Query 009909
Match_columns 522
No_of_seqs 373 out of 1567
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e6m_A Werner syndrome ATP-dep 99.9 3.5E-26 1.2E-30 220.0 18.2 184 6-222 12-201 (208)
2 3saf_A Exosome component 10; e 99.9 6.3E-26 2.2E-30 240.2 21.7 175 9-221 108-282 (428)
3 1vk0_A Hypothetical protein; h 99.9 3.1E-26 1.1E-30 220.4 14.8 166 20-214 28-205 (206)
4 2hbj_A Exosome complex exonucl 99.9 1.3E-23 4.3E-28 222.3 21.1 174 11-222 87-260 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.9 1.8E-23 6.1E-28 218.9 20.1 175 10-222 2-176 (375)
6 3cym_A Uncharacterized protein 99.8 2.4E-20 8.2E-25 198.8 17.6 184 10-231 17-205 (440)
7 2kfn_A Klenow fragment of DNA 99.7 5.2E-16 1.8E-20 171.7 19.2 180 8-221 4-199 (605)
8 3pv8_A DNA polymerase I; DNA p 99.6 4.1E-15 1.4E-19 163.5 13.8 156 32-222 29-187 (592)
9 1x9m_A DNA polymerase; DNA plo 99.3 1.2E-12 4.2E-17 146.9 7.4 154 34-221 1-188 (698)
10 4dfk_A DNA polymerase I, therm 98.8 5.4E-09 1.8E-13 113.8 8.1 123 33-221 11-134 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.2 1.7E-05 5.7E-10 76.9 13.4 166 19-222 24-227 (235)
12 1bgx_T TAQ DNA polymerase; DNA 97.9 2.3E-05 7.9E-10 89.3 8.8 120 33-220 305-425 (832)
13 2p1j_A POLIII, DNA polymerase 97.3 0.0028 9.5E-08 58.9 12.5 100 91-220 81-180 (186)
14 1wlj_A Interferon stimulated g 97.2 0.0039 1.3E-07 58.1 13.3 100 91-221 72-174 (189)
15 2f96_A Ribonuclease T; RNAse, 96.3 0.053 1.8E-06 51.6 13.3 93 104-222 126-219 (224)
16 1y97_A Three prime repair exon 95.2 0.076 2.6E-06 50.8 9.6 110 91-218 98-212 (238)
17 3mxm_B Three prime repair exon 94.8 0.087 3E-06 51.0 9.0 110 91-218 103-217 (242)
18 2qxf_A Exodeoxyribonuclease I; 94.8 0.29 9.9E-06 52.3 13.7 106 91-215 83-200 (482)
19 3u3y_B Three prime repair exon 93.9 0.22 7.6E-06 50.2 9.9 111 91-218 103-217 (314)
20 2gui_A DNA polymerase III epsi 93.7 0.28 9.5E-06 45.3 9.5 100 91-215 84-184 (194)
21 1w0h_A 3'-5' exonuclease ERI1; 91.0 0.69 2.4E-05 42.8 8.5 100 92-215 88-194 (204)
22 2lcq_A Putative toxin VAPC6; P 90.1 0.27 9.4E-06 44.5 4.6 28 388-415 85-112 (165)
23 3j20_Y 30S ribosomal protein S 88.6 0.31 1E-05 35.5 3.0 15 489-503 35-49 (50)
24 2igi_A Oligoribonuclease; RNAs 87.7 7.9 0.00027 34.7 12.9 33 91-123 83-119 (180)
25 1zbh_A 3'-5' exonuclease ERI1; 83.8 4.3 0.00015 40.2 9.6 101 91-215 155-262 (299)
26 3na7_A HP0958; flagellar bioge 83.2 0.5 1.7E-05 46.0 2.4 41 451-508 199-239 (256)
27 1qht_A Protein (DNA polymerase 83.1 19 0.00064 40.5 15.6 162 32-214 135-328 (775)
28 1zbu_A ERI-1 homolog, 3'-5' ex 82.8 5 0.00017 40.8 9.8 101 91-215 205-312 (349)
29 2pk7_A Uncharacterized protein 81.3 0.97 3.3E-05 35.1 2.9 28 451-501 9-36 (69)
30 2jr6_A UPF0434 protein NMA0874 81.0 0.95 3.3E-05 35.0 2.8 29 450-501 8-36 (68)
31 2hf1_A Tetraacyldisaccharide-1 80.9 0.93 3.2E-05 35.1 2.7 28 451-501 9-36 (68)
32 1s5j_A DNA polymerase I; repli 80.7 30 0.001 39.3 16.2 159 31-210 189-387 (847)
33 1noy_A Protein (DNA polymerase 80.3 13 0.00043 38.2 11.9 67 138-212 267-335 (388)
34 2js4_A UPF0434 protein BB2007; 79.7 0.98 3.3E-05 35.2 2.5 29 450-501 8-36 (70)
35 4rxn_A Rubredoxin; electron tr 75.1 1.2 4.1E-05 32.9 1.7 39 452-499 5-44 (54)
36 2jny_A Uncharacterized BCR; st 71.2 2.6 8.8E-05 32.5 2.8 29 450-501 10-38 (67)
37 3ga8_A HTH-type transcriptiona 71.0 1.7 5.8E-05 34.2 1.8 29 489-517 34-62 (78)
38 2k4x_A 30S ribosomal protein S 70.7 2.7 9.3E-05 31.0 2.7 17 489-505 34-50 (55)
39 1pft_A TFIIB, PFTFIIBN; N-term 69.7 2.8 9.7E-05 29.9 2.6 13 490-502 23-35 (50)
40 3iay_A DNA polymerase delta ca 68.0 33 0.0011 39.4 12.3 114 91-213 315-466 (919)
41 1e8j_A Rubredoxin; iron-sulfur 66.2 3.1 0.0001 30.4 2.2 40 451-499 4-44 (52)
42 3o9x_A Uncharacterized HTH-typ 64.6 0.8 2.7E-05 39.4 -1.5 28 490-517 35-62 (133)
43 1vq8_Z 50S ribosomal protein L 64.1 2.7 9.1E-05 33.8 1.6 16 489-504 43-58 (83)
44 2kn9_A Rubredoxin; metalloprot 63.9 2.1 7.2E-05 34.2 1.0 41 450-499 27-68 (81)
45 3cg7_A CRN-4, cell death-relat 63.1 6.9 0.00024 38.9 4.9 102 92-214 98-207 (308)
46 1yk4_A Rubredoxin, RD; electro 62.7 3.1 0.00011 30.4 1.6 39 452-499 4-43 (52)
47 3k59_A POL II, DNA polymerase 62.3 38 0.0013 38.1 11.2 152 32-212 153-349 (786)
48 1dx8_A Rubredoxin; electron tr 61.4 3.1 0.00011 32.3 1.5 40 451-499 8-48 (70)
49 1dxg_A Desulforedoxin; non-hem 60.9 4 0.00014 27.3 1.8 14 488-501 3-16 (36)
50 4gmj_B CCR4-NOT transcription 60.9 1.3E+02 0.0044 29.5 14.3 95 99-219 145-248 (285)
51 2v0c_A Aminoacyl-tRNA syntheta 60.7 8.3 0.00028 44.1 5.5 33 368-400 62-94 (878)
52 1x0t_A Ribonuclease P protein 60.3 13 0.00043 31.9 5.3 33 430-462 45-77 (120)
53 2gbz_A Oligoribonuclease; ORN, 60.2 20 0.00068 32.7 7.2 32 92-123 88-123 (194)
54 2v3b_B Rubredoxin 2, rubredoxi 60.0 2.9 9.8E-05 30.9 1.0 40 451-499 4-44 (55)
55 1s24_A Rubredoxin 2; electron 59.1 2.9 0.0001 33.9 1.0 41 450-499 35-76 (87)
56 2k3r_A Ribonuclease P protein 58.8 14 0.00049 31.7 5.5 60 430-501 40-99 (123)
57 2xri_A ERI1 exoribonuclease 3; 56.9 16 0.00054 34.2 6.0 97 91-213 106-211 (224)
58 3tqo_A Cysteinyl-tRNA syntheta 55.4 5.3 0.00018 42.2 2.6 34 368-401 53-86 (462)
59 4arc_A Leucine--tRNA ligase; l 54.5 5.6 0.00019 45.5 2.7 33 368-400 82-114 (880)
60 3cc2_Z 50S ribosomal protein L 52.3 5.7 0.0002 33.8 1.7 15 490-504 77-91 (116)
61 1dl6_A Transcription factor II 51.8 9.7 0.00033 28.2 2.8 13 489-501 28-40 (58)
62 3i8o_A KH domain-containing pr 50.1 14 0.00049 32.5 4.1 39 388-426 94-132 (142)
63 1rik_A E6APC1 peptide; E6-bind 49.4 6.9 0.00024 22.7 1.4 18 492-509 3-20 (29)
64 2kvh_A Zinc finger and BTB dom 49.3 5.8 0.0002 22.9 1.0 19 491-509 3-21 (27)
65 2lvu_A Zinc finger and BTB dom 54.8 3.6 0.00012 23.6 0.0 18 492-509 3-20 (26)
66 3u50_C Telomerase-associated p 48.5 7 0.00024 35.7 1.9 28 449-500 41-68 (172)
67 1o4w_A PIN (PILT N-terminus) d 47.4 12 0.0004 32.7 3.1 41 386-427 98-138 (147)
68 1li5_A Cysrs, cysteinyl-tRNA s 47.4 7.8 0.00027 40.9 2.3 34 368-401 50-83 (461)
69 3v2d_5 50S ribosomal protein L 46.6 8.2 0.00028 29.0 1.6 11 449-459 29-39 (60)
70 1gh9_A 8.3 kDa protein (gene M 46.3 9.4 0.00032 29.7 2.0 13 488-501 18-30 (71)
71 1d0q_A DNA primase; zinc-bindi 46.2 10 0.00035 31.3 2.4 47 433-499 19-66 (103)
72 2kvg_A Zinc finger and BTB dom 45.8 6.7 0.00023 22.8 0.9 18 492-509 4-21 (27)
73 2m0f_A Zinc finger and BTB dom 45.7 8.6 0.00029 22.1 1.4 18 492-509 3-20 (29)
74 2m0e_A Zinc finger and BTB dom 45.2 6.5 0.00022 22.7 0.8 18 492-509 3-20 (29)
75 2kvf_A Zinc finger and BTB dom 45.2 7.3 0.00025 22.5 1.0 18 492-509 4-21 (28)
76 6rxn_A Rubredoxin; electron tr 44.2 8.1 0.00028 27.4 1.2 14 490-503 3-16 (46)
77 3ix7_A Uncharacterized protein 43.8 16 0.00055 31.9 3.4 37 388-424 86-122 (134)
78 1ard_A Yeast transcription fac 43.5 5.2 0.00018 23.2 0.1 18 492-509 3-20 (29)
79 2els_A Zinc finger protein 406 43.4 7.8 0.00027 24.1 1.0 20 490-509 8-27 (36)
80 3c8z_A Cysteinyl-tRNA syntheta 43.2 7.4 0.00025 40.3 1.3 33 368-400 67-99 (414)
81 2zjr_Z 50S ribosomal protein L 43.0 9 0.00031 28.7 1.4 12 448-459 28-39 (60)
82 2m0d_A Zinc finger and BTB dom 41.7 8.8 0.0003 22.2 1.0 19 491-509 3-21 (30)
83 1znf_A 31ST zinc finger from X 41.4 5.9 0.0002 22.6 0.1 18 492-509 2-19 (27)
84 2akl_A PHNA-like protein PA012 41.1 12 0.0004 32.5 2.0 28 450-501 27-54 (138)
85 2kpi_A Uncharacterized protein 41.0 13 0.00044 27.4 1.9 12 450-461 10-21 (56)
86 1klr_A Zinc finger Y-chromosom 40.9 6.8 0.00023 22.8 0.4 18 492-509 3-20 (30)
87 1ffk_W Ribosomal protein L37AE 40.1 13 0.00043 29.1 1.8 15 490-504 44-58 (73)
88 2elx_A Zinc finger protein 406 39.5 9.8 0.00033 23.3 1.0 20 490-509 6-25 (35)
89 3pwf_A Rubrerythrin; non heme 39.0 12 0.0004 34.0 1.8 14 489-502 136-149 (170)
90 3j21_i 50S ribosomal protein L 38.7 14 0.00049 29.5 2.0 17 489-505 51-67 (83)
91 3iz5_m 60S ribosomal protein L 38.2 16 0.00055 29.8 2.2 18 489-506 52-69 (92)
92 3m7n_A Putative uncharacterize 37.7 5.6 0.00019 36.4 -0.6 14 448-461 138-151 (179)
93 3jyw_9 60S ribosomal protein L 37.2 15 0.00052 28.6 1.9 17 489-505 42-58 (72)
94 1l1o_C Replication protein A 7 36.9 16 0.00056 33.3 2.4 13 489-501 60-72 (181)
95 3izc_m 60S ribosomal protein R 36.8 17 0.00059 29.6 2.2 18 489-506 52-69 (92)
96 2elt_A Zinc finger protein 406 36.7 12 0.0004 23.1 1.0 20 490-509 8-27 (36)
97 4a17_Y RPL37A, 60S ribosomal p 36.1 15 0.00051 30.6 1.8 18 489-506 52-69 (103)
98 2k5c_A Uncharacterized protein 35.7 9.4 0.00032 30.4 0.5 13 491-503 51-63 (95)
99 3sp1_A Cysteinyl-tRNA syntheta 35.6 8.7 0.0003 41.0 0.4 34 368-401 70-113 (501)
100 3dbo_B Uncharacterized protein 35.4 20 0.00068 31.5 2.7 45 365-415 97-141 (150)
101 2lvt_A Zinc finger and BTB dom 41.0 8.2 0.00028 22.5 0.0 18 492-509 3-20 (29)
102 1yuz_A Nigerythrin; rubrythrin 34.6 23 0.0008 32.9 3.1 28 430-459 153-180 (202)
103 1srk_A Zinc finger protein ZFP 34.4 13 0.00045 22.7 1.0 20 490-509 6-25 (35)
104 2adr_A ADR1; transcription reg 34.3 39 0.0013 23.4 3.7 45 452-509 4-48 (60)
105 2odx_A Cytochrome C oxidase po 34.3 15 0.0005 29.2 1.4 13 489-501 54-66 (80)
106 1p7a_A BF3, BKLF, kruppel-like 34.2 11 0.00037 23.5 0.5 20 490-509 10-29 (37)
107 2lvr_A Zinc finger and BTB dom 40.4 8.5 0.00029 22.4 0.0 18 492-509 4-21 (30)
108 3ray_A PR domain-containing pr 33.7 14 0.00047 35.5 1.4 26 478-504 18-43 (237)
109 2lo3_A SAGA-associated factor 32.7 20 0.00068 24.8 1.6 14 487-500 13-26 (44)
110 3j21_g 50S ribosomal protein L 32.6 15 0.0005 26.7 1.0 11 490-500 27-37 (51)
111 2k5r_A Uncharacterized protein 32.6 43 0.0015 27.5 4.0 13 489-501 51-63 (97)
112 1v54_F VI, cytochrome C oxidas 32.1 16 0.00056 30.1 1.4 13 489-501 77-89 (98)
113 1s24_A Rubredoxin 2; electron 32.1 16 0.00055 29.5 1.3 15 489-503 33-47 (87)
114 3qt1_I DNA-directed RNA polyme 32.0 22 0.00074 31.0 2.3 35 450-503 24-58 (133)
115 2elo_A Zinc finger protein 406 32.0 13 0.00046 23.0 0.7 21 489-509 7-27 (37)
116 2elp_A Zinc finger protein 406 31.8 22 0.00076 22.0 1.8 21 489-509 7-28 (37)
117 2elv_A Zinc finger protein 406 31.6 16 0.00053 22.6 1.0 20 490-509 8-27 (36)
118 2kn9_A Rubredoxin; metalloprot 31.5 16 0.00055 29.1 1.2 14 489-502 25-38 (81)
119 2lce_A B-cell lymphoma 6 prote 31.2 36 0.0012 24.9 3.2 46 451-509 18-63 (74)
120 3zvk_A VAPC2, toxin of toxin-a 30.5 25 0.00086 29.4 2.4 40 366-411 82-122 (134)
121 2d74_B Translation initiation 30.3 43 0.0015 29.7 3.9 53 422-500 82-134 (148)
122 2au3_A DNA primase; zinc ribbo 30.3 25 0.00087 36.1 2.9 47 433-499 16-63 (407)
123 3tnd_A TRNA(FMet)-specific end 30.0 38 0.0013 28.2 3.5 40 367-412 82-122 (132)
124 3u1f_A Methionyl-tRNA syntheta 29.9 18 0.0006 38.6 1.6 32 368-401 38-71 (542)
125 2elm_A Zinc finger protein 406 29.6 26 0.00088 21.9 1.8 21 489-509 7-27 (37)
126 2yts_A Zinc finger protein 484 29.0 18 0.00062 23.8 1.0 21 489-509 10-30 (46)
127 1njq_A Superman protein; zinc- 28.8 18 0.00063 22.8 1.0 20 490-509 5-24 (39)
128 3q87_A Putative uncharacterize 28.6 17 0.0006 31.3 1.0 11 491-501 99-109 (125)
129 2elq_A Zinc finger protein 406 28.6 22 0.00074 21.9 1.3 21 489-509 7-27 (36)
130 3iuf_A Zinc finger protein UBI 28.5 18 0.00063 24.5 1.0 20 490-509 6-25 (48)
131 1paa_A Yeast transcription fac 28.5 15 0.0005 21.4 0.4 17 492-508 3-19 (30)
132 1lko_A Rubrerythrin all-iron(I 27.8 20 0.00069 32.9 1.4 14 490-504 154-167 (191)
133 2emi_A Zinc finger protein 484 27.6 20 0.00067 23.6 1.0 20 490-509 11-30 (46)
134 1wg2_A Zinc finger (AN1-like) 27.6 37 0.0013 25.7 2.6 11 450-460 15-25 (64)
135 1twf_I B12.6, DNA-directed RNA 27.3 28 0.00097 29.6 2.2 36 450-504 4-39 (122)
136 3h0g_I DNA-directed RNA polyme 27.3 35 0.0012 28.6 2.7 37 450-505 4-40 (113)
137 2kfq_A FP1; protein, de novo p 27.1 10 0.00035 23.1 -0.6 16 492-507 3-18 (32)
138 2yrj_A Zinc finger protein 473 27.1 20 0.0007 23.5 1.0 21 489-509 10-30 (46)
139 1rim_A E6APC2 peptide; E6-bind 26.9 13 0.00045 22.8 -0.1 18 492-509 3-20 (33)
140 2e72_A POGO transposable eleme 26.8 16 0.00054 26.1 0.3 12 490-501 11-22 (49)
141 3kfl_A Methionyl-tRNA syntheta 26.5 20 0.00068 38.6 1.3 34 368-401 55-88 (564)
142 2eoy_A Zinc finger protein 473 26.1 26 0.00088 23.1 1.4 20 490-509 11-30 (46)
143 2epv_A Zinc finger protein 268 26.1 22 0.00075 23.2 1.0 21 489-509 10-30 (44)
144 2epc_A Zinc finger protein 32; 26.0 22 0.00076 22.7 1.0 20 490-509 10-29 (42)
145 4dlp_A Aminoacyl-tRNA syntheta 25.7 22 0.00074 38.0 1.4 34 368-401 54-87 (536)
146 1yuz_A Nigerythrin; rubrythrin 25.6 26 0.00087 32.6 1.7 14 489-502 169-182 (202)
147 2en2_A B-cell lymphoma 6 prote 25.5 27 0.00093 22.3 1.4 21 489-509 9-29 (42)
148 2elr_A Zinc finger protein 406 25.5 19 0.00064 22.1 0.5 21 489-509 7-27 (36)
149 1qyp_A RNA polymerase II; tran 25.5 27 0.00091 25.5 1.4 12 489-500 41-52 (57)
150 2em3_A Zinc finger protein 28 25.5 23 0.00078 23.3 1.0 21 489-509 10-30 (46)
151 2cot_A Zinc finger protein 435 25.4 79 0.0027 23.1 4.3 46 451-509 19-64 (77)
152 2kwq_A Protein MCM10 homolog; 25.2 36 0.0012 27.7 2.3 40 451-499 16-55 (92)
153 2i5o_A DNA polymerase ETA; zin 25.1 34 0.0012 23.3 1.8 13 489-501 7-19 (39)
154 2y69_F Cytochrome C oxidase su 25.0 27 0.00092 30.3 1.6 13 489-501 108-120 (129)
155 2em4_A Zinc finger protein 28 24.8 24 0.00081 23.2 1.0 21 489-509 10-30 (46)
156 2e9h_A EIF-5, eukaryotic trans 24.7 66 0.0023 28.7 4.1 60 422-505 81-140 (157)
157 1wfh_A Zinc finger (AN1-like) 24.7 45 0.0015 25.3 2.5 11 450-460 15-25 (64)
158 2emj_A Zinc finger protein 28 24.6 24 0.00083 23.2 1.0 20 490-509 11-30 (46)
159 2eox_A Zinc finger protein 473 24.5 26 0.0009 22.7 1.2 21 489-509 10-30 (44)
160 2el5_A Zinc finger protein 268 24.5 25 0.00084 22.5 1.0 21 489-509 8-28 (42)
161 2ytf_A Zinc finger protein 268 24.3 25 0.00084 23.0 1.0 21 489-509 10-30 (46)
162 3d45_A Poly(A)-specific ribonu 24.2 75 0.0026 33.7 5.2 106 102-217 274-393 (507)
163 2x1l_A Methionyl-tRNA syntheta 23.9 25 0.00084 37.3 1.4 33 368-400 41-73 (524)
164 2epu_A Zinc finger protein 32; 23.8 24 0.00084 23.0 0.9 21 489-509 10-30 (45)
165 2eoz_A Zinc finger protein 473 23.8 24 0.00083 23.2 0.9 21 489-509 10-30 (46)
166 2yu5_A Zinc finger protein 473 23.5 31 0.0011 22.3 1.4 20 490-509 11-30 (44)
167 1vk6_A NADH pyrophosphatase; 1 23.3 39 0.0013 32.7 2.6 32 450-504 107-138 (269)
168 2lcq_A Putative toxin VAPC6; P 23.3 26 0.00089 31.1 1.2 21 422-445 99-119 (165)
169 2eof_A Zinc finger protein 268 23.3 27 0.00091 22.6 1.0 21 489-509 10-30 (44)
170 2emb_A Zinc finger protein 473 23.2 27 0.00091 22.7 1.0 20 490-509 11-30 (44)
171 2emh_A Zinc finger protein 484 23.2 26 0.0009 22.9 1.0 21 489-509 10-30 (46)
172 2ytp_A Zinc finger protein 484 23.2 27 0.00091 23.0 1.0 21 489-509 10-30 (46)
173 1fv5_A First zinc finger of U- 23.1 30 0.001 22.7 1.2 21 489-509 6-26 (36)
174 2a1r_A Poly(A)-specific ribonu 23.1 2E+02 0.0067 29.8 8.1 114 97-218 275-399 (430)
175 2en3_A ZFP-95, zinc finger pro 23.0 32 0.0011 22.5 1.4 21 489-509 10-30 (46)
176 2eoj_A Zinc finger protein 268 22.9 24 0.00081 22.9 0.7 21 489-509 10-30 (44)
177 1wfp_A Zinc finger (AN1-like) 22.9 51 0.0018 25.7 2.6 11 450-460 25-35 (74)
178 1x4u_A Zinc finger, FYVE domai 22.9 69 0.0024 25.1 3.6 15 446-460 10-24 (84)
179 2eor_A Zinc finger protein 224 22.9 27 0.00093 22.8 1.0 21 489-509 10-30 (46)
180 2enh_A Zinc finger protein 28 22.9 22 0.00075 23.4 0.5 20 490-509 11-30 (46)
181 1ncs_A Peptide M30F, transcrip 22.8 43 0.0015 22.3 2.1 21 489-509 16-38 (47)
182 2ep2_A Zinc finger protein 484 22.8 27 0.00094 22.8 1.0 21 489-509 10-30 (46)
183 3u6p_A Formamidopyrimidine-DNA 22.7 31 0.0011 33.6 1.8 12 488-499 262-273 (273)
184 2jrp_A Putative cytoplasmic pr 22.7 51 0.0017 26.2 2.6 11 451-461 3-13 (81)
185 2em8_A Zinc finger protein 224 22.6 28 0.00095 22.9 1.0 21 489-509 10-30 (46)
186 2ept_A Zinc finger protein 32; 22.6 28 0.00096 22.1 1.0 20 490-509 9-28 (41)
187 2yto_A Zinc finger protein 484 22.5 33 0.0011 22.5 1.4 21 489-509 10-30 (46)
188 2epw_A Zinc finger protein 268 22.4 33 0.0011 22.3 1.4 20 490-509 11-30 (46)
189 3mhs_E SAGA-associated factor 22.4 30 0.001 28.3 1.3 16 485-500 69-84 (96)
190 2yxb_A Coenzyme B12-dependent 22.2 66 0.0022 28.4 3.7 31 368-399 38-68 (161)
191 2em7_A Zinc finger protein 224 22.1 29 0.00099 22.7 1.0 21 489-509 10-30 (46)
192 2ep3_A Zinc finger protein 484 22.0 33 0.0011 22.4 1.3 21 489-509 10-30 (46)
193 2eml_A Zinc finger protein 28 21.9 33 0.0011 22.4 1.3 21 489-509 10-30 (46)
194 2d5b_A Methionyl-tRNA syntheta 21.9 25 0.00084 37.0 0.9 33 368-400 32-64 (500)
195 3h87_A Putative uncharacterize 21.9 63 0.0022 28.5 3.5 46 366-415 95-140 (156)
196 2ytg_A ZFP-95, zinc finger pro 21.8 33 0.0011 22.4 1.3 21 489-509 10-30 (46)
197 2cr8_A MDM4 protein; ZF-ranbp 21.8 35 0.0012 24.6 1.3 13 488-500 8-20 (53)
198 2eow_A Zinc finger protein 347 21.7 34 0.0012 22.3 1.3 21 489-509 10-30 (46)
199 2ab3_A ZNF29; zinc finger prot 21.7 30 0.001 19.6 0.9 18 492-509 3-22 (29)
200 1ee8_A MUTM (FPG) protein; bet 21.6 39 0.0013 32.8 2.1 12 488-499 252-263 (266)
201 1x6a_A LIMK-2, LIM domain kina 21.6 56 0.0019 24.9 2.7 42 451-507 16-57 (81)
202 2em2_A Zinc finger protein 28 21.4 30 0.001 22.7 1.0 20 490-509 11-30 (46)
203 2ytb_A Zinc finger protein 32; 21.4 20 0.00068 22.9 0.0 20 490-509 10-29 (42)
204 2el6_A Zinc finger protein 268 21.3 31 0.0011 22.6 1.0 21 489-509 10-30 (46)
205 2eq0_A Zinc finger protein 347 21.2 31 0.001 22.6 1.0 21 489-509 10-30 (46)
206 1yui_A GAGA-factor; complex (D 21.1 36 0.0012 23.4 1.4 21 489-509 22-42 (54)
207 2xzf_A Formamidopyrimidine-DNA 21.0 36 0.0012 33.1 1.8 12 488-499 259-270 (271)
208 2en1_A Zinc finger protein 224 20.9 30 0.001 22.6 0.9 21 489-509 10-30 (46)
209 1qf8_A Casein kinase II; casei 20.9 71 0.0024 29.2 3.6 54 431-505 92-148 (182)
210 1z2q_A LM5-1; membrane protein 20.8 75 0.0026 25.0 3.3 33 446-503 17-49 (84)
