Query 009906
Match_columns 522
No_of_seqs 185 out of 1140
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02635 disproportionating en 100.0 8E-137 2E-141 1111.8 44.7 452 68-521 9-461 (538)
2 PRK11052 malQ 4-alpha-glucanot 100.0 2E-132 3E-137 1107.7 43.3 462 29-501 51-568 (695)
3 PRK14508 4-alpha-glucanotransf 100.0 7E-130 2E-134 1055.0 42.6 428 86-521 3-435 (497)
4 TIGR00217 malQ 4-alpha-glucano 100.0 1E-126 3E-131 1032.2 41.9 430 86-521 12-452 (513)
5 PRK14507 putative bifunctional 100.0 8E-125 2E-129 1105.2 42.0 461 30-501 66-599 (1693)
6 PF02446 Glyco_hydro_77: 4-alp 100.0 5E-123 1E-127 1004.7 33.9 415 94-521 1-429 (496)
7 PRK14510 putative bifunctional 100.0 9E-120 2E-124 1057.6 42.9 442 30-501 675-1145(1221)
8 COG1640 MalQ 4-alpha-glucanotr 100.0 8E-117 2E-121 945.3 36.9 422 86-520 12-449 (520)
9 PLN03236 4-alpha-glucanotransf 100.0 8E-108 2E-112 907.0 37.2 401 86-497 58-640 (745)
10 PLN02950 4-alpha-glucanotransf 100.0 6E-103 1E-107 891.1 36.1 410 86-509 258-826 (909)
11 PRK12313 glycogen branching en 97.5 0.0031 6.7E-08 71.6 17.4 134 286-437 222-368 (633)
12 PLN02447 1,4-alpha-glucan-bran 97.1 0.007 1.5E-07 69.8 14.8 184 286-485 302-516 (758)
13 PRK14705 glycogen branching en 96.9 0.024 5.2E-07 68.6 17.3 134 286-437 817-964 (1224)
14 PRK05402 glycogen branching en 96.9 0.03 6.5E-07 64.7 16.8 32 103-134 259-290 (726)
15 TIGR01515 branching_enzym alph 96.8 0.035 7.7E-07 62.9 16.5 133 286-436 208-354 (613)
16 PLN02960 alpha-amylase 96.7 0.037 8.1E-07 64.6 16.0 135 285-438 467-618 (897)
17 PRK14706 glycogen branching en 96.0 0.18 3.9E-06 57.7 15.9 132 286-434 219-361 (639)
18 PF00128 Alpha-amylase: Alpha 95.6 0.033 7.1E-07 55.4 7.4 179 284-491 52-279 (316)
19 PRK10785 maltodextrin glucosid 95.3 0.24 5.3E-06 56.1 13.7 128 285-436 227-378 (598)
20 TIGR02104 pulA_typeI pullulana 95.2 0.22 4.7E-06 56.5 12.8 23 284-306 229-251 (605)
21 PRK03705 glycogen debranching 94.8 0.25 5.4E-06 56.7 12.1 181 284-491 242-451 (658)
22 TIGR02100 glgX_debranch glycog 94.7 0.42 9E-06 55.2 13.6 122 284-433 245-382 (688)
23 smart00642 Aamy Alpha-amylase 94.7 0.086 1.9E-06 50.0 6.7 70 94-165 4-73 (166)
24 PRK09441 cytoplasmic alpha-amy 93.7 0.73 1.6E-05 50.7 12.4 45 89-134 2-46 (479)
25 TIGR02102 pullulan_Gpos pullul 92.3 0.8 1.7E-05 55.5 10.9 23 284-306 555-577 (1111)
26 PLN02361 alpha-amylase 91.6 1.6 3.4E-05 47.4 11.2 22 285-306 77-98 (401)
27 PLN00196 alpha-amylase; Provis 89.9 4.3 9.3E-05 44.4 12.7 44 90-134 24-68 (428)
28 TIGR02403 trehalose_treC alpha 88.7 0.7 1.5E-05 51.8 5.8 59 102-165 20-78 (543)
29 PRK14510 putative bifunctional 87.5 5.2 0.00011 49.3 12.5 44 245-306 226-269 (1221)
30 PF14871 GHL6: Hypothetical gl 86.9 2.3 5E-05 39.1 7.1 78 286-377 46-123 (132)
31 TIGR02456 treS_nterm trehalose 86.2 4.9 0.00011 45.0 10.6 32 103-135 22-53 (539)
32 PLN03244 alpha-amylase; Provis 86.2 4.4 9.6E-05 47.5 10.2 139 283-437 440-592 (872)
33 TIGR02103 pullul_strch alpha-1 86.0 9.5 0.00021 45.6 13.1 22 285-306 405-426 (898)
34 PRK10933 trehalose-6-phosphate 83.2 2 4.4E-05 48.3 5.9 60 102-166 26-85 (551)
35 TIGR02456 treS_nterm trehalose 82.5 2.1 4.5E-05 47.9 5.6 56 108-165 24-79 (539)
36 TIGR02402 trehalose_TreZ malto 81.5 6.8 0.00015 44.1 9.2 115 285-436 161-286 (542)
37 TIGR02403 trehalose_treC alpha 81.0 12 0.00027 42.0 11.0 29 284-314 75-103 (543)
38 PF00128 Alpha-amylase: Alpha 80.0 1.5 3.3E-05 43.5 3.2 55 106-165 1-55 (316)
39 PRK12568 glycogen branching en 77.9 14 0.00029 43.3 10.3 133 284-435 319-466 (730)
40 TIGR02402 trehalose_TreZ malto 77.3 3.9 8.4E-05 46.0 5.6 57 105-165 107-163 (542)
41 COG1640 MalQ 4-alpha-glucanotr 76.4 0.42 9.1E-06 53.2 -2.2 93 299-397 70-177 (520)
42 PLN02784 alpha-amylase 76.0 37 0.00081 40.5 13.1 25 282-306 566-590 (894)
43 PRK12568 glycogen branching en 74.0 6.9 0.00015 45.7 6.6 60 104-166 264-323 (730)
44 TIGR02401 trehalose_TreY malto 71.9 9.9 0.00022 44.9 7.3 30 105-135 12-41 (825)
45 COG0708 XthA Exonuclease III [ 69.6 2.7 5.8E-05 43.1 1.8 81 296-387 141-226 (261)
46 PRK10933 trehalose-6-phosphate 68.4 60 0.0013 36.7 12.3 28 284-313 81-108 (551)
47 COG0366 AmyA Glycosidases [Car 64.0 11 0.00024 40.6 5.3 60 102-166 22-81 (505)
48 PF14701 hDGE_amylase: glucano 54.7 16 0.00035 40.0 4.5 54 103-161 16-69 (423)
49 COG0296 GlgB 1,4-alpha-glucan 52.4 24 0.00051 40.7 5.5 50 105-156 161-213 (628)
50 cd06592 GH31_glucosidase_KIAA1 48.2 43 0.00093 34.7 6.3 84 287-383 73-162 (303)
51 KOG0471 Alpha-amylase [Carbohy 45.3 58 0.0012 36.9 7.2 109 280-391 84-221 (545)
52 PF00479 G6PD_N: Glucose-6-pho 43.0 8 0.00017 37.4 0.0 22 366-387 156-177 (183)
53 PRK09505 malS alpha-amylase; R 42.9 81 0.0018 36.8 8.0 94 283-385 291-463 (683)
54 smart00545 JmjN Small domain f 42.6 33 0.00071 25.6 3.2 33 350-382 2-34 (42)
55 COG0296 GlgB 1,4-alpha-glucan 40.8 80 0.0017 36.5 7.4 93 285-389 215-309 (628)
56 cd06563 GH20_chitobiase-like T 40.6 89 0.0019 33.2 7.4 82 280-378 82-165 (357)
57 COG2904 Uncharacterized protei 40.2 8 0.00017 35.5 -0.5 44 288-335 31-75 (137)
58 KOG3625 Alpha amylase [Carbohy 39.1 46 0.001 39.9 5.2 108 352-486 511-638 (1521)
59 PF14784 ECIST_Cterm: C-termin 38.4 21 0.00045 32.9 1.9 22 473-494 88-109 (126)
60 TIGR01531 glyc_debranch glycog 38.4 56 0.0012 41.0 6.0 62 93-159 112-177 (1464)
61 TIGR02401 trehalose_TreY malto 37.4 60 0.0013 38.6 5.9 12 473-484 508-519 (825)
62 PF02375 JmjN: jmjN domain; I 37.3 27 0.00058 24.9 1.9 32 351-382 1-32 (34)
63 cd06568 GH20_SpHex_like A subg 35.8 1E+02 0.0023 32.4 7.0 83 280-379 71-155 (329)
64 TIGR01531 glyc_debranch glycog 34.8 47 0.001 41.6 4.6 55 352-432 489-543 (1464)
65 cd06602 GH31_MGAM_SI_GAA This 32.2 1.3E+02 0.0028 31.8 7.0 73 287-376 69-153 (339)
66 smart00642 Aamy Alpha-amylase 32.1 48 0.001 31.4 3.4 23 284-306 70-92 (166)
67 PRK14511 maltooligosyl trehalo 30.8 90 0.002 37.5 6.0 56 106-165 17-72 (879)
68 cd02742 GH20_hexosaminidase Be 29.9 1.4E+02 0.003 30.9 6.7 78 280-379 68-149 (303)
69 TIGR02100 glgX_debranch glycog 29.7 60 0.0013 37.9 4.2 56 104-159 177-239 (688)
70 PRK09441 cytoplasmic alpha-amy 29.1 1.3E+02 0.0027 33.3 6.5 14 296-309 225-239 (479)
71 COG1523 PulA Type II secretory 28.3 40 0.00087 39.4 2.5 55 106-161 195-257 (697)
72 COG3129 Predicted SAM-dependen 28.0 26 0.00056 35.9 0.8 74 348-440 16-93 (292)
73 PRK03705 glycogen debranching 27.5 57 0.0012 37.9 3.6 55 106-160 174-235 (658)
74 cd06597 GH31_transferase_CtsY 26.9 1.5E+02 0.0032 31.4 6.3 79 287-383 88-184 (340)
75 cd06570 GH20_chitobiase-like_1 26.6 1.4E+02 0.003 31.3 6.0 100 280-410 64-167 (311)
76 TIGR02768 TraA_Ti Ti-type conj 25.6 1.7E+02 0.0037 34.4 7.1 27 364-390 178-209 (744)
77 PRK13840 sucrose phosphorylase 25.3 1.4E+02 0.003 33.6 6.0 62 101-167 12-74 (495)
78 TIGR02104 pulA_typeI pullulana 24.3 64 0.0014 36.8 3.2 54 105-158 149-217 (605)
79 cd06565 GH20_GcnA-like Glycosy 23.9 1.9E+02 0.0041 30.0 6.4 78 282-382 58-135 (301)
80 cd06591 GH31_xylosidase_XylS X 23.9 2.1E+02 0.0045 29.9 6.7 83 290-399 72-160 (319)
81 PRK12853 glucose-6-phosphate 1 23.0 34 0.00074 38.2 0.7 24 364-387 155-178 (482)
82 KOG2472 Phenylalanyl-tRNA synt 22.4 26 0.00056 39.2 -0.4 19 473-491 155-173 (578)
83 PF01055 Glyco_hydro_31: Glyco 22.2 81 0.0018 34.1 3.4 79 286-376 85-168 (441)
84 COG0160 GabT 4-aminobutyrate a 22.2 90 0.002 34.6 3.7 107 286-395 245-380 (447)
85 TIGR02102 pullulan_Gpos pullul 22.1 1.2E+02 0.0026 37.5 5.0 30 104-134 475-504 (1111)
86 PRK05722 glucose-6-phosphate 1 21.8 37 0.00081 38.0 0.7 24 364-387 165-188 (495)
87 TIGR03852 sucrose_gtfA sucrose 21.8 1.5E+02 0.0033 33.0 5.4 54 106-166 14-68 (470)
88 TIGR00871 zwf glucose-6-phosph 21.5 39 0.00084 37.8 0.7 24 364-387 156-179 (482)
89 cd06599 GH31_glycosidase_Aec37 20.5 2.2E+02 0.0047 29.7 6.0 75 290-375 79-155 (317)
No 1
>PLN02635 disproportionating enzyme
Probab=100.00 E-value=8.1e-137 Score=1111.84 Aligned_cols=452 Identities=73% Similarity=1.245 Sum_probs=422.3
Q ss_pred CCCCCCCccccccCCCCCCCceeEEEEecCccCCCCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCC
Q 009906 68 GQDLPDDYEEWTPKPDPRDRRRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYS 147 (522)
Q Consensus 68 p~~Lp~gyh~l~~~~~~~~~r~~Gi~~~l~SLr~~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYs 147 (522)
..++|.-++...+. ...+.|.+||++|+||||++||||||||+|++||||++++|+++||||||||+++..+.++|||+
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~R~~Gvll~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs 87 (538)
T PLN02635 9 GEDLPPDYEDWLPK-RDAARRRAGILLHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYS 87 (538)
T ss_pred cccCCccccccCCc-ccCCCcceEEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcc
Confidence 34666666666554 23367999999999999999999999999999999999999999999999999987788999999
Q ss_pred ccccccccccccChhhhhhhcCCCcccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcCCCCchh
Q 009906 148 GQDANCGNTLLISLEELVKDGLLAKAELPQPIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSW 227 (522)
Q Consensus 148 p~Sr~alNPlYI~le~l~e~~~l~~~~l~~~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~w 227 (522)
|+||||+||+|||++.|++.++++.+++....+.+.|||+.|+..|.++|+++|++|......++.+|++||+++|.+.|
T Consensus 88 ~~S~fa~NPlyI~le~L~e~g~l~~~~l~~~~~~~~VDY~~v~~~K~~~L~~a~~~f~~~~~~~~~~F~~F~~~~g~~~W 167 (538)
T PLN02635 88 GQDANCGNTLLISLEELVKDGLLEEDELPEPVPVGKVDFSAVAELKDPLIAKAAERLLLSDGELKEELEDFRKDPEISSW 167 (538)
T ss_pred cccccccChhhcCHHhhhcccccChhhHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhCCCcch
Confidence 99999999999999999999999988776555578999999999999999999999865433456799999988332689
Q ss_pred hHHhHHHHHHHhhcCCCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeecccc
Q 009906 228 LEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIY 307 (522)
Q Consensus 228 L~~yA~f~aL~~~~~~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L~gDLpvg 307 (522)
|++||+||||++++++.+|++||+++++++++++++++++++++|+||+|+||+|++||+++|+||+++||.||||||||
T Consensus 168 L~dyAlF~aLk~~~~~~~W~~WPe~~~~~~~~al~~~~~~~~~~i~f~~~lQ~~~~~Qw~~l~~yA~~~Gi~L~gDlpi~ 247 (538)
T PLN02635 168 LEDAALFAAIDNTLNAKAWWDWPEPLRDRHPAALEAIRQSHKDFIDEFIAQQFLFQRQWQAVRSYANEKGISIIGDMPIY 247 (538)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCHhhccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccc
Q 009906 308 VGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRG 387 (522)
Q Consensus 308 V~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lG 387 (522)
|++||||||+||++|++|++|.|++++|||||+||++|||||+|+|||++|+++||+||++|||++|++||+||||||||
T Consensus 248 Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~Rlr~~~~~~d~lRIDHf~G 327 (538)
T PLN02635 248 VGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMAKDGYSWWAGRMRRALELYDEFRIDHFRG 327 (538)
T ss_pred cCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeCCCCCCCCCceeeCChHHHHHHHHHHcCCceEEecccCCCCHHHHHHHHHhCCCCceEeeeccCCCCCCCCC
Q 009906 388 FAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHL 467 (522)
Q Consensus 388 lfRlW~IP~g~~ta~~G~yv~~p~~~ll~ale~~r~~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~~~~~~~~~ 467 (522)
|+||||||+|++||.+|+||+||+++||.+|++++++|+||||||||||++|+++|+++|+||||||||||++++.++++
T Consensus 328 f~r~W~IP~g~~ta~~G~wv~~Pg~~l~~~l~~~~~~~~vIaEDLG~I~~~V~~l~~~~g~pGmkVl~F~f~~~~~~~~~ 407 (538)
T PLN02635 328 FAGYWAVPADAKTAMNGRWKVGPGKSFFDAIKKAVGKIDIIAEDLGVITEDVVELRKAIGAPGMAVLQFAFGGDADNPHL 407 (538)
T ss_pred hheeeeccCCCCCCCCCeeeeCCHHHHHHHHHHHcCCCCEEEeeCCCCCHHHHHHHHHcCCCCCEEEEeeecCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877667899
Q ss_pred CCCCCCCcEEecCcCchhhHHHHHHcCchhHHHHHHHHHhcCCC-cccccccccc
Q 009906 468 PHNHERNQVVYTGTHDNDTVKILYYAVLIHLFKISLIRQKNKGK-YHIIWSIISQ 521 (522)
Q Consensus 468 P~~~~~~~va~~~THD~ptl~Gww~~~d~~~~~~~~~~y~~~~~-~~~~~~~~~~ 521 (522)
|++|+++||+|||||||||++|||++.|++.+ +.+.+||+... +++.|+||+.
T Consensus 408 P~~y~~~~v~ytgTHD~~Tl~GW~~~~d~~~r-~~~~~yl~~~~~~~~~~~li~~ 461 (538)
T PLN02635 408 PHNHEENQVVYPGTHDNDTVVGWWDKLDEEEK-SKVRKYLGIADEDDIAWELIRA 461 (538)
T ss_pred cccccccceeeecCCCcccHHHHHhcCCHHHH-HHHHHHhCCCCccchhHHHHHH
Confidence 99999999999999999999999999988864 47999998764 8899999974
No 2
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=1.6e-132 Score=1107.71 Aligned_cols=462 Identities=23% Similarity=0.328 Sum_probs=418.9
Q ss_pred cccCCCeeeecCCCccCCCC----CCCeeEeecCcc-------cccccccCCCCCCCcccccc-----------------
Q 009906 29 ATLRPRFFLCTPFAAKTSAA----SASCSSVSGNAA-------ASAVASVGQDLPDDYEEWTP----------------- 80 (522)
Q Consensus 29 ~~~~p~~~~~~~~~~~~~~~----~~~~~~~~g~~~-------~~~~~~~p~~Lp~gyh~l~~----------------- 80 (522)
..+||+..+++-|.+..+++ +..|+|+.+.+. +++++.||.+||+|||+|+.
