Query 009910
Match_columns 522
No_of_seqs 435 out of 3481
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 18:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 6.1E-45 1.3E-49 381.8 40.7 336 40-388 119-469 (470)
2 PLN02153 epithiospecifier prot 100.0 2.4E-43 5.2E-48 356.7 37.4 305 72-387 5-339 (341)
3 KOG4693 Uncharacterized conser 100.0 1.2E-43 2.6E-48 321.3 24.3 336 75-474 3-357 (392)
4 KOG4441 Proteins containing BT 100.0 9.3E-43 2E-47 369.6 31.6 288 24-342 265-555 (571)
5 KOG4441 Proteins containing BT 100.0 3.2E-41 6.9E-46 357.9 29.2 269 96-394 282-553 (571)
6 PLN02193 nitrile-specifier pro 100.0 6.7E-39 1.4E-43 336.2 37.5 287 91-394 113-417 (470)
7 PLN02153 epithiospecifier prot 100.0 5.1E-39 1.1E-43 325.1 32.3 293 30-334 21-340 (341)
8 PHA02713 hypothetical protein; 100.0 1.2E-38 2.6E-43 339.8 30.7 262 100-394 259-540 (557)
9 PHA02713 hypothetical protein; 100.0 1.1E-38 2.3E-43 340.1 28.4 243 72-342 280-542 (557)
10 KOG4693 Uncharacterized conser 100.0 8.5E-39 1.8E-43 289.7 20.3 275 33-320 15-313 (392)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 1.1E-36 2.4E-41 309.0 31.3 274 84-385 3-344 (346)
12 KOG0379 Kelch repeat-containin 100.0 9.3E-37 2E-41 319.1 30.6 300 81-389 53-359 (482)
13 PRK14131 N-acetylneuraminic ac 100.0 5.1E-36 1.1E-40 306.7 30.6 286 73-392 16-373 (376)
14 TIGR03548 mutarot_permut cycli 100.0 9.2E-36 2E-40 299.2 30.0 261 87-375 2-314 (323)
15 PHA03098 kelch-like protein; P 100.0 9E-36 2E-40 319.7 30.0 247 72-344 272-522 (534)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 5.5E-35 1.2E-39 296.6 28.6 264 36-331 12-344 (346)
17 PHA03098 kelch-like protein; P 100.0 1.3E-34 2.8E-39 310.8 29.1 263 99-394 251-518 (534)
18 TIGR03548 mutarot_permut cycli 100.0 1.8E-34 3.9E-39 289.9 27.3 261 36-320 8-314 (323)
19 PRK14131 N-acetylneuraminic ac 100.0 2.1E-34 4.5E-39 294.7 27.9 272 36-339 33-374 (376)
20 KOG4152 Host cell transcriptio 100.0 3.8E-34 8.2E-39 279.6 21.2 304 72-389 15-365 (830)
21 PHA02790 Kelch-like protein; P 100.0 7.3E-33 1.6E-37 291.3 28.3 212 94-341 267-478 (480)
22 KOG1230 Protein containing rep 100.0 2.5E-33 5.3E-38 268.4 20.4 248 84-342 62-349 (521)
23 KOG0379 Kelch repeat-containin 100.0 8.8E-33 1.9E-37 289.1 25.5 247 142-394 56-308 (482)
24 PHA02790 Kelch-like protein; P 100.0 2.6E-31 5.7E-36 279.5 28.1 209 152-393 267-476 (480)
25 KOG1230 Protein containing rep 100.0 1.7E-31 3.6E-36 255.8 22.9 238 41-292 78-349 (521)
26 KOG4152 Host cell transcriptio 100.0 6.9E-31 1.5E-35 256.9 20.7 286 33-333 34-363 (830)
27 COG3055 Uncharacterized protei 99.8 1.3E-17 2.8E-22 159.0 23.0 276 84-389 32-376 (381)
28 COG3055 Uncharacterized protei 99.8 3.3E-17 7.1E-22 156.2 22.3 265 36-334 41-375 (381)
29 KOG2437 Muskelin [Signal trans 99.6 2.1E-16 4.5E-21 155.7 6.8 269 123-393 238-540 (723)
30 KOG2437 Muskelin [Signal trans 99.6 6.5E-16 1.4E-20 152.2 5.0 263 71-342 236-543 (723)
31 PF03089 RAG2: Recombination a 99.2 5.9E-10 1.3E-14 103.6 16.9 207 194-414 19-274 (337)
32 PF13964 Kelch_6: Kelch motif 99.1 1.2E-10 2.7E-15 82.3 6.5 50 197-249 1-50 (50)
33 PF13964 Kelch_6: Kelch motif 99.1 2.4E-10 5.1E-15 80.9 6.2 50 146-198 1-50 (50)
34 PLN02772 guanylate kinase 98.9 5.3E-09 1.2E-13 104.5 11.4 90 194-285 21-110 (398)
35 PF13415 Kelch_3: Galactose ox 98.9 2.8E-09 6E-14 75.0 6.2 48 207-257 1-49 (49)
36 PF01344 Kelch_1: Kelch motif; 98.9 3.2E-09 6.9E-14 74.0 5.0 44 197-240 1-44 (47)
37 PF01344 Kelch_1: Kelch motif; 98.9 6.4E-09 1.4E-13 72.4 6.0 45 146-190 1-45 (47)
38 PF13415 Kelch_3: Galactose ox 98.8 6.8E-09 1.5E-13 73.0 5.9 48 156-206 1-49 (49)
39 PF13418 Kelch_4: Galactose ox 98.8 3.8E-09 8.1E-14 74.3 4.5 47 197-246 1-48 (49)
40 PF03089 RAG2: Recombination a 98.8 9.3E-07 2E-11 82.6 20.1 172 145-321 20-231 (337)
41 PLN02772 guanylate kinase 98.8 3.9E-08 8.4E-13 98.4 11.6 88 144-234 22-110 (398)
42 PF07646 Kelch_2: Kelch motif; 98.8 1.9E-08 4E-13 70.7 6.2 45 88-132 1-48 (49)
43 PF07646 Kelch_2: Kelch motif; 98.8 2E-08 4.3E-13 70.6 6.3 44 197-240 1-46 (49)
44 PF13418 Kelch_4: Galactose ox 98.7 1.8E-08 3.8E-13 70.9 4.0 47 146-195 1-48 (49)
45 PF07250 Glyoxal_oxid_N: Glyox 98.7 2.3E-06 5.1E-11 80.8 18.8 177 175-372 48-243 (243)
46 PF13854 Kelch_5: Kelch motif 98.6 9.7E-08 2.1E-12 64.5 5.5 40 85-124 1-42 (42)
47 PF13854 Kelch_5: Kelch motif 98.6 1.3E-07 2.8E-12 63.9 5.6 41 194-234 1-42 (42)
48 smart00612 Kelch Kelch domain. 98.5 1.7E-07 3.7E-12 65.0 4.6 47 209-259 1-47 (47)
49 smart00612 Kelch Kelch domain. 98.4 3.3E-07 7.2E-12 63.4 4.6 47 158-208 1-47 (47)
50 PF07250 Glyoxal_oxid_N: Glyox 98.2 8E-05 1.7E-09 70.5 17.2 148 116-293 48-208 (243)
51 TIGR01640 F_box_assoc_1 F-box 98.2 0.00085 1.8E-08 63.8 23.6 202 174-389 15-230 (230)
52 TIGR01640 F_box_assoc_1 F-box 98.1 0.0014 3.1E-08 62.3 23.9 202 114-335 14-230 (230)
53 PRK11138 outer membrane biogen 97.9 0.032 6.9E-07 57.7 30.4 255 72-390 44-315 (394)
54 PRK11138 outer membrane biogen 97.6 0.056 1.2E-06 55.9 27.0 228 90-390 112-356 (394)
55 TIGR03300 assembly_YfgL outer 97.4 0.16 3.4E-06 52.2 26.8 227 92-390 59-300 (377)
56 PF08450 SGL: SMP-30/Gluconola 97.3 0.12 2.7E-06 49.4 23.8 222 98-370 11-243 (246)
57 PF13360 PQQ_2: PQQ-like domai 97.1 0.27 5.8E-06 46.5 27.3 186 94-336 32-233 (238)
58 PRK13684 Ycf48-like protein; P 97.0 0.34 7.4E-06 48.8 24.0 244 72-374 74-323 (334)
59 TIGR03300 assembly_YfgL outer 96.9 0.67 1.5E-05 47.5 26.3 187 94-339 101-305 (377)
60 PF14870 PSII_BNR: Photosynthe 96.8 0.57 1.2E-05 46.2 24.9 258 72-395 4-269 (302)
61 PF14870 PSII_BNR: Photosynthe 96.7 0.77 1.7E-05 45.3 25.2 244 72-374 45-296 (302)
62 PF12768 Rax2: Cortical protei 96.5 0.035 7.5E-07 54.1 12.0 123 162-292 3-130 (281)
63 TIGR03866 PQQ_ABC_repeats PQQ- 96.4 1.1 2.4E-05 43.5 27.5 188 100-337 2-191 (300)
64 PF07893 DUF1668: Protein of u 96.2 0.17 3.8E-06 51.1 15.4 120 155-292 75-216 (342)
65 PF12768 Rax2: Cortical protei 96.1 0.32 6.9E-06 47.5 16.0 122 213-342 3-130 (281)
66 PF07893 DUF1668: Protein of u 96.0 0.2 4.3E-06 50.7 15.0 118 206-342 75-216 (342)
67 KOG2055 WD40 repeat protein [G 95.9 0.38 8.3E-06 48.7 15.9 193 99-334 225-418 (514)
68 KOG2055 WD40 repeat protein [G 95.9 0.52 1.1E-05 47.7 16.8 153 156-338 224-379 (514)
69 cd00216 PQQ_DH Dehydrogenases 95.8 3.3 7.1E-05 44.2 24.2 144 72-239 39-192 (488)
70 PRK04792 tolB translocation pr 95.6 3.8 8.1E-05 43.2 26.9 148 173-341 242-390 (448)
71 KOG0310 Conserved WD40 repeat- 95.5 2.3 5E-05 43.5 19.7 216 97-376 78-302 (487)
72 PF13360 PQQ_2: PQQ-like domai 95.5 2.3 5E-05 40.0 28.9 211 115-390 4-233 (238)
73 PRK13684 Ycf48-like protein; P 95.3 3.7 8.1E-05 41.3 26.3 243 71-374 32-280 (334)
74 cd00094 HX Hemopexin-like repe 94.5 3.3 7.1E-05 38.1 16.7 151 151-336 11-178 (194)
75 TIGR02800 propeller_TolB tol-p 94.5 7 0.00015 40.4 26.3 147 173-341 214-362 (417)
76 PF10282 Lactonase: Lactonase, 94.3 6.6 0.00014 39.7 24.4 275 72-394 23-331 (345)
77 PF08450 SGL: SMP-30/Gluconola 94.2 5.3 0.00012 38.0 21.2 212 156-413 11-236 (246)
78 TIGR02800 propeller_TolB tol-p 93.9 8.9 0.00019 39.6 21.2 191 171-392 168-359 (417)
79 PLN00033 photosystem II stabil 93.9 8.9 0.00019 39.5 25.8 220 72-341 118-364 (398)
80 cd00094 HX Hemopexin-like repe 93.7 5.6 0.00012 36.5 16.7 152 94-286 12-178 (194)
81 PRK11028 6-phosphogluconolacto 93.6 8.6 0.00019 38.4 26.2 240 100-389 3-260 (330)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.4 13 0.00028 40.0 24.7 218 152-391 65-337 (527)
83 PF02191 OLF: Olfactomedin-lik 93.1 8.6 0.00019 36.9 19.7 189 156-371 30-237 (250)
84 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.1 15 0.00032 39.6 23.2 129 92-239 63-198 (527)
85 PRK00178 tolB translocation pr 92.6 15 0.00031 38.4 26.2 146 173-342 223-372 (430)
86 PF13088 BNR_2: BNR repeat-lik 92.6 10 0.00022 36.6 20.0 231 72-314 28-275 (275)
87 PRK05137 tolB translocation pr 92.5 15 0.00033 38.4 27.1 187 173-390 226-415 (435)
88 PRK04922 tolB translocation pr 92.5 15 0.00033 38.3 25.4 145 173-341 228-376 (433)
89 COG1520 FOG: WD40-like repeat 92.5 14 0.0003 37.7 21.5 202 94-340 64-277 (370)
90 PF02897 Peptidase_S9_N: Proly 92.3 16 0.00034 37.9 21.8 256 98-393 134-410 (414)
91 PF08268 FBA_3: F-box associat 92.3 5 0.00011 34.0 13.2 85 256-342 3-89 (129)
92 PRK05137 tolB translocation pr 91.9 18 0.0004 37.8 22.4 188 172-390 181-369 (435)
93 PF05096 Glu_cyclase_2: Glutam 91.7 13 0.00028 35.8 19.2 159 150-339 48-209 (264)
94 PRK00178 tolB translocation pr 91.7 19 0.00041 37.5 21.9 144 224-393 223-369 (430)
95 TIGR03866 PQQ_ABC_repeats PQQ- 91.3 14 0.00031 35.5 30.5 234 99-390 43-282 (300)
96 PF08268 FBA_3: F-box associat 91.0 3 6.5E-05 35.5 10.4 85 154-240 3-88 (129)
97 KOG2321 WD40 repeat protein [G 90.6 9.5 0.00021 40.2 14.8 124 247-390 132-261 (703)
98 PRK04043 tolB translocation pr 90.3 25 0.00055 36.6 21.0 186 174-390 214-403 (419)
99 KOG0310 Conserved WD40 repeat- 90.2 6 0.00013 40.6 12.9 112 206-339 78-191 (487)
100 PRK04792 tolB translocation pr 89.8 29 0.00063 36.5 23.4 148 114-292 242-391 (448)
101 cd00200 WD40 WD40 domain, foun 89.5 18 0.00039 33.7 26.6 188 156-390 62-252 (289)
102 PF05096 Glu_cyclase_2: Glutam 89.1 7.7 0.00017 37.3 12.2 108 206-337 54-161 (264)
103 PLN00181 protein SPA1-RELATED; 88.8 48 0.001 37.7 25.1 185 157-389 545-740 (793)
104 PLN00033 photosystem II stabil 88.2 35 0.00075 35.3 28.7 264 72-394 73-363 (398)
105 PRK04922 tolB translocation pr 87.9 37 0.00081 35.4 21.9 145 224-393 228-374 (433)
106 PTZ00421 coronin; Provisional 87.5 43 0.00094 35.7 21.4 108 208-335 138-247 (493)
107 PF02191 OLF: Olfactomedin-lik 86.8 30 0.00066 33.2 18.7 149 147-316 69-237 (250)
108 cd00200 WD40 WD40 domain, foun 86.1 29 0.00062 32.3 22.3 189 156-390 20-210 (289)
109 PF03178 CPSF_A: CPSF A subuni 86.1 38 0.00083 33.6 18.8 138 157-316 42-190 (321)
110 PRK02889 tolB translocation pr 86.1 47 0.001 34.6 24.8 146 173-341 220-368 (427)
111 smart00284 OLF Olfactomedin-li 85.9 34 0.00073 32.9 20.1 191 156-370 34-241 (255)
112 PRK03629 tolB translocation pr 84.1 58 0.0013 34.0 27.0 146 173-341 223-371 (429)
113 cd00216 PQQ_DH Dehydrogenases 83.8 64 0.0014 34.3 27.8 146 172-339 255-432 (488)
114 PF10282 Lactonase: Lactonase, 83.6 52 0.0011 33.1 26.0 250 103-388 3-276 (345)
115 PTZ00421 coronin; Provisional 83.6 66 0.0014 34.3 23.3 156 157-340 138-297 (493)