211 2yte_A Zinc finger protein 473 20.7 22 0.00075 22.7 0.1 20 490-509 9-28 (42)
212 1vd4_A Transcription initiatio 20.7 48 0.0016 23.6 2.1 19 489-507 12-30 (62)
213 1k82_A Formamidopyrimidine-DNA 20.6 37 0.0013 33.0 1.8 12 488-499 257-268 (268)
214 2ely_A Zinc finger protein 224 20.6 31 0.001 22.7 0.9 20 490-509 11-30 (46)
215 1wig_A KIAA1808 protein; LIM d 20.6 63 0.0022 24.3 2.8 43 450-507 5-47 (73)
216 2enf_A Zinc finger protein 347 20.6 22 0.00076 23.3 0.1 21 489-509 10-30 (46)
217 3irb_A Uncharacterized protein 20.6 35 0.0012 30.0 1.4 17 488-504 44-60 (145)
218 2yw8_A RUN and FYVE domain-con 20.4 75 0.0026 24.8 3.3 32 446-502 15-46 (82)
219 1joc_A EEA1, early endosomal a 20.4 66 0.0023 27.4 3.1 34 444-502 63-96 (125)
220 2dmd_A Zinc finger protein 64, 20.4 95 0.0032 23.6 3.9 15 491-505 36-50 (96)
221 3h99_A Methionyl-tRNA syntheta 20.3 30 0.001 37.1 1.1 33 368-400 47-79 (560)
222 2csx_A Methionyl-tRNA syntheta 20.3 31 0.001 36.3 1.2 33 368-400 34-66 (497)
223 2eos_A B-cell lymphoma 6 prote 20.2 23 0.00078 22.7 0.1 20 490-509 10-29 (42)
224 2eoo_A ZFP-95, zinc finger pro 20.1 34 0.0011 22.4 1.0 21 489-509 10-30 (46)
225 2eq3_A Zinc finger protein 347 20.0 25 0.00085 23.0 0.3 20 490-509 11-30 (46)
No 1
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.94 E-value=3.5e-26 Score=220.01 Aligned_cols=184 Identities=30% Similarity=0.409 Sum_probs=149.0
Q ss_pred CCCccEEEEcCCChHHHH----HHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEE
Q 009909 6 RKPLKIHLVTSTESPEFT----HLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFL 81 (522)
Q Consensus 6 ~~~~~i~~I~t~~~~el~----~ll~~l~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~l 81 (522)
..+.+|++|++ .+++. .+...+...++||||+||.+.+.. +..++++++|+|+. ++.+|+
T Consensus 12 ~f~g~i~~i~~--~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~-~~~~~~~~iqla~~-------------~~~~~~ 75 (208)
T 2e6m_A 12 EFPGSIVYSYE--ASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKP-GKRSRVAVIQLCVS-------------ESKCYL 75 (208)
T ss_dssp CCCSEEEEECS--HHHHHHHHHHHHHHCCTTCEEEEEEECCC---C-CSCCCCCEEEEECS-------------SSEEEE
T ss_pred ccCCcEEEEeC--HHHHHHHHHHHHHHhccCCEEEEEeecCCCCCC-CCCCCeEEEEEecC-------------CCeEEE
Confidence 44577999998 78887 555677788899999999986311 14678999999984 368899
Q ss_pred EeCCCCCchhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCC
Q 009909 82 LDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET 161 (522)
Q Consensus 82 iDl~~l~~~~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~ 161 (522)
||+..+. .+.+.|+++|+|++|.|||||+|+|+..|.+.+|+ .+.++||++++|+|++++. .+
T Consensus 76 i~~~~~~--~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi--------~~~~~fDlt~lAayll~~~-------~~ 138 (208)
T 2e6m_A 76 FHISSMS--VFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDV--------KLESFVELTDVANEKLKCA-------ET 138 (208)
T ss_dssp ECGGGCS--SCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCC--------CCCSEEEHHHHHHHHTTCC-------CC
T ss_pred EECcccc--cchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCC--------CCCCEEEHHHHHHHHccCC-------CC
Confidence 9876543 24568999999999999999999999999887765 2356999999999999863 57
Q ss_pred ccHHHHHHHHcCCcCcc--cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009909 162 KSLANICKELLDISLSK--ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 162 ~sL~~L~~~~Lg~~l~K--~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~l 222 (522)
+||+.|++++||..+.| ..+++||+.|||+++|+.|||.||+++++||+.|.++|++.+.+
T Consensus 139 ~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~ 201 (208)
T 2e6m_A 139 WSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVF 201 (208)
T ss_dssp CCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred hhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 99999999999998844 67899999999999999999999999999999999998887654
No 2
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.94 E-value=6.3e-26 Score=240.22 Aligned_cols=175 Identities=26% Similarity=0.374 Sum_probs=157.3
Q ss_pred ccEEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 009909 9 LKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIP 88 (522)
Q Consensus 9 ~~i~~I~t~~~~el~~ll~~l~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~ 88 (522)
..|++|++ .+++..+++.+...+.||||+||.+..+ +.+.+++||||+. +.+|+||+..+.
T Consensus 108 ~~y~~I~t--~e~L~~~l~~L~~~~~vavDtE~~~~~~---~~~~l~lIQLa~~--------------~~~~lidpl~l~ 168 (428)
T 3saf_A 108 TPCHFISS--LDELVELNEKLLNCQEFAVNLEHHSYRS---FLGLTCLMQISTR--------------TEDFIIDTLELR 168 (428)
T ss_dssp SCEEEECS--HHHHHHHHHHHTTCSEEEEEEEEECTTC---SSCEEEEEEEECS--------------SCEEEEETTTTG
T ss_pred CCcEEECC--HHHHHHHHHHHhcCCeEEEEEEecCCCC---CCCeEEEEEEEeC--------------CcEEEEEeccch
Confidence 56889998 8999999999999999999999988765 6789999999985 478999988763
Q ss_pred chhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHH
Q 009909 89 LPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC 168 (522)
Q Consensus 89 ~~~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~ 168 (522)
.....|+++|+|++|.|||||+++|+.+|.+.+|+ .+.++|| |++|+|+++++ .+||+.|+
T Consensus 169 --~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi--------~~~~~fD-T~lAa~lL~~~--------~~gL~~Lv 229 (428)
T 3saf_A 169 --SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGL--------YVVNMFD-THQAARLLNLG--------RHSLDHLL 229 (428)
T ss_dssp --GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC--------CCSSEEE-HHHHHHHTTCS--------CCSHHHHH
T ss_pred --hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCC--------CcCceee-chhHHHHhCCC--------CCCHHHHH
Confidence 24568999999999999999999999999766765 2468999 99999999863 58999999
Q ss_pred HHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009909 169 KELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (522)
Q Consensus 169 ~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~ 221 (522)
+++||+.++|..+.+||+.|||+++|+.|||.||+++++||+.|.++|++.|.
T Consensus 230 ~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~ 282 (428)
T 3saf_A 230 KLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGN 282 (428)
T ss_dssp HHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998875
No 3
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.94 E-value=3.1e-26 Score=220.42 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=130.8
Q ss_pred HHHHHHHHHh------cCCCeEEEEEeEeCCCCC---CCCC--CceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 009909 20 PEFTHLARAL------SQSSLVGLDAEWKPQRSH---QSNF--PRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIP 88 (522)
Q Consensus 20 ~el~~ll~~l------~~~~~Vg~D~E~~~~~~~---~~~~--~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~ 88 (522)
+++..+++.+ ....+||||+||.+.+.. .+.. ++++|||||+. +.+++|++. ..
T Consensus 28 ~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~--------------~~~~l~~l~-~~ 92 (206)
T 1vk0_A 28 TDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTR--------------NLCLFLRLP-KP 92 (206)
T ss_dssp CCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECS--------------SEEEEEECC-SS
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecC--------------CCeEEEecc-cc
Confidence 4455455444 567899999999976510 0123 48999999985 579999983 11
Q ss_pred chhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHH
Q 009909 89 LPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC 168 (522)
Q Consensus 89 ~~~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~ 168 (522)
.+..+..|..+|+|++|+||||++++|+..|.+.||+ .+.++||++.+|+.+++... ....||+.|+
T Consensus 93 ~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~--------~~~~~~Dl~~la~~~lg~~~-----~~~~gL~~Lv 159 (206)
T 1vk0_A 93 FHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGL--------VIRNAINVGKLAAEARGTLV-----LEFLGTRELA 159 (206)
T ss_dssp CCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCC--------CCSSEEEHHHHHHHHHTCGG-----GGGCCHHHHH
T ss_pred CCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCC--------CcCCeeeHHHHHHHHcCCCC-----CCCccHHHHH
Confidence 2223445889999999999999999999999988765 35899997778876654310 2478999999
Q ss_pred HHHcCCcC-cccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 169 KELLDISL-SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 169 ~~~Lg~~l-~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~ 214 (522)
+++||.++ +|..++|||++ ||+++|+.|||.||+++++||+.|.+
T Consensus 160 ~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 160 HRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999 55789999999 99999999999999999999999964
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.91 E-value=1.3e-23 Score=222.27 Aligned_cols=174 Identities=24% Similarity=0.349 Sum_probs=152.5
Q ss_pred EEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCch
Q 009909 11 IHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLP 90 (522)
Q Consensus 11 i~~I~t~~~~el~~ll~~l~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~~~ 90 (522)
+.+|++ .++++.+++.+...++||||+||.+... +.+++++||||+. +.+|++|...+.
T Consensus 87 ~~~I~t--~~~L~~~~~~L~~~~~vavDtE~~~~~~---~~~~l~liQla~~--------------~~~ylid~l~l~-- 145 (410)
T 2hbj_A 87 PIWVDT--STELESMLEDLKNTKEIAVDLEHHDYRS---YYGIVCLMQISTR--------------ERDYLVDTLKLR-- 145 (410)
T ss_dssp CEEECS--HHHHHHHHHHHTTCSEEEEEEEEECSSS---SSCEEEEEEEECS--------------SCEEEEETTTTT--
T ss_pred cEEeCC--HHHHHHHHHHHhhCCceEEEeeecCCcC---CCCcEEEEEEEEC--------------CcEEEEechhhh--
Confidence 788888 7889999999888899999999987643 5689999999984 478999975542
Q ss_pred hhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHH
Q 009909 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (522)
Q Consensus 91 ~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~ 170 (522)
..+..|+++|+|++|.|||||+++|+..|.+.+|+ .+.++|| |++|+|+++++ .+||+.|+++
T Consensus 146 ~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi--------~~~~~fD-t~lAa~LL~~~--------~~~L~~L~~~ 208 (410)
T 2hbj_A 146 ENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL--------YVVGLFD-TYHASKAIGLP--------RHSLAYLLEN 208 (410)
T ss_dssp TTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC--------CCSSEEE-HHHHHHHHTCS--------CCSHHHHHHH
T ss_pred hhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCC--------CcCCEEE-cHHHHHHhCCC--------ccCHHHHHHH
Confidence 23457899999999999999999999999887765 2456999 99999999863 5899999999
Q ss_pred HcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009909 171 LLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 171 ~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~l 222 (522)
+||..++|+.+.+||..|||+++|+.|||.||++++.||+.|.++|++.|.+
T Consensus 209 ~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~ 260 (410)
T 2hbj_A 209 FANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKL 260 (410)
T ss_dssp HSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCH
T ss_pred HcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999999999999999999988764
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.91 E-value=1.8e-23 Score=218.88 Aligned_cols=175 Identities=27% Similarity=0.410 Sum_probs=153.2
Q ss_pred cEEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 009909 10 KIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (522)
Q Consensus 10 ~i~~I~t~~~~el~~ll~~l~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~~ 89 (522)
+|++|++ .++++.+++.+...++||||+||.+... +.+.+++||+++. +.+|++|...+.
T Consensus 2 ~~~~I~t--~~~l~~~~~~l~~~~~va~D~E~~~~~~---~~~~l~liqla~~--------------~~~~lid~~~l~- 61 (375)
T 1yt3_A 2 NYQMITT--DDALASLCEAVRAFPAIALDTEFVRTRT---YYPQLGLIQLFDG--------------EHLALIDPLGIT- 61 (375)
T ss_dssp CCEEECS--HHHHHHHHHHHTTSSEEEEEEEEECCSC---SSCEEEEEEEECS--------------SCEEEECGGGCS-
T ss_pred CeEEeCC--HHHHHHHHHHHcCCCeEEEEeeecCCCc---CCCceEEEEEecC--------------CcEEEEeCCCCC-
Confidence 4678887 7889999999888899999999998764 5689999999984 468999864442
Q ss_pred hhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHH
Q 009909 90 PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (522)
Q Consensus 90 ~~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~ 169 (522)
.+..|+++|+|++|.|||||+++|+..|.+.+|+ ...++|| |++++|++++. .++||+.|++
T Consensus 62 --~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi--------~~~~~fD-t~lAa~lL~~~-------~~~~L~~L~~ 123 (375)
T 1yt3_A 62 --DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE--------LPQPLID-TQILAAFCGRP-------MSWGFASMVE 123 (375)
T ss_dssp --CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSS--------CCSSEEE-HHHHHHHTTCC-------TTCCHHHHHH
T ss_pred --ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCC--------CCCcEEE-cHHHHHHcCCC-------CChhHHHHHH
Confidence 3467999999999999999999999999876665 1358999 99999999863 4799999999
Q ss_pred HHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009909 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 170 ~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~l 222 (522)
++||..++|+.+.+||..|||+++|+.|||.||++++.||+.|.++|++.|..
T Consensus 124 ~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~ 176 (375)
T 1yt3_A 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 (375)
T ss_dssp HHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999998864
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.84 E-value=2.4e-20 Score=198.78 Aligned_cols=184 Identities=23% Similarity=0.290 Sum_probs=151.5
Q ss_pred cEEEEcCCChHHHHHHHHHhcCC-CeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 009909 10 KIHLVTSTESPEFTHLARALSQS-SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIP 88 (522)
Q Consensus 10 ~i~~I~t~~~~el~~ll~~l~~~-~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~ 88 (522)
.+.+|++ .++++.+++.+..+ ++||||+||.+... +.+.+++||||+. ++.+|+||...+.
T Consensus 17 ~~~~I~t--~e~L~~~~~~L~~~~~~vavDtE~~~~~~---~~~~l~liQla~~-------------~~~~~lid~l~~~ 78 (440)
T 3cym_A 17 VPNVIDT--LPAFRDYCSELASSHGSLAADAERASGFR---YGHEDWLVQFKRD-------------GAGIGLLDPQALA 78 (440)
T ss_dssp CCCEECS--HHHHHHHHHHHHSCEEEEEEEEEECTTTS---SSCCEEEEEEEEE-------------TTEEEEECHHHHH
T ss_pred CCEeeCC--HHHHHHHHHHHHhcCCeEEEEeeecCCCC---CCCCEEEEEEEEC-------------CCcEEEEEcCCcc
Confidence 3467887 78899999988776 88999999987653 5688999999985 3568888763210
Q ss_pred c-hhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHH
Q 009909 89 L-PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANI 167 (522)
Q Consensus 89 ~-~~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L 167 (522)
. ...+..|+++|+|+ .||||++++|+.+|. .+|+ . +.++|| |++|+|++++ . .+||+.|
T Consensus 79 ~~~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi---~-----~~~~fD-t~lAa~lL~~-------~-~~gL~~L 138 (440)
T 3cym_A 79 AAGADWNDFNRAVGDA--VWILHDSLQDLPGFD-ELGM---E-----PQRLFD-TEIAARLLGL-------K-RFGLAAV 138 (440)
T ss_dssp HTTCCHHHHHHHHTTC--EEEESSHHHHHHHHH-HHTC---C-----CCEEEE-HHHHHHHTTC-------S-SCSHHHH
T ss_pred ccccCHHHHHHHHCCC--CEEEEcCHHHHHHHH-HcCC---c-----CCceeh-HHHHHHHhCC-------C-CCCHHHH
Confidence 0 01256799999997 699999999999997 5655 2 358999 8999999985 2 7899999
Q ss_pred HHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccchhcccc
Q 009909 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS---CSSISELDS 231 (522)
Q Consensus 168 ~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~l---~~~~~~~~~ 231 (522)
++.+||..++|..+.++|..|||+++|+.|||.||++++.||+.|..+|.+.|.+ .+++..+..
T Consensus 139 ~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~ 205 (440)
T 3cym_A 139 TEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALK 205 (440)
T ss_dssp HHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999876 455555543
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.68 E-value=5.2e-16 Score=171.70 Aligned_cols=180 Identities=18% Similarity=0.185 Sum_probs=143.4
Q ss_pred CccEEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC-
Q 009909 8 PLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS- 86 (522)
Q Consensus 8 ~~~i~~I~t~~~~el~~ll~~l~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~- 86 (522)
+..|.+|++ .++++++++.+.....|+||+|+++..+ ..+++..||+++. .+.++++++..
T Consensus 4 ~~~y~~I~~--~~~l~~~~~~l~~~~~va~DtEttgl~~---~~~~iv~I~~~~~-------------~g~~~yip~~~~ 65 (605)
T 2kfn_A 4 YDNYVTILD--EETLKAWIAKLEKAPVFAFDTETDSLDN---ISANLVGLSFAIE-------------PGVAAYIPVAHD 65 (605)
T ss_dssp SSSSEECCS--HHHHHHHHHHHHTSSSEEEEEEESCSCT---TTCCEEEEEEEEE-------------TTEEEEEECCCC
T ss_pred hhheEEecC--HHHHHHHHHhcccCCeEEEEEecCCCCc---ccCceEEEEEEEc-------------CCcEEEEecccc
Confidence 345778887 7889899998877788999999998764 4577888888863 25566664332
Q ss_pred -------CCchhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCc
Q 009909 87 -------IPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPK 159 (522)
Q Consensus 87 -------l~~~~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~ 159 (522)
+...++++.|+++|+++++.||+||+++|+..|.+ +|+ ...+.++| |++++|+++|+ .
T Consensus 66 ~~~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~-~Gi-------~l~~~~~D-T~laayLL~p~------~ 130 (605)
T 2kfn_A 66 YLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILAN-YGI-------ELRGIAFD-TMLESYILNSV------A 130 (605)
T ss_dssp STTCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHT-TTC-------CCCCEEEE-HHHHHHHHCTT------S
T ss_pred ccccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHH-CCC-------CCCCcccc-HHHHHHHhCCC------C
Confidence 22345677899999999999999999999999987 454 12346899 99999999985 3
Q ss_pred CCccHHHHHHHHcCCcCc-------ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Q 009909 160 ETKSLANICKELLDISLS-------KELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ-KGN 221 (522)
Q Consensus 160 ~~~sL~~L~~~~Lg~~l~-------K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~-~g~ 221 (522)
.+++|+.|++++||.... |+.+.++|..+|+ +++..||+.||.++++||..|.++|++ .+.
