Query 009904
Match_columns 523
No_of_seqs 255 out of 875
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 15:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 6.6E-18 2.2E-22 148.7 7.2 95 359-453 14-117 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 1.5E-16 5.1E-21 131.8 5.0 66 372-437 6-71 (82)
3 1a0a_A BHLH, protein (phosphat 99.5 1.8E-15 6.1E-20 120.5 1.4 54 373-426 3-62 (63)
4 1an4_A Protein (upstream stimu 99.5 5.1E-15 1.8E-19 116.9 3.3 56 371-426 4-64 (65)
5 4h10_B Circadian locomoter out 99.5 1.3E-14 4.3E-19 118.7 4.5 58 371-429 7-65 (71)
6 4h10_A ARYL hydrocarbon recept 99.5 8.3E-15 2.8E-19 120.0 1.4 54 369-423 6-63 (73)
7 1hlo_A Protein (transcription 99.4 7.7E-14 2.6E-18 114.5 6.0 62 373-435 13-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1.1E-13 3.7E-18 114.1 6.2 62 374-436 4-67 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 3.5E-13 1.2E-17 113.3 6.2 60 374-434 8-70 (88)
10 3u5v_A Protein MAX, transcript 99.3 8E-13 2.7E-17 109.0 3.8 57 374-430 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.5E-11 5.3E-16 101.9 7.2 61 374-435 3-66 (80)
12 4ath_A MITF, microphthalmia-as 99.0 3.2E-10 1.1E-14 95.5 5.2 69 384-453 4-82 (83)
13 4f3l_A Mclock, circadian locom 98.9 1.1E-09 3.6E-14 108.7 5.7 54 371-425 11-65 (361)
14 1mdy_A Protein (MYOD BHLH doma 98.8 1.8E-09 6.2E-14 87.4 4.7 52 374-426 14-67 (68)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.5E-09 5.3E-14 109.1 3.8 55 369-424 10-68 (387)
16 2ql2_B Neurod1, neurogenic dif 98.8 4.2E-09 1.4E-13 83.3 5.4 52 375-426 5-58 (60)
17 2lfh_A DNA-binding protein inh 98.2 3.3E-07 1.1E-11 74.8 1.9 45 378-423 20-67 (68)
18 4aya_A DNA-binding protein inh 97.6 9.5E-05 3.3E-09 63.9 6.4 48 380-427 33-82 (97)
19 2wt7_A Proto-oncogene protein 51.4 12 0.0004 29.3 3.3 46 380-439 1-46 (63)
20 3coq_A Regulatory protein GAL4 38.9 23 0.0008 27.8 3.3 28 415-442 44-71 (89)
21 2er8_A Regulatory protein Leu3 33.4 28 0.00095 26.6 2.8 22 415-436 48-69 (72)
22 1zme_C Proline utilization tra 31.9 30 0.001 26.1 2.8 21 416-436 44-64 (70)
23 2wuj_A Septum site-determining 30.7 48 0.0016 25.5 3.7 30 409-438 27-56 (57)
24 3muj_A Transcription factor CO 27.8 61 0.0021 29.6 4.5 35 386-421 95-133 (138)
25 2jee_A YIIU; FTSZ, septum, coi 27.1 53 0.0018 27.6 3.6 27 411-437 15-41 (81)
26 1hwt_C Protein (heme activator 26.9 31 0.0011 26.8 2.1 22 415-436 57-78 (81)
27 1pyi_A Protein (pyrimidine pat 24.6 61 0.0021 25.9 3.5 24 415-438 47-70 (96)
28 1dh3_A Transcription factor CR 24.6 49 0.0017 25.3 2.8 22 416-437 22-43 (55)
29 1p3q_Q VPS9P, vacuolar protein 21.4 1E+02 0.0035 24.0 4.0 27 377-403 2-28 (54)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.71 E-value=6.6e-18 Score=148.71 Aligned_cols=95 Identities=27% Similarity=0.377 Sum_probs=50.7
Q ss_pred CcccchhccccccccccccHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhh----
Q 009904 359 KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLSMK---- 431 (523)
Q Consensus 359 ke~~i~~RarR~qa~~~HslaERrRRerINer~k~LqsLVP~~~K---~tDKASILdeAIdYIK~LQ~QVq~Le~k---- 431 (523)
.++..+.++++++++.+|+++||+||++||++|.+|++|||.|.+ ..+|++||+.||+||++||.+++.|+..