116 PRK04043 tolB translocation pr 83.6 60 0.0013 33.8 23.8 191 114-341 213-408 (419)
117 TIGR03074 PQQ_membr_DH membran 83.4 86 0.0019 35.4 25.7 213 41-287 135-389 (764)
118 PLN00181 protein SPA1-RELATED; 83.4 88 0.0019 35.6 26.2 144 156-334 587-739 (793)
119 KOG2048 WD40 repeat protein [G 82.1 80 0.0017 34.2 21.8 120 253-391 387-509 (691)
120 PRK02889 tolB translocation pr 81.9 70 0.0015 33.3 20.3 190 172-392 175-365 (427)
121 PF02897 Peptidase_S9_N: Proly 80.3 75 0.0016 32.8 18.3 206 156-387 134-357 (414)
122 COG4257 Vgb Streptogramin lyas 78.9 65 0.0014 31.2 19.7 243 115-415 84-330 (353)
123 KOG0316 Conserved WD40 repeat- 76.6 69 0.0015 30.2 13.4 173 205-415 68-249 (307)
124 PRK03629 tolB translocation pr 75.0 1.1E+02 0.0024 31.9 21.9 191 171-393 177-369 (429)
125 PF12217 End_beta_propel: Cata 74.9 81 0.0017 30.2 16.7 182 72-269 113-334 (367)
126 KOG0281 Beta-TrCP (transducin 74.0 64 0.0014 32.1 12.0 226 93-390 201-431 (499)
127 KOG0315 G-protein beta subunit 74.0 84 0.0018 30.0 20.2 215 156-413 51-279 (311)
128 KOG1036 Mitotic spindle checkp 73.0 98 0.0021 30.3 15.0 130 174-336 36-166 (323)
129 COG4946 Uncharacterized protei 70.9 1.4E+02 0.003 31.2 22.3 196 95-341 232-439 (668)
130 COG4257 Vgb Streptogramin lyas 70.9 1.1E+02 0.0023 29.8 14.8 113 155-292 198-314 (353)
131 PRK01742 tolB translocation pr 70.4 1.4E+02 0.0031 31.0 22.4 141 173-341 228-369 (429)
132 TIGR02658 TTQ_MADH_Hv methylam 70.2 1.3E+02 0.0028 30.5 29.9 259 99-391 13-334 (352)
133 PF03178 CPSF_A: CPSF A subuni 69.5 1.2E+02 0.0027 30.0 17.2 130 208-359 42-181 (321)
134 KOG0646 WD40 repeat protein [G 69.4 1.4E+02 0.0031 30.9 13.6 28 307-339 286-313 (476)
135 KOG0649 WD40 repeat protein [G 69.1 1.1E+02 0.0023 29.1 16.0 139 124-291 99-243 (325)
136 KOG4378 Nuclear protein COP1 [ 68.7 88 0.0019 32.7 12.1 91 277-390 189-283 (673)
137 PRK10115 protease 2; Provision 68.3 2E+02 0.0044 32.1 26.7 210 98-341 137-354 (686)
138 COG4880 Secreted protein conta 67.9 1.1E+02 0.0025 31.4 12.5 78 150-235 380-460 (603)
139 PF06433 Me-amine-dh_H: Methyl 66.2 1.5E+02 0.0033 29.8 15.4 72 309-392 249-325 (342)
140 PF12217 End_beta_propel: Cata 65.9 1.3E+02 0.0028 28.9 24.0 269 94-374 21-334 (367)
141 PLN03215 ascorbic acid mannose 65.3 1.7E+02 0.0036 30.0 14.1 99 182-294 189-305 (373)
142 KOG2048 WD40 repeat protein [G 64.6 2.2E+02 0.0047 31.1 21.9 152 206-388 392-549 (691)
143 KOG0649 WD40 repeat protein [G 62.0 1.5E+02 0.0032 28.3 15.4 137 183-341 99-243 (325)
144 PLN02919 haloacid dehalogenase 62.0 3.3E+02 0.0071 32.3 26.9 218 92-336 627-891 (1057)
145 KOG0289 mRNA splicing factor [ 61.5 2E+02 0.0044 29.6 14.2 93 156-267 399-494 (506)
146 COG1520 FOG: WD40-like repeat 61.4 1.9E+02 0.0041 29.3 19.0 200 98-332 111-319 (370)
147 TIGR02658 TTQ_MADH_Hv methylam 60.3 2E+02 0.0043 29.2 25.4 121 157-289 13-142 (352)
148 PF02239 Cytochrom_D1: Cytochr 58.0 2.2E+02 0.0048 29.0 17.1 247 98-390 48-305 (369)
149 PRK11028 6-phosphogluconolacto 57.6 2E+02 0.0044 28.4 30.5 240 98-387 46-304 (330)
150 PTZ00420 coronin; Provisional 57.1 2.9E+02 0.0063 30.1 24.0 153 157-341 138-301 (568)
151 COG3386 Gluconolactonase [Carb 56.9 2.1E+02 0.0045 28.4 24.9 178 175-374 87-277 (307)
152 PF07433 DUF1513: Protein of u 55.6 2.2E+02 0.0047 28.2 13.0 118 246-376 2-123 (305)
153 KOG2321 WD40 repeat protein [G 55.5 1.2E+02 0.0027 32.3 10.6 74 196-286 132-208 (703)
154 PF13088 BNR_2: BNR repeat-lik 54.1 2E+02 0.0044 27.4 20.0 232 123-369 29-275 (275)
155 PLN02919 haloacid dehalogenase 53.3 4.5E+02 0.0098 31.1 33.4 260 98-390 579-891 (1057)
156 KOG0646 WD40 repeat protein [G 52.6 2.9E+02 0.0063 28.7 14.5 59 149-219 84-146 (476)
157 PF09910 DUF2139: Uncharacteri 50.7 2.6E+02 0.0056 27.6 21.7 141 172-333 77-230 (339)
158 PF15525 DUF4652: Domain of un 50.6 2E+02 0.0043 26.2 12.5 76 215-293 79-158 (200)
159 KOG2111 Uncharacterized conser 50.4 2.7E+02 0.0057 27.6 15.6 150 156-336 58-215 (346)
160 KOG0281 Beta-TrCP (transducin 49.9 1.3E+02 0.0029 29.9 9.3 89 225-334 341-429 (499)
161 KOG3545 Olfactomedin and relat 49.9 2.4E+02 0.0051 26.9 16.2 213 16-265 11-235 (249)
162 COG4447 Uncharacterized protei 48.7 2.7E+02 0.0058 27.2 13.0 142 148-318 46-190 (339)
163 COG4946 Uncharacterized protei 48.5 3.5E+02 0.0075 28.4 22.7 239 92-390 175-434 (668)
164 PRK01742 tolB translocation pr 48.0 3.4E+02 0.0074 28.2 22.2 97 173-291 272-369 (429)
165 KOG0266 WD40 repeat-containing 46.9 3.7E+02 0.008 28.3 19.3 183 174-390 226-412 (456)
166 PF15525 DUF4652: Domain of un 46.1 2.3E+02 0.0051 25.8 11.1 72 111-190 85-157 (200)
167 KOG0296 Angio-associated migra 44.9 3.4E+02 0.0075 27.4 18.4 147 98-286 75-223 (399)
168 COG4447 Uncharacterized protei 44.4 3.1E+02 0.0068 26.7 12.7 262 40-373 53-323 (339)
169 KOG1036 Mitotic spindle checkp 42.9 3.4E+02 0.0074 26.7 14.0 105 94-234 60-165 (323)
170 PLN03215 ascorbic acid mannose 40.2 4.2E+02 0.0092 27.1 15.1 100 233-345 189-306 (373)
171 COG0823 TolB Periplasmic compo 39.6 4.6E+02 0.01 27.3 13.6 151 173-343 218-369 (425)
172 KOG3881 Uncharacterized conser 39.3 4.3E+02 0.0094 26.9 11.8 97 172-284 225-321 (412)
173 PF02239 Cytochrom_D1: Cytochr 37.9 4.6E+02 0.0099 26.7 16.6 185 113-340 15-209 (369)
174 PRK15365 type III secretion sy 37.8 22 0.00048 28.1 1.7 32 488-519 10-42 (107)
175 PF09910 DUF2139: Uncharacteri 37.6 4.1E+02 0.009 26.2 19.9 121 90-236 38-185 (339)
176 TIGR03074 PQQ_membr_DH membran 37.3 6.7E+02 0.014 28.5 20.9 32 201-239 188-221 (764)
177 PTZ00420 coronin; Provisional 35.1 6.3E+02 0.014 27.5 22.9 110 260-388 138-249 (568)
178 KOG0289 mRNA splicing factor [ 34.5 5.5E+02 0.012 26.7 13.0 120 200-345 350-474 (506)
179 PF14583 Pectate_lyase22: Olig 32.0 5.8E+02 0.013 26.2 19.4 110 225-342 217-337 (386)
180 KOG0263 Transcription initiati 31.2 4.1E+02 0.0089 29.4 10.3 104 208-334 546-650 (707)
181 COG2706 3-carboxymuconate cycl 31.1 5.6E+02 0.012 25.8 25.8 152 223-391 166-325 (346)
182 PF13570 PQQ_3: PQQ-like domai 30.3 1.3E+02 0.0027 19.3 4.2 25 304-334 16-40 (40)
183 KOG2110 Uncharacterized conser 29.6 4.6E+02 0.0099 26.6 9.5 107 207-336 55-164 (391)
184 PRK10115 protease 2; Provision 29.5 8.4E+02 0.018 27.3 20.6 168 156-342 137-311 (686)
185 KOG0306 WD40-repeat-containing 27.9 9E+02 0.019 27.1 12.1 100 117-234 339-444 (888)
186 KOG1332 Vesicle coat complex C 25.6 4.9E+02 0.011 24.9 8.5 104 160-291 178-295 (299)
187 PF07734 FBA_1: F-box associat 25.5 4.6E+02 0.0099 22.9 13.7 64 276-344 22-94 (164)
188 KOG0296 Angio-associated migra 25.2 7.3E+02 0.016 25.2 16.1 145 156-336 75-223 (399)
189 KOG0318 WD40 repeat stress pro 24.4 8.9E+02 0.019 25.9 15.5 159 144-333 440-602 (603)
190 PF08950 DUF1861: Protein of u 24.3 2.6E+02 0.0057 27.1 6.7 60 205-268 34-95 (298)
191 PRK01029 tolB translocation pr 24.0 8.3E+02 0.018 25.4 21.2 212 115-354 212-424 (428)
192 KOG0270 WD40 repeat-containing 23.5 8.5E+02 0.018 25.3 11.1 94 175-284 354-450 (463)
193 KOG1408 WD40 repeat protein [F 22.9 9.8E+02 0.021 26.7 11.1 37 348-390 456-492 (1080)
194 cd00126 PAH Pancreatic Hormone 22.3 68 0.0015 20.6 1.6 13 506-518 21-33 (36)
195 KOG0282 mRNA splicing factor [ 21.9 3.4E+02 0.0074 28.4 7.3 61 262-335 272-332 (503)
196 KOG0308 Conserved WD40 repeat- 21.7 3.2E+02 0.007 29.7 7.4 71 309-390 129-204 (735)
197 PF03022 MRJP: Major royal jel 21.5 7.6E+02 0.017 24.1 10.7 82 309-394 11-104 (287)
198 PF06433 Me-amine-dh_H: Methyl 21.5 8.5E+02 0.018 24.6 17.8 116 99-238 3-132 (342)
199 KOG0266 WD40 repeat-containing 21.4 9.5E+02 0.021 25.1 17.8 93 225-336 226-321 (456)
200 PF05262 Borrelia_P83: Borreli 21.0 6.3E+02 0.014 26.9 9.4 87 168-265 370-456 (489)
201 KOG0265 U5 snRNP-specific prot 20.6 8.3E+02 0.018 24.1 12.1 144 207-390 58-207 (338)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.1e-45 Score=381.76 Aligned_cols=336 Identities=19% Similarity=0.286 Sum_probs=266.3
Q ss_pred CCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCC--CCcccEE
Q 009910 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN--GLLDDVQ 117 (522)
Q Consensus 40 ~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~--~~~~~v~ 117 (522)
.+.+|+.|+|+..+....... |..........++|..++..+.+|.||.+|++++++++|||+||.... ...+++|
T Consensus 119 ~~~~ivgf~G~~~~~~~~ig~--y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~ 196 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHSLGA--YISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLY 196 (470)
T ss_pred cCCeEEEEeccCCCcEEeeEE--EEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEE
Confidence 367799999977654222222 322111112348999998666789999999999999999999997532 2357899
Q ss_pred EEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCC
Q 009910 118 VLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVA 197 (522)
Q Consensus 118 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~ 197 (522)
+||+.+++|+.++.+.. .|.++|.+|++++++++||||||... ....+++|+||+.+++|+.+++.+..|.+
T Consensus 197 ~yD~~~~~W~~~~~~g~-------~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 197 VFDLETRTWSISPATGD-------VPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred EEECCCCEEEeCCCCCC-------CCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 99999999998765421 12224678999999999999999864 34578999999999999999864445899
Q ss_pred CcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcE
Q 009910 198 RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (522)
Q Consensus 198 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v 277 (522)
|..|+++.++++||||||.+.. ..++++++||+.+++|+.++..+.+|.+|..|++++++++ ||++||.+.. .++++
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk-iyviGG~~g~-~~~dv 345 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK-VWVVYGFNGC-EVDDV 345 (470)
T ss_pred ccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc-EEEEECCCCC-ccCce
Confidence 9999999999999999999765 4678999999999999999866668889999999999988 9999998654 46899
Q ss_pred EEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCC---------CCCcCeEEEEECCCCceEEeccCCC--C
Q 009910 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSPS--S 346 (522)
Q Consensus 278 ~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~p~--~ 346 (522)
++||+++++|+++...+..|.+|..|+++.++++|||+||... ....+++|+||+.+++|+.+...+. .
