BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009910
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 25/202 (12%)
Query: 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNF----DRFSWTAAXXXXXXXXXXXXXXIPACR 148
A+ + +++ V+GG G L V+ L++ D ++ A R
Sbjct: 57 ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR-------------R 103
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
G + + ++ V G D S+ +D + WS++ GD+ AR G +V AS
Sbjct: 104 GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---GDMQTAREGAGLVVASG 160
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 268
V+ GG DG LN + +D + W + T RS AL +D ++ + GG
Sbjct: 161 VIYCLGGYDGL-NILNSVEKYDPHTGHWTNVTPMAT---KRSGAGVALLND-HIYVVGGF 215
Query: 269 SKSKTLNDLYSLDFETMIWTRI 290
+ L+ + + + T WT +
Sbjct: 216 DGTAHLSSVEAYNIRTDSWTTV 237
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIF 265
A+ VL++ GG ++ ++ + +D K+ W L + + +VA++ + +
Sbjct: 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI----TRKRRYVASVSLHDRIYVI 68
Query: 266 GGSSKSKTLNDLYSLDF---ETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK 321
GG L+ + LD+ E +W + R G G G Y++GG
Sbjct: 69 GGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV----RRGLAGATTLGDMIYVSGGFDGS 124
Query: 322 KRHAETLIFDILKGEWSV 339
+RH +D +WS+
Sbjct: 125 RRHTSMERYDPNIDQWSM 142
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R A++ + + VVGG G L V+ N SWT P C
Sbjct: 197 RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT----------PRCY 246
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192
+ + G+ + G D S S+ +D + W VV + G
Sbjct: 247 VGATVLRGRLYAIAG--YDGNSLLSSIECYDPIIDSWEVVTSMG 288
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 158 KVLLVGGK---TDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFG 214
K+ +V GK T++ D SV +D WS V+ ++P+ GH V+ + ++ G
Sbjct: 111 KIYVVAGKDLQTEASLD--SVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLG 165
Query: 215 GEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 274
G+ ++ N + +++ K W L T PRS A++ K ++I GG ++
Sbjct: 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKT---PRSMFGVAIHKGK-IVIAGGVTEDGLS 221
Query: 275 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS----RKKRHAETLIF 330
+ + D +T W ++ P R+ V Y GG + K A T +
Sbjct: 222 ASVEAFDLKTNKW---EVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278
Query: 331 DILKGE 336
DI K E
Sbjct: 279 DIWKYE 284
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 190 AKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247
+ ++PVAR HT S + L+L GG + L+D +FD+K+ W +
Sbjct: 432 SSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW---SMIKSLSH 488
Query: 248 PRSNHVAALYDDKNLLIFGGSSK 270
R H A D N+LI GG ++
Sbjct: 489 TRFRHSACSLPDGNVLILGGVTE 511
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 147 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206
C + IS ++LL+GG+ W FD +T WS++++ HT R
Sbjct: 442 CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS--------LSHTRFRH 493
Query: 207 SS-------VLILFGGEDG 218
S+ VLIL G +G
Sbjct: 494 SACSLPDGNVLILGGVTEG 512
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 159 VLLVGGKTDSGSDRV--SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE 216
+ +VGG+ +R SV +D + W +P GHTV+ ++ + GG+
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPYVVYGHTVLSHMDLVYVIGGK 157
Query: 217 DGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFG 266
R+ LN + ++D K W L T RS A ++D + ++ G
Sbjct: 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTA---RSLFGATVHDGRIIVAAG 204
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSW 126
R NH + +K+ VGG++G G LD+V+ + W
Sbjct: 191 RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 153 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNC- 211
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V + RS +
Sbjct: 212 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAP---MRHHRSALGITVHQG 257
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D S TW
Sbjct: 258 KIYVLGGYDGH-TFLDSVECYDPDSDTW 284
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 152 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNC- 210
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V + RS +
Sbjct: 211 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAP---MRHHRSALGITVHQG 256
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D S TW
Sbjct: 257 KIYVLGGYDGH-TFLDSVECYDPDSDTW 283
>pdb|1AVG|I Chain I, Thrombin Inhibitor From Triatoma Pallidipennis
Length = 142
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 448 SGRKSLSEFALVDPNPISGNVSLG-KQFQNE--EEYSTAVKMEKNSEDETSFVQIMTNLE 504
SG K ++ + N NV Q N+ E+YS K N+E E F I + +
Sbjct: 45 SGSKGFTQIVEIGYNKFESNVKFQCNQVDNKNGEQYSFKCKSSDNTEFEADFTFISVSYD 104
Query: 505 HYLVLQAYINFMSQ 518
++ ++ I F SQ
Sbjct: 105 NFALVCRSITFTSQ 118
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 160 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNC- 218
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V + RS +
Sbjct: 219 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAP---MKHRRSALGITVHQG 264
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D + TW
Sbjct: 265 RIYVLGGYDGH-TFLDSVECYDPDTDTW 291
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 159 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNC- 217
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V + RS +
Sbjct: 218 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAP---MKHRRSALGITVHQG 263
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D + TW
Sbjct: 264 RIYVLGGYDGH-TFLDSVECYDPDTDTW 290
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACR 148
R AV+ + VGG G L+ + +R W + C
Sbjct: 159 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNC- 217
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208
+ G D SV +D ETE W+ V RS +
Sbjct: 218 -----------IYAAGGYDGQDQLNSVERYDVETETWTFVAPXKH---RRSALGITVHQG 263