T Consensus 51 ~~~lpp~~v~~~g~~~~~~~~~~~~~~~~l~~E~g~~~~g~~~~~~~~~lp~~lp~Gyh~L~~~~~~~~~~~~livaP~~ 130 (695)
T PRK11052 51 VTPLPPVKVFTQGKPMQLPLEGSGEYSWQLTTEEGEQLQGRVTGGKALTLPADLPLGYHTLTLTQDDQRWHCRIIVAPKR 130 (695)
T ss_pred hCcCCCeEEEECCCeeEEeecCCCceEEEEEeCCCceEeeeecccccccCCCCCCCeeEEEEEEcCCceEEEEEEEeCCc
Confidence 47999999999999877653 346999866553 34457899999999999974
Q ss_pred --CCCCC--CCceeEEEEecCccCC--CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccc
Q 009906 81 --KPDPR--DRRRAGVLLHPTSFRG--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCG 154 (522)
Q Consensus 81 --~~~~~--~~r~~Gi~~~l~SLr~--~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~al 154 (522)
.|+.. .+|.|||++|+||||| +||||||+|+ ++|++|++++|++||||||||++.|..|.++|||+|+||||+
T Consensus 131 ~~~p~~~~~~~r~wGv~~qlySLrs~~~~GIGDfgdl-~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~al 209 (695)
T PRK11052 131 CYEPQALLQGKKLWGACVQLYTLRSEHNWGIGDFGDL-KQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWL 209 (695)
T ss_pred cCCchhhccCCCceEEEeccccCCCCCCCCeecHHHH-HHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCccccccccc
Confidence 12221 2578999999999998 9999999995 699999999999999999999999989999999999999999
Q ss_pred cccccChhhhhhhcCCCc-------cc----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc--chhhHHHHHHHhcC
Q 009906 155 NTLLISLEELVKDGLLAK-------AE----LPQPIDAERVNFAAVADLKDPLIAKAAERLIQS--DGELKSQLENFHKD 221 (522)
Q Consensus 155 NPlYI~le~l~e~~~l~~-------~~----l~~~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~--~~~~~~~f~~F~~~ 221 (522)
||||||++.|+|+....+ .+ +....+.+.|||+.|+++|+++|+++|++|... ...++.+|++|+++
T Consensus 210 NPlyI~~e~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~VDy~~v~~~K~~~L~~af~~f~~~~~~~~~~~~f~~F~~~ 289 (695)
T PRK11052 210 NVIYIDVNAVEDFQQSEEAQAWWQSAETQQRLQQARAAEWVDYSTVTALKLTALRLAFKQFAQRDKDDEQMQAFRQFVAE 289 (695)
T ss_pred ChHHcCHHHHhhhhhhhhhhhhhcchhHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHHHh
Confidence 999999999999654322 12 222334678999999999999999999998653 23456789999998
Q ss_pred CCCchhhHHhHHHHHHHhhcCCC-----CCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 009906 222 PSISSWLEDAAYFAAIDDSLNTF-----SWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMK 296 (522)
Q Consensus 222 ~g~~~wL~~yA~f~aL~~~~~~~-----~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~ 296 (522)
+++||++||+||||++++++. +|++||+++++++++++++++++++++|+||+|+||+|++||+++|+||+++
T Consensus 290 --~g~wL~~yA~F~AL~~~~~~~~~~~~~W~~WP~~~~~~~~~a~~~~~~~~~~~v~f~~~lQ~~~~~Ql~~~~~~A~~~ 367 (695)
T PRK11052 290 --GGESLLWQAAFDALHAHLVKEDEMRWGWPVWPEEYQDVDSPAVQQFCEEHADEVDFYLWLQWLADSQFAACWQLSQQL 367 (695)
T ss_pred --CchHHHHHHHHHHHHHHhcCCCCCCCCccCCCHhhccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 579999999999999988755 8999999999999999999999999999999999999999999999999999
Q ss_pred CC--eEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHh
Q 009906 297 GI--SIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRAR 374 (522)
Q Consensus 297 Gi--~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~ 374 (522)
|| +|||||||||+++|||||++|++|+++ +++|||||+||++|||||+|+|||++|+++||+|||+|||++|
T Consensus 368 Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~------~~~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~ 441 (695)
T PRK11052 368 GMPIGLYRDLAVGVAEGGAETWCDRELYCLK------ASVGAPPDILGPLGQNWGLPPMDPHVLQARAYQPFIDLLRANM 441 (695)
T ss_pred CCceeEEEeeeceECCCcHHHhCCHHHhcCC------CcCCCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHH
Confidence 98 899999999999999999999999998 4899999999999999999999999999999999999999999
Q ss_pred hhcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHHH--HHHHHcCCceEEecccCCCCHHHHHHHHHhCCCCce
Q 009906 375 DLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFD--AIFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMA 452 (522)
Q Consensus 375 ~~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll~--ale~~r~~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~ 452 (522)
++||+|||||||||+||||||+|+ +|.+|+||+||+++||. +||++|++|+||||||||||++|+++|+++||+||+
T Consensus 442 ~~~g~lRIDH~~Gl~rlW~IP~g~-~a~~G~yv~~P~~~ll~~lales~~~~~~vIgEDLG~Vp~~Vr~~l~~~gi~g~~ 520 (695)
T PRK11052 442 QHCGALRIDHVMSLLRLWWIPYGE-TADQGAYVHYPVDDLLAILALESQRHRCMVIGEDLGTVPVEIVGKLRDSGVYSYK 520 (695)
T ss_pred HhCCEEEecchhhhheeeecCCCC-CCCCCeeEeCCHHHHHHHHHHHHhcCCCCEEEeeCCCCCHHHHHHHHHcCCCCcE
Confidence 999999999999999999999998 79999999999999997 569999999999999999999999999999999999
Q ss_pred EeeeccCCCCCCCCCCCCCCCCcEEecCcCchhhHHHHHHcCchhHHHH
Q 009906 453 VLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDTVKILYYAVLIHLFKI 501 (522)
Q Consensus 453 Vl~Fe~~~~~~~~~~P~~~~~~~va~~~THD~ptl~Gww~~~d~~~~~~ 501 (522)
|||||++++ .++++|++|+++||+|||||||||++|||++.|+++|++
T Consensus 521 Vl~Fe~~~~-~~~~~P~~y~~~sva~t~THD~pTl~Gww~~~di~lr~~ 568 (695)
T PRK11052 521 VLYFENDEE-GGFRAPAAYPEQSMATLTTHDLPTLRGYWQCDDLTLGKE 568 (695)
T ss_pred EEEecccCC-CCCCCcccCcCCeEEECCCCCChhHHHHHhcCchHHHHH
Confidence 999999876 458999999999999999999999999999999998754
No 3
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=7.5e-130 Score=1054.97 Aligned_cols=428 Identities=48% Similarity=0.883 Sum_probs=400.9
Q ss_pred CCceeEEEEecCccCCCCCCccch-HHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhh
Q 009906 86 DRRRAGVLLHPTSFRGPYGIGDFG-AEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (522)
Q Consensus 86 ~~r~~Gi~~~l~SLr~~~GIGDfg-dla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l 164 (522)
.+|.|||++|+|||+++||||||| |+ ++||||++++|+++|||||||+++ .+.|||+|+||||+||+||||+.|
T Consensus 3 ~~R~~Gv~~~l~SL~~~~GiGDfg~dl-~~~id~~~~~G~~~~qilPl~~~~----~~~SPY~~~S~~alnplyI~l~~l 77 (497)
T PRK14508 3 MKRKSGILLHITSLPGSYGIGDFGKGA-YEFIDFLAEAGQSYWQILPLGPTG----YGDSPYQSFSAFAGNPLLIDLEAL 77 (497)
T ss_pred CCCceEEEeccccCCCCCCCcchHHHH-HHHHHHHHHcCCCEEEEcCCCCCC----CCCCCcCcccccccChhhcChhhc
Confidence 468999999999999999999999 75 799999999999999999999986 689999999999999999999999
Q ss_pred hhhcCCCcccCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcCCCCchhhHHhHHHHHHHhhc
Q 009906 165 VKDGLLAKAELPQ---PIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSL 241 (522)
Q Consensus 165 ~e~~~l~~~~l~~---~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~ 241 (522)
+++++++++++.. ....+.|||+.|+.+|.++|+++|++|..+...++.+|++|+++ +++||++||+||+|++++
T Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~vdy~~v~~~K~~~L~~af~~f~~~~~~~~~~f~~F~~~--~~~wL~~yA~F~al~~~~ 155 (497)
T PRK14508 78 VDDGLLDESDLEGLPFGSNPERVDYDLVREAKRPLLRKAFERFLRASLERAEAFEAFCEE--EAYWLDDYALFMALKEHF 155 (497)
T ss_pred cccccCCHHHHhhhhhccCccccchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHh--CccHHHHHHHHHHHHHHh
Confidence 9999998777654 33467899999999999999999999863333456799999998 589999999999999999
Q ss_pred CCCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhccccc
Q 009906 242 NTFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKH 321 (522)
Q Consensus 242 ~~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~ 321 (522)
++.+|++||+++++++++++++++++|+++|+||+|+||+|++||+++|+||+++||+|||||||||++||||||++|++
T Consensus 156 ~~~~W~~WP~~~~~~~~~~~~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~l 235 (497)
T PRK14508 156 GGLPWNEWPEPLRKRDPEALAKAREELADEILYHKFLQYLFFRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPEL 235 (497)
T ss_pred CCCCcCCCCHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCCCC
Q 009906 322 FLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVA 401 (522)
Q Consensus 322 F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ta 401 (522)
|+++++|.|+.++|||||+||++|||||+|+|||++|+++||+|||+|||++|++||++||||||||+||||||+|+++|
T Consensus 236 F~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~~~lRIDH~~Gf~r~W~IP~~~~~a 315 (497)
T PRK14508 236 FKLDEDGKPTVVAGVPPDYFSETGQLWGNPVYNWDALRKDGYRWWIERLRRSFKLYDIVRIDHFRGFEAYWEIPAGEKTA 315 (497)
T ss_pred hcCCCCCCcceeeeCCCCCCCcccCcCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeCChHHHHHHHHHHcCCceEEecccCCCCHHHHHHHHHhCCCCceEeeeccCCCCCCCCCCCCCCCCcEEecCc
Q 009906 402 MDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGT 481 (522)
Q Consensus 402 ~~G~yv~~p~~~ll~ale~~r~~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~~~~~~~~~P~~~~~~~va~~~T 481 (522)
.+|+||+||+++||.+|..+.++|+||||||||||++|+++|+++||+||+||+||++++++++++|++|+++||+||||
T Consensus 316 ~~G~~v~~p~~~l~~~l~~e~~~~~vigEDLG~vp~~V~~~l~~~gi~g~~Vl~f~~~~~~~~~~~p~~~~~~~v~~~~T 395 (497)
T PRK14508 316 INGRWVPGPGKDLFEAVKEELGDLPIIAEDLGVITPDVEELRDRFGFPGMKILQFAFDGDSDNPYLPHNYPRNSVVYTGT 395 (497)
T ss_pred CCCeeecCCHHHHHHHHHHHhCCCCEEEeECCCCCHHHHHHHHHcCCCccEEEEecCCCCCCCCCCCcCCCCCeEEECCC
Confidence 99999999999999999888899999999999999999999999999999999999986555678999999999999999
Q ss_pred CchhhHHHHHHcCchhHHHHHHHHHhcC-CCcccccccccc
Q 009906 482 HDNDTVKILYYAVLIHLFKISLIRQKNK-GKYHIIWSIISQ 521 (522)
Q Consensus 482 HD~ptl~Gww~~~d~~~~~~~~~~y~~~-~~~~~~~~~~~~ 521 (522)
|||||++|||++.|++.+ +.+.+||+. ...++.|.||+.
T Consensus 396 HD~~Tl~gWw~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ 435 (497)
T PRK14508 396 HDNDTTVGWWESLDPEER-KRVADYLGRSSEEEIHWALIRL 435 (497)
T ss_pred CCCHHHHHHHhCCCHHHH-HHHHHHhccCCchhHHHHHHHH
Confidence 999999999999988754 479999986 346778877753
No 4
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=100.00 E-value=1.4e-126 Score=1032.16 Aligned_cols=430 Identities=35% Similarity=0.650 Sum_probs=397.9
Q ss_pred CCceeEEEEecCccCCCCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhh
Q 009906 86 DRRRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (522)
Q Consensus 86 ~~r~~Gi~~~l~SLr~~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~ 165 (522)
.+|.|||++|+|||||.||||||||+|+.|++++++.|+.+|||+||++++ +.++|||+|+||||+||+||||+.|+
T Consensus 12 ~~R~~Gvll~l~SL~s~~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~---~~~ssPYs~~S~~a~NplyI~le~l~ 88 (513)
T TIGR00217 12 LKRKSGILLQLYSLPSEWGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPAD---FTRSPPYSISSARALNVYYIDLEALD 88 (513)
T ss_pred CCCceEEEeccccCCCCCCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCC---CCCCCCcCchhcccccHHhcChhhcc
Confidence 468999999999999999999999999999999999999999999999985 46778899999999999999999999
Q ss_pred hhcCCCcccCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHhcCCCCchhhHHhHHHHHHHhhcC
Q 009906 166 KDGLLAKAELPQ--PIDAERVNFAAVADLKDPLIAKAAERLIQS-DGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLN 242 (522)
Q Consensus 166 e~~~l~~~~l~~--~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~-~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~~ 242 (522)
|++++++.++.. ....+.|||+.|+.+|+++|+++|++|... ...+..+|++||++ ++.||++||+||||+++++
T Consensus 89 e~~~l~~~~~~~~~~~~~~~VDy~~v~~~K~~~L~~a~~~f~~~~~~~~~~~f~~F~~~--~~~wL~dya~f~al~~~~~ 166 (513)
T TIGR00217 89 EFIDLPLSLLKEAELRESDRVDYSKKIALKDTALKEAFLNFINRASADEVRSFAEFKKK--QSDWLADFASFVAQKEAFF 166 (513)
T ss_pred ccccCChhHHhhhhhcCCCcccHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHh--ChhHHHHHHHHHHHHHHhC
Confidence 999988765432 245678999999999999999999999654 23456799999998 5789999999999999887
Q ss_pred ----CCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhcc
Q 009906 243 ----TFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWAN 318 (522)
Q Consensus 243 ----~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~ 318 (522)
+.+|++||+++++++++++++++++++++|+||+|+||+|++||+++|+||+++||+|||||||||++||||||+|
T Consensus 167 ~~~~~~~W~~WP~~~~~~~~~a~~~~~~~~~~ei~f~~~lQ~~~~~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~ 246 (513)
T TIGR00217 167 KESKNAGWVLWDKGIQKRNEPELFKLRNILSKEIKFQEWLQWLFFSQFQALKRYANDMGIGLYGDLPVFVAYDSADVWAD 246 (513)
T ss_pred CCCCCCCcCCCCHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccC-CCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCC
Q 009906 319 KKHFLLNRR-GFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSE 397 (522)
Q Consensus 319 ~~~F~~~~~-g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g 397 (522)
|++|++|++ |+|+ +.|+|||+||++|||||+|+|||++|+++||+||++|||++|++||+|||||||||+||||||+|
T Consensus 247 ~~~F~l~~~~GaP~-~agvpPd~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~d~lRIDHf~Gf~r~w~IP~g 325 (513)
T TIGR00217 247 PELFCLRASAGAPK-PAGLGPDYFLEQGQNWGLPPYDWNVLKARGYEWWIKRLGANMQYADILRIDHFRGFVSLWWVPAG 325 (513)
T ss_pred HHHhCCCcccCCCC-CCCCCCCcccccCCCCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCC
Confidence 999999988 9999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeCChHHHHHHHHHHcCC-ceEEecccCCCCHHHHHHHHHhCCCCceEeeeccCCCCCCCCCCCCCCCCcE
Q 009906 398 AKVAMDGRWKVGPGKSLFDAIFRSVGN-INIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQV 476 (522)
Q Consensus 398 ~~ta~~G~yv~~p~~~ll~ale~~r~~-~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~~~~~~~~~P~~~~~~~v 476 (522)
++||.+|+||+||+++||.+|..+.++ |+||||||||||++|+++|+++|||||||||||+++++.+.++||+|+++||
T Consensus 326 ~~ta~~G~wv~~Pg~~l~~~l~~e~~~~~~vIaEDLG~v~~~Vr~ll~~~gipGmkVl~Fe~~~~~~~~~~P~~y~~~~v 405 (513)
T TIGR00217 326 ESTAFNGAWVHYPGDDFFNILANESKDNLKIIGEDLGTVPEEVSRLRDEFNFPGMKVLYFAFDFDSSNRNLPHNYPKNAI 405 (513)
T ss_pred CCCCCCCeeEeCCHHHHHHHHHHHcCCCCcEEeeeCCCCCHHHHHHHHHcCCCCceEeEecccCCCCCCCCcccCCcCcE
Confidence 989999999999999999877776666 9999999999999999999999999999999999877666667999999999
Q ss_pred EecCcCchhhHHHHHHcCch-hHHHHHHHHHhcCCC-cccccccccc
Q 009906 477 VYTGTHDNDTVKILYYAVLI-HLFKISLIRQKNKGK-YHIIWSIISQ 521 (522)
Q Consensus 477 a~~~THD~ptl~Gww~~~d~-~~~~~~~~~y~~~~~-~~~~~~~~~~ 521 (522)
||||||||+|+.|||.+.+. +..++.+.+|++... ..+.|.+|+.
T Consensus 406 ~ytgTHD~dt~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (513)
T TIGR00217 406 VYTGTHDNDLTLGEFLGISLDDYQKRYILHYLNCLPNFYVHWALIRS 452 (513)
T ss_pred EEecCCcchhHHHHHhcCCCchHHHHHHHHHcCCCCCcchHHHHHHH
Confidence 99999999999999998751 345557889988754 6788888763
No 5
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=100.00 E-value=8.4e-125 Score=1105.24 Aligned_cols=461 Identities=21% Similarity=0.287 Sum_probs=413.6
Q ss_pred ccCCCeeeecC---CCccCCCC-----CCCeeEeecCccc---cc---------------ccccCCCCCCCcccccc---
Q 009906 30 TLRPRFFLCTP---FAAKTSAA-----SASCSSVSGNAAA---SA---------------VASVGQDLPDDYEEWTP--- 80 (522)
Q Consensus 30 ~~~p~~~~~~~---~~~~~~~~-----~~~~~~~~g~~~~---~~---------------~~~~p~~Lp~gyh~l~~--- 80 (522)
.+||+..+|+. |....+++ +..|+|+.+.+.. +. ...||.+||+|||+|+.
T Consensus 66 ~~LPp~~v~~~~~~g~~~~l~~~~~~~~~~~~l~~E~G~~~~g~~~~~~~~~~~~~~~~~~~~Lp~~Lp~GYH~L~l~~~ 145 (1693)
T PRK14507 66 GVLPPLLVVEAWAPRRALRVPVRVTGGALRWRLVDEHGTEREGRATPAALEEGAGFDLPRTLVLAIPLTPGYHRLTVTVG 145 (1693)
T ss_pred cCCCCeEEEEecCCCcceEEeeccCCCceeEEEEeCCCCeEEeeecccccccccccccCcccccCCCCCCeeEEEEEecC
Confidence 58999999998 55544432 3469998666642 11 12388999999999974
Q ss_pred ----------CC------CCC--CCceeEEEEecCccCC--CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCC
Q 009906 81 ----------KP------DPR--DRRRAGVLLHPTSFRG--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKAN 140 (522)
Q Consensus 81 ----------~~------~~~--~~r~~Gi~~~l~SLr~--~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~ 140 (522)
.| ... ..|.|||++|+||||| +||||||+|+ ++|++|++++|++||||||||+++|..|
T Consensus 146 ~~~~~~~LivaP~r~~~~~~l~~~~r~wG~~~qLYsLRS~~~~GIGDfgdL-~~~~d~la~~Ga~~lqlnPLhA~~p~~p 224 (1693)
T PRK14507 146 DLRAEAWVIAAPQRCWRPPALAEGARDWGLAAQLYGLRSARNWGIGDFGDL-GRLVRDAALRGASFLGLSPLHALFPTDP 224 (1693)
T ss_pred CCceEEEEEEeCcccCChhhhccCCcceEEEeeeeeeeeCCCCCcccHHHH-HHHHHHHHHcCCCEEEEcCCCCCCCCCC
Confidence 12 111 3578999999999996 8999999995 6999999999999999999999998888
Q ss_pred CCCCCCCccccccccccccChhhhhhhcCCCccc-------C----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcc-
Q 009906 141 EEGSPYSGQDANCGNTLLISLEELVKDGLLAKAE-------L----PQPIDAERVNFAAVADLKDPLIAKAAERLIQSD- 208 (522)
Q Consensus 141 ~~~SPYsp~Sr~alNPlYI~le~l~e~~~l~~~~-------l----~~~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~~- 208 (522)
.++|||+|+||||+||+|||++.|++++.+++.+ + ..+...+.|||+.|+++|.++|+++|++|....