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~ 425 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEE 425 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCC
Confidence 9999999999999887777899999999999999999999753 1245789999999999999875432 3
Q ss_pred CCCCCCCcEEEEEeeCCccEEEEEcCCCC--CCCCcEEEEEccc
Q 009910 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 388 (522)
Q Consensus 347 ~~~~r~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~y~~~~ 388 (522)
.|.+|..++++.....+++.|++|||... ...+|+|+|++++
T Consensus 426 ~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 426 TPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 45666666544333334566999999964 4489999998765
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.4e-43 Score=356.71 Aligned_cols=305 Identities=21% Similarity=0.367 Sum_probs=243.6
Q ss_pred CCCceEEeeec-CCCCCCccceEEEEECCEEEEEcCcCCC--CCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCcc
Q 009910 72 NSENWMVLSIA-GDKPIPRFNHAAAVIGNKMIVVGGESGN--GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR 148 (522)
Q Consensus 72 ~~~~W~~l~~~-~~~p~~R~~~~~~~~~~~iyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~ 148 (522)
....|.++... +.+|.||..|++++++++|||+||.... ...+++++||+.+++|+.++++.. .+.+.+.
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-------~p~~~~~ 77 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD-------VPRISCL 77 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC-------CCCCccC
Confidence 56779999753 3579999999999999999999998532 345899999999999999887421 1122345
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec--CCCCCCCcceEEEEECCEEEEEcccCCCC-----C
Q 009910 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKR-----R 221 (522)
Q Consensus 149 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----~ 221 (522)
+|++++++++||+|||.... ...+++++||+.+++|+.+++. ...|.+|..|++++.+++||||||.+..+ .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred ceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCc
Confidence 79999999999999998643 3567899999999999998742 12388999999999999999999986432 2
Q ss_pred ccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCC--------CCCCcEEEEEcCCCcEEEeeeC
Q 009910 222 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS--------KTLNDLYSLDFETMIWTRIKIR 293 (522)
Q Consensus 222 ~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~--------~~~~~v~~yd~~~~~W~~~~~~ 293 (522)
.++++++||+++++|+.++..+..|.+|.+|++++++++ |||+||.... ...+++++||+++++|+++...
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 457899999999999999865556789999999999998 9999986421 2367899999999999999887
Q ss_pred CCCCCCccceEEEEECCEEEEEcccCC---------CCCcCeEEEEECCCCceEEeccCCC-CCCCCCCCcEEEEEeeCC
Q 009910 294 GFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSPS-SSVTSNKGFTLVLVQHKE 363 (522)
Q Consensus 294 ~~~p~~r~~~~~~~~~~~iyi~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~p~-~~~~~r~~~~~~~~~~~~ 363 (522)
+..|.+|..|++++++++|||+||... ....+++|+||+.+++|+.+..... +.|..+..++++.+. +
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~--~ 313 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVY--G 313 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccC--C
Confidence 777999999999999999999999742 2345799999999999999864211 233455555666665 3
Q ss_pred ccEEEEEcCCCC--CCCCcEEEEEcc
Q 009910 364 KDFLVAFGGIKK--EPSNQVEVLSIE 387 (522)
Q Consensus 364 ~~~l~v~GG~~~--~~~~~v~~y~~~ 387 (522)
++.|||+||... +..+++++|+..
T Consensus 314 ~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 314 KNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cceEEEEcCcCCCCccccceEEEecc
Confidence 467999999965 348999999764
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=321.25 Aligned_cols=336 Identities=26% Similarity=0.430 Sum_probs=278.0
Q ss_pred ceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCC-----cccEEEEEcCCCcEEEccccc--ccCCCCCCCCCCCc
Q 009910 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGL-----LDDVQVLNFDRFSWTAASSKL--YLSPSSLPLKIPAC 147 (522)
Q Consensus 75 ~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~-----~~~v~~yd~~~~~W~~~~~~~--~~~~~~~~~~~~~r 147 (522)
.|+.-- +--+.|.+|+++.++..||-|||+..... .-||.+++..+.+|+.+++.. ...+..-|.-+-.|
T Consensus 3 ~WTVHL---eGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHL---EGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEe---cCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 466655 44567999999999999999999754432 348999999999999999843 23334444555678
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC-CCccCcE
Q 009910 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-RRKLNDL 226 (522)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~v 226 (522)
++|+.+.+++++||.||.++.....+.++.||+++++|.+....+-+|.+|.+|+++++++.+|||||+... ....+++
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc
Confidence 999999999999999999988888899999999999999998888999999999999999999999999654 3467899
Q ss_pred EEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCC---------CCCCCcEEEEEcCCCcEEEeeeCCCCC
Q 009910 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKIRGFHP 297 (522)
Q Consensus 227 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~~~~p 297 (522)
+.+|..|.+|+.+...|..|.-|..|+++++++. +|||||... ..+.+.+..+|+.++.|.+.+..+..|
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~-MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P 238 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGM-MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP 238 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccce-EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC
Confidence 9999999999999999999999999999999977 999999853 235577999999999999998888889
Q ss_pred CCccceEEEEECCEEEEEcccCC--CCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC
Q 009910 298 SPRAGCCGVLCGTKWYIAGGGSR--KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 375 (522)
Q Consensus 298 ~~r~~~~~~~~~~~iyi~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~ 375 (522)
.+|..|++.+.++++|+|||+.+ +.-.+++|+|||.+..|..+.. ....|.+|+..++++++ +++|+|||...
T Consensus 239 ~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~g----~kv~LFGGTsP 313 (392)
T KOG4693|consen 239 GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVSG----GKVYLFGGTSP 313 (392)
T ss_pred CcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec-cCCCCCcccceeEEEEC----CEEEEecCCCC
Confidence 99999999999999999999975 4567899999999999999876 45667888888998887 77999999753
Q ss_pred CCCCcEEEEEcccCCccccccCCCCCCCCceEEeecCCCCcccccccCCCCCCCCcchhhhhhhHHhHhhcCCCCccccc
Q 009910 376 EPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSE 455 (522)
Q Consensus 376 ~~~~~v~~y~~~~~~w~~~~~~~~~~~~~~~~~fgg~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~l~~ 455 (522)
.+ ++..+..... |- + +++++..+|+
T Consensus 314 ~~-----------------~~~~Spt~~~------G~------------------~--------------~~~~LiD~SD 338 (392)
T KOG4693|consen 314 LP-----------------CHPLSPTNYN------GM------------------I--------------SPSGLIDLSD 338 (392)
T ss_pred CC-----------------CCCCCccccC------CC------------------C--------------Cccccccccc
Confidence 22 1111110000 00 0 2366899999
Q ss_pred ccccCCCCCCCCccccccc
Q 009910 456 FALVDPNPISGNVSLGKQF 474 (522)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (522)
.|++|..|+||++++...+
T Consensus 339 LHvLDF~PsLKTLa~~~Vl 357 (392)
T KOG4693|consen 339 LHVLDFAPSLKTLAMQSVL 357 (392)
T ss_pred ceeeecChhHHHHHHHHHH
Confidence 9999999999999876644
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=9.3e-43 Score=369.59 Aligned_cols=288 Identities=24% Similarity=0.358 Sum_probs=256.6
Q ss_pred ccccCCCCCCCCccCC--CCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEE
Q 009910 24 QAIRSPIRPPKRNSNP--NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKM 101 (522)
Q Consensus 24 ~~~~~p~~~~~r~~~~--~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~i 101 (522)
.+..++..+.+|+..+ ..+.|+++||...........+.|++ .++.|..++ ++|.+|..+++++++|+|
T Consensus 265 ~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~------~~~~w~~~a---~m~~~r~~~~~~~~~~~l 335 (571)
T KOG4441|consen 265 LPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDP------KTNEWSSLA---PMPSPRCRVGVAVLNGKL 335 (571)
T ss_pred CcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecC------CcCcEeecC---CCCcccccccEEEECCEE
Confidence 3344444555565555 35669999997764445555566777 999999998 899999999999999999
Q ss_pred EEEcCcC-CCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEEC
Q 009910 102 IVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 180 (522)
Q Consensus 102 yv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 180 (522)
|++||++ +...++++++||+.+++|+.+++| ..+|..++++++++.||++||.++ ....+++++||+
T Consensus 336 Yv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-----------~~~R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp 403 (571)
T KOG4441|consen 336 YVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-----------NTKRSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDP 403 (571)
T ss_pred EEEccccCCCcccceEEEecCCCCceeccCCc-----------cCccccceeEEECCEEEEEecccc-ccccccEEEecC
Confidence 9999999 677899999999999999999986 347789999999999999999984 556789999999
Q ss_pred CCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCc
Q 009910 181 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 260 (522)
Q Consensus 181 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~ 260 (522)
.+++|+.+++ |+.+|++|++++++++||++||.+.....++++++|||.+++|+.++ +|+.+|.++++++++++
T Consensus 404 ~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~ 477 (571)
T KOG4441|consen 404 VTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGK 477 (571)
T ss_pred CCCcccccCC---CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECCE
Confidence 9999999985 99999999999999999999999888668999999999999999998 99999999999999999
Q ss_pred EEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 009910 261 NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (522)
Q Consensus 261 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (522)
||++||+++...+..+++|||++++|+.+.++ +.+|..++++++++++|++||.++...++.+.+|||.+++|+..
T Consensus 478 -iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 478 -IYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred -EEEECCccCCCccceEEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 99999998877788899999999999999776 88999999999999999999999999999999999999999997
Q ss_pred cc
Q 009910 341 IT 342 (522)
Q Consensus 341 ~~ 342 (522)
..
T Consensus 554 ~~ 555 (571)
T KOG4441|consen 554 TE 555 (571)
T ss_pred CC
Confidence 74
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.2e-41 Score=357.88 Aligned_cols=269 Identities=25% Similarity=0.365 Sum_probs=243.7
Q ss_pred EECCEEEEEcCcCC-CCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCcee
Q 009910 96 VIGNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 96 ~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (522)
...+.||++||... ....+.+..||+.++.|..++++ +.+|..+++++++++||++||++......++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-----------~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-----------PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-----------CcccccccEEEECCEEEEEccccCCCcccce
Confidence 45588999999986 56788999999999999999985 2456689999999999999999854556889
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
+|+||+.+++|..+++ |+.+|..+++++++|.||++||.++. ..++++++|||.+++|+.+. +++.+|++|++
T Consensus 351 ve~YD~~~~~W~~~a~---M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv 423 (571)
T KOG4441|consen 351 VERYDPRTNQWTPVAP---MNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVA---PMLTRRSGHGV 423 (571)
T ss_pred EEEecCCCCceeccCC---ccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccC---CCCcceeeeEE
Confidence 9999999999999985 99999999999999999999999976 67999999999999999997 89999999999
Q ss_pred EEECCcEEEEEcCCCCCC-CCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 009910 255 ALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
++++++ ||++||.+... .++.+++|||.+++|+.++++ +.+|.++++++++++||++||.++......+++|||.
T Consensus 424 ~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 424 AVLGGK-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EEECCE-EEEEcCcCCCccccceEEEEcCCCCceeecCCc---ccccccceEEEECCEEEEECCccCCCccceEEEEcCC
Confidence 999999 99999998776 899999999999999999888 8999999999999999999999986667789999999
Q ss_pred CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 009910 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (522)
Q Consensus 334 ~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~y~~~~~~w~~~ 394 (522)
+++|+.++ + +..+|..+++++++ +.||++||+++.. .+.|++|||.+++|...