T Consensus 131 ~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l 199 (605)
T 2kfn_A 131 GRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGP 199 (605)
T ss_dssp SCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 579999999999987653 4555668988887 779999999999999999999999877 543
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.60 E-value=4.1e-15 Score=163.47 Aligned_cols=156 Identities=10% Similarity=-0.027 Sum_probs=129.6
Q ss_pred CCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCceEEEEe
Q 009909 32 SSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFK 111 (522)
Q Consensus 32 ~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~~~~~~~~L~~lL~d~~I~KVgh~ 111 (522)
....++|+|.....+ ..+.++.+|++.. +++|+|++.. ....+.|+++|+|+++.||+||
T Consensus 29 ~~~~aldtE~~~~~~---~~a~Lvgisla~~--------------~~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn 88 (592)
T 3pv8_A 29 ADKAALVVEVVEENY---HDAPIVGIAVVNE--------------HGRFFLRPET---ALADPQFVAWLGDETKKKSMFD 88 (592)
T ss_dssp CSEEEEEEECCSSSC---TTCCCCEEEEEET--------------TEEEEECHHH---HTTCHHHHHHHTCTTSEEEESS
T ss_pred ccCcEEEEEEcCCcc---CcccEEEEEEEcC--------------CceEEEccch---hhHHHHHHHHHhCCCCeEEEec
Confidence 356799999887775 5678888999884 4678886532 1245689999999999999999
Q ss_pred chhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCC---C
Q 009909 112 FKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSN---R 188 (522)
Q Consensus 112 ~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~~Lg~~l~K~~q~sdW~~---R 188 (522)
+|+|+..|.+ +|+ ...+++|| ||||+||++|+ ..+++|++|+++|||..+++.++..+|.. .
T Consensus 89 ~K~Dl~vL~~-~Gi-------~l~g~~fD-TmLAAYLL~p~------~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~ 153 (592)
T 3pv8_A 89 SKRAAVALKW-KGI-------ELCGVSFD-LLLAAYLLDPA------QGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAV 153 (592)
T ss_dssp HHHHHHHHHH-TTC-------CCCCEEEE-HHHHHHHHCGG------GCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCC
T ss_pred hHHHHHHHHH-cCC-------CCCCccch-HHHHHHHcCCC------CCCCCHHHHHHHHcCCCCchHHHhcCccccccC
Confidence 9999999987 455 22467999 99999999986 45799999999999999998888888863 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009909 189 PLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 189 PL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~l 222 (522)
|..+.+..|||.||.++++||+.|.++|++.++.
T Consensus 154 ~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~ 187 (592)
T 3pv8_A 154 PDEPVLAEHLVRKAAAIWELERPFLDELRRNEQD 187 (592)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 5568889999999999999999999999988764
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.32 E-value=1.2e-12 Score=146.95 Aligned_cols=154 Identities=14% Similarity=0.052 Sum_probs=119.9
Q ss_pred eEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCceEEEEec-
Q 009909 34 LVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF- 112 (522)
Q Consensus 34 ~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~~~~~~~~L~~lL~d~~I~KVgh~~- 112 (522)
+|+||+|+++..+ ...+++++|++... .+.++++|...+ ++.++.|+++|+ +++.||+||+
T Consensus 1 ~vv~D~ETtGl~~---~~d~i~~iqi~~~~------------~~~~~~~~p~~i--~~~l~~L~~~l~-~~~~kV~HNa~ 62 (698)
T 1x9m_A 1 MIVSDIEANALLE---SVTKFHCGVIYDYS------------TAEYVSYRPSDF--GAYLDALEAEVA-RGGLIVFHNGH 62 (698)
T ss_dssp CEEEEEEESSCGG---GCCCEEEEEEEETT------------TTEEEEECGGGH--HHHHHHHHHHHH-TTCCEEESSTT
T ss_pred CEEEEcCCCCcCC---CCCEEEEEEEEecC------------CCcEEEEChHHH--HHHHHHHHHHHh-cCCeEEEcCCh
Confidence 4899999998875 56799999999741 357888875432 346788999999 9999999999
Q ss_pred hhhHHHHHhhc------ccCCCccCccCC-CceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHc-------CCcC--
Q 009909 113 KQDLIYLSSTF------CSQGCDIGFDRV-EPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELL-------DISL-- 176 (522)
Q Consensus 113 k~Dl~~L~~~~------gi~g~~~~~~~~-~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~~L-------g~~l-- 176 (522)
++|+..|.+.+ |+ . .. +.++| |++++|+++++ ..+++|++|++++| |..+
T Consensus 63 kfD~~~L~~~~~~~~~~Gi-~------l~~~~~~D-TmlaayLL~p~------~~~~~L~~La~~~L~~sL~~~g~~lg~ 128 (698)
T 1x9m_A 63 KYDVPALTKLAKLQLNREF-H------LPRENCID-TLVLSRLIHSN------LKDTDMGLLRSGKLPGALEAWGYRLGE 128 (698)
T ss_dssp TTHHHHHHHHHHHHHCCCC-C------CCGGGEEE-HHHHHHHHTTT------SCCCTTTTSCGGGSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCc-c------CCCCcchh-HHHHHHHhCCC------CCCCCHHHHHHHHcccchhhhcccccc
Confidence 99999998753 54 1 23 57999 99999999985 34789999999998 4332
Q ss_pred ---c-----------ccc--cc-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009909 177 ---S-----------KEL--QC-SDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (522)
Q Consensus 177 ---~-----------K~~--q~-sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~ 221 (522)
+ |.. +. ++|.. +++++..||+.||.++++||+.|.++|++.+.
T Consensus 129 ~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 129 MKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred cccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 111 11 27864 66889999999999999999999988877664
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.80 E-value=5.4e-09 Score=113.77 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=98.6
Q ss_pred CeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCceEEEEec
Q 009909 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (522)
Q Consensus 33 ~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~~~~~~~~L~~lL~d~~I~KVgh~~ 112 (522)
+.+++|+|...... ....++.+|++.. +.+|+++ .....|+++|+| +.||+||+
T Consensus 11 ~~valDtE~~~~~~---~~a~Lvgi~la~~--------------~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~ 64 (540)
T 4dfk_A 11 EGAFVGFVLSRKEP---MWADLLALAAARG--------------GRVHRAP-------EPYKALRDLKEA--RGLLAKDL 64 (540)
T ss_dssp TTCEEEEEESSSCT---TTCCEEEEEEEET--------------TEEEECS-------SHHHHHTTCSSB--CSTTHHHH
T ss_pred CceEEEEEecCCcc---CcccEEEEEEEcC--------------CEEEEeh-------hhHHHHHHHHcC--CCEEEecc
Confidence 45899999988775 6678888999863 5778765 256789999998 88999999
Q ss_pred hhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCCCCCCH
Q 009909 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (522)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~~Lg~~l~K~~q~sdW~~RPL~~ 192 (522)
|+|+. + +|+ . .. .+|| |++++|+++|+ +++|++|+++|+|. |..
T Consensus 65 K~Dl~---~-~Gi---~----~~-~~fD-T~laAyLL~p~--------~~~L~~La~~yl~~----------~gk----- 108 (540)
T 4dfk_A 65 SVLAL---R-EGL---G----LP-PGDD-PMLLAYLLDPS--------NTTPEGVARRYGGE----------WTE----- 108 (540)
T ss_dssp HHHHH---H-TTC---C----CC-BCCC-HHHHHHHHCTT--------CCCHHHHHHHHTSC----------CCS-----
T ss_pred HHHHH---H-cCC---C----CC-ccee-HHHHHHHhCCC--------CCCHHHHHHHHhhh----------hcc-----
Confidence 99999 3 444 1 23 7899 99999999973 68999999999986 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Q 009909 193 EQKNYAAIDAHCLIEIFNIFQVKV-AQKGN 221 (522)
Q Consensus 193 ~Qi~YAA~DA~~ll~L~~~L~~~L-~~~g~ 221 (522)
+|+.||.++++||+.|.++| ++.++
T Consensus 109 ----~a~~DA~~t~~L~~~L~~~L~~~~~~ 134 (540)
T 4dfk_A 109 ----EAGERAALSERLFANLWGRLEGEERL 134 (540)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----chHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 37799999999999999999 54443
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.18 E-value=1.7e-05 Score=76.88 Aligned_cols=166 Identities=13% Similarity=0.100 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCE-----EE--EEeCC---C--
Q 009909 19 SPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASV-----VF--LLDLS---S-- 86 (522)
Q Consensus 19 ~~el~~ll~~l~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~-----v~--liDl~---~-- 86 (522)
.+++..+...+.....|.||+|+++..+ . .-.+++|+... .+. +..+. .| ++... .
T Consensus 24 ~~~~~~l~~~l~~~~~vviD~ETTGl~~---~--~~~IieIgav~-~~~------~~~g~i~~~~~f~~~v~P~~~~~i~ 91 (235)
T 3v9w_A 24 NAQLTGLCDRFRGFYPVVIDVETAGFNA---K--TDALLEIAAIT-LKM------DEQGWLMPDTTLHFHVEPFVGANLQ 91 (235)
T ss_dssp -----CHHHHTTTEEEEEEEEEESSSCT---T--TBCEEEEEEEE-EEE------CTTSCEEEEEEEEEEBCCCTTCBCC
T ss_pred cccccCchhcccCCcEEEEEEeCCCCCC---C--CCeEEEEEEEE-EEE------cCCCcccccceEEEEECCCCCCCCC
Confidence 4566777788888889999999998764 2 23466655431 000 00011 11 12221 0
Q ss_pred --------CC----------chhhHHHHHHhhCC-------CCceEEEEechhhHHHHHhhcccCCCcc-CccCCCceee
Q 009909 87 --------IP----------LPSIWELLKELFVS-------PDILKLGFKFKQDLIYLSSTFCSQGCDI-GFDRVEPYLD 140 (522)
Q Consensus 87 --------l~----------~~~~~~~L~~lL~d-------~~I~KVgh~~k~Dl~~L~~~~gi~g~~~-~~~~~~~~~D 140 (522)
+. ..+++..|.+++.+ ++...||||+++|+..|.+.+...|+.. .| ....++|
T Consensus 92 ~~~~~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~-~~~~~~D 170 (235)
T 3v9w_A 92 PEALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPF-HPFATFD 170 (235)
T ss_dssp HHHHHHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCE-EEEEEEE
T ss_pred HHHHHHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCC-CCCcEEE
Confidence 11 11244555555542 4678899999999999876543223210 00 0135789
Q ss_pred HHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009909 141 ITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220 (522)
Q Consensus 141 lt~La~yLl~~~~~~~~~~~~~sL~~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g 220 (522)
|+.+++.+.+ .++|..|++.+ |++... .+.++|..||.++.+|+..|.+++.+.+
T Consensus 171 -t~~la~~~~p---------~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 171 -TAALAGLALG---------QTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp -HHHHHHHHHS---------CCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHhC---------CCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777777764 36899999876 654321 1235699999999999999999999887
Q ss_pred CC
Q 009909 221 NS 222 (522)
Q Consensus 221 ~l 222 (522)
.+
T Consensus 226 ~~ 227 (235)
T 3v9w_A 226 GW 227 (235)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 12
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=97.86 E-value=2.3e-05 Score=89.29 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=87.8
Q ss_pred CeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCceEEEEec
Q 009909 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (522)
Q Consensus 33 ~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~~~~~~~~L~~lL~d~~I~KVgh~~ 112 (522)
..+++|+|..+ + ....+| +++|.. ++.++++++ . + +.|+++|+|+++ |+
T Consensus 305 ~~va~d~et~~--~---~~~~l~-vg~a~~-------------~g~a~yvp~-~----~--~~Lk~lLed~~i-----n~ 353 (832)
T 1bgx_T 305 AFVGFVLSRKE--P---MWADLL-ALAAAR-------------GGRVHRAPE-P----Y--KALRDLKEARGL-----LA 353 (832)
T ss_dssp CCBEEECSSSC--T---TTCCCC-EEECBS-------------SSEEECCSC-H----H--HHHHHCSSBCBT-----TH
T ss_pred ceEEEEEecCC--c---ccCcee-EEEEEc-------------CCCEEEEEC-C----H--HHHHHHHhCCCC-----Ch
Confidence 45788888654 2 123332 566664 366777655 2 1 579999999987 99
Q ss_pred hhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCCCCCCH
Q 009909 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (522)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~~Lg~~l~K~~q~sdW~~RPL~~ 192 (522)
|+|++.|.+ +|+ . +..++| |||++||+++. .++|++|++++ |. +|.
T Consensus 354 K~d~~~L~~-~Gi---~-----~~~~~D-t~laayLl~p~--------~~~l~~l~~~~-gk---------~~~------ 399 (832)
T 1bgx_T 354 KDLSVLALR-EGL---G-----LPPGDD-PMLLAYLLDPS--------NTTPEGVARRY-GG---------EWT------ 399 (832)
T ss_dssp HHHHHHHHH-HTC---C-----CCBCCC-HHHHHHHHCTT--------CCSTTHHHHHH-SC---------CCC------
T ss_pred HHHHHHHHH-cCC---c-----cCcccC-HHHHHHHcCCC--------CCCHHHHHHHh-CC---------Cch------
Confidence 999999987 565 1 237799 99999999972 68999999999 32 131
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Q 009909 193 EQKNYAAIDAHCLIEIFNIFQVKVA-QKG 220 (522)
Q Consensus 193 ~Qi~YAA~DA~~ll~L~~~L~~~L~-~~g 220 (522)
++ || .||.++++||+.|.++|. +.+
T Consensus 400 ~~--ya-~da~~~~~l~~~l~~~L~~~~~ 425 (832)
T 1bgx_T 400 EE--AG-ERAALSERLFANLWGRLEGEER 425 (832)
T ss_dssp SS--HH-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HH--HH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 11 88 799999999999999998 544
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.25 E-value=0.0028 Score=58.91 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=64.6
Q ss_pred hhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHH
Q 009909 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (522)
Q Consensus 91 ~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~ 170 (522)
+++..|..++.+ ...||||..+|+..|.+.+...|+.+ ....++|+..++..+. + ..+++|+.+++.
T Consensus 81 ~v~~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~---~~~~~iDt~~l~~~~~--~------~~~~~L~~l~~~ 147 (186)
T 2p1j_A 81 EVLPEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLD---WERPYIDTLALAKSLL--K------LRSYSLDSVVEK 147 (186)
T ss_dssp HHHHHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCC---CCCCEEEHHHHHHHHT--C------CSCCSHHHHHHH
T ss_pred HHHHHHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCC---CCCCEEeHHHHHHHHh--h------cCCCCHHHHHHH
Confidence 456667777775 36799999999999875432222211 1246889555555544 2 247899999986
Q ss_pred HcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009909 171 LLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220 (522)
Q Consensus 171 ~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g 220 (522)
+|++... ...|..||.++.+|+..+..+..++|
T Consensus 148 -~gi~~~~----------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 148 -LGLGPFR----------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp -TTCCSTT----------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred -cCCCCCC----------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5765421 24589999999999998875544443
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.23 E-value=0.0039 Score=58.12 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=67.4
Q ss_pred hhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHh---hccccCCCCCcCCccHHHH
Q 009909 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHL---HHKQLGRKLPKETKSLANI 167 (522)
Q Consensus 91 ~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yL---l~~~~~~~~~~~~~sL~~L 167 (522)
+++..|..++.+ .+.||||..+|+..|...++ ...++|+..++.+. ..+. ...++|+.|
T Consensus 72 ~v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~----------~~~~idt~~~~~~~~~~~~p~------~~~~~L~~l 133 (189)
T 1wlj_A 72 VARLEILQLLKG--KLVVGHDLKHDFQALKEDMS----------GYTIYDTSTDRLLWREAKLDH------CRRVSLRVL 133 (189)
T ss_dssp HHHHHHHHHHTT--SEEEESSHHHHHHHTTCCCT----------TCEEEEGGGCHHHHHHHTC-----------CCHHHH
T ss_pred HHHHHHHHHHCC--CEEEECCcHHHHHHHHHhCC----------CCceechHhhhhhhhcccCCC------CCCccHHHH
Confidence 456677788864 46799999999999976431 13578943332211 1111 247899999
Q ss_pred HHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009909 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (522)
Q Consensus 168 ~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~ 221 (522)
+++++|++.....+. .-|..||.++.+|+..+.+++++.+.
T Consensus 134 ~~~~lgi~~~~~~~~-------------H~Al~Da~ata~l~~~l~~~~~~~~~ 174 (189)
T 1wlj_A 134 SERLLHKSIQNSLLG-------------HSSVEDARATMELYQISQRIRARRGL 174 (189)
T ss_dssp HHHHTCCCCSCCTTC-------------CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCCCCC-------------cCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999899876432111 23889999999999999988877654
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=96.26 E-value=0.053 Score=51.57 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=61.3
Q ss_pred CceEEEEechhhHHHHHhhcccCCCc-cCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcccccc
Q 009909 104 DILKLGFKFKQDLIYLSSTFCSQGCD-IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQC 182 (522)
Q Consensus 104 ~I~KVgh~~k~Dl~~L~~~~gi~g~~-~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~~Lg~~l~K~~q~ 182 (522)
..+.||||..+|+..|.+.+...|+. +.+ ....++|+..++..+. + ..+|..+++. +|+++... +
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~-~~~~~iDt~~l~~~~~-~---------~~~L~~l~~~-~gi~~~~~-~- 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPF-HPFSSFDTATLAGLAY-G---------QTVLAKACQA-AGMEFDNR-E- 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCE-EEEEEEEHHHHHHHHH-S---------CCSHHHHHHH-TTCCCCTT-S-
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCc-cccceeeHHHHHHHHc-C---------CCCHHHHHHH-cCCCcCCC-C-
Confidence 45679999999999987654322321 000 0135789555555443 2 3589999886 58765311 1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009909 183 SDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 183 sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~l 222 (522)
.+.|..||.++.+|+..+..++.+.|.+
T Consensus 192 ------------~H~Al~Da~~ta~l~~~l~~~~~~~~~~ 219 (224)
T 2f96_A 192 ------------AHSARYDTEKTAELFCGIVNRWKEMGGW 219 (224)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ------------CCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1238899999999999999998887665
No 16
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=95.18 E-value=0.076 Score=50.83 Aligned_cols=110 Identities=17% Similarity=0.194 Sum_probs=67.7
Q ss_pred hhHHHHHHhhCCC--CceEEEEec-hhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccc-CCCCC-cCCccHH
Q 009909 91 SIWELLKELFVSP--DILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQL-GRKLP-KETKSLA 165 (522)
Q Consensus 91 ~~~~~L~~lL~d~--~I~KVgh~~-k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~-~~~~~-~~~~sL~ 165 (522)
++.+.|..++..- ..+.|+||. .+|+..|.+.+.-.|+. +.....++|+..++..+..... ....| ..+++|.
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~--~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~ 175 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGAR--LPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLG 175 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCC--CCTTCEEEEHHHHHHHHHHHC----------CCSHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCC--CCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHH
Confidence 3556777888762 256799999 99999987654322321 1111357995455555541000 00001 2478999
Q ss_pred HHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009909 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (522)
Q Consensus 166 ~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~ 218 (522)
.++++++|++... .+.|..||.++.+|+..+.+++.+
T Consensus 176 ~l~~~~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 176 SLFHRYFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888876421 245899999999999998877653
No 17
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=94.84 E-value=0.087 Score=50.98 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=69.5
Q ss_pred hhHHHHHHhhCC--CCceEEEEec-hhhHHHHHhhcccCCCccCcc-CCCceeeHHHHHHHhhccccC-CCCCcCCccHH
Q 009909 91 SIWELLKELFVS--PDILKLGFKF-KQDLIYLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLG-RKLPKETKSLA 165 (522)
Q Consensus 91 ~~~~~L~~lL~d--~~I~KVgh~~-k~Dl~~L~~~~gi~g~~~~~~-~~~~~~Dlt~La~yLl~~~~~-~~~~~~~~sL~ 165 (522)
+++..|..++.+ +..+-|+||. .+|+..|.+.+.-.|+. +. ....++|+..++..+...... ......+++|+
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~--~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~ 180 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTP--SPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLG 180 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSC--CTTTTCEEEEHHHHHHHHHHHHCC------CCCSHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCC--CCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHH
Confidence 456677777776 2256699995 99999997654333432 11 112578965556544421000 00013578999
Q ss_pred HHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009909 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (522)
Q Consensus 166 ~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~ 218 (522)
+|+++++|++.... +-|..||.++.+|+..+..++.+
T Consensus 181 ~l~~~~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~~~ 217 (242)
T 3mxm_B 181 SIYTRLYWQAPTDS----------------HTAEGDDLTLLSICQWKPQALLQ 217 (242)
T ss_dssp HHHHHHHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876321 22889999999998888766553
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=94.83 E-value=0.29 Score=52.26 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=63.1
Q ss_pred hhHHHHHHhhCCCCceEEEEe-chhhHHHHHhhcccCCCccCccC----CCceeeHHHHHHHhhc--cccCCC-----CC
Q 009909 91 SIWELLKELFVSPDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDR----VEPYLDITSIYNHLHH--KQLGRK-----LP 158 (522)
Q Consensus 91 ~~~~~L~~lL~d~~I~KVgh~-~k~Dl~~L~~~~gi~g~~~~~~~----~~~~~Dlt~La~yLl~--~~~~~~-----~~ 158 (522)
++...|..++..++.+.|||| +.+|...|...+.-.++.+ +.. ....+|+..++..+.. +. +.. ..
T Consensus 83 evl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~-~~~~w~~~~~~iDtl~l~r~~~~~~~~-~~~wP~~~~~ 160 (482)
T 2qxf_A 83 AFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP-YAWSWQHDNSRWDLLDVMRACYALRPE-GINWPENDDG 160 (482)
T ss_dssp HHHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCS-SGGGTGGGCEEEEHHHHHHHHHHHCCT-TSCCCBCTTS
T ss_pred HHHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCc-cccccccCCceeeHHHHHHHHHHhCcc-cccCcccccC
Confidence 345566777875567789999 9999998875433222221 110 1457786556554431 10 000 01
Q ss_pred cCCccHHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 159 KETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (522)
Q Consensus 159 ~~~~sL~~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~ 215 (522)
..+++|+.|++. +|++... .+-|..||.++..|+..+..+
T Consensus 161 ~~s~kL~~L~~~-~Gi~~~~----------------aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 161 LPSFRLEHLTKA-NGIEHSN----------------AHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp SBCCCHHHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-cCCCCCC----------------CCCHHHHHHHHHHHHHHHHHh
Confidence 347899999875 4765421 123778999999998887643
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=93.94 E-value=0.22 Score=50.18 Aligned_cols=111 Identities=13% Similarity=0.063 Sum_probs=68.8
Q ss_pred hhHHHHHHhhCC--CCceEEEEe-chhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccC-CCCCcCCccHHH
Q 009909 91 SIWELLKELFVS--PDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG-RKLPKETKSLAN 166 (522)
Q Consensus 91 ~~~~~L~~lL~d--~~I~KVgh~-~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~-~~~~~~~~sL~~ 166 (522)
+++..|.+++.+ +..+.|+|| ..+|+..|.+.+.-.|+...+ ....++|...++..+...... ...+..+++|++
T Consensus 103 ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~-~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~ 181 (314)
T 3u3y_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (314)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHTTC-------CCCCSHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC-CCceEEeHHHHHHHHHHHhCccccccCCCCCHHH
Confidence 455667777776 225679999 999999997654333432100 112378944434433321100 001125789999
Q ss_pred HHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009909 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (522)
Q Consensus 167 L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~ 218 (522)
++++++|++.... . -|..||.++.+|+..+.+++.+
T Consensus 182 L~~~l~gi~~~~a---H-------------rAl~DA~ata~lf~~l~~~~l~ 217 (314)
T 3u3y_B 182 IYTRLYWQAPTDS---H-------------TAEGHVLTLLSICQWKPQALLQ 217 (314)
T ss_dssp HHHHHHSSCCSCS---S-------------SHHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHhcCCCCCCC---C-------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999889876321 1 2889999999999988776643
No 20
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=93.71 E-value=0.28 Score=45.25 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=62.3
Q ss_pred hhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCc-cCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHH
Q 009909 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCD-IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (522)
Q Consensus 91 ~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~-~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~ 169 (522)
+++..|..++.+. ..||||..+|+..|.+.+.-.|+. |.+.....++|+..++..+ .++ ..++|..+++
T Consensus 84 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~-~p~-------~~~~L~~l~~ 153 (194)
T 2gui_A 84 EVADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKM-FPG-------KRNSLDALCA 153 (194)
T ss_dssp HHHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHH-STT-------SCCSHHHHHH
T ss_pred HHHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHH-cCC-------CCCCHHHHHH
Confidence 4566677788653 458999999999987654322321 1011014689954454443 332 3579999998
Q ss_pred HHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (522)
Q Consensus 170 ~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~ 215 (522)
. +|++.... .. +-|..||.++.+|+..+..+
T Consensus 154 ~-~gi~~~~~-~~-------------H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 154 R-YEIDNSKR-TL-------------HGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp H-TTCCCTTC-SS-------------CCHHHHHHHHHHHHHHHTC-
T ss_pred H-cCcCCCCC-CC-------------CChHHHHHHHHHHHHHHHhc
Confidence 6 57664311 01 22889999999999887643
No 21
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=91.03 E-value=0.69 Score=42.77 Aligned_cols=100 Identities=9% Similarity=0.115 Sum_probs=61.7
Q ss_pred hHHHHHHhhCCCC-----ceEEEEechhhHH-HHHhhcccCCCccCccC-CCceeeHHHHHHHhhccccCCCCCcCCccH
Q 009909 92 IWELLKELFVSPD-----ILKLGFKFKQDLI-YLSSTFCSQGCDIGFDR-VEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (522)
Q Consensus 92 ~~~~L~~lL~d~~-----I~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~~-~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL 164 (522)
++..|..++.+.. ..-|+||...|+. .|.+.+...|+. +.. ...++|+..++..+.... ...++|
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~--~p~~~~~~~dt~~l~~~~~~~~------~~~~~L 159 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK--YPPFAKKWINIRKSYGNFYKVP------RSQTKL 159 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCC--CCGGGSEEEEHHHHHHHHHTCC------GGGCSH
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCC--CcccccceEEHHHHHHHHhCCC------CccchH
Confidence 4555666666432 3569999999996 886543222321 111 126899666665544211 235799
Q ss_pred HHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 165 ANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (522)
Q Consensus 165 ~~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~ 215 (522)
+.+++. +|++... +. +-|..||.++.+|+..+.++
T Consensus 160 ~~l~~~-~gi~~~~--~~-------------H~Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 160 TIMLEK-LGMDYDG--RP-------------HCGLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp HHHHHH-TTCCCCS--CT-------------TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-cCCCCCC--Cc-------------cCcHHHHHHHHHHHHHHHHC
Confidence 999977 5766431 11 22889999999999888643
No 22
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=90.07 E-value=0.27 Score=44.52 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=22.8
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhc
Q 009909 388 EPRELIDQTSKEKRVLLTRDAKLLRHQY 415 (522)
Q Consensus 388 ~d~~ll~~A~~e~RiiLTrd~~l~~~~~ 415 (522)
.|..++.+|.+.+.+|+|.|..+-+.+.