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~ 93 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 93 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888899999999999999999999999999999853 2389999999999999999999999854
Q ss_pred --HhhcCCCccchhhHHhHHHhhh
Q 009904 432 --LATVNPRLDFNIEELLAKDVLQ 453 (523)
Q Consensus 432 --l~~vnp~l~~~ie~L~~~d~~q 453 (523)
+...|..|...|++|...+..|
T Consensus 94 ~~l~~~n~~L~~riqeLE~~a~~~ 117 (118)
T 4ati_A 94 KKLEHANRHLLLRVQELEMQARAH 117 (118)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667888888888887766544
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=1.5e-16 Score=131.82 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=59.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 009904 372 ATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 437 (523)
Q Consensus 372 a~~~HslaERrRRerINer~k~LqsLVP~~~K~tDKASILdeAIdYIK~LQ~QVq~Le~kl~~vnp 437 (523)
....|+++||+||++||++|.+|++|||+++...+||+||++||+||++||.+++.|+.++..+..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999998444599999999999999999999999998876543
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.52 E-value=1.8e-15 Score=120.48 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=47.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCCCCC------CCchhhHHHHHHHHHHHHHHHH
Q 009904 373 TNSHSLAERVRREKISERMKFLQDLVPGCSKV------TGKAVMLDEIINYVQSLQRQVE 426 (523)
Q Consensus 373 ~~~HslaERrRRerINer~k~LqsLVP~~~K~------tDKASILdeAIdYIK~LQ~QVq 426 (523)
..+|+++||+||++||+.|.+|+.|||.+.+. .+||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999976332 3799999999999999998764
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=5.1e-15 Score=116.94 Aligned_cols=56 Identities=27% Similarity=0.433 Sum_probs=49.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhcCCCCCC-----CCCchhhHHHHHHHHHHHHHHHH
Q 009904 371 QATNSHSLAERVRREKISERMKFLQDLVPGCSK-----VTGKAVMLDEIINYVQSLQRQVE 426 (523)
Q Consensus 371 qa~~~HslaERrRRerINer~k~LqsLVP~~~K-----~tDKASILdeAIdYIK~LQ~QVq 426 (523)
+....|+++||+||++||+.|.+|++|||.|.. ..+|++||+.||+||+.||.+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345689999999999999999999999999862 23999999999999999998753
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=118.73 Aligned_cols=58 Identities=22% Similarity=0.431 Sum_probs=52.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009904 371 QATNSHSLAERVRREKISERMKFLQDLVPGCS-KVTGKAVMLDEIINYVQSLQRQVEFLS 429 (523)
Q Consensus 371 qa~~~HslaERrRRerINer~k~LqsLVP~~~-K~tDKASILdeAIdYIK~LQ~QVq~Le 429 (523)
+...+|+++||+||++||++|.+|++|||.+. |+ ||++||+.||+||+.||.++.-|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~-dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCC-CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34468999999999999999999999999765 65 999999999999999999987664
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=8.3e-15 Score=120.03 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=48.3
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 009904 369 RGQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQR 423 (523)
Q Consensus 369 R~qa~~~HslaERrRRerINer~k~LqsLVP~~----~K~tDKASILdeAIdYIK~LQ~ 423 (523)
+.+++..|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 344556899999999999999999999999988 465 999999999999999973
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=7.7e-14 Score=114.52 Aligned_cols=62 Identities=27% Similarity=0.468 Sum_probs=57.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhHhhc
Q 009904 373 TNSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435 (523)
Q Consensus 373 ~~~HslaERrRRerINer~k~LqsLVP~~--~K~tDKASILdeAIdYIK~LQ~QVq~Le~kl~~v 435 (523)
...|+.+||+||.+||+.|..|++|||.+ .|+ +|++||..||+||+.||.+++.|+.+++.+
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999987 465 999999999999999999999999987754
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.43 E-value=1.1e-13 Score=114.06 Aligned_cols=62 Identities=27% Similarity=0.473 Sum_probs=56.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhHhhcC
Q 009904 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN 436 (523)
Q Consensus 374 ~~HslaERrRRerINer~k~LqsLVP~~--~K~tDKASILdeAIdYIK~LQ~QVq~Le~kl~~vn 436 (523)