T Consensus 500 ~~~W~~v~--~--m~~~rs~~g~~~~~----~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 500 TNQWTMVA--P--MTSPRSAVGVVVLG----GKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred CCceeEcc--c--CccccccccEEEEC----CEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 99999986 3 33678888888887 7899999987765 89999999999999886
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.7e-39 Score=336.17 Aligned_cols=287 Identities=24% Similarity=0.329 Sum_probs=234.5
Q ss_pred ceEEEEECCEEEEEcCcCCCCCcccE--EEEEcCC----CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcc
Q 009910 91 NHAAAVIGNKMIVVGGESGNGLLDDV--QVLNFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGG 164 (522)
Q Consensus 91 ~~~~~~~~~~iyv~GG~~~~~~~~~v--~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG 164 (522)
+...+..+++|+.|+|..... ++.+ +.+++.+ ++|..+.++. ..+.+|.+|++++++++|||+||
T Consensus 113 g~~f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~--------~~P~pR~~h~~~~~~~~iyv~GG 183 (470)
T PLN02193 113 GVKFVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKG--------EGPGLRCSHGIAQVGNKIYSFGG 183 (470)
T ss_pred CCEEEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCC--------CCCCCccccEEEEECCEEEEECC
Confidence 334444689999999976543 5544 4446644 7999988642 12447889999999999999999
Q ss_pred cCCCCC-CceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC
Q 009910 165 KTDSGS-DRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (522)
Q Consensus 165 ~~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 242 (522)
...... ..+++|+||+.+++|+.+++.+++|. +|.+|+++.++++||||||.+.. ..++++|+||+.+++|+++.+.
T Consensus 184 ~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~ 262 (470)
T PLN02193 184 EFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPV 262 (470)
T ss_pred cCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcC
Confidence 864333 34679999999999998876555665 46789999999999999998765 4689999999999999999855
Q ss_pred CCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (522)
Q Consensus 243 g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~ 322 (522)
+..|.+|+.|++++++++ ||||||.+....++++++||+.+++|+.++..+..|.+|.+|++++++++||++||.++.
T Consensus 263 ~~~P~~R~~h~~~~~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~- 340 (470)
T PLN02193 263 EEGPTPRSFHSMAADEEN-VYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC- 340 (470)
T ss_pred CCCCCCccceEEEEECCE-EEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-
Confidence 455899999999999888 999999987777899999999999999998765568899999999999999999998654
Q ss_pred CcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC----------CCCCcEEEEEcccCCcc
Q 009910 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESS 392 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~y~~~~~~w~ 392 (522)
..+++++||+.+++|+.+.... ..|.+|..|++++++ ++|||+||... ...+++++||+.+++|+
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g-~~P~~R~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFG-VRPSERSVFASAAVG----KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ccCceEEEECCCCEEEEeccCC-CCCCCcceeEEEEEC----CEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 4688999999999999987532 345788889998886 67999999753 12579999999999998
Q ss_pred cc
Q 009910 393 MG 394 (522)
Q Consensus 393 ~~ 394 (522)
..
T Consensus 416 ~~ 417 (470)
T PLN02193 416 RL 417 (470)
T ss_pred Ec
Confidence 54
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.1e-39 Score=325.11 Aligned_cols=293 Identities=18% Similarity=0.256 Sum_probs=223.8
Q ss_pred CCCCCCccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCC-ccceEEEEECCEEEEEcCcC
Q 009910 30 IRPPKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIP-RFNHAAAVIGNKMIVVGGES 108 (522)
Q Consensus 30 ~~~~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~ 108 (522)
.++..++.+..++.||++||...... ...++++.++. .+++|+.++..+..|.. +.+|++++++++||||||..
T Consensus 21 ~pR~~h~~~~~~~~iyv~GG~~~~~~-~~~~~~~~yd~----~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 95 (341)
T PLN02153 21 GPRCSHGIAVVGDKLYSFGGELKPNE-HIDKDLYVFDF----NTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRD 95 (341)
T ss_pred CCCCcceEEEECCEEEEECCccCCCC-ceeCcEEEEEC----CCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCC
Confidence 33344466666889999999643211 12223333333 88999998744333433 45789999999999999987
Q ss_pred CCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC-----CCceeEEEEECCCC
Q 009910 109 GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-----SDRVSVWTFDTETE 183 (522)
Q Consensus 109 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~v~~yd~~t~ 183 (522)
....++++++||+.+++|+.++++... ..+.+|..|++++.+++|||+||..... ...+++++||++++
T Consensus 96 ~~~~~~~v~~yd~~t~~W~~~~~~~~~------~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~ 169 (341)
T PLN02153 96 EKREFSDFYSYDTVKNEWTFLTKLDEE------GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG 169 (341)
T ss_pred CCCccCcEEEEECCCCEEEEeccCCCC------CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence 777789999999999999998764210 1245778999999999999999986432 13568999999999
Q ss_pred cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC-------CCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEE
Q 009910 184 CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (522)
Q Consensus 184 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 256 (522)
+|+.+++.+..|.+|.+|++++++++|||+||.... ...++++++||+.+++|+++...+.+|.+|..|++++
T Consensus 170 ~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~ 249 (341)
T PLN02153 170 KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV 249 (341)
T ss_pred eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE
Confidence 999998655566899999999999999999997521 1236889999999999999987777899999999999
Q ss_pred ECCcEEEEEcCCC---------CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCc--cceEEEEE--CCEEEEEcccCC-CC
Q 009910 257 YDDKNLLIFGGSS---------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPR--AGCCGVLC--GTKWYIAGGGSR-KK 322 (522)
Q Consensus 257 ~~~~~lyv~GG~~---------~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r--~~~~~~~~--~~~iyi~GG~~~-~~ 322 (522)
++++ ||||||.. .....+++|+||+++++|+.+...+.+|.|| ..++++.+ +++|||+||.+. ..
T Consensus 250 ~~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~ 328 (341)
T PLN02153 250 VGKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNE 328 (341)
T ss_pred ECCE-EEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCc
Confidence 9988 99999973 2335679999999999999997654444454 43444443 458999999975 46
Q ss_pred CcCeEEEEECCC
Q 009910 323 RHAETLIFDILK 334 (522)
Q Consensus 323 ~~~~v~~yd~~~ 334 (522)
...++|+|+..+
T Consensus 329 ~~~~~~~~~~~~ 340 (341)
T PLN02153 329 RTDDLYFYAVNS 340 (341)
T ss_pred cccceEEEeccc
Confidence 789999998643
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=339.78 Aligned_cols=262 Identities=11% Similarity=0.151 Sum_probs=221.5
Q ss_pred EEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEE
Q 009910 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (522)
Q Consensus 100 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 179 (522)
.|++.||... .....+++||+.+++|..++++ + .++..+++++++++||++||........+++++||
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~m----------p-~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd 326 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTI----------P-NHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCCC----------C-ccccceEEEEECCEEEEEcCCCCCCCccceEEEEE
Confidence 3555555321 2235789999999999999874 3 34567899999999999999864444578899999
Q ss_pred CCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECC
Q 009910 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (522)
Q Consensus 180 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 259 (522)
+.+++|..+++ ||.+|..+++++++++||++||.++. ..++++++|||.+++|+.++ ++|.+|..++++++++
T Consensus 327 ~~~n~W~~~~~---m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 327 IENKIHVELPP---MIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQ 399 (557)
T ss_pred CCCCeEeeCCC---CcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECC---CCCcccccccEEEECC
Confidence 99999999885 99999999999999999999998755 45789999999999999998 8999999999999998
Q ss_pred cEEEEEcCCCCC------------------CCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCC
Q 009910 260 KNLLIFGGSSKS------------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (522)
Q Consensus 260 ~~lyv~GG~~~~------------------~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~ 321 (522)
+ ||++||.+.. ..++.+++|||++++|+.++++ +.+|..+++++++++||++||.++.
T Consensus 400 ~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~ 475 (557)
T PHA02713 400 Y-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE 475 (557)
T ss_pred E-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC
Confidence 8 9999998642 1357899999999999999876 8899999999999999999998754
Q ss_pred CCc-CeEEEEECCC-CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCcccc
Q 009910 322 KRH-AETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (522)
Q Consensus 322 ~~~-~~v~~yd~~~-~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w~~~ 394 (522)
... ..+++|||.+ ++|+.++. ++.+|..+++++++ ++||++||.++. ..+++||+.+++|+..
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~~----m~~~r~~~~~~~~~----~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELITT----TESRLSALHTILHD----NTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CccceeEEEecCCCCCCeeEccc----cCcccccceeEEEC----CEEEEEeeecce--eehhhcCcccccccch
Confidence 333 4579999999 89999883 34788899999997 789999998763 4799999999999886
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=340.12 Aligned_cols=243 Identities=16% Similarity=0.226 Sum_probs=213.6
Q ss_pred CCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcC-CCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (522)
.+++|..++ ++|.+|.++++++++++|||+||.. .....+++++||+.+++|..+++| +.+|..+
T Consensus 280 ~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-----------~~~R~~~ 345 (557)
T PHA02713 280 NTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-----------IKNRCRF 345 (557)
T ss_pred CCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-----------cchhhce
Confidence 899999998 8999999999999999999999975 334578999999999999999885 3467889
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCC----------
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---------- 220 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------- 220 (522)
++++++++||++||.+. ....+++++||+.+++|+.+++ ||.+|..+++++++++||++||.+...
T Consensus 346 ~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred eEEEECCEEEEECCcCC-CCCCceEEEEECCCCeEEECCC---CCcccccccEEEECCEEEEEeCCCccccccccccccc
Confidence 99999999999999864 3346789999999999999985 999999999999999999999986431
Q ss_pred -------CccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCC-CCCcEEEEEcCC-CcEEEee
Q 009910 221 -------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFET-MIWTRIK 291 (522)
Q Consensus 221 -------~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~-~~W~~~~ 291 (522)
..++.+++|||.+++|+.++ +++.+|..+++++++++ |||+||.+... ..+.+++|||++ ++|+.++
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 13678999999999999998 89999999999999998 99999986433 335689999999 8999998
Q ss_pred eCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 292 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 292 ~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
++ |.+|..+++++++++||++||.++. ..+.+||+.+++|+.+..
T Consensus 498 ~m---~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 498 TT---ESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred cc---CcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhh
Confidence 76 8999999999999999999998763 368899999999999873
No 10
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=8.5e-39 Score=289.73 Aligned_cols=275 Identities=24% Similarity=0.421 Sum_probs=233.4
Q ss_pred CCCccCCCCCceEeeCCCCCCCccccc--ccCcccCCCCCCCCCceEEeeecC----------CCCCCccceEEEEECCE
Q 009910 33 PKRNSNPNSECVAPSSNHADDRDCECT--IAGPEVSNGTSGNSENWMVLSIAG----------DKPIPRFNHAAAVIGNK 100 (522)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~~~~~--~~~~~~~~~~~~~~~~W~~l~~~~----------~~p~~R~~~~~~~~~~~ 100 (522)
-.|+++.++..||.|||.-.+..+... .++..++. .+-+|.+++..- ..|..|++|+.+.++++
T Consensus 15 VNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa----~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 15 VNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNA----ENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred ccceeeeecceEEecCCcccccccccCCcceeEEeec----cceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 456999999999999995443322221 22222333 888999986511 23556999999999999
Q ss_pred EEEEcCcCC-CCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCC-CceeEEEE
Q 009910 101 MIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS-DRVSVWTF 178 (522)
Q Consensus 101 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~v~~y 178 (522)
+||.||.++ .+..|-++.||++++.|.+....+ .-+++|.+|++|++++.+|||||+....+ ..++++.+
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G--------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG--------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceee--------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 999999876 567899999999999999887754 34668899999999999999999976443 46789999
Q ss_pred ECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC--------CCccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 179 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
|+.|.+|+.+..+++.|.-|..|+++++++.+|||||+... .++.+.+..+|+.|..|+..+..+-.|..|.
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 99999999999999999999999999999999999999643 2356778899999999999988778999999
Q ss_pred ceEEEEECCcEEEEEcCCCC--CCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCC
Q 009910 251 NHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~ 320 (522)
.|++.+++++ +|+|||+++ ..-++++|.|||.+..|..+...|..|.+|..+++++.++++|+|||.+.
T Consensus 243 SHS~fvYng~-~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 243 SHSTFVYNGK-MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccceEEEcce-EEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999 999999986 45689999999999999999999999999999999999999999999753
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.1e-36 Score=309.05 Aligned_cols=274 Identities=17% Similarity=0.217 Sum_probs=212.6
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEc--CCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 009910 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNF--DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (522)
Q Consensus 84 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv 161 (522)
++|.+|..+++++++++|||+||... +++++||+ .+++|..++++ +..+|..|++++++++|||
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~----------p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADF----------PGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCC----------CCCCcccceEEEECCEEEE
Confidence 68899999999899999999999743 67899997 56899999873 3346788999999999999
Q ss_pred EcccCCCC-----CCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCC---------------
Q 009910 162 VGGKTDSG-----SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKR--------------- 220 (522)
Q Consensus 162 ~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~--------------- 220 (522)
+||..... ..++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 99986422 136789999999999999873 467888888877 7899999999986320
Q ss_pred ------------------CccCcEEEEEcCCCcEEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCCCCC-CCCcEEEE
Q 009910 221 ------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSL 280 (522)
Q Consensus 221 ------------------~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~y 280 (522)
..++++++||+.+++|+.++ ++|. +|..+++++++++ |||+||..... ...+++.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y 222 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQY 222 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEE
Confidence 02478999999999999997 7885 6888988899988 99999985432 23456666
Q ss_pred E--cCCCcEEEeeeCCCC----CCCccceEEEEECCEEEEEcccCCCC-----------------CcCeEEEEECCCCce
Q 009910 281 D--FETMIWTRIKIRGFH----PSPRAGCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEW 337 (522)
Q Consensus 281 d--~~~~~W~~~~~~~~~----p~~r~~~~~~~~~~~iyi~GG~~~~~-----------------~~~~v~~yd~~~~~W 337 (522)
+ +++++|+.++.++.+ +..+.+|++++++++|||+||.+... ....+.+||+++++|
T Consensus 223 ~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 223 LFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred EecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 5 477799999877321 11234566778899999999975211 123578999999999
Q ss_pred EEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC--CCCcEEEEE
Q 009910 338 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLS 385 (522)
Q Consensus 338 ~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~--~~~~v~~y~ 385 (522)
+.+..+ |.+|..+++++++ ++|||+||.... ..++|+.+.