T Consensus 85 ~D~~lIaLA~~l~~~lvT~D~~l~~vA~ 112 (165)
T 2lcq_A 85 ADIEVLALAYELKGEIFSDDYNVQNIAS 112 (165)
T ss_dssp HHHHHHHHHHHHTCCEECCCHHHHHHHH
T ss_pred HHHHHHHhHHHhCCeEEcCcHHHHHHHH
Confidence 4678999999999999999987655443
No 23
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.61 E-value=0.31 Score=35.49 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=13.3
Q ss_pred CceeecCCCCeEEec
Q 009909 489 LQFWQCMDCNQLYWE 503 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~ 503 (522)
..-+.|+.||-+||.
T Consensus 35 ~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 35 GDRWACGKCGYTEWK 49 (50)
T ss_dssp SSEEECSSSCCEEEC
T ss_pred CCeEECCCCCCEEEC
Confidence 467899999999996
No 24
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=87.66 E-value=7.9 Score=34.72 Aligned_cols=33 Identities=15% Similarity=-0.058 Sum_probs=23.7
Q ss_pred hhHHHHHHhhCCC----CceEEEEechhhHHHHHhhc
Q 009909 91 SIWELLKELFVSP----DILKLGFKFKQDLIYLSSTF 123 (522)
Q Consensus 91 ~~~~~L~~lL~d~----~I~KVgh~~k~Dl~~L~~~~ 123 (522)
++...|..++.+- ..+.||||+.+|+..|.+.+
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~ 119 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYM 119 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHH
Confidence 3455666777651 34679999999999998653
No 25
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=83.80 E-value=4.3 Score=40.17 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=62.3
Q ss_pred hhHHHHHHhhCCC-----CceEEEEechhhHH-HHHhhcccCCCccCcc-CCCceeeHHHHHHHhhccccCCCCCcCCcc
Q 009909 91 SIWELLKELFVSP-----DILKLGFKFKQDLI-YLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLGRKLPKETKS 163 (522)
Q Consensus 91 ~~~~~L~~lL~d~-----~I~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~-~~~~~~Dlt~La~yLl~~~~~~~~~~~~~s 163 (522)
+++..|..++.+. ...-|+||...|+. .|...+...|+. +. ....++|+..++..+... +...++
T Consensus 155 evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~--~p~~~~~~iDt~~l~~~~~~~------~~~~~~ 226 (299)
T 1zbh_A 155 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK--YPPFAKKWINIRKSYGNFYKV------PRSQTK 226 (299)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBC--CCGGGSEEEEHHHHHHHHHTC------CGGGCS
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCC--CCcccchHHHHHHHHHHHhCC------CCCCcc
Confidence 3455666677653 14669999999998 886543222321 11 123688955455444321 123589
Q ss_pred HHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 164 LANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (522)
Q Consensus 164 L~~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~ 215 (522)
|.+|++. +|++... .. +-|..||.++.+|+..+..+
T Consensus 227 L~~l~~~-~gi~~~g--~~-------------H~Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 227 LTIMLEK-LGMDYDG--RP-------------NCGLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp HHHHHHH-TTCCCCS--CT-------------TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-cCCCCCC--CC-------------CChHHHHHHHHHHHHHHHHh
Confidence 9999976 5765421 11 22889999999999887643
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.15 E-value=0.5 Score=46.00 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=26.2
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecccchh
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAY 508 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~GsH~~ 508 (522)
.+|.-|+-.| ++....+ |. ..+.+..||.||+|-|...+|.
T Consensus 199 ~~C~GC~~~l-----ppq~~~~-----------i~-~~~~Iv~Cp~CgRIL~~~~~~~ 239 (256)
T 3na7_A 199 QACGGCFIRL-----NDKIYTE-----------VL-TSGDMITCPYCGRILYAEGAYE 239 (256)
T ss_dssp TBCTTTCCBC-----CHHHHHH-----------HH-HSSSCEECTTTCCEEECSCC--
T ss_pred CccCCCCeee-----CHHHHHH-----------HH-CCCCEEECCCCCeeEEeCcchh
Confidence 5899999865 2223222 11 2467889999999877666664
No 27
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=83.13 E-value=19 Score=40.52 Aligned_cols=162 Identities=13% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC------C-CchhhHHHHHHhhC--C
Q 009909 32 SSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS------I-PLPSIWELLKELFV--S 102 (522)
Q Consensus 32 ~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~------l-~~~~~~~~L~~lL~--d 102 (522)
-.+++||.|...... .....-.+++|+... ..++.++...... . +..+++..+..++. |
T Consensus 135 l~ilsfDIEt~~~~~--p~~~~d~Ii~Is~~~----------~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~d 202 (775)
T 1qht_A 135 LTMLAFAIATLYHEG--EEFGTGPILMISYAD----------GSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKD 202 (775)
T ss_dssp CCEEEEEEEECCCTT--CCTTCSCEEEEEEEC----------SSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEEEcCCCC--CCCCCCcEEEEEEEe----------cCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcC
Confidence 368999999985221 011223367776541 0112322211000 1 11234444444443 6
Q ss_pred CCceEEEEech-hhHHHHHhhcccCCCccCccC-------------------CCceeeHHHHHHHhhccccCCCCCcCCc
Q 009909 103 PDILKLGFKFK-QDLIYLSSTFCSQGCDIGFDR-------------------VEPYLDITSIYNHLHHKQLGRKLPKETK 162 (522)
Q Consensus 103 ~~I~KVgh~~k-~Dl~~L~~~~gi~g~~~~~~~-------------------~~~~~Dlt~La~yLl~~~~~~~~~~~~~ 162 (522)
|++ .+|||.. +|+-.|......+|+...+.. -...+|+-.++..... ..++
T Consensus 203 PDi-ivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~--------l~sy 273 (775)
T 1qht_A 203 PDV-LITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTIN--------LPTY 273 (775)
T ss_dssp CSE-EEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSC--------CSCC
T ss_pred CCE-EEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcC--------cCcC
Confidence 775 4899986 688877543222232211100 1346796555544322 2478
Q ss_pred cHHHHHHHHcCCcCcc--ccccc-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 163 SLANICKELLDISLSK--ELQCS-DWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 163 sL~~L~~~~Lg~~l~K--~~q~s-dW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~ 214 (522)
+|+++++.+||..... ..+.. -|...+-...-+.|...||..++.|+..+..
T Consensus 274 sL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 274 TLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp CHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999975321 11222 2544432256689999999999999877654
No 28
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=82.76 E-value=5 Score=40.75 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=62.3
Q ss_pred hhHHHHHHhhCCC-----CceEEEEechhhHH-HHHhhcccCCCccCcc-CCCceeeHHHHHHHhhccccCCCCCcCCcc
Q 009909 91 SIWELLKELFVSP-----DILKLGFKFKQDLI-YLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLGRKLPKETKS 163 (522)
Q Consensus 91 ~~~~~L~~lL~d~-----~I~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~-~~~~~~Dlt~La~yLl~~~~~~~~~~~~~s 163 (522)
+++..|..++.+. ..+.|+||..+|+. .|...+...|+. +. ....++|+..++..+... +...++
T Consensus 205 eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~--~p~~~~~~iDt~~l~~~~~~~------~~~~~~ 276 (349)
T 1zbu_A 205 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK--YPPFAKKWINIRKSYGNFYKV------PRSQTK 276 (349)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBC--CCGGGSEEEEHHHHHHHHHTC------CGGGGS
T ss_pred HHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCC--CccccchHHHHHHHHHHHhcC------CCCCCC
Confidence 3455566677653 14679999999999 886543222321 11 123688965555444321 123589
Q ss_pred HHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 164 LANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (522)
Q Consensus 164 L~~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~ 215 (522)
|..|++. +|++... .. +-|..||.++.+|+..+..+
T Consensus 277 L~~l~~~-~gi~~~g--~~-------------HrAl~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 277 LTIMLEK-LGMDYDG--RP-------------HCGLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp HHHHHHH-TTCCCCS--CT-------------TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-cCCCCCC--CC-------------CCHHHHHHHHHHHHHHHHHh
Confidence 9999876 5765421 11 22889999999999887643
No 29
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=81.26 E-value=0.97 Score=35.10 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=20.2
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvY 501 (522)
-.|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKL---S--------------------ADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEE---C--------------------TTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 479999998842 1 012456799999998
No 30
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=80.96 E-value=0.95 Score=35.04 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=20.6
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvY 501 (522)
.-+|+.|.++|.. . .....-+|+.||+.|
T Consensus 8 iL~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEY---H--------------------QDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEE---E--------------------TTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 3589999998842 1 012455799999998
No 31
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=80.93 E-value=0.93 Score=35.11 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=20.2
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvY 501 (522)
-+|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVF---D--------------------KSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEE---E--------------------TTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 479999998842 1 012455799999998
No 32
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=80.73 E-value=30 Score=39.32 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=88.1
Q ss_pred CCCeEEEEEeE-eCC---CCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC----------------Cch
Q 009909 31 QSSLVGLDAEW-KPQ---RSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI----------------PLP 90 (522)
Q Consensus 31 ~~~~Vg~D~E~-~~~---~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l----------------~~~ 90 (522)
.-.+++||.|. .+. ++. .....--++||+... ..+...++++..... +..
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~-~~~~~d~Ii~Is~~~---------~~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPD-SQKAEFPIISIALAG---------SDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEY 258 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCC-TTTCCSCEEEEEEEE---------TTSCEEEEEECSSCCCCCCEEETTEEEEEESSHH
T ss_pred CceEEEEEEEeCcCCCCCCCC-ccccCCcEEEEEEEc---------cCCCcEEEEEeCCcccccccCCCCCeEEEeCCHH
Confidence 34679999999 432 221 011123588887741 011235666543211 123
Q ss_pred hhHHHHHHhhCCCCceEEEEech-hhHHHHHhhcccCCCcc---CccC---------CCceeeHHHHHH------Hhhcc
Q 009909 91 SIWELLKELFVSPDILKLGFKFK-QDLIYLSSTFCSQGCDI---GFDR---------VEPYLDITSIYN------HLHHK 151 (522)
Q Consensus 91 ~~~~~L~~lL~d~~I~KVgh~~k-~Dl~~L~~~~gi~g~~~---~~~~---------~~~~~Dlt~La~------yLl~~ 151 (522)
+++..+..++.+.+ ..+|||.. +|+-.|......+|+.. .+.. -...+|+-.+.. |....
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~ 337 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 337 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc
Confidence 56777778888876 57999986 79988754332234320 0110 133578432221 11110
Q ss_pred ccCCCCCcCCccHHHHHHHHcCCcCcccccccCCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 009909 152 QLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLT-EEQKNYAAIDAHCLIEIFN 210 (522)
Q Consensus 152 ~~~~~~~~~~~sL~~L~~~~Lg~~l~K~~q~sdW~~RPL~-~~Qi~YAA~DA~~ll~L~~ 210 (522)
...+++|.++++.+||..-..- ...|. ... ..-+.|.-.||..++.|+.
T Consensus 338 ------kl~sysL~~Va~~~Lg~~K~dv--~~~i~--~~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 338 ------KYNEYNLDAVAKALLGTSKVKV--DTLIS--FLDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp ------CCSSCSHHHHHHHHHCCCCC----SSCTT--TCCHHHHHHHHHHHHHHHHHTTT
T ss_pred ------ccccccHHHHHHHHhCCCCcch--hHhhh--hccHHHHHHHHHHHHHHHHHHHH
Confidence 1247899999999999642111 12232 223 4558999999999999954
No 33
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=80.26 E-value=13 Score=38.20 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=42.5
Q ss_pred eeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcC-cccccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009909 138 YLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISL-SKELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (522)
Q Consensus 138 ~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~~Lg~~l-~K~~q~sd-W~~RPL~~~Qi~YAA~DA~~ll~L~~~L 212 (522)
++|+-.++..+-... ..+++|+++++.+||..- +-..+... |. .-...-+.|...||..+++|+..+
T Consensus 267 ~lD~~~~~k~~~~~~------l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~--~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 267 ILDYLDLYKKFAFTN------LPSFSLESVAQHETKKGKLPYDGPINKLRE--TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ECCHHHHHHHHTCCC------CSCCSHHHHHHHHHSCCCCCCSSCGGGHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhhcCcCc------ccCCCHHHHHHHHhCCCCCCcHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678655555531110 257999999999998642 21122222 32 011344899999999999999884
No 34
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=79.68 E-value=0.98 Score=35.18 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=20.6
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvY 501 (522)
.-+|+.|.++|.. . .....-+|+.||+.|
T Consensus 8 iL~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEF---Q--------------------RAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEE---E--------------------TTTTEEEETTTTEEE
T ss_pred heECCCCCCcCEE---e--------------------CCCCEEEcCCCCcee
Confidence 3589999998842 1 012456799999998
No 35
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=75.13 E-value=1.2 Score=32.86 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=24.1
Q ss_pred cccCCCCccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009909 452 RCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 452 RC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
+|..|+-.--+..-+.+ ..||+++ ++..-+-|.||.||-
T Consensus 5 ~C~vCGyvYd~~~Gdp~---------~gi~pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPD---------DGVNPGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp EETTTCCEECTTTCBGG---------GTBCTTCCGGGSCTTCBCTTTCC
T ss_pred ECCCCCeEECCCcCCcc---------cCcCCCCChhHCCCCCcCcCCCC
Confidence 79999975421111111 2356654 566677899999995
No 36
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=71.23 E-value=2.6 Score=32.51 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=20.0
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvY 501 (522)
.-+|+.|.++|.. .. ...--.|+.||+.|
T Consensus 10 iL~CP~ck~~L~~---~~--------------------~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRY---LE--------------------SEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEE---ET--------------------TTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeE---eC--------------------CCCEEEcCCCCccc
Confidence 3589999998842 10 12234699999998
No 37
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=70.98 E-value=1.7 Score=34.24 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=24.8
Q ss_pred CceeecCCCCeEEecccchhhHHhhhhhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYLFIFLTPAY 517 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r~~~~~~~~ 517 (522)
-..|.|+.||-.|+...+.+|+-.+|.+|
T Consensus 34 Vp~~~C~~CGE~~~~~e~~~~~~~~~~~f 62 (78)
T 3ga8_A 34 IHGLYCVHCEESIMNKEESDAFMAQVKAF 62 (78)
T ss_dssp EEEEEETTTCCEECCHHHHHHHHHHHHHH
T ss_pred ceeEECCCCCCEEECHHHHHHHHHHHHHH
Confidence 36899999999999999999977776654
No 38
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=70.71 E-value=2.7 Score=31.01 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=14.6
Q ss_pred CceeecCCCCeEEeccc
Q 009909 489 LQFWQCMDCNQLYWEVM 505 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~Gs 505 (522)
...+.|+.||-.||.+.
T Consensus 34 ~dr~~C~kCgyt~~~~~ 50 (55)
T 2k4x_A 34 ADRYSCGRCGYTEFKKA 50 (55)
T ss_dssp SSEEECTTTCCCEECCC
T ss_pred CCEEECCCCCCEEEeCc
Confidence 45889999999999874
No 39
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=69.65 E-value=2.8 Score=29.93 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=10.6
Q ss_pred ceeecCCCCeEEe
Q 009909 490 QFWQCMDCNQLYW 502 (522)
Q Consensus 490 ~F~~C~~CgkvYW 502 (522)
.-..|+.||-+|=
T Consensus 23 gelvC~~CG~v~~ 35 (50)
T 1pft_A 23 GEIVCAKCGYVIE 35 (50)
T ss_dssp TEEEESSSCCBCC
T ss_pred CeEECcccCCccc
Confidence 4588999999873
No 40
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=68.04 E-value=33 Score=39.35 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=64.2
Q ss_pred hhHHHHHHhhC--CCCceEEEEech-hhHHHHHhhcccCCCcc--Ccc---------------------------CC--C
Q 009909 91 SIWELLKELFV--SPDILKLGFKFK-QDLIYLSSTFCSQGCDI--GFD---------------------------RV--E 136 (522)
Q Consensus 91 ~~~~~L~~lL~--d~~I~KVgh~~k-~Dl~~L~~~~gi~g~~~--~~~---------------------------~~--~ 136 (522)
+++..+..++. ||+|+ +|||.. +|+-.|....-.+|+.. .+. .+ .
T Consensus 315 eLL~~F~~~i~~~DPDII-vGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR 393 (919)
T 3iay_A 315 EMLSNWRNFIIKVDPDVI-IGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGR 393 (919)
T ss_dssp HHHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTC
T ss_pred HHHHHHHHHHHHhCCCEE-EecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCe
Confidence 34555555543 68874 799995 79888743211122210 000 00 1
Q ss_pred ceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHcCCcCcc--cccccCC-CCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 009909 137 PYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSK--ELQCSDW-SNRPLT-EEQKNYAAIDAHCLIEIFNIF 212 (522)
Q Consensus 137 ~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~~Lg~~l~K--~~q~sdW-~~RPL~-~~Qi~YAA~DA~~ll~L~~~L 212 (522)
..+|+-.++..... ..+++|.++++.+||..... ..++.+| ...+-. ..-+.|...||..+++|+..+
T Consensus 394 ~~lDl~~~~k~~~~--------l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 394 LQLDLLQFIQREYK--------LRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEEEHHHHHHHHCC--------CSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEhHHHHHhhcC--------CCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36786555443221 35899999999999964321 1223322 211111 234789999999999999887
Q ss_pred H
Q 009909 213 Q 213 (522)
Q Consensus 213 ~ 213 (522)
.
T Consensus 466 ~ 466 (919)
T 3iay_A 466 M 466 (919)
T ss_dssp T
T ss_pred h
Confidence 3
No 41
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=66.19 E-value=3.1 Score=30.38 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=24.4
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.-.+..=+. ...||+++ ++..-+-|.||.||-
T Consensus 4 y~C~~CGyvYd~~~Gdp---------~~gi~pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDP---------DSGIKPGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp EECSSSCCCCCTTTCCT---------TTTCCSSCCTTSSCTTCCCSSSCC
T ss_pred EEeCCCCeEEcCCcCCc---------ccCcCCCCchHHCCCCCcCCCCCC
Confidence 37999997542110010 12466665 455677899999996
No 42
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=64.64 E-value=0.8 Score=39.42 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=22.8
Q ss_pred ceeecCCCCeEEecccchhhHHhhhhhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYLFIFLTPAY 517 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r~~~~~~~~ 517 (522)
..|.|+.||..|+......+...++..+
T Consensus 35 ~~~~C~~CGE~~~d~e~~~~~~~~~~e~ 62 (133)
T 3o9x_A 35 HGLYCVHCEESIMNKEESDAFMAQVKAF 62 (133)
T ss_dssp EEEEESSSSCEECCHHHHHHHHHHHHHH
T ss_pred ceeECCCCCCEeecHHHHHHHHHHHHHH
Confidence 6999999999999988887766665543
No 43
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=64.08 E-value=2.7 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=13.2
Q ss_pred CceeecCCCCeEEecc
Q 009909 489 LQFWQCMDCNQLYWEV 504 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~G 504 (522)
..-|.|+.||+.|=.|
T Consensus 43 tGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 43 TGIWQCSYCDYKFTGG 58 (83)
T ss_dssp TTEEEETTTCCEEECC
T ss_pred CCeEECCCCCCEecCC
Confidence 3589999999998555
No 44
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=63.90 E-value=2.1 Score=34.24 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=25.3
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
.-+|..|+-.-.+..-+. ...||+++ |+..-+-|.||.||-
T Consensus 27 ~y~C~vCGyvYD~~~Gdp---------~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWP---------EDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp EEEETTTCCEEETTTCBT---------TTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred eEEeCCCCEEEcCCcCCc---------ccCcCCCCChhHCCCCCcCCCCCC
Confidence 357999997542111011 12466665 455667899999996
No 45
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=63.09 E-value=6.9 Score=38.91 Aligned_cols=102 Identities=15% Similarity=0.220 Sum_probs=56.6
Q ss_pred hHHHHHHhhCCCCceEEEEec------hhhH-HHHHhhcccCCCccCcc-CCCceeeHHHHHHHhhccccCCCCCcCCcc
Q 009909 92 IWELLKELFVSPDILKLGFKF------KQDL-IYLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLGRKLPKETKS 163 (522)
Q Consensus 92 ~~~~L~~lL~d~~I~KVgh~~------k~Dl-~~L~~~~gi~g~~~~~~-~~~~~~Dlt~La~yLl~~~~~~~~~~~~~s 163 (522)
++..|..++.+..+ ||||+ ..|+ ..|.+.+...|+. +. ....++|+..++..+.... ........++
T Consensus 98 vl~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~--~p~~~~~~iDt~~l~~~~~~~~-~~~~~~~~~~ 172 (308)
T 3cg7_A 98 VYEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQ--MPAFFRQYINLYKIFTNEMDRM-GPKELSATTN 172 (308)
T ss_dssp HHHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCC--CCGGGSEEEEHHHHHHHHHHHH-CCCCCCCCSH
T ss_pred HHHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCC--CchhhcceeeHHHHHHHHhccc-cccccccCcC
Confidence 45555666665322 45555 8998 5665433222321 11 1135789656666554321 0000012578
Q ss_pred HHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 164 LANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 164 L~~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~ 214 (522)
|.++++ .+|++.... .+-|..||.++.+|+..+..
