVLAAGKKAIVLSVGALL---RNEDLIDLARQNGGQ 118 (271)
T ss_pred ECCCcH-HHHHHHHHHHHcCCcEEEecchhHH---hHHHHHHHHHHcCCE
Confidence 765321 1234444555677777643333222 234556666666655
No 187
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=88.31 E-value=2.9 Score=44.35 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=56.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHH---cCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
.++++|+|+|..+..+++++++ .|++++.+..+.. .. ........+ ..+.+++.++++++++|.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~-~~-~~~i~g~pV----------lg~~~~l~~~i~~~~id~V 192 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRP-SD-RVEVAGLPV----------LGKLDDLVELVRAHRVDEV 192 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCc-cc-ccccCCCcc----------cCCHHHHHHHHHhCCCCEE
Confidence 4679999999999999999875 4788887653221 11 111111111 3457789999999999988
Q ss_pred EeCCCccccc--HHHHHHHHHcCCce
Q 009903 148 HPGYGFLAEN--AVFVEMCREHGINF 171 (523)
Q Consensus 148 i~~~g~~~e~--~~~a~~~~~~gl~~ 171 (523)
+.......+. ..+.+.++..|+.+
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V 218 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDV 218 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEE
Confidence 7654322111 24455666777654
No 188
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.31 E-value=1.2 Score=38.23 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=26.9
Q ss_pred cEEEEEcC-cHHHHHHHHHHHH-cCCcEEEEec
Q 009903 72 EKILVANR-GEIAVRVIRTAHE-MGIPCVAVYS 102 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~-~G~~vi~v~~ 102 (523)
+||+|+|. |.+|..+++.+.+ .|++++....
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~ 33 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVD 33 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEe
Confidence 47999999 9999999999999 7898777753
No 189
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=88.26 E-value=1.9 Score=43.85 Aligned_cols=71 Identities=8% Similarity=-0.109 Sum_probs=47.8
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCC--Ccccccc----------CeeEEcCCCCCCCCCCCHHHHHHH
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKD--ALHVKLA----------DESVCIGEAPSSQSYLLIPNVLSA 138 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~--~~~~~~a----------d~~~~~~~~~~~~~~~~~~~l~~~ 138 (523)
|+|||+|+ |.+|..+++.+.+.|++|++++...... .....+. -+.+. .+..|.+.+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHY-------GDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEE-------eccCCHHHHHHH
Confidence 58999996 7899999999999999999885332210 0000110 01122 246678888888
Q ss_pred HHHcCCCEEEe
Q 009903 139 AISRGCTMLHP 149 (523)
Q Consensus 139 ~~~~~id~Vi~ 149 (523)
.+..++|.|+-
T Consensus 74 ~~~~~~d~ViH 84 (343)
T TIGR01472 74 IDEIKPTEIYN 84 (343)
T ss_pred HHhCCCCEEEE
Confidence 88778898873
No 190
>PRK06179 short chain dehydrogenase; Provisional
Probab=88.17 E-value=2.8 Score=40.85 Aligned_cols=73 Identities=14% Similarity=0.019 Sum_probs=46.4
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i 144 (523)
.++|+|+|+ |.+|..+++.+.+.|++|+++..+.+...... --+.+.. |..+.+.+.++.+. .++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~--~~~~~~~-------D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIP--GVELLEL-------DVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccC--CCeeEEe-------ecCCHHHHHHHHHHHHHhCCCC
Confidence 367999986 67899999999999999998865433221111 1122333 35556665555443 258
Q ss_pred CEEEeCCC
Q 009903 145 TMLHPGYG 152 (523)
Q Consensus 145 d~Vi~~~g 152 (523)
|.++-..+
T Consensus 75 d~li~~ag 82 (270)
T PRK06179 75 DVLVNNAG 82 (270)
T ss_pred CEEEECCC
Confidence 98886654
No 191
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.11 E-value=2.1 Score=42.06 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=28.5
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|.|.++|.|+|.+|..+++.+. .|++|++++.+
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYN 33 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCC
Confidence 6788999999999999999996 79999998643
No 192
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.11 E-value=1.6 Score=36.77 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=51.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHc--CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 73 KILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
+|+|+|.|..+...+.++.+. +++++.+. +.++.. ...++.. +.+ ..|.+.+++ ....++|+|+..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~-d~~~~~-~~~~~~~-~~~------~~~~~~~~l---l~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVC-DPDPER-AEAFAEK-YGI------PVYTDLEEL---LADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEE-CSSHHH-HHHHHHH-TTS------EEESSHHHH---HHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEE-eCCHHH-HHHHHHH-hcc------cchhHHHHH---HHhhcCCEEEEe
Confidence 799999999999999888888 56666553 333211 1111110 000 014555544 444579998876
Q ss_pred CCcccccHHHHHHHHHcCCcee
Q 009903 151 YGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
... ......+..+.+.|++++
T Consensus 70 tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 70 TPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp SSG-GGHHHHHHHHHHTTSEEE
T ss_pred cCC-cchHHHHHHHHHcCCEEE
Confidence 532 134566777777887665
No 193
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=88.11 E-value=1.6 Score=43.53 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=43.6
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|+|||+|+ |.+|..+++.+.+.| +|+.++... . .+. .+..|.+.+.++.+..++|.|+=
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~--~---------~~~-------~Dl~d~~~~~~~~~~~~~D~Vih 60 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS--T---------DYC-------GDFSNPEGVAETVRKIRPDVIVN 60 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc--c---------ccc-------CCCCCHHHHHHHHHhcCCCEEEE
Confidence 37999997 889999999999999 777763211 0 111 24667888888888778998883
No 194
>PRK06398 aldose dehydrogenase; Validated
Probab=88.10 E-value=3.9 Score=39.62 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999996 578999999999999999988543
No 195
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=88.03 E-value=4.2 Score=43.20 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=66.1
Q ss_pred ccEEEEEcCc----HHHHHHHHHHHHcCC--cEEEEecCCCCCCc---ccc------ccCeeEEcCCCCCCCCCCCHHHH
Q 009903 71 QEKILVANRG----EIAVRVIRTAHEMGI--PCVAVYSTIDKDAL---HVK------LADESVCIGEAPSSQSYLLIPNV 135 (523)
Q Consensus 71 ~k~ILi~g~g----~~~~~vi~aa~~~G~--~vi~v~~~~~~~~~---~~~------~ad~~~~~~~~~~~~~~~~~~~l 135 (523)
.++|.|+|.+ ..+..+++.+++.|| +++.+++......- +.. -.|-.+..- .......+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~v------p~~~~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVV------PAKYVPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEec------CHHHHHHH
Confidence 4789999984 468999999999998 68888654332111 111 123232221 12334556
Q ss_pred HHHHHHcCCCEEEeCCCccccc--------HHHHHHHHHcCCceeCCCHHHHHHhCCH
Q 009903 136 LSAAISRGCTMLHPGYGFLAEN--------AVFVEMCREHGINFIGPNPDSIRIMGDK 185 (523)
Q Consensus 136 ~~~~~~~~id~Vi~~~g~~~e~--------~~~a~~~~~~gl~~~g~~~~~~~~~~dK 185 (523)
++.+.+.++..++...+-+.|. ..+.+.+++.|++++||+.--+....++
T Consensus 81 l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~~ 138 (447)
T TIGR02717 81 VEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIK 138 (447)
T ss_pred HHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCCC
Confidence 6666677887765432222221 3556777889999999876655555554
No 196
>PRK12828 short chain dehydrogenase; Provisional
Probab=87.99 E-value=2 Score=40.70 Aligned_cols=34 Identities=6% Similarity=0.024 Sum_probs=29.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
.|++||+|+ |.+|..+++.+.+.|++|++++.+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 578999996 7789999999999999999886543
No 197
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.94 E-value=2.2 Score=45.64 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=53.0
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCe---eEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE---SVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~---~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
+++|+|+|.|.+|..+++.+.+.|+.|.+.+.+.. . ...+.++ .+..+ ..+.+.+ .++|.|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~--~-~~~~l~~~gi~~~~~-------~~~~~~~------~~~d~v 78 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET--A-RHKLIEVTGVADIST-------AEASDQL------DSFSLV 78 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH--H-HHHHHHhcCcEEEeC-------CCchhHh------cCCCEE
Confidence 56899999999999999999999998887753221 1 1111111 11111 1112222 247888
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeC
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIG 173 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g 173 (523)
+...+....++ ....+.+.|+++++
T Consensus 79 V~Spgi~~~~p-~~~~a~~~gi~v~~ 103 (473)
T PRK00141 79 VTSPGWRPDSP-LLVDAQSQGLEVIG 103 (473)
T ss_pred EeCCCCCCCCH-HHHHHHHCCCceee
Confidence 87765543443 44566788999874
No 198
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.87 E-value=1.4 Score=47.25 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=56.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCc--cccccC--eeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~--~~~~ad--~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
.++|+|+|+|.+|..+++.+++.|++|++++........ ...+.+ -.+..+. ..+ ....+|.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~--------~~~------~~~~~D~ 81 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGP--------GPT------LPEDTDL 81 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECC--------Ccc------ccCCCCE
Confidence 578999999999999999999999999988532211110 011111 1122210 000 1245899
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeCCCHHH
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~ 178 (523)
|+.+.|....+ .+...+++.|+++++ ..+.
T Consensus 82 Vv~s~Gi~~~~-~~~~~a~~~gi~v~~-~~e~ 111 (480)
T PRK01438 82 VVTSPGWRPDA-PLLAAAADAGIPVWG-EVEL 111 (480)
T ss_pred EEECCCcCCCC-HHHHHHHHCCCeecc-hHHH
Confidence 98877754333 445566788999874 4444
No 199
>PRK06483 dihydromonapterin reductase; Provisional
Probab=87.86 E-value=2.3 Score=40.54 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.5
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|.|++||.|+ +.+|..+++.+.+.|++|++++.+
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 35 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRT 35 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence 5789999996 678999999999999999988643
No 200
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=87.84 E-value=1.1 Score=42.32 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=29.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|+|||+|+|..+.+=++.+.+.|.+++++.+.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 478999999999999999999999999999543
No 201
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=87.76 E-value=3.1 Score=43.99 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=58.8
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-------ccccCeeEEcCCCCCCCCCCCHHHHHHHHHHc
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-------VKLADESVCIGEAPSSQSYLLIPNVLSAAISR 142 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-------~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (523)
..+++.|.|.......+.+.+.++|.+++++..+....... ....+....++ ..|..++.+++++.
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~-------~~d~~e~~~~l~~~ 371 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILD-------GADFFDIESYAKEL 371 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEe-------CCCHHHHHHHHHhc
Confidence 46789999988888999999999999987665332211111 11123333322 35778888888888
Q ss_pred CCCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 143 GCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 143 ~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
++|.++... .-..+++++|+|++
T Consensus 372 ~~dliiG~s-------~~~~~a~~~~ip~~ 394 (429)
T cd03466 372 KIDVLIGNS-------YGRRIAEKLGIPLI 394 (429)
T ss_pred CCCEEEECc-------hhHHHHHHcCCCEE
Confidence 999888532 12356677888765
No 202
>PRK12829 short chain dehydrogenase; Provisional
Probab=87.66 E-value=1.4 Score=42.69 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=47.2
Q ss_pred CCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-ccccC---eeEEcCCCCCCCCCCCHHHHHHHHHH--
Q 009903 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLAD---ESVCIGEAPSSQSYLLIPNVLSAAIS-- 141 (523)
Q Consensus 69 ~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-~~~ad---~~~~~~~~~~~~~~~~~~~l~~~~~~-- 141 (523)
.+.+++||+|+ |.+|..+++.+.+.|++|+++..+....... ....+ ..+.+ +..+.+.+.++.++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~ 81 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVA-------DVADPAQVERVFDTAV 81 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEc-------cCCCHHHHHHHHHHHH
Confidence 34589999996 6789999999999999998886432211110 01111 12222 35566665554443
Q ss_pred ---cCCCEEEeCCC
Q 009903 142 ---RGCTMLHPGYG 152 (523)
Q Consensus 142 ---~~id~Vi~~~g 152 (523)
.++|+|+-..+
T Consensus 82 ~~~~~~d~vi~~ag 95 (264)
T PRK12829 82 ERFGGLDVLVNNAG 95 (264)
T ss_pred HHhCCCCEEEECCC
Confidence 37899886543
No 203
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.64 E-value=1.7 Score=41.72 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=47.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-cccc--C--eeEEcCCCCCCCCCCCHHHHHHHHHHc--
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLA--D--ESVCIGEAPSSQSYLLIPNVLSAAISR-- 142 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-~~~a--d--~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 142 (523)
.+++||+|+ |.+|..+++.+.+.|++|+++..+.+..... ..+. . ..+.. +..+.+.+.+++++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAA-------DVSDEADVEAAVAAALE 77 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEEC-------CCCCHHHHHHHHHHHHH
Confidence 468999996 6789999999999999998886443221110 1111 1 12222 356666666655443
Q ss_pred ---CCCEEEeCCC
Q 009903 143 ---GCTMLHPGYG 152 (523)
Q Consensus 143 ---~id~Vi~~~g 152 (523)
++|+|+-..+
T Consensus 78 ~~~~~d~vi~~ag 90 (251)
T PRK07231 78 RFGSVDILVNNAG 90 (251)
T ss_pred HhCCCCEEEECCC
Confidence 6899886554
No 204
>PRK08643 acetoin reductase; Validated
Probab=87.62 E-value=1.7 Score=41.99 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=28.7
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|.|++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999986 678999999999999999888543
No 205
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.59 E-value=2.5 Score=40.50 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=66.1
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
-+.++|+|+|.|..|..+++.+.+.|+.-+.+. |.+.... ..+..+++.-. .+. .....+.+.+.+++..++.-+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lv-D~D~ve~-sNL~Rq~l~~~--~di-G~~Ka~~~~~~l~~~np~~~i 93 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLV-DDDVVEL-SNLQRQILHTE--ADV-GQPKAEAAAERLRAINPDVEI 93 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEE-cCCEEcC-cccccccccCh--hhC-CChHHHHHHHHHHHhCCCCEE
Confidence 346799999999999999999999999655553 3332211 22222222210 001 123456677777777766433
Q ss_pred eCC-CcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 009903 149 PGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201 (523)
Q Consensus 149 ~~~-g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~ 201 (523)
-.. .... .....+.+....+-+...+.- ..+....+.+.++++|..-
T Consensus 94 ~~~~~~i~-~~~~~~~~~~~DvVi~~~d~~-----~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 94 EAYNERLD-AENAEELIAGYDLVLDCTDNF-----ATRYLINDACVKLGKPLVS 141 (228)
T ss_pred EEecceeC-HHHHHHHHhCCCEEEEcCCCH-----HHHHHHHHHHHHcCCCEEE
Confidence 222 1111 123334455455443332221 2345667778888877653
No 206
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.56 E-value=1.3 Score=47.10 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=30.0
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
|+|+|+|.|..|..+++.+.+.|+++++++.+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999965443
No 207
>PRK08264 short chain dehydrogenase; Validated
Probab=87.56 E-value=3.3 Score=39.39 Aligned_cols=74 Identities=18% Similarity=0.091 Sum_probs=47.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCC-cEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHc-CCCEE
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML 147 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~-~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~-~id~V 147 (523)
.++|||+|+ |.+|..+++.+.+.|+ .|+++..+.+.... .......+. .+..+.+.+.++.+.. .+|+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~-----~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQ-----LDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEE-----ecCCCHHHHHHHHHhcCCCCEE
Confidence 468999985 7899999999999999 88888644332111 111111111 1355666776666554 47888
Q ss_pred EeCCC
Q 009903 148 HPGYG 152 (523)
Q Consensus 148 i~~~g 152 (523)
+-..+
T Consensus 78 i~~ag 82 (238)
T PRK08264 78 VNNAG 82 (238)
T ss_pred EECCC
Confidence 86544
No 208
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.55 E-value=1.3 Score=47.11 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=54.5
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCc--cccc---cCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKL---ADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~--~~~~---ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id 145 (523)
.|+++|+|+|..|..+++.+.+.|++|++++.+...... ..++ .-..+. . +..+ . ...++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~------~~~~--~-----~~~~~d 70 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVL-G------EYPE--E-----FLEGVD 70 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEe-C------Ccch--h-----HhhcCC
Confidence 589999999999999999999999999998643211100 0111 111111 1 1111 1 123589
Q ss_pred EEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 146 ~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
+|+.+.+.. .+-.....+++.|++++
T Consensus 71 ~vv~~~g~~-~~~~~~~~a~~~~i~~~ 96 (450)
T PRK14106 71 LVVVSPGVP-LDSPPVVQAHKKGIEVI 96 (450)
T ss_pred EEEECCCCC-CCCHHHHHHHHCCCcEE
Confidence 998877653 33345667788899987
No 209
>PRK07577 short chain dehydrogenase; Provisional
Probab=87.35 E-value=3.2 Score=39.29 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=44.9
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHH----HHHcCCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA----AISRGCT 145 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~----~~~~~id 145 (523)
.|++||+|+ |.+|..+++.+.+.|++|+++..+... ....+.+..+ ..+.+.+.++ .+..++|
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~-----~~~~~~~~~D-------~~~~~~~~~~~~~~~~~~~~d 70 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID-----DFPGELFACD-------LADIEQTAATLAQINEIHPVD 70 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc-----ccCceEEEee-------CCCHHHHHHHHHHHHHhCCCc
Confidence 368999986 678999999999999999998644332 1112333332 4444444333 3335789
Q ss_pred EEEeCCC
Q 009903 146 MLHPGYG 152 (523)
Q Consensus 146 ~Vi~~~g 152 (523)
.|+-..+
T Consensus 71 ~vi~~ag 77 (234)
T PRK07577 71 AIVNNVG 77 (234)
T ss_pred EEEECCC
Confidence 8886544
No 210
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.31 E-value=4.5 Score=39.20 Aligned_cols=31 Identities=13% Similarity=0.319 Sum_probs=26.8
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v 100 (523)
..++|+|+|.|..|..+++.+...|+.-+.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~l 61 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTL 61 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 4679999999999999999999999864444
No 211
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.29 E-value=2.3 Score=46.21 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 69 ~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+.++|||+|+ |.+|..+++.|.+.|++|+++..+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35678999996 789999999999999999988543
No 212
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.24 E-value=2.5 Score=40.24 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=27.3
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
++|+|||+|+ |.+|..+++.+.+.|++++++.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVVHY 37 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEe
Confidence 3578999986 7789999999999999987754
No 213
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=87.23 E-value=2 Score=41.07 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=28.9
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+.|+|||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999995 778999999999999999888543
No 214
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.21 E-value=3.1 Score=44.48 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=57.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-ccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
.++|+|+|.|.+|..+++.|++.|.+|++.+.+....... ..+.+....+. ...+.+.+ ..+|.|+.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~------~~~d~vV~ 75 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVE------TEASAQRL------AAFDVVVK 75 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEe------CCCChHHc------cCCCEEEE
Confidence 5789999999999999999999999999986432222111 11211111110 01122222 34899988
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHH
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDS 178 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~ 178 (523)
..+....+ ...+.+.+.|+++++ ..+.
T Consensus 76 SpgI~~~~-p~~~~a~~~~i~i~~-~~el 102 (468)
T PRK04690 76 SPGISPYR-PEALAAAARGTPFIG-GTAL 102 (468)
T ss_pred CCCCCCCC-HHHHHHHHcCCcEEE-HHHH
Confidence 77654333 445666788999874 4443
No 215
>PRK06953 short chain dehydrogenase; Provisional
Probab=87.06 E-value=2.3 Score=40.17 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=45.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHH---HHcCCCE
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA---ISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~---~~~~id~ 146 (523)
|++++|+|+ |.+|..+++.+.+.|+++++++.+...........-+.+.. +..+.+.+.++. ...++|+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~-------D~~~~~~v~~~~~~~~~~~~d~ 73 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALAL-------DVADPASVAGLAWKLDGEALDA 73 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEe-------cCCCHHHHHHHHHHhcCCCCCE
Confidence 467899985 67899999999999999999864432211111110122222 244455555543 2336898
Q ss_pred EEeCCCc
Q 009903 147 LHPGYGF 153 (523)
Q Consensus 147 Vi~~~g~ 153 (523)
|+-..+.
T Consensus 74 vi~~ag~ 80 (222)
T PRK06953 74 AVYVAGV 80 (222)
T ss_pred EEECCCc
Confidence 8865443
No 216
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=86.90 E-value=2.9 Score=42.30 Aligned_cols=72 Identities=11% Similarity=-0.039 Sum_probs=46.0
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcc----cccc---CeeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLA---DESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~----~~~a---d~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
|+|||+|+ |.+|..+++.+.+.|++|++++......... .... ...+.. +..+.+.+.++....+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEG-------DIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEc-------cCCCHHHHHHHHhcCC
Confidence 47999995 8899999999999999999884221111100 0001 112222 3566777777776667
Q ss_pred CCEEEeC
Q 009903 144 CTMLHPG 150 (523)
Q Consensus 144 id~Vi~~ 150 (523)
+|.|+-.