T Consensus 225 ~~~SPYsp~Sr~alNPlYIdle~l~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~VDY~~V~~~K~~~Lr~af~~f~~~~~ 304 (1693)
T PRK14507 225 AKASPYSPSSRLFLNTLYIDVEAVPDFAECEAARLLVHAPEFQARLEALRAAELVDYAGVAEAKFEVLEALWRHFRARHL 304 (1693)
T ss_pred CCCCCcCcccccccChHhcCHhhccccccchhhhhhhcchhhhHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999887665322 1 122346789999999999999999999986431
Q ss_pred ---hhhHHHHHHHhcCCCCchhhHHhHHHHHHHhhcCCC-----CCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHH
Q 009906 209 ---GELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTF-----SWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQF 280 (522)
Q Consensus 209 ---~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~~~~-----~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQw 280 (522)
..++.+|++||++ +++||++||+||||++++++. +|++||+++++++++++++++++|+++|+||+|+||
T Consensus 305 ~~~~~~~~~F~~F~~~--~g~wL~dyAlF~AL~e~~~~~~~~~w~W~~WPe~~r~~~~~av~~~~~~~~~~v~F~~flQw 382 (1693)
T PRK14507 305 ERNTGRDAGFRAFRAE--GGESLRSHALFEALQEHFRAEDAHWWGWPDWPEAYRDPGTPAVRAFAEEHAERVEYHEYLQW 382 (1693)
T ss_pred cccchhHHHHHHHHHh--cchHHHHHHHHHHHHHHhcCCCCCCCCccCCChhhccCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2456789999998 589999999999999988765 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC--CeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHH
Q 009906 281 LFQRQWQKVRNYAQMKG--ISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAM 358 (522)
Q Consensus 281 l~~~Ql~~~~~~A~~~G--i~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l 358 (522)
+|++||+++|+||+++| |+|||||||||+++|||||++|++|++| +++|||||+||++|||||+|+|||++|
T Consensus 383 la~~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~------~~aGAPPD~Fs~~GQ~WG~P~y~p~~L 456 (1693)
T PRK14507 383 LADLQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANG------ASIGAPPDELNPKGQDWGLPPFDPLEL 456 (1693)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcC------CccCCCCCcCccccccCCCcCcCHHHH
Confidence 99999999999999999 6999999999999999999999999998 599999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHHHH--HHHHcCCceEEecccCCCC
Q 009906 359 EKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDA--IFRSVGNINIIAEDLGVIT 436 (522)
Q Consensus 359 ~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll~a--le~~r~~~~vIgEDLG~Vp 436 (522)
+++||+|||+|||++|++||+|||||||||+||||||+|+ +|.+|+||+||+++||.+ ||++|++|+||||||||||
T Consensus 457 ~~~gY~ww~~rlr~~m~~~g~lRIDH~lGl~RlW~IP~g~-ta~~G~yv~yP~~~ll~~laLEs~r~~~~VIgEDLGtVp 535 (1693)
T PRK14507 457 ERDGYAPFRALLRANMRHAGALRIDHVMQLMRLFWIPLGR-SAREGAYVAYPFEPMLAVLALESHRNRCLVIGEDLGTVP 535 (1693)
T ss_pred HhcChHHHHHHHHHHHHHCCEEEeccHHhhhHhcccCCCC-CCCCCeEEECCHHHHHHHHHHHHhcCCCeEEEecCCCCC
Confidence 9999999999999999999999999999999999999998 699999999999999964 5899999999999999999
Q ss_pred HHHHHHHHHhCCCCceEeeeccCCCCCCCCCCCCCCCCcEEecCcCchhhHHHHHHcCchhHHHH
Q 009906 437 EDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDTVKILYYAVLIHLFKI 501 (522)
Q Consensus 437 ~~Vr~~l~~~g~~G~~Vl~Fe~~~~~~~~~~P~~~~~~~va~~~THD~ptl~Gww~~~d~~~~~~ 501 (522)
++|+++|+++||+||||||||+++++ ++++|++|+++||+|||||||||++|||++.|++++++
T Consensus 536 ~~Vr~~l~~~gi~Gm~VL~Fe~~~~~-~~~~P~~y~~~sva~tgTHD~pTl~Gww~g~d~~lR~~ 599 (1693)
T PRK14507 536 EGFRDALARAGVLSYRILYFEREDGG-AFKPPAAYPADALAAVTTHDLPTLVGWWRGVDTDLRQS 599 (1693)
T ss_pred HHHHHHHHHcCCCCceEEEeeecCCC-CCCCcccCcCCeEEECCCCCCHhHHHHHhCCCHHHHHH
Confidence 99999999999999999999998765 68999999999999999999999999999999998754
No 6
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=100.00 E-value=4.8e-123 Score=1004.75 Aligned_cols=415 Identities=42% Similarity=0.751 Sum_probs=335.9
Q ss_pred EecCccCC--CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhhhhcCCC
Q 009906 94 LHPTSFRG--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVKDGLLA 171 (522)
Q Consensus 94 ~~l~SLr~--~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~e~~~l~ 171 (522)
||+||||| +|||||||+.+++|+|||+++|+++|||+||+|++ +...|||+|+||||+||+||||+.|+++++++
T Consensus 1 ~~l~SLrs~~~~GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~---~~~~sPY~p~S~~alNPlyI~l~~l~e~~~~~ 77 (496)
T PF02446_consen 1 VPLYSLRSPRSWGIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTG---PGNSSPYSPSSRFALNPLYIDLEALPEFGLLD 77 (496)
T ss_dssp --GGGS-SSS--SS--SSHHHHHHHHHHHHCT--EEE----S-B----TTCTTTTSBS-SSS--GGGS-SHHHHHTTSS-
T ss_pred CCCCcCCCCCCCceecHHHHHHHHHHHHHHcCCCeeccccccCCC---CCCCCCCCCCCCCcCChHHcCHHHhhhccccc
Confidence 69999998 46999997667899999999999999999999996 45677999999999999999999999999988
Q ss_pred cc----cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcCCCCchhhHHhHHHHHHHhhcCCCCCC
Q 009906 172 KA----ELPQPIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWY 247 (522)
Q Consensus 172 ~~----~l~~~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~~~~~W~ 247 (522)
+. ++......+.|||+.|+++|.++|+++|++|.... .++.+|++|+++ +++||++||+||+|++.+++.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~VDY~~v~~~K~~~L~~af~~f~~~~-~~~~~f~~F~~~--~~~wL~~yA~f~al~~~~~~~~w~ 154 (496)
T PF02446_consen 78 EAEEIEELAELRDADRVDYEAVAALKRRALRKAFERFKEQA-ERREEFEAFCEQ--NGEWLEDYALFCALKEKFGGAPWR 154 (496)
T ss_dssp ----GGGS-S---SSB--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCTTSSGG
T ss_pred hhhhhhhcccccccccccHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHH--hcchhHhHHHHHHHHHHhCCCCcc
Confidence 44 34445568999999999999999999999998753 467899999987 589999999999999999999999
Q ss_pred CCc-hhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhcccccccccc
Q 009906 248 LWP-ESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNR 326 (522)
Q Consensus 248 ~Wp-~~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~ 326 (522)
+|| +++++++++++++++++|+++|+||+|+||+|++||+++|+||+++||+|||||||||+++|||||++|++|+++
T Consensus 155 ~WP~~~~~~~~~~~l~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~- 233 (496)
T PF02446_consen 155 EWPEEELRDRDSEALAAFREEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLD- 233 (496)
T ss_dssp GS--HHHHTT-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B--
T ss_pred cCCHHHHhhhcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCc-
Confidence 998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCCCCCCCce
Q 009906 327 RGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRW 406 (522)
Q Consensus 327 ~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~y 406 (522)
+++|||||+||++|||||+|+|||++|+++||+|||+|||++|++||++||||||||+||||||+++.+|.+|+|
T Consensus 234 -----~~aGaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl~~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~ 308 (496)
T PF02446_consen 234 -----ASAGAPPDYFSPTGQNWGNPPYNWDALKEDGYRWWIDRLRANMRLFDALRIDHFRGFFRYWWIPAGGETAIDGAW 308 (496)
T ss_dssp -----EEEEE-SSSSSSS-EEEEEE-B-HHHHHHTTTHHHHHHHHHHHCC-SEEEEETGGGGTEEEEEETT-SSSTT-EE
T ss_pred -----CeeCCCCCCCCcccccCCCCCcCHHHHHHcCCHHHHHHHHHHHHhCCchHHHHHHHHHheeEecCCCCCCCCcee
Confidence 699999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred eeCChHHHHHHHHHHcC-CceEEecccCCCCHHHHHHHHHhCCCCceEeeeccCCCCCCCCCCCCCCCCcEEecCcCchh
Q 009906 407 KVGPGKSLFDAIFRSVG-NINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDND 485 (522)
Q Consensus 407 v~~p~~~ll~ale~~r~-~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~~~~~~~~~P~~~~~~~va~~~THD~p 485 (522)
|+||+++||.+|..+.. +|+||||||||||++|+++|+++||+||||++||++.++.+++.|++|+++||+||||||||
T Consensus 309 ~~~p~~~ll~~l~~e~~r~~~vigEDLG~vp~~v~~~l~~~gi~g~~Vl~f~~~~~~~~~~~P~~~~~~sva~~~THD~~ 388 (496)
T PF02446_consen 309 VRYPGEDLLAILALESGRDCLVIGEDLGTVPPEVRELLAELGIPGMRVLQFEFDEDDGNFYLPHNYPENSVAYTGTHDNP 388 (496)
T ss_dssp EE--HHHHHHHHHHHHS-S-EEEE--TSS--HHHHHHHHHTT--EEEEGGGSSSSSTT-TTSGGGSTSSEEEESS-TTS-
T ss_pred ecchHHHHHHHHHHHcCCCCcEEEeecCCCcHHHHHHHHHcCCCceEEEEecCCCCCCCCCCcccCCCccEeeCCCCCCH
Confidence 99999999998888777 99999999999999999999999999999999999766667999999999999999999999
Q ss_pred hHHHHHHcCchhHHHHHHHHHhcC------CCcccccccccc
Q 009906 486 TVKILYYAVLIHLFKISLIRQKNK------GKYHIIWSIISQ 521 (522)
Q Consensus 486 tl~Gww~~~d~~~~~~~~~~y~~~------~~~~~~~~~~~~ 521 (522)
|++|||++.| +.+++.+.+||+. ....+.+.+|++
T Consensus 389 Tl~gww~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 429 (496)
T PF02446_consen 389 TLRGWWEGED-EEERRYLARYLGRLSAPETDEDEIAEALIRQ 429 (496)
T ss_dssp -HHHHHHCS--HHHHHHHHHHHCHTT-SSSSGGGHHHHHHHH
T ss_pred HHHHHHhCCC-HHHHHHHHHHhcCccccCCCCcchhHHHHHH
Confidence 9999999995 5567789999982 247788888764
No 7
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=8.7e-120 Score=1057.58 Aligned_cols=442 Identities=32% Similarity=0.519 Sum_probs=402.2
Q ss_pred ccCCCeeeecCCCccCCCCC---------CCeeEeecCcccccccccCCCCCCCccccccCCCCCCCceeEEEEecCccC
Q 009906 30 TLRPRFFLCTPFAAKTSAAS---------ASCSSVSGNAAASAVASVGQDLPDDYEEWTPKPDPRDRRRAGVLLHPTSFR 100 (522)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~~p~~Lp~gyh~l~~~~~~~~~r~~Gi~~~l~SLr 100 (522)
.++|.+.+++.|.+.+++.. ..|+++.+.+.....- + .+|.|||++|+||||
T Consensus 675 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~~~g~-----~--------------~~r~~Gv~~~l~sLr 735 (1221)
T PRK14510 675 RALPVVMCLYPCTGVDIALVGAAAMVDEALEFVIRYEDGHYFKQE-----V--------------MGRACGILMHLYSLR 735 (1221)
T ss_pred cCCCceEEeecCCcceecccccccccCCcceEEEEecCCCeeecc-----c--------------CCcceEEEEccccCC
Confidence 48999999999998888531 2499988766431100 0 158999999999999
Q ss_pred C--CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhhhhcCCCcccC---
Q 009906 101 G--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVKDGLLAKAEL--- 175 (522)
Q Consensus 101 ~--~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~e~~~l~~~~l--- 175 (522)
| +||||||+|+ ++||||++++|++||||||||++++..|...|||+|+||||+||||||++.|++++++++.+.
T Consensus 736 s~~~~GiGDf~dl-~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l~~~~~~~~~~~~~~ 814 (1221)
T PRK14510 736 SQRPWGIGDFEEL-YALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLLPEAGLLTENEAALG 814 (1221)
T ss_pred CCCCCCccCHHHH-HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhccccccCcHHHhhhh
Confidence 9 9999999996 599999999999999999999999888889999999999999999999999999998876432
Q ss_pred ------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcch-----hhHHHHHHHhcCCCCchhhHHhHHHHHHHhhcCCC
Q 009906 176 ------PQPIDAERVNFAAVADLKDPLIAKAAERLIQSDG-----ELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTF 244 (522)
Q Consensus 176 ------~~~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~~~-----~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~~~~ 244 (522)
..+...+.|||+.|+.+|+++|+++|++|..... .++.+|++|+++ +++||++||+||||++++++.
T Consensus 815 ~~~~~~~~l~~~~~vDy~~v~~~K~~~L~~af~~f~~~~~~~~~~~~~~~f~~F~~~--~g~wL~~yA~F~aL~~~~~~~ 892 (1221)
T PRK14510 815 SAGPELAKLSALGSVDYAWVEALKEKLLRAAYEAFRDKLPRYPLDLSSPEFDRFIEE--GGDWLRRYAIFKALKAKFPGK 892 (1221)
T ss_pred hhhhhhhhcCCCCcccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHh--CchHHHHHHHHHHHHHHhCCC
Confidence 1123467899999999999999999999865311 245689999998 579999999999999999999
Q ss_pred CCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeE--EeeccccccCCchhhhcccccc
Q 009906 245 SWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISI--MGDMPIYVGYHSADVWANKKHF 322 (522)
Q Consensus 245 ~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L--~gDLpvgV~~dsaDvWa~~~~F 322 (522)
+|++||+++++++++++++++++|+++|+||+|+||+|++||+++|+||+++||.| ||||||||+++|||||++|++|
T Consensus 893 ~W~~Wp~~~~~~~~~~~~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f 972 (1221)
T PRK14510 893 GWHQWPEEYRLRKPPALEAFAEKYAEEVNYAKFLQYIADRQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCF 972 (1221)
T ss_pred CccCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHh
Confidence 99999999999999999999999999999999999999999999999999999866 9999999999999999999999
Q ss_pred ccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCCCCC
Q 009906 323 LLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAM 402 (522)
Q Consensus 323 ~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ta~ 402 (522)
+++ +++|||||+||++|||||+|+|||++|+++||+|||+|||++|++||+|||||||||+|||||| +..+|.
T Consensus 973 ~l~------~~~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~~w~~rlr~~~~~~~~lRIDH~~G~~r~W~IP-~~~~a~ 1045 (1221)
T PRK14510 973 ALD------VSIGAPPDYFNPEGQNWGLPPYDPRALRRDGYRWFIERIRANMRHAGALRIDHVRGLERLFEVP-QGASAK 1045 (1221)
T ss_pred cCC------CccCCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEeccHHhhHHheeCC-CCCCCC
Confidence 998 4999999999999999999999999999999999999999999999999999999999999999 567799
Q ss_pred CCceeeCChHHHHH--HHHHHcCCceEEecccCCCCHHHHHHHHHhCCCCceEeeeccCCCCCCCCCCCCCCCCcEEecC
Q 009906 403 DGRWKVGPGKSLFD--AIFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTG 480 (522)
Q Consensus 403 ~G~yv~~p~~~ll~--ale~~r~~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~~~~~~~~~P~~~~~~~va~~~ 480 (522)
+|+||+||+++||. ++|+.|++|+||||||||||++|+++|+++||+||||||||++++ .++++|++|+++||||||
T Consensus 1046 ~G~~v~~P~~~l~~~l~~e~~r~~~~vIgEDLG~vp~~v~~~l~~~gi~g~~Vl~Fe~~~~-~~~~~p~~~~~~~va~t~ 1124 (1221)
T PRK14510 1046 EGAYLKGPGEELFGQVALESQRAQCPVIGEDLGTIPSGVRELLAILGILSYRVLQFERLGE-GNFLPPPLYNALAAAYVG 1124 (1221)
T ss_pred CCeEEECCHHHHHHHHHHHhCccCCcEEEeeCCcCCHHHHHHHHHcCCCccEEEEeCccCC-CCCCChhhCCCCcEEECC
Confidence 99999999999996 456778899999999999999999999999999999999999876 458899999999999999
Q ss_pred cCchhhHHHHHHcCchhHHHH
Q 009906 481 THDNDTVKILYYAVLIHLFKI 501 (522)
Q Consensus 481 THD~ptl~Gww~~~d~~~~~~ 501 (522)
||||||++|||++.|++++++
T Consensus 1125 THD~~Tl~Gww~~~d~~~r~~ 1145 (1221)
T PRK14510 1125 THDLPTLAGWWEGVDLSEKEQ 1145 (1221)
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 999999999999999998754
No 8
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-117 Score=945.27 Aligned_cols=422 Identities=35% Similarity=0.619 Sum_probs=377.6
Q ss_pred CCceeEEEEecCccCCCCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhh
Q 009906 86 DRRRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (522)
Q Consensus 86 ~~r~~Gi~~~l~SLr~~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~ 165 (522)
+.|+.||.++..|++++||||||||+++.|+++++++|+++|||||||++++.. ..+|||+|+||+|+||+|||++.|+
T Consensus 12 ~~~g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~-~~~SPYs~~S~~a~N~~~Id~~~l~ 90 (520)
T COG1640 12 MKWGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAY-EEDSPYSPSSRRALNPLYIDVEALP 90 (520)
T ss_pred ccccceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccc-cCCCCCCchhhhccCceeecHHHhh
Confidence 345555555556666799999999999999999999999999999999999777 8899999999999999999999999
Q ss_pred hh-cCCCcccC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcCCCCchhhHHhHHHHHHHhhc
Q 009906 166 KD-GLLAKAEL---PQPIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSL 241 (522)
Q Consensus 166 e~-~~l~~~~l---~~~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~ 241 (522)
|. +++.++++ +...+.+.|||+.|+..|+++|+++|.+|..+. .+..+|++|+++ ++.||.+||+||||++++
T Consensus 91 e~~~~~~~~~~~~l~~~~~~~~vdy~~v~~~K~~~L~~~~~~f~~~~-~~~~~f~~F~~~--~~~wL~d~A~F~Al~e~~ 167 (520)
T COG1640 91 EFQDFLLDKDLQALPQLRALDWVDYAKVTALKRKALEKAFANFKKRK-EREKDFAAFCQE--EGYWLDDYALFMALKEHF 167 (520)
T ss_pred hhhhhccHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh--ccchhHHHHHHHHHHHHh
Confidence 98 66665543 444567899999999999999999999998764 667899999998 589999999999999999
Q ss_pred CCCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhccccc
Q 009906 242 NTFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKH 321 (522)
Q Consensus 242 ~~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~ 321 (522)
++.+|+.||+++++|+.++++++++.|+++|+||+||||+|++||+++|+||++.||+|||||||||+.+|||||++|++
T Consensus 168 ~~~~W~~Wp~~~~~~~~~~~~~~~~~~~eei~f~~~lQ~~~~~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~ 247 (520)
T COG1640 168 HAAGWQVWPDSYRRRDLSAVSAFIELHAEEVDFHRFLQWLFFRQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEY 247 (520)
T ss_pred cccccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEeecccceecCCchhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCCCC
Q 009906 322 FLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVA 401 (522)
Q Consensus 322 F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ta 401 (522)
|++++ +||||||.||++|||||+|+|||+.|+++||+||++|||++|+++|+|||||||||+|+|+||.|++++
T Consensus 248 f~~~~------~~GaPPD~f~~~GQ~Wg~p~yn~~~l~~~~y~wwierlr~~~~~~~~lRIDHf~Gl~rlW~ip~g~~~a 321 (520)
T COG1640 248 FCLDE------SAGAPPDVFNAQGQDWGLPPYNPEALKKDGYDWWIERLRANLKLYGILRIDHFRGLFRLWEIPYGEDTA 321 (520)
T ss_pred ccccc------cCCCCCCcccccccccCCCCCCHHHHHHcccHHHHHHHHHHHHhcCeeeeeeecchhhheeeeCCCccc
Confidence 99994 799999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred CCCceeeCChHHHH--HHHHHHcCCceEEecccCCCCHHHHHHHHHhCCCCceEeeeccC-CCCCCCCCCCCCCC-CcEE
Q 009906 402 MDGRWKVGPGKSLF--DAIFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFG-SDSKNPHLPHNHER-NQVV 477 (522)
Q Consensus 402 ~~G~yv~~p~~~ll--~ale~~r~~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~-~~~~~~~~P~~~~~-~~va 477 (522)
.|.|++||..+++ .++|+.+++|+||||||||||++|+++|+++||+|||||+||.+ .++. +++|+++++ |||+
T Consensus 322 -~g~~~~~~~~~~l~~l~le~~~~~~~vIgEDLGtvp~eV~~~l~~~gi~g~kIl~Fe~~~~~~~-~~~P~~~~~~nsva 399 (520)
T COG1640 322 -QGGYWRYPPGKLLFILALEALRANMLVIGEDLGTVPAEVRDLLAHLGIPGMKILRFEADNEDPS-PFLPPNYYPPNSVA 399 (520)
T ss_pred -cCCcccCCHHHHHHHHHHHhhhcCCcEEecccCCCCHHHHHHHHHcCCCceEEEeecccCCcCC-CCCChhhcccceeE
Confidence 5666666666655 37888888999999999999999999999999999999999754 3333 568888665 9999
Q ss_pred ecCcCchhhHHHHHHcCchhHHHHHHHHHhcC-------C-Cccccccccc
Q 009906 478 YTGTHDNDTVKILYYAVLIHLFKISLIRQKNK-------G-KYHIIWSIIS 520 (522)
Q Consensus 478 ~~~THD~ptl~Gww~~~d~~~~~~~~~~y~~~-------~-~~~~~~~~~~ 520 (522)
|||||||||++|||++.|.++++ ++..|+.. . .+.+.|.+|+
T Consensus 400 ~tsTHD~ptl~gww~~~~~~~~~-~~~~~l~~~~~~~~~~~~e~l~~~~~~ 449 (520)
T COG1640 400 TTSTHDLPTLRGWWEELDEELRR-RLGLLLPEAYDDRLAAIAELLVWLHLR 449 (520)
T ss_pred EeccCCChhHHHHHhCCCHHHHH-HHHHhhhhhhhhHHHhHHHHHHHHHHH
Confidence 99999999999999999888766 46666532 1 3667777765
No 9
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=8.1e-108 Score=906.99 Aligned_cols=401 Identities=28% Similarity=0.480 Sum_probs=353.5
Q ss_pred CCceeEEEEecCccCCC--CCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCC-CCCCCCccccccccccccChh
Q 009906 86 DRRRAGVLLHPTSFRGP--YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANE-EGSPYSGQDANCGNTLLISLE 162 (522)
Q Consensus 86 ~~r~~Gi~~~l~SLr~~--~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~-~~SPYsp~Sr~alNPlYI~le 162 (522)
..|.+||++|+|||||. |||||||| +++|||||+++|+++|||||||+|++..+. ++|||+|+|+||+||+||||+
T Consensus 58 ~~R~aGill~l~SLrS~~s~GIGDfgd-L~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle 136 (745)
T PLN03236 58 AWKGSGMALPVFSLRSAESVGAGDFGD-LEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLK 136 (745)
T ss_pred chhhheeeeccccCCCCCCCCcccHHH-HHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHH
Confidence 46899999999999986 99999999 579999999999999999999999754433 458999999999999999999
Q ss_pred hhhhhcC-----------CC--cccCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcCCCCch
Q 009906 163 ELVKDGL-----------LA--KAELPQ---PIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISS 226 (522)
Q Consensus 163 ~l~e~~~-----------l~--~~~l~~---~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~ 226 (522)
.|++.++ ++ ++++.. ..+.+.|||++|+++|+++|+++|++|... ..+..+|++|+++ ++.
T Consensus 137 ~L~e~~~~~~~~~~~~~~l~~~~~el~~~~~~~~~~~VDY~~V~~~K~~~Lr~af~~f~~~-~~~~~~F~~F~~~--~~~ 213 (745)
T PLN03236 137 ELVEEAANAAAAGPDAGRLAALAAEIDAAKHALDLKEIDYEATMKEKLMFAKRAFEADGAK-FLASDACERFVKA--NAS 213 (745)
T ss_pred HhhhhhhhcccccchhhhhhhhHHHHHHhhhccCccceeHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHh--Cch
Confidence 9998764 22 122222 123578999999999999999999998643 2334689999998 589
Q ss_pred hhHHhHHHHHHHhhcCCCCCCCCchhhhcCCHHHHHHHH---HhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEee
Q 009906 227 WLEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEIY---QSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGD 303 (522)
Q Consensus 227 wL~~yA~f~aL~~~~~~~~W~~Wp~~~~~~~~~av~~~~---~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L~gD 303 (522)
||++||+||||++++++.+|++||+++++++++++++++ +++.++|+||+|+||+|++||+++++||+++||+||||
T Consensus 214 WL~dYAlF~ALke~~~~~~w~~WP~~~~~~~~~al~~~~~~~~~~~~eI~f~~flQ~~~~~Q~~~~~~yA~~~GI~L~GD 293 (745)
T PLN03236 214 WLKPYAVFCALRDLFGTAEHWRWGDLFATFAAAILAKIDCPGGDLYESTRFFFYLQYHLDRQLRRAAAHAAAKGVILKGD 293 (745)
T ss_pred HHHHHHHHHHHHHHhCCCCccCCChhhccCCHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 999999999999999999999999999999999999998 77899999999999999999999999999999999999
Q ss_pred ccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeec
Q 009906 304 MPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRID 383 (522)
Q Consensus 304 LpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRID 383 (522)
|||||++||||||++|++|+++ .++|||||+||++|||||+|+|||++|+++||+|||+||++++++||++|||
T Consensus 294 LPIgVa~dSaDvWa~p~lF~ld------~~aGAPPD~FS~~GQnWG~P~YnW~~l~~dgY~WWr~Rlr~~~~~~dalRID 367 (745)
T PLN03236 294 LPIGVDKASVDTWMHPKLFRMD------TSTGAPPDAFDANGQNWGFPTYDWEEMAEDDYAWWRARMQHLEQFFSAIRID 367 (745)
T ss_pred eeceeCCCcHHHhcCHHHhcCC------CCcCCCCCCCCcccCcCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEee
Confidence 9999999999999999999998 4899999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeeeCCCCCCCCCceeeC---------------------C--------------------------h-----
Q 009906 384 HFRGFAGFWAVPSEAKVAMDGRWKVG---------------------P--------------------------G----- 411 (522)
Q Consensus 384 H~lGlfRlW~IP~g~~ta~~G~yv~~---------------------p--------------------------~----- 411 (522)
|||||+|||+||+++.||..|.|++. | +
T Consensus 368 H~~Gf~R~W~IP~~~~ta~~G~w~ps~p~s~~el~~~Gl~~~~r~~~P~i~~~~l~~~fg~~~~~v~~~~l~~~~~~~~~ 447 (745)
T PLN03236 368 HILGFFRIWELPAHAKTGRLGRFRPSLPIRKDELAARGLWDLDRLCEPWIQSEELEALFGDNDGEAAGRFFEETDAETKP 447 (745)
T ss_pred chhhhceeeeecCCCccccCceeeecCCCCHHHHHhcCCcchhhhccccccHHHHHHHhcccHHHHHHHHHHhhcccccc
Confidence 99999999999999999999998764 0 0
Q ss_pred --------------------------------------------HHHHHHH-----------------------------
Q 009906 412 --------------------------------------------KSLFDAI----------------------------- 418 (522)
Q Consensus 412 --------------------------------------------~~ll~al----------------------------- 418 (522)
+-|+..+
T Consensus 448 ~~~~~~~y~~k~e~~te~~i~~~~~~~~~~~~~~~~~~~~~~~~~gL~~l~~nv~~i~d~~~~~~f~Pr~~~~~t~s~~~ 527 (745)
T PLN03236 448 DGTTRGLWKFRKEFDTEQAIFASEALKPRDDFPDHLNDEQEELRAGLMQLFQNRCLLRDPDDADAFYPRFEFEETTSFQA 527 (745)
T ss_pred ccccCCeeeechhhhhHHHHHhhhccccccccchhhhhhHHHHHHHHHHHhcCeeeeecCCCCcCccccccccccchhhh
Confidence 0000000
Q ss_pred -----------------------------------HHHcCCceEEecccCCCCHHHHHHHHHhCCCCceEeeeccCCCCC
Q 009906 419 -----------------------------------FRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSK 463 (522)
Q Consensus 419 -----------------------------------e~~r~~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~~~~~ 463 (522)
.....++.|||||||+||+.|+.+|+++||+|++|..++++.+..