T Consensus 173 L~~l~~-~~gi~~~~~---------------~HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 173 IGKMNE-YYDLPTIGR---------------AHDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp HHHHHH-HTTCCCCSC---------------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCCCC---------------CcCHHHHHHHHHHHHHHHHH
Confidence 999995 557654211 02288999999999988764
No 46
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=62.67 E-value=3.1 Score=30.35 Aligned_cols=39 Identities=18% Similarity=0.408 Sum_probs=23.9
Q ss_pred cccCCCCccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009909 452 RCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 452 RC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
+|..|+-.-....=+.+ ..||+++ ++..-+-|.||.||-
T Consensus 4 ~C~~CGyvYd~~~Gdp~---------~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 4 SCKICGYIYDEDEGDPD---------NGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp EESSSSCEEETTTCBGG---------GTBCTTCCGGGSCTTCBCTTTCC
T ss_pred EeCCCCeEECCCcCCcc---------cCcCCCCCHhHCCCCCcCCCCCC
Confidence 69999975421111111 2356655 556677899999996
No 47
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=62.28 E-value=38 Score=38.11 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=81.9
Q ss_pred CCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC-------------CchhhHHHHHH
Q 009909 32 SSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI-------------PLPSIWELLKE 98 (522)
Q Consensus 32 ~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l-------------~~~~~~~~L~~ 98 (522)
-.+++||.|... . + .+++|+..+ + ....++.++.... +..+++..+..
T Consensus 153 lrilsfDIE~~~-~------g--~i~~I~~~~-----~-----~~~~v~~l~~~~~~~~~~~~~V~~f~~E~~lL~~f~~ 213 (786)
T 3k59_A 153 LKWVSIDIETTR-H------G--ELYCIGLEG-----C-----GQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNA 213 (786)
T ss_dssp CCEEEEEEEECT-T------S--CEEEEEEEE-----T-----TEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHH
T ss_pred CeEEEEEEEEcC-C------C--CEEEEEecC-----C-----CCCeEEEEecCCCCCCCCCceEEEeCCHHHHHHHHHH
Confidence 478999999762 1 1 266666642 0 1245666654320 11234444444
Q ss_pred hhC--CCCceEEEEech-hhHHHHHhhcccCCCccCccC----------------------CCceeeHHHHHHHhhcccc
Q 009909 99 LFV--SPDILKLGFKFK-QDLIYLSSTFCSQGCDIGFDR----------------------VEPYLDITSIYNHLHHKQL 153 (522)
Q Consensus 99 lL~--d~~I~KVgh~~k-~Dl~~L~~~~gi~g~~~~~~~----------------------~~~~~Dlt~La~yLl~~~~ 153 (522)
++. ||+|+ +|||.. +|+..|......+|+...+.. -..++|+-.+.....
T Consensus 214 ~i~~~dPDii-~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~---- 288 (786)
T 3k59_A 214 WFANYDPDVI-IGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAF---- 288 (786)
T ss_dssp HHHHHCCSEE-EESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTT----
T ss_pred HHHHcCCCEE-EecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhcc----
Confidence 443 67754 899987 598877432111121110100 022678433332110
Q ss_pred CCCCCcCCccHHHHHHHHcCCcCcc------cccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009909 154 GRKLPKETKSLANICKELLDISLSK------ELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (522)
Q Consensus 154 ~~~~~~~~~sL~~L~~~~Lg~~l~K------~~q~sd-W~~RPL~~~Qi~YAA~DA~~ll~L~~~L 212 (522)
.+..+++|.++++.+||..-.. ..++.. |...+ ..-+.|...||..+++|+..+
T Consensus 289 ---~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~--~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 289 ---WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDK--PALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp ---CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 1135899999999999964210 112222 22111 355889999999999998875
No 48
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=61.37 E-value=3.1 Score=32.28 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=24.9
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.-.+..=+.+ ..||+++ ++..-+=|.||.||-
T Consensus 8 y~C~vCGyiYd~~~Gdp~---------~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDKF---------AGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp EEETTTCCEECTTTCCTT---------TTCCSSCCGGGSCTTCBCTTTCC
T ss_pred EEeCCCCEEEcCCCCCcc---------cCcCCCCchhhCCCCCcCCCCCC
Confidence 579999975421111111 2466665 455667899999996
No 49
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=60.92 E-value=4 Score=27.30 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=11.8
Q ss_pred CCceeecCCCCeEE
Q 009909 488 NLQFWQCMDCNQLY 501 (522)
Q Consensus 488 ~~~F~~C~~CgkvY 501 (522)
..+||+|+.||.|.
T Consensus 3 ~~~fY~C~~CGniv 16 (36)
T 1dxg_A 3 EGDVYKCELCGQVV 16 (36)
T ss_dssp TTCEEECTTTCCEE
T ss_pred cccEEEcCCCCcEE
Confidence 36899999999875
No 50
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=60.87 E-value=1.3e+02 Score=29.46 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=55.7
Q ss_pred hhCCCCceEEEEechhhHHHHHhhcccCCCcc---Ccc-----CCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHH
Q 009909 99 LFVSPDILKLGFKFKQDLIYLSSTFCSQGCDI---GFD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (522)
Q Consensus 99 lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~---~~~-----~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~ 170 (522)
++-++++..|.|..-.|+-.|.+.+--..+.. .|. ....++|+-.++.... ...-||+++++.
T Consensus 145 lvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~---------~l~ggL~~lA~~ 215 (285)
T 4gmj_B 145 VVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCK---------NLKGGLQEVAEQ 215 (285)
T ss_dssp SSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGST---------TCCSCHHHHHHH
T ss_pred HHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhcc---------ccCChHHHHHHh
Confidence 34468899998888899877654321001100 000 0134778433332221 123589999876
Q ss_pred HcCCc-CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009909 171 LLDIS-LSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQK 219 (522)
Q Consensus 171 ~Lg~~-l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~ 219 (522)
||++ +.+. +-|..|++.+..++-.|++..-+.
T Consensus 216 -L~v~r~g~~----------------HqAGsDSllT~~~F~kl~~~~f~~ 248 (285)
T 4gmj_B 216 -LELERIGPQ----------------HQAGSDSLLTGMAFFKMREMFFED 248 (285)
T ss_dssp -TTCCCCSCT----------------TSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCCCCCCCC----------------CcchhHHHHHHHHHHHHHHHHhcC
Confidence 4643 2111 228999999999999998877643
No 51
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=60.68 E-value=8.3 Score=44.07 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=23.8
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~ 400 (522)
++||+|+.||+|.++.+.+.-...+...|.++|
T Consensus 62 l~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g 94 (878)
T 2v0c_A 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFG 94 (878)
T ss_dssp HHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTT
T ss_pred HHHHHHhcCCceEeecccCcccHHHHHHHHHcC
Confidence 899999999999998764322334555666655
No 52
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=60.27 E-value=13 Score=31.86 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCcCcccCcCCCcccCCCCcccc
Q 009909 430 NQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQ 462 (522)
Q Consensus 430 ~~QL~~v~~~f~l~~~~~~~~sRC~~CN~~l~~ 462 (522)
..++..|.....+.+.++.--+-|-.|+..|++
T Consensus 45 ~~~~~~is~k~~irlp~~~KR~~Ck~C~s~LiP 77 (120)
T 1x0t_A 45 VELALEIQKKAKVKIPRKWKRRYCKRCHTFLIP 77 (120)
T ss_dssp HHHHHHHHHHHTCCCCTTTTTSBCTTTCCBCCB
T ss_pred HHHHHHHHHHhccCCCHHHHHHhccCCCCEeEC
Confidence 357788888888888887667889999999974
No 53
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=60.21 E-value=20 Score=32.67 Aligned_cols=32 Identities=13% Similarity=-0.098 Sum_probs=22.8
Q ss_pred hHHHHHHhhCCCC----ceEEEEechhhHHHHHhhc
Q 009909 92 IWELLKELFVSPD----ILKLGFKFKQDLIYLSSTF 123 (522)
Q Consensus 92 ~~~~L~~lL~d~~----I~KVgh~~k~Dl~~L~~~~ 123 (522)
+...|..++.+.- ...||||+.+|+..|.+.+
T Consensus 88 v~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~ 123 (194)
T 2gbz_A 88 AEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQM 123 (194)
T ss_dssp HHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHH
Confidence 4555666676532 3469999999999998754
No 54
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=59.98 E-value=2.9 Score=30.92 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=24.3
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.-....-+. ...||+++ ++..-+=|.||.||-
T Consensus 4 y~C~~CGyvYd~~~Gdp---------~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLP---------EEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp EEETTTCCEEETTTCBT---------TTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred EEeCCCCeEECCCcCCc---------ccCcCCCCChhHCCCCCcCCCCCC
Confidence 37999997542111010 12456665 455667899999996
No 55
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=59.09 E-value=2.9 Score=33.87 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=25.2
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccc-cccCCceeecCCCCe
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
.-+|..|+-.-....-+.+ ..||+++ |+..-+-|.||.||-
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~---------~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEA---------EGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp EEEETTTTEEEETTSCCTT---------TTCCSCCCGGGCCTTCCCSSSCC
T ss_pred eEECCCCCeEecCCcCCcc---------cCcCCCCChhHCCCCCCCCCCCC
Confidence 3589999975421111111 2456665 566667899999995
No 56
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=58.80 E-value=14 Score=31.66 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCcCcccCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009909 430 NQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 430 ~~QL~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvY 501 (522)
..++..|.....+.+.++.--+-|-.|++.|++ -++.. + +|-.. ....-.+.|-.||.+.
T Consensus 40 ~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~LIP-G~t~~-------v--ri~~~--~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 40 VELALLVQQKAKVKIPRKWKRRYCKKCHAFLVP-GINAR-------V--RLRQK--RMPHIVVKCLECGHIM 99 (123)
T ss_dssp HHHHHHHHHHHTCCCSSTTTTSBCTTTCCBCCB-TTTEE-------E--EEECS--SSCEEEEEETTTTEEE
T ss_pred HHHHHHHHHHhccCCCHHHHHHhccCCCCEeEC-CCceE-------E--EEecC--CccEEEEECCCCCCEE
Confidence 457788888888888887667889999999974 11100 0 11110 0013578899999764
No 57
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=56.89 E-value=16 Score=34.21 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=55.2
Q ss_pred hhHHHHHHhhCCCCceEEEEec--------hhhHHH-HHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCC
Q 009909 91 SIWELLKELFVSPDILKLGFKF--------KQDLIY-LSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET 161 (522)
Q Consensus 91 ~~~~~L~~lL~d~~I~KVgh~~--------k~Dl~~-L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~ 161 (522)
+++..|..++.+..+ ||||. ..|+.. |.+.+...|+.. ......++|+...+...... ...
T Consensus 106 ~v~~~f~~~l~~~~l--v~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~-p~~~~~~iD~~~~~~~~~~~-------~p~ 175 (224)
T 2xri_A 106 QVLERVDEWMAKEGL--LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPV-ADYFKQWINLKKAYSFAMGC-------WPK 175 (224)
T ss_dssp HHHHHHHHHHHHTTT--TSTTSCEEEEESSSHHHHTHHHHHHHHHTCCC-CGGGSCEEEHHHHHHHHHTS-------CCT
T ss_pred HHHHHHHHHHhhccc--ccCCCceEEEEeChhhHHHHHHHHHHHhCCCC-cccccceEeHHHHHHHHhcc-------CCC
Confidence 345566667765432 67887 999985 643322223210 00113678954333322211 124
Q ss_pred ccHHHHHHHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009909 162 KSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQ 213 (522)
Q Consensus 162 ~sL~~L~~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~ 213 (522)
++|..|++ .+|++... + .+-|..||.++.+|+..|.
T Consensus 176 ~~L~~l~~-~~gi~~~~--~-------------~H~Al~DA~~ta~l~~~l~ 211 (224)
T 2xri_A 176 NGLLDMNK-GLSLQHIG--R-------------PHSGIDDCKNIANIMKTLA 211 (224)
T ss_dssp TTHHHHHH-HTTCCCCS--C-------------TTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HcCCCCCC--C-------------CcChHHHHHHHHHHHHHHH
Confidence 79999987 55765421 1 1238899999999988876
No 58
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=55.38 E-value=5.3 Score=42.21 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~R 401 (522)
|+||||..||+|.++.+.+.-+..|+..|+++|.
T Consensus 53 l~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~ 86 (462)
T 3tqo_A 53 VVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKE 86 (462)
T ss_dssp HHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTS
T ss_pred HHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCC
Confidence 7999999999999987643334678999988874
No 59
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=54.53 E-value=5.6 Score=45.48 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=22.5
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~ 400 (522)
||||+|+.||+|.++.+.+.-...+...|.++|
T Consensus 82 laRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g 114 (880)
T 4arc_A 82 IARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNN 114 (880)
T ss_dssp HHHHHHHTTCEEECCCEECCCSTHHHHHHHHTT
T ss_pred HHHHHHHcCCceEEecCccccCcHHHHHHHHcC
Confidence 799999999999988753322223445555555
No 60
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=52.27 E-value=5.7 Score=33.79 Aligned_cols=15 Identities=27% Similarity=0.703 Sum_probs=13.1
Q ss_pred ceeecCCCCeEEecc
Q 009909 490 QFWQCMDCNQLYWEV 504 (522)
Q Consensus 490 ~F~~C~~CgkvYW~G 504 (522)
.-|.|+.||++|=.|
T Consensus 77 GIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 77 GIWQCSYCDYKFTGG 91 (116)
T ss_dssp TEEEETTTCCEEECC
T ss_pred eeEECCCCCCEEECC
Confidence 589999999998666
No 61
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=51.84 E-value=9.7 Score=28.23 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.7
Q ss_pred CceeecCCCCeEE
Q 009909 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~CgkvY 501 (522)
..-+.|..||-||
T Consensus 28 ~ge~vC~~CGlVl 40 (58)
T 1dl6_A 28 AGDMICPECGLVV 40 (58)
T ss_dssp SCCEECTTTCCEE
T ss_pred CCeEEeCCCCCEE
Confidence 3458899999987
No 62
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=50.09 E-value=14 Score=32.53 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=32.5
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhcccCCcEEEEcC
Q 009909 388 EPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKS 426 (522)
Q Consensus 388 ~d~~ll~~A~~e~RiiLTrd~~l~~~~~~~~~~~~~v~~ 426 (522)
-|..+++.|++.+.+++|.|..+.+.+...+..++.++.
T Consensus 94 vD~~l~~lA~~~~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 94 IDAMIRKVAKETNSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp HHHHHHHHHHHTTCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHHHhCCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 367899999999999999999998877666667777765
No 63
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=49.43 E-value=6.9 Score=22.72 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=14.3
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTL 20 (29)
T ss_dssp EECSSSSCEESCSHHHHH
T ss_pred ccCCCCCchhCCHHHHHH
Confidence 579999999987766554
No 64
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=49.32 E-value=5.8 Score=22.88 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=14.2
Q ss_pred eeecCCCCeEEecccchhh
Q 009909 491 FWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 491 F~~C~~CgkvYW~GsH~~r 509 (522)
-+.|+.||+.|-.-++..+
T Consensus 3 ~~~C~~C~k~f~~~~~l~~ 21 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTK 21 (27)
T ss_dssp CEECSSSSCEESSHHHHHH
T ss_pred CccCCCcChhhCCHHHHHH
Confidence 3689999999976655443
No 65
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=54.81 E-value=3.6 Score=23.64 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=14.1
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLAN 20 (26)
Confidence 579999999987766543
No 66
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=48.53 E-value=7 Score=35.68 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=20.5
Q ss_pred CCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeE
Q 009909 449 LMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 500 (522)
Q Consensus 449 ~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 500 (522)
...-|+.||..+.. ....-|+|++||+.
T Consensus 41 ~Y~ACp~CnKKV~~------------------------~~~g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKSVLK------------------------YHGDSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCCEEE------------------------ETTTEEEETTTTEE
T ss_pred EehhchhhCCEeee------------------------CCCCeEECCCCCCC
Confidence 35679999996531 12458999999998
No 67
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=47.39 E-value=12 Score=32.65 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=30.6
Q ss_pred CCChHHHHHhhhcCCcEEEecChhHHHhhcccCCcEEEEcCC
Q 009909 386 KPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSL 427 (522)
Q Consensus 386 ~~~d~~ll~~A~~e~RiiLTrd~~l~~~~~~~~~~~~~v~~~ 427 (522)
+. |.-+++.|.+.+-+|+|.|+.|.++....+..++.+..+
T Consensus 98 ~~-D~~Ila~A~~~~~~LvT~D~~l~~~a~~~Gv~vi~~~~~ 138 (147)
T 1o4w_A 98 EG-DPSLIEAAEKYGCILITNDKELKRKAKQRGIPVGYLKED 138 (147)
T ss_dssp CS-HHHHHHHHHHHTCEEECCCHHHHHHHHHTTCCEECCCCC
T ss_pred Cc-hHHHHHHHHHhCCEEEECCHHHHHHHHHCCCeEEEecCC
Confidence 35 788999999999999999999877654445555555443
No 68
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=47.36 E-value=7.8 Score=40.85 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~R 401 (522)
|+|+||..||+|.++.+.+.-|..++..|+++|.
T Consensus 50 l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~ 83 (461)
T 1li5_A 50 VARYLRFLGYKLKYVRNITDIDDKIIKRANENGE 83 (461)
T ss_dssp HHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCC
Confidence 8999999999999885432234678888988874
No 69
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=46.58 E-value=8.2 Score=28.98 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=9.0
Q ss_pred CCCcccCCCCc
Q 009909 449 LMSRCTKCNGR 459 (522)
Q Consensus 449 ~~sRC~~CN~~ 459 (522)
.++.|+.|+..
T Consensus 29 ~l~~c~~cGe~ 39 (60)
T 3v2d_5 29 TLVPCPECKAM 39 (60)
T ss_dssp CCEECTTTCCE
T ss_pred ceeECCCCCCe
Confidence 47899999884
No 70
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=46.27 E-value=9.4 Score=29.65 Aligned_cols=13 Identities=15% Similarity=0.578 Sum_probs=9.9
Q ss_pred CCceeecCCCCeEE
Q 009909 488 NLQFWQCMDCNQLY 501 (522)
Q Consensus 488 ~~~F~~C~~CgkvY 501 (522)
..+-.+|| ||+..
T Consensus 18 ~~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 18 GAKTRKCV-CGRTV 30 (71)
T ss_dssp TCSEEEET-TTEEE
T ss_pred CCcEEECC-CCCee
Confidence 34577899 99875
No 71
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=46.20 E-value=10 Score=31.31 Aligned_cols=47 Identities=21% Similarity=0.501 Sum_probs=26.9
Q ss_pred HHHHHHhc-CcCcccCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCe
Q 009909 433 LLEVIEAF-QLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQ 499 (522)
Q Consensus 433 L~~v~~~f-~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgk 499 (522)
+.+|+..+ .++.........|+.||..- |....+....+|.|-+||+
T Consensus 19 i~~v~~~~~~lk~~G~~~~~~CPfh~e~~--------------------pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 19 IVDVIGEYVQLKRQGRNYFGLCPFHGEKT--------------------PSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp HHHHHTTTSCCEEETTEEEECCSSSCCSS--------------------CCEEEETTTTEEEETTTCC
T ss_pred HHHHHHHhCCeeecCCeEEEECCCCCCCC--------------------CcEEEEcCCCEEEECCCCC
Confidence 34566555 22222233356799998631 2222233467999999995
No 72
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=45.81 E-value=6.7 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=13.5
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 4 ~~C~~C~k~f~~~~~l~~ 21 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQA 21 (27)
T ss_dssp EEETTTTEEESCHHHHHH
T ss_pred cCCCCCCcccCCHHHHHH
Confidence 679999999976555443
No 73
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=45.73 E-value=8.6 Score=22.14 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=13.5
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKR 20 (29)
T ss_dssp EECTTTSCEESCHHHHHH
T ss_pred ccCCCCCCccCChhHHHH
Confidence 579999999976555443
No 74
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=45.25 E-value=6.5 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=14.4
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-..++..+
T Consensus 3 ~~C~~C~~~f~~~~~l~~ 20 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKA 20 (29)
T ss_dssp CCCSSCCCCCCTTTHHHH
T ss_pred CcCCCCCcccCCHHHHHH
Confidence 579999999987776654
No 75
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=45.18 E-value=7.3 Score=22.53 Aligned_cols=18 Identities=11% Similarity=0.264 Sum_probs=13.7
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 4 ~~C~~C~k~f~~~~~l~~ 21 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMET 21 (28)
T ss_dssp EECSSSCCEESCHHHHHH
T ss_pred ccCCCCCcccCCHHHHHH
Confidence 679999999976655443
No 76
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=44.16 E-value=8.1 Score=27.41 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.5
Q ss_pred ceeecCCCCeEEec
Q 009909 490 QFWQCMDCNQLYWE 503 (522)
Q Consensus 490 ~F~~C~~CgkvYW~ 503 (522)
.-|+|+.||-||=+
T Consensus 3 ~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 3 QKYVCNVCGYEYDP 16 (46)
T ss_dssp CCEEETTTCCEECG
T ss_pred CEEECCCCCeEEeC
Confidence 46899999999953
No 77
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=43.79 E-value=16 Score=31.87 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=30.2
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhcccCCcEEEE
Q 009909 388 EPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRV 424 (522)
Q Consensus 388 ~d~~ll~~A~~e~RiiLTrd~~l~~~~~~~~~~~~~v 424 (522)
-|..|++.|++-+.+++|.|..+.+.+...+..++.+
T Consensus 86 vD~~ll~lA~~~~~~lvTnD~~L~kvA~~~GI~Vl~l 122 (134)
T 3ix7_A 86 VDEKLLFLARDLEAALVTNDHALLQMARIYGVKALSI 122 (134)
T ss_dssp HHHHHHHHHHHTTCEEEESCHHHHHHHHHTTCCEEEH
T ss_pred HHHHHHHHHHHhCCEEEeCCHHHHHHHHHCCCeEEeh
Confidence 3778999999999999999999988776556556555
No 78
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=43.54 E-value=5.2 Score=23.25 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=14.1
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~~~f~~~~~l~~ 20 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKR 20 (29)
T ss_dssp CBCTTTCCBCSSHHHHHH
T ss_pred eECCCCCcccCCHHHHHH
Confidence 579999999977666554
No 79
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.42 E-value=7.8 Score=24.13 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=15.5
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHSLQA 27 (36)
T ss_dssp CCEECTTTCCEESSHHHHHH
T ss_pred CCEECCCCCceeCCHHHHHH
Confidence 45789999999987666554
No 80
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=43.22 E-value=7.4 Score=40.34 Aligned_cols=33 Identities=6% Similarity=0.077 Sum_probs=26.2
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~ 400 (522)
|+|+||..||+|.++...+.-+..++..|+++|
T Consensus 67 laR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g 99 (414)
T 3c8z_A 67 VHRLWLDAGHTVQYVQNVTDVDDPLFERAERDG 99 (414)
T ss_dssp HHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcC
Confidence 899999999999987654333456888888876
No 81
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=43.03 E-value=9 Score=28.74 Aligned_cols=12 Identities=25% Similarity=1.016 Sum_probs=9.2
Q ss_pred cCCCcccCCCCc
Q 009909 448 QLMSRCTKCNGR 459 (522)
Q Consensus 448 ~~~sRC~~CN~~ 459 (522)
..++.|+.|+..