T Consensus 74 ~d~vvh~ 80 (338)
T PRK10675 74 IDTVIHF 80 (338)
T ss_pred CCEEEEC
Confidence 9988754
No 217
>PRK00124 hypothetical protein; Validated
Probab=86.85 E-value=17 Score=32.23 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=69.7
Q ss_pred EEEEEc-CcHHHHHHHHHHHHcCCcEEEEecCCCC-CCccccccCeeEEcCCCCCCCCCCCH-HHHHHHHHHcCCCEEEe
Q 009903 73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK-DALHVKLADESVCIGEAPSSQSYLLI-PNVLSAAISRGCTMLHP 149 (523)
Q Consensus 73 ~ILi~g-~g~~~~~vi~aa~~~G~~vi~v~~~~~~-~~~~~~~ad~~~~~~~~~~~~~~~~~-~~l~~~~~~~~id~Vi~ 149 (523)
+|+|=+ +.+.-..+.+.+++.|++++++.+.... ..+...+. +.+.++.. .+.. ..|++.++. -|.|++
T Consensus 2 ~I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v-~~v~V~~g-----~D~AD~~Iv~~~~~--gDiVIT 73 (151)
T PRK00124 2 KIYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFI-RTVYVDAG-----FDAADNEIVQLAEK--GDIVIT 73 (151)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCce-EEEEeCCC-----CChHHHHHHHhCCC--CCEEEe
Confidence 466644 4555566889999999999998532211 11112222 23445411 1111 245555543 488885
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCC-----HHHHHHhCCHHHHHHHHHHCCCCC--CCCCCccCCCHHHHHHHHHh
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPN-----PDSIRIMGDKSTARETMKNAGVPT--VPGSDGLLQSTEEAVKLADE 219 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~-----~~~~~~~~dK~~~r~~l~~~Gip~--p~~~~~~~~s~~e~~~~~~~ 219 (523)
.+..++..+-..|..++.|. .+.+.....-..+.+-+++.|.-+ |+- .+.+|-..|++.
T Consensus 74 ------~Di~LAa~~l~Kga~vl~prG~~yt~~nI~~~L~~R~~~~~lR~~G~~t~Gp~~-----~~~~Dr~~F~~~ 139 (151)
T PRK00124 74 ------QDYGLAALALEKGAIVLNPRGYIYTNDNIDQLLAMRDLMATLRRSGIRTGGPKP-----FTQEDRSRFEAE 139 (151)
T ss_pred ------CCHHHHHHHHHCCCEEECCCCcCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-----CCHHHHHHHHHH
Confidence 35567777777777666543 445555544445555567778754 332 344554455443
No 218
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.77 E-value=1.4 Score=38.47 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=28.7
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~ 101 (523)
..+++||+|+|..+..++.++.++|++ +++++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 468999999999999999999999999 66664
No 219
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=86.77 E-value=2.1 Score=43.60 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=27.0
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEe
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEM-GIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~-G~~vi~v~ 101 (523)
||+|||+|+ |.+|..+++.+.+. |++|+.++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 357999997 88999999999886 79999885
No 220
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.71 E-value=6 Score=38.35 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=72.5
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
++|||+|+ |..|..+++.|.+.|++|.++..+++...... ..-.+.. .++.+...+...++ +.|.++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~~------~d~~~~~~l~~a~~--G~~~~~~i 70 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVVL------GDLRDPKSLVAGAK--GVDGVLLI 70 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEEE------eccCCHhHHHHHhc--cccEEEEE
Confidence 47999986 77899999999999999999976655443333 2222222 24667777776664 46665543
Q ss_pred CCcc--------cccHHHHHHHHHcC--Cc------eeCCCH-HHHHHhCCHHHHHHHHHHCCCC
Q 009903 151 YGFL--------AENAVFVEMCREHG--IN------FIGPNP-DSIRIMGDKSTARETMKNAGVP 198 (523)
Q Consensus 151 ~g~~--------~e~~~~a~~~~~~g--l~------~~g~~~-~~~~~~~dK~~~r~~l~~~Gip 198 (523)
.... .+...+....+..+ .. .++... ........|...-+.+...|++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~ 135 (275)
T COG0702 71 SGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIP 135 (275)
T ss_pred ecccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCC
Confidence 3211 01112333444433 21 233332 4466678899999999999999
No 221
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=86.57 E-value=2.9 Score=37.58 Aligned_cols=89 Identities=11% Similarity=0.176 Sum_probs=48.0
Q ss_pred cEEEEEcCcHHHHHHHHHHHH---cCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 72 EKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
++.+++|.+..+..+++.+.+ .|++++.+.++ ++...........+ + .+.+++.+++++.++|-|+
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~-~~~~~~~~~~~~~~-l---------g~~~~l~~~~~~~~id~v~ 146 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDD-DPSDRGPEIDGVPV-L---------GDLDDLPELVREHDIDEVI 146 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S--GGGTT-EETTEEE-E-----------GGGHHHHHHHHT--EEE
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeC-chhhccCcccCcee-E---------cCHHHHHHHHHhCCCCEEE
Confidence 445677777777777777766 79998877533 22222222323223 2 3567899999999999988
Q ss_pred eCCCccccc--HHHHHHHHHcCCce
Q 009903 149 PGYGFLAEN--AVFVEMCREHGINF 171 (523)
Q Consensus 149 ~~~g~~~e~--~~~a~~~~~~gl~~ 171 (523)
.......+. ..+.+.+++.|+.+
T Consensus 147 ial~~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 147 IALPWSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp E--TTS-HHHHHHHHHHHHTTT-EE
T ss_pred EEcCccCHHHHHHHHHHHHhCCCEE
Confidence 764322111 35566777777754
No 222
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=86.57 E-value=3.6 Score=43.51 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=59.2
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
.|++.|.+.......+++.+.++|.+++.+........ ...+....+. ..|..++.+++++.++|.++..
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~-~~~~~~~~~~---------~~D~~~l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPL-LQKLPVETVV---------IGDLEDLEDLACAAGADLLITN 380 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHH-HHhCCcCcEE---------eCCHHHHHHHHhhcCCCEEEEC
Confidence 58899998888889999999999999988865443222 1222222222 2467788888999999999954
Q ss_pred CCcccccHHHHHHHHHcCCcee
Q 009903 151 YGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
. .-..+++++|+|++
T Consensus 381 s-------~~k~~A~~l~ip~i 395 (432)
T TIGR01285 381 S-------HGRALAQRLALPLV 395 (432)
T ss_pred c-------chHHHHHHcCCCEE
Confidence 3 11256677888765
No 223
>PRK07856 short chain dehydrogenase; Provisional
Probab=86.55 E-value=4.5 Score=38.94 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=28.8
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
.|++||+|+ |.+|..+++.+.+.|++|++++.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 578999986 6789999999999999999886443
No 224
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=86.55 E-value=4.2 Score=43.20 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=55.4
Q ss_pred ccEEEEEcCcHHHHHHHHHHHH---cCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
.++++|+|+|..+..+++++++ .|++++.+..+. +..... ... +. -..+.+++.+++++.++|.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~-~~~~~~-~~g--vp--------Vlg~~~dl~~~i~~~~vd~V 195 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDR-PDARTG-VRG--VP--------VLGKLDDLEELIREGEVDEV 195 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCC-Cccccc-cCC--CC--------ccCCHHHHHHHHHhcCCCEE
Confidence 4689999999999999999876 478887765322 111111 111 11 13457789999999999988
Q ss_pred EeCCCcccc--cHHHHHHHHHcCCce
Q 009903 148 HPGYGFLAE--NAVFVEMCREHGINF 171 (523)
Q Consensus 148 i~~~g~~~e--~~~~a~~~~~~gl~~ 171 (523)
+........ ...+.+.++..|+.+
T Consensus 196 iIA~p~~~~~~~~~ll~~~~~~gv~V 221 (451)
T TIGR03023 196 YIALPLAAEDRILELLDALEDLTVDV 221 (451)
T ss_pred EEeeCcccHHHHHHHHHHHHhcCCEE
Confidence 865432111 123445556666643
No 225
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=86.53 E-value=3.7 Score=43.86 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=56.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHc---CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEM---GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~---G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
.++++|+|+|+.|..+++++++. |++++.+.++. +.. . ..+ .-..+.+++.++++++++|-|
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd-~~~---g-----~~V------pvlG~~~dL~~~v~~~~IdeV 207 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDP-KPG---G-----VSN------DWAGNLQQLVEDAKAGKIHNV 207 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCC-ccc---c-----CCC------CcCCCHHHHHHHHHhCCCCEE
Confidence 46799999999999999998764 78888775332 110 0 001 013467789999999999988
Q ss_pred EeCCCccccc--HHHHHHHHHcCCce
Q 009903 148 HPGYGFLAEN--AVFVEMCREHGINF 171 (523)
Q Consensus 148 i~~~g~~~e~--~~~a~~~~~~gl~~ 171 (523)
+......... ..+.+.++..++.+
T Consensus 208 iIAip~~~~~~l~ell~~~~~~~v~V 233 (463)
T PRK10124 208 YIAMSMCDGARVKKLVRQLADTTCSV 233 (463)
T ss_pred EEeCCCcchHHHHHHHHHHHHcCCeE
Confidence 8764332211 24455666677654
No 226
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.51 E-value=3.1 Score=41.42 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=47.0
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC-CCCCccccc-cCeeEEcCCCCCCCCCCCHHHHHHHHHH--cCCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI-DKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAIS--RGCT 145 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~-~~~~~~~~~-ad~~~~~~~~~~~~~~~~~~~l~~~~~~--~~id 145 (523)
+.++|.|+|.|.+|...++.|+.+|++|++++... ........+ ||.++. ...+.+.+.++.+. ..+|
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~--------~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVD--------STEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEE--------ecCCHHHHHHHHHhhcCcce
Confidence 46899999988899999999999999999997543 222222334 344432 24466777666554 2344
Q ss_pred EEE
Q 009903 146 MLH 148 (523)
Q Consensus 146 ~Vi 148 (523)
.+.
T Consensus 253 ~v~ 255 (360)
T KOG0023|consen 253 TVS 255 (360)
T ss_pred eee
Confidence 444
No 227
>PLN02240 UDP-glucose 4-epimerase
Probab=86.47 E-value=3.8 Score=41.67 Aligned_cols=74 Identities=12% Similarity=-0.036 Sum_probs=48.1
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCc-cccc-------cC--eeEEcCCCCCCCCCCCHHHHHHH
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKL-------AD--ESVCIGEAPSSQSYLLIPNVLSA 138 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~-~~~~-------ad--~~~~~~~~~~~~~~~~~~~l~~~ 138 (523)
+.++|||+|+ |.+|..+++.+.+.|++|++++........ .... .. ..+. .+..+.+.+.++
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~D~~~~~~l~~~ 76 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHK-------VDLRDKEALEKV 76 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEe-------cCcCCHHHHHHH
Confidence 3578999986 789999999999999999888522111100 0000 01 1222 246677788887
Q ss_pred HHHcCCCEEEeC
Q 009903 139 AISRGCTMLHPG 150 (523)
Q Consensus 139 ~~~~~id~Vi~~ 150 (523)
.++.++|.|+-.
T Consensus 77 ~~~~~~d~vih~ 88 (352)
T PLN02240 77 FASTRFDAVIHF 88 (352)
T ss_pred HHhCCCCEEEEc
Confidence 776789988754
No 228
>PLN02686 cinnamoyl-CoA reductase
Probab=86.47 E-value=2.1 Score=44.11 Aligned_cols=35 Identities=6% Similarity=0.091 Sum_probs=29.7
Q ss_pred cCCCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 67 VTCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 67 ~~~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
...++|+|||+|+ |.+|..+++.+.+.|++|+++.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~ 84 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAV 84 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEe
Confidence 3445789999997 7899999999999999998764
No 229
>PRK08219 short chain dehydrogenase; Provisional
Probab=86.39 E-value=1.6 Score=41.09 Aligned_cols=75 Identities=9% Similarity=0.015 Sum_probs=46.7
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccc-cccC-eeEEcCCCCCCCCCCCHHHHHHHHHHc-CCC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLAD-ESVCIGEAPSSQSYLLIPNVLSAAISR-GCT 145 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~-~~ad-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~id 145 (523)
|+|++||+|+ |.+|..+++.+.+. ++|+++..+........ ...+ +.+.. +..+.+.+.++.... ++|
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~id 73 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPV-------DLTDPEAIAAAVEQLGRLD 73 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEec-------CCCCHHHHHHHHHhcCCCC
Confidence 3578999986 77899999999998 99998864322111000 1111 12222 456677777766653 689
Q ss_pred EEEeCCC
Q 009903 146 MLHPGYG 152 (523)
Q Consensus 146 ~Vi~~~g 152 (523)
+|+-..+
T Consensus 74 ~vi~~ag 80 (227)
T PRK08219 74 VLVHNAG 80 (227)
T ss_pred EEEECCC
Confidence 8885543
No 230
>PRK07024 short chain dehydrogenase; Provisional
Probab=86.36 E-value=2.2 Score=41.25 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=29.0
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|+|++||+|+ |.+|..+++.+.+.|+++++++.+
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARR 35 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999985 678999999999999999988643
No 231
>PRK07074 short chain dehydrogenase; Provisional
Probab=86.31 E-value=2.4 Score=40.87 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=46.6
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCC-cccccc-C--eeEEcCCCCCCCCCCCHHHHHHHHHH---
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLA-D--ESVCIGEAPSSQSYLLIPNVLSAAIS--- 141 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~-~~~~~a-d--~~~~~~~~~~~~~~~~~~~l~~~~~~--- 141 (523)
|.|++||+|+ |.+|..+++.+.+.|+++++++.+..... ....+. . +.+.+ +..+.+.+.....+
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVAC-------DLTDAASLAAALANAAA 73 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEe-------cCCCHHHHHHHHHHHHH
Confidence 4578999996 67999999999999999988854322110 001111 1 12222 35566666554443
Q ss_pred --cCCCEEEeCCC
Q 009903 142 --RGCTMLHPGYG 152 (523)
Q Consensus 142 --~~id~Vi~~~g 152 (523)
.++|.|+-..+
T Consensus 74 ~~~~~d~vi~~ag 86 (257)
T PRK07074 74 ERGPVDVLVANAG 86 (257)
T ss_pred HcCCCCEEEECCC
Confidence 25898886654
No 232
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=86.29 E-value=2.8 Score=43.52 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=60.9
Q ss_pred CccEEEEEcC--cHHHHHHHHHHHHcCCcEEEEecC----------CCCCCccccccCeeEEcCCCC---CCCC-CCCHH
Q 009903 70 RQEKILVANR--GEIAVRVIRTAHEMGIPCVAVYST----------IDKDALHVKLADESVCIGEAP---SSQS-YLLIP 133 (523)
Q Consensus 70 ~~k~ILi~g~--g~~~~~vi~aa~~~G~~vi~v~~~----------~~~~~~~~~~ad~~~~~~~~~---~~~~-~~~~~ 133 (523)
..+|||+.|. ......+++.+.+.|..|+.-+.- .....+...+|+.+.....+. .... ....+
T Consensus 232 ~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e~~dp~~aLA~~Yl~~~~~c~~~~~~~~~~R~~ 311 (380)
T TIGR02263 232 DNCRVIICGMFCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVALAGDPLQNLALAFLHDSISTAAKYDDDEADKGK 311 (380)
T ss_pred CCCEEEEECcCCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCCCCCHHHHHHHHHhhCCCCCccccCCChhhHHH
Confidence 4689999993 223467888999999998866320 002233455676664321111 1111 12567
Q ss_pred HHHHHHHHcCCCEEEeCC-----CcccccHHHHHHHHHcCCcee
Q 009903 134 NVLSAAISRGCTMLHPGY-----GFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 134 ~l~~~~~~~~id~Vi~~~-----g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.+.++++++++|+|+-.. -+..+...+.+.+++.|+|++
T Consensus 312 ~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L 355 (380)
T TIGR02263 312 YLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQI 355 (380)
T ss_pred HHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEE
Confidence 899999999999998531 111233445566666677655
No 233
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.24 E-value=5.5 Score=41.27 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=28.6
Q ss_pred CCCccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009903 68 TCRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (523)
Q Consensus 68 ~~~~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~ 101 (523)
+-+.++|+|+|.|..|..+++.+.+.|+. +++++
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD 166 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVD 166 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 34568999999999999999999999995 55553
No 234
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.17 E-value=4.5 Score=43.12 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=54.0
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcc--ccccC--eeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~--~~~ad--~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
.++|+|+|.|..|..+++.|++.|++|.+.+......... ..+.. -.+..+ ....+.+ .++|.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~~~~------~~~dl 80 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLG-------ENYLDKL------DGFDV 80 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeC-------CCChHHh------ccCCE
Confidence 4689999999999999999999999999885432211111 11211 122211 1112222 34788
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeC
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIG 173 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g 173 (523)
|+.+.+....+ .....+++.|+++++
T Consensus 81 VV~Spgi~~~~-p~~~~a~~~~i~i~s 106 (458)
T PRK01710 81 IFKTPSMRIDS-PELVKAKEEGAYITS 106 (458)
T ss_pred EEECCCCCCCc-hHHHHHHHcCCcEEe
Confidence 88776543333 445566678898874
No 235
>PRK07454 short chain dehydrogenase; Provisional
Probab=86.16 E-value=2.1 Score=40.86 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=29.1
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+|++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999986 778999999999999999988643
No 236
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.12 E-value=1.9 Score=40.99 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=27.9
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.++|+|+|+ |.+|..+++.+.+.|++|+++..
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 478999986 77999999999999999988854
No 237
>PRK06057 short chain dehydrogenase; Provisional
Probab=86.01 E-value=2.7 Score=40.55 Aligned_cols=75 Identities=9% Similarity=-0.037 Sum_probs=46.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-ccccCeeEEcCCCCCCCCCCCHHHHHHHHHH-----cC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RG 143 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~ 143 (523)
.++|+|+|+ |.+|..+++.+.+.|+++++++.+....... ..+....+.+ +..+.+.+.++..+ .+
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPT-------DVTDEDAVNALFDTAAETYGS 79 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEe-------eCCCHHHHHHHHHHHHHHcCC
Confidence 578999997 7789999999999999999885432211111 1111123333 24455555544443 26
Q ss_pred CCEEEeCCC
Q 009903 144 CTMLHPGYG 152 (523)
Q Consensus 144 id~Vi~~~g 152 (523)
+|.|+-..+
T Consensus 80 id~vi~~ag 88 (255)
T PRK06057 80 VDIAFNNAG 88 (255)
T ss_pred CCEEEECCC
Confidence 898876544
No 238
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.00 E-value=11 Score=39.96 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=56.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-ccccCe--eEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADE--SVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-~~~ad~--~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
.|+|+|+|.|.+|..+++.+.+.|++|++.+.+....... ..+.+. .+..+ .+...+. ..++|.|
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--------~~~~~~~----~~~~d~v 72 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICG--------SHPLELL----DEDFDLM 72 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeC--------CCCHHHh----cCcCCEE
Confidence 4789999999999999999999999999885433221111 111111 11111 1111221 1248988
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCCCHHHH
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~ 179 (523)
+...+....+ ...+.+.+.|+++++ ..+..
T Consensus 73 V~s~gi~~~~-~~~~~a~~~~i~v~~-~~el~ 102 (447)
T PRK02472 73 VKNPGIPYTN-PMVEKALEKGIPIIT-EVELA 102 (447)
T ss_pred EECCCCCCCC-HHHHHHHHCCCcEEe-HHHHH
Confidence 8776544333 455667788999874 44443
No 239
>PRK06482 short chain dehydrogenase; Provisional
Probab=86.00 E-value=2.4 Score=41.55 Aligned_cols=33 Identities=6% Similarity=0.014 Sum_probs=28.6
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|.|++||+|+ |.+|..+++.+.+.|++|+++..