T Consensus 528 L~~~~k~~~~~L~~dy~~~r~~~~W~~~a~k~L~~l~~~t~mlvcgEDLG~vP~~V~~vm~eL~Il~LrIqRmpk~~~~~ 607 (745)
T PLN03236 528 LDDWARDALRDLSDDYFFARQDATWRENARKTLPALLKCTEMLVCGEDLGFTPMCVPPVLDELGILGLRIQRMPHDGESG 607 (745)
T ss_pred cCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCeEEehhhcCCCchhHHHHHHHcCCCceEEeecCCCCCCC
Confidence 011125788999999999999999999999999999999875324
Q ss_pred CCCCCCCCCCCcEEecCcCchhhHHHHHHcCchh
Q 009906 464 NPHLPHNHERNQVVYTGTHDNDTVKILYYAVLIH 497 (522)
Q Consensus 464 ~~~~P~~~~~~~va~~~THD~ptl~Gww~~~d~~ 497 (522)
.|..|++|+..||+++||||++|++|||++. .+
T Consensus 608 ~F~~~~~ypy~SV~t~StHD~stLR~WWee~-~~ 640 (745)
T PLN03236 608 EFGRPERYPYETVCSPSCHDTMTTRAWWEAD-AA 640 (745)
T ss_pred cCCChhhCCCceeEeCCCCCCHHHHHHHhhC-HH
Confidence 5888999999999999999999999999884 44
No 10
>PLN02950 4-alpha-glucanotransferase
Probab=100.00 E-value=5.8e-103 Score=891.07 Aligned_cols=410 Identities=25% Similarity=0.436 Sum_probs=356.0
Q ss_pred CCceeEEEEecCccCC--CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCC-CCCCCCCccccccccccccChh
Q 009906 86 DRRRAGVLLHPTSFRG--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKAN-EEGSPYSGQDANCGNTLLISLE 162 (522)
Q Consensus 86 ~~r~~Gi~~~l~SLr~--~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~-~~~SPYsp~Sr~alNPlYI~le 162 (522)
..|.+||++|+||||| +||||||+|+ ++||||++++|+++|||||||+|+.... .++|||+|+|+||+||+||||+
T Consensus 258 ~~R~~Gi~~~l~SLrS~~s~GIGDf~dl-~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~ 336 (909)
T PLN02950 258 PWRGAGVAVPVFSIRSEEDVGVGEFLDL-KLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQ 336 (909)
T ss_pred CccceEEEEecccCCCCCCCCeeCHHHH-HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHH
Confidence 3689999999999998 5899999996 5999999999999999999999975432 2457999999999999999999
Q ss_pred hhhhhcCCCc---ccCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcCCCCchhhHHhHHHHH
Q 009906 163 ELVKDGLLAK---AELPQ---PIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAA 236 (522)
Q Consensus 163 ~l~e~~~l~~---~~l~~---~~~~~~VDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~a 236 (522)
.|++. ++. +++.. ..+.+.|||++|+++|+++|+++|++|... ..+..+|++|+++ ++.||++||+||+
T Consensus 337 ~l~~~--l~~~~~~~~~~~~~~~~~~~VDY~~v~~~K~~~L~~~f~~f~~~-~~~~~~F~~F~~~--~~~WL~~yA~F~a 411 (909)
T PLN02950 337 ALSER--LPEDLKAEIQKARKQLDKKDVDYEATLATKLSIAKKVFDLEKDL-TLNSSSFKKFFSE--NEHWLKPYAAFCF 411 (909)
T ss_pred HHHhh--hhhhHHHHHHHhhhccCcccccHHHHHHHHHHHHHHHHHhhhhc-cccHHHHHHHHHh--CccHHHHHHHHHH
Confidence 99865 221 22222 123578999999999999999999998543 2234789999998 6899999999999
Q ss_pred HHhhcCCCCCCCCch--hhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCCchh
Q 009906 237 IDDSLNTFSWYLWPE--SLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSAD 314 (522)
Q Consensus 237 L~~~~~~~~W~~Wp~--~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaD 314 (522)
|++++++.+|++||+ +++.++.+++..+++++.++|+||+|+||+|++||+++++||+++||+|||||||||++||||
T Consensus 412 L~~~~~~~~w~~Wp~~~~~~~~~~~~l~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaD 491 (909)
T PLN02950 412 LRDFFETSDHSQWGRFSDFSDEKLEKLVSPGSLHYDTICFHYYIQYHLHSQLSEAAEYARKKGVVLKGDLPIGVDRNSVD 491 (909)
T ss_pred HHHHhCCCCcccCcccccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeeceeCCCcHH
Confidence 999999999999998 677888888888899999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeee
Q 009906 315 VWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAV 394 (522)
Q Consensus 315 vWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~I 394 (522)
||++|++|+++ .++|||||+||++|||||+|+|||++|+++||+||++|||++|++||++||||||||||+|||
T Consensus 492 vWa~p~lF~l~------~~aGaPPD~Fs~~GQ~WG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~I 565 (909)
T PLN02950 492 TWVYPNLFRMN------TSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDHILGFFRIWEL 565 (909)
T ss_pred HhcCHHHhcCC------CccCCCCCcCCcccccCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCEEEEecchhhcEeeEe
Confidence 99999999998 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCceeeCC---hH-----------------------------------------------------------
Q 009906 395 PSEAKVAMDGRWKVGP---GK----------------------------------------------------------- 412 (522)
Q Consensus 395 P~g~~ta~~G~yv~~p---~~----------------------------------------------------------- 412 (522)
|++++||..|.|++.- .+
T Consensus 566 P~~~~~a~~G~w~~~~~~s~~el~~~gl~~~~r~~~p~i~~~~l~~~fg~~~~~v~~~~~~~~~~~~y~~k~~~~te~~i 645 (909)
T PLN02950 566 PAHAVTGLVGKFRPSIPLSQEELEQEGIWDFDRLSRPYIRQEFLQEKFGDRWTEIASNFLNEYQKGCYEFKEDCNTEKKI 645 (909)
T ss_pred cCCCccccCceEecCCCCCHHHHHhcCCccHhhhccccccHHHHHHHhcccHHHHHHHHHHhcCCCcEEeccccchHHHH
Confidence 9999999999887710 00
Q ss_pred ----------------------HHHH------------------------------------------------------
Q 009906 413 ----------------------SLFD------------------------------------------------------ 416 (522)
Q Consensus 413 ----------------------~ll~------------------------------------------------------ 416 (522)
-|+.
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~~d~~~~~~f~pr~~~~~~~s~~~L~~~~~~~~~~l~~~~~~~r~~~ 725 (909)
T PLN02950 646 AAKLKRLAEKSWLLEEEEKIRRGLFDLLQNVVLIRDPEDPRKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQED 725 (909)
T ss_pred HHhhccccccchhhhhHHHHHHHHHHHhhceeEEecCCCCCCcccceecccccchhhcCHHHHHHHHHHHHHHHhhcCHH
Confidence 0000
Q ss_pred -----H---H--HHHcCCceEEecccCCCCHHHHHHHHHhCCCCceEeeeccCCCCCCCCCCCCCCCCcEEecCcCchhh
Q 009906 417 -----A---I--FRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDT 486 (522)
Q Consensus 417 -----a---l--e~~r~~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~~~~~~~~~P~~~~~~~va~~~THD~pt 486 (522)
+ | .....++.|||||||+||+.|+..|+++||+|.+|..++++.+ ..|..|.+|+..+|++++|||++|
T Consensus 726 ~w~~~a~~~L~~l~~~t~ml~cgEDLG~vp~~v~~vm~~l~i~~l~iqr~~~~~~-~~f~~~~~y~y~sV~t~stHD~~t 804 (909)
T PLN02950 726 LWRENALKTLPALLNSSDMLACGEDLGLVPACVHPVMQELGLLGLRIQRMPSEPG-LEFGIPSQYSYMTVCAPSCHDCST 804 (909)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecccCcCccchHHHHHHhCCcceEEEeccCCCC-CCCCChhhCCcceeeecCCCCCHH
Confidence 0 0 0112258899999999999999999999999999999998744 347788999999999999999999
Q ss_pred HHHHHHcCchhHHHHHHHHHhcC
Q 009906 487 VKILYYAVLIHLFKISLIRQKNK 509 (522)
Q Consensus 487 l~Gww~~~d~~~~~~~~~~y~~~ 509 (522)
|++||++. .+.+.++....|+.
T Consensus 805 lr~WWe~~-~~~~~~~~~~~l~~ 826 (909)
T PLN02950 805 LRAWWEED-EERRERFYKHVLGS 826 (909)
T ss_pred HHHHHhhC-HHHHHHHHHHHhCc
Confidence 99999875 34344456666655
No 11
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.52 E-value=0.0031 Score=71.60 Aligned_cols=134 Identities=21% Similarity=0.275 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHH
Q 009906 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSW 365 (522)
Q Consensus 286 l~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~w 365 (522)
++++.+.|+++||+||.|+.+ ++-|.|-|.. ..|. |.+...-.-|.+ ..-..||.+.+|+..-+-. +.
T Consensus 222 ~k~lv~~~H~~Gi~VilD~V~--nH~~~~~~~~-~~~~----~~~~~~~~~~~~---~~~~~w~~~~~n~~~~~vr--~~ 289 (633)
T PRK12313 222 FMYLVDALHQNGIGVILDWVP--GHFPKDDDGL-AYFD----GTPLYEYQDPRR---AENPDWGALNFDLGKNEVR--SF 289 (633)
T ss_pred HHHHHHHHHHCCCEEEEEECC--CCCCCCcccc-cccC----CCcceeecCCCC---CcCCCCCCcccCCCCHHHH--HH
Confidence 677788899999999999985 4444453321 1121 111111111111 1112688877776432222 33
Q ss_pred HHHHHHHHhh--hcCeeeeccccccc-------eeeeeeCCCCCCCCCceeeCChHHHHH----HHHHHcCCceEEeccc
Q 009906 366 WIHRIRRARD--LYDEFRIDHFRGFA-------GFWAVPSEAKVAMDGRWKVGPGKSLFD----AIFRSVGNINIIAEDL 432 (522)
Q Consensus 366 w~~rlr~~~~--~~g~lRIDH~lGlf-------RlW~IP~g~~ta~~G~yv~~p~~~ll~----ale~~r~~~~vIgEDL 432 (522)
.++-++.-++ +.|++|+|.+-.+. .-| .|.. ..|. ......+++. .|.+..+++.+|||+.
T Consensus 290 l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~-~~~~----~~~~-~~~~~~~fl~~~~~~v~~~~p~~~liaE~~ 363 (633)
T PRK12313 290 LISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEW-TPNK----YGGR-ENLEAIYFLQKLNEVVYLEHPDVLMIAEES 363 (633)
T ss_pred HHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCc-CCcc----cCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5566666665 58999999664321 112 3321 1121 2223345664 4566778999999997
Q ss_pred CCCCH
Q 009906 433 GVITE 437 (522)
Q Consensus 433 G~Vp~ 437 (522)
..-|.
T Consensus 364 ~~~~~ 368 (633)
T PRK12313 364 TAWPK 368 (633)
T ss_pred CCCcc
Confidence 54443
No 12
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.15 E-value=0.007 Score=69.83 Aligned_cols=184 Identities=15% Similarity=0.177 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCcccc----CCCCCCCChHHHHHh
Q 009906 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQ----LWGSPLYDWKAMEKD 361 (522)
Q Consensus 286 l~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ----~WG~P~y~w~~l~~~ 361 (522)
++++.+.|+++||++|-|+-. ++-+-+....-..| -|.++.+|....+ .||...+|-..-+
T Consensus 302 lk~LVd~aH~~GI~VilDvV~--nH~~~~~~~gl~~f-----------Dg~~~~Yf~~~~~g~~~~w~~~~~N~~~~e-- 366 (758)
T PLN02447 302 LKYLIDKAHSLGLRVLMDVVH--SHASKNTLDGLNGF-----------DGTDGSYFHSGPRGYHWLWDSRLFNYGNWE-- 366 (758)
T ss_pred HHHHHHHHHHCCCEEEEEecc--cccccccccccccc-----------CCCCccccccCCCCCcCcCCCceecCCCHH--
Confidence 667778899999999999875 22222211000111 1445566664332 3665555533211
Q ss_pred chHHHHHHHHHHhh--hcCeeeeccccccceeeeeeCCCC-CCCCCcee----eCChHHHHH----HHHHHcCCceEEec
Q 009906 362 GFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAK-VAMDGRWK----VGPGKSLFD----AIFRSVGNINIIAE 430 (522)
Q Consensus 362 gY~ww~~rlr~~~~--~~g~lRIDH~lGlfRlW~IP~g~~-ta~~G~yv----~~p~~~ll~----ale~~r~~~~vIgE 430 (522)
--+..++-++.-++ +.|++|+|.+--+.-+ --..+.. +...+.|. --..-.+|. .|.+..+++..|||
T Consensus 367 Vr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~-~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAE 445 (758)
T PLN02447 367 VLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYH-HHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAE 445 (758)
T ss_pred HHHHHHHHHHHHHHHhCcccccccchhhhhcc-ccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 11456677777776 6899999977654211 0000000 00011121 111222342 45567899999999
Q ss_pred ccCCCCHHHHHH---------HHHhCCCCceEeeeccCCCCCC-------CCCCCCCCCCcEEecCcCchh
Q 009906 431 DLGVITEDVVQL---------RKSIGAPGMAVLQFGFGSDSKN-------PHLPHNHERNQVVYTGTHDND 485 (522)
Q Consensus 431 DLG~Vp~~Vr~~---------l~~~g~~G~~Vl~Fe~~~~~~~-------~~~P~~~~~~~va~~~THD~p 485 (522)
|....|.-.+.. +=.+|++-+-+-+++.+.+... ......|.|++|+|.-+||--
T Consensus 446 d~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDev 516 (758)
T PLN02447 446 DVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQA 516 (758)
T ss_pred cCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCee
Confidence 986555432211 1111111111112222111110 012235779999999999964
No 13
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.95 E-value=0.024 Score=68.58 Aligned_cols=134 Identities=19% Similarity=0.326 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHH
Q 009906 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSW 365 (522)
Q Consensus 286 l~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~w 365 (522)
++++.+.|+++||++|-|+.. ++-+.|.|... .|. |.+...- +|.--...++||...+|..+-+ =-+.
T Consensus 817 fk~lVd~~H~~GI~VILD~V~--nH~~~d~~~l~-~fd----g~~~y~~---~d~~~g~~~~Wg~~~fn~~~~e--Vr~f 884 (1224)
T PRK14705 817 FRFLVDSLHQAGIGVLLDWVP--AHFPKDSWALA-QFD----GQPLYEH---ADPALGEHPDWGTLIFDFGRTE--VRNF 884 (1224)
T ss_pred HHHHHHHHHHCCCEEEEEecc--ccCCcchhhhh-hcC----CCccccc---CCcccCCCCCCCCceecCCCHH--HHHH
Confidence 566678899999999999985 55567766432 221 1111110 1111123578999888775432 2244
Q ss_pred HHHHHHHHhh--hcCeeeeccccccceeeeeeCCCCCCCCCceee--------CChHHHHH----HHHHHcCCceEEecc
Q 009906 366 WIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKV--------GPGKSLFD----AIFRSVGNINIIAED 431 (522)
Q Consensus 366 w~~rlr~~~~--~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~--------~p~~~ll~----ale~~r~~~~vIgED 431 (522)
.++-++.-++ +.|++|+|-+-.+. | .+.+ -..|.|++ ...-++|+ .|.+..+++.+|||+
T Consensus 885 li~~a~~Wl~eyhiDGfR~Dav~~ml-y----~Dys-r~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEe 958 (1224)
T PRK14705 885 LVANALYWLDEFHIDGLRVDAVASML-Y----LDYS-REEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEE 958 (1224)
T ss_pred HHHHHHHHHHHhCCCcEEEeehhhhh-h----cccc-cccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 5555555554 67899999986642 1 0100 11233331 12345663 455678899999999
Q ss_pred cCCCCH
Q 009906 432 LGVITE 437 (522)
Q Consensus 432 LG~Vp~ 437 (522)
-..-|.
T Consensus 959 st~~p~ 964 (1224)
T PRK14705 959 STAFPG 964 (1224)
T ss_pred CCCCcC
Confidence 876554
No 14
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.86 E-value=0.03 Score=64.71 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCccchHHHHHHHHHHHHhCCCeeeEccCCC
Q 009906 103 YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVP 134 (522)
Q Consensus 103 ~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~ 134 (522)
-++|+|..++.++++.++++|.+.|+|+||..
T Consensus 259 ~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e 290 (726)
T PRK05402 259 GRFLSYRELADQLIPYVKEMGFTHVELLPIAE 290 (726)
T ss_pred CcccCHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 45899999988888999999999999999975
No 15
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.81 E-value=0.035 Score=62.93 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHH
Q 009906 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSW 365 (522)
Q Consensus 286 l~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~w 365 (522)
++++.+.|+++||+||-|+.+ ++-+.|.+... .|. +.|..... |........||.+-+|...- .=-+.
T Consensus 208 lk~lV~~~H~~Gi~VilD~V~--NH~~~~~~~~~-~~~----~~~~y~~~---~~~~~~~~~w~~~~~~~~~~--~Vr~~ 275 (613)
T TIGR01515 208 FMYFVDACHQAGIGVILDWVP--GHFPKDDHGLA-EFD----GTPLYEHK---DPRDGEHWDWGTLIFDYGRP--EVRNF 275 (613)
T ss_pred HHHHHHHHHHCCCEEEEEecc--cCcCCccchhh-ccC----CCcceecc---CCccCcCCCCCCceecCCCH--HHHHH
Confidence 677788899999999999985 44444433211 121 11111111 11112234688876665322 12245
Q ss_pred HHHHHHHHhh--hcCeeeeccccccce--------eeeeeCCCCCCCCCceeeCChHHHHH----HHHHHcCCceEEecc
Q 009906 366 WIHRIRRARD--LYDEFRIDHFRGFAG--------FWAVPSEAKVAMDGRWKVGPGKSLFD----AIFRSVGNINIIAED 431 (522)
Q Consensus 366 w~~rlr~~~~--~~g~lRIDH~lGlfR--------lW~IP~g~~ta~~G~yv~~p~~~ll~----ale~~r~~~~vIgED 431 (522)
+++-++.-++ +.|++|+|.+-.+.- -| .|.. ..|.... ...+++. .|.+..+++.+|||+
T Consensus 276 l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~-~~~~----~~~~~~~-~~~~fl~~~~~~v~~~~p~~~liaE~ 349 (613)
T TIGR01515 276 LVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEW-SPNE----DGGRENL-EAVDFLRKLNQTVYEAFPGVVTIAEE 349 (613)
T ss_pred HHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccc-cccc----cCCcCCh-HHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 6677777776 588999997643221 12 3321 0111111 2345664 455667899999998
Q ss_pred cCCCC
Q 009906 432 LGVIT 436 (522)
Q Consensus 432 LG~Vp 436 (522)
-..-|
T Consensus 350 ~~~~~ 354 (613)
T TIGR01515 350 STEWP 354 (613)
T ss_pred CCCCc
Confidence 75443
No 16
>PLN02960 alpha-amylase
Probab=96.73 E-value=0.037 Score=64.62 Aligned_cols=135 Identities=15% Similarity=0.203 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCc----cccCCCCCCCChHHHHH
Q 009906 285 QWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSE----TGQLWGSPLYDWKAMEK 360 (522)
Q Consensus 285 Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~----~GQ~WG~P~y~w~~l~~ 360 (522)
.++++.+.|+++||+||-|+-. ++-+.|....-..|. |.+.-+|.. .-..||...+|-..-
T Consensus 467 dfk~LVd~aH~~GI~VILDvV~--NH~~~d~~~~L~~FD-----------G~~~~Yf~~~~~g~~~~WG~~~fNy~~~-- 531 (897)
T PLN02960 467 DFKRLVDEAHGLGLLVFLDIVH--SYAAADEMVGLSLFD-----------GSNDCYFHSGKRGHHKRWGTRMFKYGDH-- 531 (897)
T ss_pred HHHHHHHHHHHCCCEEEEEecc--cccCCccccchhhcC-----------CCccceeecCCCCccCCCCCcccCCCCH--
Confidence 3667788899999999999864 434444210001121 222223332 123598876664431
Q ss_pred hchHHHHHHHHHHhh--hcCeeeeccccccceeeeeeCCCCCCCCC-------ceeeCChHHHHH----HHHHHcCCceE
Q 009906 361 DGFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDG-------RWKVGPGKSLFD----AIFRSVGNINI 427 (522)
Q Consensus 361 ~gY~ww~~rlr~~~~--~~g~lRIDH~lGlfRlW~IP~g~~ta~~G-------~yv~~p~~~ll~----ale~~r~~~~v 427 (522)
.=-+..++-++.-++ +.|++|+|-|-.+.-+ -.|.. ...| .++-.....+|. .|.+..+++.+
T Consensus 532 eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~---d~g~~-~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vil 607 (897)
T PLN02960 532 EVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYT---HNGFA-SFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIIT 607 (897)
T ss_pred HHHHHHHHHHHHHHHHHCCCceeecccceeeee---ccCcc-ccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEE
Confidence 122456666666654 6789999977543210 00100 0112 122223334543 34455688999
Q ss_pred EecccCCCCHH
Q 009906 428 IAEDLGVITED 438 (522)
Q Consensus 428 IgEDLG~Vp~~ 438 (522)
||||-..-|.-
T Consensus 608 IAEdss~~P~v 618 (897)
T PLN02960 608 IAEDATFYPGL 618 (897)
T ss_pred EEECCCCCCCc
Confidence 99998755543
No 17
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.98 E-value=0.18 Score=57.65 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHH
Q 009906 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSW 365 (522)
Q Consensus 286 l~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~w 365 (522)
++++.+.|+++||+||-|+.+ ++-+.|-+ .++.. +|.|...- .|...-.-.+||...+|-.+- .==+.