T Consensus 28 p~l~~c~~cG~~ 39 (60)
T 2zjr_Z 28 PNLTECPQCHGK 39 (60)
T ss_dssp CCCEECTTTCCE
T ss_pred CCceECCCCCCE
Confidence 347889999885
No 82
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=41.68 E-value=8.8 Score=22.24 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=14.1
Q ss_pred eeecCCCCeEEecccchhh
Q 009909 491 FWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 491 F~~C~~CgkvYW~GsH~~r 509 (522)
-+.|+.||+.|-.-++..+
T Consensus 3 ~~~C~~C~~~f~~~~~l~~ 21 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMR 21 (30)
T ss_dssp CEECTTTCCEESCHHHHHH
T ss_pred CccCCCCCcccCCHHHHHH
Confidence 4689999999976555443
No 83
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=41.38 E-value=5.9 Score=22.64 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=13.3
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 2 ~~C~~C~k~f~~~~~l~~ 19 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSR 19 (27)
T ss_dssp CBCSSSCCBCSSHHHHHH
T ss_pred ccCCCCCCcCCCHHHHHH
Confidence 579999999976555443
No 84
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=41.11 E-value=12 Score=32.49 Aligned_cols=28 Identities=18% Similarity=0.765 Sum_probs=20.3
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvY 501 (522)
+.-|+.||+.. +|+. ...|.||.|+.-+
T Consensus 27 lP~CP~C~sey-----------------------tYeD-g~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEY-----------------------TYED-GALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCC-----------------------CEEC-SSSEEETTTTEEE
T ss_pred CCCCCCCCCcc-----------------------eEec-CCeEECCcccccc
Confidence 46799999964 2332 4579999999763
No 85
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=41.04 E-value=13 Score=27.43 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=9.7
Q ss_pred CCcccCCCCccc
Q 009909 450 MSRCTKCNGRFI 461 (522)
Q Consensus 450 ~sRC~~CN~~l~ 461 (522)
.-+|+.|.++|.
T Consensus 10 iL~CP~c~~~L~ 21 (56)
T 2kpi_A 10 ILACPACHAPLE 21 (56)
T ss_dssp SCCCSSSCSCEE
T ss_pred heeCCCCCCcce
Confidence 348999999874
No 86
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=40.87 E-value=6.8 Score=22.77 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=14.3
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKT 20 (30)
T ss_dssp CCCSSSSCCCSCSHHHHH
T ss_pred ccCCCCCCccCCHHHHHH
Confidence 579999999987766554
No 87
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=40.09 E-value=13 Score=29.13 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=12.5
Q ss_pred ceeecCCCCeEEecc
Q 009909 490 QFWQCMDCNQLYWEV 504 (522)
Q Consensus 490 ~F~~C~~CgkvYW~G 504 (522)
-.|.|.+|++.|=.|
T Consensus 44 GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 44 SIWVCGHCGYKIAGG 58 (73)
T ss_pred EEEECCCCCcEEECC
Confidence 479999999998555
No 88
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.53 E-value=9.8 Score=23.25 Aligned_cols=20 Identities=10% Similarity=0.188 Sum_probs=15.4
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 6 k~~~C~~C~k~f~~~~~L~~ 25 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLRS 25 (35)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCcchhCCHHHHHH
Confidence 45789999999987666554
No 89
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=39.05 E-value=12 Score=34.03 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=12.7
Q ss_pred CceeecCCCCeEEe
Q 009909 489 LQFWQCMDCNQLYW 502 (522)
Q Consensus 489 ~~F~~C~~CgkvYW 502 (522)
..+|+|+.||-||-
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 46999999999997
No 90
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.73 E-value=14 Score=29.50 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=13.8
Q ss_pred CceeecCCCCeEEeccc
Q 009909 489 LQFWQCMDCNQLYWEVM 505 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~Gs 505 (522)
.--|.|..||+.|=.|.
T Consensus 51 ~GIW~C~kCg~~~AGGA 67 (83)
T 3j21_i 51 TGIWQCQKCGATFAGGA 67 (83)
T ss_dssp TTEEEETTTCCEEECCS
T ss_pred cCeEEcCCCCCEEeCCc
Confidence 45899999999986654
No 91
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=38.23 E-value=16 Score=29.81 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=14.5
Q ss_pred CceeecCCCCeEEecccc
Q 009909 489 LQFWQCMDCNQLYWEVMS 506 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH 506 (522)
.-.|.|..||+.|=.|.-
T Consensus 52 ~GIW~C~~Cg~~~AGGAy 69 (92)
T 3iz5_m 52 VGIWGCKDCGKVKAGGAY 69 (92)
T ss_dssp TTEEECSSSCCEEECCSS
T ss_pred cceEEcCCCCCEEeCCcc
Confidence 458999999999876643
No 92
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=37.67 E-value=5.6 Score=36.40 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=11.7
Q ss_pred cCCCcccCCCCccc
Q 009909 448 QLMSRCTKCNGRFI 461 (522)
Q Consensus 448 ~~~sRC~~CN~~l~ 461 (522)
.++++|+.|..+++
T Consensus 138 vv~a~~~~~g~~m~ 151 (179)
T 3m7n_A 138 VLRALCSNCKTEMV 151 (179)
T ss_dssp EEECBCTTTCCBCE
T ss_pred EEEecccccCCceE
Confidence 45899999999874
No 93
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=37.15 E-value=15 Score=28.57 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=13.4
Q ss_pred CceeecCCCCeEEeccc
Q 009909 489 LQFWQCMDCNQLYWEVM 505 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~Gs 505 (522)
.-.|.|.+||+.|=.|.
T Consensus 42 ~GIW~C~~C~~~~AGGA 58 (72)
T 3jyw_9 42 AGIWTCSCCKKTVAGGA 58 (72)
T ss_dssp SSCBCCSSSCCCCCCSS
T ss_pred CCeEECCCCCCEEeCCc
Confidence 45899999999875553
No 94
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=36.94 E-value=16 Score=33.26 Aligned_cols=13 Identities=15% Similarity=0.759 Sum_probs=11.0
Q ss_pred CceeecCCCCeEE
Q 009909 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~CgkvY 501 (522)
..-|+|+.|++.|
T Consensus 60 ~g~~~CekC~~~~ 72 (181)
T 1l1o_C 60 NGLYRCEKCDTEF 72 (181)
T ss_dssp TTEEEETTTTEEE
T ss_pred CCeEECCCCCCcC
Confidence 3579999999986
No 95
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=36.77 E-value=17 Score=29.60 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=14.5
Q ss_pred CceeecCCCCeEEecccc
Q 009909 489 LQFWQCMDCNQLYWEVMS 506 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH 506 (522)
.-.|.|..||+.|=.|.-
T Consensus 52 ~GIW~C~~C~~~~AGGAy 69 (92)
T 3izc_m 52 AGIWTCSCCKKTVAGGAY 69 (92)
T ss_dssp TTEEECTTTCCEEECCSS
T ss_pred cceEEcCCCCCEEeCCcc
Confidence 458999999999866643
No 96
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.71 E-value=12 Score=23.12 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=15.3
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elt_A 8 KPYKCPQCSYASAIKANLNV 27 (36)
T ss_dssp CSEECSSSSCEESSHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHH
Confidence 45789999999977665544
No 97
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=36.13 E-value=15 Score=30.56 Aligned_cols=18 Identities=17% Similarity=0.576 Sum_probs=14.7
Q ss_pred CceeecCCCCeEEecccc
Q 009909 489 LQFWQCMDCNQLYWEVMS 506 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH 506 (522)
.-.|.|..||+.|=.|.-
T Consensus 52 ~GIW~C~kCg~~~AGGAy 69 (103)
T 4a17_Y 52 VGIWKCKPCKKIIAGGAW 69 (103)
T ss_dssp TTEEEETTTTEEEECCSS
T ss_pred cceEEcCCCCCEEeCCcc
Confidence 458999999999876653
No 98
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=35.72 E-value=9.4 Score=30.35 Aligned_cols=13 Identities=15% Similarity=0.784 Sum_probs=10.4
Q ss_pred eeecCCCCeEEec
Q 009909 491 FWQCMDCNQLYWE 503 (522)
Q Consensus 491 F~~C~~CgkvYW~ 503 (522)
.+.||.||--|..
T Consensus 51 ~FkCP~CgEEFyG 63 (95)
T 2k5c_A 51 VFKCPVCGEEFYG 63 (95)
T ss_dssp EEECTTTCCEEET
T ss_pred hhcCCCccHHHhc
Confidence 3679999998864
No 99
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=35.64 E-value=8.7 Score=41.01 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=15.8
Q ss_pred HHHHHHhcCCceecCCCC-CC---------ChHHHHHhhhcCCc
Q 009909 368 LAKHLRCVGIDAATPRSK-KP---------EPRELIDQTSKEKR 401 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~-~~---------~d~~ll~~A~~e~R 401 (522)
|+||||..||+|.++.+. ++ -+..|+..|+++|.
T Consensus 70 l~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~ 113 (501)
T 3sp1_A 70 LIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGL 113 (501)
T ss_dssp HHHHHHHHTCCEEEEEEEBCSCCC-------------------C
T ss_pred HHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCC
Confidence 799999999999987421 11 14568888888774
No 100
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=35.42 E-value=20 Score=31.49 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=33.2
Q ss_pred cHHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecChhHHHhhc
Q 009909 365 VEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQY 415 (522)
Q Consensus 365 Lg~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~RiiLTrd~~l~~~~~ 415 (522)
-+.|...||..|.-. +..|.-|+..|...|-.|+|+|++|.+-..
T Consensus 97 a~~l~~~l~~~G~~~------~~~D~lIaA~A~~~~~~LvT~d~dF~~i~~ 141 (150)
T 3dbo_B 97 WARLRIHLAESGRRV------RINDLWIAAVAASRALPVITQDDDFAALDG 141 (150)
T ss_dssp HHHHHHHHHHHTCCC------BHHHHHHHHHHHHTTCCEEESSSSGGGGTT
T ss_pred HHHHHHHHHHcCCCC------CCchHHHHHHHHHCCCEEEECChhhhhCCC
Confidence 456777788888631 234677899999999999999988855433
No 101
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=40.96 E-value=8.2 Score=22.49 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=13.3
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLIA 20 (29)
Confidence 579999999976555443
No 102
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=34.60 E-value=23 Score=32.91 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCcCcccCcCCCcccCCCCc
Q 009909 430 NQQLLEVIEAFQLKISEDQLMSRCTKCNGR 459 (522)
Q Consensus 430 ~~QL~~v~~~f~l~~~~~~~~sRC~~CN~~ 459 (522)
.+.+..+++.+... .+...-+|..|+-.
T Consensus 153 ~~~~~~ll~~l~~~--~~~~~~~C~~CG~i 180 (202)
T 1yuz_A 153 AERYLAAYNDIDAP--DDDKFHLCPICGYI 180 (202)
T ss_dssp HHHHHHHHHTTTCC--CSCCEEECSSSCCE
T ss_pred HHHHHHHHHHHhcC--CCCcEEEECCCCCE
Confidence 45667777766543 23346799999975
No 103
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=34.42 E-value=13 Score=22.73 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=15.1
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 6 k~~~C~~C~k~f~~~~~l~~ 25 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCAR 25 (35)
T ss_dssp SCEECSSSCCEESSHHHHHH
T ss_pred cCeeCCCCCcccCCHHHHHH
Confidence 45789999999977665544
No 104
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=34.29 E-value=39 Score=23.43 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=26.7
Q ss_pred cccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecccchhh
Q 009909 452 RCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 452 RC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~GsH~~r 509 (522)
.|..|+..+. .......... + -....-+.|+.||+.|-.-+...+
T Consensus 4 ~C~~C~~~f~----~~~~l~~H~~----~-----h~~~~~~~C~~C~~~f~~~~~l~~ 48 (60)
T 2adr_A 4 VCEVCTRAFA----RQEHLKRHYR----S-----HTNEKPYPCGLCNRAFTRRDLLIR 48 (60)
T ss_dssp CCTTTCCCBS----CHHHHHHHHH----T-----TTSSCSEECTTTCCEESSHHHHHH
T ss_pred cCCCCccccC----CHHHHHHHHH----H-----hCCCCCccCCCCCCccCCHHHHHH
Confidence 5999998773 2233222111 1 112345889999999976655444
No 105
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=34.26 E-value=15 Score=29.23 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=11.1
Q ss_pred CceeecCCCCeEE
Q 009909 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~CgkvY 501 (522)
..-.+|+.||++|
T Consensus 54 g~~~RC~eCG~~f 66 (80)
T 2odx_A 54 NEVARCWECGSVY 66 (80)
T ss_dssp TCEEECSSSCCEE
T ss_pred CCCeECCCCCeEE
Confidence 3678999999988
No 106
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=34.19 E-value=11 Score=23.53 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=14.6
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|=.-++..+
T Consensus 10 k~~~C~~C~k~f~~~~~l~~ 29 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHLAL 29 (37)
T ss_dssp SSBCCTTTCCCBSSHHHHHH
T ss_pred CCccCCCCCcccCcHHHHHH
Confidence 45789999999976555444
No 107
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=40.41 E-value=8.5 Score=22.44 Aligned_cols=18 Identities=11% Similarity=0.445 Sum_probs=13.7
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 4 ~~C~~C~k~f~~~~~l~~ 21 (30)
T 2lvr_A 4 YVCIHCQRQFADPGALQR 21 (30)
Confidence 579999999976665544
No 108
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=33.69 E-value=14 Score=35.49 Aligned_cols=26 Identities=23% Similarity=0.682 Sum_probs=13.5
Q ss_pred cccCccccccCCceeecCCCCeEEecc
Q 009909 478 QRIPDCLFDKNLQFWQCMDCNQLYWEV 504 (522)
Q Consensus 478 ~~vp~~v~~~~~~F~~C~~CgkvYW~G 504 (522)
+.|++.-|+. ..||.|..|++.|+.-
T Consensus 18 ~~~~~~~~~~-~d~~~Ce~C~~~~~~~ 43 (237)
T 3ray_A 18 DLIVPKSFQQ-VDFWFCESCQEYFVDE 43 (237)
T ss_dssp ------------CCEEETTTTEEESSS
T ss_pred cccCCCCCCC-CCEEEchHhCcccccc
Confidence 3567777764 6799999999999864
No 109
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=32.70 E-value=20 Score=24.85 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.3
Q ss_pred cCCceeecCCCCeE
Q 009909 487 KNLQFWQCMDCNQL 500 (522)
Q Consensus 487 ~~~~F~~C~~Cgkv 500 (522)
....|..|.+|||-
T Consensus 13 ~~~~YRvC~~CgkP 26 (44)
T 2lo3_A 13 KPIQYRVCEKCGKP 26 (44)
T ss_dssp CCCCEEECTTTCCE
T ss_pred ccccchhhcccCCc
Confidence 34579999999984
No 110
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.64 E-value=15 Score=26.71 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=8.4
Q ss_pred ceeecCCCCeE
Q 009909 490 QFWQCMDCNQL 500 (522)
Q Consensus 490 ~F~~C~~Cgkv 500 (522)
.-|.|..||-.
T Consensus 27 gaw~CrKCG~~ 37 (51)
T 3j21_g 27 GAKKCRKCGYK 37 (51)
T ss_dssp TCSSCSSSSSC
T ss_pred CceecCCCCCc
Confidence 36889999854
No 111
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=32.58 E-value=43 Score=27.52 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=10.6
Q ss_pred CceeecCCCCeEE
Q 009909 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~CgkvY 501 (522)
..--.|+.||..|
T Consensus 51 ~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEALITRDRKQVF 63 (97)
T ss_dssp SEEEECTTSCEEE
T ss_pred CCeEEcCCCCCCc
Confidence 3456799999998
No 112
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=32.15 E-value=16 Score=30.13 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.8
Q ss_pred CceeecCCCCeEE
Q 009909 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~CgkvY 501 (522)
.+-.+|+.||++|
T Consensus 77 g~~~RC~eCG~~f 89 (98)
T 1v54_F 77 GEAQRCPSCGTHY 89 (98)
T ss_dssp SSCEECTTTCCEE
T ss_pred CCceECCCCCeEE
Confidence 3478999999987
No 113
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=32.14 E-value=16 Score=29.51 Aligned_cols=15 Identities=33% Similarity=0.966 Sum_probs=12.8
Q ss_pred CceeecCCCCeEEec
Q 009909 489 LQFWQCMDCNQLYWE 503 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~ 503 (522)
..-|+|+.||-||=+
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 568999999999954
No 114
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=32.04 E-value=22 Score=30.98 Aligned_cols=35 Identities=17% Similarity=0.561 Sum_probs=22.2
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEec
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWE 503 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~ 503 (522)
+--|+.||..|.++. . . ......|.|+.||-.+-.
T Consensus 24 ~~FCPeCgNmL~pke----d---------~------~~~~l~~~CrtCgY~~~~ 58 (133)
T 3qt1_I 24 FRFCRDCNNMLYPRE----D---------K------ENNRLLFECRTCSYVEEA 58 (133)
T ss_dssp CCBCTTTCCBCBCCB----C---------T------TTCCBCCBCSSSCCBCCC
T ss_pred CeeCCCCCCEeeECc----c---------C------CCceeEEECCCCCCcEEc
Confidence 345999999986321 0 0 012357899999976643
No 115
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.04 E-value=13 Score=23.04 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=15.9
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-..++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~ 27 (37)
T 2elo_A 7 GRSYSCPVCEKSFSEDRLIKS 27 (37)
T ss_dssp CCCCEETTTTEECSSHHHHHH
T ss_pred CCCcCCCCCCCccCCHHHHHH
Confidence 345789999999987666554
No 116
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.84 E-value=22 Score=22.00 Aligned_cols=21 Identities=10% Similarity=0.157 Sum_probs=15.7
Q ss_pred CceeecCCCCeEEecc-cchhh
Q 009909 489 LQFWQCMDCNQLYWEV-MSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~G-sH~~r 509 (522)
+.-+.|+.||+.|-.- ++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~~L~~ 28 (37)
T 2elp_A 7 GRAMKCPYCDFYFMKNGSDLQR 28 (37)
T ss_dssp CCCEECSSSSCEECSSCHHHHH
T ss_pred CCCeECCCCChhhccCHHHHHH
Confidence 3457899999999775 66554
No 117
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.59 E-value=16 Score=22.60 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=15.0
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elv_A 8 LLYDCHICERKFKNELDRDR 27 (36)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 45789999999976655544
No 118
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.46 E-value=16 Score=29.08 Aligned_cols=14 Identities=21% Similarity=0.776 Sum_probs=12.2
Q ss_pred CceeecCCCCeEEe
Q 009909 489 LQFWQCMDCNQLYW 502 (522)
Q Consensus 489 ~~F~~C~~CgkvYW 502 (522)
..-|+|+.||-||=
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 46899999999995
No 119
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.18 E-value=36 Score=24.92 Aligned_cols=46 Identities=11% Similarity=0.322 Sum_probs=27.6
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecccchhh
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~GsH~~r 509 (522)
-.|..|+..+. .+........ + -....-+.|+.||+.|-.-++..+
T Consensus 18 ~~C~~C~k~f~----~~~~l~~H~~----~-----H~~~~~~~C~~C~k~f~~~~~L~~ 63 (74)
T 2lce_A 18 YKCDRCQASFR----YKGNLASHKT----V-----HTGEKPYRCNICGAQFNRPANLKT 63 (74)
T ss_dssp BCCTTSSCCBS----CHHHHHHHHH----H-----HCCCCSEECTTTCCEESCHHHHHH
T ss_pred eECCCCCceeC----CHHHHHHHHH----H-----cCCCCCEECCCCCchhCCHHHHHH
Confidence 46999999873 2333222110 0 112345899999999977665544
No 120
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=30.51 E-value=25 Score=29.42 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecC-hhHH
Q 009909 366 EGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLL 411 (522)
Q Consensus 366 g~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~RiiLTrd-~~l~ 411 (522)
+.|...||..|+-. +..|.-++..|...|-.|+|+| ++|.
T Consensus 82 ~~l~~~~~~~g~~~------~~~D~lIaA~A~~~~~~lvT~d~~df~ 122 (134)
T 3zvk_A 82 GELRTELEQKGLII------GNNDLLIASHAIAENATLVTNNIKEFK 122 (134)
T ss_dssp HHHHHHHHHTTCCC------CHHHHHHHHHHHHHTCEEEESSTTTSC
T ss_pred HHHHHHHHHcCCCC------CccHHHHHHHHHHCCCEEEECCHHHhc
Confidence 45666677777641 2457789999999999999999 6664
No 121
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=30.35 E-value=43 Score=29.68 Aligned_cols=53 Identities=11% Similarity=0.328 Sum_probs=33.3
Q ss_pred EEEcCCCHHHHHHHHHHhcCcCcccCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeE
Q 009909 422 YRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 500 (522)
Q Consensus 422 ~~v~~~~~~~QL~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 500 (522)
+.|+-.-...++..+++.| +. .|-.|+.|+.+-.. +.+ +...-|-.|..||..
T Consensus 82 lii~G~~~~~~i~~~L~~y---I~---~yVlC~~C~sPdT~--L~k------------------~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 82 VVLQGRFTPYLIANKLKKY---IK---EYVICPVCGSPDTK--IIK------------------RDRFHFLKCEACGAE 134 (148)
T ss_dssp EEESSCCCHHHHHHHHHHH---HH---HHSSCSSSCCTTCC--CCB------------------SSSSBCCCCSSSCCC
T ss_pred EEEEeeeCHHHHHHHHHHH---HH---HEEECCCCCCcCcE--EEE------------------eCCEEEEEecCCCCC
Confidence 4454444467888888888 11 24579999997431 211 123458889999864
No 122
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=30.32 E-value=25 Score=36.13 Aligned_cols=47 Identities=17% Similarity=0.465 Sum_probs=28.4
Q ss_pred HHHHHHhc-CcCcccCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCe
Q 009909 433 LLEVIEAF-QLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQ 499 (522)
Q Consensus 433 L~~v~~~f-~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgk 499 (522)
+.+|+..+ .++........+|+.||..- |.........+|.|-+||.
T Consensus 16 I~dvi~~~v~lkk~G~~~~~~CPfh~ekt--------------------pSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 16 IVDVISEYLNLEKVGSNYRTNCPFHPDDT--------------------PSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp HHHHHHHHSCCEEETTEEEECCSSSCCSS--------------------CCEEEETTTTEEEETTTCC
T ss_pred HHHHHHHhcccccCCCeEEeeCcCCCCCC--------------------CeEEEECCCCEEEECCCCC
Confidence 45666655 44444444456899998631 2222223457999999995
No 123
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=30.04 E-value=38 Score=28.15 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecC-hhHHH
Q 009909 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLLR 412 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~RiiLTrd-~~l~~ 412 (522)
.|...+|..|+-. +..|.-++..|...|-.|+|+| ++|.+
T Consensus 82 ~l~~~~~~~g~~~------~~~D~lIaA~A~~~~~~lvT~d~~dF~~ 122 (132)
T 3tnd_A 82 QIRAELARQGRPV------GPFDQMIAGHARSRGLIIVTNNTREFER 122 (132)
T ss_dssp HHHHHHHHHTCCC------CHHHHHHHHHHHHTTCEEEESCCHHHHT
T ss_pred HHHHHHHHCCCCC------CchHHHHHHHHHHcCCEEEECCHHHhCC
Confidence 4555556567541 3457789999999999999999 77743
No 124
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=29.90 E-value=18 Score=38.61 Aligned_cols=32 Identities=6% Similarity=0.171 Sum_probs=24.3
Q ss_pred HHHHHHhcCCceecCCCCCCCh--HHHHHhhhcCCc
Q 009909 368 LAKHLRCVGIDAATPRSKKPEP--RELIDQTSKEKR 401 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d--~~ll~~A~~e~R 401 (522)
++||+|+.||+|.++.+ .|+ -.+...|.++|.