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r 34 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARGDRVAATVR 34 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4578999996 78999999999999999988854
No 240
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.95 E-value=2.1 Score=41.04 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=26.6
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v 100 (523)
+..+|+|+|.|..|..+++.+.+.|+.-+.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~L 40 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTL 40 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 3578999999999999999999999954444
No 241
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.95 E-value=1.6 Score=45.12 Aligned_cols=32 Identities=9% Similarity=0.220 Sum_probs=28.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
..+|+|+|.|..|..+++.|+.+|.+|++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~ 198 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDI 198 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 35699999999999999999999999888854
No 242
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=85.95 E-value=2.5 Score=41.60 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=44.2
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCC
Q 009903 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY 151 (523)
Q Consensus 73 ~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~ 151 (523)
+|||+|+ |.+|..+++.+.+.|++|+++... . .+..+.+.+.+.++..++|.|+-..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------~-------~d~~~~~~~~~~~~~~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS---------------Q-------LDLTDPEALERLLRAIRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------c-------cCCCCHHHHHHHHHhCCCCEEEECC
Confidence 4899996 889999999999999999888421 1 1355677888888877789988543
No 243
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=85.78 E-value=2.7 Score=39.96 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.++|||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999996 778999999999999998888544
No 244
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.72 E-value=2.1 Score=41.33 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=29.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
.|++||.|+ |.+|..+++.+.+.|++|+++..+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 578999997 7899999999999999999885443
No 245
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=85.68 E-value=3.8 Score=43.67 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=56.3
Q ss_pred ccEEEEEcCcHHHHH-HHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 71 QEKILVANRGEIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~-vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
.++|+|+|-|.+|.. +++.|+++|++|.+.+..... ....+...-+.+. ... +.+.+ .++|.|+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~--~~~~l~~~gi~~~-----~~~-~~~~~------~~~d~vv~ 72 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA--VTQRLLELGAIIF-----IGH-DAENI------KDADVVVY 72 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh--HHHHHHHCCCEEe-----CCC-CHHHC------CCCCEEEE
Confidence 468999999999999 799999999999988543221 1111211111110 001 22222 25888888
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHH
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~ 179 (523)
..+....++ ....+.+.|+++++ ..+.+
T Consensus 73 spgi~~~~~-~~~~a~~~~i~i~~-~~e~~ 100 (461)
T PRK00421 73 SSAIPDDNP-ELVAARELGIPVVR-RAEML 100 (461)
T ss_pred CCCCCCCCH-HHHHHHHCCCcEEe-HHHHH
Confidence 776543444 44556678899874 45554
No 246
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=85.68 E-value=3.5 Score=42.10 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=28.6
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+|+|||+|+ |-+|..+++.+.+.|++|++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 478999996 88999999999999999998853
No 247
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.60 E-value=3.8 Score=39.43 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=28.4
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|.|++||+|+ |.+|..+++.+.+.|+++++++.
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r 34 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDR 34 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 4578999986 67899999999999999998863
No 248
>PRK09620 hypothetical protein; Provisional
Probab=85.48 E-value=3.5 Score=39.57 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHcCCcEEEEec
Q 009903 80 GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 80 g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|.+|..+++++.+.|++|++++.
T Consensus 29 GfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 29 GTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeC
Confidence 67799999999999999999963
No 249
>PRK05865 hypothetical protein; Provisional
Probab=85.44 E-value=10 Score=43.47 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=67.1
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
|+|||+|+ |.+|..+++.+.+.|++|++++...... ... .-..+.. +..+.+.+.++.+ ++|.|+-.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--~~~-~v~~v~g-------DL~D~~~l~~al~--~vD~VVHl 68 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--WPS-SADFIAA-------DIRDATAVESAMT--GADVVAHC 68 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--ccc-CceEEEe-------eCCCHHHHHHHHh--CCCEEEEC
Confidence 37999996 8899999999999999999885432110 000 0112222 3566677766665 48988765
Q ss_pred CCcccc----c----HHHHHHHHHcCCc-eeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 009903 151 YGFLAE----N----AVFVEMCREHGIN-FIGPNPDSIRIMGDKSTARETMKNAGVPTV 200 (523)
Q Consensus 151 ~g~~~e----~----~~~a~~~~~~gl~-~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p 200 (523)
.+.... + ..+.+.+.+.|+. ++..|... |...-+++.+.|+++.
T Consensus 69 Aa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------K~aaE~ll~~~gl~~v 121 (854)
T PRK05865 69 AWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH------QPRVEQMLADCGLEWV 121 (854)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------HHHHHHHHHHcCCCEE
Confidence 322111 1 1345666666652 33223222 7777788888888754
No 250
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=85.29 E-value=2.7 Score=40.28 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=27.7
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
|+|+|||+|+ +.+|..+++.+.+.|++++++.
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINY 33 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 6789999996 5689999999999999987764
No 251
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=85.25 E-value=3.4 Score=40.59 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=48.0
Q ss_pred cEEEEEcCcHHHHHHHHHHHHc--CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
++|.|+|.|.+|..+++.+.+. +++++.+. +.+... ...+++..- . ..+.+.++++ .++|.|+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~-a~~~a~~~~-~------~~~~~~~ell-----~~~DvVvi 67 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFY-DRNLEK-AENLASKTG-A------KACLSIDELV-----EDVDLVVE 67 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEE-CCCHHH-HHHHHHhcC-C------eeECCHHHHh-----cCCCEEEE
Confidence 5899999999999999998876 46655543 332211 112222110 0 1134555554 35899986
Q ss_pred CCCcccccHHHHHHHHHcCCceeC
Q 009903 150 GYGFLAENAVFVEMCREHGINFIG 173 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g 173 (523)
+... .....+...+.+.|..++.
T Consensus 68 ~a~~-~~~~~~~~~al~~Gk~Vvv 90 (265)
T PRK13304 68 CASV-NAVEEVVPKSLENGKDVII 90 (265)
T ss_pred cCCh-HHHHHHHHHHHHcCCCEEE
Confidence 5421 1123344444456766654
No 252
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=85.22 E-value=3.9 Score=41.71 Aligned_cols=99 Identities=14% Similarity=0.019 Sum_probs=51.3
Q ss_pred cEEEEEcCcHHH-----HHHHHHHHHcCCcEEEEecCCCCCCcc-ccccCeeEEcCCCCCCCC------------CCCHH
Q 009903 72 EKILVANRGEIA-----VRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQS------------YLLIP 133 (523)
Q Consensus 72 k~ILi~g~g~~~-----~~vi~aa~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~~~~~~~~~~------------~~~~~ 133 (523)
++|+|+++|..| ..+++++.+.|++|.++.......... ....-..+.++....... .....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVL 81 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHH
Confidence 678888654432 368999999999999997543221111 111222333321111000 11123
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 134 ~l~~~~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.+.+++++.++|.|+...... .....-.....++|++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v 118 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLV 118 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEE
Confidence 445567788999999754221 1111122344567765
No 253
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=85.06 E-value=5.2 Score=36.67 Aligned_cols=89 Identities=12% Similarity=0.217 Sum_probs=63.4
Q ss_pred CCCccEEEEEcCcHHHHHHH--HHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009903 68 TCRQEKILVANRGEIAVRVI--RTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (523)
Q Consensus 68 ~~~~k~ILi~g~g~~~~~vi--~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id 145 (523)
...+-+++|+|.|.+|..++ .-.++.|++++.+. |.++........+ +. ..+.+++...+++.+++
T Consensus 81 ~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~F-Dv~~~~VG~~~~~--v~---------V~~~d~le~~v~~~dv~ 148 (211)
T COG2344 81 QDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAF-DVDPDKVGTKIGD--VP---------VYDLDDLEKFVKKNDVE 148 (211)
T ss_pred CCcceeEEEEccChHHHHHhcCcchhhcCceEEEEe-cCCHHHhCcccCC--ee---------eechHHHHHHHHhcCcc
Confidence 34467899999999998877 45668899998887 4555555666666 22 24678899999999999
Q ss_pred EEEeCCCccccc-HHHHHHHHHcCCc
Q 009903 146 MLHPGYGFLAEN-AVFVEMCREHGIN 170 (523)
Q Consensus 146 ~Vi~~~g~~~e~-~~~a~~~~~~gl~ 170 (523)
..+.+... +. ...++.+.+.|+.
T Consensus 149 iaiLtVPa--~~AQ~vad~Lv~aGVk 172 (211)
T COG2344 149 IAILTVPA--EHAQEVADRLVKAGVK 172 (211)
T ss_pred EEEEEccH--HHHHHHHHHHHHcCCc
Confidence 76655321 33 3666777777775
No 254
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.99 E-value=2.9 Score=45.01 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=37.9
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEc
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~ 120 (523)
....+|+|+|+|..|...+..|+.+|.+|++++..++......++--.++.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i 214 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL 214 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence 3468999999999999999999999999888865544333333443333333
No 255
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.98 E-value=1.2 Score=39.95 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=40.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
.|+++|+|-|..|..++++++.+|..|++. +.||........|-+-.. .+.+.++ ..|.++..
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~--e~DPi~alqA~~dGf~v~-------------~~~~a~~--~adi~vta 85 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVT--EIDPIRALQAAMDGFEVM-------------TLEEALR--DADIFVTA 85 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE---SSHHHHHHHHHTT-EEE--------------HHHHTT--T-SEEEE-
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEE--ECChHHHHHhhhcCcEec-------------CHHHHHh--hCCEEEEC
Confidence 588999999999999999999999999999 445444333344443321 1233332 46888876
Q ss_pred CCc
Q 009903 151 YGF 153 (523)
Q Consensus 151 ~g~ 153 (523)
+|-
T Consensus 86 TG~ 88 (162)
T PF00670_consen 86 TGN 88 (162)
T ss_dssp SSS
T ss_pred CCC
Confidence 653
No 256
>PRK06180 short chain dehydrogenase; Provisional
Probab=84.97 E-value=2.6 Score=41.38 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=28.6
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
++++||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 578999996 778999999999999999998643
No 257
>PRK12743 oxidoreductase; Provisional
Probab=84.96 E-value=3.5 Score=39.86 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=28.0
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
|+|++||+|+ +.+|..+++.+.+.|++|+++.
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~ 33 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITW 33 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5678999996 5689999999999999998874
No 258
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.87 E-value=6.2 Score=40.25 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCC-cEEEEec
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYS 102 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~-~vi~v~~ 102 (523)
-+.++|+|+|.|..|..+++.+.+.|+ ++.+++.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 346789999999999999999999999 6777743
No 259
>PRK09135 pteridine reductase; Provisional
Probab=84.82 E-value=3.5 Score=39.29 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=28.5
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+.++|||+|+ |.+|..+++.+.+.|++|+++..
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 3478999996 67899999999999999999853
No 260
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=84.77 E-value=2.9 Score=40.42 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=28.9
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|.|+|||+|+ |.+|..+++.+.+.|+++++++.+
T Consensus 1 m~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 1 MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999997 578999999999999999888643
No 261
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.75 E-value=3.1 Score=40.40 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|+++|+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999996 678999999999999999988543
No 262
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=84.74 E-value=3.5 Score=42.64 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=27.8
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~ 101 (523)
-+..+|+|+|.|..|..+++.+.+.|+. +++++
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD 72 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLID 72 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEe
Confidence 3467899999999999999999999985 55553
No 263
>PRK06138 short chain dehydrogenase; Provisional
Probab=84.68 E-value=3 Score=40.00 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=27.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|+++|+|+ |.+|..+++.+.+.|++++++..
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r 37 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADR 37 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecC
Confidence 468999986 67899999999999999988853
No 264
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.66 E-value=5.7 Score=37.56 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.5
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~ 101 (523)
-...+|+|+|.|..|..+++.+.+.|+. +++++
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD 59 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVD 59 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence 3457899999999999999999999998 66664
No 265
>PRK12939 short chain dehydrogenase; Provisional
Probab=84.60 E-value=3.4 Score=39.45 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=28.0
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|+++|+|+ |.+|..+++.+.+.|++++++..
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r 39 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDG 39 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeC
Confidence 478999996 78999999999999999988853
No 266
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=84.57 E-value=6.8 Score=37.72 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=73.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCc-EEEEeCCCCCCCc-----------eEEeCCHHHHHHHHHH
Q 009903 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGRG-----------MRLAKEPDEFVKLLQQ 252 (523)
Q Consensus 185 K~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P-~VvKP~~g~gs~G-----------v~~v~~~~el~~~~~~ 252 (523)
.+..+++|+++|+.+-.+ .+.++..+..+.+..++.| +|+|.-.-.||+| |++..+.+...+..++
T Consensus 24 EfQSK~~l~k~Gv~vQ~F--~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q 101 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRF--FVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ 101 (412)
T ss_pred HhhhHHHHHhcCeeEEEE--EEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence 356788999999999998 7788888888888888765 8999965555443 6677888888877777
Q ss_pred HHHHHHHhc--C-----CCcEEEeeccCCCcEEEEEEEEeC--CCcEEEE
Q 009903 253 AKSEAAAAF--G-----NDGVYLEKYVQNPRHIEFQVLADK--YGNVVHF 293 (523)
Q Consensus 253 ~~~~~~~~~--~-----~~~~lvEefI~G~~e~sv~v~~d~--~g~v~~~ 293 (523)
+.......- . -..++|-|-++-.+|--+.++.|. .|.++..
T Consensus 102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlva 151 (412)
T KOG1447|consen 102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVA 151 (412)
T ss_pred HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEe
Confidence 654321100 0 135777777776666556666654 3455444
No 267
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=84.53 E-value=2.4 Score=44.61 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=58.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC-CC---CCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI-DK---DALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~-~~---~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id 145 (523)
..|+++|.+++.....++..++++|.+++++.... .. ......+.+..+.++ ..|..++.+++++.++|
T Consensus 299 ~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-------~~d~~e~~~~i~~~~pD 371 (421)
T cd01976 299 EGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYD-------DVTHYELEEFVKRLKPD 371 (421)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEc-------CCCHHHHHHHHHHhCCC
Confidence 35889988877677788889999999999874311 10 011111223333332 34678889999999999
Q ss_pred EEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 146 ~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.++.+. .-..+++++|+|+.
T Consensus 372 liig~~-------~~~~~a~k~giP~~ 391 (421)
T cd01976 372 LIGSGI-------KEKYVFQKMGIPFR 391 (421)
T ss_pred EEEecC-------cchhhhhhcCCCeE
Confidence 999643 12256778899873
No 268
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=84.46 E-value=2.9 Score=41.74 Aligned_cols=74 Identities=14% Similarity=0.022 Sum_probs=50.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCc----cccccC--eeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL----HVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~----~~~~ad--~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
.++|||.|+ |.+|.+..-+|.+.|+.|++++.-.+.... ..++.. ..+.+ ..-|..|.+.|.++-+..+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f----~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFF----VEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEE----EEeccCCHHHHHHHHhhcC
Confidence 478999985 888999999999999999999643332211 112222 11111 0124678888888888889
Q ss_pred CCEEE
Q 009903 144 CTMLH 148 (523)
Q Consensus 144 id~Vi 148 (523)
+|.|+
T Consensus 78 fd~V~ 82 (343)
T KOG1371|consen 78 FDAVM 82 (343)
T ss_pred CceEE
Confidence 99988
No 269
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=84.43 E-value=3.1 Score=43.94 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=59.5
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcccc---------ccCeeEEcCCCCCCCCCCCHHHHHHHHH
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK---------LADESVCIGEAPSSQSYLLIPNVLSAAI 140 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~---------~ad~~~~~~~~~~~~~~~~~~~l~~~~~ 140 (523)
..|++.|.|.......+++.+.++|.+++.+...........+ ...+.+. ..|..++.++++
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~d~~el~~~i~ 368 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVF---------VGDLWDLESLAK 368 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEE---------CCCHHHHHHHhh
Confidence 4689999998888999999999999999877543332221111 1111121 347888999999
Q ss_pred HcCCCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 141 SRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 141 ~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
+.++|.|+... .....++++|+|++
T Consensus 369 ~~~pdliig~~-------~~~~~a~~~~ip~i 393 (428)
T cd01965 369 EEPVDLLIGNS-------HGRYLARDLGIPLV 393 (428)
T ss_pred ccCCCEEEECc-------hhHHHHHhcCCCEE
Confidence 99999999543 22356677888876
No 270
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.42 E-value=3 Score=40.33 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=28.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLD 40 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 578999986 678999999999999999888543
No 271
>PRK06194 hypothetical protein; Provisional
Probab=84.39 E-value=3.3 Score=40.69 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=28.0
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.+++||+|+ |.+|..+++.+.+.|++|++++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 478999996 67899999999999999998854
No 272
>PRK07774 short chain dehydrogenase; Provisional
Probab=84.35 E-value=3.8 Score=39.26 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=28.9
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|+++|+|+ |.+|..+++.+.+.|+++++++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999997 789999999999999999998643
No 273
>PRK07023 short chain dehydrogenase; Provisional
Probab=84.29 E-value=4.4 Score=38.73 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=27.4
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+++||+|+ |.+|..+++.+.+.|++++++..+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~ 34 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARS 34 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecC
Confidence 47999986 678999999999999999888543
No 274
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=84.25 E-value=4 Score=38.86 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=28.7
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|+|++||.|+ |.+|..+++.+.+.|++|+++..+
T Consensus 1 ~~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4578999985 678999999999999999988544
No 275
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.12 E-value=4.2 Score=40.36 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=28.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ |.+|..+++.+.+.|++|+++...
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999996 678999999999999999988543
No 276
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.11 E-value=3.4 Score=39.31 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=28.0
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.++++|+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999986 578999999999999999988543
No 277
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.92 E-value=2.2 Score=41.10 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=28.6
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|+++|||+|+ |.+|..+++.+.+.|++++++..
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 5678999996 67899999999999999988753
No 278
>PRK07102 short chain dehydrogenase; Provisional
Probab=83.87 E-value=3.1 Score=39.74 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
||+++|+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 468999985 778999999999999999988644
No 279
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.85 E-value=2.4 Score=41.06 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=28.0
Q ss_pred ccEEEEEcCc---HHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g---~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||+|++ .+|..+++.+.+.|++|+++..
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 5789999975 7999999999999999988753
No 280
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=83.83 E-value=5 Score=38.74 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+|+|||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 578999995 889999999999999999887543
No 281
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=83.82 E-value=3.4 Score=42.21 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=52.5
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
||++|+|+|+ |..|..+++.+.+. +++++.+.+.... ...+.+.+-.+.. .....+.+.+.. ...++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~---g~~l~~~~~~~~~-~~~~~~~~~~~~----~~~~vD~V 72 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSA---GKPLSDVHPHLRG-LVDLVLEPLDPE----ILAGADVV 72 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcccc---CcchHHhCccccc-ccCceeecCCHH----HhcCCCEE
Confidence 5689999996 88999999999887 7887776542211 1111111000000 000012222222 12459999
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCC
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGP 174 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~ 174 (523)
+.+.... ....++..+.+.|..++-+
T Consensus 73 f~alP~~-~~~~~v~~a~~aG~~VID~ 98 (343)
T PRK00436 73 FLALPHG-VSMDLAPQLLEAGVKVIDL 98 (343)
T ss_pred EECCCcH-HHHHHHHHHHhCCCEEEEC
Confidence 8765321 2345556666788888743
No 282
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=83.70 E-value=7.8 Score=37.54 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=28.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
.|++||+|+ |.+|..+++.+.+.|++|++++.+.
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 478999985 6789999999999999999886443
No 283
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.64 E-value=5 Score=43.19 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=53.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccC-e-eEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-E-SVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
..++|+|+|.|.+|...++.|+..|++|++.+.... . ...+.+ . .+... ....+.+ ..+|.|
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~--~-~~~l~~~g~~~~~~-------~~~~~~l------~~~D~V 74 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPD--A-LRPHAERGVATVST-------SDAVQQI------ADYALV 74 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHH--H-HHHHHhCCCEEEcC-------cchHhHh------hcCCEE
Confidence 357899999999999999999999999998752211 1 111111 1 11110 1111112 247989
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeC
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIG 173 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g 173 (523)
+...|....+ .....+++.|+++++
T Consensus 75 V~SpGi~~~~-p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 75 VTSPGFRPTA-PVLAAAAAAGVPIWG 99 (488)
T ss_pred EECCCCCCCC-HHHHHHHHCCCcEee
Confidence 8877654444 445666778999874
No 284
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=83.60 E-value=20 Score=30.99 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=65.9
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHH
Q 009903 86 VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCR 165 (523)
Q Consensus 86 vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g~~~e~~~~a~~~~ 165 (523)
+++.|.+.|++++++.+. ....+...++ +.+.++...+.-| ..|++.++ +-|.|++ .+..+|..+-
T Consensus 2 i~~~a~r~~i~vi~Van~-~h~~~~~~~~-~~i~Vd~g~DaaD----~~I~~~~~--~gDiVIT------qDigLA~~~l 67 (130)
T PF02639_consen 2 IIRVAKRYGIPVIFVANY-SHRLPRSPYV-EMIVVDSGFDAAD----FYIVNHAK--PGDIVIT------QDIGLASLLL 67 (130)
T ss_pred HHHHHHHHCCEEEEEeCC-CccCCCCCCe-EEEEECCCCChHH----HHHHHcCC--CCCEEEE------CCHHHHHHHH
Confidence 578999999999999633 2222222333 3344542111111 13555554 3688885 3456777777
Q ss_pred HcCCceeCCC-----HHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHh
Q 009903 166 EHGINFIGPN-----PDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219 (523)
Q Consensus 166 ~~gl~~~g~~-----~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~ 219 (523)
..|..++.|. .+.+....+...+.+-+++.|.-+- . -.-.+.+|-..|.+.