T Consensus 303 ~~~~~l----p~~~~~~~~~~~~----~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGKL----PQGLAYGVSVSWN----NGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCCC----CCCceeeEEEEcC----CEEEEEeccCCCCCEeeeEEEEE
Confidence 998744 3567777776676 789999998643 377887764
No 12
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=9.3e-37 Score=319.07 Aligned_cols=300 Identities=32% Similarity=0.526 Sum_probs=261.7
Q ss_pred ecCCCCCCccceEEEEECCEEEEEcCcCCCCCccc--EEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCE
Q 009910 81 IAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK 158 (522)
Q Consensus 81 ~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~--v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 158 (522)
+.+..|.+|.+|+++.+++++|||||........+ +|++|..+..|......+ ..+++|.+|+++.++++
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g--------~~p~~r~g~~~~~~~~~ 124 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG--------DEPSPRYGHSLSAVGDK 124 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC--------CCCCcccceeEEEECCe
Confidence 34578999999999999999999999876665555 999999999999888764 23468899999999999
Q ss_pred EEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEE
Q 009910 159 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (522)
Q Consensus 159 iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 238 (522)
||+|||.+......++++.||+.|++|..+.+.++.|.+|.+|+++.+++++|||||.+.....++++|+||+++.+|.+
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccccee
Confidence 99999998756668899999999999999999998999999999999999999999999887689999999999999999
Q ss_pred eecCCCCCCCCcceEEEEECCcEEEEEcCCC-CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcc
Q 009910 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (522)
Q Consensus 239 ~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG 317 (522)
+...|..|.||++|++++++++ ++||||.+ ...+++|+|.+|+.+..|..+...+..|.+|++|+++..+.+++|+||
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGG 283 (482)
T ss_pred cccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcC
Confidence 9999999999999999999999 77777766 788999999999999999999888999999999999988999999999
Q ss_pred cCCC-C-CcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC--CCCCcEEEEEcccC
Q 009910 318 GSRK-K-RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEKN 389 (522)
Q Consensus 318 ~~~~-~-~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~y~~~~~ 389 (522)
.... . .+.++|.||..+..|+.+.......+.++..++.+.+...++..+.++||... ...+++....+...
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLL 359 (482)
T ss_pred CcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhccccccccc
Confidence 8874 3 68999999999999999987553556788888888888777777888888543 33555655544443
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.1e-36 Score=306.68 Aligned_cols=286 Identities=17% Similarity=0.261 Sum_probs=221.1
Q ss_pred CCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcC--CCcEEEcccccccCCCCCCCCCCCccce
Q 009910 73 SENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGH 150 (522)
Q Consensus 73 ~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (522)
.-.++.++ ++|.+|..+++++++++|||+||... +.+++||+. +++|..+++ ++.++|.+|
T Consensus 16 ~~~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~r~~~ 78 (376)
T PRK14131 16 AANAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAA----------FPGGPREQA 78 (376)
T ss_pred ceecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCc----------CCCCCcccc
Confidence 34567777 89999998899999999999999643 458999987 478999887 344567889
Q ss_pred EEEEECCEEEEEcccCCC-----CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCC----
Q 009910 151 SLISWGKKVLLVGGKTDS-----GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR---- 220 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~---- 220 (522)
++++++++|||+||.... ....+++|+||+.+++|+.+++ .+|.++.+|+++. .+++||++||.+...
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 999999999999998641 1235789999999999999874 3577788888777 899999999985310
Q ss_pred -----------------------------CccCcEEEEEcCCCcEEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCCC
Q 009910 221 -----------------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSK 270 (522)
Q Consensus 221 -----------------------------~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~ 270 (522)
...+++++||+.+++|+.+. ++|. +|..|+++.++++ |||+||...
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~-iYv~GG~~~ 232 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNK-LWLINGEIK 232 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCE-EEEEeeeEC
Confidence 12478999999999999986 7775 7888888888888 999999743
Q ss_pred C-CCCCcEE--EEEcCCCcEEEeeeCCCCCCCcc--------ceEEEEECCEEEEEcccCCCC-----------------
Q 009910 271 S-KTLNDLY--SLDFETMIWTRIKIRGFHPSPRA--------GCCGVLCGTKWYIAGGGSRKK----------------- 322 (522)
Q Consensus 271 ~-~~~~~v~--~yd~~~~~W~~~~~~~~~p~~r~--------~~~~~~~~~~iyi~GG~~~~~----------------- 322 (522)
. ....+++ .||+++++|+.+..+ |.+|. ++.+++++++|||+||.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T PRK14131 233 PGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK 309 (376)
T ss_pred CCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc
Confidence 2 2334454 457789999999876 44442 233567899999999975321
Q ss_pred CcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC--CCCCcEEEEEcccCCcc
Q 009910 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEKNESS 392 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~y~~~~~~w~ 392 (522)
....+.+||+++++|+.+..+ |.+|..+++++++ +.|||+||... ...++|++|+++.+.++
T Consensus 310 ~~~~~e~yd~~~~~W~~~~~l----p~~r~~~~av~~~----~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 310 KSWSDEIYALVNGKWQKVGEL----PQGLAYGVSVSWN----NGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred ceeehheEEecCCcccccCcC----CCCccceEEEEeC----CEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 012457899999999988743 3567778777776 77999999854 34889999999877654
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=9.2e-36 Score=299.18 Aligned_cols=261 Identities=18% Similarity=0.323 Sum_probs=206.1
Q ss_pred CCccceEEEEECCEEEEEcCcCCCC----------CcccEEEEEcCC--CcEEEcccccccCCCCCCCCCCCccceEEEE
Q 009910 87 IPRFNHAAAVIGNKMIVVGGESGNG----------LLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLIS 154 (522)
Q Consensus 87 ~~R~~~~~~~~~~~iyv~GG~~~~~----------~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 154 (522)
..+.++.++++++.|||+||..... ..+++++|+... .+|..++++ +. +|..+++++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l----------p~-~r~~~~~~~ 70 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL----------PY-EAAYGASVS 70 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC----------Cc-cccceEEEE
Confidence 4577899999999999999976432 346899886322 379998873 33 455677788
Q ss_pred ECCEEEEEcccCCCCCCceeEEEEECCCCcE----EEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEE
Q 009910 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECW----SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (522)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W----~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 230 (522)
++++||++||.+. ....+++|+||+.+++| +.++ ++|.+|..|++++++++||++||.... ..++++++||
T Consensus 71 ~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~---~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd 145 (323)
T TIGR03548 71 VENGIYYIGGSNS-SERFSSVYRITLDESKEELICETIG---NLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFN 145 (323)
T ss_pred ECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcC---CCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEc
Confidence 8999999999864 34578999999999998 4444 699999999999999999999998544 4579999999
Q ss_pred cCCCcEEEeecCCCCC-CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCC--CCCCccceEEEE
Q 009910 231 LKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--HPSPRAGCCGVL 307 (522)
Q Consensus 231 ~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~p~~r~~~~~~~ 307 (522)
+.+++|++++ ++| .+|..|++++++++ |||+||.+... ..++++||+++++|+.++.+.. .|.++..+++++
T Consensus 146 ~~~~~W~~~~---~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~ 220 (323)
T TIGR03548 146 LETQEWFELP---DFPGEPRVQPVCVKLQNE-LYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK 220 (323)
T ss_pred CCCCCeeECC---CCCCCCCCcceEEEECCE-EEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEE
Confidence 9999999997 666 47889988889988 99999986533 4678999999999999987532 244444555444
Q ss_pred -ECCEEEEEcccCCCC--------------------------------CcCeEEEEECCCCceEEeccCCCCCCCCCCCc
Q 009910 308 -CGTKWYIAGGGSRKK--------------------------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGF 354 (522)
Q Consensus 308 -~~~~iyi~GG~~~~~--------------------------------~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~ 354 (522)
.+++|||+||.+... ..+++++||+.+++|+.++..|. .+|.++
T Consensus 221 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~~r~~~ 297 (323)
T TIGR03548 221 INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF---FARCGA 297 (323)
T ss_pred ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc---cccCch
Confidence 478999999986421 13679999999999999884332 478888
Q ss_pred EEEEEeeCCccEEEEEcCCCC
Q 009910 355 TLVLVQHKEKDFLVAFGGIKK 375 (522)
Q Consensus 355 ~~~~~~~~~~~~l~v~GG~~~ 375 (522)
++++++ +.||++||...
T Consensus 298 ~~~~~~----~~iyv~GG~~~ 314 (323)
T TIGR03548 298 ALLLTG----NNIFSINGELK 314 (323)
T ss_pred heEEEC----CEEEEEecccc
Confidence 898887 77999999754
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=9e-36 Score=319.68 Aligned_cols=247 Identities=18% Similarity=0.296 Sum_probs=212.2
Q ss_pred CCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCC-CcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (522)
...+|..++ +.|. +..|++++++++|||+||..... ..+++++||+.+++|..++++ +.+|.+|
T Consensus 272 ~~~~~~~~~---~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----------~~~R~~~ 336 (534)
T PHA03098 272 PLSEINTII---DIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-----------IYPRKNP 336 (534)
T ss_pred hhhhccccc---Cccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-----------Ccccccc
Confidence 667788875 4443 45578899999999999986544 467999999999999998874 2367789
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEE
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 230 (522)
++++++++||++||... ....+++++||+.+++|+.+++ +|.+|.+|+++.++++||++||.......++++++||
T Consensus 337 ~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~---lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEPP---LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred eEEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCCC---cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence 99999999999999863 4457789999999999999884 9999999999999999999999866555689999999
Q ss_pred cCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCC---CCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE
Q 009910 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (522)
Q Consensus 231 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~ 307 (522)
+.+++|+.++ ++|.+|.+|+++.++++ |||+||.+... ..+.+++||+++++|+.++.+ |.+|..++++.
T Consensus 413 ~~t~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~ 485 (534)
T PHA03098 413 LNTNKWSKGS---PLPISHYGGCAIYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCI 485 (534)
T ss_pred CCCCeeeecC---CCCccccCceEEEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCC---CcccccceEEE
Confidence 9999999987 78999999999999988 99999986432 356799999999999999765 78899999999
Q ss_pred ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCC
Q 009910 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP 344 (522)
Q Consensus 308 ~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 344 (522)
++++|||+||.......+++++||+.+++|+.+...|
T Consensus 486 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 486 FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 9999999999987666789999999999999987544
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.5e-35 Score=296.59 Aligned_cols=264 Identities=20% Similarity=0.300 Sum_probs=201.9
Q ss_pred ccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCC-CCccceEEEEECCEEEEEcCcCCCC---
Q 009910 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGNG--- 111 (522)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~~~--- 111 (522)
..+..++.||++||.... ....++++. .+++|..++ ++| .+|..|++++++++|||+||.....
T Consensus 12 ~~~~~~~~vyv~GG~~~~-----~~~~~d~~~----~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAGT-----SWYKLDLKK----PSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred eEEEECCEEEEEccccCC-----eeEEEECCC----CCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCC
Confidence 444558899999996321 112233322 578899998 788 5899999999999999999975422
Q ss_pred ---CcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcccCCCC------------------
Q 009910 112 ---LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSG------------------ 169 (522)
Q Consensus 112 ---~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~------------------ 169 (522)
.++++++||+.+++|+.++.. .+..+.+|+++ +++++||++||.+...
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~~----------~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDTR----------SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred cceecccEEEEECCCCEEecCCCC----------CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 468999999999999998741 23345677766 6899999999986310
Q ss_pred ---------------CCceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEc--
Q 009910 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL-- 231 (522)
Q Consensus 170 ---------------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-- 231 (522)
...+++++||+.+++|+.+++ ||. +|.+++++.++++|||+||.........+++.||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~---~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE---NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECCCCceeECcc---CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC
Confidence 013689999999999999984 885 68899999999999999998654333456766664
Q ss_pred CCCcEEEeecCCCCCCCC-------cceEEEEECCcEEEEEcCCCCCC-----------------CCCcEEEEEcCCCcE
Q 009910 232 KSLTWLPLHCTGTGPSPR-------SNHVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMIW 287 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r-------~~~~~~~~~~~~lyv~GG~~~~~-----------------~~~~v~~yd~~~~~W 287 (522)
++++|+.++ .+|.+| ..|++++++++ |||+||.+... ....+++||+++++|
T Consensus 227 ~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 227 GKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGV-LLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred CCceeeecC---CCCCCCCCccccccEEeeeEECCE-EEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 677999997 676654 35557788888 99999985211 124689999999999
Q ss_pred EEeeeCCCCCCCccceEEEEECCEEEEEcccCC-CCCcCeEEEEE
Q 009910 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR-KKRHAETLIFD 331 (522)
Q Consensus 288 ~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~-~~~~~~v~~yd 331 (522)
+.+..+ |.+|..+++++++++|||+||.+. ....++++.|.