..|+..||+||++||+.|..|+++||.+ .|+ +|++||..||+||+.||.+++.|+.+++.+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999985 565 9999999999999999999999988876653
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=3.5e-13 Score=113.34 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=53.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhHhh
Q 009904 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT 434 (523)
Q Consensus 374 ~~HslaERrRRerINer~k~LqsLVP~~---~K~tDKASILdeAIdYIK~LQ~QVq~Le~kl~~ 434 (523)
..|+..||+||+.||++|..|+++||.+ .|. +|++||..||+||++||.+.+.|..+.+.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999976 465 99999999999999999999888766543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.31 E-value=8e-13 Score=108.96 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=49.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 009904 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSM 430 (523)
Q Consensus 374 ~~HslaERrRRerINer~k~LqsLVP~~---~K~tDKASILdeAIdYIK~LQ~QVq~Le~ 430 (523)
..|+..||+||+.||+.|.+|+++||.+ .|..+|+.||..||+||++||++|++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999953 34326889999999999999999998764
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.22 E-value=1.5e-11 Score=101.92 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=54.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhHhhc
Q 009904 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435 (523)
Q Consensus 374 ~~HslaERrRRerINer~k~LqsLVP~~---~K~tDKASILdeAIdYIK~LQ~QVq~Le~kl~~v 435 (523)
..|+..||+||..||+.|..|+++||.+ .|. +|+.||..||+||+.||.+.+.|..+.+.+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999965 454 799999999999999999999988876554
No 12
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.99 E-value=3.2e-10 Score=95.46 Aligned_cols=69 Identities=28% Similarity=0.431 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhcCCCCC----CCCCchhhHHHHHHHHHHHHHHHHHHH------hhHhhcCCCccchhhHHhHHHhhh
Q 009904 384 REKISERMKFLQDLVPGCS----KVTGKAVMLDEIINYVQSLQRQVEFLS------MKLATVNPRLDFNIEELLAKDVLQ 453 (523)
Q Consensus 384 RerINer~k~LqsLVP~~~----K~tDKASILdeAIdYIK~LQ~QVq~Le------~kl~~vnp~l~~~ie~L~~~d~~q 453 (523)
|+.||++|++|..|||.++ +. +|++||..||+||++||++++.+. .+++..|.+|.+.|++|..++..|
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~-nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa~~h 82 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRW-NKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARAH 82 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCC-SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHhhhhhhccCCCCCCcccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHc
Confidence 8999999999999999874 44 899999999999999998776654 336778889999999998887665
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=1.1e-09 Score=108.70 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=41.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCchhhHHHHHHHHHHHHHHH
Q 009904 371 QATNSHSLAERVRREKISERMKFLQDLVP-GCSKVTGKAVMLDEIINYVQSLQRQV 425 (523)
Q Consensus 371 qa~~~HslaERrRRerINer~k~LqsLVP-~~~K~tDKASILdeAIdYIK~LQ~QV 425 (523)
.+..+|+++||+||++||+.|.+|+.||| ...|+ ||++||..||+|||.|+...
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence 34558999999999999999999999999 44566 99999999999999998643
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.85 E-value=1.8e-09 Score=87.38 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=46.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 009904 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE 426 (523)
Q Consensus 374 ~~HslaERrRRerINer~k~LqsLVP~~--~K~tDKASILdeAIdYIK~LQ~QVq 426 (523)
..|+..||+|+..||+.|..|+++||.. .|+ +|..||..||+||++||+.++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 3599999999999999999999999964 454 899999999999999998653
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.81 E-value=1.5e-09 Score=109.05 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=48.3
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhcCC----CCCCCCCchhhHHHHHHHHHHHHHH
Q 009904 369 RGQATNSHSLAERVRREKISERMKFLQDLVP----GCSKVTGKAVMLDEIINYVQSLQRQ 424 (523)
Q Consensus 369 R~qa~~~HslaERrRRerINer~k~LqsLVP----~~~K~tDKASILdeAIdYIK~LQ~Q 424 (523)
.++++++|+.+||+||++||+.|.+|+.||| ...|+ ||++||..||+|||.|+..