T Consensus 68 ~Kga~vl~~rG~~yt~~nI~~~L~~R~~~~~lR~~G~~~~-g--pk~~~~~d~~~F~~~ 123 (130)
T PF02639_consen 68 AKGAYVLNPRGKEYTKENIDELLAMRHLMAKLRRAGKRTK-G--PKKFTKKDRQRFANA 123 (130)
T ss_pred HCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-C--CCCCCHHHHHHHHHH
Confidence 7777666443 4556666666666666778887532 1 123456666666543
No 285
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.56 E-value=2.9 Score=42.33 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=54.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCccccc-cCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~~~~~~~~~~~~~-ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
..+|||.|+|..|..+++.|+.+|.+ |++++.+.+.......+ ++..+.. .+.. .+.+.++....++|.|+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~------~~~~-~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINS------GQDD-VQEIRELTSGAGADVAI 236 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcC------Ccch-HHHHHHHhCCCCCCEEE
Confidence 67999999999999999999999999 88775433322221222 2333311 1111 44555555545799999
Q ss_pred eCCCcccccHHHHHHHHHcCC
Q 009903 149 PGYGFLAENAVFVEMCREHGI 169 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl 169 (523)
-+.+.........+.+...|.
T Consensus 237 d~~g~~~~~~~~~~~l~~~G~ 257 (339)
T cd08239 237 ECSGNTAARRLALEAVRPWGR 257 (339)
T ss_pred ECCCCHHHHHHHHHHhhcCCE
Confidence 765432111223455555553
No 286
>PLN02775 Probable dihydrodipicolinate reductase
Probab=83.48 E-value=25 Score=34.79 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=44.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC-CCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST-IDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~-~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
..+|+|.|. |.+|..++++..+.+++.+..... .........+....+.+. ...|.+.++.-.+...+|.|+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~------~~~dl~~~l~~~~~~~~~~Vv 84 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLV------GPSEREAVLSSVKAEYPNLIV 84 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeee------cCccHHHHHHHhhccCCCEEE
Confidence 458999995 889999999998899988775321 111111112322222221 136788888766666789544
No 287
>PRK05868 hypothetical protein; Validated
Probab=83.47 E-value=1.8 Score=44.72 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=29.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|++|+|+|+|..|..++..|++.|++|.++..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 56899999999999999999999999999954
No 288
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=83.38 E-value=5.2 Score=42.65 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=58.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCC---cc-ccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA---LH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~---~~-~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
.|++.|.+++.....+++.+.++|.+|+.+........ .. ....+..+.++ ..|...+.+++++.++|.
T Consensus 326 Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~-------~~d~~e~~~~i~~~~pDl 398 (456)
T TIGR01283 326 GKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLD-------DANPRELLKLLLEYKADL 398 (456)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 57888877777888999999999999988843222111 00 11223333332 347889999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHcCCcee
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
++.+. ....++.++|+|++
T Consensus 399 ~ig~~-------~~~~~a~k~giP~i 417 (456)
T TIGR01283 399 LIAGG-------KERYTALKLGIPFC 417 (456)
T ss_pred EEEcc-------chHHHHHhcCCCEE
Confidence 98532 11245567888876
No 289
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=83.37 E-value=1.9 Score=45.25 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=31.2
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
|+++|+|+|+|..|+.++.++.+.|++|.+++..+
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 46789999999999999999999999999996433
No 290
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=83.25 E-value=2 Score=44.73 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=50.7
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
-..+++||+|+|.++.-+++.+.+.|+.-+.+- .-.......+|+++- . .+..++++.+...+ .|.|+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia--NRT~erA~~La~~~~-~-------~~~~l~el~~~l~~--~DvVi 243 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA--NRTLERAEELAKKLG-A-------EAVALEELLEALAE--ADVVI 243 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHhC-C-------eeecHHHHHHhhhh--CCEEE
Confidence 346899999999999999999999997766663 222334455555433 1 24456677776654 89999
Q ss_pred eCCCc
Q 009903 149 PGYGF 153 (523)
Q Consensus 149 ~~~g~ 153 (523)
.+++.
T Consensus 244 ssTsa 248 (414)
T COG0373 244 SSTSA 248 (414)
T ss_pred EecCC
Confidence 87653
No 291
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.22 E-value=3 Score=40.56 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=28.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999996 568999999999999999988643
No 292
>PRK08328 hypothetical protein; Provisional
Probab=83.21 E-value=10 Score=36.31 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=27.6
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
...+|+|+|.|..|..+++.+.+.|+.-+.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lv 57 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLI 57 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 45789999999999999999999999855543
No 293
>PRK07806 short chain dehydrogenase; Provisional
Probab=83.19 E-value=4.7 Score=38.55 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=27.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.+++||+|+ |.+|..+++.+.+.|++|+++..
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 378999996 77999999999999999988753
No 294
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.15 E-value=3.5 Score=39.76 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 478999986 778999999999999999988543
No 295
>PRK06475 salicylate hydroxylase; Provisional
Probab=83.15 E-value=2 Score=44.81 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=29.4
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.++|+|+|+|..|..++.+|++.|++|.++..
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 47899999999999999999999999999954
No 296
>PRK12742 oxidoreductase; Provisional
Probab=83.12 E-value=5.4 Score=37.81 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=45.4
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCC--ccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHc-CCCE
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTM 146 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~--~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~-~id~ 146 (523)
.|+|||+|+ |.+|..+++.+.+.|++++++........ ......-..+.+ +..+.+.+.++..+. ++|.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~id~ 78 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQT-------DSADRDAVIDVVRKSGALDI 78 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEec-------CCCCHHHHHHHHHHhCCCcE
Confidence 578999996 78999999999999999877632111100 000011122222 245566666666553 4898
Q ss_pred EEeCCC
Q 009903 147 LHPGYG 152 (523)
Q Consensus 147 Vi~~~g 152 (523)
++-..+
T Consensus 79 li~~ag 84 (237)
T PRK12742 79 LVVNAG 84 (237)
T ss_pred EEECCC
Confidence 885543
No 297
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=83.08 E-value=7.2 Score=41.50 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=44.4
Q ss_pred ccEEEEEcCcHHHHHHHHHHH---HcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 71 QEKILVANRGEIAVRVIRTAH---EMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~---~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
.++++|+|+|..+..+++.++ ..|++++.+..+ +.......+....+ ..+ +++.+.+++.++|.|
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd-~~~~~~~~i~g~pV----------lg~-~~l~~~i~~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDT-DPAASGRLLTGLPV----------VGA-DDALRLYARTRYAYV 192 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeC-CccccccccCCCcc----------cCh-hHHHHHHHhCCCCEE
Confidence 467999999999999999987 458888877532 21111111211111 123 667888888999977
Q ss_pred EeCC
Q 009903 148 HPGY 151 (523)
Q Consensus 148 i~~~ 151 (523)
+.+.
T Consensus 193 iIAi 196 (456)
T TIGR03022 193 IVAM 196 (456)
T ss_pred EEec
Confidence 7554
No 298
>PLN00198 anthocyanidin reductase; Provisional
Probab=83.07 E-value=5 Score=40.64 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=28.0
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+++|||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999995 778999999999999999776433
No 299
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.07 E-value=7.3 Score=41.43 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=54.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcc--ccccC--eeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~--~~~ad--~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
+|+|+|.|..|...++.|.+.|++|.+.+....+.... ..+.+ -.+..+ ...+.+.+.... .++|.|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g------~~~~~~~~~~~~--~~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLG------KPLELESFQPWL--DQPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEEC------CccchhhhhHHh--hcCCEEE
Confidence 69999999999999999999999999885433322110 01111 112222 111222222222 3478888
Q ss_pred eCCCcccccHHHHHHHHHcCCceeC
Q 009903 149 PGYGFLAENAVFVEMCREHGINFIG 173 (523)
Q Consensus 149 ~~~g~~~e~~~~a~~~~~~gl~~~g 173 (523)
...+....+ .....+++.|+++++
T Consensus 74 ~s~gi~~~~-~~~~~a~~~~i~v~~ 97 (459)
T PRK02705 74 VSPGIPWDH-PTLVELRERGIEVIG 97 (459)
T ss_pred ECCCCCCCC-HHHHHHHHcCCcEEE
Confidence 776654333 344555678999874
No 300
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.02 E-value=2.2 Score=39.08 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=30.9
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
...++|+|+|.|.+|..+++.++..|.+|+.++...
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 346899999999999999999999999999996443
No 301
>PRK07060 short chain dehydrogenase; Provisional
Probab=82.92 E-value=3.6 Score=39.17 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=46.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCC-ccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH-cCCCEE
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-RGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~-~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~-~~id~V 147 (523)
.++++|+|+ |.+|..+++.+.+.|++|++++.+..... .........+.. +..+.+.+.++.+. .++|.|
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-------D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRL-------DVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEe-------cCCCHHHHHHHHHHhCCCCEE
Confidence 468999997 68999999999999999988854321110 000111223333 24555666666554 358988
Q ss_pred EeCCC
Q 009903 148 HPGYG 152 (523)
Q Consensus 148 i~~~g 152 (523)
+-..+
T Consensus 82 i~~ag 86 (245)
T PRK07060 82 VNCAG 86 (245)
T ss_pred EECCC
Confidence 86543
No 302
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=82.84 E-value=13 Score=37.51 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=23.1
Q ss_pred EEEEEcCcHHH-----HHHHHHHHHcCCcEEEEec
Q 009903 73 KILVANRGEIA-----VRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 73 ~ILi~g~g~~~-----~~vi~aa~~~G~~vi~v~~ 102 (523)
||+|+.+|..| ..+++++.+.|++|.++..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~ 36 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGT 36 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeC
Confidence 67777665543 3689999999999999864
No 303
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=82.80 E-value=5.1 Score=39.37 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=27.1
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~ 101 (523)
...+|+|+|.|..|..++++|.+.|+. +++++
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD 61 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLID 61 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEe
Confidence 357899999999999999999999955 55554
No 304
>PRK07890 short chain dehydrogenase; Provisional
Probab=82.80 E-value=2.5 Score=40.74 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|+++|+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAART 38 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999996 678999999999999999888543
No 305
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.76 E-value=4.2 Score=39.28 Aligned_cols=33 Identities=6% Similarity=0.014 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|+.++++..+
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999996 678999999999999999988544
No 306
>PRK08251 short chain dehydrogenase; Provisional
Probab=82.72 E-value=3.6 Score=39.38 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=28.6
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|.|++||+|+ |.+|..+++.+.+.|++++++..+
T Consensus 1 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 1 TRQKILITGASSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4578999985 678999999999999999888543
No 307
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.67 E-value=11 Score=35.23 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.5
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcE-EEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPC-VAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~v-i~v~ 101 (523)
+..+|+|+|.|..|..+++.+-..|+.- ++++
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD 50 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVD 50 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 3578999999999999999999999994 4553
No 308
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=82.59 E-value=3.9 Score=39.10 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=28.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||+|+ |.+|..+++.+.+.|+.|++++.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 578999996 67899999999999999998853
No 309
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=82.51 E-value=3.5 Score=41.47 Aligned_cols=33 Identities=3% Similarity=0.188 Sum_probs=28.3
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
..|++||+|+ |.+|..+++.+.+.|++|+++..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 3578999986 67899999999999999988853
No 310
>PRK06841 short chain dehydrogenase; Provisional
Probab=82.50 E-value=4.7 Score=38.74 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.4
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999996 779999999999999999888543
No 311
>PRK06523 short chain dehydrogenase; Provisional
Probab=82.45 E-value=7.6 Score=37.45 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARS 42 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence 478999996 678999999999999999988643
No 312
>PRK07236 hypothetical protein; Provisional
Probab=82.31 E-value=2.5 Score=43.79 Aligned_cols=33 Identities=6% Similarity=-0.102 Sum_probs=30.1
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+.++|+|+|+|..|..++..|++.|++|+++..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 357899999999999999999999999999953
No 313
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.26 E-value=3.4 Score=44.42 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=31.3
Q ss_pred CCCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 68 ~~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
..++++|+|+|+|..|...++.|.+.|++|+++..
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEA 46 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEA 46 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEec
Confidence 34467999999999999999999999999999964
No 314
>PRK06753 hypothetical protein; Provisional
Probab=82.22 E-value=2.3 Score=43.79 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=29.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
++|+|+|+|..|..++..|++.|++|.++...+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 479999999999999999999999999995443
No 315
>PRK06847 hypothetical protein; Provisional
Probab=82.18 E-value=2.4 Score=43.60 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=29.5
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+++|+|+|+|..|..++..|++.|++|+++..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 57899999999999999999999999999953
No 316
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.14 E-value=3.6 Score=39.51 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=28.1
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+++||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 68999995 778999999999999999998644
No 317
>PLN02427 UDP-apiose/xylose synthase
Probab=81.82 E-value=5.1 Score=41.48 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=27.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~-G~~vi~v~~ 102 (523)
.|+|||+|+ |-+|..+++.|.+. |++|++++.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 357999996 88999999999998 599998853
No 318
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=81.71 E-value=6 Score=40.25 Aligned_cols=73 Identities=14% Similarity=-0.065 Sum_probs=44.6
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEE-EecCCCCCC--ccccc---cC-eeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVA-VYSTIDKDA--LHVKL---AD-ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~-v~~~~~~~~--~~~~~---ad-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
++|||+|+ |.+|..+++.+.+.|+++++ ++....... ....+ .+ +.+.. +..+.+.+.++++..+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~ 73 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHA-------DICDRAELDRIFAQHQ 73 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEe-------cCCCHHHHHHHHHhcC
Confidence 37999996 88999999999999987444 421111000 00011 01 11222 3567778888877778
Q ss_pred CCEEEeCC
Q 009903 144 CTMLHPGY 151 (523)
Q Consensus 144 id~Vi~~~ 151 (523)
+|.|+-.-
T Consensus 74 ~d~vih~A 81 (352)
T PRK10084 74 PDAVMHLA 81 (352)
T ss_pred CCEEEECC
Confidence 99887543
No 319
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=81.71 E-value=2.9 Score=41.34 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=31.5
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
++++|+|+|.|.+|..+++.+++.|+.+.++..+.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 468999999999999999999999999988854443
No 320
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=81.63 E-value=9.5 Score=36.46 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=44.9
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH-----cCC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----RGC 144 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i 144 (523)
.|++||+|+ |.+|..+++.+.+.|++|+++..+. .. .....-..+.. +..+.+.+.+++++ .++
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--~~-~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~~~~~i 77 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--LT-QEDYPFATFVL-------DVSDAAAVAQVCQRLLAETGPL 77 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--hh-hcCCceEEEEe-------cCCCHHHHHHHHHHHHHHcCCC
Confidence 478999986 6789999999999999999985433 00 00001112222 34555555554443 358
Q ss_pred CEEEeCCC
Q 009903 145 TMLHPGYG 152 (523)
Q Consensus 145 d~Vi~~~g 152 (523)
|.|+-..+
T Consensus 78 d~vi~~ag 85 (252)
T PRK08220 78 DVLVNAAG 85 (252)
T ss_pred CEEEECCC
Confidence 98886544
No 321
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=81.60 E-value=12 Score=42.95 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=65.0
Q ss_pred ccEEEEEcCcHHHHHH-HHHHHHcCCcEEEEecCCCCCCccccccC--eeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 71 QEKILVANRGEIAVRV-IRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~v-i~aa~~~G~~vi~v~~~~~~~~~~~~~ad--~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
+++|+|+|-|.+|... ++.|++.|++|.+.+..... ....+.. -.+..+ . +.+.+ ..+|.|
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~--~~~~L~~~gi~~~~g-------~-~~~~~------~~~d~v 67 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGK--TVEKLKAKGARFFLG-------H-QEEHV------PEDAVV 67 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCCh--HHHHHHHCCCEEeCC-------C-CHHHc------CCCCEE
Confidence 4579999999999987 99999999999987533222 1111211 112211 1 11111 247888
Q ss_pred EeCCCcccccHHHHHHHHHcCCceeCCCHHHHHH-hCC---------------HHHHHHHHHHCCCC
Q 009903 148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRI-MGD---------------KSTARETMKNAGVP 198 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~-~~d---------------K~~~r~~l~~~Gip 198 (523)
+...+....++.+ ..+.+.|+++++ ..+.+.. ... +.....+|+++|..
T Consensus 68 V~SpgI~~~~p~~-~~a~~~gi~v~~-~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~ 132 (809)
T PRK14573 68 VYSSSISKDNVEY-LSAKSRGNRLVH-RAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKKD 132 (809)
T ss_pred EECCCcCCCCHHH-HHHHHCCCcEEe-HHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCCC
Confidence 8777655445443 445678888874 4554322 222 34555666777763
No 322
>PRK06101 short chain dehydrogenase; Provisional
Probab=81.56 E-value=3.3 Score=39.56 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=28.0
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+++++|+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC
Confidence 367999985 778999999999999999988543
No 323
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.52 E-value=3.8 Score=39.87 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=29.0
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+.|++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS 42 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4579999986 679999999999999999998543
No 324
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=81.50 E-value=17 Score=35.27 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=25.3
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcC-CcEEEEe
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMG-IPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G-~~vi~v~ 101 (523)
++.||+|+|+ |.+|..+++++.+.. +++....
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~ 34 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAF 34 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEE
Confidence 3578999997 889999999999875 5655543
No 325
>PRK08163 salicylate hydroxylase; Provisional
Probab=81.50 E-value=2.6 Score=43.79 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=29.8
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
..+|+|+|+|..|..++.+|++.|++|.++...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQA 36 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeC
Confidence 468999999999999999999999999999543
No 326
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=81.49 E-value=5.6 Score=39.42 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=28.5
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 73 ~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
+|||+|+ |-+|..+++.|.+.|++|+.++....
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 3999995 88999999999999999999964333
No 327
>PRK08309 short chain dehydrogenase; Provisional
Probab=81.46 E-value=8.1 Score=35.39 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=26.1
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|+++|+|+...+..+++.+.+.|++|++++.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEEC
Confidence 4689999876777799999999999988854
No 328
>PRK06500 short chain dehydrogenase; Provisional
Probab=81.41 E-value=2.5 Score=40.38 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=28.4
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+.|++||+|+ |.+|..+++.+.+.|++++++..
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r 38 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGR 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 3578999996 77899999999999999988854
No 329
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.38 E-value=2.7 Score=40.53 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=28.4
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999996 778999999999999999887543
No 330
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.37 E-value=9.1 Score=39.31 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=28.4
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
-+..+|+|+|.|..|..+++.+...|+.-+.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lv 58 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITII 58 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 346799999999999999999999999765554
No 331
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=81.36 E-value=3.6 Score=39.71 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=27.8
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||.|+ +.+|..+++.+.+.|++|++++.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 478999986 67899999999999999998853
No 332
>PLN02214 cinnamoyl-CoA reductase
Probab=81.35 E-value=5.9 Score=40.32 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=29.5
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
++|+|||+|+ |.+|..+++.|.+.|++|+++..+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~ 43 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRN 43 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 4678999997 889999999999999999888543
No 333
>PRK05717 oxidoreductase; Validated
Probab=81.32 E-value=5 Score=38.67 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=28.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||+|+ |.+|..+++.+.+.|++|++++.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~ 42 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADL 42 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcC
Confidence 578999996 67899999999999999998853
No 334
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.18 E-value=6.9 Score=37.66 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=27.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.|+++|+|+ +.+|..+++.+.+.|++|+++.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 478999986 6789999999999999998874
No 335
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=81.17 E-value=15 Score=36.48 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=60.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEE-EEecC--CCCCC---ccccc--------cCeeEEcCCCCCCCCCCCHHHH
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCV-AVYST--IDKDA---LHVKL--------ADESVCIGEAPSSQSYLLIPNV 135 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi-~v~~~--~~~~~---~~~~~--------ad~~~~~~~~~~~~~~~~~~~l 135 (523)
..+|+|.|- +..+..+++.+.+.|+..+ .+++. .+... .+..+ .|-.+..- +......+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~v------p~~~v~~~ 81 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYV------PPPFAADA 81 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEc------CHHHHHHH
Confidence 468999995 6688999999999999733 45433 11110 00011 22222211 11223344
Q ss_pred HHHHHHcCCCE-EEeCCCccccc-HHHHHHHHHcCCceeCCCHHHHHHhCCH
Q 009903 136 LSAAISRGCTM-LHPGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDK 185 (523)
Q Consensus 136 ~~~~~~~~id~-Vi~~~g~~~e~-~~~a~~~~~~gl~~~g~~~~~~~~~~dK 185 (523)
++.|.+.++-. |+.+.||.-+. ..+.+.+++.|++++||+.-.+....++
T Consensus 82 l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~~ 133 (291)
T PRK05678 82 ILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGEC 133 (291)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccccccc
Confidence 44455566665 44444443221 2566777888888888886666555444
No 336
>PRK08223 hypothetical protein; Validated
Probab=81.16 E-value=11 Score=37.46 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=28.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
...+|+|+|.|..|..+++.+.+.|+.-+.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lv 57 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIA 57 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEE
Confidence 35789999999999999999999999876664
No 337
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=81.15 E-value=2.8 Score=45.80 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=34.1
Q ss_pred CccCCCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 65 ~~~~~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
+++.++...|+|+|+|..|..++..|.+.|++|.+++...