T Consensus 303 ~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 999776 888998888889999999999875 35667787664
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=310.76 Aligned_cols=263 Identities=17% Similarity=0.216 Sum_probs=218.6
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 178 (522)
..+++.||.. .....+..|+...++|..++. .+.+..|+++++++.||++||........+++++|
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y 316 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIID------------IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSY 316 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccC------------ccccccceEEEECCEEEEECCCcCCCCeeccEEEE
Confidence 3455556544 223456678888889988765 22344578999999999999997655566789999
Q ss_pred ECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEEC
Q 009910 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258 (522)
Q Consensus 179 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~ 258 (522)
|+.+++|..++ +||.+|..|+++.++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..|+++.++
T Consensus 317 d~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 317 DTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVN 389 (534)
T ss_pred eCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEEC
Confidence 99999999887 499999999999999999999999754 56889999999999999987 899999999999999
Q ss_pred CcEEEEEcCCCC-CCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCC---CcCeEEEEECCC
Q 009910 259 DKNLLIFGGSSK-SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLIFDILK 334 (522)
Q Consensus 259 ~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~---~~~~v~~yd~~~ 334 (522)
++ ||++||... ...++++++||+.+++|+.+.++ |.+|.+++++.++++|||+||.+... ..+.+++||+.+
T Consensus 390 ~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 390 NL-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CE-EEEECCcCCCCcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 88 999999743 34578999999999999998765 88999999999999999999976432 256799999999
Q ss_pred CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 009910 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (522)
Q Consensus 335 ~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~y~~~~~~w~~~ 394 (522)
++|+.++.. +.+|.+++++.++ +.|||+||..... .++|++||+++++|...
T Consensus 466 ~~W~~~~~~----~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 466 NKWTELSSL----NFPRINASLCIFN----NKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CceeeCCCC----CcccccceEEEEC----CEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 999998743 3567788888775 6799999987654 78999999999999876
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.8e-34 Score=289.87 Aligned_cols=261 Identities=16% Similarity=0.199 Sum_probs=201.0
Q ss_pred ccCCCCCceEeeCCCCCCC-------cccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcC
Q 009910 36 NSNPNSECVAPSSNHADDR-------DCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES 108 (522)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~-------~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~ 108 (522)
.+...++.||++||..... ...+..++|.++. ...+.+|..++ ++|.+|..+++++++++||++||..
T Consensus 8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~--~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKD--ENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEec--CCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCC
Confidence 3444578899999954321 1234445554421 01234799987 8999999899999999999999988
Q ss_pred CCCCcccEEEEEcCCCcE----EEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCc
Q 009910 109 GNGLLDDVQVLNFDRFSW----TAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC 184 (522)
Q Consensus 109 ~~~~~~~v~~yd~~~~~W----~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 184 (522)
....++++++||+.+++| +.+++ + +.+|..|++++++++|||+||... ....+++++||+.+++
T Consensus 83 ~~~~~~~v~~~d~~~~~w~~~~~~~~~----------l-p~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 83 SSERFSSVYRITLDESKEELICETIGN----------L-PFTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQE 150 (323)
T ss_pred CCCCceeEEEEEEcCCceeeeeeEcCC----------C-CcCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCCC
Confidence 777789999999999998 55554 2 335568999999999999999753 3457899999999999
Q ss_pred EEEeeecCCCC-CCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCC--CCCCCCcceEEEEECCcE
Q 009910 185 WSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKN 261 (522)
Q Consensus 185 W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~ 261 (522)
|+.+++ +| .+|..|+++.++++|||+||.+.. ...++++||+++++|+.++... ..|.++..++++++.+..
T Consensus 151 W~~~~~---~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 151 WFELPD---FPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred eeECCC---CCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 999874 76 479999999999999999998654 3567899999999999997431 234445556655665444
Q ss_pred EEEEcCCCCCC--------------------------------CCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEEC
Q 009910 262 LLIFGGSSKSK--------------------------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG 309 (522)
Q Consensus 262 lyv~GG~~~~~--------------------------------~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 309 (522)
|||+||.+... +.+++++||+.+++|+.++.+ +..+|.+++++.++
T Consensus 226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTG 303 (323)
T ss_pred EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCchheEEEC
Confidence 99999986421 246799999999999999754 12589999999999
Q ss_pred CEEEEEcccCC
Q 009910 310 TKWYIAGGGSR 320 (522)
Q Consensus 310 ~~iyi~GG~~~ 320 (522)
++||++||...
T Consensus 304 ~~iyv~GG~~~ 314 (323)
T TIGR03548 304 NNIFSINGELK 314 (323)
T ss_pred CEEEEEecccc
Confidence 99999999754
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.1e-34 Score=294.75 Aligned_cols=272 Identities=20% Similarity=0.265 Sum_probs=207.3
Q ss_pred ccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCC-CCccceEEEEECCEEEEEcCcCC-----
Q 009910 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESG----- 109 (522)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~----- 109 (522)
+....+++||++||..... ...|+++. .++.|..++ ++| .+|.+|++++++++|||+||...
T Consensus 33 ~~~~~~~~iyv~gG~~~~~-----~~~~d~~~----~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~ 100 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTS-----WYKLDLNA----PSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEG 100 (376)
T ss_pred eEEEECCEEEEEeCCCCCe-----EEEEECCC----CCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCC
Confidence 4444588899999953321 12244321 467899997 666 58999999999999999999764
Q ss_pred -CCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCC------------------
Q 009910 110 -NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG------------------ 169 (522)
Q Consensus 110 -~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~------------------ 169 (522)
...++++++||+.+++|+.++.+ .+..+.+|++++ .+++||++||.....
T Consensus 101 ~~~~~~~v~~YD~~~n~W~~~~~~----------~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~ 170 (376)
T PRK14131 101 SPQVFDDVYKYDPKTNSWQKLDTR----------SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK 170 (376)
T ss_pred ceeEcccEEEEeCCCCEEEeCCCC----------CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence 12368999999999999999752 233456777777 799999999975310
Q ss_pred ---------------CCceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCCccCcEE--EEEc
Q 009910 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLH--MFDL 231 (522)
Q Consensus 170 ---------------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~--~yd~ 231 (522)
...+++++||+.+++|+.+++ +|. +|.+|+++.++++|||+||....+....+++ .||+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~---~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 171 DKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE---SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc---CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 024689999999999999874 785 7888999999999999999865433445555 4577
Q ss_pred CCCcEEEeecCCCCCCCCcc--------eEEEEECCcEEEEEcCCCCCC-----------------CCCcEEEEEcCCCc
Q 009910 232 KSLTWLPLHCTGTGPSPRSN--------HVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMI 286 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~--------~~~~~~~~~~lyv~GG~~~~~-----------------~~~~v~~yd~~~~~ 286 (522)
++++|..+. .+|.+|.. +.+++++++ |||+||.+... ....+++||+++++
T Consensus 248 ~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~ 323 (376)
T PRK14131 248 NNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGV-LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK 323 (376)
T ss_pred CCcceeecC---CCCCCCcCCcCCccceEeceeECCE-EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc
Confidence 899999997 67766532 335667887 99999975311 01246799999999
Q ss_pred EEEeeeCCCCCCCccceEEEEECCEEEEEcccCC-CCCcCeEEEEECCCCceEE
Q 009910 287 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR-KKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 287 W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~-~~~~~~v~~yd~~~~~W~~ 339 (522)
|+.+..+ |.+|..++++.++++|||+||... ....+++++|+++.+.++.
T Consensus 324 W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 324 WQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ccccCcC---CCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 9998765 889999999999999999999864 3567899999998887764
No 20
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.8e-34 Score=279.64 Aligned_cols=304 Identities=25% Similarity=0.488 Sum_probs=251.3
Q ss_pred CCCceEEeee-cCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 009910 72 NSENWMVLSI-AGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (522)
Q Consensus 72 ~~~~W~~l~~-~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (522)
.--+|+.+.. .|+.|.||++|-++++..-|+|||| .+.+..+++++|+..+++|..-...+ ..+|++..|
T Consensus 15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGG-GNEGiiDELHvYNTatnqWf~PavrG--------DiPpgcAA~ 85 (830)
T KOG4152|consen 15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGG-GNEGIIDELHVYNTATNQWFAPAVRG--------DIPPGCAAF 85 (830)
T ss_pred cccceEEEecccCCCCCccccchheeeeeeEEEecC-CcccchhhhhhhccccceeecchhcC--------CCCCchhhc
Confidence 4457998865 5788999999999999999999999 44567899999999999998766543 456678889
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec----CCCCCCCcceEEEEECCEEEEEcccCCC-------
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK----GDIPVARSGHTVVRASSVLILFGGEDGK------- 219 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~~------- 219 (522)
.++..+.+||+|||+..-+...+++|.+....-.|+++.+. |..|.+|.+|+...++++.|+|||..++
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence 99999999999999988888888888887777778877653 6689999999999999999999998543
Q ss_pred -CCccCcEEEEEcCCC----cEEEeecCCCCCCCCcceEEEEECC-----cEEEEEcCCCCCCCCCcEEEEEcCCCcEEE
Q 009910 220 -RRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDD-----KNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (522)
Q Consensus 220 -~~~~~~v~~yd~~t~----~W~~~~~~g~~p~~r~~~~~~~~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (522)
-.+++|+|++++.-. .|......|.+|.+|..|+++++.. .++|||||.++- .+.|+|.+|+++.+|.+
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeeccc
Confidence 247899999998743 4999988899999999999999821 259999998764 58999999999999999
Q ss_pred eeeCCCCCCCccceEEEEECCEEEEEcccCC----C----------CCcCeEEEEECCCCceEEeccCC---CCCCCCCC
Q 009910 290 IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR----K----------KRHAETLIFDILKGEWSVAITSP---SSSVTSNK 352 (522)
Q Consensus 290 ~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~----~----------~~~~~v~~yd~~~~~W~~~~~~p---~~~~~~r~ 352 (522)
....|..|.||+-|+++.+++++|||||.-- + +..+.+-++++++..|+.+-... ...|++|.
T Consensus 245 p~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RA 324 (830)
T KOG4152|consen 245 PSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARA 324 (830)
T ss_pred ccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccc
Confidence 9999999999999999999999999999631 1 12345668999999999864322 22678999
Q ss_pred CcEEEEEeeCCccEEEEEcCCCCCC--------CCcEEEEEcccC
Q 009910 353 GFTLVLVQHKEKDFLVAFGGIKKEP--------SNQVEVLSIEKN 389 (522)
Q Consensus 353 ~~~~~~~~~~~~~~l~v~GG~~~~~--------~~~v~~y~~~~~ 389 (522)
+|++++++ .++|+.-|.++.. ..++|.+|.+..
T Consensus 325 GHCAvAig----tRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 325 GHCAVAIG----TRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred cceeEEec----cEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 99999998 7899999987643 456677765543
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=7.3e-33 Score=291.29 Aligned_cols=212 Identities=16% Similarity=0.228 Sum_probs=187.0
Q ss_pred EEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCce
Q 009910 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 173 (522)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 173 (522)
++.+++.||++||.......+++++||+.+++|..++++ + .+|..+++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m----------~-~~r~~~~~v~~~~~iYviGG~~~----~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM----------N-SPRLYASGVPANNKLYVVGGLPN----PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC----------C-chhhcceEEEECCEEEEECCcCC----CC
Confidence 455899999999987666778999999999999999984 2 35667888999999999999753 24
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceE
Q 009910 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (522)
++++||+.+++|+.+++ ||.+|..|++++++++||++||.+.. .+.+++|||.+++|+.++ ++|.+|..++
T Consensus 332 sve~ydp~~n~W~~~~~---l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~ 402 (480)
T PHA02790 332 SVERWFHGDAAWVNMPS---LLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSC 402 (480)
T ss_pred ceEEEECCCCeEEECCC---CCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccce
Confidence 69999999999999985 99999999999999999999998643 367999999999999997 8999999999
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 009910 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
+++++++ ||++||. +.+||+++++|+.++++ |.+|..+++++++++||++||.+.....+.+++||+.
T Consensus 403 ~~~~~~~-IYv~GG~--------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 403 ALVFGRR-LFLVGRN--------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEECCE-EEEECCc--------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 9999998 9999984 68899999999999776 8899999999999999999998765556789999999
Q ss_pred CCceEEec
Q 009910 334 KGEWSVAI 341 (522)
Q Consensus 334 ~~~W~~~~ 341 (522)
+++|+...
T Consensus 471 ~~~W~~~~ 478 (480)
T PHA02790 471 TYSWNIWD 478 (480)
T ss_pred CCeEEecC
Confidence 99998643
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=268.35 Aligned_cols=248 Identities=30% Similarity=0.525 Sum_probs=211.4
Q ss_pred CCCCCccceEEEEE--CCEEEEEcCcCCCC----CcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-
Q 009910 84 DKPIPRFNHAAAVI--GNKMIVVGGESGNG----LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG- 156 (522)
Q Consensus 84 ~~p~~R~~~~~~~~--~~~iyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 156 (522)
++|.||.+.++++. .+.|++|||.--++ .+|++|.||..+++|+.+... ..+|+|..|.+|++-
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp---------n~P~pRsshq~va~~s 132 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP---------NAPPPRSSHQAVAVPS 132 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC---------CCcCCCccceeEEecc
Confidence 57889999988876 36799999964332 379999999999999999763 456788889988885
Q ss_pred CEEEEEcccCCCCC-----CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC---CCccCcEEE
Q 009910 157 KKVLLVGGKTDSGS-----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK---RRKLNDLHM 228 (522)
Q Consensus 157 ~~iyv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~ 228 (522)
+.+|||||...... ...++|.||..+++|+++...+ .|.+|++|.+++...+|++|||+... ..++||+|+
T Consensus 133 ~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~ 211 (521)
T KOG1230|consen 133 NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYA 211 (521)
T ss_pred CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEE
Confidence 89999999865332 2568999999999999998755 79999999999999999999998543 347899999
Q ss_pred EEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCC---------CCCCCcEEEEEcCC-----CcEEEeeeC
Q 009910 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK---------SKTLNDLYSLDFET-----MIWTRIKIR 293 (522)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~---------~~~~~~v~~yd~~~-----~~W~~~~~~ 293 (522)
||+++-+|+++.+.|..|.||++|++.+. ++. |||+||++. ....+|+|.++++. -.|+.+.+.