Query: 209 VLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ + GG DG L+ + +D + TW
Sbjct: 264 RIYVLGGYDGH-TFLDSVECYDPDTDTW 290
>pdb|1YJ9|R Chain R, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
Length = 152
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 64 EVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG 109
E+ T+G + +++ I GD+P+P H + V G+K V G ++G
Sbjct: 35 EIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV-GHKSKVDGWDAG 79
>pdb|1S72|R Chain R, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|R Chain R, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|R Chain R, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|R Chain R, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|R Chain R, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJN|R Chain R, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|R Chain R, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|R Chain R, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|R Chain R, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|R Chain R, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|R Chain R, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|R Chain R, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|R Chain R, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|R Chain R, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|R Chain R, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|R Chain R, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|R Chain R, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|R Chain R, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|R Chain R, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|R Chain R, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|R Chain R, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|R Chain R, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|R Chain R, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|R Chain R, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|R Chain R, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|R Chain R, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|Q Chain Q, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|R Chain R, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|R Chain R, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|R Chain R, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|R Chain R, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|R Chain R, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|R Chain R, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 155
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 64 EVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG 109
E+ T+G + +++ I GD+P+P H + V G+K V G ++G
Sbjct: 35 EIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV-GHKSKVDGWDAG 79
>pdb|1FFK|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1JJ2|Q Chain Q, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|Q Chain Q, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|S Chain S, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|S Chain S, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|S Chain S, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|S Chain S, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|S Chain S, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|S Chain S, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|S Chain S, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|S Chain S, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|S Chain S, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|S Chain S, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|S Chain S, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|S Chain S, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|S Chain S, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|Q Chain Q, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|Q Chain Q, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|Q Chain Q, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CXC|Q Chain Q, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
Length = 154
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 64 EVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG 109
E+ T+G + +++ I GD+P+P H + V G+K V G ++G
Sbjct: 34 EIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV-GHKSKVDGWDAG 78
>pdb|1J9A|A Chain A, Oligoribonuclease
Length = 184
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 229 FDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFG 266
FD ++L W+ L TG P R +A + DKNL I
Sbjct: 5 FDKQNLIWIDLEXTGLDPEKERIIEIATIVTDKNLNILA 43
>pdb|3G4S|R Chain R, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|R Chain R, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|R Chain R, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3OW2|Q Chain Q, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 150
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 64 EVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG 109
E+ T+G + +++ I GD+P+P H + V G+K V G ++G
Sbjct: 34 EIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV-GHKSKVDGWDAG 78
>pdb|1PGX|A Chain A, The 1.66 Angstroms X-Ray Structure Of The B2
Immunoglobulin- Binding Domain Of Streptococcal Protein
G And Comparison To The Nmr Structure Of The B1 Domain
Length = 83
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 167 DSGSDRVSVWTFDTETECWSVVEAKGDIPVA 197
D+G D VWT+D T+ ++V E ++PVA
Sbjct: 49 DNGVD--GVWTYDDATKTFTVTEMVTEVPVA 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,630,804
Number of Sequences: 62578
Number of extensions: 638388
Number of successful extensions: 1411
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1383
Number of HSP's gapped (non-prelim): 46
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)