T Consensus 219 ~~~lv~~~H~~gi~VilD~v~--nH~~~~~~---~l~~~--dg~~~y~~---~~~~~g~~~~w~~~~~~~~~~--eVr~~ 286 (639)
T PRK14706 219 FKYLVNHLHGLGIGVILDWVP--GHFPTDES---GLAHF--DGGPLYEY---ADPRKGYHYDWNTYIFDYGRN--EVVMF 286 (639)
T ss_pred HHHHHHHHHHCCCEEEEEecc--cccCcchh---hhhcc--CCCcceec---cCCcCCcCCCCCCcccCCCCH--HHHHH
Confidence 667788899999999999886 33343422 12222 22221111 111111124688765553221 11134
Q ss_pred HHHHHHHHhh--hcCeeeecccccc--ceee---eeeCCCCCCCCCceeeCChHHHHH----HHHHHcCCceEEecccCC
Q 009906 366 WIHRIRRARD--LYDEFRIDHFRGF--AGFW---AVPSEAKVAMDGRWKVGPGKSLFD----AIFRSVGNINIIAEDLGV 434 (522)
Q Consensus 366 w~~rlr~~~~--~~g~lRIDH~lGl--fRlW---~IP~g~~ta~~G~yv~~p~~~ll~----ale~~r~~~~vIgEDLG~ 434 (522)
.++-++.-++ +.|++|+|.+-.+ ..+| |+|.- .|.=..-...++|. ++.+..+++.+||||--.
T Consensus 287 l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~-----~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~ 361 (639)
T PRK14706 287 LIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNI-----HGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTS 361 (639)
T ss_pred HHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccc-----cCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 5555666555 7899999976554 2222 24432 11111122344553 455667889999999754
No 18
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=95.63 E-value=0.033 Score=55.43 Aligned_cols=179 Identities=17% Similarity=0.229 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCCchhhhc----------cccccccccCCCCceeecCCCCCCC--ccccCCC--
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA----------NKKHFLLNRRGFPLEVSGVPPDAFS--ETGQLWG-- 349 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa----------~~~~F~~~~~g~p~~~~GAPPD~Fs--~~GQ~WG-- 349 (522)
++++++.+.|+++||.||-|+.+- |......|. +++.|.... .-+.||-.+. ..+.+|.
T Consensus 52 ~d~~~Lv~~~h~~gi~VilD~V~N-H~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 124 (316)
T PF00128_consen 52 EDFKELVDAAHKRGIKVILDVVPN-HTSDDHPWFQDSLNYFDNPYSDYYYWRD------GEGSPPGNWYSYFGGSNWEYD 124 (316)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETS-EEETTSHHHHHHHTHTTSTTGTTBEEES------BTSTTSSTBBCSTTTSSEESC
T ss_pred hhhhhhhhccccccceEEEeeecc-ccccccccccccccccccccccceeecc------ccccccccccccccccccccc
Confidence 478889999999999999999974 222222341 122222110 0244544332 2333433
Q ss_pred -----------CCCCChHHHHHhchHHHHHHHHHHh-hhcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHHHH
Q 009906 350 -----------SPLYDWKAMEKDGFSWWIHRIRRAR-DLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDA 417 (522)
Q Consensus 350 -----------~P~y~w~~l~~~gY~ww~~rlr~~~-~~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll~a 417 (522)
+|-+|++.= .--..+++.++.-+ +..|++|||++..+.. .-.+++..+
T Consensus 125 ~~~~~~~~~~~~~dln~~n~--~v~~~i~~~~~~w~~~giDGfR~D~~~~~~~------------------~~~~~~~~~ 184 (316)
T PF00128_consen 125 DWGDEYQFWSDLPDLNYENP--EVREYIIDVLKFWIEEGIDGFRLDAAKHIPK------------------EFWKEFRDE 184 (316)
T ss_dssp HHTHCHSSSTTSEEBETTSH--HHHHHHHHHHHHHHHTTESEEEETTGGGSSH------------------HHHHHHHHH
T ss_pred ccccccccccccchhhhhhh--hhhhhhcccccchhhceEeEEEEccccccch------------------hhHHHHhhh
Confidence 233433321 11122334443333 3489999999998766 011233346
Q ss_pred HHHHcCCceEEecccCCCCHHHHHHHHHhCCCCceEeeec--------c---CCCCCC------------CCCCCCCCCC
Q 009906 418 IFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFG--------F---GSDSKN------------PHLPHNHERN 474 (522)
Q Consensus 418 le~~r~~~~vIgEDLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe--------~---~~~~~~------------~~~P~~~~~~ 474 (522)
+.+..+...+|||-++.-...++........-...++.|. . ...... ...+. ...
T Consensus 185 ~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 262 (316)
T PF00128_consen 185 VKEEKPDFFLIGEVWGGDNEDLRQYAYDGYFDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYPD--PYR 262 (316)
T ss_dssp HHHHHTTSEEEEEESSSSHHHHHHHHHHGTTSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHSTT--GGG
T ss_pred hhhhccccceeeeeccCCccccchhhhccccccchhhcccccccccchhhhhccccchhhhhhhhhhhhhhhhcc--cce
Confidence 6666688999999999877655555444433322233332 0 111000 00111 456
Q ss_pred cEEecCcCchhhHHHHH
Q 009906 475 QVVYTGTHDNDTVKILY 491 (522)
Q Consensus 475 ~va~~~THD~ptl~Gww 491 (522)
.+.++++||++.+..=.
T Consensus 263 ~~~f~~nHD~~r~~~~~ 279 (316)
T PF00128_consen 263 AVNFLENHDTPRFASRF 279 (316)
T ss_dssp EEEESSHTTSSTHHHHT
T ss_pred eeecccccccccchhhh
Confidence 89999999999965433
No 19
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.31 E-value=0.24 Score=56.10 Aligned_cols=128 Identities=18% Similarity=0.232 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecC------C-CCCC--Cccc--cCCC----
Q 009906 285 QWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGV------P-PDAF--SETG--QLWG---- 349 (522)
Q Consensus 285 Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GA------P-PD~F--s~~G--Q~WG---- 349 (522)
+++++.+.|+++||+||.|+.+ ++-|.+- + .|.....| ..|+ | .|.| ...| +.|.
T Consensus 227 df~~Lv~~aH~rGikVilD~V~--NH~~~~~---~-~f~~~~~~----~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~ 296 (598)
T PRK10785 227 ALLRLRHATQQRGMRLVLDGVF--NHTGDSH---P-WFDRHNRG----TGGACHHPDSPWRDWYSFSDDGRALDWLGYAS 296 (598)
T ss_pred HHHHHHHHHHHCCCEEEEEECC--CcCCCCC---H-HHHHhhcc----ccccccCCCCCcceeeEECCCCCcCCcCCCCc
Confidence 3677788899999999999986 5444441 1 23221111 1222 1 1222 2223 2343
Q ss_pred CCCCChHHH--HHhchHHHHHHHHHHhh---hcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHH----HHHHH
Q 009906 350 SPLYDWKAM--EKDGFSWWIHRIRRARD---LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLF----DAIFR 420 (522)
Q Consensus 350 ~P~y~w~~l--~~~gY~ww~~rlr~~~~---~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll----~ale~ 420 (522)
+|-+|++.= ++.=++++.+.++.=++ ..|++|||-+.-+ |.+. | ...+ .+++ .++.+
T Consensus 297 lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v------~~~~-----~--~~~~-~~f~~~~~~~vk~ 362 (598)
T PRK10785 297 LPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHML------GEGG-----G--ARNN-LQHVAGITQAAKE 362 (598)
T ss_pred CccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHh------cccc-----C--cccc-HHHHHHHHHHHHh
Confidence 566665432 22222334445555555 5899999977543 3221 1 1111 2333 46677
Q ss_pred HcCCceEEecccCCCC
Q 009906 421 SVGNINIIAEDLGVIT 436 (522)
Q Consensus 421 ~r~~~~vIgEDLG~Vp 436 (522)
..+++.+|||-.+...
T Consensus 363 ~~pd~~ligE~~~~~~ 378 (598)
T PRK10785 363 ENPEAYVLGEHFGDAR 378 (598)
T ss_pred hCCCeEEEEeccCChh
Confidence 7889999999765433
No 20
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.17 E-value=0.22 Score=56.52 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCeEEeeccc
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPI 306 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpv 306 (522)
++++++.+.|+++||+||-|+-+
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV~ 251 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVVY 251 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEc
Confidence 45888899999999999999986
No 21
>PRK03705 glycogen debranching enzyme; Provisional
Probab=94.82 E-value=0.25 Score=56.72 Aligned_cols=181 Identities=17% Similarity=0.244 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCC--Cccc--cCCCC--CCCChHH
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAF--SETG--QLWGS--PLYDWKA 357 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~F--s~~G--Q~WG~--P~y~w~~ 357 (522)
++++++.+.|+++||++|.|+-+ ++-+ +.-.....|... | -.+|.+| +..| .+|.. +.+|.+.
T Consensus 242 ~efk~LV~~~H~~GI~VIlDvV~--NHt~-~~~~~~~~~~~~--~------~d~~~yy~~~~~g~~~~~~g~g~~ln~~~ 310 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDVVF--NHSA-ELDLDGPTLSLR--G------IDNRSYYWIREDGDYHNWTGCGNTLNLSH 310 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcc--cCcc-CcCCCCcchhcc--c------CCCccceEECCCCCcCCCCCccCcccCCC
Confidence 47889999999999999999986 2222 110000111110 0 0122322 2222 12321 2333322
Q ss_pred HHHhchHHHHHHHHHHhh--hcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHHHHHHH--HcCCceEEecc--
Q 009906 358 MEKDGFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFR--SVGNINIIAED-- 431 (522)
Q Consensus 358 l~~~gY~ww~~rlr~~~~--~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll~ale~--~r~~~~vIgED-- 431 (522)
-. =-+..++-++.-++ +.|++|+|.+--+-| + . .+.+. ..++.+|.. ..+++.+|||.
T Consensus 311 p~--Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~------~-----~-~~~~~--~~~~~ai~~d~vl~~~~ligE~Wd 374 (658)
T PRK03705 311 PA--VVDWAIDCLRYWVETCHVDGFRFDLATVLGR------T-----P-EFRQD--APLFTAIQNDPVLSQVKLIAEPWD 374 (658)
T ss_pred HH--HHHHHHHHHHHHHHHhCCCEEEEEcHhhhCc------C-----c-ccchh--hHHHHHHhhCccccceEEEEeccc
Confidence 11 11445566666665 689999998765544 0 0 12221 346777765 45689999994
Q ss_pred cCC-------CC-------HHHHHHHHHhCCCC-ceEeeec--cCCCCCCCCCCCCCCCCcEEecCcCchhhHHHHH
Q 009906 432 LGV-------IT-------EDVVQLRKSIGAPG-MAVLQFG--FGSDSKNPHLPHNHERNQVVYTGTHDNDTVKILY 491 (522)
Q Consensus 432 LG~-------Vp-------~~Vr~~l~~~g~~G-~~Vl~Fe--~~~~~~~~~~P~~~~~~~va~~~THD~ptl~Gww 491 (522)
+|. .| +..|+.++.+=.-| ..+-.|. ..+....+....+.+..+|-|++.||+-|+.-=.
T Consensus 375 ~~~~~~~~g~~~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~ 451 (658)
T PRK03705 375 IGPGGYQVGNFPPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCV 451 (658)
T ss_pred CCCChhhhcCCCcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHH
Confidence 431 22 12333333321101 0011121 1111111111122456789999999999998744
No 22
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=94.73 E-value=0.42 Score=55.20 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCCchhhhcc----------ccccccccCCCCceeecCCCCCCCccccCCCCCCC
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWAN----------KKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLY 353 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~----------~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y 353 (522)
+.++++.+.|+++||+||.|+.+ ++-+.+-... +..|..+.+ -+..+.+ +..||+ .+
T Consensus 245 ~efk~LV~~~H~~GI~VIlDvV~--NHt~~~~~~~~~~~~~~~d~~~yy~~~~~--------~~~~~~~--~~g~gn-~l 311 (688)
T TIGR02100 245 AEFKTMVRALHDAGIEVILDVVY--NHTAEGNELGPTLSFRGIDNASYYRLQPD--------DKRYYIN--DTGTGN-TL 311 (688)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--CCccCcCCCCCcccccCCCCCcceEecCC--------CCceecC--CCCccc-cc
Confidence 46888999999999999999986 3322221111 122222110 0011111 122332 23
Q ss_pred ChHHHHHhchHHHHHHHHHHhh--hcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHHHHHHH--HcCCceEEe
Q 009906 354 DWKAMEKDGFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFR--SVGNINIIA 429 (522)
Q Consensus 354 ~w~~l~~~gY~ww~~rlr~~~~--~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll~ale~--~r~~~~vIg 429 (522)
|.+.-.= -+..++-++.-++ +.|++|+|-+-.+.+-+ .+ + .....++.+|.+ ..+++.+||
T Consensus 312 n~~~p~v--r~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~---~~--------~--~~~~~~~~~i~~d~~~~~~~lig 376 (688)
T TIGR02100 312 NLSHPRV--LQMVMDSLRYWVTEMHVDGFRFDLATTLGREL---YG--------F--DMLSGFFTAIRQDPVLAQVKLIA 376 (688)
T ss_pred cCCCHHH--HHHHHHHHHHHHHHcCCcEEEEechhhhcccc---CC--------C--cccHHHHHHHHhCcccCCeEEEE
Confidence 3322110 1345555666554 67899999887765531 11 1 013457777776 456799999
Q ss_pred c--ccC
Q 009906 430 E--DLG 433 (522)
Q Consensus 430 E--DLG 433 (522)
| |.|
T Consensus 377 E~W~~~ 382 (688)
T TIGR02100 377 EPWDIG 382 (688)
T ss_pred eeecCC
Confidence 9 554
No 23
>smart00642 Aamy Alpha-amylase domain.
Probab=94.67 E-value=0.086 Score=50.05 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=53.0
Q ss_pred EecCccCCCCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhh
Q 009906 94 LHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (522)
Q Consensus 94 ~~l~SLr~~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~ 165 (522)
++-+.-...-|.|||..++ +-++.++++|.+.|+|+|++..... ....+.|.+.+-+.+||-|=+.+++.
T Consensus 4 ~~~F~~~~~~~~G~~~gi~-~~l~yl~~lG~~~I~l~Pi~~~~~~-~~~~~gY~~~d~~~i~~~~Gt~~d~~ 73 (166)
T smart00642 4 PDRFADGNGDGGGDLQGII-EKLDYLKDLGVTAIWLSPIFESPQG-YPSYHGYDISDYKQIDPRFGTMEDFK 73 (166)
T ss_pred eccccCCCCCCCcCHHHHH-HHHHHHHHCCCCEEEECcceeCCCC-CCCCCCcCccccCCCCcccCCHHHHH
Confidence 3333333456799999987 6678999999999999999876321 12568899999999999887766654
No 24
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=93.70 E-value=0.73 Score=50.73 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=33.5
Q ss_pred eeEEEEecCccCCCCCCccchHHHHHHHHHHHHhCCCeeeEccCCC
Q 009906 89 RAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVP 134 (522)
Q Consensus 89 ~~Gi~~~l~SLr~~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~ 134 (522)
+.||++|.+-=.+.-|=-.+..+. +=++.++++|++.|.|+|++.
T Consensus 2 ~~~~~~q~f~w~~~~~~~~~~~I~-~kldyl~~LGvtaIwl~P~~~ 46 (479)
T PRK09441 2 RNGTMMQYFEWYLPNDGKLWNRLA-ERAPELAEAGITAVWLPPAYK 46 (479)
T ss_pred CCceEEEEEEeccCCCccHHHHHH-HHHHHHHHcCCCEEEeCCCcc
Confidence 467899988655554423344565 556999999999999999875
No 25
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=92.34 E-value=0.8 Score=55.47 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCeEEeeccc
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPI 306 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpv 306 (522)
+.++++.+.|+++||++|.|+-+
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEeccc
Confidence 35788899999999999999975
No 26
>PLN02361 alpha-amylase
Probab=91.56 E-value=1.6 Score=47.39 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCeEEeeccc
Q 009906 285 QWQKVRNYAQMKGISIMGDMPI 306 (522)
Q Consensus 285 Ql~~~~~~A~~~Gi~L~gDLpv 306 (522)
+++++.+.|+++||++|.|+.+
T Consensus 77 el~~li~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 77 LLKSLLRKMKQYNVRAMADIVI 98 (401)
T ss_pred HHHHHHHHHHHcCCEEEEEEcc
Confidence 4788899999999999999996
No 27
>PLN00196 alpha-amylase; Provisional
Probab=89.90 E-value=4.3 Score=44.40 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=32.9
Q ss_pred eEEEEecCccCC-CCCCccchHHHHHHHHHHHHhCCCeeeEccCCC
Q 009906 90 AGVLLHPTSFRG-PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVP 134 (522)
Q Consensus 90 ~Gi~~~l~SLr~-~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~ 134 (522)
.+|++|-|--.+ +-.-|++.-+. +=++.++++|.+.|.|+|+..
T Consensus 24 ~~v~~Q~F~W~~~~~~gg~~~~i~-~kldyL~~LGvtaIWL~P~~~ 68 (428)
T PLN00196 24 GQVLFQGFNWESWKQNGGWYNFLM-GKVDDIAAAGITHVWLPPPSH 68 (428)
T ss_pred CCEEEEeeccCCCCCCCcCHHHHH-HHHHHHHHcCCCEEEeCCCCC
Confidence 468888876543 22226888775 778999999999999999753
No 28
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=88.75 E-value=0.7 Score=51.83 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=50.7
Q ss_pred CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhh
Q 009906 102 PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (522)
Q Consensus 102 ~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~ 165 (522)
.-|+|||..+. .-++.++++|.+.|.|+|+++. +...++|.+..=+.+||-|=+.+++.
T Consensus 20 ~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~----~~~~~gY~~~d~~~id~~~Gt~~~~~ 78 (543)
T TIGR02403 20 GDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVS----PQKDNGYDVSDYYAINPLFGTMADFE 78 (543)
T ss_pred CCCccCHHHHH-HhHHHHHHcCCCEEEECCcccC----CCCCCCCCccccCccCcccCCHHHHH
Confidence 46899999986 6779999999999999999985 34568999999999999998777664
No 29
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=87.52 E-value=5.2 Score=49.30 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccc
Q 009906 245 SWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPI 306 (522)
Q Consensus 245 ~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQwl~~~Ql~~~~~~A~~~Gi~L~gDLpv 306 (522)
.|-=+|..+..+++.--. + -.+.++++.+.|+++||+||.|+-+
T Consensus 226 yWGY~~~~yfa~dp~yg~-------~-----------~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 226 YWGYNTVAFLAPDPRLAP-------G-----------GEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred cCCCCCCCCCCcChhhcc-------C-----------cHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 355567777777653110 0 1356889999999999999999986
No 30
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=86.94 E-value=2.3 Score=39.10 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHH
Q 009906 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSW 365 (522)
Q Consensus 286 l~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~w 365 (522)
+.++.+.|+++||.++.-+.++++...++ .||+-+..+++|.| . ..+.+...| |....+|=... +-
T Consensus 46 lge~v~a~h~~Girv~ay~~~~~d~~~~~--~HPeW~~~~~~G~~---~--~~~~~~~~~--~~~~c~ns~Y~-----e~ 111 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFSWDEDAAE--RHPEWFVRDADGRP---M--RGERFGYPG--WYTCCLNSPYR-----EF 111 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeeecChHHHH--hCCceeeECCCCCC---c--CCCCcCCCC--ceecCCCccHH-----HH
Confidence 46677889999999999999997777776 79999999988876 1 112222223 66666664333 35
Q ss_pred HHHHHHHHhhhc
Q 009906 366 WIHRIRRARDLY 377 (522)
Q Consensus 366 w~~rlr~~~~~~ 377 (522)
..+.|+.+++.|
T Consensus 112 ~~~~i~Ei~~~y 123 (132)
T PF14871_consen 112 LLEQIREILDRY 123 (132)
T ss_pred HHHHHHHHHHcC
Confidence 667777777766
No 31
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=86.21 E-value=4.9 Score=45.00 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=28.6
Q ss_pred CCCccchHHHHHHHHHHHHhCCCeeeEccCCCC
Q 009906 103 YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPP 135 (522)
Q Consensus 103 ~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~ 135 (522)
-|+|||..+. +-++.+++.|++.|.|+|+.+.