T Consensus 212 FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~ 290 (521)
T KOG1230|consen 212 FDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS 290 (521)
T ss_pred EeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC
Confidence 99999999999998889999999999999 666 999999963 34678999999988 689999999
Q ss_pred CCCCCCccceEEEEE-CCEEEEEcccCC---------CCCcCeEEEEECCCCceEEecc
Q 009910 294 GFHPSPRAGCCGVLC-GTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 294 ~~~p~~r~~~~~~~~-~~~iyi~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
+..|.||.++++++. +++-|.|||... ....+++|.||++.++|.....
T Consensus 291 g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 291 GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 999999999999887 669999999754 2357899999999999987543
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=8.8e-33 Score=289.15 Aligned_cols=247 Identities=33% Similarity=0.539 Sum_probs=222.6
Q ss_pred CCCCCccceEEEEECCEEEEEcccCCCCCCce-eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCC
Q 009910 142 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 220 (522)
Q Consensus 142 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 220 (522)
..+.+|.+|+++.+++++|||||......... ++|++|..+..|....+.+..|.+|++|+++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 34667899999999999999999976554433 69999999999999999999999999999999999999999998755
Q ss_pred CccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCC-CCCcEEEEEcCCCcEEEeeeCCCCCCC
Q 009910 221 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSP 299 (522)
Q Consensus 221 ~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~~~~p~~ 299 (522)
..+++++.||+.+.+|+.+.+.+..|.+|.+|++++++++ +|||||.+... ..|++|+||+++.+|.++...+..|.|
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~-l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK-LVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE-EEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 6789999999999999999998889999999999999977 99999998766 899999999999999999999999999
Q ss_pred ccceEEEEECCEEEEEcccC-CCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC--
Q 009910 300 RAGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 376 (522)
Q Consensus 300 r~~~~~~~~~~~iyi~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~-- 376 (522)
|.+|++++++++++|+||.+ ++..++|+|.||+.+.+|..+.. ....|.+|.+|+++..+ .+++++||....
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~-~g~~p~~R~~h~~~~~~----~~~~l~gG~~~~~~ 289 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPT-GGDLPSPRSGHSLTVSG----DHLLLFGGGTDPKQ 289 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccc-cCCCCCCcceeeeEEEC----CEEEEEcCCccccc
Confidence 99999999999999999988 77889999999999999996554 45677999999999665 789999998763
Q ss_pred -CCCcEEEEEcccCCcccc
Q 009910 377 -PSNQVEVLSIEKNESSMG 394 (522)
Q Consensus 377 -~~~~v~~y~~~~~~w~~~ 394 (522)
...+++.|++++..|+..
T Consensus 290 ~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 290 EPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred ccccccccccccccceeee
Confidence 689999999999988764
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.6e-31 Score=279.54 Aligned_cols=209 Identities=16% Similarity=0.274 Sum_probs=182.5
Q ss_pred EEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEc
Q 009910 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
.+..++.||++||.+. ....+++++||+.+++|..+++ ||.+|..++++.++++||++||.+.. +++++||+
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCCC----CceEEEEC
Confidence 3458999999999854 3456789999999999999985 99999999999999999999998532 56999999
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCE
Q 009910 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 311 (522)
.+++|+.++ ++|.+|..|++++++++ ||++||.+.. .+.+.+|||++++|+.++++ |.+|.++++++++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~-IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNV-IYVIGGHSET--DTTTEYLLPNHDQWQFGPST---YYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCE-EEEecCcCCC--CccEEEEeCCCCEEEeCCCC---CCccccceEEEECCE
Confidence 999999998 89999999999999998 9999998643 36799999999999999776 889999999999999
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCC
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~y~~~~~~ 390 (522)
||++||. +.+||+.+++|+.++. ++.+|..+++++++ ++||++||.++.. .+.|++||+++++
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~~----m~~~r~~~~~~v~~----~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLIDD----PIYPRDNPELIIVD----NKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcCC----CCCCccccEEEEEC----CEEEEECCcCCCcccceEEEEECCCCe
Confidence 9999983 5789999999999873 23678889999987 7899999986433 6789999999999
Q ss_pred ccc
Q 009910 391 SSM 393 (522)
Q Consensus 391 w~~ 393 (522)
|+.
T Consensus 474 W~~ 476 (480)
T PHA02790 474 WNI 476 (480)
T ss_pred EEe
Confidence 976
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=255.85 Aligned_cols=238 Identities=23% Similarity=0.440 Sum_probs=200.7
Q ss_pred CCceEeeCCCC-CCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEEC-CEEEEEcCcCCC--C----C
Q 009910 41 SECVAPSSNHA-DDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGN--G----L 112 (522)
Q Consensus 41 ~~~i~~~GG~~-~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~-~~iyv~GG~~~~--~----~ 112 (522)
.+.+++|||.. ++......+++|..++ ..+.|+.+... +.|+||++|+++++. |.+|+|||.-.. + -
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~----k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~H 152 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNT----KKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHH 152 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEec----cccceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhh
Confidence 45599999943 4444555566677666 99999999743 678899999999986 899999996322 1 2
Q ss_pred cccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCC---CceeEEEEECCCCcEEEee
Q 009910 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS---DRVSVWTFDTETECWSVVE 189 (522)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~v~~yd~~t~~W~~~~ 189 (522)
+.|+|+||+.+++|+++...+ .+.+|.+|.++++..+|++|||+.+... ..|+||+||+++-+|+++.
T Consensus 153 YkD~W~fd~~trkweql~~~g---------~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kle 223 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFGG---------GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLE 223 (521)
T ss_pred hhheeeeeeccchheeeccCC---------CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeecc
Confidence 679999999999999998753 4557899999999999999999977543 3789999999999999999
Q ss_pred ecCCCCCCCcceEEEEE-CCEEEEEcccCC--------CCCccCcEEEEEcCC-----CcEEEeecCCCCCCCCcceEEE
Q 009910 190 AKGDIPVARSGHTVVRA-SSVLILFGGEDG--------KRRKLNDLHMFDLKS-----LTWLPLHCTGTGPSPRSNHVAA 255 (522)
Q Consensus 190 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~--------~~~~~~~v~~yd~~t-----~~W~~~~~~g~~p~~r~~~~~~ 255 (522)
+.+.-|.+|++|++.+. .+.|||+||+.. .+...+|+|.+++.. ..|+++.+.|..|.||.+++++
T Consensus 224 psga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~ 303 (521)
T KOG1230|consen 224 PSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA 303 (521)
T ss_pred CCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE
Confidence 98888999999999998 899999999952 345789999999998 6899999999999999999999
Q ss_pred EECCcEEEEEcCCCC---------CCCCCcEEEEEcCCCcEEEeee
Q 009910 256 LYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 256 ~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 292 (522)
+..+..-|.|||... ..++|++|.||+..+.|.....
T Consensus 304 va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 304 VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 998866999999843 3578999999999999987654
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.9e-31 Score=256.90 Aligned_cols=286 Identities=24% Similarity=0.390 Sum_probs=231.5
Q ss_pred CCCccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCC-C
Q 009910 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-G 111 (522)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~-~ 111 (522)
..|.++...+.|++|||.++++.- .-.+|+. .+++|...++.|+.|++-..|+++..+.+||+|||+.+- .
T Consensus 34 HGHRAVaikELiviFGGGNEGiiD--ELHvYNT------atnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGk 105 (830)
T KOG4152|consen 34 HGHRAVAIKELIVIFGGGNEGIID--ELHVYNT------ATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGK 105 (830)
T ss_pred ccchheeeeeeEEEecCCcccchh--hhhhhcc------ccceeecchhcCCCCCchhhcceEecCceEEEEccEeeecc
Confidence 444777778999999997776521 1223444 999999999999999999999999999999999998654 4
Q ss_pred CcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCC--------CceeEEEEECCCC
Q 009910 112 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS--------DRVSVWTFDTETE 183 (522)
Q Consensus 112 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~v~~yd~~t~ 183 (522)
.+|++|-+....-.|+++.+..... ..++.+|.+|++..++++.|+|||.....+ .++|+|++++.-+
T Consensus 106 YsNdLYELQasRWeWkrlkp~~p~n----G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~G 181 (830)
T KOG4152|consen 106 YSNDLYELQASRWEWKRLKPKTPKN----GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPG 181 (830)
T ss_pred ccchHHHhhhhhhhHhhcCCCCCCC----CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccC
Confidence 5788877776677888887743211 145668899999999999999999865332 3678999988754
Q ss_pred ----cEEEeeecCCCCCCCcceEEEEE------CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceE
Q 009910 184 ----CWSVVEAKGDIPVARSGHTVVRA------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 184 ----~W~~~~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (522)
.|...-..|.+|.+|..|+++++ ..++|||||..+- .+.|+|.+|+++.+|.+....|..|.||.-|+
T Consensus 182 sgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHs 259 (830)
T KOG4152|consen 182 SGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHS 259 (830)
T ss_pred CceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCCCCccccc
Confidence 39988878889999999999987 2489999999875 68999999999999999999999999999999
Q ss_pred EEEECCcEEEEEcCCCC--------------CCCCCcEEEEEcCCCcEEEeeeC----CCCCCCccceEEEEECCEEEEE
Q 009910 254 AALYDDKNLLIFGGSSK--------------SKTLNDLYSLDFETMIWTRIKIR----GFHPSPRAGCCGVLCGTKWYIA 315 (522)
Q Consensus 254 ~~~~~~~~lyv~GG~~~--------------~~~~~~v~~yd~~~~~W~~~~~~----~~~p~~r~~~~~~~~~~~iyi~ 315 (522)
+++++++ +|||||.-. -.+.+.+-++|+.++.|+.+-.. ...|.+|.+||++.++.++||.
T Consensus 260 a~~IGnK-MyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiW 338 (830)
T KOG4152|consen 260 ATTIGNK-MYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIW 338 (830)
T ss_pred ceeecce-eEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEE
Confidence 9999999 999999721 13567888999999999987642 2268999999999999999999
Q ss_pred cccCCC-------CCcCeEEEEECC
Q 009910 316 GGGSRK-------KRHAETLIFDIL 333 (522)
Q Consensus 316 GG~~~~-------~~~~~v~~yd~~ 333 (522)
.|.++- ....|+|.+|.+
T Consensus 339 SGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 339 SGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred eccchhhHhhccccchhhhhhhccc
Confidence 998752 234566777653
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.80 E-value=1.3e-17 Score=159.00 Aligned_cols=276 Identities=21% Similarity=0.343 Sum_probs=194.9
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCC--CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 009910 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (522)
Q Consensus 84 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv 161 (522)
++|.+--+-+.+.+++.+||-=|..+ ...+.+|++. ..|+.+.. .+..+|.+..+++++++||+
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~----------FpG~~rnqa~~a~~~~kLyv 97 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIAD----------FPGGARNQAVAAVIGGKLYV 97 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEccc----------CCCcccccchheeeCCeEEE
Confidence 77888777788899999998766433 4668888876 48999998 67888999999999999999
Q ss_pred EcccCCCCC----CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCC-----------------
Q 009910 162 VGGKTDSGS----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGK----------------- 219 (522)
Q Consensus 162 ~GG~~~~~~----~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~----------------- 219 (522)
|||...... ..+++|+||+.+++|.++.. ..|....+++++.+++ +||++||.+..
T Consensus 98 FgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 98 FGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred eeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 999865443 36799999999999999986 4677788888888887 99999998521
Q ss_pred ----------------CCccCcEEEEEcCCCcEEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCC-CCCCCCcEEEEE
Q 009910 220 ----------------RRKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLD 281 (522)
Q Consensus 220 ----------------~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd 281 (522)
......++.|||.+++|+.+. ..|. ++++ ++++..+..+.++-|.- ..-....+++++
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~ 251 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQAD 251 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccC-cceeecCCeEEEEcceecCCccccceeEEE
Confidence 123567999999999999985 4444 5555 44454444355555553 333445677777
Q ss_pred cC--CCcEEEeeeCCCCCCCc-cceEE---EEECCEEEEEcccCC-------------------CCCcCeEEEEECCCCc
Q 009910 282 FE--TMIWTRIKIRGFHPSPR-AGCCG---VLCGTKWYIAGGGSR-------------------KKRHAETLIFDILKGE 336 (522)
Q Consensus 282 ~~--~~~W~~~~~~~~~p~~r-~~~~~---~~~~~~iyi~GG~~~-------------------~~~~~~v~~yd~~~~~ 336 (522)
.. ..+|..+.+.+.++..- .+.+. -..++.+.+.||..- .....+||.|| .+.
T Consensus 252 ~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~ 329 (381)
T COG3055 252 FGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGS 329 (381)
T ss_pred eccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCc
Confidence 64 56899997763322111 22222 234788899998642 12467899998 899
Q ss_pred eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC--CCcEEEEEcccC
Q 009910 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLSIEKN 389 (522)
Q Consensus 337 W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~--~~~v~~y~~~~~ 389 (522)
|+.+..+|. +.. +++.+.. .+.||++||..... ...|..+..+.+
T Consensus 330 Wk~~GeLp~----~l~-YG~s~~~---nn~vl~IGGE~~~Gka~~~v~~l~~~gk 376 (381)
T COG3055 330 WKIVGELPQ----GLA-YGVSLSY---NNKVLLIGGETSGGKATTRVYSLSWDGK 376 (381)
T ss_pred eeeecccCC----Ccc-ceEEEec---CCcEEEEccccCCCeeeeeEEEEEEcCc
Confidence 999987664 333 3333332 26699999986443 566666554443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=3.3e-17 Score=156.24 Aligned_cols=265 Identities=21% Similarity=0.293 Sum_probs=187.5
Q ss_pred ccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCC-CCccceEEEEECCEEEEEcCcCCC----
Q 009910 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGN---- 110 (522)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p-~~R~~~~~~~~~~~iyv~GG~~~~---- 110 (522)
+....++.+|+.=|.. +... |.+++- .....|+.++ ..| .+|.+..+++++++||||||....