T Consensus 38 i~Ry~r~~G~~v~~v~G--~D~hG~~ie~~a~k~g~ 71 (542)
T 3u1f_A 38 IGRYHRVKGERVFALTG--TDEHGQKVAEAAKQKQV 71 (542)
T ss_dssp HHHHHHHTTCCEEEEEE--EECCSHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCccccCc--cCcChHHHHHHHHHcCC
Confidence 79999999999999864 333 257777877774
No 125
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.61 E-value=26 Score=21.91 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=15.3
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|=.-++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~L~~ 27 (37)
T 2elm_A 7 GHLYYCSQCHYSSITKNCLKR 27 (37)
T ss_dssp SCEEECSSSSCEEECHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 346889999999976555443
No 126
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.95 E-value=18 Score=23.76 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=16.4
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yts_A 10 EKPYICNECGKSFIQKSHLNR 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCEECCCCChhhCChHHHHH
Confidence 345789999999987776655
No 127
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=28.78 E-value=18 Score=22.85 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=15.0
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 5 k~~~C~~C~k~f~~~~~L~~ 24 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQALGG 24 (39)
T ss_dssp SSEECTTTCCEESSHHHHHH
T ss_pred CceECCCCCcccCCHHHHHH
Confidence 34789999999977665544
No 128
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=28.63 E-value=17 Score=31.29 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=9.3
Q ss_pred eeecCCCCeEE
Q 009909 491 FWQCMDCNQLY 501 (522)
Q Consensus 491 F~~C~~CgkvY 501 (522)
--+||.||++|
T Consensus 99 ~L~Cp~cgr~y 109 (125)
T 3q87_A 99 SLRCDMCGLIY 109 (125)
T ss_dssp EEEETTTCCEE
T ss_pred EEECCCCCCEe
Confidence 45699999998
No 129
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.63 E-value=22 Score=21.88 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=15.5
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|=.-++..+
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elq_A 7 GKPFKCSLCEYATRSKSNLKA 27 (36)
T ss_dssp CCSEECSSSSCEESCHHHHHH
T ss_pred CCCccCCCCCchhCCHHHHHH
Confidence 345789999999976655544
No 130
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=28.50 E-value=18 Score=24.49 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=15.4
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.|||.|-.-++..+
T Consensus 6 kp~~C~~C~k~F~~~~~L~~ 25 (48)
T 3iuf_A 6 KPYACDICGKRYKNRPGLSY 25 (48)
T ss_dssp SCEECTTTCCEESSHHHHHH
T ss_pred cCEECCCcCcccCCHHHHHH
Confidence 45789999999977666554
No 131
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.48 E-value=15 Score=21.36 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=12.5
Q ss_pred eecCCCCeEEecccchh
Q 009909 492 WQCMDCNQLYWEVMSAY 508 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~ 508 (522)
+.|+.||+.|=.-++..
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLI 19 (30)
T ss_dssp SBCTTTCCBCSSSHHHH
T ss_pred cCCcccCcccCChHHHH
Confidence 57999999986555443
No 132
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=27.76 E-value=20 Score=32.95 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.8
Q ss_pred ceeecCCCCeEEecc
Q 009909 490 QFWQCMDCNQLYWEV 504 (522)
Q Consensus 490 ~F~~C~~CgkvYW~G 504 (522)
..|+|+.||-|| .|
T Consensus 154 ~~~~C~~CG~~~-~g 167 (191)
T 1lko_A 154 TKWRCRNCGYVH-EG 167 (191)
T ss_dssp EEEEETTTCCEE-EE
T ss_pred ceEEECCCCCEe-eC
Confidence 489999999997 35
No 133
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.63 E-value=20 Score=23.63 Aligned_cols=20 Identities=10% Similarity=0.589 Sum_probs=15.6
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emi_A 11 RHYECSECGKAFIQKSTLSM 30 (46)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHH
Confidence 45789999999987666554
No 134
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.62 E-value=37 Score=25.74 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=8.9
Q ss_pred CCcccCCCCcc
Q 009909 450 MSRCTKCNGRF 460 (522)
Q Consensus 450 ~sRC~~CN~~l 460 (522)
-.||..||..+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wg2_A 15 NNRCFSCNKKV 25 (64)
T ss_dssp SCSCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 47999999864
No 135
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=27.31 E-value=28 Score=29.63 Aligned_cols=36 Identities=17% Similarity=0.498 Sum_probs=23.5
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecc
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEV 504 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~G 504 (522)
+.-|+.||..|.++. ++ ......+.|+.||-.+=..
T Consensus 4 ~~FCp~CgnlL~~~~-------------~~------~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPRE-------------DK------ENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEE-------------ET------TTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccc-------------cC------cCCCCEEECCcCCCeeecC
Confidence 345999999885310 00 1124588999999887543
No 136
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.26 E-value=35 Score=28.60 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEeccc
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVM 505 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~Gs 505 (522)
+.-|+.||..|.++. +. ......+.|+.||-++-..+
T Consensus 4 m~FCp~Cgn~L~~~~----------------~~---~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 4 FQYCIECNNMLYPRE----------------DK---VDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCCSSSCCCCEECC----------------CT---TTCCCCEECSSSCCEECCSC
T ss_pred ceeCcCCCCEeeEcc----------------cC---CCCeeEEECCCCCCeEEcCC
Confidence 455999999986321 00 01234788999998876543
No 137
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=27.08 E-value=10 Score=23.11 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=11.7
Q ss_pred eecCCCCeEEecccch
Q 009909 492 WQCMDCNQLYWEVMSA 507 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~ 507 (522)
+.|+.|||.|-.-++.
T Consensus 3 ~~C~~C~k~f~~~~~L 18 (32)
T 2kfq_A 3 FACPACPKRFMRSDAL 18 (32)
T ss_dssp SSSSSSCTTHHHHHTT
T ss_pred CCCCCCCcccCCHHHH
Confidence 5799999988654443
No 138
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.06 E-value=20 Score=23.48 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=16.3
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yrj_A 10 EKPYRCGECGKAFAQKANLTQ 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCCccCCHHHHHH
Confidence 345789999999987766655
No 139
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.89 E-value=13 Score=22.81 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=13.9
Q ss_pred eecCCCCeEEecccchhh
Q 009909 492 WQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~~CgkvYW~GsH~~r 509 (522)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~F~~~~~L~~ 20 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSK 20 (33)
T ss_dssp CCCSSSCCCCSSHHHHHH
T ss_pred ccCCCCCchhCCHHHHHH
Confidence 579999999977666554
No 140
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.82 E-value=16 Score=26.13 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=9.6
Q ss_pred ceeecCCCCeEE
Q 009909 490 QFWQCMDCNQLY 501 (522)
Q Consensus 490 ~F~~C~~CgkvY 501 (522)
.-+.||.|++.|
T Consensus 11 ~~~~CPrCn~~f 22 (49)
T 2e72_A 11 GRKICPRCNAQF 22 (49)
T ss_dssp SCCCCTTTCCCC
T ss_pred CceeCCcccccc
Confidence 346799999877
No 141
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=26.51 E-value=20 Score=38.63 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=25.3
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~R 401 (522)
|||+||..||||.++...+.-+..+...|.++|.
T Consensus 55 laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~ 88 (564)
T 3kfl_A 55 LGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGV 88 (564)
T ss_dssp HHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTC
T ss_pred HHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCC
Confidence 7999999999998876533223467777777764
No 142
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.13 E-value=26 Score=23.07 Aligned_cols=20 Identities=10% Similarity=0.301 Sum_probs=15.7
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCSKYLTQ 30 (46)
T ss_dssp CCEECSSSCCEESSSHHHHH
T ss_pred CCEECcCCCCcCCCHHHHHH
Confidence 45789999999987766554
No 143
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.05 E-value=22 Score=23.23 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=15.9
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (44)
T 2epv_A 10 EKPYECNECGKAFIWKSLLIV 30 (44)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCeECCCCCcccCchHHHHH
Confidence 345789999999977666554
No 144
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=26.00 E-value=22 Score=22.69 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=15.4
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~C~~C~k~f~~~~~l~~ 29 (42)
T 2epc_A 10 TPYLCGQCGKSFTQRGSLAV 29 (42)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHH
Confidence 45789999999977665554
No 145
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=25.66 E-value=22 Score=37.97 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~R 401 (522)
|||+||..||+|.++.+.+.-+..+...|.++|.
T Consensus 54 laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~ 87 (536)
T 4dlp_A 54 MARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGI 87 (536)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTS
T ss_pred HHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCC
Confidence 7999999999998876533224567777776653
No 146
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.57 E-value=26 Score=32.65 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=12.5
Q ss_pred CceeecCCCCeEEe
Q 009909 489 LQFWQCMDCNQLYW 502 (522)
Q Consensus 489 ~~F~~C~~CgkvYW 502 (522)
..+|+|+.||-+|-
T Consensus 169 ~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 169 DKFHLCPICGYIHK 182 (202)
T ss_dssp CCEEECSSSCCEEE
T ss_pred CcEEEECCCCCEEc
Confidence 46999999999996
No 147
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.55 E-value=27 Score=22.29 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=15.3
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|=.-++..+
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2en2_A 9 EKPYKCETCGARFVQVAHLRA 29 (42)
T ss_dssp SCSEECTTTCCEESSHHHHHH
T ss_pred CCCEeCCCcChhhCCHHHHHH
Confidence 345789999999976655544
No 148
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.50 E-value=19 Score=22.09 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=15.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 7 ~~~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elr_A 7 GKTHLCDMCGKKFKSKGTLKS 27 (36)
T ss_dssp CSSCBCTTTCCBCSSHHHHHH
T ss_pred CCCeecCcCCCCcCchHHHHH
Confidence 345789999999976555444
No 149
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=25.49 E-value=27 Score=25.46 Aligned_cols=12 Identities=25% Similarity=0.905 Sum_probs=10.5
Q ss_pred CceeecCCCCeE
Q 009909 489 LQFWQCMDCNQL 500 (522)
Q Consensus 489 ~~F~~C~~Cgkv 500 (522)
..||.|..||..
T Consensus 41 T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 41 TIFYKCTKCGHT 52 (57)
T ss_dssp EEEEEESSSCCE
T ss_pred cEEEEcCCCCCE
Confidence 469999999986
No 150
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.46 E-value=23 Score=23.29 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=16.4
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2em3_A 10 EKPYECKVCSKAFTQKAHLAQ 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 345789999999987776655
No 151
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.35 E-value=79 Score=23.14 Aligned_cols=46 Identities=13% Similarity=0.390 Sum_probs=27.1
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecccchhh
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~GsH~~r 509 (522)
-.|..|+..+. ......... ++. ....-+.|+.|++.|=.-++..+
T Consensus 19 ~~C~~C~~~f~----~~~~l~~H~----~~h-----~~~~~~~C~~C~~~f~~~~~L~~ 64 (77)
T 2cot_A 19 YKCDECGKSFS----HSSDLSKHR----RTH-----TGEKPYKCDECGKAFIQRSHLIG 64 (77)
T ss_dssp SBCSSSCCBCS----CHHHHHHHH----TTT-----CCSCSEECSSSCCEESSHHHHHH
T ss_pred EECCCCCcccC----CHHHHHHHH----HHc-----CCCcCeeCCCCCCccCCHHHHHH
Confidence 46999998773 233322211 111 12346899999999966555444
No 152
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=25.23 E-value=36 Score=27.69 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=22.7
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCe
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgk 499 (522)
..|..||-.-. ..+. .=++ +.-+-...+....||+|+ |++
T Consensus 16 v~C~~C~yt~~--~~~~-~C~~-----~~H~l~~~~a~KRFFkC~-C~~ 55 (92)
T 2kwq_A 16 VTCKTCKYTHF--KPKE-TCVS-----ENHDFHWHNGVKRFFKCP-CGN 55 (92)
T ss_dssp EEETTTCCEES--SCCH-HHHH-----TTCCEEEEEEECEEEECT-TSC
T ss_pred EEccCCcceec--Ccch-hHHh-----cCCceEEEeeeEEEEECC-CCC
Confidence 46999996432 2222 2222 123334445567899997 986
No 153
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=25.05 E-value=34 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.2
Q ss_pred CceeecCCCCeEE
Q 009909 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~CgkvY 501 (522)
...+.|+.||+.+
T Consensus 7 ~~~~~C~~C~~~i 19 (39)
T 2i5o_A 7 EDQVPCEKCGSLV 19 (39)
T ss_dssp CCEEECTTTCCEE
T ss_pred CCCcccccccCcC
Confidence 3467899999975
No 154
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=24.99 E-value=27 Score=30.26 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.8
Q ss_pred CceeecCCCCeEE
Q 009909 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~CgkvY 501 (522)
.+-.+|+.||++|
T Consensus 108 g~p~RCpeCG~~f 120 (129)
T 2y69_F 108 GEAQRCPSCGTHY 120 (129)
T ss_dssp SSCEECTTTCCEE
T ss_pred CCceeCCCCCeEE
Confidence 3468999999987
No 155
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.79 E-value=24 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em4_A 10 QRPYECIECGKAFKTKSSLIC 30 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHH
T ss_pred CcCcCCCCCCCccCCHHHHHH
Confidence 345789999999987766655
No 156
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.70 E-value=66 Score=28.75 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=36.1
Q ss_pred EEEcCCCHHHHHHHHHHhcCcCcccCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEE
Q 009909 422 YRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 422 ~~v~~~~~~~QL~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvY 501 (522)
+.|.-.-...+|.++|+.| +. .|-.|..|+.+-.. +.++ -+...-|-.|..||...
T Consensus 81 lii~G~~~~~~i~~~L~~y---I~---~YVlC~~C~sPdT~--L~~~----------------~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 81 YIVNGSHEANKLQDMLDGF---IK---KFVLCPECENPETD--LHVN----------------PKKQTIGNSCKACGYRG 136 (157)
T ss_dssp EEEEBCCCHHHHHHHHHHH---HH---HTTSCTTTCCSCCE--EEEE----------------TTTTEEEEECSSSCCEE
T ss_pred EEEEeeeCHHHHHHHHHHH---HH---HeEECCCCCCCccE--EEEe----------------cCCCEEEEEccCCCCCC
Confidence 4444433467888888888 21 25679999996421 1000 01224588899999876
Q ss_pred eccc
Q 009909 502 WEVM 505 (522)
Q Consensus 502 W~Gs 505 (522)
=-..
T Consensus 137 ~V~~ 140 (157)
T 2e9h_A 137 MLDT 140 (157)
T ss_dssp ECCC
T ss_pred cccc
Confidence 5444
No 157
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.68 E-value=45 Score=25.28 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=8.9
Q ss_pred CCcccCCCCcc
Q 009909 450 MSRCTKCNGRF 460 (522)
Q Consensus 450 ~sRC~~CN~~l 460 (522)
-.||..|+..+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wfh_A 15 PNRCTVCRKRV 25 (64)
T ss_dssp CCCCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 47999999864
No 158
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=24.63 E-value=24 Score=23.19 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=15.8
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emj_A 11 KPFECAECGKSFSISSQLAT 30 (46)
T ss_dssp CSEECSSSSCEESSHHHHHH
T ss_pred CCEECCCCCcccCCHHHHHH
Confidence 45789999999987766655
No 159
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.50 E-value=26 Score=22.68 Aligned_cols=21 Identities=10% Similarity=0.427 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~ 30 (44)
T 2eox_A 10 SKSYNCNECGKAFTRIFHLTR 30 (44)
T ss_dssp CCCEEETTTTEEESSSHHHHT
T ss_pred CCCeECcccCcccCCHHHHHH
Confidence 345789999999987766554
No 160
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=24.46 E-value=25 Score=22.51 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=16.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~ 28 (42)
T 2el5_A 8 ENPYECSECGKAFNRKDQLIS 28 (42)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCccCCCcChhhCCHHHHHH
Confidence 345789999999987666554
No 161
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.30 E-value=25 Score=23.04 Aligned_cols=21 Identities=10% Similarity=0.392 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytf_A 10 EKPFECSECQKAFNTKSNLIV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCcCCCCCCcccCCHHHHHH
Confidence 345889999999987666555
No 162
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=24.22 E-value=75 Score=33.70 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCCceEEEEechhhHHHHHhhcccCCCccC----cc-----CCCceeeHHHHHHHhhccccCCCCCcCCccHHHHHHHHc
Q 009909 102 SPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELL 172 (522)
Q Consensus 102 d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~----~~-----~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~~~~L 172 (522)
+.+...||||+-.|+..|...|- +--|. |. ....++| |...+.... . ... ....+|..|.+.+-
T Consensus 274 ~~~kpiVgHN~l~Dl~~l~~~F~--~pLP~~~~eFk~~i~~lFP~i~D-TK~la~~~~--~-~~~-~~~~~L~~l~~~l~ 346 (507)
T 3d45_A 274 NSGKLVVGHNMLLDVMHTIHQFY--CPLPADLNEFKEMAICVFPRLLD-TKLMASTQP--F-KDI-INNTSLAELEKRLK 346 (507)
T ss_dssp HHCCEEEESSCHHHHHHHHHHHT--CSCCSSHHHHHHHHHHHCSCEEE-HHHHTTSTT--H-HHH-CCCCCHHHHHHHTT
T ss_pred hCCCeEEEechHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhCCceeE-hHhhhhcCc--c-ccc-cCCCCHHHHHHHHh
Confidence 44577899999999999887652 31110 00 0024789 543322100 0 000 12568999988764
Q ss_pred CCc--Cccc---ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009909 173 DIS--LSKE---LQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (522)
Q Consensus 173 g~~--l~K~---~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~ 217 (522)
..+ .+.- .+...+. .+..+.+-|+.||+.+-.++-.|...+.
T Consensus 347 ~~~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 347 ETPFDPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp STTCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 222 1110 1111111 1123345599999999999999988764
No 163
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=23.85 E-value=25 Score=37.32 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=24.6
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~ 400 (522)
++|++|+.||+|.++.+.+.-+..+...|.++|
T Consensus 41 l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 73 (524)
T 2x1l_A 41 IARFKRLDGYDVRYLTGTDVHGQKMAETAAKEG 73 (524)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHhcCCceeeeCCcCcccHHHHHHHHHcC
Confidence 799999999999988654322345777777665
No 164
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.83 E-value=24 Score=23.05 Aligned_cols=21 Identities=10% Similarity=0.313 Sum_probs=15.8
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.|||.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (45)
T 2epu_A 10 QKPFECTHCGKSFRAKGNLVT 30 (45)
T ss_dssp CCSEEETTTTEEESSHHHHHH
T ss_pred CcCccCCCCCCccCChHHHHH
Confidence 345789999999977665544
No 165
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.83 E-value=24 Score=23.18 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eoz_A 10 EKPYSCNVCGKAFVLSAHLNQ 30 (46)
T ss_dssp CCSEEETTTTEEESSHHHHHH
T ss_pred CCCeECcccChhhCCHHHHHH
Confidence 345789999999987666554
No 166
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.48 E-value=31 Score=22.29 Aligned_cols=20 Identities=10% Similarity=0.383 Sum_probs=15.6
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQRNYLVQ 30 (44)
T ss_dssp CSEECSSSSCEESSSHHHHH
T ss_pred CCeECCCCCchhCCHHHHHH
Confidence 45789999999987766554
No 167
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=23.30 E-value=39 Score=32.70 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=22.3
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecc
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEV 504 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~G 504 (522)
+.-|+.|++++.. . ....-.+|+.||.++|.-
T Consensus 107 ~~fC~~CG~~~~~--~---------------------~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 107 HKYCGYCGHEMYP--S---------------------KTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp TSBCTTTCCBEEE--C---------------------SSSSCEEESSSSCEECCC
T ss_pred CCccccCCCcCcc--C---------------------CCceeeeCCCCCCEecCC
Confidence 4569999998641 0 123455799999999864
No 168
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.28 E-value=26 Score=31.14 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=14.1
Q ss_pred EEEcCCCHHHHHHHHHHhcCcCcc
Q 009909 422 YRVKSLLKNQQLLEVIEAFQLKIS 445 (522)
Q Consensus 422 ~~v~~~~~~~QL~~v~~~f~l~~~ 445 (522)
.++..+ ..|..|.+++||.+.
T Consensus 99 ~lvT~D---~~l~~vA~~~Gv~v~ 119 (165)
T 2lcq_A 99 EIFSDD---YNVQNIASLLGLRFR 119 (165)
T ss_dssp CEECCC---HHHHHHHHHTTCCEE
T ss_pred eEEcCc---HHHHHHHHHCCCeEE
Confidence 445444 348888888888765
No 169
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.26 E-value=27 Score=22.55 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eof_A 10 EKPYECNECQKAFNTKSNLMV 30 (44)
T ss_dssp CCSEECTTTCCEESCHHHHHH
T ss_pred CCCeECCCCCcccCCHhHHHH
Confidence 345789999999987666555
No 170
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.24 E-value=27 Score=22.67 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=15.4
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2emb_A 11 KRYECSKCQATFNLRKHLIQ 30 (44)
T ss_dssp SSEECTTTCCEESCHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 45789999999977665554
No 171
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.22 E-value=26 Score=22.94 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=16.6
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emh_A 10 ERPYICTVCGKAFTDRSNLIK 30 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHH
T ss_pred CCCcCCCCCCchhCCHHHHHH
Confidence 345789999999988776655
No 172
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.16 E-value=27 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.487 Sum_probs=15.8
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2ytp_A 10 ERHYECSECGKAFARKSTLIM 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCcCCcccCCHHHHHH
Confidence 345789999999977666554
No 173
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=23.10 E-value=30 Score=22.67 Aligned_cols=21 Identities=10% Similarity=0.232 Sum_probs=15.8
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.|||.|=.-+|..+
T Consensus 6 ekp~~C~~CgK~F~~~s~L~~ 26 (36)
T 1fv5_A 6 PARFMCLPCGIAFSSPSTLEA 26 (36)
T ss_dssp CCCCEETTTTEECSCHHHHHH
T ss_pred ccCeECCCCCCccCCHhHccC
Confidence 456789999999966666554
No 174
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=23.06 E-value=2e+02 Score=29.76 Aligned_cols=114 Identities=19% Similarity=0.138 Sum_probs=59.1
Q ss_pred HHhhCCCCceEEEEechhhHHHHHhhcccCCCccC----cc-----CCCceeeHHHHHHHhhccccCCCCCcCCccHHHH
Q 009909 97 KELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANI 167 (522)
Q Consensus 97 ~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~----~~-----~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L 167 (522)
..|..+. -..||||+-.|+..+...| .|--|. |. ....++| |.+.+ ....-... ..+.+|++|
T Consensus 275 ~~L~~s~-KpiVGHN~llDl~~l~~~F--~~pLP~~~~eFk~~i~~lFP~i~D-TK~la---~~~~~~~~-~~~~sL~~l 346 (430)
T 2a1r_A 275 HAIANSG-KLVIGHNMLLDVMHTVHQF--YCPLPADLSEFKEMTTCVFPRLLD-TKLMA---STQPFKDI-INNTSLAEL 346 (430)
T ss_dssp HHHHHHC-CEEEESSCHHHHHHHHHHH--TCCCCSSHHHHHHHHHHHCSSEEE-HHHHH---TSTTTTTT-CSCCSHHHH
T ss_pred HHHHhCC-CceEechhHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHCCceee-hHHhh---hccchhhc-cCCCCHHHH
Confidence 3344444 4559999999999887765 232120 00 0135889 54433 21100111 235689998
Q ss_pred HHHHcCCcC--cccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009909 168 CKELLDISL--SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (522)
Q Consensus 168 ~~~~Lg~~l--~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~ 218 (522)
...+-..+. ++-+...+...-.-..++.+-|+.||+.+-.++-.|...|..