T Consensus 22 ~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~ 53 (539)
T TIGR02456 22 DGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQS 53 (539)
T ss_pred CCccCHHHHH-HhHHHHHHCCCCEEEECCCcCC
Confidence 5799999986 7789999999999999999863
No 32
>PLN03244 alpha-amylase; Provisional
Probab=86.16 E-value=4.4 Score=47.48 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCcc----ccCCCCCCCChHHH
Q 009906 283 QRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSET----GQLWGSPLYDWKAM 358 (522)
Q Consensus 283 ~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~----GQ~WG~P~y~w~~l 358 (522)
-+.++++.+.|+++||++|.|+-. ++-+.|..-....|. |.|-.+|... -+.||...+|-..-
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~--NH~~~d~~~GL~~fD-----------Gt~~~Yf~~~~~g~~~~WGs~~fnyg~~ 506 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVH--SYAAADEMVGLSLFD-----------GSNDCYFHTGKRGHHKHWGTRMFKYGDL 506 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecC--ccCCCccccchhhcC-----------CCccceeccCCCCccCCCCCceecCCCH
Confidence 467999999999999999999864 333444321122232 2332344432 24688766664422
Q ss_pred HHhchHHHHHHHHHHhh--hcCeeeeccccccc-eeeeeeCCCC---CCCCCceeeCChHHHHH----HHHHHcCCceEE
Q 009906 359 EKDGFSWWIHRIRRARD--LYDEFRIDHFRGFA-GFWAVPSEAK---VAMDGRWKVGPGKSLFD----AIFRSVGNINII 428 (522)
Q Consensus 359 ~~~gY~ww~~rlr~~~~--~~g~lRIDH~lGlf-RlW~IP~g~~---ta~~G~yv~~p~~~ll~----ale~~r~~~~vI 428 (522)
+ --+..++-++.-++ ++|++|+|.|-... .=+-+ .+-. .-..+.++-...-.+|. .|.+..+++..|
T Consensus 507 E--Vr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itI 583 (872)
T PLN03244 507 D--VLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITI 583 (872)
T ss_pred H--HHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEE
Confidence 1 11445555555443 56889999883321 00111 0000 00011222222223332 456677899999
Q ss_pred ecccCCCCH
Q 009906 429 AEDLGVITE 437 (522)
Q Consensus 429 gEDLG~Vp~ 437 (522)
|||.-..|.
T Consensus 584 AEDsS~~P~ 592 (872)
T PLN03244 584 AEDATYYPG 592 (872)
T ss_pred EEcCCCCcC
Confidence 999865443
No 33
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=85.97 E-value=9.5 Score=45.56 Aligned_cols=22 Identities=9% Similarity=0.298 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCeEEeeccc
Q 009906 285 QWQKVRNYAQMKGISIMGDMPI 306 (522)
Q Consensus 285 Ql~~~~~~A~~~Gi~L~gDLpv 306 (522)
.++++.+.|+++||.+|-|+-+
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVy 426 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVY 426 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeec
Confidence 5677788999999999999874
No 34
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=83.23 E-value=2 Score=48.31 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=49.7
Q ss_pred CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhhh
Q 009906 102 PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVK 166 (522)
Q Consensus 102 ~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~e 166 (522)
.-|+|||..+. +-++.++++|++.|.|+|+.+. +.....|.+..=+.+||-|=+.+++.+
T Consensus 26 ~~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~----~~~~~gY~~~d~~~id~~~Gt~~d~~~ 85 (551)
T PRK10933 26 GSGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVS----PQVDNGYDVANYTAIDPTYGTLDDFDE 85 (551)
T ss_pred CCCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCC----CCCCCCCCcccCCCcCcccCCHHHHHH
Confidence 35799999876 6789999999999999999864 344578999998899999988776653
No 35
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=82.48 E-value=2.1 Score=47.93 Aligned_cols=56 Identities=13% Similarity=0.008 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhh
Q 009906 108 FGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (522)
Q Consensus 108 fgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~ 165 (522)
-||+. .+++.+--...--+..+=|.|..+ .+.....|.+..=+.+||-|=+.+++.
T Consensus 24 ~Gdl~-gi~~~Ldyl~~LGv~~i~L~Pi~~-~~~~~~gY~~~dy~~vd~~~Gt~~df~ 79 (539)
T TIGR02456 24 IGDFP-GLTSKLDYLKWLGVDALWLLPFFQ-SPLRDDGYDVSDYRAILPEFGTIDDFK 79 (539)
T ss_pred ccCHH-HHHHhHHHHHHCCCCEEEECCCcC-CCCCCCCCCcccccccChhhCCHHHHH
Confidence 67874 777765555442222222355432 223356888888778888776665553
No 36
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=81.50 E-value=6.8 Score=44.09 Aligned_cols=115 Identities=13% Similarity=0.232 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCc-cccCCCCCCCChHHH-HHhc
Q 009906 285 QWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSE-TGQLWGSPLYDWKAM-EKDG 362 (522)
Q Consensus 285 Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~-~GQ~WG~P~y~w~~l-~~~g 362 (522)
+++++.+.|+++||+||-|+.+ ++-+.+- ..+ + .. +| +|+. ....||. .+|.+.- ...-
T Consensus 161 e~k~lV~~aH~~Gi~VilD~V~--NH~~~~~----~~~--~-------~~-~~--y~~~~~~~~wg~-~~n~~~~~~~~v 221 (542)
T TIGR02402 161 DLKALVDAAHGLGLGVILDVVY--NHFGPEG----NYL--P-------RY-AP--YFTDRYSTPWGA-AINFDGPGSDEV 221 (542)
T ss_pred HHHHHHHHHHHCCCEEEEEEcc--CCCCCcc----ccc--c-------cc-Cc--cccCCCCCCCCC-ccccCCCcHHHH
Confidence 5788889999999999999986 3322220 011 0 01 12 5543 2345664 3444321 0011
Q ss_pred hHHHHHHHHHHhh--hcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHHH----HHHHHcCC---ceEEecccC
Q 009906 363 FSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFD----AIFRSVGN---INIIAEDLG 433 (522)
Q Consensus 363 Y~ww~~rlr~~~~--~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll~----ale~~r~~---~~vIgEDLG 433 (522)
-+.+++-++.-++ +.|++|+|.+-.+.+ . ...+++. ++.+..++ +.+|||+..
T Consensus 222 r~~i~~~~~~W~~e~~iDGfR~D~~~~~~~------~------------~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~ 283 (542)
T TIGR02402 222 RRYILDNALYWLREYHFDGLRLDAVHAIAD------T------------SAKHILEELAREVHELAAELRPVHLIAESDL 283 (542)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeCHHHhcc------c------------cHHHHHHHHHHHHHHHCCCCceEEEEEecCC
Confidence 1455666666664 788999997655432 1 1134443 45555666 899999864
Q ss_pred CCC
Q 009906 434 VIT 436 (522)
Q Consensus 434 ~Vp 436 (522)
..|
T Consensus 284 ~~~ 286 (542)
T TIGR02402 284 NDP 286 (542)
T ss_pred CCC
Confidence 333
No 37
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=81.00 E-value=12 Score=42.01 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCCchh
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSAD 314 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaD 314 (522)
++++++.+.|+++||.||-|+.+ ++-|.|
T Consensus 75 ~~~~~lv~~ah~~gi~vilD~v~--NH~~~~ 103 (543)
T TIGR02403 75 ADFEELVSEAKKRNIKIMLDMVF--NHTSTE 103 (543)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--cccccc
Confidence 57889999999999999999986 444443
No 38
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=80.05 E-value=1.5 Score=43.45 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhh
Q 009906 106 GDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (522)
Q Consensus 106 GDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~ 165 (522)
|||..+. +=++.++++|.+.|.|+|+... +.....|.+..=+.+||-|=+.+++.
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~----~~~~~gY~~~d~~~vd~~~Gt~~d~~ 55 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFES----PNGYHGYDPSDYYAVDPRFGTMEDFK 55 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EES----SSSTTTTSESEEEEESTTTBHHHHHH
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccc----ccccccccceeeeccccccchhhhhh
Confidence 8999986 5679999999999999999884 23678899999889999886655543
No 39
>PRK12568 glycogen branching enzyme; Provisional
Probab=77.90 E-value=14 Score=43.32 Aligned_cols=133 Identities=15% Similarity=0.223 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhch
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGF 363 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY 363 (522)
+.++++.+.|+++||++|-|+.. ++-+.|.+.. ..|. |.+...- +|.-....++|+.-.||..+-+= -
T Consensus 319 ~dfk~lV~~~H~~Gi~VIlD~V~--nH~~~d~~~l-~~fd----g~~~Ye~---~d~~~g~~~~W~~~~~N~~~peV--r 386 (730)
T PRK12568 319 DGFAQFVDACHRAGIGVILDWVS--AHFPDDAHGL-AQFD----GAALYEH---ADPREGMHRDWNTLIYNYGRPEV--T 386 (730)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--ccCCcccccc-ccCC----Ccccccc---CCCcCCccCCCCCeecccCCHHH--H
Confidence 56888999999999999999985 3333332211 1121 1110100 11111234578765555554321 2
Q ss_pred HHHHHHHHHHhh--hcCeeeeccccccc-eeeeeeCCCCCCCCCceeeC--------ChHHHHH----HHHHHcCCceEE
Q 009906 364 SWWIHRIRRARD--LYDEFRIDHFRGFA-GFWAVPSEAKVAMDGRWKVG--------PGKSLFD----AIFRSVGNINII 428 (522)
Q Consensus 364 ~ww~~rlr~~~~--~~g~lRIDH~lGlf-RlW~IP~g~~ta~~G~yv~~--------p~~~ll~----ale~~r~~~~vI 428 (522)
+..++-++.-++ +.|++|+|.+-... +=+ + -.+|.|++. -..++++ +|.+..+++.+|
T Consensus 387 ~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~------~-r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~I 459 (730)
T PRK12568 387 AYLLGSALEWIEHYHLDGLRVDAVASMLYRDY------G-RAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTI 459 (730)
T ss_pred HHHHHHHHHHHHHhCceEEEEcCHhHhhhhcc------c-cccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 334555555553 68999999775432 111 0 113444321 1234553 566788999999
Q ss_pred ecccCCC
Q 009906 429 AEDLGVI 435 (522)
Q Consensus 429 gEDLG~V 435 (522)
||+-..-
T Consensus 460 AEest~~ 466 (730)
T PRK12568 460 AEESTAW 466 (730)
T ss_pred EEcCCCC
Confidence 9986533
No 40
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=77.27 E-value=3.9 Score=46.01 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=45.5
Q ss_pred CccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhh
Q 009906 105 IGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (522)
Q Consensus 105 IGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~ 165 (522)
-|||..++ +-++.++++|.+.|+|+|+++.. ......|.+..-++.+|-|=.++++.
T Consensus 107 ~G~~~gi~-~~l~yl~~LGv~~i~L~Pi~~~~---~~~~~GY~~~~~~~~~~~~G~~~e~k 163 (542)
T TIGR02402 107 EGTFDAAI-EKLPYLADLGITAIELMPVAQFP---GTRGWGYDGVLPYAPHNAYGGPDDLK 163 (542)
T ss_pred CCCHHHHH-HhhHHHHHcCCCEEEeCccccCC---CCCCCCCCccCccccccccCCHHHHH
Confidence 58999987 55699999999999999997642 12456789988888999887776654
No 41
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=76.43 E-value=0.42 Score=53.23 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=80.3
Q ss_pred eEEeeccccccCCchhhhccccc--cccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHH-----HH
Q 009906 299 SIMGDMPIYVGYHSADVWANKKH--FLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHR-----IR 371 (522)
Q Consensus 299 ~L~gDLpvgV~~dsaDvWa~~~~--F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~~r-----lr 371 (522)
-...+-.+..++...|+++.++. |..++ ..+++|+..+.+.++|..+.+.+..+-+..|++|+++ .-
T Consensus 70 PYs~~S~~a~N~~~Id~~~l~e~~~~~~~~------~~~~l~~~~~~~~vdy~~v~~~K~~~L~~~~~~f~~~~~~~~~f 143 (520)
T COG1640 70 PYSPSSRRALNPLYIDVEALPEFQDFLLDK------DLQALPQLRALDWVDYAKVTALKRKALEKAFANFKKRKEREKDF 143 (520)
T ss_pred CCCchhhhccCceeecHHHhhhhhhhccHH------HHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34455667788888999999999 77764 6999999999999999999999999999999999999 55
Q ss_pred HHhhhcCeeeecccccccee--------eeeeCC
Q 009906 372 RARDLYDEFRIDHFRGFAGF--------WAVPSE 397 (522)
Q Consensus 372 ~~~~~~g~lRIDH~lGlfRl--------W~IP~g 397 (522)
..+....+.++||+-.|+++ |-....
T Consensus 144 ~~F~~~~~~wL~d~A~F~Al~e~~~~~~W~~Wp~ 177 (520)
T COG1640 144 AAFCQEEGYWLDDYALFMALKEHFHAAGWQVWPD 177 (520)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhcccccCCCCh
Confidence 56667799999999999999 877654
No 42
>PLN02784 alpha-amylase
Probab=76.00 E-value=37 Score=40.47 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHcCCeEEeeccc
Q 009906 282 FQRQWQKVRNYAQMKGISIMGDMPI 306 (522)
Q Consensus 282 ~~~Ql~~~~~~A~~~Gi~L~gDLpv 306 (522)
-..+|+++.+.|+++||++|.|+-+
T Consensus 566 T~~ELk~LI~a~H~~GIkVIlDiVi 590 (894)
T PLN02784 566 TIDELKDLVKSFHEVGIKVLGDAVL 590 (894)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3578999999999999999999985
No 43
>PRK12568 glycogen branching enzyme; Provisional
Probab=73.99 E-value=6.9 Score=45.69 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=44.9
Q ss_pred CCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhhh
Q 009906 104 GIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVK 166 (522)
Q Consensus 104 GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~e 166 (522)
+.++|..++.++++.++++|.+.|+|+||..... ...-=|.|..-++.+|-|=+++++.+
T Consensus 264 ~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~---~~~wGY~~~~~~a~~~~~G~~~dfk~ 323 (730)
T PRK12568 264 QPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPF---GGSWGYQPLGLYAPTARHGSPDGFAQ 323 (730)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEECccccCCC---CCCCCCCCCcCCccCcccCCHHHHHH
Confidence 4779999998899999999999999999965310 11224666666777777777777643
No 44
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=71.89 E-value=9.9 Score=44.94 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=26.3
Q ss_pred CccchHHHHHHHHHHHHhCCCeeeEccCCCC
Q 009906 105 IGDFGAEAFRFIDWLHQAGCSVWQVLPLVPP 135 (522)
Q Consensus 105 IGDfgdla~~l~d~~~~~G~~~~qilPL~~~ 135 (522)
-|+|.++. +.++.++++|.+.|.++|+...
T Consensus 12 ~~tf~~~~-~~L~YL~~LGv~~V~lsPi~~a 41 (825)
T TIGR02401 12 GFTFDDAA-ALLPYLKSLGVSHLYLSPILTA 41 (825)
T ss_pred CCCHHHHH-HhhHHHHHcCCCEEEeCcCccC
Confidence 38999965 8999999999999999998753
No 45
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=69.64 E-value=2.7 Score=43.12 Aligned_cols=81 Identities=27% Similarity=0.359 Sum_probs=49.7
Q ss_pred cCCeEEeeccccccCCchhhhccccccc-cccCCCCceeecCCCC---CCCccccCCCCC-CCChHHHHHhchHHHHHHH
Q 009906 296 KGISIMGDMPIYVGYHSADVWANKKHFL-LNRRGFPLEVSGVPPD---AFSETGQLWGSP-LYDWKAMEKDGFSWWIHRI 370 (522)
Q Consensus 296 ~Gi~L~gDLpvgV~~dsaDvWa~~~~F~-~~~~g~p~~~~GAPPD---~Fs~~GQ~WG~P-~y~w~~l~~~gY~ww~~rl 370 (522)
+-|-|+||+= |++.--|+|.....+. .+ .+|.+|. .|. .=.++|.- .++--.=+...|.||--|.
T Consensus 141 ~~~vl~GD~N--Iap~~iDv~~~~~~~~n~~-------~~~f~~eeR~~~~-~ll~~G~~D~~R~~~p~~~~YTwW~YR~ 210 (261)
T COG0708 141 KPVVLCGDFN--IAPEEIDVANPKKRWLNEG-------NSGFLPEERAWFR-RLLNAGFVDTFRLFHPEPEKYTWWDYRA 210 (261)
T ss_pred CCEEEecccc--cCCchhcccCchhhhhcCC-------CCCCCHHHHHHHH-HHHHcchhhhhHhhCCCCCccccccccc
Confidence 5588999987 5889999996633332 33 5777766 111 11123311 1111111123499999999
Q ss_pred HHHhhhcCeeeeccccc
Q 009906 371 RRARDLYDEFRIDHFRG 387 (522)
Q Consensus 371 r~~~~~~g~lRIDH~lG 387 (522)
+..-+. =+.||||++.
T Consensus 211 ~~~~~n-~G~RID~~l~ 226 (261)
T COG0708 211 NAARRN-RGWRIDYILV 226 (261)
T ss_pred chhhhc-CceeEEEEEe
Confidence 866666 7899999975
No 46
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=68.38 E-value=60 Score=36.72 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCCch
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSA 313 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsa 313 (522)
+.++++.+.|+++||+||.|+.+ ++-|.
T Consensus 81 ~d~~~lv~~~h~~gi~vilD~V~--NH~s~ 108 (551)
T PRK10933 81 DDFDELVAQAKSRGIRIILDMVF--NHTST 108 (551)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC--CCccC
Confidence 45888999999999999999985 44443
No 47
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=64.01 E-value=11 Score=40.64 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhhh
Q 009906 102 PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVK 166 (522)
Q Consensus 102 ~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~e 166 (522)
..|+|||..+. +-+|.++.+|.+.|-|+|+... +...-.|....=.-.||.+-..+++.+
T Consensus 22 ~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s----~~~~~gY~~~Dy~~id~~~Gt~~d~~~ 81 (505)
T COG0366 22 YDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFES----PQADHGYDVSDYTKVDPHFGTEEDFKE 81 (505)
T ss_pred CCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCC----CccCCCccccchhhcCcccCCHHHHHH
Confidence 47899999975 8889999999999999999885 356677888888888998887776653
No 48
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=54.70 E-value=16 Score=40.03 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=46.1
Q ss_pred CCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccCh
Q 009906 103 YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISL 161 (522)
Q Consensus 103 ~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~l 161 (522)
--+|.|.+-- +.++-+++.|..+|-..||+..| ...||||=..-..+||.+...
T Consensus 16 k~~G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G----~S~S~YSI~Dql~~~~~~~~~ 69 (423)
T PF14701_consen 16 KWMGPFSDWE-KHLKVISEKGYNMIHFTPLQERG----ESNSPYSIYDQLKFDPDFFPP 69 (423)
T ss_pred hhcCCHhHHH-HHHHHHHHcCCcEEEecccccCC----CCCCCccccchhhcChhhcCC
Confidence 4479999875 77799999999999999999985 457999999999999987654
No 49
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=52.39 E-value=24 Score=40.66 Aligned_cols=50 Identities=18% Similarity=0.414 Sum_probs=34.6
Q ss_pred CccchHHHHHHHHHHHHhCCCeeeEccCCCC-CCCCC--CCCCCCCccccccccc
Q 009906 105 IGDFGAEAFRFIDWLHQAGCSVWQVLPLVPP-GRKAN--EEGSPYSGQDANCGNT 156 (522)
Q Consensus 105 IGDfgdla~~l~d~~~~~G~~~~qilPL~~~-~~~~~--~~~SPYsp~Sr~alNP 156 (522)
-|.+. +|.++++.++++|.+.|+|+||..- +..++ ..--+|+|.|| +++|
T Consensus 161 ~~~~e-~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sr-yGtP 213 (628)
T COG0296 161 LGYFE-LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSR-YGTP 213 (628)
T ss_pred cCHHH-HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecccccc-CCCH
Confidence 34444 6789999999999999999999542 11122 24567888775 3544
No 50
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.19 E-value=43 Score=34.68 Aligned_cols=84 Identities=13% Similarity=0.309 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCeEEeeccccccCCchhhhc---cccccccccCC-CCceeecCCCCCCCccccCCCCCCCChHHHHHhc
Q 009906 287 QKVRNYAQMKGISIMGDMPIYVGYHSADVWA---NKKHFLLNRRG-FPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDG 362 (522)
Q Consensus 287 ~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa---~~~~F~~~~~g-~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~g 362 (522)
+++.+..+++|+.++-=+--+|..++. ... +.+.|..+.+| .| -.|.-|+....-++-.....