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 3455679999999999999999999999999 45676 9999999999999999843
No 16
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.81 E-value=4.2e-09 Score=83.29 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 009904 375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE 426 (523)
Q Consensus 375 ~HslaERrRRerINer~k~LqsLVP~~--~K~tDKASILdeAIdYIK~LQ~QVq 426 (523)
.|+..||+|+..||+.|..|+.+||.. +++.+|..+|..||+||+.||+.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999965 2334899999999999999998764
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.22 E-value=3.3e-07 Score=74.81 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHH
Q 009904 378 LAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQR 423 (523)
Q Consensus 378 laERrRRerINer~k~LqsLVP~~---~K~tDKASILdeAIdYIK~LQ~ 423 (523)
-.||+|+..||+.|..||++||.. .|+ +|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 457889999999999999999965 454 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.60 E-value=9.5e-05 Score=63.93 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 009904 380 ERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEF 427 (523)
Q Consensus 380 ERrRRerINer~k~LqsLVP~~--~K~tDKASILdeAIdYIK~LQ~QVq~ 427 (523)
||.|=..||+.|..||.+||.. +++..|..+|..||+||+.||..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999964 33348999999999999999988764
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.38 E-value=12 Score=29.32 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhHhhcCCCc
Q 009904 380 ERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL 439 (523)
Q Consensus 380 ERrRRerINer~k~LqsLVP~~~K~tDKASILdeAIdYIK~LQ~QVq~Le~kl~~vnp~l 439 (523)
||++|.+...++.+.+ |. ..-.+||..|+.+|+.|+.+...+...+
T Consensus 1 Ekr~rrrerNR~AA~r-----cR---------~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAK-----CR---------NRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHH-----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHH-----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777666 22 2245777888888888877766655443
No 20
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=38.93 E-value=23 Score=27.82 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCCCccch
Q 009904 415 INYVQSLQRQVEFLSMKLATVNPRLDFN 442 (523)
Q Consensus 415 IdYIK~LQ~QVq~Le~kl~~vnp~l~~~ 442 (523)
..||..|+.+|+.||..+..+.+..+++
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~l~ 71 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPREDLD 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhH
Confidence 4699999999999999999988876543
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=33.39 E-value=28 Score=26.59 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhHhhcC
Q 009904 415 INYVQSLQRQVEFLSMKLATVN 436 (523)
Q Consensus 415 IdYIK~LQ~QVq~Le~kl~~vn 436 (523)
-.||..|+.+|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887653
No 22
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=31.92 E-value=30 Score=26.09 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhHhhcC
Q 009904 416 NYVQSLQRQVEFLSMKLATVN 436 (523)
Q Consensus 416 dYIK~LQ~QVq~Le~kl~~vn 436 (523)
.||..|+.+++.|+..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888887776554
No 23
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.67 E-value=48 Score=25.51 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhcCCC
Q 009904 409 VMLDEIINYVQSLQRQVEFLSMKLATVNPR 438 (523)
Q Consensus 409 SILdeAIdYIK~LQ~QVq~Le~kl~~vnp~ 438 (523)
..|++.++-+..|..+++.|+.++..++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 569999999999999999999998877654
No 24
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=27.78 E-value=61 Score=29.63 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHH
Q 009904 386 KISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSL 421 (523)
Q Consensus 386 rINer~k~LqsLVP~~----~K~tDKASILdeAIdYIK~L 421 (523)
.|.-.|+.|+.+||.- .++ -|-.||..|-|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 3888999999999843 344 7999999999998876
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.06 E-value=53 Score=27.57 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 009904 411 LDEIINYVQSLQRQVEFLSMKLATVNP 437 (523)
Q Consensus 411 LdeAIdYIK~LQ~QVq~Le~kl~~vnp 437 (523)
++.||+-|.-||.+|++|+.+...++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998776543
No 26
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.93 E-value=31 Score=26.79 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhHhhcC
Q 009904 415 INYVQSLQRQVEFLSMKLATVN 436 (523)
Q Consensus 415 IdYIK~LQ~QVq~Le~kl~~vn 436 (523)
-.||..|+.+|+.||..+..++
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999998877654
No 27
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.60 E-value=61 Score=25.88 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCCC
Q 009904 415 INYVQSLQRQVEFLSMKLATVNPR 438 (523)
Q Consensus 415 IdYIK~LQ~QVq~Le~kl~~vnp~ 438 (523)
..||+.|+.+|+.||..+..+...
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~ 70 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 459999999999999988876543
No 28
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.56 E-value=49 Score=25.34 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhHhhcCC
Q 009904 416 NYVQSLQRQVEFLSMKLATVNP 437 (523)
Q Consensus 416 dYIK~LQ~QVq~Le~kl~~vnp 437 (523)
.||..|+.+|..|+.++..+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888898888888887766543
No 29
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.35 E-value=1e+02 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 009904 377 SLAERVRREKISERMKFLQDLVPGCSK 403 (523)
Q Consensus 377 slaERrRRerINer~k~LqsLVP~~~K 403 (523)
.+++|-+|..-++-++.|+.+.|..++
T Consensus 2 ~~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 2 SLIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 357888999999999999999998766
Done!