T Consensus 17 ~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 17 DADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4455567789999999999999999999999999996443
No 338
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.10 E-value=4 Score=41.43 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|++|+++..+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~ 40 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARD 40 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 478999997 678999999999999999988543
No 339
>PRK05875 short chain dehydrogenase; Provisional
Probab=81.02 E-value=4.3 Score=39.67 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||+|+ |.+|..+++.+.+.|++|+++..
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r 39 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGR 39 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC
Confidence 479999996 78999999999999999998854
No 340
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=80.99 E-value=42 Score=31.23 Aligned_cols=137 Identities=17% Similarity=0.167 Sum_probs=78.0
Q ss_pred EEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccc
Q 009903 76 VANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLA 155 (523)
Q Consensus 76 i~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~~g~~~ 155 (523)
...+|--+.-++..+++.|++|+.+........ +.... .....+.+..+++..++..++.......
T Consensus 5 ~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~------~~~~~--------h~~~~e~~~~~A~~lgipl~~i~~~~~~ 70 (194)
T cd01994 5 LISGGKDSCYALYRALEEGHEVVALLNLTPEEG------SSMMY--------HTVNHELLELQAEAMGIPLIRIEISGEE 70 (194)
T ss_pred EecCCHHHHHHHHHHHHcCCEEEEEEEEecCCC------Ccccc--------cccCHHHHHHHHHHcCCcEEEEeCCCCc
Confidence 334454445556677779999988864322111 11100 1235667788888889887654321111
Q ss_pred cc--HHHHHHHH---HcCCce--eCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEe
Q 009903 156 EN--AVFVEMCR---EHGINF--IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (523)
Q Consensus 156 e~--~~~a~~~~---~~gl~~--~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP 228 (523)
+. ..+.+.+. +.|+.. .|. +..-..|.+..+.+.+.|+..--. ..-.+.+++.+-+-..||.++|.-
T Consensus 71 e~~~~~l~~~l~~~~~~g~~~vv~G~----i~sd~~~~~~e~~~~~~gl~~~~P--LW~~~~~~ll~e~~~~g~~~~iv~ 144 (194)
T cd01994 71 EDEVEDLKELLRKLKEEGVDAVVFGA----ILSEYQRTRVERVCERLGLEPLAP--LWGRDQEELLREMIEAGFKAIIIK 144 (194)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEECc----cccHHHHHHHHHHHHHcCCEEEec--ccCCCHHHHHHHHHHcCCeEEEEE
Confidence 11 22222222 225653 343 223346888999999999975433 344677777776668899877766
Q ss_pred CCCC
Q 009903 229 TAGG 232 (523)
Q Consensus 229 ~~g~ 232 (523)
+...
T Consensus 145 v~~~ 148 (194)
T cd01994 145 VAAE 148 (194)
T ss_pred eccC
Confidence 6543
No 341
>PRK07478 short chain dehydrogenase; Provisional
Probab=80.92 E-value=5.3 Score=38.42 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=28.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|++|+++..+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999986 678999999999999999888543
No 342
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.83 E-value=2.3 Score=43.22 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=30.3
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|+++|.|+|.|.+|..++..+.+.|++|.+++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEec
Confidence 678899999999999999999999999999854
No 343
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=80.79 E-value=3.1 Score=37.68 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=28.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
..+|+|+|+|..|...++.|+.+|++++.++..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 378999999999999999999999999999643
No 344
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=80.78 E-value=4.7 Score=39.08 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=28.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERS 39 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999986 678999999999999999888543
No 345
>PRK06196 oxidoreductase; Provisional
Probab=80.76 E-value=4.1 Score=40.90 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=45.8
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-cccc-CeeEEcCCCCCCCCCCCHHHHHHHHHH-----c
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLA-DESVCIGEAPSSQSYLLIPNVLSAAIS-----R 142 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-~~~a-d~~~~~~~~~~~~~~~~~~~l~~~~~~-----~ 142 (523)
.|+|||+|+ |.+|..+++.+.+.|++|+++..+.+..... ..+. -..+.+ |..+.+.+.+++.+ .
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~-------Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVML-------DLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEc-------cCCCHHHHHHHHHHHHhcCC
Confidence 478999997 6789999999999999999885432211100 0111 112222 35566666555443 4
Q ss_pred CCCEEEeCCC
Q 009903 143 GCTMLHPGYG 152 (523)
Q Consensus 143 ~id~Vi~~~g 152 (523)
++|.|+-..+
T Consensus 99 ~iD~li~nAg 108 (315)
T PRK06196 99 RIDILINNAG 108 (315)
T ss_pred CCCEEEECCC
Confidence 6898886544
No 346
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.74 E-value=3.8 Score=39.18 Aligned_cols=33 Identities=6% Similarity=0.074 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+++||+|+ |.+|..+++.+.+.|+.|++++.+
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~ 38 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLN 38 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999997 889999999999999999888543
No 347
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=80.69 E-value=2.9 Score=37.62 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=26.9
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|++|.++|-|.+|..+++.+.+.|++|++.+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeecc
Confidence 57999999999999999999999999998853
No 348
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.68 E-value=4.6 Score=41.31 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=47.8
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEecCCCCCCccccc-cCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~~~~~~~~~~~~~-ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
...+|||.|+|..|..+++.|+.+|.+ |++++.+........++ +|+.+.. .+....+.+.++....++|.|
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~------~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNS------SGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcC------CCcCHHHHHHHHhCCCCCCEE
Confidence 467999999999999999999999996 77774433322222222 2333321 111223445555544579999
Q ss_pred EeCCC
Q 009903 148 HPGYG 152 (523)
Q Consensus 148 i~~~g 152 (523)
+-+.|
T Consensus 250 id~~g 254 (358)
T TIGR03451 250 IDAVG 254 (358)
T ss_pred EECCC
Confidence 97765
No 349
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=80.65 E-value=7.2 Score=36.50 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~~ 102 (523)
..++|+|+|.|..|..++..+.+.|+. +++++.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~ 53 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDF 53 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECC
Confidence 467899999999999999999999995 777743
No 350
>PRK09134 short chain dehydrogenase; Provisional
Probab=80.62 E-value=5.3 Score=38.58 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=28.0
Q ss_pred CCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 69 ~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.+.|++||+|+ |.+|..+++.+.+.|++++++.
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~ 40 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHY 40 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 34678999996 6789999999999999998764
No 351
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=80.58 E-value=6.8 Score=39.00 Aligned_cols=73 Identities=16% Similarity=-0.002 Sum_probs=45.9
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCc-ccccc---C-eeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLA---D-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 73 ~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~-~~~~a---d-~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
+|||+|+ |.+|..+++.+.+.|++|++++........ ..... . +.+. .+..+.+.+.++.+..++|.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVE-------GDLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEE-------CCCCCHHHHHHHHHhCCCcE
Confidence 5889985 789999999999999999887421111110 00110 0 1122 23566777777777678999
Q ss_pred EEeCCC
Q 009903 147 LHPGYG 152 (523)
Q Consensus 147 Vi~~~g 152 (523)
|+-..+
T Consensus 74 vv~~ag 79 (328)
T TIGR01179 74 VIHFAG 79 (328)
T ss_pred EEECcc
Confidence 885543
No 352
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=80.58 E-value=3 Score=42.04 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=27.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
.|+|+|+|..|..++..|++.|++|+++.....
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999964433
No 353
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=80.56 E-value=2.7 Score=45.66 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=27.4
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~ 106 (523)
.|+|.|+|+|.+|+..+++|.+.|++++++....+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI 36 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence 379999999999999999999999999998654443
No 354
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=80.31 E-value=5 Score=40.95 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=44.3
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccc-cc--cCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KL--ADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~-~~--ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id 145 (523)
..++|||+|+ |.+|..+++.+.+.|++|+++..+........ .+ .+....+. .+..+.+.+.++.+ ++|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~Dl~~~~~~~~~~~--~~d 81 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFR-----ADLQEEGSFDEAVK--GCD 81 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEE-----CCCCCHHHHHHHHc--CCC
Confidence 3568999996 78999999999999999998753322111000 00 01111111 23556666766664 489
Q ss_pred EEEe
Q 009903 146 MLHP 149 (523)
Q Consensus 146 ~Vi~ 149 (523)
.|+-
T Consensus 82 ~Vih 85 (353)
T PLN02896 82 GVFH 85 (353)
T ss_pred EEEE
Confidence 8774
No 355
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.29 E-value=6.6 Score=37.69 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=28.4
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|+++|+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~ 40 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRD 40 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999996 678999999999999999988644
No 356
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.20 E-value=2.5 Score=44.72 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=32.5
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
.|.++|.|+|+|..|+..++++++.|++++++....+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 4578999999999999999999999999999964433
No 357
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=80.13 E-value=9 Score=41.47 Aligned_cols=71 Identities=17% Similarity=0.057 Sum_probs=47.0
Q ss_pred ccEEEEEcCcHHHHHHHHHH-HHcCCcEEEEecCCCCCCc-----cccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009903 71 QEKILVANRGEIAVRVIRTA-HEMGIPCVAVYSTIDKDAL-----HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa-~~~G~~vi~v~~~~~~~~~-----~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 144 (523)
.|++.|+|.+..+..+.+.| +++|++++.+......... ...++++... ..|...+.+.+++.++
T Consensus 305 Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~~~~~~~i---------~~D~~ei~~~I~~~~p 375 (513)
T CHL00076 305 GKKAVVFGDATHAASMTKILAREMGIRVSCAGTYCKHDAEWFKEQVQGFCDEILI---------TDDHTEVGDMIARVEP 375 (513)
T ss_pred CCEEEEEcCchHHHHHHHHHHHhCCCEEEEecCcccchhHHHHHHHHHhccCcEE---------ecCHHHHHHHHHhcCC
Confidence 58999999998999999988 6999999866432221110 1122333332 1356677778888888
Q ss_pred CEEEeC
Q 009903 145 TMLHPG 150 (523)
Q Consensus 145 d~Vi~~ 150 (523)
|.|+.+
T Consensus 376 dliiGs 381 (513)
T CHL00076 376 SAIFGT 381 (513)
T ss_pred CEEEEC
Confidence 888853
No 358
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=80.11 E-value=7.9 Score=41.90 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=54.1
Q ss_pred CccEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCCcc-----ccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALH-----VKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~-~~G~~vi~v~~~~~~~~~~-----~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
..|++.|.|....+..+.+.+. ++|.+++...+........ ..++++... ..|..++.+.+++.+
T Consensus 294 ~Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~~~~~~~~~i---------~dD~~ei~~~i~~~~ 364 (511)
T TIGR01278 294 TGKRAFVFGDATHAVGMTKILARELGIHIVGAGTYCKYDADWVREQVAGYVDEVLI---------TDDFQEVADAIAALE 364 (511)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHHHhcCCCeEE---------eCCHHHHHHHHHhcC
Confidence 3589999999889999999997 8999998663221111100 012333332 235677888888888
Q ss_pred CCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 144 id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
+|.|+.+. .-..++.++|+|++
T Consensus 365 pdliiG~~-------~er~~a~~lgip~~ 386 (511)
T TIGR01278 365 PELVLGTQ-------MERHSAKRLDIPCG 386 (511)
T ss_pred CCEEEECh-------HHHHHHHHcCCCEE
Confidence 88888432 11234556666544
No 359
>PRK12367 short chain dehydrogenase; Provisional
Probab=80.10 E-value=7.9 Score=37.38 Aligned_cols=73 Identities=8% Similarity=0.054 Sum_probs=44.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCC-ccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~-~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
.|++||+|+ +.+|..+++.+.+.|++|+++..+..... .........+.+ +..+.+.+.+.. .++|.++
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~--~~iDilV 84 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKW-------ECGKEESLDKQL--ASLDVLI 84 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEe-------eCCCHHHHHHhc--CCCCEEE
Confidence 478999986 67899999999999999998854331110 000001122222 244555555433 3589888
Q ss_pred eCCC
Q 009903 149 PGYG 152 (523)
Q Consensus 149 ~~~g 152 (523)
-..|
T Consensus 85 nnAG 88 (245)
T PRK12367 85 LNHG 88 (245)
T ss_pred ECCc
Confidence 6544
No 360
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.01 E-value=8 Score=36.09 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=43.7
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH 148 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi 148 (523)
+.++|+|+|.|..|..+++.+...|+.-+.+. |.+.... ..+...++. . ..+. .....+.+.+.+++.+++.-+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lv-D~d~ve~-snL~rqfl~-~-~~di-G~~Ka~a~~~~L~~lNp~v~i 93 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTIL-DDRTVTE-EDLGAQFLI-P-AEDL-GQNRAEASLERLRALNPRVKV 93 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEE-ECCcccH-hhCCCCccc-c-HHHc-CchHHHHHHHHHHHHCCCCEE
Confidence 35789999999999999999999999855443 2232221 222222221 1 0000 112345566667777777544
No 361
>PLN02253 xanthoxin dehydrogenase
Probab=79.98 E-value=4.6 Score=39.59 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=27.9
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||+|+ |.+|..+++.+.+.|++|++++.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 478999986 67899999999999999999854
No 362
>PRK10637 cysG siroheme synthase; Provisional
Probab=79.90 E-value=5 Score=42.79 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=29.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.++|||+|+|..|.+=++.+.+.|.+|+++.+.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~ 44 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLTVNALA 44 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 589999999999988889999999999999543
No 363
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.89 E-value=6.3 Score=38.48 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=27.5
Q ss_pred ccEEEEEcCc---HHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g---~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||.|++ .+|..+++.+.+.|+.|++++.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEec
Confidence 4789999975 6899999999999999988753
No 364
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=79.83 E-value=5.3 Score=43.85 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
...++|+|+|+|..|...+..|++.|++|++++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3468999999999999999999999999999854
No 365
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=79.83 E-value=3 Score=43.13 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=56.7
Q ss_pred HHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEE--eCCHHHHHHHHHHHHHHHHHhcCCCcEEEee
Q 009903 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 270 (523)
Q Consensus 193 ~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~--v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe 270 (523)
++.-++.+++ ..+...+++...+.++. -+||||+.|+|+.|+.+ .-+.+|+.+..+++.+.. ..+|.|+
T Consensus 340 e~~lL~nv~T--~~c~~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p------~~~IaQ~ 410 (488)
T COG2308 340 EEPLLPNVPT--YWCGEPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKADP------ENYIAQP 410 (488)
T ss_pred cccccCCCCe--eecCCHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhCh------hhhcccc
Confidence 4567888888 67888999988888776 58999999998888775 567888888888776654 5677777
Q ss_pred ccCC
Q 009903 271 YVQN 274 (523)
Q Consensus 271 fI~G 274 (523)
-+.=
T Consensus 411 ~~~l 414 (488)
T COG2308 411 VLQL 414 (488)
T ss_pred cccc
Confidence 5543
No 366
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=79.75 E-value=5.6 Score=42.60 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=59.5
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCc---ccc-ccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~---~~~-~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id 145 (523)
..|++.|.+.+.....+++.+.++|.+++.+......... ... +.+..+.++ ..+..++.+.+++.++|
T Consensus 323 ~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~-------d~~~~e~~~~i~~~~pD 395 (475)
T PRK14478 323 EGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMID-------DANPRELYKMLKEAKAD 395 (475)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEe-------CCCHHHHHHHHhhcCCC
Confidence 3578888887778889999999999999888644322210 011 122333332 34577888888889999
Q ss_pred EEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 146 MLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 146 ~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.++... .-..+..++|+|++
T Consensus 396 liig~s-------~~~~~a~k~giP~~ 415 (475)
T PRK14478 396 IMLSGG-------RSQFIALKAGMPWL 415 (475)
T ss_pred EEEecC-------chhhhhhhcCCCEE
Confidence 999642 11256677899876
No 367
>PRK08226 short chain dehydrogenase; Provisional
Probab=79.60 E-value=5.9 Score=38.32 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=27.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.++++|+|+ +.+|..+++.+.+.|++|++++.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r 38 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLILLDI 38 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecC
Confidence 478999985 67899999999999999988854
No 368
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=79.55 E-value=2.1 Score=45.70 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=58.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCC----CCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK----DALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT 145 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~----~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id 145 (523)
..|++.|.+++.-...++..++++|.++++....... ......+.+..+.++ ..|..++.+++++.++|
T Consensus 334 ~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-------~~d~~el~~~i~~~~pD 406 (466)
T TIGR01282 334 EGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYD-------DVTHYEFEEFVEKLKPD 406 (466)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEee-------CCCHHHHHHHHHHhCCC
Confidence 3588999888777888889999999999877431111 111112233444343 35778888999999999
Q ss_pred EEEeCCCcccccHHHHHHHHHcCCce
Q 009903 146 MLHPGYGFLAENAVFVEMCREHGINF 171 (523)
Q Consensus 146 ~Vi~~~g~~~e~~~~a~~~~~~gl~~ 171 (523)
.++.+.- + ..+++++|+|+
T Consensus 407 l~ig~~~---~----~~~a~k~gIP~ 425 (466)
T TIGR01282 407 LVGSGIK---E----KYVFQKMGVPF 425 (466)
T ss_pred EEEecCC---c----cceeeecCCCc
Confidence 9996531 1 14566778875
No 369
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=79.53 E-value=3.9 Score=30.89 Aligned_cols=30 Identities=7% Similarity=-0.008 Sum_probs=25.6
Q ss_pred EEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 76 VANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 76 i~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
|+|+|..|...+..+++.|++|.++.....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999965443
No 370
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=79.52 E-value=2.9 Score=43.72 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=29.3
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
++|+|||+|-.|..++..|.+.|++|++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 68999999999999999999999999999643
No 371
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.50 E-value=13 Score=39.31 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=56.0
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccC---e-eEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD---E-SVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad---~-~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
.++|+|+|.|.+|..+++.+.+.|++|++.+....... ..++-. . .+..+ ... +.+. .++|.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~-~~~l~~~~~gi~~~~g-------~~~-~~~~-----~~~d~ 70 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPER-VAQIGKMFDGLVFYTG-------RLK-DALD-----NGFDI 70 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchh-HHHHhhccCCcEEEeC-------CCC-HHHH-----hCCCE
Confidence 46899999999999999999999999988854332211 111110 1 11111 111 1111 35899
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeCCCHHHH
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSI 179 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~ 179 (523)
|+...+....++ ....+.+.|+++++ ..+.+
T Consensus 71 vv~spgi~~~~p-~~~~a~~~~i~v~~-~~~~~ 101 (445)
T PRK04308 71 LALSPGISERQP-DIEAFKQNGGRVLG-DIELL 101 (445)
T ss_pred EEECCCCCCCCH-HHHHHHHcCCcEEE-hHHHH
Confidence 998776544444 44555678899873 44443
No 372
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=79.47 E-value=4.5 Score=43.02 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=31.5
Q ss_pred cCCCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 67 ~~~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.+.|...|+|+|+|+.|...+..|.+.|++|.+++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 345567899999999999999999999999999953
No 373
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=79.32 E-value=2.8 Score=42.34 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEeCCCCCCCceEEeCCHH-HHHHHHHHHHHHHHHhcCCCcEEEe
Q 009903 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLE 269 (523)
Q Consensus 193 ~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP~~g~gs~Gv~~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvE 269 (523)
++.-++.+++ ..+.+.++.....+++. -+||||+.|.||+|+++-.... |..+.++++.... ..|+.|
T Consensus 262 eellL~~VpT--~~cg~~~~~~~Vl~~l~-~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~~P------~~yVAQ 330 (330)
T PF04174_consen 262 EELLLPNVPT--WWCGDPEDREYVLANLD-ELVVKPADGYGGKGVYIGPKLSAERRALRAEILARP------HRYVAQ 330 (330)
T ss_dssp S--SSEE-----EETTSHHHHHHHHHSGG-GEEEEE--------EEEGGG--HHHHHHHHHHHHSG------GGEEEE
T ss_pred CCcccCCCCc--EeCCCHHHHHHHHhchh-hcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHhCc------cCCccC
Confidence 3455666777 56889999988888776 6999999999999999843322 7777777766532 466655
No 374
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.30 E-value=2.7 Score=38.18 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=28.4
Q ss_pred CCccEEEEEcCcHH-HHHHHHHHHHcCCcEEEEe
Q 009903 69 CRQEKILVANRGEI-AVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 69 ~~~k~ILi~g~g~~-~~~vi~aa~~~G~~vi~v~ 101 (523)
-..++|||+|+|.+ |..+++.+.+.|.++++++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~ 75 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCH 75 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEE
Confidence 34689999999985 8889999999999888775
No 375
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=79.29 E-value=8.8 Score=40.54 Aligned_cols=87 Identities=14% Similarity=0.061 Sum_probs=55.6
Q ss_pred CccEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCCccc-----cccCeeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHV-----KLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~-~~G~~vi~v~~~~~~~~~~~-----~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
+.|+++|.|.......+.+.+. ++|.+++.+.+......... .+.+.... ..|..++.+++++.+
T Consensus 300 ~gkrv~i~g~~~~~~~l~~~L~~elG~~vv~~~~~~~~~~~~~~~~~~~~~~~~~i---------~~D~~e~~~~i~~~~ 370 (430)
T cd01981 300 TGKRAFVFGDATHVAAATRILAREMGFRVVGAGTYCKEDAKWFREQATGYCDEALI---------TDDHTEVGDMIARTE 370 (430)
T ss_pred cCCeEEEEcChHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHhcCCceEE---------ecCHHHHHHHHHhhC
Confidence 4688999998888899999886 89999988754322211111 12233332 235677888888889
Q ss_pred CCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 144 id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
+|.++... .-..+++++|+|++
T Consensus 371 pdliig~~-------~~~~~a~~~gip~~ 392 (430)
T cd01981 371 PELIFGTQ-------MERHIGKRLDIPCA 392 (430)
T ss_pred CCEEEecc-------hhhHHHHHcCCCEE
Confidence 99888532 11234566777654
No 376
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=79.22 E-value=3.1 Score=44.41 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=31.0
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
.++|+|||+|..|+..++.|++.|++++++....+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 57899999999999999999999999999964443
No 377
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=79.20 E-value=9.9 Score=34.93 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=26.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
+++|+|+|..|..+++.+++.|++++.+.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfi 29 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFL 29 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEE
Confidence 48999999999999999999999999775
No 378
>PRK09186 flagellin modification protein A; Provisional
Probab=79.18 E-value=6.8 Score=37.60 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.9
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||+|+ |.+|..+++.+.+.|++++++..