T Consensus 73 ~~mi~~l~~~G~k~~l~i~P~i~~~s~-~~~e~~~~g~~vk~~~g~~~------------~~~~~w~g~~~~~Dftnp~a 139 (303)
T cd06592 73 KGMIDQLHDLGFRVTLWVHPFINTDSE-NFREAVEKGYLVSEPSGDIP------------ALTRWWNGTAAVLDFTNPEA 139 (303)
T ss_pred HHHHHHHHHCCCeEEEEECCeeCCCCH-HHHhhhhCCeEEECCCCCCC------------cccceecCCcceEeCCCHHH
Confidence 344556677999877777777776652 232 24555555443 11 11223332222233333345
Q ss_pred hHHHHHHHHHHhh--hcCeeeec
Q 009906 363 FSWWIHRIRRARD--LYDEFRID 383 (522)
Q Consensus 363 Y~ww~~rlr~~~~--~~g~lRID 383 (522)
.+||.+.++..+. -++++.+|
T Consensus 140 ~~w~~~~~~~~~~~~Gvdg~w~D 162 (303)
T cd06592 140 VDWFLSRLKSLQEKYGIDSFKFD 162 (303)
T ss_pred HHHHHHHHHHHHHHhCCcEEEeC
Confidence 6899999998883 33344444
No 51
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=45.29 E-value=58 Score=36.87 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhcccccccccc--------CCCCc-eeecCCCCCCC--ccccCC
Q 009906 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNR--------RGFPL-EVSGVPPDAFS--ETGQLW 348 (522)
Q Consensus 280 wl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~--------~g~p~-~~~GAPPD~Fs--~~GQ~W 348 (522)
|-..+.+.++-..++++||.||.|+++=-..+ +--|.....+.... +|.-. .....||-.+- .-|.+|
T Consensus 84 fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~-~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~ 162 (545)
T KOG0471|consen 84 FGTEEDFKELILAMHKLGIKIIADLVINHRSD-EVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAW 162 (545)
T ss_pred ccHHHHHHHHHHHHhhcceEEEEeeccccCCc-cccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccC
Confidence 56778889999999999999999999732221 11233332222110 11000 11233433211 012222
Q ss_pred ----------------CCCCCChHHHHHhchHHHHHHHHHH--hhhcCeeeecccccccee
Q 009906 349 ----------------GSPLYDWKAMEKDGFSWWIHRIRRA--RDLYDEFRIDHFRGFAGF 391 (522)
Q Consensus 349 ----------------G~P~y~w~~l~~~gY~ww~~rlr~~--~~~~g~lRIDH~lGlfRl 391 (522)
++|..|++.-+= -+-+.+.++.. -..++++|||++.+..--
T Consensus 163 ~~~e~~~~~~l~~~~~~~pDln~~n~~V--~~~~~~~l~~~~~~~gvdGfRiD~v~~~~~~ 221 (545)
T KOG0471|consen 163 PFDEGRQKYYLGQFAVLQPDLNYENPDV--RKAIKEWLRDFWLEKGVDGFRIDAVKGYAGE 221 (545)
T ss_pred cccccccceeccchhhcCCCCCCCCHHH--HHHHHHHHHHHHhhcCCCeEEEEcccccccc
Confidence 345555554321 34455666522 246889999999998843
No 52
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=43.00 E-value=8 Score=37.43 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhcCeeeeccccc
Q 009906 366 WIHRIRRARDLYDEFRIDHFRG 387 (522)
Q Consensus 366 w~~rlr~~~~~~g~lRIDH~lG 387 (522)
.-+.|+..+.--.++||||++|
T Consensus 156 Ln~~l~~~f~E~qIyRIDHYLG 177 (183)
T PF00479_consen 156 LNDQLAEYFDEEQIYRIDHYLG 177 (183)
T ss_dssp HHHHHCTTS-GGGEEE--GGGG
T ss_pred HHHHHHHhCCHHHeeehhhhcc
Confidence 4456666777778999999998
No 53
>PRK09505 malS alpha-amylase; Reviewed
Probab=42.95 E-value=81 Score=36.81 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCeEEeeccccccCCchhh------hccccccccccCCCCceeecCCCCCCCc-------------
Q 009906 283 QRQWQKVRNYAQMKGISIMGDMPIYVGYHSADV------WANKKHFLLNRRGFPLEVSGVPPDAFSE------------- 343 (522)
Q Consensus 283 ~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDv------Wa~~~~F~~~~~g~p~~~~GAPPD~Fs~------------- 343 (522)
.++++++.+.|+++||.||-|+- +++-|.+. |+.+++|..+.+ .....|..|+.
T Consensus 291 ~~dfk~Lv~~aH~~Gi~VilD~V--~NH~~~~~~~d~~~~~f~~~~~~~~~-----~~~~~~~~~~~w~~~~~~~~~~~~ 363 (683)
T PRK09505 291 EADLRTLVDEAHQRGIRILFDVV--MNHTGYATLADMQEFQFGALYLSGDE-----NKKTLGERWSDWQPAAGQNWHSFN 363 (683)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC--cCCCcccccccccccchhhhhhhccc-----cccccCcccccccccccccccccc
Q ss_pred --------------cccCC---------------------CCCCCChH-------------------------HHHHhch
Q 009906 344 --------------TGQLW---------------------GSPLYDWK-------------------------AMEKDGF 363 (522)
Q Consensus 344 --------------~GQ~W---------------------G~P~y~w~-------------------------~l~~~gY 363 (522)
.|.+| ++|-+|-+ .+++.=.
T Consensus 364 ~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~ 443 (683)
T PRK09505 364 DYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLT 443 (683)
T ss_pred cccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHH
Q ss_pred HHHHHHHHHHhhhcCeeeeccc
Q 009906 364 SWWIHRIRRARDLYDEFRIDHF 385 (522)
Q Consensus 364 ~ww~~rlr~~~~~~g~lRIDH~ 385 (522)
.|-+.=|+. .-.|++|||.+
T Consensus 444 ~~ik~Wv~e--~GIDGfRlDaa 463 (683)
T PRK09505 444 HWLSQWVRD--YGIDGFRVDTA 463 (683)
T ss_pred HHHHHHHHh--cCCCEEEEech
No 54
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=42.59 E-value=33 Score=25.60 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCChHHHHHhchHHHHHHHHHHhhhcCeeee
Q 009906 350 SPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRI 382 (522)
Q Consensus 350 ~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRI 382 (522)
.|+|.|...+=.++-=|++.|+...+.||+++|
T Consensus 2 iPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KI 34 (42)
T smart00545 2 IPVFYPTMEEFKDPLAYISKIRPQAEKYGICKV 34 (42)
T ss_pred CCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEE
Confidence 577888888878899999999999999999998
No 55
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=40.82 E-value=80 Score=36.49 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchH
Q 009906 285 QWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFS 364 (522)
Q Consensus 285 Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ 364 (522)
+++++.+.|+++||++|-|.=- +.-+.|-.... .|.-. + .--=.|.++-..|.||.-+||=.+-+=..|
T Consensus 215 dfk~fVD~aH~~GIgViLD~V~--~HF~~d~~~L~-~fdg~----~---~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~F- 283 (628)
T COG0296 215 DFKALVDAAHQAGIGVILDWVP--NHFPPDGNYLA-RFDGT----F---LYEHEDPRRGEHTDWGTAIFNYGRNEVRNF- 283 (628)
T ss_pred HHHHHHHHHHHcCCEEEEEecC--CcCCCCcchhh-hcCCc----c---ccccCCcccccCCCcccchhccCcHHHHHH-
Confidence 4566778999999999999632 33344544331 22111 0 111123345568999999988732111111
Q ss_pred HHHHHHHHHhh--hcCeeeeccccccc
Q 009906 365 WWIHRIRRARD--LYDEFRIDHFRGFA 389 (522)
Q Consensus 365 ww~~rlr~~~~--~~g~lRIDH~lGlf 389 (522)
+.+-...=++ |+|+||+|=|-...
T Consensus 284 -ll~nal~Wl~~yHiDGlRvDAV~sml 309 (628)
T COG0296 284 -LLANALYWLEEYHIDGLRVDAVASML 309 (628)
T ss_pred -HHHHHHHHHHHhCCcceeeehhhhhh
Confidence 2222222122 67999999887765
No 56
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.61 E-value=89 Score=33.17 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhc--cccccccccCCCCceeecCCCCCCCccccCCCCCCCChHH
Q 009906 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA--NKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKA 357 (522)
Q Consensus 280 wl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa--~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~ 357 (522)
+.-.+|++++.+||+++||.||=.|-+ ++=+..|. .|++-+.+.+..+....+.+++ +.|+.
T Consensus 82 ~YT~~di~eiv~yA~~rgI~VIPEID~---PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~------------~L~~~- 145 (357)
T cd06563 82 FYTQEEIREIVAYAAERGITVIPEIDM---PGHALAALAAYPELGCTGGPGSVVSVQGVVSN------------VLCPG- 145 (357)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEecCC---chhHHHHHHhCccccCCCCCCccccccCcCCC------------ccCCC-
Confidence 346789999999999999999877664 23334443 5665544321111111222222 33333
Q ss_pred HHHhchHHHHHHHHHHhhhcC
Q 009906 358 MEKDGFSWWIHRIRRARDLYD 378 (522)
Q Consensus 358 l~~~gY~ww~~rlr~~~~~~g 378 (522)
...-|+..++.++.++..|.
T Consensus 146 -~~~t~~f~~~ll~E~~~lF~ 165 (357)
T cd06563 146 -KPETYTFLEDVLDEVAELFP 165 (357)
T ss_pred -ChhHHHHHHHHHHHHHHhCC
Confidence 24578899999999999876
No 57
>COG2904 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.18 E-value=8 Score=35.46 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCeEEee-ccccccCCchhhhccccccccccCCCCceeec
Q 009906 288 KVRNYAQMKGISIMGD-MPIYVGYHSADVWANKKHFLLNRRGFPLEVSG 335 (522)
Q Consensus 288 ~~~~~A~~~Gi~L~gD-LpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~G 335 (522)
.+-+.++...+||..+ ||+ .|+|.|.-=|+=.++++|.|-+-+|
T Consensus 31 pvpR~~nR~~LGl~~~~lpf----~G~DiW~~YElSwLn~~G~PqVaig 75 (137)
T COG2904 31 PVPRSLNRDPLGLTANNLPF----HGADIWTLYELSWLNAKGLPQVAIG 75 (137)
T ss_pred cCccccCccccccccCCCCc----cccchhhhhhhhhhccCCCceEEEE
Confidence 3456667777999999 886 7999999999999999999977776
No 58
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=39.07 E-value=46 Score=39.94 Aligned_cols=108 Identities=20% Similarity=0.332 Sum_probs=0.0
Q ss_pred CCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHHHHHHHHcCCceEEec-
Q 009906 352 LYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAE- 430 (522)
Q Consensus 352 ~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll~ale~~r~~~~vIgE- 430 (522)
||=|+.| ++-+..+.+.|+++|||...+ -|---. |-||++-..-++++-||||
T Consensus 511 PyLWq~M--------~kY~e~tAriFdG~RlDNcHs------TPlHVa------------EylLd~ARk~nPnlYVvAEL 564 (1521)
T KOG3625|consen 511 PYLWQHM--------KKYTEITARIFDGVRLDNCHS------TPLHVA------------EYLLDAARKLNPNLYVVAEL 564 (1521)
T ss_pred hHHHHHH--------HHHHHHHHHHhcceeeccCCC------CchhHH------------HHHHHHHHhcCCCeEEEeee
Q ss_pred -------------ccCCCCHHHHHHHHHhCCCCceEeeeccCCCC------CCCCCCCCCCCCcEEecCcCchhh
Q 009906 431 -------------DLGVITEDVVQLRKSIGAPGMAVLQFGFGSDS------KNPHLPHNHERNQVVYTGTHDNDT 486 (522)
Q Consensus 431 -------------DLG~Vp~~Vr~~l~~~g~~G~~Vl~Fe~~~~~------~~~~~P~~~~~~~va~~~THD~pt 486 (522)
-|| |..=+|+.+.+..-.---=|-...+|++ +.-.+-..-...++-+--|||||+
T Consensus 565 FtgSe~~DnvFVnRLG-IsSLIREAmsAwdshEqgRLVyryGG~pVGsfk~ns~R~~~~siaHaLFmD~tHDN~s 638 (1521)
T KOG3625|consen 565 FTGSEDLDNVFVNRLG-ISSLIREAMSAWDSHEQGRLVYRYGGEPVGSFKQNSLRPLMPSIAHALFMDITHDNES 638 (1521)
T ss_pred ccCCccchhhhhhhhh-HHHHHHHHHHhhchhhhceeeeeeCCeecccccccccccccCccchhhheeccCCCCC
No 59
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=38.41 E-value=21 Score=32.87 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred CCcEEecCcCchhhHHHHHHcC
Q 009906 473 RNQVVYTGTHDNDTVKILYYAV 494 (522)
Q Consensus 473 ~~~va~~~THD~ptl~Gww~~~ 494 (522)
-.||++|||||..|+.-|..++
T Consensus 88 i~Amc~tg~~~~~sL~~WI~~L 109 (126)
T PF14784_consen 88 IFAMCMTGTSDKDSLLSWIRGL 109 (126)
T ss_pred EEEEEeccCCCHHHHHHHHHHH
Confidence 3689999999999999999776
No 60
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=38.37 E-value=56 Score=41.03 Aligned_cols=62 Identities=19% Similarity=0.095 Sum_probs=50.1
Q ss_pred EEecCccC--C--CCCCccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCcccccccccccc
Q 009906 93 LLHPTSFR--G--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLI 159 (522)
Q Consensus 93 ~~~l~SLr--~--~~GIGDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI 159 (522)
.+|+.||. + +-=+|-|.+- .+-++.+++.|..+|-++||++.+ ...|||+-..=+-.||.+-
T Consensus 112 ~lPl~~i~iqTvlsK~mG~~~~w-~~~L~~ik~lGyN~IhftPI~~~G----~SnS~Ysi~Dyl~idP~~~ 177 (1464)
T TIGR01531 112 FLPLDSIALQTVLAKLLGPLSEW-EPRLRVAKEKGYNMIHFTPLQELG----GSNSCYSLYDQLQLNQHFK 177 (1464)
T ss_pred ccCcCceeeeeehhhhcCCHHHH-HHHHHHHHHcCCCEEEeCCCccCC----CCCCCccccchhhcChhhc
Confidence 45555555 1 3448999875 478899999999999999999986 3579999999999999885
No 61
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=37.42 E-value=60 Score=38.64 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=9.7
Q ss_pred CCcEEecCcCch
Q 009906 473 RNQVVYTGTHDN 484 (522)
Q Consensus 473 ~~~va~~~THD~ 484 (522)
+.+|.+|+|||+
T Consensus 508 P~~m~atsTHDt 519 (825)
T TIGR02401 508 PRSMTTTSTHDT 519 (825)
T ss_pred Cccccccccccc
Confidence 568888999985
No 62
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=37.31 E-value=27 Score=24.93 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=23.7
Q ss_pred CCCChHHHHHhchHHHHHHHHHHhhhcCeeee
Q 009906 351 PLYDWKAMEKDGFSWWIHRIRRARDLYDEFRI 382 (522)
Q Consensus 351 P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRI 382 (522)
|+|.|...+=.++--++++++...+.||+++|
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KI 32 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKI 32 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEe
Confidence 45666666667888899999999999999997
No 63
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=35.76 E-value=1e+02 Score=32.42 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhc--cccccccccCCCCceeecCCCCCCCccccCCCCCCCChHH
Q 009906 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA--NKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKA 357 (522)
Q Consensus 280 wl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa--~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~ 357 (522)
+.-.+|++++.+||+++||.||-.|-+ ++=+..|. .|++-+. |-+++.+. +-..+....|+.
T Consensus 71 ~YT~~di~elv~yA~~rgI~vIPEiD~---PGH~~a~~~~~p~l~~~----------~~~~~~~~--~~~~~~~~l~~~- 134 (329)
T cd06568 71 YYTQEDYKDIVAYAAERHITVVPEIDM---PGHTNAALAAYPELNCD----------GKAKPLYT--GIEVGFSSLDVD- 134 (329)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecCC---cHHHHHHHHhChhhccC----------CCCCcccc--ccCCCCcccCCC-
Confidence 446889999999999999999887764 23344443 4554322 21222221 111122334443
Q ss_pred HHHhchHHHHHHHHHHhhhcCe
Q 009906 358 MEKDGFSWWIHRIRRARDLYDE 379 (522)
Q Consensus 358 l~~~gY~ww~~rlr~~~~~~g~ 379 (522)
....|..-++.++.++..|..
T Consensus 135 -~~~t~~fl~~v~~E~~~~f~~ 155 (329)
T cd06568 135 -KPTTYEFVDDVFRELAALTPG 155 (329)
T ss_pred -CHHHHHHHHHHHHHHHHhCCC
Confidence 245688899999999988753
No 64
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=34.81 E-value=47 Score=41.64 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=40.7
Q ss_pred CCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCCCCCCCceeeCChHHHHHHHHHHcCCceEEecc
Q 009906 352 LYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAED 431 (522)
Q Consensus 352 ~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p~~~ll~ale~~r~~~~vIgED 431 (522)
||=|+.|+ +=.+.+.+.|+++|||..- +|+.. =+|-||++-.+.+|++-|+||=
T Consensus 489 P~LW~~M~--------~Y~~~~AkiF~G~RiDNCH------------STPlh------VaeylLd~AR~vnPnLyV~AEL 542 (1464)
T TIGR01531 489 PYLWQHMK--------EYTEMTARIFDGVRIDNCH------------STPIH------VAEYLLDAARKYNPNLYVVAEL 542 (1464)
T ss_pred HHHHHHHH--------HHHHHHHHhhcceeeeccc------------CCcHH------HHHHHHHHHhhcCCCeEEEeee
Confidence 56777764 3467888999999999864 23321 2466888888999999999974
Q ss_pred c
Q 009906 432 L 432 (522)
Q Consensus 432 L 432 (522)
+
T Consensus 543 F 543 (1464)
T TIGR01531 543 F 543 (1464)
T ss_pred c
Confidence 4
No 65
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=32.18 E-value=1.3e+02 Score=31.79 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCeEEeeccccccCCc----hhhh---ccccccccccCCCCceee-----cCCCCCCCccccCCCCCCCC
Q 009906 287 QKVRNYAQMKGISIMGDMPIYVGYHS----ADVW---ANKKHFLLNRRGFPLEVS-----GVPPDAFSETGQLWGSPLYD 354 (522)
Q Consensus 287 ~~~~~~A~~~Gi~L~gDLpvgV~~ds----aDvW---a~~~~F~~~~~g~p~~~~-----GAPPD~Fs~~GQ~WG~P~y~ 354 (522)
+++.+..+++|+.++.-+--+|..+. ..++ ...+.|..+.+|.|...- +.=||.+|
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftn------------ 136 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLN------------ 136 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCC------------
Confidence 44455566789988877777777652 2222 234667766666542111 11133332
Q ss_pred hHHHHHhchHHHHHHHHHHhhh
Q 009906 355 WKAMEKDGFSWWIHRIRRARDL 376 (522)
Q Consensus 355 w~~l~~~gY~ww~~rlr~~~~~ 376 (522)
| +..+||.+.++..+..
T Consensus 137 p-----~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 137 P-----NTQEWWTDEIKDFHDQ 153 (339)
T ss_pred H-----HHHHHHHHHHHHHHhc
Confidence 2 4568999999887753
No 66
>smart00642 Aamy Alpha-amylase domain.
Probab=32.10 E-value=48 Score=31.39 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCeEEeeccc
Q 009906 284 RQWQKVRNYAQMKGISIMGDMPI 306 (522)
Q Consensus 284 ~Ql~~~~~~A~~~Gi~L~gDLpv 306 (522)
++++++.+.|+++||.||-|+.+
T Consensus 70 ~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 70 EDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
Confidence 67889999999999999999985
No 67
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=30.82 E-value=90 Score=37.48 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhh
Q 009906 106 GDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (522)
Q Consensus 106 GDfgdla~~l~d~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~ 165 (522)
++|.++. +.++.++++|++.|.++|+.... +.....|.+..=..+||-|=..+++.
T Consensus 17 ~tf~~~~-~~l~YL~~LGis~IyLsPi~~a~---~gs~hGYdv~D~~~idp~lGt~e~f~ 72 (879)
T PRK14511 17 FTFDDAA-ELVPYFADLGVSHLYLSPILAAR---PGSTHGYDVVDHTRINPELGGEEGLR 72 (879)
T ss_pred CCHHHHH-HHhHHHHHcCCCEEEECcCccCC---CCCCCCCCcCCCCCcCCCCCCHHHHH
Confidence 7898865 89999999999999999998652 23456788888778898887766554
No 68
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=29.95 E-value=1.4e+02 Score=30.89 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhc--cccccccccCCCCceeecCCCCCCCccccCCCC--CCCCh
Q 009906 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA--NKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGS--PLYDW 355 (522)
Q Consensus 280 wl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa--~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~--P~y~w 355 (522)
+.-.+|++++.+||+++||.||-.+-+ ++=+..|. .|++-+... . |..|+. -.+|+
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~---PGH~~a~~~~~p~l~~~~~-------~----------~~~~~~~~~~l~~ 127 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDM---PGHSTAFVKSFPKLLTECY-------A----------GLKLRDVFDPLDP 127 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccc---hHHHHHHHHhCHHhccCcc-------c----------cCCCCCCCCccCC
Confidence 446789999999999999999887664 23333343 455433221 0 222222 13444
Q ss_pred HHHHHhchHHHHHHHHHHhhhcCe
Q 009906 356 KAMEKDGFSWWIHRIRRARDLYDE 379 (522)
Q Consensus 356 ~~l~~~gY~ww~~rlr~~~~~~g~ 379 (522)
. ....|+.-++.++.++..|..
T Consensus 128 ~--~~~t~~fl~~l~~e~~~lf~~ 149 (303)
T cd02742 128 T--LPKGYDFLDDLFGEIAELFPD 149 (303)
T ss_pred C--CccHHHHHHHHHHHHHHhCCC
Confidence 3 345789999999999998854
No 69
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=29.66 E-value=60 Score=37.86 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=40.9
Q ss_pred CCccchHHHHH-HHHHHHHhCCCeeeEccCCCCCCCC--C----CCCCCCCcccccccccccc
Q 009906 104 GIGDFGAEAFR-FIDWLHQAGCSVWQVLPLVPPGRKA--N----EEGSPYSGQDANCGNTLLI 159 (522)
Q Consensus 104 GIGDfgdla~~-l~d~~~~~G~~~~qilPL~~~~~~~--~----~~~SPYsp~Sr~alNPlYI 159 (522)
..|+|..++.. .++.++++|.+.|+|+|+++..... . ...--|.|..=|+.+|-|-
T Consensus 177 ~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~ 239 (688)
T TIGR02100 177 LRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYL 239 (688)
T ss_pred cccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhc
Confidence 35999987632 5899999999999999998742110 0 0123588988888998884
No 70
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=29.12 E-value=1.3e+02 Score=33.30 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=7.6
Q ss_pred cCC-eEEeecccccc
Q 009906 296 KGI-SIMGDMPIYVG 309 (522)
Q Consensus 296 ~Gi-~L~gDLpvgV~ 309 (522)
.|| |+--|.+=.|.