T Consensus 347 ~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 347 EKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp HHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 776533222 111100001000011234456999999999999999987743
No 175
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.01 E-value=32 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=16.3
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2en3_A 10 EKPFQCKECGMNFSWSCSLFK 30 (46)
T ss_dssp CCSEECSSSCCEESSSHHHHH
T ss_pred CCCeeCcccChhhCCHHHHHH
Confidence 345789999999987776655
No 176
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.95 E-value=24 Score=22.86 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eoj_A 10 ENPYECCECGKVFSRKDQLVS 30 (44)
T ss_dssp CCSCEETTTTEECSSHHHHHH
T ss_pred CcCeeCCCCCCccCCHHHHHH
Confidence 345789999999987766554
No 177
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.92 E-value=51 Score=25.69 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.7
Q ss_pred CCcccCCCCcc
Q 009909 450 MSRCTKCNGRF 460 (522)
Q Consensus 450 ~sRC~~CN~~l 460 (522)
-.||..|+..+
T Consensus 25 ~~RC~~C~kkv 35 (74)
T 1wfp_A 25 ATRCLSCNKKV 35 (74)
T ss_dssp CCBCSSSCCBC
T ss_pred CccchhhcCcc
Confidence 47999999864
No 178
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.91 E-value=69 Score=25.13 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=10.7
Q ss_pred cCcCCCcccCCCCcc
Q 009909 446 EDQLMSRCTKCNGRF 460 (522)
Q Consensus 446 ~~~~~sRC~~CN~~l 460 (522)
++..-+.|..|+..+
T Consensus 10 pd~~~~~C~~C~~~F 24 (84)
T 1x4u_A 10 PTNNFGNCTGCSATF 24 (84)
T ss_dssp SCCCCSSCSSSCCCC
T ss_pred cCCCCCcCcCcCCcc
Confidence 344457899999876
No 179
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.86 E-value=27 Score=22.82 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eor_A 10 EKPYNCEECGKAFIHDSQLQE 30 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHH
T ss_pred CcCccCCCCCCCcCCHHHHHH
Confidence 345789999999987666554
No 180
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.86 E-value=22 Score=23.42 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=15.6
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2enh_A 11 KPYECDVCRKAFSHHASLTQ 30 (46)
T ss_dssp SSCBCTTTCCBCSSSHHHHH
T ss_pred CCcCCCCcCchhCCHHHHHH
Confidence 45789999999987766654
No 181
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.85 E-value=43 Score=22.27 Aligned_cols=21 Identities=10% Similarity=0.370 Sum_probs=17.0
Q ss_pred CceeecC--CCCeEEecccchhh
Q 009909 489 LQFWQCM--DCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~--~CgkvYW~GsH~~r 509 (522)
+.-+.|+ .|||.|-.-++..+
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~ 38 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRS 38 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHH
Confidence 4568895 89999998887765
No 182
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.77 E-value=27 Score=22.85 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=16.4
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep2_A 10 EKPYECSICGKSFTKKSQLHV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCcCCCCCCcccCCHHHHHH
Confidence 345789999999987776655
No 183
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.74 E-value=31 Score=33.59 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.5
Q ss_pred CCceeecCCCCe
Q 009909 488 NLQFWQCMDCNQ 499 (522)
Q Consensus 488 ~~~F~~C~~Cgk 499 (522)
....|+||.|.+
T Consensus 262 gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 262 GRGTHYCPRCQR 273 (273)
T ss_dssp TEEEEECTTTCC
T ss_pred CCCeEECCCCCC
Confidence 356889999975
No 184
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.67 E-value=51 Score=26.19 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=8.4
Q ss_pred CcccCCCCccc
Q 009909 451 SRCTKCNGRFI 461 (522)
Q Consensus 451 sRC~~CN~~l~ 461 (522)
.-|+.|..+|.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 35999999763
No 185
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.62 E-value=28 Score=22.88 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em8_A 10 EKPYKCVECGKGYKRRLDLDF 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeECcccCchhCCHHHHHH
Confidence 345789999999987666554
No 186
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.61 E-value=28 Score=22.13 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=15.0
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 9 k~~~C~~C~k~f~~~~~L~~ 28 (41)
T 2ept_A 9 RVYECQECGKSFRQKGSLTL 28 (41)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCCCCcCCHHHHHH
Confidence 45789999999976655544
No 187
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.52 E-value=33 Score=22.49 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=16.5
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yto_A 10 EKPYKCSDCGKAFTRKSGLHI 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCEECcccCCccCCHhHHHH
Confidence 345889999999987776655
No 188
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.44 E-value=33 Score=22.34 Aligned_cols=20 Identities=10% Similarity=0.364 Sum_probs=16.1
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIM 30 (46)
T ss_dssp CSEECSSSCCEESSSHHHHH
T ss_pred CCeeCCCCCCccCCHHHHHH
Confidence 45789999999988776655
No 189
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=22.40 E-value=30 Score=28.28 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=12.6
Q ss_pred cccCCceeecCCCCeE
Q 009909 485 FDKNLQFWQCMDCNQL 500 (522)
Q Consensus 485 ~~~~~~F~~C~~Cgkv 500 (522)
++...+|..|..|||-
T Consensus 69 Ld~~~~YRvCn~CGkP 84 (96)
T 3mhs_E 69 LDKPIQYRVCEKCGKP 84 (96)
T ss_dssp TSSSCCCEEETTTCCE
T ss_pred CCCcccchhhhccCCc
Confidence 4455789999999983
No 190
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.15 E-value=66 Score=28.43 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=25.0
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcC
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKE 399 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e 399 (522)
++..||..||+|.++.. ..+..++++.|+++
T Consensus 38 va~~l~~~G~eVi~lG~-~~p~e~lv~aa~~~ 68 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGL-RQTPEQVAMAAVQE 68 (161)
T ss_dssp HHHHHHHTTCEEECCCS-BCCHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEECCC-CCCHHHHHHHHHhc
Confidence 69999999999998864 45667888887654
No 191
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.07 E-value=29 Score=22.73 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.|||.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em7_A 10 EKPYKCEECGKGFICRRDLYT 30 (46)
T ss_dssp CCSEECSSSCCEESCHHHHHH
T ss_pred CcCccCCCccchhCCHHHHHH
Confidence 345789999999987666554
No 192
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.96 E-value=33 Score=22.42 Aligned_cols=21 Identities=10% Similarity=0.487 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep3_A 10 EKPYRCAECGKAFTDRSNLFT 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCchhCCHHHHHH
Confidence 345889999999987666554
No 193
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.92 E-value=33 Score=22.39 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eml_A 10 EKPYECSVCGKAFSHRQSLSV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeeCCCcCCccCCHHHHHH
Confidence 345789999999987666554
No 194
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=21.91 E-value=25 Score=37.03 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=24.1
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~ 400 (522)
+||++|+.||+|.++.+.+.-+..+...|.++|
T Consensus 32 ~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 64 (500)
T 2d5b_A 32 LARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64 (500)
T ss_dssp HHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHT
T ss_pred HHHHHHcCCCceeeecccCCchHHHHHHHHHcC
Confidence 799999999999987653322345777776665
No 195
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=21.88 E-value=63 Score=28.49 Aligned_cols=46 Identities=9% Similarity=-0.083 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecChhHHHhhc
Q 009909 366 EGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQY 415 (522)
Q Consensus 366 g~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~RiiLTrd~~l~~~~~ 415 (522)
+.+.+.||..|.-- ..+..|--|...|...|-+|+|+|++|.+-..
T Consensus 95 ~~i~~~l~~~G~~~----~i~~~D~lIAAtA~~~gl~LvT~d~dF~~i~~ 140 (156)
T 3h87_A 95 LEVQTLLADRGHHR----GPSIPDLLIAATAELSGLTVLHVDKDFDAIAA 140 (156)
T ss_dssp HHHHHHHHHTTCTT----SSCHHHHHHHHHHHHHTCEEEESCTHHHHHHH
T ss_pred HHHHHHHHhcCCCC----CCChhHHHHHHHHHHCCCEEEEeChhhhhhhh
Confidence 45667788888531 01234677899999999999999999865443
No 196
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.83 E-value=33 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQRVHLTQ 30 (46)
T ss_dssp CCSEECTTTCCEESSSHHHHT
T ss_pred CCCeECCCCCcccCCHHHHHH
Confidence 345789999999987766554
No 197
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=21.77 E-value=35 Score=24.64 Aligned_cols=13 Identities=31% Similarity=1.060 Sum_probs=10.9
Q ss_pred CCceeecCCCCeE
Q 009909 488 NLQFWQCMDCNQL 500 (522)
Q Consensus 488 ~~~F~~C~~Cgkv 500 (522)
-++.|+|+.|++.
T Consensus 8 ~eD~WkC~~C~k~ 20 (53)
T 2cr8_A 8 SEDEWQCTECKKF 20 (53)
T ss_dssp CSCCEECSSSCCE
T ss_pred Ccceeeccccccc
Confidence 4679999999974
No 198
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.68 E-value=34 Score=22.30 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=16.4
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
..-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eow_A 10 EKPYKCNECGKAFRARSSLAI 30 (46)
T ss_dssp CCCEECTTSCCEESSHHHHHH
T ss_pred CCCeeccccCChhcCHHHHHH
Confidence 345889999999987766655
No 199
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=21.67 E-value=30 Score=19.61 Aligned_cols=18 Identities=11% Similarity=0.410 Sum_probs=13.9
Q ss_pred eecC--CCCeEEecccchhh
Q 009909 492 WQCM--DCNQLYWEVMSAYL 509 (522)
Q Consensus 492 ~~C~--~CgkvYW~GsH~~r 509 (522)
+.|+ .||+.|-.-++..+
T Consensus 3 ~~C~~~~C~k~f~~~~~l~~ 22 (29)
T 2ab3_A 3 YVCHFENCGRSFNDRRKLNR 22 (29)
T ss_dssp EEECSTTTCEEESSHHHHHH
T ss_pred CCCcCCcCcCccCCHHHHHH
Confidence 5799 99999977666544
No 200
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.62 E-value=39 Score=32.80 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=9.9
Q ss_pred CCceeecCCCCe
Q 009909 488 NLQFWQCMDCNQ 499 (522)
Q Consensus 488 ~~~F~~C~~Cgk 499 (522)
....|.||.|.+
T Consensus 252 gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 252 GRGTHFCPTCQG 263 (266)
T ss_dssp SCEEEECTTTTT
T ss_pred CCceEECCCCCC
Confidence 457889999986
No 201
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.58 E-value=56 Score=24.86 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=27.0
Q ss_pred CcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecccch
Q 009909 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSA 507 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~GsH~ 507 (522)
.+|..||.++.. +++ ..-..+ .+.+-..|..|++..-.|+.+
T Consensus 16 ~~C~~C~~~I~~------~~~-------~a~~~~--~H~~CF~C~~C~~~L~~g~~f 57 (81)
T 1x6a_A 16 EFCHGCSLLMTG------PFM-------VAGEFK--YHPECFACMSCKVIIEDGDAY 57 (81)
T ss_dssp CBCTTTCCBCCS------CCB-------CCTTCC--BCTTSCBCTTTCCBCCTTSCE
T ss_pred CcCccCCCCcCc------eEE-------EECCce--eccccCCccCCCCccCCCCcE
Confidence 589999997531 111 111222 355667899999998877765
No 202
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.45 E-value=30 Score=22.68 Aligned_cols=20 Identities=10% Similarity=0.461 Sum_probs=15.7
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em2_A 11 KPFKCKECGKAFRQNIHLAS 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCEECCcCCchhCCHHHHHH
Confidence 45789999999987766655
No 203
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.44 E-value=20 Score=22.94 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=14.9
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 10 k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGSLIV 29 (42)
T ss_dssp CSBCCTTTTCCBSSHHHHHT
T ss_pred CCeeCCCccchhCCHHHHHH
Confidence 45789999999977655444
No 204
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=21.34 E-value=31 Score=22.64 Aligned_cols=21 Identities=10% Similarity=0.471 Sum_probs=16.0
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2el6_A 10 VNPYKCSQCEKSFSGKLRLLV 30 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHH
Confidence 345789999999987666554
No 205
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.23 E-value=31 Score=22.60 Aligned_cols=21 Identities=10% Similarity=0.368 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2eq0_A 10 EKPYKCHECGKVFRRNSHLAR 30 (46)
T ss_dssp CCCEECTTTCCEESSHHHHHH
T ss_pred CCCeECCCCCchhCCHHHHHH
Confidence 345789999999987666554
No 206
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=21.12 E-value=36 Score=23.39 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=16.1
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 22 ~k~~~C~~C~k~f~~~~~L~~ 42 (54)
T 1yui_A 22 EQPATCPICYAVIRQSRNLRR 42 (54)
T ss_dssp SCCEECTTTCCEESSHHHHHH
T ss_pred CCCccCCCCCcccCCHHHHHH
Confidence 456889999999977666554
No 207
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.02 E-value=36 Score=33.08 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=9.7
Q ss_pred CCceeecCCCCe
Q 009909 488 NLQFWQCMDCNQ 499 (522)
Q Consensus 488 ~~~F~~C~~Cgk 499 (522)
....|.||.|.+
T Consensus 259 gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 259 GRGTHFCPVCQQ 270 (271)
T ss_dssp TEEEEECTTTSC
T ss_pred CCceEECCCCCC
Confidence 356889999986
No 208
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.95 E-value=30 Score=22.63 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2en1_A 10 EKPFKCEECGKRFTQNSQLHS 30 (46)
T ss_dssp CCSEEETTTTEEESSHHHHHH
T ss_pred CCCeeCCCCCcccCCHHHHHH
Confidence 345789999999987766554
No 209
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=20.94 E-value=71 Score=29.23 Aligned_cols=54 Identities=20% Similarity=0.589 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCcCcccCcCCCcccC--CCC-ccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEeccc
Q 009909 431 QQLLEVIEAFQLKISEDQLMSRCTK--CNG-RFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVM 505 (522)
Q Consensus 431 ~QL~~v~~~f~l~~~~~~~~sRC~~--CN~-~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~Gs 505 (522)
.-|..+++.|. ...|.+|++ ||+ +++ |+ |...+| ....---.||+|+-||=.-|
T Consensus 92 ~Gl~~M~eKy~-----~g~FG~CPRv~C~~q~~L--Pv----------GlSd~p----g~~~VKlyCP~C~DvY~p~s 148 (182)
T 1qf8_A 92 RGIAQMLEKYQ-----QGDFGYCPRVYCENQPML--PI----------GLSDIP----GEAMVKLYCPKCMDVYTPKS 148 (182)
T ss_dssp HHHHHHHHHHH-----TTTTCBCCBGGGTTCBCE--EE----------CSCSST----TSCBCEEECTTTCCEECCSS
T ss_pred HHHHHHHHhhh-----cCcCCCCCccccCCCccc--CC----------ccCCCC----CCCceEEECCCccceeCCCc
Confidence 45667777774 234889985 654 333 33 111222 22344566999999996644
No 210
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.80 E-value=75 Score=24.95 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=22.1
Q ss_pred cCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEec
Q 009909 446 EDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWE 503 (522)
Q Consensus 446 ~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~ 503 (522)
++..-+.|..|+..+- + ...-..|..||+||=.
T Consensus 17 pd~~~~~C~~C~~~Fs---~----------------------~~RrHHCR~CG~v~C~ 49 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFT---T----------------------TVRRHHCRNCGYVLCG 49 (84)
T ss_dssp CTTTCCBCTTTCCBCC---T----------------------TSCCEECTTTCCEECT
T ss_pred cCCCCCCCcCcCCccc---c----------------------chhcccccCCCcEECh
Confidence 3444578999998762 1 1234679999999843
No 211
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=22 Score=22.71 Aligned_cols=20 Identities=10% Similarity=0.404 Sum_probs=15.4
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 9 k~~~C~~C~k~f~~~~~L~~ 28 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRLVQ 28 (42)
T ss_dssp CSCBCTTTCCBCSSHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 34789999999987666555
No 212
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.70 E-value=48 Score=23.64 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=14.2
Q ss_pred CceeecCCCCeEEecccch
Q 009909 489 LQFWQCMDCNQLYWEVMSA 507 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~ 507 (522)
+.-+.|+.||+.|-.-++.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l 30 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEAN 30 (62)
T ss_dssp SSEEECSSSCCEEEHHHHH
T ss_pred CCCccCCCCCchhccHHHh
Confidence 4568899999999664443
No 213
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.64 E-value=37 Score=32.97 Aligned_cols=12 Identities=17% Similarity=0.623 Sum_probs=9.5
Q ss_pred CCceeecCCCCe
Q 009909 488 NLQFWQCMDCNQ 499 (522)
Q Consensus 488 ~~~F~~C~~Cgk 499 (522)
....|.||.|.+
T Consensus 257 gR~t~~CP~CQ~ 268 (268)
T 1k82_A 257 QRATFYCRQCQK 268 (268)
T ss_dssp TEEEEECTTTCC
T ss_pred CCceEECCCCCC
Confidence 356889999974
No 214
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=20.61 E-value=31 Score=22.66 Aligned_cols=20 Identities=10% Similarity=0.446 Sum_probs=16.2
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ely_A 11 KPFKCVECGKGFSRRSALNV 30 (46)
T ss_dssp CSBCCSSSCCCBSSTTHHHH
T ss_pred CCcccCccCcccCCHHHHHH
Confidence 45789999999988777665
No 215
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.61 E-value=63 Score=24.27 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecccch
Q 009909 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSA 507 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~GsH~ 507 (522)
-.+|..||.++..+ ++ ..-... .+.+-..|..|++....|+.+
T Consensus 5 ~~~C~~C~~~I~~~------~v-------~a~~~~--wH~~CF~C~~C~~~L~~~~~f 47 (73)
T 1wig_A 5 SSGCDSCEKYITGR------VL-------EAGEKH--YHPSCALCVRCGQMFAEGEEM 47 (73)
T ss_dssp CCSCSSSCCCCSSC------CB-------CCSSCC--BCTTTSCCSSSCCCCCSSCCC
T ss_pred cCCcccCCCEecCe------eE-------EeCCCC--CCCCcCEeCCCCCCCCCCCee
Confidence 35899999976421 11 111222 355667899999988766654
No 216
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.58 E-value=22 Score=23.33 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=15.9
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2enf_A 10 EKPYKCNECGKVFTQNSHLVR 30 (46)
T ss_dssp CCSCBCSSSCCBCSSHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 345789999999977666554
No 217
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=20.58 E-value=35 Score=29.96 Aligned_cols=17 Identities=12% Similarity=0.464 Sum_probs=13.5
Q ss_pred CCceeecCCCCeEEecc
Q 009909 488 NLQFWQCMDCNQLYWEV 504 (522)
Q Consensus 488 ~~~F~~C~~CgkvYW~G 504 (522)
.-...+|+.||++||.=
T Consensus 44 rL~~~rC~~CG~~~~PP 60 (145)
T 3irb_A 44 KIIGSKCSKCGRIFVPA 60 (145)
T ss_dssp CCEEEECTTTCCEEESC
T ss_pred eEEEEEeCCCCcEEcCc
Confidence 34577899999999973
No 218
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.43 E-value=75 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.700 Sum_probs=21.5
Q ss_pred cCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEe
Q 009909 446 EDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYW 502 (522)
Q Consensus 446 ~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW 502 (522)
++..-+.|..|+..+- + ...-..|..||+||=
T Consensus 15 ~d~~~~~C~~C~~~Fs---~----------------------~~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFS---I----------------------SRRKHHCRNCGHIFC 46 (82)
T ss_dssp CCCCCCBCTTTCCBCB---T----------------------TBCCEECTTTCCEEC
T ss_pred cCccCCcccCcCCccc---C----------------------ccccccCCCCCCEEC
Confidence 4444578999998762 1 123456999999874
No 219
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.41 E-value=66 Score=27.41 Aligned_cols=34 Identities=21% Similarity=0.648 Sum_probs=22.9
Q ss_pred cccCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEe
Q 009909 444 ISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYW 502 (522)
Q Consensus 444 ~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW 502 (522)
..++..-+.|..|+..+- + ...-+.|..||+||=
T Consensus 63 W~~d~~~~~C~~C~~~Fs---~----------------------~~RrHHCR~CG~vfC 96 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFS---V----------------------TVRRHHCRQCGNIFC 96 (125)
T ss_dssp CCCGGGCCBCTTTCCBCC---S----------------------SSCCEECTTTCCEEC
T ss_pred cccCCCCCCCcCcCCccc---c----------------------ccccccCCCCCeEEC
Confidence 344444678999998762 1 123467999999984
No 220
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.36 E-value=95 Score=23.56 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=8.5
Q ss_pred eeecCCCCeEEeccc
Q 009909 491 FWQCMDCNQLYWEVM 505 (522)
Q Consensus 491 F~~C~~CgkvYW~Gs 505 (522)
-+.|+.|++.|-.-+
T Consensus 36 ~~~C~~C~~~f~~~~ 50 (96)
T 2dmd_A 36 PYKCKTCDYAAADSS 50 (96)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CEeCCCCCCccCCHH
Confidence 455666666665433
No 221
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=20.32 E-value=30 Score=37.11 Aligned_cols=33 Identities=6% Similarity=0.020 Sum_probs=23.8
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~ 400 (522)
|||+||+.||+|.++.+.+.-+..+...|.++|
T Consensus 47 laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 79 (560)
T 3h99_A 47 WVRYQRMRGHEVNFICADDAHGTPIMLKAQQLG 79 (560)
T ss_dssp HHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHT
T ss_pred HHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhC
Confidence 899999999999987653322345666776655
No 222
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=20.27 E-value=31 Score=36.31 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=24.3
Q ss_pred HHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009909 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 368 Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~ 400 (522)
++|++|+.||+|.++.+.+.-+..+...|.++|
T Consensus 34 ~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 66 (497)
T 2csx_A 34 IARYYRLRDYDVFFLTGTDEHGLKIQKKAEELG 66 (497)
T ss_dssp HHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSS
T ss_pred HHHHHHhcCCceeeecccCCCcHHHHHHHHHcC
Confidence 799999999999988653322345777777765
No 223
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.23 E-value=23 Score=22.73 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=15.1
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-+...+
T Consensus 10 k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQTLKS 29 (42)
T ss_dssp CCBCCSSSCCCBSSHHHHHH
T ss_pred CCEECCCCCCccCCHHHHHH
Confidence 45789999999977665544
No 224
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.14 E-value=34 Score=22.44 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=16.2
Q ss_pred CceeecCCCCeEEecccchhh
Q 009909 489 LQFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 489 ~~F~~C~~CgkvYW~GsH~~r 509 (522)
+.-+.|+.||+.|-.-++..+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2eoo_A 10 ERPYGCNECGKNFGRHSHLIE 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCEEccccCcccCCHHHHHH
Confidence 345789999999987766655
No 225
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.01 E-value=25 Score=23.01 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=15.2
Q ss_pred ceeecCCCCeEEecccchhh
Q 009909 490 QFWQCMDCNQLYWEVMSAYL 509 (522)
Q Consensus 490 ~F~~C~~CgkvYW~GsH~~r 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eq3_A 11 KPYECNQCGKAFSVRSSLTT 30 (46)
T ss_dssp CSSEETTTTEECSSHHHHHH
T ss_pred CCeECCCCChhhCCHHHHHH
Confidence 45789999999977665544
Done!