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence 478999996 67899999999999999988854
No 379
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=79.16 E-value=34 Score=36.43 Aligned_cols=87 Identities=13% Similarity=0.000 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcC---CCCC---CCCCCCHHHHHHHHHHcCCCEEEeCCCcccc
Q 009903 83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG---EAPS---SQSYLLIPNVLSAAISRGCTMLHPGYGFLAE 156 (523)
Q Consensus 83 ~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~---~~~~---~~~~~~~~~l~~~~~~~~id~Vi~~~g~~~e 156 (523)
-..+++.+.+.|++|.++..+.......... ..+.+. .+.. .-.+.....+..++++.++|.|+.......
T Consensus 80 ~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~- 156 (465)
T PLN02871 80 FQNFIRYLREMGDEVLVVTTDEGVPQEFHGA--KVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIM- 156 (465)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCccccCc--eeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchh-
Confidence 4678899999999999997554321110000 000000 0000 001112236778888899999986532110
Q ss_pred cHHHHHHHHHcCCcee
Q 009903 157 NAVFVEMCREHGINFI 172 (523)
Q Consensus 157 ~~~~a~~~~~~gl~~~ 172 (523)
......++...|+|++
T Consensus 157 ~~~~~~~ak~~~ip~V 172 (465)
T PLN02871 157 VFGALFYAKLLCVPLV 172 (465)
T ss_pred HHHHHHHHHHhCCCEE
Confidence 1112233456677765
No 380
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.13 E-value=3.2 Score=38.16 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=26.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+|.|+|+|.+|..++..+...|++|++++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 6899999999999999999999999999543
No 381
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.09 E-value=4.5 Score=40.34 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=28.3
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
..|+|||+|+ |.+|..+++.+.+.|++++++..
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 3578999996 67899999999999999988854
No 382
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=79.07 E-value=4.2 Score=40.04 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.8
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCc-EEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~ 101 (523)
...+|||.|+|..|..+++.|+.+|.+ +++++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~ 152 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAAD 152 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 457899999999999999999999998 66663
No 383
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=79.06 E-value=42 Score=33.27 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=82.5
Q ss_pred ccEEEEEcCcH----HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~g~----~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
.-+|+|+|++. -.+-...++.+.|...+.+-+..+.......+..+.+... +.+.....+.....+.|+
T Consensus 32 ~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~~s~~Pe~mv~~-------~~~~~~~~~~~~~~~~~a 104 (284)
T COG0063 32 YGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLPELMVIE-------VEGKKLLEERELVERADA 104 (284)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhHhhcCcceeEee-------cccchhhHHhhhhccCCE
Confidence 45899998762 2455667888889887777555443334455556666543 333333333344467999
Q ss_pred EEeCCCccccc--HHHHHHHHHcC-CceeCCCHHHHHHh---------------CCHHHHHHHHHHCCCCCCCCCCccCC
Q 009903 147 LHPGYGFLAEN--AVFVEMCREHG-INFIGPNPDSIRIM---------------GDKSTARETMKNAGVPTVPGSDGLLQ 208 (523)
Q Consensus 147 Vi~~~g~~~e~--~~~a~~~~~~g-l~~~g~~~~~~~~~---------------~dK~~~r~~l~~~Gip~p~~~~~~~~ 208 (523)
|+.+.|.-.+. ......+.... .|++ -+.+.+..+ -++..+++++.. .+++ ...+
T Consensus 105 vviGpGlG~~~~~~~~~~~~l~~~~~p~V-iDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g~---~~~~---~~~~ 177 (284)
T COG0063 105 VVIGPGLGRDAEGQEALKELLSSDLKPLV-LDADALNLLAELPDLLDERKVVLTPHPGEFARLLGT---EVDE---IEVD 177 (284)
T ss_pred EEECCCCCCCHHHHHHHHHHHhccCCCEE-EeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcCC---cccc---cccc
Confidence 99886654333 23333333333 4544 355655532 234444444432 3332 2334
Q ss_pred CHHHHHHHHHhcCCcEEEEeC
Q 009903 209 STEEAVKLADELGFPVMIKAT 229 (523)
Q Consensus 209 s~~e~~~~~~~~g~P~VvKP~ 229 (523)
..+.+++++++++-=+|+|=.
T Consensus 178 r~~~a~~~a~~~~~vvVLKG~ 198 (284)
T COG0063 178 RLEAARELAAKYGAVVVLKGA 198 (284)
T ss_pred hHHHHHHHHHHcCCEEEEeCC
Confidence 567788888999888899843
No 384
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.04 E-value=5.7 Score=38.17 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|+|+|+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 589999996 789999999999999999988543
No 385
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=79.03 E-value=3.2 Score=43.21 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=29.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|..+|+|+|+|..|..++..|++.|++|.++..
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEEC
Confidence 457899999999999999999999999999953
No 386
>PRK07035 short chain dehydrogenase; Provisional
Probab=79.02 E-value=5.1 Score=38.45 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=28.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999985 678999999999999999988643
No 387
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.01 E-value=13 Score=40.07 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=58.0
Q ss_pred cCCCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 67 ~~~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
++...+++||+|+|..|..+++++++.+-...+..-|.++......+-.-.+ +...+ +.+++++.+++-
T Consensus 112 ~~~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V----------~g~~~-i~~~v~~~~~~~ 180 (588)
T COG1086 112 QKDNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPV----------LGRIE-IERVVEELGIQL 180 (588)
T ss_pred cccCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceee----------echhH-HHHHHHHcCCce
Confidence 3445688999999999999999999885433333224444443444433222 22344 888888899986
Q ss_pred EEeCCCcccc--cHHHHHHHHHcCCce
Q 009903 147 LHPGYGFLAE--NAVFVEMCREHGINF 171 (523)
Q Consensus 147 Vi~~~g~~~e--~~~~a~~~~~~gl~~ 171 (523)
++....+.+. ...+.+.+.+.|+.+
T Consensus 181 iiiAips~~~~~~~~i~~~l~~~~~~v 207 (588)
T COG1086 181 ILIAIPSASQEERRRILLRLARTGIAV 207 (588)
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCcE
Confidence 6654322221 235566677777643
No 388
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=79.01 E-value=9.9 Score=37.11 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=54.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHc---CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEM---GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~---G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
|.+||.|+|.|.+|..+++++.+. +++++.+. +..+ .....+++..- -..++++++ ..++|.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~-~~~~-~~~~~~~~~~~---------~~~~l~~ll----~~~~Dl 65 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALT-RNAA-DLPPALAGRVA---------LLDGLPGLL----AWRPDL 65 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEe-cCCH-HHHHHhhccCc---------ccCCHHHHh----hcCCCE
Confidence 568999999999999999988654 36666663 2222 12223333311 134555553 256999
Q ss_pred EEeCCCcccccHHHHHHHHHcCCceeCCCHHHHH
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~ 180 (523)
|+-+-+.. ....+...+.+.|..++-.|.-++.
T Consensus 66 VVE~A~~~-av~e~~~~iL~~g~dlvv~SvGALa 98 (267)
T PRK13301 66 VVEAAGQQ-AIAEHAEGCLTAGLDMIICSAGALA 98 (267)
T ss_pred EEECCCHH-HHHHHHHHHHhcCCCEEEEChhHhc
Confidence 98543210 1124444555667766655544443
No 389
>PLN02206 UDP-glucuronate decarboxylase
Probab=79.00 E-value=4.4 Score=43.00 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=28.8
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
..|||||+|+ |-+|..+++.|.+.|++|++++
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 4578999996 8899999999999999999885
No 390
>PRK08263 short chain dehydrogenase; Provisional
Probab=78.99 E-value=6.3 Score=38.54 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=45.8
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCcc-ccccCeeEEcCCCCCCCCCCCHHHHHHHHHH-----c
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAIS-----R 142 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~-----~ 142 (523)
|.|+|||.|+ |.+|..+++.+.+.|++|+++..+.+..... .........+. .+..+.+.+.+.+.. .
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLA-----LDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEE-----ccCCCHHHHHHHHHHHHHHcC
Confidence 3568999985 6789999999999999998885432211000 01111111111 134555565554443 3
Q ss_pred CCCEEEeCCC
Q 009903 143 GCTMLHPGYG 152 (523)
Q Consensus 143 ~id~Vi~~~g 152 (523)
++|+|+-..+
T Consensus 77 ~~d~vi~~ag 86 (275)
T PRK08263 77 RLDIVVNNAG 86 (275)
T ss_pred CCCEEEECCC
Confidence 6898886544
No 391
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=78.85 E-value=12 Score=40.67 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=55.0
Q ss_pred CccEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCCc-----cccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDAL-----HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~-~~G~~vi~v~~~~~~~~~-----~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
..|++.|.|....+..+.+.+. ++|.+++.+......... ...+.++... ..|..++.+.+++.+
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i---------~~D~~el~~~i~~~~ 362 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAAKEYGDEALI---------TDDYLEVEDAIAEAA 362 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEE---------ecCHHHHHHHHHhcC
Confidence 4578999998888999999998 799999877432221110 1112233332 235677888888888
Q ss_pred CCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 144 id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
+|.|+.+. .-..+++++|+|++
T Consensus 363 PdliiG~~-------~er~~a~~lgiP~~ 384 (519)
T PRK02910 363 PELVLGTQ-------MERHSAKRLGIPCA 384 (519)
T ss_pred CCEEEEcc-------hHHHHHHHcCCCEE
Confidence 88888432 11235556676654
No 392
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=78.81 E-value=18 Score=36.99 Aligned_cols=75 Identities=27% Similarity=0.298 Sum_probs=45.7
Q ss_pred CCCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccc-cCeeEEcCCCCCCCCCCCHHHHHHHHHH---c
Q 009903 68 TCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAIS---R 142 (523)
Q Consensus 68 ~~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 142 (523)
....+.|||+|+ |..|..+++-|+..|+..++..+..+.......+ +|+.+. |.+ +++.+..++ .
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvd---------y~~-~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVD---------YKD-ENVVELIKKYTGK 224 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeec---------CCC-HHHHHHHHhhcCC
Confidence 344678888876 5789999999999994434333343433333333 455553 555 344444443 4
Q ss_pred CCCEEEeCCC
Q 009903 143 GCTMLHPGYG 152 (523)
Q Consensus 143 ~id~Vi~~~g 152 (523)
++|.|+=+-+
T Consensus 225 ~~DvVlD~vg 234 (347)
T KOG1198|consen 225 GVDVVLDCVG 234 (347)
T ss_pred CccEEEECCC
Confidence 7999997644
No 393
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=78.79 E-value=20 Score=37.30 Aligned_cols=32 Identities=13% Similarity=0.321 Sum_probs=27.7
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
+..+|||+|.|..|..+++.+...|+.-+.+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lv 72 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIV 72 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 46799999999999999999999999755543
No 394
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=78.75 E-value=5.9 Score=38.01 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=27.3
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|+|+|+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 47899986 778999999999999999988543
No 395
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.70 E-value=16 Score=35.20 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=28.2
Q ss_pred CccEEEEEcCc---HHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g---~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+.|++||+|++ .+|..+++.+.+.|++++++..
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r 39 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYW 39 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcC
Confidence 35789999985 5899999999999999988853
No 396
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.68 E-value=3 Score=41.73 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.2
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
..++++|+|.|..|..++..|+++|.+|++++.+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3589999999999999999999999998888543
No 397
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.65 E-value=4.7 Score=38.91 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=28.4
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARK 45 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999985 778999999999999999888543
No 398
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.64 E-value=7.3 Score=37.75 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=28.1
Q ss_pred ccEEEEEcCc---HHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g---~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|++ .+|..+++.+.+.|++|++++.+
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999975 69999999999999999887543
No 399
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=78.56 E-value=35 Score=32.55 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=81.8
Q ss_pred cEEEEE-cCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEE-e
Q 009903 72 EKILVA-NRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH-P 149 (523)
Q Consensus 72 k~ILi~-g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi-~ 149 (523)
|.++.. |+-.+.+.+.++.++ ++|+.+-....... +.... .....+.+...++..++..+. +
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~--~~v~~L~t~~~~~~------~s~~~--------H~~~~~~~~~qA~algipl~~~~ 65 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE--HEVISLVNIMPENE------ESYMF--------HGVNAHLTDLQAESIGIPLIKLY 65 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh--CeeEEEEEEecCCC------Ccccc--------cccCHHHHHHHHHHcCCCeEEee
Confidence 334333 444466666666666 88766632211111 11111 123456677778888887654 2
Q ss_pred CCC-cccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcCCcEEEEe
Q 009903 150 GYG-FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA 228 (523)
Q Consensus 150 ~~g-~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g~P~VvKP 228 (523)
..+ ...+...+.+.+.+.|+..+ -.-++.....|.+..+.++++|+..--. ..-.+.+++.+-+-..||-++|.-
T Consensus 66 ~~~~~e~~~e~l~~~l~~~gv~~v--v~GdI~s~~qr~~~e~v~~~lgl~~~~P--LW~~~~~~ll~e~i~~G~~aiIv~ 141 (223)
T TIGR00290 66 TEGTEEDEVEELKGILHTLDVEAV--VFGAIYSEYQKTRIERVCRELGLKSFAP--LWHRDPEKLMEEFVEEKFEARIIA 141 (223)
T ss_pred cCCCccHHHHHHHHHHHHcCCCEE--EECCcccHHHHHHHHHHHHhcCCEEecc--ccCCCHHHHHHHHHHcCCeEEEEE
Confidence 221 11122456667777787533 1224555557889999999999985543 445677777766667899888777
Q ss_pred CCCC
Q 009903 229 TAGG 232 (523)
Q Consensus 229 ~~g~ 232 (523)
+...
T Consensus 142 v~a~ 145 (223)
T TIGR00290 142 VAAE 145 (223)
T ss_pred EecC
Confidence 6544
No 400
>PRK06914 short chain dehydrogenase; Provisional
Probab=78.56 E-value=5.7 Score=38.85 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=28.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+++||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 467899986 678999999999999999988543
No 401
>PRK05884 short chain dehydrogenase; Provisional
Probab=78.55 E-value=5 Score=38.02 Aligned_cols=71 Identities=10% Similarity=-0.008 Sum_probs=42.9
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCc-cccccCeeEEcCCCCCCCCCCCHHHHHHHHHHc--CCCEEE
Q 009903 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTMLH 148 (523)
Q Consensus 73 ~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~-~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~--~id~Vi 148 (523)
+++|+|+ +.+|..+++.+.+.|++++++..+.+.... ...+....+.. |..+.+.+.++.++. ++|.++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~-------D~~~~~~v~~~~~~~~~~id~lv 74 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVC-------DNTDPASLEEARGLFPHHLDTIV 74 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEec-------CCCCHHHHHHHHHHHhhcCcEEE
Confidence 6889986 779999999999999999988543221110 01111122322 345556665555432 588877
Q ss_pred eC
Q 009903 149 PG 150 (523)
Q Consensus 149 ~~ 150 (523)
-.
T Consensus 75 ~~ 76 (223)
T PRK05884 75 NV 76 (223)
T ss_pred EC
Confidence 43
No 402
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=78.54 E-value=22 Score=34.72 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=50.2
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
.+|+|+|. |.+|..+++.+.+. +++++.+. +.+...... . +. + ....+.+.+.+++ .+|+|+-
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~-d~~~~~~~~-~-~~-~------~i~~~~dl~~ll~-----~~DvVid 66 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAV-DRPGSPLVG-Q-GA-L------GVAITDDLEAVLA-----DADVLID 66 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE-ecCCccccc-c-CC-C------CccccCCHHHhcc-----CCCEEEE
Confidence 58999998 99999999998875 78887764 222211111 1 11 1 0112445555542 5898884
Q ss_pred CCCcccccHHHHHHHHHcCCcee
Q 009903 150 GYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
..-. ......+..+.+.|++++
T Consensus 67 ~t~p-~~~~~~~~~al~~G~~vv 88 (257)
T PRK00048 67 FTTP-EATLENLEFALEHGKPLV 88 (257)
T ss_pred CCCH-HHHHHHHHHHHHcCCCEE
Confidence 3211 112456677788888766
No 403
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.47 E-value=5.4 Score=38.21 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.8
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.|++||+|+ |.+|..+++.+.+.|++++++.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~ 36 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNY 36 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEc
Confidence 378999985 6789999999999999998764
No 404
>PRK06128 oxidoreductase; Provisional
Probab=78.21 E-value=6.9 Score=38.90 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=27.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.|++||+|+ +.+|..+++.+.+.|++|++..
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~ 86 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALNY 86 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 478999996 6789999999999999998764
No 405
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=78.17 E-value=6.8 Score=39.30 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=27.6
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.++|||+|+ |.+|..+++.+.+.|++|+++..
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 468999995 78999999999999999987643
No 406
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=78.15 E-value=3.4 Score=42.93 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=29.8
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|..+|+|+|+|..|..++..|++.|++|.++..
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~ 33 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 456899999999999999999999999999953
No 407
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.08 E-value=3.4 Score=41.09 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=29.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.++++|+|.|..|..+++.++.+|.+|++++.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 579999999999999999999999998888543
No 408
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.02 E-value=5.5 Score=39.84 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=27.9
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|+|||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 68999996 789999999999999999887543
No 409
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.02 E-value=11 Score=40.50 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=28.9
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.++|+|+|.|.+|..+++.|+++|++|.+.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADT 38 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcC
Confidence 46899999999999999999999999988854
No 410
>PRK12827 short chain dehydrogenase; Provisional
Probab=78.00 E-value=14 Score=35.02 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=27.6
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
+.|++||+|+ |.+|..+++.+.+.|++++++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 3478999985 7789999999999999998874
No 411
>PRK07831 short chain dehydrogenase; Provisional
Probab=77.95 E-value=6 Score=38.32 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=27.7
Q ss_pred ccEEEEEcC-c-HHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-G-EIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g-~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||+|+ | .+|..+++.+.+.|++|++++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~ 50 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDI 50 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeC
Confidence 478999997 4 6999999999999999888753
No 412
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=77.94 E-value=8.9 Score=39.73 Aligned_cols=139 Identities=15% Similarity=0.058 Sum_probs=84.8
Q ss_pred cEEEEEcC--cH--HHHHHHHHHHHc--CCcEEEEecCCCCCCcccc-ccC--eeEEcCCCCCCCCCCCHHHHHHHHHHc
Q 009903 72 EKILVANR--GE--IAVRVIRTAHEM--GIPCVAVYSTIDKDALHVK-LAD--ESVCIGEAPSSQSYLLIPNVLSAAISR 142 (523)
Q Consensus 72 k~ILi~g~--g~--~~~~vi~aa~~~--G~~vi~v~~~~~~~~~~~~-~ad--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (523)
.-|-|-++ |+ .+..+++++++. ++.+++.+.++........ +.| .+.+++ ++..-.+.++.+..