T Consensus 225 ~giDGfRlDavk~v~ 239 (479)
T PRK09441 225 TGFDGFRLDAVKHID 239 (479)
T ss_pred cCCCEEEEhhhcCCC
Confidence 555 55555555554
No 71
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=28.27 E-value=40 Score=39.35 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=37.0
Q ss_pred ccchHHHHHH--HHHHHHhCCCeeeEccCCCCCCCCCC------CCCCCCccccccccccccCh
Q 009906 106 GDFGAEAFRF--IDWLHQAGCSVWQVLPLVPPGRKANE------EGSPYSGQDANCGNTLLISL 161 (522)
Q Consensus 106 GDfgdla~~l--~d~~~~~G~~~~qilPL~~~~~~~~~------~~SPYsp~Sr~alNPlYI~l 161 (522)
|.|.-++ +. ++++++.|.+.||+||++.-...... ..==|.|..=|+..|-|-+=
T Consensus 195 GTy~gl~-~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~ 257 (697)
T COG1523 195 GTYLGLA-EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASN 257 (697)
T ss_pred cceehhc-cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCC
Confidence 6777766 55 99999999999999999763211100 11126677777777777643
No 72
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=28.02 E-value=26 Score=35.86 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=42.1
Q ss_pred CCCCCCChHHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCC--CCCCCCCc--eeeCChHHHHHHHHHHcC
Q 009906 348 WGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSE--AKVAMDGR--WKVGPGKSLFDAIFRSVG 423 (522)
Q Consensus 348 WG~P~y~w~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g--~~ta~~G~--yv~~p~~~ll~ale~~r~ 423 (522)
|..--+||.+.+.-+ ++.+ ||+-| .|+|.||+| ++ +..|+ |++|=+ |||..-.-+..
T Consensus 16 ~siDFanp~AVk~Ln--------KAlL--------~~fY~-v~~wdiPeg~LCP-pvPgRAdYih~la-DLL~s~~g~~~ 76 (292)
T COG3129 16 QSIDFANPLAVKALN--------KALL--------AHFYA-VRYWDIPEGFLCP-PVPGRADYIHHLA-DLLASTSGQIP 76 (292)
T ss_pred eeeccCCHHHHHHHH--------HHHH--------HHhcc-eeEecCCCCCcCC-CCCChhHHHHHHH-HHHHhcCCCCC
Confidence 444556888765433 3333 44444 379999998 33 44443 666432 34422223344
Q ss_pred CceEEecccCCCCHHHH
Q 009906 424 NINIIAEDLGVITEDVV 440 (522)
Q Consensus 424 ~~~vIgEDLG~Vp~~Vr 440 (522)
+..|++=|.||=--.+.
T Consensus 77 ~~~i~~LDIGvGAnCIY 93 (292)
T COG3129 77 GKNIRILDIGVGANCIY 93 (292)
T ss_pred cCceEEEeeccCccccc
Confidence 56789999998655443
No 73
>PRK03705 glycogen debranching enzyme; Provisional
Probab=27.51 E-value=57 Score=37.86 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=39.5
Q ss_pred ccchHHHH-HHHHHHHHhCCCeeeEccCCCCCCCCC------CCCCCCCccccccccccccC
Q 009906 106 GDFGAEAF-RFIDWLHQAGCSVWQVLPLVPPGRKAN------EEGSPYSGQDANCGNTLLIS 160 (522)
Q Consensus 106 GDfgdla~-~l~d~~~~~G~~~~qilPL~~~~~~~~------~~~SPYsp~Sr~alNPlYI~ 160 (522)
|.|..++. ..++.++++|.+.|+|+|+++...... ...--|.|..=|+.+|-|-+
T Consensus 174 Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt 235 (658)
T PRK03705 174 GTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYAS 235 (658)
T ss_pred ccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCC
Confidence 77877652 258999999999999999987531100 01225888888888888865
No 74
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.90 E-value=1.5e+02 Score=31.42 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCeEEeeccccccCCch----------hhhccccccccccCCCCcee------ecCCCCCCCccccCCCC
Q 009906 287 QKVRNYAQMKGISIMGDMPIYVGYHSA----------DVWANKKHFLLNRRGFPLEV------SGVPPDAFSETGQLWGS 350 (522)
Q Consensus 287 ~~~~~~A~~~Gi~L~gDLpvgV~~dsa----------DvWa~~~~F~~~~~g~p~~~------~GAPPD~Fs~~GQ~WG~ 350 (522)
+++.+..++.|+.++.=+=-+|+.++. +. ...++|..+.+|.|... .++-||.+|
T Consensus 88 ~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~-~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftn-------- 158 (340)
T cd06597 88 KGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYA-VAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTN-------- 158 (340)
T ss_pred HHHHHHHHHCCCEEEEEecCccccccccccccchhHHHH-HHCCEEEEcCCCCccccccccCCCceeecCCC--------
Confidence 344455666888776544444443321 11 13356666655554211 123455544
Q ss_pred CCCChHHHHHhchHHHHHHHHHHhh--hcCeeeec
Q 009906 351 PLYDWKAMEKDGFSWWIHRIRRARD--LYDEFRID 383 (522)
Q Consensus 351 P~y~w~~l~~~gY~ww~~rlr~~~~--~~g~lRID 383 (522)
|+ ..+||+++++..++ -.+++.+|
T Consensus 159 ----p~-----a~~Ww~~~~~~~~~~~Gidg~w~D 184 (340)
T cd06597 159 ----PE-----AAQWWMEKRRYLVDELGIDGFKTD 184 (340)
T ss_pred ----HH-----HHHHHHHHHHHHHHhcCCcEEEec
Confidence 33 34699999998875 34455555
No 75
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.58 E-value=1.4e+02 Score=31.35 Aligned_cols=100 Identities=18% Similarity=0.394 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhc--cccccccccCCCCceeecCCCCCCCccccCCCC--CCCCh
Q 009906 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA--NKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGS--PLYDW 355 (522)
Q Consensus 280 wl~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa--~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~--P~y~w 355 (522)
+.-.+|++++.+||+++||.||-.|-+ ++=+.+|. .|++-+. ++.+... +.||. +..|+
T Consensus 64 ~yT~~di~elv~yA~~rgI~vIPEId~---PGH~~a~~~~ypel~~~-------------~~~~~~~-~~~~~~~~~l~~ 126 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIRVVPEIDV---PGHASAIAVAYPELASG-------------PGPYVIE-RGWGVFEPLLDP 126 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEeecC---ccchHHHHHhCHHhccC-------------CCccccc-cccccCCCccCC
Confidence 457889999999999999999876664 22233343 4554322 2222111 33443 34554
Q ss_pred HHHHHhchHHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCCCCCCCceeeCC
Q 009906 356 KAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGP 410 (522)
Q Consensus 356 ~~l~~~gY~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ta~~G~yv~~p 410 (522)
.. ..-|+..++.+..++..|.. .++=|=.++ ...+.|-..|
T Consensus 127 ~~--p~t~~f~~~l~~E~~~lF~~----------~~iHiGgDE--~~~~~W~~~p 167 (311)
T cd06570 127 TN--EETYTFLDNLFGEMAELFPD----------EYFHIGGDE--VDPKQWNENP 167 (311)
T ss_pred CC--hhHHHHHHHHHHHHHHhCCC----------CceEeeccC--CCCCcccCCH
Confidence 33 45788999999999988752 344443333 3355676655
No 76
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=25.64 E-value=1.7e+02 Score=34.43 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhcCe-eeeccc----cccce
Q 009906 364 SWWIHRIRRARDLYDE-FRIDHF----RGFAG 390 (522)
Q Consensus 364 ~ww~~rlr~~~~~~g~-lRIDH~----lGlfR 390 (522)
+-|.++.-..|+..|. .||||= .|+-+
T Consensus 178 ~~wa~~~N~~l~~~g~~~rid~rS~~~qgi~~ 209 (744)
T TIGR02768 178 EQWAELANEHLAEAGLDLRIDHRSYAEQGIDL 209 (744)
T ss_pred HHHHHHHHHHHHHcCCCceEccccHHHcCCcc
Confidence 4577888888988886 899996 56543
No 77
>PRK13840 sucrose phosphorylase; Provisional
Probab=25.34 E-value=1.4e+02 Score=33.60 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=47.0
Q ss_pred CCCCCccchHHHHHHHH-HHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhhhh
Q 009906 101 GPYGIGDFGAEAFRFID-WLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVKD 167 (522)
Q Consensus 101 ~~~GIGDfgdla~~l~d-~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~e~ 167 (522)
-+.|.|||..+. +.+| .++.. .+.|-|+|+..+. |..+-=|.++.=+..||-|=+.+++.+.
T Consensus 12 Ds~~~GdL~gl~-~kLd~yL~~l-v~~vhllPff~ps---p~sD~GYdv~DY~~VDP~fGt~eDf~~L 74 (495)
T PRK13840 12 DRLGDGGLKSLT-ALLDGRLDGL-FGGVHILPFFYPI---DGADAGFDPIDHTKVDPRLGDWDDVKAL 74 (495)
T ss_pred cCCCCCCHhHHH-HHHHHHHHHH-hCeEEECCCccCC---CCCCCCCCCcChhhcCcccCCHHHHHHH
Confidence 345569999985 8889 59988 8999999998432 2234468888888899999888887643
No 78
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=24.35 E-value=64 Score=36.82 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=36.3
Q ss_pred CccchHHHH----------HHHHHHHHhCCCeeeEccCCCCCCCC---C--CCCCCCCccccccccccc
Q 009906 105 IGDFGAEAF----------RFIDWLHQAGCSVWQVLPLVPPGRKA---N--EEGSPYSGQDANCGNTLL 158 (522)
Q Consensus 105 IGDfgdla~----------~l~d~~~~~G~~~~qilPL~~~~~~~---~--~~~SPYsp~Sr~alNPlY 158 (522)
.|+|..++. .-++.++++|.+.|+|+||++..... + ....-|.|..=|+.++-|
T Consensus 149 ~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y 217 (605)
T TIGR02104 149 KGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSY 217 (605)
T ss_pred CCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhh
Confidence 477766542 24899999999999999998753110 0 012467777767766665
No 79
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.94 E-value=1.9e+02 Score=30.01 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEeeccccccCCchhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHh
Q 009906 282 FQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKD 361 (522)
Q Consensus 282 ~~~Ql~~~~~~A~~~Gi~L~gDLpvgV~~dsaDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~ 361 (522)
-.+|++++.+||+++||.|+--+-. ++=++.|..-.-|..- ...+.||+.++ +. ...
T Consensus 58 T~~ei~ei~~yA~~~gI~vIPeid~---pGH~~~~l~~~~~~~l------~~~~~~~~~l~------------~~--~~~ 114 (301)
T cd06565 58 TKEEIREIDDYAAELGIEVIPLIQT---LGHLEFILKHPEFRHL------REVDDPPQTLC------------PG--EPK 114 (301)
T ss_pred CHHHHHHHHHHHHHcCCEEEecCCC---HHHHHHHHhCcccccc------cccCCCCCccC------------CC--Chh
Confidence 5789999999999999999988875 3334445432222211 11233333333 22 245
Q ss_pred chHHHHHHHHHHhhhcCeeee
Q 009906 362 GFSWWIHRIRRARDLYDEFRI 382 (522)
Q Consensus 362 gY~ww~~rlr~~~~~~g~lRI 382 (522)
-|+.-+++++..+..|..=.|
T Consensus 115 t~~fi~~li~ev~~~f~s~~~ 135 (301)
T cd06565 115 TYDFIEEMIRQVLELHPSKYI 135 (301)
T ss_pred HHHHHHHHHHHHHHhCCCCeE
Confidence 688999999999999874333
No 80
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=23.89 E-value=2.1e+02 Score=29.86 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=43.3
Q ss_pred HHHHHHcCCeEEeeccccccCCc--hhhhccccccccccCCCCcee----ecCCCCCCCccccCCCCCCCChHHHHHhch
Q 009906 290 RNYAQMKGISIMGDMPIYVGYHS--ADVWANKKHFLLNRRGFPLEV----SGVPPDAFSETGQLWGSPLYDWKAMEKDGF 363 (522)
Q Consensus 290 ~~~A~~~Gi~L~gDLpvgV~~ds--aDvWa~~~~F~~~~~g~p~~~----~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY 363 (522)
.+..+++|+.++.-+=-+|+.++ .+.-.....|..+.+|.+... .++=||.+ || +..
T Consensus 72 i~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dft------------np-----~a~ 134 (319)
T cd06591 72 VRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDAT------------NP-----EAR 134 (319)
T ss_pred HHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCC------------CH-----HHH
Confidence 44456799987776644566654 233334455555544332110 01223333 23 356
Q ss_pred HHHHHHHHHHhhhcCeeeeccccccceeeeeeCCCC
Q 009906 364 SWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAK 399 (522)
Q Consensus 364 ~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP~g~~ 399 (522)
+||.++++..+.- +|. .-||+..+++
T Consensus 135 ~w~~~~~~~~~~~---------~Gv-dg~w~D~~Ep 160 (319)
T cd06591 135 EYYWKQLKKNYYD---------KGV-DAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHhhc---------CCC-cEEEecCCCC
Confidence 8999998876642 333 3455666553
No 81
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=23.03 E-value=34 Score=38.17 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhcCeeeeccccc
Q 009906 364 SWWIHRIRRARDLYDEFRIDHFRG 387 (522)
Q Consensus 364 ~ww~~rlr~~~~~~g~lRIDH~lG 387 (522)
.-.-+.|...+.--.++||||++|
T Consensus 155 ~~Ln~~l~~~f~E~qIyRIDHYLG 178 (482)
T PRK12853 155 RALNATLAKVFDEDQIYRIDHFLG 178 (482)
T ss_pred HHHHHHHHhhCCHHHeeccCcccc
Confidence 345567778888888999999998
No 82
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=22.38 E-value=26 Score=39.21 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.1
Q ss_pred CCcEEecCcCchhhHHHHH
Q 009906 473 RNQVVYTGTHDNDTVKILY 491 (522)
Q Consensus 473 ~~~va~~~THD~ptl~Gww 491 (522)
..+++..||||++|+.|=+
T Consensus 155 nRtLvAiGTHDLDt~qgPf 173 (578)
T KOG2472|consen 155 NRTLVAIGTHDLDTIQGPF 173 (578)
T ss_pred hccccccccccchhccCCe
Confidence 4589999999999998855
No 83
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=22.21 E-value=81 Score=34.07 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCCch-----hhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHH
Q 009906 286 WQKVRNYAQMKGISIMGDMPIYVGYHSA-----DVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEK 360 (522)
Q Consensus 286 l~~~~~~A~~~Gi~L~gDLpvgV~~dsa-----DvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~ 360 (522)
.+++.+..+++|+.++.-+--+|..++. +.....+.|..+.+|.+ -.|+.|+.-..-++--..
T Consensus 85 ~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~------------~~~~~w~g~~~~~Dftnp 152 (441)
T PF01055_consen 85 PKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSP------------YIGRVWPGKGGFIDFTNP 152 (441)
T ss_dssp HHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-------------EEEETTEEEEEB-TTSH
T ss_pred hHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCc------------ccccccCCcccccCCCCh
Confidence 4555677889999888877777777754 33344455655544422 235556522212222223
Q ss_pred hchHHHHHHHHHHhhh
Q 009906 361 DGFSWWIHRIRRARDL 376 (522)
Q Consensus 361 ~gY~ww~~rlr~~~~~ 376 (522)
+..+||.++++..+..
T Consensus 153 ~a~~w~~~~~~~~~~~ 168 (441)
T PF01055_consen 153 EARDWWKEQLKELLDD 168 (441)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4679999999998887
No 84
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=22.20 E-value=90 Score=34.61 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCe-EEeeccccccCCchhhhcc------cccccccc---CCCCceeecCCCCC-CCccccCCCCCCCC
Q 009906 286 WQKVRNYAQMKGIS-IMGDMPIYVGYHSADVWAN------KKHFLLNR---RGFPLEVSGVPPDA-FSETGQLWGSPLYD 354 (522)
Q Consensus 286 l~~~~~~A~~~Gi~-L~gDLpvgV~~dsaDvWa~------~~~F~~~~---~g~p~~~~GAPPD~-Fs~~GQ~WG~P~y~ 354 (522)
|+++++.|+++||- |.-++..|+++-| .-|+. |++..+.+ .|.|...+-.-|+. -.+.|..=|.--=|
T Consensus 245 l~~l~~~~~~~gillI~DEVQtG~GRTG-~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~~~~g~~~~Tf~GN 323 (447)
T COG0160 245 LKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMDWPPGGHGGTFGGN 323 (447)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccc-cchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcccCCcccCCCCCcC
Confidence 67899999999985 6677999999998 66664 45554442 12221111111111 00111111111112
Q ss_pred hHH----------HHHhch--------HHHHHHHHHHhhhcCeeeeccccccceeeeee
Q 009906 355 WKA----------MEKDGF--------SWWIHRIRRARDLYDEFRIDHFRGFAGFWAVP 395 (522)
Q Consensus 355 w~~----------l~~~gY--------~ww~~rlr~~~~~~g~lRIDH~lGlfRlW~IP 395 (522)
|-. +++++. +-.+++|+.+.+.+. .|=.|||.=.+|-|-
T Consensus 324 pva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~--~IgdVRG~Glm~giE 380 (447)
T COG0160 324 PVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHP--LIGDVRGLGLMIGVE 380 (447)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcC--ceecccccceEEEEE
Confidence 222 222211 567888888888888 788899987777764
No 85
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=22.05 E-value=1.2e+02 Score=37.50 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=26.2
Q ss_pred CCccchHHHHHHHHHHHHhCCCeeeEccCCC
Q 009906 104 GIGDFGAEAFRFIDWLHQAGCSVWQVLPLVP 134 (522)
Q Consensus 104 GIGDfgdla~~l~d~~~~~G~~~~qilPL~~ 134 (522)
+.|+|..++ +=++.++++|.+.|||+|+++
T Consensus 475 ~~Gtf~gl~-ekLdYLkeLGVT~I~LmPv~d 504 (1111)
T TIGR02102 475 QFGTFAAFV-EKLDYLQDLGVTHIQLLPVLS 504 (1111)
T ss_pred CCcCHHHHH-HhHHHHHHcCCCEEEEcCccc
Confidence 369999987 456999999999999999975
No 86
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=21.84 E-value=37 Score=38.00 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhcCeeeeccccc
Q 009906 364 SWWIHRIRRARDLYDEFRIDHFRG 387 (522)
Q Consensus 364 ~ww~~rlr~~~~~~g~lRIDH~lG 387 (522)
+-.-+.|+..+.---++||||++|
T Consensus 165 ~~Ln~~l~~~f~E~qIyRIDHyLG 188 (495)
T PRK05722 165 RELNDQVGEVFKEEQIYRIDHYLG 188 (495)
T ss_pred HHHHHHHHhcCCHhHeeccCcccc
Confidence 335567777777778999999999
No 87
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=21.77 E-value=1.5e+02 Score=33.02 Aligned_cols=54 Identities=7% Similarity=0.209 Sum_probs=39.0
Q ss_pred ccchHHHHHHHH-HHHHhCCCeeeEccCCCCCCCCCCCCCCCCccccccccccccChhhhhh
Q 009906 106 GDFGAEAFRFID-WLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVK 166 (522)
Q Consensus 106 GDfgdla~~l~d-~~~~~G~~~~qilPL~~~~~~~~~~~SPYsp~Sr~alNPlYI~le~l~e 166 (522)
+.++|+. .+++ +++. |.+.|-|+|+.+. + .+-=|+.+.=+..||-|=+.+++.+
T Consensus 14 ~glgdl~-g~l~~yL~~-~v~~i~LlPffps----~-sD~GYdv~DY~~VDP~~Gt~~Df~~ 68 (470)
T TIGR03852 14 KNLKELN-KVLENYFKD-AVGGVHLLPFFPS----T-GDRGFAPMDYTEVDPAFGDWSDVEA 68 (470)
T ss_pred CChhhHH-HHHHHHHHH-hCCEEEECCCCcC----C-CCCCcCchhhceeCcccCCHHHHHH
Confidence 4455542 4555 7777 8999999999875 2 2566888888889998887777653
No 88
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=21.45 E-value=39 Score=37.77 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhcCeeeeccccc
Q 009906 364 SWWIHRIRRARDLYDEFRIDHFRG 387 (522)
Q Consensus 364 ~ww~~rlr~~~~~~g~lRIDH~lG 387 (522)
+-..+.|...+.--.++||||++|
T Consensus 156 ~~Ln~~l~~~f~E~qIyRIDHyLG 179 (482)
T TIGR00871 156 QELNKQLRAVFKEDQIYRIDHYLG 179 (482)
T ss_pred HHHHHHHHhcCCHhHeeecccccc
Confidence 345566666666667999999999
No 89
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.52 E-value=2.2e+02 Score=29.72 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=39.7
Q ss_pred HHHHHHcCCeEEeeccccccCCc--hhhhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHH
Q 009906 290 RNYAQMKGISIMGDMPIYVGYHS--ADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWI 367 (522)
Q Consensus 290 ~~~A~~~Gi~L~gDLpvgV~~ds--aDvWa~~~~F~~~~~g~p~~~~GAPPD~Fs~~GQ~WG~P~y~w~~l~~~gY~ww~ 367 (522)
.+..+++|+.++.-+--+|..++ .+--.....|..+.+ |-+| ..|+-|+-..--++-...+..+||.
T Consensus 79 i~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~-------g~~~----~~~~~w~g~~~~~Dftnp~a~~ww~ 147 (317)
T cd06599 79 VAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPD-------GREP----SIGQFWGGVGSFVDFTNPEGREWWK 147 (317)
T ss_pred HHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCC-------CCCc----ceecccCCCeEeecCCChHHHHHHH
Confidence 44456689888877777776654 111222344443322 2222 2355554433223333334568999
Q ss_pred HHHHHHhh
Q 009906 368 HRIRRARD 375 (522)
Q Consensus 368 ~rlr~~~~ 375 (522)
++++..+.
T Consensus 148 ~~~~~~~~ 155 (317)
T cd06599 148 EGVKEALL 155 (317)
T ss_pred HHHHHHHh
Confidence 99977765
Done!