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP-------~D~~~~v~rFl~~~ 122 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLP-------LDLPIAVRRFLRKW 122 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecC-------cCchHHHHHHHHhc
Confidence 44555554 33 478899999999 8887776544433222222 222 455554 77788888999999
Q ss_pred CCCEEEeCCCccccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHHHHHHhcC
Q 009903 143 GCTMLHPGYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG 221 (523)
Q Consensus 143 ~id~Vi~~~g~~~e~-~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~~~~~~~g 221 (523)
++|.++.. ++|. +.+...+.+.|+|++--+.........++.....+.+.=+..-.. ...+|..|.++|. ++|
T Consensus 123 ~P~l~Ii~---EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~l--i~aQse~D~~Rf~-~LG 196 (419)
T COG1519 123 RPKLLIIM---ETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDL--ILAQSEEDAQRFR-SLG 196 (419)
T ss_pred CCCEEEEE---eccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcce--eeecCHHHHHHHH-hcC
Confidence 99987753 2243 556667778899876555544444444444333333321222244 6788999998876 577
Q ss_pred Cc
Q 009903 222 FP 223 (523)
Q Consensus 222 ~P 223 (523)
.+
T Consensus 197 a~ 198 (419)
T COG1519 197 AK 198 (419)
T ss_pred Cc
Confidence 53
No 413
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.91 E-value=6 Score=38.08 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=28.0
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||+|+ +.+|..+++.+.+.|++|++++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 478999997 67899999999999999988854
No 414
>PRK08278 short chain dehydrogenase; Provisional
Probab=77.90 E-value=15 Score=35.94 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKT 39 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 478999996 678999999999999999988644
No 415
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=77.88 E-value=5 Score=42.62 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=34.0
Q ss_pred CCCccCCCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 63 GALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 63 ~~~~~~~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
+.+......++++|+|+|.+|..++..++++|.+|.++.
T Consensus 165 ~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie 203 (454)
T COG1249 165 DALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVE 203 (454)
T ss_pred hhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEe
Confidence 334455677899999999999999999999999999995
No 416
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=77.85 E-value=15 Score=38.94 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=56.5
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcccc---ccC------eeEEcCCCCCCCCCCCHHHHHHHHHH
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK---LAD------ESVCIGEAPSSQSYLLIPNVLSAAIS 141 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~---~ad------~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (523)
.|++.|.|.......+.+.+.++|.+++.+...........+ +.+ ....+ ...|..++.+.+++
T Consensus 303 gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~-------~~~d~~e~~~~i~~ 375 (435)
T cd01974 303 GKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVY-------PGKDLWHLRSLLFT 375 (435)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEE-------ECCCHHHHHHHHhh
Confidence 589999998888999999999999999776543221110000 011 11111 13577788888888
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 142 ~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.++|.++... .-..+++++|+|++
T Consensus 376 ~~pDliiG~s-------~~~~~a~~~gip~v 399 (435)
T cd01974 376 EPVDLLIGNT-------YGKYIARDTDIPLV 399 (435)
T ss_pred cCCCEEEECc-------cHHHHHHHhCCCEE
Confidence 8899888532 11356677888765
No 417
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.84 E-value=5.2 Score=39.77 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+++||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 378999996 778999999999999999998643
No 418
>PRK06185 hypothetical protein; Provisional
Probab=77.83 E-value=3.5 Score=42.93 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=30.7
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+...|+|+|+|..|..++..+.+.|++|++++..
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 45568999999999999999999999999999543
No 419
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=77.83 E-value=3.5 Score=42.49 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=31.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
+.+|+|+|+|-.|..-+-++++.|++++++....+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 57899999999999999999999999999965333
No 420
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.79 E-value=6.7 Score=37.92 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=27.7
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARN 34 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999996 778999999999999999988643
No 421
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=77.78 E-value=6.5 Score=41.28 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=30.3
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
..++|+|+|.|..|..+++.|+.+|.+|++++.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~d 244 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVD 244 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4689999999999999999999999998888543
No 422
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=77.70 E-value=3.7 Score=41.29 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=87.8
Q ss_pred ccEEEEEcCcHHHHHHHHHHHH-cCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH--------
Q 009903 71 QEKILVANRGEIAVRVIRTAHE-MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-------- 141 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~-~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 141 (523)
.-||.++|+|..|..++.-... -|++++.+. +..... .++..|... .+ ....-+..+...+.+..+.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvais-d~~~~~-ak~A~~~ag-~~-~~~~~e~~~~s~~a~Ai~aGKi~vT~D 92 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAIS-DRNLDA-AKRAYDRAG-GP-KIEAVEADDASKMADAIEAGKIAVTDD 92 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEe-cccchH-HHHHHHHhc-CC-cccccccchhhHHHHHHhcCcEEEecc
Confidence 3589999999999887755544 599999985 222221 122222211 10 0001112223333333332
Q ss_pred -------cCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCCccCCCHHHHH
Q 009903 142 -------RGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV 214 (523)
Q Consensus 142 -------~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~~~~~s~~e~~ 214 (523)
-.+|.|+-.+|...--+.++-.+..++-.++..+.|+--.. =-.+++...++|+--.-..--...+.-++.
T Consensus 93 ~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtI--Gp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~ 170 (438)
T COG4091 93 AELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTI--GPILKQQADAAGVIYSGGAGDEPSSCMELY 170 (438)
T ss_pred hhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceee--cHHHHHHHhhcCeEEeccCCCCcHHHHHHH
Confidence 22555554443211111111111222222222222221111 126788888888764332112233456889
Q ss_pred HHHHhcCCcEEEEeCCCCCCCceEE-eCCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 009903 215 KLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274 (523)
Q Consensus 215 ~~~~~~g~P~VvKP~~g~gs~Gv~~-v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 274 (523)
+|+..+||++|.- |-|-..-.. -.+++..++..++ .+...-++-+|.+|
T Consensus 171 efa~a~G~evv~a---GKGkNnpl~~~a~Pdt~~eeA~r--------~~~n~~Ml~sF~DG 220 (438)
T COG4091 171 EFASALGFEVVSA---GKGKNNPLNIDANPDTYEEEAKR--------RNMNPRMLVSFQDG 220 (438)
T ss_pred HHHHhcCCeEEec---cCCcCCCCccCCCCchHHHHHhh--------cCCChHHhhhhhcc
Confidence 9999999998853 211111111 2345553332221 12245567789999
No 423
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.65 E-value=5.6 Score=44.38 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=30.6
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
..++|+|+|+|..|...+..|++.|++|+++...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~ 342 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRH 342 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4789999999999999999999999999988543
No 424
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=77.58 E-value=9.8 Score=40.06 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=26.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCC------cEEEEe
Q 009903 73 KILVANRGEIAVRVIRTAHEMGI------PCVAVY 101 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~------~vi~v~ 101 (523)
+|+|+|+|..|+.+++.+..+|+ ++.+++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD 35 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTD 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEEC
Confidence 58999999999999999999999 667764
No 425
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=77.57 E-value=9.2 Score=41.33 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=57.0
Q ss_pred CccEEEEEcCcHHHHHHHHHHH-HcCCcEEEEecCCCCCC----ccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDA----LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~-~~G~~vi~v~~~~~~~~----~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 144 (523)
..||++|.+++.....++..+. ++|.+++++.+...... ....+.+..+.++ +..+.+. .+.+++.++
T Consensus 327 ~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~------D~~~~e~-~~~l~~~~~ 399 (513)
T TIGR01861 327 KGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAID------DPNELEG-LEAMEMLKP 399 (513)
T ss_pred CCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEec------CCCHHHH-HHHHHhcCC
Confidence 4689999999988999999999 69999988854321111 1122233344442 2333333 455677899
Q ss_pred CEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 145 TMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 145 d~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
|.++.+. . + ..+++++|+|++
T Consensus 400 Dllig~s-~--~----~~~A~k~gIP~l 420 (513)
T TIGR01861 400 DIILTGK-R--P----GEVSKKMRVPYL 420 (513)
T ss_pred CEEEecC-c--c----chhHhhcCCCEE
Confidence 9999653 1 1 156778899875
No 426
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=77.56 E-value=8.6 Score=38.74 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
+||+++|....+...++++.+.|++++.|.+.++
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd 34 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPD 34 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 4799999999999999999999999988765544
No 427
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=77.56 E-value=6.5 Score=38.03 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=27.1
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRN 33 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47999986 668999999999999999888543
No 428
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.51 E-value=12 Score=39.37 Aligned_cols=85 Identities=11% Similarity=0.146 Sum_probs=51.3
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEeC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG 150 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~~ 150 (523)
.++|+|+|-|.+|..+++.+++.|++|++.+.+..... .....+..+ ..+.+.+ ..++|.|+..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~-~~~~~~~~~----------~~~~~~~-----~~~~dlvV~s 66 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQ-SCPYIHERY----------LENAEEF-----PEQVDLVVRS 66 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccc-hhHHHhhhh----------cCCcHHH-----hcCCCEEEEC
Confidence 36899999999999999999999999888753322110 000011100 0011111 1347888877
Q ss_pred CCcccccHHHHHHHHHcCCcee
Q 009903 151 YGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 151 ~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
.+.. ....+.+.+.+.|++++
T Consensus 67 ~gi~-~~~~~l~~A~~~g~~vv 87 (418)
T PRK00683 67 PGIK-KEHPWVQAAIASHIPVV 87 (418)
T ss_pred CCCC-CCcHHHHHHHHCCCcEE
Confidence 6543 33455666777888876
No 429
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=77.49 E-value=9.4 Score=40.85 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=30.3
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
..++|+|+|+|..|...+..|.+.|++|++++..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecC
Confidence 3579999999999999999999999999999543
No 430
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=77.45 E-value=8.2 Score=38.75 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|+|||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcC
Confidence 478999996 789999999999999999877533
No 431
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.41 E-value=5 Score=39.14 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=27.6
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.+++||+|+ |.+|..+++.+.+.|++++++..
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r 37 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDL 37 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 468999996 67899999999999999888754
No 432
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.34 E-value=7.2 Score=37.75 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=28.3
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+++||+|+ |.+|..+++.+.+.|++|+++..+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 468999985 778999999999999999988643
No 433
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.25 E-value=3.2 Score=41.29 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=31.0
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
+++|.|+|+|.+|..++..+...|++|++++.+++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 56899999999999999999999999999965443
No 434
>PRK08628 short chain dehydrogenase; Provisional
Probab=77.20 E-value=10 Score=36.41 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=28.1
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+++||+|+ |.+|..+++.+.+.|++++++..+
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~ 40 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRS 40 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCC
Confidence 478999986 678999999999999999888543
No 435
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.10 E-value=6.1 Score=40.67 Aligned_cols=92 Identities=22% Similarity=0.166 Sum_probs=51.2
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCC-cEEEEecCCCCCCccccc-cCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
...+|||.|+|..|..+++.|+.+|. +|++++.+.........+ ++..+.. .+....+.+.++... ++|.|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~------~~~~~~~~i~~~~~~-g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNA------GDPNAVEQVRELTGG-GVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCC------CchhHHHHHHHHhCC-CCCEE
Confidence 35789999999999999999999999 577775433322222222 2333321 111123344444333 68999
Q ss_pred EeCCCcccccHHHHHHHHHcC
Q 009903 148 HPGYGFLAENAVFVEMCREHG 168 (523)
Q Consensus 148 i~~~g~~~e~~~~a~~~~~~g 168 (523)
+-+.+.........+.+...|
T Consensus 264 id~~G~~~~~~~~~~~l~~~G 284 (371)
T cd08281 264 FEMAGSVPALETAYEITRRGG 284 (371)
T ss_pred EECCCChHHHHHHHHHHhcCC
Confidence 976543111122334455555
No 436
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=77.05 E-value=3.6 Score=33.39 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=29.1
Q ss_pred cceEEEEEEcCCHHHHHHHHHHHhhcCeEeeccc
Q 009903 453 SLLGKLIVWAPTREKAIERMKRALNDTIITGVPT 486 (523)
Q Consensus 453 ~~iG~vi~~g~s~~ea~~~~~~~~~~i~i~~~~~ 486 (523)
+|+-.|++.|+|.+||.+++++.++.|.+.|..+
T Consensus 51 GRvl~v~~~g~tl~eA~~~ay~~i~~I~~~g~~y 84 (93)
T PF02843_consen 51 GRVLTVVALGDTLEEAREKAYEAIEKIDFPGMFY 84 (93)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHTTSB-TTEE-
T ss_pred CeEEEEEEEcCCHHHHHHHHHHHHhccCCCCCEE
Confidence 4477899999999999999999999999998765
No 437
>PRK09126 hypothetical protein; Provisional
Probab=77.03 E-value=3.6 Score=42.57 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=29.5
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.-.|+|+|+|..|..++.++.+.|++|++++..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 457999999999999999999999999999543
No 438
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.02 E-value=5.5 Score=40.47 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=28.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.++|+|+|+ +.+|..+++.+.+.|++|+++..+
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 478999986 678999999999999999988543
No 439
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=77.00 E-value=7.7 Score=40.89 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=29.0
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcC--CcEEEEecCC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTI 104 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G--~~vi~v~~~~ 104 (523)
|+|+|||+|..|+..+..|++.| ++|.++....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 57999999999999999999988 8999996443
No 440
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=76.96 E-value=8.5 Score=39.91 Aligned_cols=102 Identities=10% Similarity=-0.009 Sum_probs=59.3
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC----------CCCCCccccccCeeEEcCCCCCC---CCCCCHHHHH
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST----------IDKDALHVKLADESVCIGEAPSS---QSYLLIPNVL 136 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~----------~~~~~~~~~~ad~~~~~~~~~~~---~~~~~~~~l~ 136 (523)
...+|+++|+-.....+++.+.+.|..|+.-+.- .+...+...+|+..... .++.. ......+.+.
T Consensus 228 ~~~ril~tG~~~~~~~i~~~iE~~G~~VV~~e~c~g~r~~~~~v~~~~dpl~alA~~yl~~-~~C~~~~~p~~~R~~~i~ 306 (377)
T TIGR03190 228 TGARFMTIGSENDDIAFMAMVESVGATIVIDDQCSGTRYFWNASKPEDDVIKAIAERYCDR-PACPTKDYPVHTRYDHVL 306 (377)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHCCCEEEEECCCcccccccccCCCCccHHHHHHHHhcCC-CCCCCcCCCHHHHHHHHH
Confidence 3568999997433445778888999998866420 11122334466655421 11111 1122467788
Q ss_pred HHHHHcCCCEEEeCC-----CcccccHHHHHHHHHcCCcee
Q 009903 137 SAAISRGCTMLHPGY-----GFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 137 ~~~~~~~id~Vi~~~-----g~~~e~~~~a~~~~~~gl~~~ 172 (523)
++++++++|+||-.. -+..+...+.+.+++.|+|++
T Consensus 307 ~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L 347 (377)
T TIGR03190 307 GLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTL 347 (377)
T ss_pred HHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEE
Confidence 999999999998431 111233345566666677655
No 441
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=76.94 E-value=3.7 Score=42.62 Aligned_cols=33 Identities=9% Similarity=0.214 Sum_probs=29.6
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+...|+|+|+|..|..++.++.+.|++|.+++.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~ 37 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEG 37 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeC
Confidence 346799999999999999999999999999954
No 442
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=76.88 E-value=7.5 Score=37.43 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=27.8
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|+|||+|+ +.+|..+++.+.+.|+++++++.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r 43 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDI 43 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 589999986 66899999999999999988753
No 443
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=76.88 E-value=17 Score=38.56 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=43.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHH---cCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEE
Q 009903 71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML 147 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~V 147 (523)
.++++|+|+|+.+..+.+..++ .|++++.+.++.+... ...... -..+.+++.++++++++|.|
T Consensus 124 ~rrvLIIGag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~---~i~gvp----------VlG~~~dl~~~v~~~~Id~V 190 (442)
T TIGR03013 124 KRRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA---YVPSEH----------VIENGDGLVEYVLRHRIDEI 190 (442)
T ss_pred CCcEEEEECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc---ccCCCc----------ccCCHHHHHHHHHhCCCCEE
Confidence 3679999999999888333322 5888887653222111 111111 13456789999999999988
Q ss_pred EeCC
Q 009903 148 HPGY 151 (523)
Q Consensus 148 i~~~ 151 (523)
+.+.
T Consensus 191 iIAl 194 (442)
T TIGR03013 191 VIAL 194 (442)
T ss_pred EEEC
Confidence 8654
No 444
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=76.81 E-value=3.7 Score=43.18 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=32.0
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
+.+.+||+|+|..|...+..|.++|++|+++..++.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 468999999999999999999999999999965443
No 445
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=76.76 E-value=8.2 Score=38.80 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=29.2
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~ 105 (523)
+||+++|.+..+..+++++.+.|++++.|.+.++
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~ 34 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPD 34 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4799999999999999999999999887765443
No 446
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=76.57 E-value=11 Score=38.39 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
...+|+|.|+|..|...++.|+.+|.++++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 457899999999999999999999999888753
No 447
>PRK08818 prephenate dehydrogenase; Provisional
Probab=76.57 E-value=16 Score=37.63 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=28.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~-G~~vi~v~~ 102 (523)
.++|+|+|. |.+|..+++++++. |++|+.++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 578999999 99999999999975 889888854
No 448
>PLN02650 dihydroflavonol-4-reductase
Probab=76.54 E-value=7.8 Score=39.48 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|+|||.|+ |.+|..+++.+.+.|++|+++..+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 468999996 789999999999999999887543
No 449
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.51 E-value=3.2 Score=41.17 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=30.1
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
+++|.|+|.|.+|..++..+.+.|++|++++.+.
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 3689999999999999999999999999996443
No 450
>PRK12937 short chain dehydrogenase; Provisional
Probab=76.39 E-value=10 Score=36.03 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=27.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.+++||+|+ |.+|..+++.+.+.|++++++.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~ 36 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNY 36 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 478999986 7799999999999999988774
No 451
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=76.39 E-value=8.6 Score=38.09 Aligned_cols=72 Identities=13% Similarity=-0.063 Sum_probs=45.5
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcC--CcEEEEecCCCC-C-Ccccccc---C-eeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 73 KILVANR-GEIAVRVIRTAHEMG--IPCVAVYSTIDK-D-ALHVKLA---D-ESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 73 ~ILi~g~-g~~~~~vi~aa~~~G--~~vi~v~~~~~~-~-~~~~~~a---d-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
+|||+|+ |.+|..+++.+.+.| ++|++++..... . .....+. . +.+. .+..+.+.+.++++..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~~~~~~~~~~~~~~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVK-------GDIGDRELVSRLFTEHQ 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEE-------cCCcCHHHHHHHHhhcC
Confidence 4899996 789999999999887 778877421100 0 0000010 0 1222 24667788888888778
Q ss_pred CCEEEeCC
Q 009903 144 CTMLHPGY 151 (523)
Q Consensus 144 id~Vi~~~ 151 (523)
+|.|+-..
T Consensus 74 ~d~vi~~a 81 (317)
T TIGR01181 74 PDAVVHFA 81 (317)
T ss_pred CCEEEEcc
Confidence 99988543
No 452
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=76.35 E-value=6.9 Score=45.61 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=30.8
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
..|+|+|+|+|..|...+..|++.|++|++++..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~ 571 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFERE 571 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecc
Confidence 4689999999999999999999999999999643
No 453
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.33 E-value=3.8 Score=41.18 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=29.4
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
+++|.|+|.|.+|..++..+.+.|++|++++.+
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 357999999999999999999999999999543
No 454
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.27 E-value=8.2 Score=37.88 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=27.5
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|++||.|+ +.+|..+++.+.+.|++|++++.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r 38 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGARVVLGDV 38 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 568999985 67899999999999999988753
No 455
>PRK12831 putative oxidoreductase; Provisional
Probab=76.18 E-value=4.8 Score=43.00 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=30.6
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.+.++|+|+|+|..|...+..|+++|++|++++.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~ 171 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEA 171 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 3568999999999999999999999999999853
No 456
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.02 E-value=7.1 Score=37.94 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=26.7
Q ss_pred ccEEEEEcC---cHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~---g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.|++||.|+ +.+|..+++.+.+.|++|++..
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGAELAFTY 39 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 478999994 4789999999999999998864
No 457
>PRK07578 short chain dehydrogenase; Provisional
Probab=76.01 E-value=17 Score=33.44 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=41.8
Q ss_pred EEEEEcC-cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHc-CCCEEEeC
Q 009903 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTMLHPG 150 (523)
Q Consensus 73 ~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~-~id~Vi~~ 150 (523)
++||+|+ +.+|..+++.+.+. ++|+++..+.. .+.+ |..+.+.+.++.+.. ++|.++-.
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------~~~~-------D~~~~~~~~~~~~~~~~id~lv~~ 62 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------DVQV-------DITDPASIRALFEKVGKVDAVVSA 62 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------ceEe-------cCCChHHHHHHHHhcCCCCEEEEC
Confidence 6899986 66899999999988 88888753221 1223 245566666666554 68988865
Q ss_pred CC
Q 009903 151 YG 152 (523)
Q Consensus 151 ~g 152 (523)
.+
T Consensus 63 ag 64 (199)
T PRK07578 63 AG 64 (199)
T ss_pred CC
Confidence 44
No 458
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=75.96 E-value=13 Score=35.96 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=27.7
Q ss_pred CccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
..|++||+|+ +.+|..+++.+.+.|+.++++..
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 3578999986 66899999999999999887643
No 459
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=75.95 E-value=10 Score=38.46 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=36.7
Q ss_pred EEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHH---HHhcCCCcEEEeeccCC
Q 009903 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEA---AAAFGNDGVYLEKYVQN 274 (523)
Q Consensus 224 ~VvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~---~~~~~~~~~lvEefI~G 274 (523)
+|||...|+-|-||..+++.+|+...=.+-+..- .....-.++||||=|.-
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T 313 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT 313 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcce
Confidence 7999999999999999999999987554433221 11112358999986654
No 460
>PRK06198 short chain dehydrogenase; Provisional
Probab=75.79 E-value=9.2 Score=36.81 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=27.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCc-EEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIP-CVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~-vi~v~~ 102 (523)
.|+++|+|+ |.+|..+++.+.+.|++ |++++.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence 478999986 67899999999999999 777754
No 461
>PRK10262 thioredoxin reductase; Provisional
Probab=75.79 E-value=8.5 Score=38.67 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=29.0
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
..++|+|+|+|+.|...+..|.++|++++++.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie 36 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT 36 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE
Confidence 35789999999999999999999999998885
No 462
>PRK08244 hypothetical protein; Provisional
Probab=75.78 E-value=4.6 Score=43.45 Aligned_cols=34 Identities=6% Similarity=0.179 Sum_probs=30.2
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
...|+|+|+|..|..++..+.+.|++|.+++..+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4579999999999999999999999999996443
No 463
>PRK07538 hypothetical protein; Provisional
Probab=75.75 E-value=4.2 Score=42.57 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=28.4
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
++|+|+|+|..|..++.+|++.|++|.++..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 4799999999999999999999999999953
No 464
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=75.74 E-value=9 Score=40.17 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=57.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCccc---c-ccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCE
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---K-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM 146 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~---~-~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~ 146 (523)
.+++.|.+.......+++.++++|.+++.+........... . ..+..+.+. ..+..++.+.+++.++|.
T Consensus 287 gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------~~~~~e~~~~i~~~~pDl 359 (410)
T cd01968 287 GKKAALYTGGVKSWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVD-------DANPRELKKLLKEKKADL 359 (410)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEe-------CCCHHHHHHHHhhcCCCE
Confidence 57888888777778899999999999988853222111100 1 111222222 356778888889899999
Q ss_pred EEeCCCcccccHHHHHHHHHcCCcee
Q 009903 147 LHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 147 Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
++.... + ...+.++|+|++
T Consensus 360 ~ig~s~---~----~~~a~~~gip~~ 378 (410)
T cd01968 360 LVAGGK---E----RYLALKLGIPFC 378 (410)
T ss_pred EEECCc---c----hhhHHhcCCCEE
Confidence 986431 1 256677888876
No 465
>PRK08589 short chain dehydrogenase; Validated
Probab=75.71 E-value=8.9 Score=37.44 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=28.7
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 578999997 678999999999999999998644
No 466
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=75.67 E-value=9.3 Score=36.97 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=27.8
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
.|+++|+|+ +.+|..+++.+.+.|++|++++.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 478999986 67899999999999999998853
No 467
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.66 E-value=8.2 Score=37.82 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=27.5
Q ss_pred ccEEEEEcCc---HHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~g---~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.|.+||+|++ .+|..+++++.+.|++|++++
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEec
Confidence 4789999986 699999999999999998874
No 468
>PRK07775 short chain dehydrogenase; Provisional
Probab=75.60 E-value=9.1 Score=37.43 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 69 CRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 69 ~~~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+.+|+++|+|+ |.+|..+++.+.+.|++|+++..
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r 42 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGAR 42 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 34578999996 77899999999999999888753
No 469
>PRK06126 hypothetical protein; Provisional
Probab=75.46 E-value=5.4 Score=43.48 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=30.8
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.+..+|+|+|+|..|..++..|.+.|++|+++...
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~ 39 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERK 39 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34568999999999999999999999999999643
No 470
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=75.43 E-value=20 Score=37.25 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=57.7
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCCCCCCcc------ccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH------VKLADESVCIGEAPSSQSYLLIPNVLSAAISRG 143 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~------~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (523)
..++++|.|.+.....+++.+.++|.++..+.......... .....+.+. ..+.+++.+.+++.+
T Consensus 278 ~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~d~~~~~~~~~~~~ 348 (399)
T cd00316 278 GGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYERREELLGEGTEVVD---------DGDLEELEELIRELK 348 (399)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHhcCCCCEEEe---------CCCHHHHHHHHhhcC
Confidence 36788888888788888899999999987775433222211 111222221 357888999999999
Q ss_pred CCEEEeCCCcccccHHHHHHHHHcCCcee
Q 009903 144 CTMLHPGYGFLAENAVFVEMCREHGINFI 172 (523)
Q Consensus 144 id~Vi~~~g~~~e~~~~a~~~~~~gl~~~ 172 (523)
+|.++... ......++.|++++
T Consensus 349 pdl~ig~~-------~~~~~~~~~~ip~~ 370 (399)
T cd00316 349 PDLIIGGS-------KGRYIAKKLGIPLV 370 (399)
T ss_pred CCEEEECC-------cHHHHHHHhCCCEE
Confidence 99999543 12245556677765
No 471
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.38 E-value=5.3 Score=40.93 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=52.8
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcCCcEEEEe-cCCCCCCcccc-ccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVY-STIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~-~~~~~~~~~~~-~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
.+++|+|.|++|...+..++.+|...+++. .+++......+ .....+... . ++ .....+.++....++|.++-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~---~-~~-~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP---S-ED-DAGAEILELTGGRGADVVIE 244 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecC---c-cc-cHHHHHHHHhCCCCCCEEEE
Confidence 389999999999999999999997766663 22333333333 222222211 1 11 23344445544457999998
Q ss_pred CCCcccccHHHHHHHHHcC
Q 009903 150 GYGFLAENAVFVEMCREHG 168 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~g 168 (523)
+.|.........+++...|
T Consensus 245 ~~G~~~~~~~ai~~~r~gG 263 (350)
T COG1063 245 AVGSPPALDQALEALRPGG 263 (350)
T ss_pred CCCCHHHHHHHHHHhcCCC
Confidence 8773211123344455545
No 472
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.37 E-value=6.7 Score=38.73 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=30.2
Q ss_pred ccEEEEEcCcH-HHHHHHHHHHHcCCcEEEEecCCCCC
Q 009903 71 QEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKD 107 (523)
Q Consensus 71 ~k~ILi~g~g~-~~~~vi~aa~~~G~~vi~v~~~~~~~ 107 (523)
.+.|||.|+|. .|+.++..+.++|.++++.+-+.+..
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~ 75 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN 75 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccch
Confidence 57899999764 79999999999999888886555443
No 473
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=75.36 E-value=9.8 Score=37.40 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=27.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+|+|+|+|..|...+..|++.|++|.+++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence 589999999999999999999999999964
No 474
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=75.36 E-value=7.2 Score=41.68 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=29.9
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+.++|+|+|+|..|...+..|++.|++|++++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~ 172 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDR 172 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 568999999999999999999999999988853
No 475
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=75.32 E-value=14 Score=38.51 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=44.7
Q ss_pred ccEEEEEcC-----------------cHHHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHH
Q 009903 71 QEKILVANR-----------------GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIP 133 (523)
Q Consensus 71 ~k~ILi~g~-----------------g~~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~ 133 (523)
.|+|||.|+ |.+|..+++++.++|.+|++++.+..... ......+ +..+.+
T Consensus 188 gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~-----~~~~~~~-------dv~~~~ 255 (399)
T PRK05579 188 GKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPT-----PAGVKRI-------DVESAQ 255 (399)
T ss_pred CCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccC-----CCCcEEE-------ccCCHH
Confidence 578999987 45799999999999999999964332111 1111222 255677
Q ss_pred HHHHHHHH--cCCCEEEeC
Q 009903 134 NVLSAAIS--RGCTMLHPG 150 (523)
Q Consensus 134 ~l~~~~~~--~~id~Vi~~ 150 (523)
++.+.+.+ .++|.++-.
T Consensus 256 ~~~~~v~~~~~~~DilI~~ 274 (399)
T PRK05579 256 EMLDAVLAALPQADIFIMA 274 (399)
T ss_pred HHHHHHHHhcCCCCEEEEc
Confidence 77776654 247877743
No 476
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=75.30 E-value=4.4 Score=42.87 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=28.7
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHc--CCcEEEEecC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEM--GIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~--G~~vi~v~~~ 103 (523)
|++|+|+|+|.-|...++.++++ +++|++++.+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 46899999999999999999987 6889999644
No 477
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=75.22 E-value=4 Score=40.63 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=29.4
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
|+++|.|+|.|.+|..+++.+.+.|++|++.+.
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~ 33 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDR 33 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcC
Confidence 567899999999999999999999999988743
No 478
>PRK07877 hypothetical protein; Provisional
Probab=75.22 E-value=4.7 Score=45.32 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=27.3
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCC--cEEEEec
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGI--PCVAVYS 102 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~--~vi~v~~ 102 (523)
...+|+|+|.| .|..++..+.+.|+ ++++++.
T Consensus 106 ~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~ 139 (722)
T PRK07877 106 GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF 139 (722)
T ss_pred hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC
Confidence 46799999998 89999999999996 6777753
No 479
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.20 E-value=8.7 Score=38.40 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=49.3
Q ss_pred CCCccEEEEEcCcHHHHHHHHHHHHcCCcEEEE-ecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHH----c
Q 009903 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAV-YSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS----R 142 (523)
Q Consensus 68 ~~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v-~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 142 (523)
-.+..++||+|+|++|+-.+..|+.+|..=+++ +..........++--..+.- ..... ..+.+.+.+++ .
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~--~~~~~---~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDP--SSHKS---SPQELAELVEKALGKK 241 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEee--ccccc---cHHHHHHHHHhhcccc
Confidence 456789999999999999999999999775554 33333333333443333321 11111 34444444432 4
Q ss_pred CCCEEEeCCCc
Q 009903 143 GCTMLHPGYGF 153 (523)
Q Consensus 143 ~id~Vi~~~g~ 153 (523)
.+|..+-+.|.
T Consensus 242 ~~d~~~dCsG~ 252 (354)
T KOG0024|consen 242 QPDVTFDCSGA 252 (354)
T ss_pred CCCeEEEccCc
Confidence 48888887765
No 480
>PRK06270 homoserine dehydrogenase; Provisional
Probab=75.15 E-value=28 Score=35.47 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=20.1
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHc
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEM 93 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~ 93 (523)
|.-+|.|+|.|..|..+++.+.+.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHh
Confidence 456899999999999888888755
No 481
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.14 E-value=4.6 Score=40.85 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=30.5
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
.++|.|+|+|.+|..++..+...|++|++++.++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 5789999999999999999999999999996443
No 482
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=75.04 E-value=8.5 Score=40.65 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=30.2
Q ss_pred cEEEEEcCcHHHHHHHHHHHHcC--CcEEEEecCCC
Q 009903 72 EKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTID 105 (523)
Q Consensus 72 k~ILi~g~g~~~~~vi~aa~~~G--~~vi~v~~~~~ 105 (523)
++|+|+|+|-.|+..+..|++.| +++.++..+..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r 36 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 57999999999999999999999 99999965533
No 483
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=75.00 E-value=8.6 Score=40.51 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=29.7
Q ss_pred CccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecC
Q 009903 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 70 ~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|...|+|+|+|..|...+..+.+.|.+|.+++..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 4457999999999999999999999999999643
No 484
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=74.98 E-value=8.8 Score=32.91 Aligned_cols=79 Identities=9% Similarity=0.073 Sum_probs=44.2
Q ss_pred EEEEEcCcH--HHHHHHHHHHHcCCcEEEEecCCCCCCccccccCeeEEcCCCCC-CCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 73 KILVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPS-SQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 73 ~ILi~g~g~--~~~~vi~aa~~~G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~-~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
|||+++... -...+++++.+.|++|.++....+.........-..+.+..+.. .-.+...-.+..++++.++|.|+.
T Consensus 1 KIl~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~ 80 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHC 80 (139)
T ss_pred CEEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEE
Confidence 467776543 35678999999999999997644321111111112222210100 011112335667788899999986
Q ss_pred CC
Q 009903 150 GY 151 (523)
Q Consensus 150 ~~ 151 (523)
..
T Consensus 81 h~ 82 (139)
T PF13477_consen 81 HT 82 (139)
T ss_pred ec
Confidence 43
No 485
>PRK11579 putative oxidoreductase; Provisional
Probab=74.95 E-value=8.4 Score=39.33 Aligned_cols=141 Identities=10% Similarity=-0.003 Sum_probs=74.9
Q ss_pred cEEEEEcCcHHHHH-HHHHHHHc-CCcEEEEecCCCCCCccccccCeeEEcCCCCCCCCCCCHHHHHHHHHHcCCCEEEe
Q 009903 72 EKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP 149 (523)
Q Consensus 72 k~ILi~g~g~~~~~-vi~aa~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~Vi~ 149 (523)
-+|.|+|.|.++.. .+.++.+. +++++.+. +.+... ..+.+. ...-+.+.++++ ...++|+|+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~-d~~~~~----~~~~~~------~~~~~~~~~ell---~~~~vD~V~I 70 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVS-SSDATK----VKADWP------TVTVVSEPQHLF---NDPNIDLIVI 70 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEE-CCCHHH----HHhhCC------CCceeCCHHHHh---cCCCCCEEEE
Confidence 58999999999874 56666665 78888774 333211 111110 001245666554 3457999987
Q ss_pred CCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCC-ccCCCHHHHHHHHH--hcCCcEEE
Q 009903 150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--ELGFPVMI 226 (523)
Q Consensus 150 ~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~~~r~~l~~~Gip~p~~~~-~~~~s~~e~~~~~~--~~g~P~Vv 226 (523)
+.... ....++..+.+.|.+++.--|-+. ...+=..+.+.+++.|+..--.+. +.......+.+.++ .+|-+..+
T Consensus 71 ~tp~~-~H~~~~~~al~aGkhVl~EKPla~-t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~~~ 148 (346)
T PRK11579 71 PTPND-THFPLAKAALEAGKHVVVDKPFTV-TLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAYF 148 (346)
T ss_pred cCCcH-HHHHHHHHHHHCCCeEEEeCCCCC-CHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeEEE
Confidence 65321 235666667778887764322111 112223455566777766422110 11223345555554 35666655
Q ss_pred Ee
Q 009903 227 KA 228 (523)
Q Consensus 227 KP 228 (523)
+.
T Consensus 149 ~~ 150 (346)
T PRK11579 149 ES 150 (346)
T ss_pred EE
Confidence 54
No 486
>PRK12746 short chain dehydrogenase; Provisional
Probab=74.91 E-value=10 Score=36.30 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=26.2
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEE
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAV 100 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v 100 (523)
.++++|+|+ |.+|..+++.+.+.|++++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999995 678999999999999998775
No 487
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=74.91 E-value=12 Score=38.75 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=29.5
Q ss_pred CCccEEEEEcC-cHHHHHHHHHHHHc-CCcEEEEecC
Q 009903 69 CRQEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYST 103 (523)
Q Consensus 69 ~~~k~ILi~g~-g~~~~~vi~aa~~~-G~~vi~v~~~ 103 (523)
.++++|.|+|+ |..|..+++-+.+. ++++..+.+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~ 72 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD 72 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh
Confidence 46789999997 78899999999999 7888888654
No 488
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=74.89 E-value=7 Score=36.65 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=28.8
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
||++.|+|.|.+|-.+++.+.+.|++|++-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs 31 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGS 31 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEec
Confidence 5789999999999999999999999999874
No 489
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.85 E-value=13 Score=35.93 Aligned_cols=31 Identities=35% Similarity=0.410 Sum_probs=27.2
Q ss_pred ccEEEEEcC---cHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~---g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.|+++|+|+ +.+|..+++.+.+.|++|++..
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEec
Confidence 478999996 5789999999999999998874
No 490
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=74.85 E-value=12 Score=34.15 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=27.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCc-EEEEecC
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIP-CVAVYST 103 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~-vi~v~~~ 103 (523)
+|+|+|.|..|..+++.+.+.|+. +++++.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999997 7777543
No 491
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.81 E-value=12 Score=36.29 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=27.4
Q ss_pred ccEEEEEcC---cHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~---g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
.|+++|+|+ +.+|..+++.+.+.|++|++++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~ 40 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTY 40 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEec
Confidence 478999997 4799999999999999998874
No 492
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.78 E-value=10 Score=35.82 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=28.4
Q ss_pred ccEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 71 ~k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
.++|+|+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999996 668999999999999999988643
No 493
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=74.74 E-value=12 Score=39.70 Aligned_cols=34 Identities=6% Similarity=0.041 Sum_probs=29.8
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHc----CCcEEEEecCC
Q 009903 71 QEKILVANRGEIAVRVIRTAHEM----GIPCVAVYSTI 104 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~----G~~vi~v~~~~ 104 (523)
+++|+|+|+|..|+..+..|++. |++|.++....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~ 39 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD 39 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence 46899999999999999999999 99999996443
No 494
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=74.69 E-value=4.8 Score=38.55 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=27.7
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|++||+|+ |.+|..+++.+.+.|++|++++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999995 778999999999999999988543
No 495
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=74.65 E-value=4.5 Score=41.78 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=31.1
Q ss_pred CCccEEEEEcCcHHHHHHHHHHHHcCCcEEEEecCC
Q 009903 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (523)
Q Consensus 69 ~~~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~~~~ 104 (523)
+|...|+|+|+|..|..++..+.+.|++|.+++...
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 345689999999999999999999999999996443
No 496
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=74.58 E-value=17 Score=37.34 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=56.7
Q ss_pred EEEEEcCcH-----HHHHHHHHHHHcCCc-EEEEecCCC-CCCccccccCeeEEcCCCCCC--CCCCCH----------H
Q 009903 73 KILVANRGE-----IAVRVIRTAHEMGIP-CVAVYSTID-KDALHVKLADESVCIGEAPSS--QSYLLI----------P 133 (523)
Q Consensus 73 ~ILi~g~g~-----~~~~vi~aa~~~G~~-vi~v~~~~~-~~~~~~~~ad~~~~~~~~~~~--~~~~~~----------~ 133 (523)
+|++.++|. .+..+++++.+.|++ +.++..... ..........+...++..... ....+. -
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVL 81 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHH
Confidence 456655543 378899999999995 666532221 112222223333334322211 111111 1
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCceeCCCHHHHHHhCCHH
Q 009903 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKS 186 (523)
Q Consensus 134 ~l~~~~~~~~id~Vi~~~g~~~e~~~~a~~~~~~gl~~~g~~~~~~~~~~dK~ 186 (523)
....+.+++++|+|+.+.|+.+-- ..-+...+|+|++---.+...-..||.
T Consensus 82 ~a~~il~~~kPd~vig~Ggyvs~P--~~~Aa~~~~iPv~ihEqn~~~G~ank~ 132 (357)
T COG0707 82 QARKILKKLKPDVVIGTGGYVSGP--VGIAAKLLGIPVIIHEQNAVPGLANKI 132 (357)
T ss_pred HHHHHHHHcCCCEEEecCCccccH--HHHHHHhCCCCEEEEecCCCcchhHHH
Confidence 233467889999999877764432 223344556776633333333333443
No 497
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=74.54 E-value=5.2 Score=36.78 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=26.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHcCCcEEEE
Q 009903 73 KILVANRGEIAVRVIRTAHEMGIPCVAV 100 (523)
Q Consensus 73 ~ILi~g~g~~~~~vi~aa~~~G~~vi~v 100 (523)
+|+|+|+|..|...+..+++.|++++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEE
Confidence 5899999999999999999999999999
No 498
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=74.39 E-value=3.9 Score=42.45 Aligned_cols=31 Identities=6% Similarity=0.134 Sum_probs=29.0
Q ss_pred ccEEEEEcCcHHHHHHHHHHHHcCCcEEEEe
Q 009903 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (523)
Q Consensus 71 ~k~ILi~g~g~~~~~vi~aa~~~G~~vi~v~ 101 (523)
...|+|+|+|..|..++.++++.|++|.++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E 32 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLE 32 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEc
Confidence 4679999999999999999999999999994
No 499
>PRK07677 short chain dehydrogenase; Provisional
Probab=74.36 E-value=8 Score=37.16 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=27.3
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEecC
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYST 103 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~~ 103 (523)
|++||+|+ +.+|..+++.+.+.|+.|++++.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~ 34 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRT 34 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67999986 568999999999999999888543
No 500
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=74.34 E-value=16 Score=34.51 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=27.0
Q ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCcEEEEec
Q 009903 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (523)
Q Consensus 72 k~ILi~g~-g~~~~~vi~aa~~~G~~vi~v~~ 102 (523)
+++||+|+ |.+|..+++.+.+.|++|+++..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~ 37 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYA 37 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 68999986 67899999999999999977754
Done!