T Consensus 41 ~Ga~ig~~~YVGLGs~-G~af------y~ldL~--~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 41 AGALIGDTVYVGLGSA-GTAF------YVLDLK--KPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGKSVSSS 108 (381)
T ss_pred ccceecceEEEEeccC-Cccc------eehhhh--cCCCCceEcc---cCCCcccccchheeeCCeEEEeeccccCCCCC
Confidence 4444466778776622 2211 333221 1668999998 565 679999999999999999997533
Q ss_pred -CCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECC-EEEEEcccCCC--------------------
Q 009910 111 -GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDS-------------------- 168 (522)
Q Consensus 111 -~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~-------------------- 168 (522)
...+++|+||+.+++|..+... .+....+++++.+++ +||++||.+..
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~----------sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~ 178 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTR----------SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD 178 (381)
T ss_pred ceEeeeeEEecCCCChhheeccc----------cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence 3478999999999999999873 333467889999987 99999998620
Q ss_pred -------------CCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcC--
Q 009910 169 -------------GSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK-- 232 (522)
Q Consensus 169 -------------~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-- 232 (522)
......|+.|+|.+++|+.+-. .| .++++.+.+.-++++.++-|.-..+-.+..+++++..
T Consensus 179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~---~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~ 255 (381)
T COG3055 179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE---NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD 255 (381)
T ss_pred HHHHHHhCCCHHHhcccccccccccccchhhhcCc---CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccC
Confidence 0012359999999999998763 44 4566655555678899999987776667778887775
Q ss_pred CCcEEEeecCCCCCCCC-------cceEEEEECCcEEEEEcCCCC-------------------CCCCCcEEEEEcCCCc
Q 009910 233 SLTWLPLHCTGTGPSPR-------SNHVAALYDDKNLLIFGGSSK-------------------SKTLNDLYSLDFETMI 286 (522)
Q Consensus 233 t~~W~~~~~~g~~p~~r-------~~~~~~~~~~~~lyv~GG~~~-------------------~~~~~~v~~yd~~~~~ 286 (522)
..+|..+. ++|.+. .++-.-..++. ++|.||.+- ....++||.|| .+.
T Consensus 256 ~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~-~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~ 329 (381)
T COG3055 256 NLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGE-VLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGS 329 (381)
T ss_pred ceeeeecc---CCCCCCCCCccccceeccceeCCe-EEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCc
Confidence 46799986 444332 22222234455 888888641 12457899999 899
Q ss_pred EEEeeeCCCCCCCccceEEEEECCEEEEEcccCCC-CCcCeEEEEECCC
Q 009910 287 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFDILK 334 (522)
Q Consensus 287 W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~-~~~~~v~~yd~~~ 334 (522)
|+.+. ++|.++.+..++..++.||++||.+.. ....+++.+-...
T Consensus 330 Wk~~G---eLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 330 WKIVG---ELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred eeeec---ccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEcC
Confidence 99994 458888888888889999999998643 4555565554433
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.64 E-value=2.1e-16 Score=155.66 Aligned_cols=269 Identities=22% Similarity=0.328 Sum_probs=191.2
Q ss_pred CCcEEEcccccccCCCCCCCCCCCccceEEEEECC--EEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc
Q 009910 123 RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK--KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 200 (522)
Q Consensus 123 ~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 200 (522)
+..|.+++........ .-..+..|.+|.+|...+ .||++||+++ -..+.|+|.|+...+.|+.+...+..|-.|..
T Consensus 238 ~~~W~~i~~~~~~~~~-~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDG-EDNRPGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccc-cccCccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 4579888775321111 112455788999998865 9999999975 45688999999999999999876778999999
Q ss_pred eEEEEECC--EEEEEcccCCCC-----CccCcEEEEEcCCCcEEEeecC---CCCCCCCcceEEEEECCc-EEEEEcCCC
Q 009910 201 HTVVRASS--VLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDK-NLLIFGGSS 269 (522)
Q Consensus 201 ~~~~~~~~--~iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~-~lyv~GG~~ 269 (522)
|.++.... ++|+.|-+-... ..-.|+|+||..++.|+.+... ...|...+.|.+++.+++ ++|||||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99998654 999999874321 2346899999999999998543 136888999999998876 799999984
Q ss_pred C---CCCCCcEEEEEcCCCcEEEeeeCC-------CCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCce
Q 009910 270 K---SKTLNDLYSLDFETMIWTRIKIRG-------FHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (522)
Q Consensus 270 ~---~~~~~~v~~yd~~~~~W~~~~~~~-------~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W 337 (522)
- ...+..+|.||.....|..+...- +.-..|.+|++-.+ +.++|++||......++-.+.||+....=
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~ 475 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHV 475 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccc
Confidence 3 245678999999999999775421 12346888887665 67899999987765555556776654332
Q ss_pred EEecc--CCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC-------CCCCcEEEEEcccCCccc
Q 009910 338 SVAIT--SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESSM 393 (522)
Q Consensus 338 ~~~~~--~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~-------~~~~~v~~y~~~~~~w~~ 393 (522)
..+.. ....+..+-.++..-++.+.....|.+.-|... ...+..|+|++.+++|.-
T Consensus 476 ~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c 540 (723)
T KOG2437|consen 476 DIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC 540 (723)
T ss_pred hhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence 22211 011122333444444555555567777777532 136889999999999865
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.59 E-value=6.5e-16 Score=152.19 Aligned_cols=263 Identities=21% Similarity=0.309 Sum_probs=186.0
Q ss_pred CCCCceEEeeecC-------CCCCCccceEEEEECC--EEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCC
Q 009910 71 GNSENWMVLSIAG-------DKPIPRFNHAAAVIGN--KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLP 141 (522)
Q Consensus 71 ~~~~~W~~l~~~~-------~~p~~R~~~~~~~~~~--~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 141 (522)
+-..+|.+++... .-|..|.+|.++...+ .||++||+++.+.+.|+|+|+...+.|..+..-.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-------- 307 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-------- 307 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC--------
Confidence 4667888876543 4567799999998764 8999999999999999999999999999987642
Q ss_pred CCCCCccceEEEEECC--EEEEEcccCCCCC-----CceeEEEEECCCCcEEEeeec---CCCCCCCcceEEEEECCE--
Q 009910 142 LKIPACRGHSLISWGK--KVLLVGGKTDSGS-----DRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRASSV-- 209 (522)
Q Consensus 142 ~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~~~~~-- 209 (522)
-.|..|..|.+|.... ++|+.|-+-+... ...|+|+||..++.|..+.-. ..-|...+.|.+++.+++
T Consensus 308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~ 387 (723)
T KOG2437|consen 308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM 387 (723)
T ss_pred CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence 1344778899998754 9999998765332 356899999999999988642 235888999999999877
Q ss_pred EEEEcccCCC--CCccCcEEEEEcCCCcEEEeecC----C---CCCCCCcceEEEEECC-cEEEEEcCCCCCCCCCcEEE
Q 009910 210 LILFGGEDGK--RRKLNDLHMFDLKSLTWLPLHCT----G---TGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYS 279 (522)
Q Consensus 210 iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~~----g---~~p~~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~ 279 (522)
||||||+.-. ......++.||.....|..+... + .....|.+|++-.+.+ ..+|+|||......++-.+.
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~ 467 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFS 467 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhc
Confidence 9999998543 23567899999999999876421 0 1234577777766543 35999999987776777777
Q ss_pred EEcCCCcEEEeee-----CCCCCCCccceEEEEE---CCEEEEEcccCC------CCCcCeEEEEECCCCceEEecc
Q 009910 280 LDFETMIWTRIKI-----RGFHPSPRAGCCGVLC---GTKWYIAGGGSR------KKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 280 yd~~~~~W~~~~~-----~~~~p~~r~~~~~~~~---~~~iyi~GG~~~------~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
||+....=..+.. ....|.+ ....-++. ...|...-|.+. ....+..|+|+..++.|..+..
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~pS~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVPST-GFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred ceeccccchhhhccCcCccccCCCc-chhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhh
Confidence 7664332222211 0011221 11111222 456776666542 1245778999999999987654
No 31
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.22 E-value=5.9e-10 Score=103.57 Aligned_cols=207 Identities=14% Similarity=0.182 Sum_probs=136.6
Q ss_pred CCCCCcceEEEEE-C------CEEEEEcccCCCCCccCcEEEEEcCCCc--------EEEeecCCCCCCCCcceEEEEEC
Q 009910 194 IPVARSGHTVVRA-S------SVLILFGGEDGKRRKLNDLHMFDLKSLT--------WLPLHCTGTGPSPRSNHVAALYD 258 (522)
Q Consensus 194 ~p~~r~~~~~~~~-~------~~iyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~g~~p~~r~~~~~~~~~ 258 (522)
+|+.|.- +++.+ + ...++.||++.+++..+.+|+....+.. ..+....|+.|.+|++|++.++.
T Consensus 19 LPPLR~P-Av~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~ 97 (337)
T PF03089_consen 19 LPPLRCP-AVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH 97 (337)
T ss_pred CCCCCCc-cEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence 6666654 45544 2 2566779999988888999998876543 23334458999999999998763
Q ss_pred --C-cEEEEEcCCCCC--------------CCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCC
Q 009910 259 --D-KNLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (522)
Q Consensus 259 --~-~~lyv~GG~~~~--------------~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~ 321 (522)
+ ..+++|||.+.. .....|+..|++-+-.+.... +++..+..+|.+..-++.+|++||..-.
T Consensus 98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEcc
Confidence 2 368899998531 134568999998887765543 4556788889888889999999998643
Q ss_pred --CCcCeEEEEECCC---CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC------------CCcEEEE
Q 009910 322 --KRHAETLIFDILK---GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP------------SNQVEVL 384 (522)
Q Consensus 322 --~~~~~v~~yd~~~---~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~------------~~~v~~y 384 (522)
.....++++..+- .-+-.... .......+.+++...+.+..+|+||+..+. .+.|.+-
T Consensus 177 sd~Rpp~l~rlkVdLllGSP~vsC~v-----l~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie 251 (337)
T PF03089_consen 177 SDSRPPRLYRLKVDLLLGSPAVSCTV-----LQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIE 251 (337)
T ss_pred CCCCCCcEEEEEEeecCCCceeEEEE-----CCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEec
Confidence 3445566554321 11111111 122333455555555557889999996654 3556666
Q ss_pred EcccCCccccccCCCCCCCCceEEeecCCC
Q 009910 385 SIEKNESSMGRRSTPNAKGPGQLLFEKRSS 414 (522)
Q Consensus 385 ~~~~~~w~~~~~~~~~~~~~~~~~fgg~~~ 414 (522)
..+..+|+.. ......+|||+..
T Consensus 252 ~~E~P~Wt~d-------I~hSrtWFGgs~G 274 (337)
T PF03089_consen 252 EREPPEWTGD-------IKHSRTWFGGSMG 274 (337)
T ss_pred cCCCCCCCCC-------cCcCccccccccC
Confidence 6777788876 3344468998865
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.14 E-value=1.2e-10 Score=82.32 Aligned_cols=50 Identities=34% Similarity=0.619 Sum_probs=46.1
Q ss_pred CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 009910 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (522)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 249 (522)
+|.+|+++.++++|||+||.......++++++||+++++|++++ ++|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58999999999999999999885578999999999999999998 888887
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.09 E-value=2.4e-10 Score=80.87 Aligned_cols=50 Identities=32% Similarity=0.571 Sum_probs=45.0
Q ss_pred CccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCC
Q 009910 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 198 (522)
Q Consensus 146 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r 198 (522)
+|.+|++++++++|||+||........+++++||+++++|+.+++ ||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 367899999999999999998766778999999999999999984 99887
No 34
>PLN02772 guanylate kinase
Probab=98.94 E-value=5.3e-09 Score=104.46 Aligned_cols=90 Identities=18% Similarity=0.299 Sum_probs=78.5
Q ss_pred CCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCC
Q 009910 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (522)
Q Consensus 194 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~ 273 (522)
-+.++.+|+++.+++++|||||.+..+...+.+++||..+.+|......|..|.||.+|+++++++.+|+|+++.+..
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~-- 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP-- 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--
Confidence 355788999999999999999988865578999999999999999999999999999999999988779999876543
Q ss_pred CCcEEEEEcCCC
Q 009910 274 LNDLYSLDFETM 285 (522)
Q Consensus 274 ~~~v~~yd~~~~ 285 (522)
-+++|.+...+.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 367999887764
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.92 E-value=2.8e-09 Score=74.96 Aligned_cols=48 Identities=40% Similarity=0.706 Sum_probs=42.8
Q ss_pred CCEEEEEcccC-CCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE
Q 009910 207 SSVLILFGGED-GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (522)
Q Consensus 207 ~~~iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (522)
+++||||||.+ .....++++|+||+.+++|+++. ++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999998 45578999999999999999994 89999999999864
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.87 E-value=3.2e-09 Score=73.97 Aligned_cols=44 Identities=32% Similarity=0.611 Sum_probs=40.9
Q ss_pred CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEee
Q 009910 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (522)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 240 (522)
+|.+|++++++++||++||.+.....++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 58999999999999999999986688999999999999999997
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.85 E-value=6.4e-09 Score=72.43 Aligned_cols=45 Identities=27% Similarity=0.519 Sum_probs=41.1
Q ss_pred CccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeee
Q 009910 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (522)
Q Consensus 146 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 190 (522)
+|.+|++++++++|||+||.+......+++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 468899999999999999998867789999999999999999985
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.84 E-value=6.8e-09 Score=72.95 Aligned_cols=48 Identities=40% Similarity=0.812 Sum_probs=42.2
Q ss_pred CCEEEEEcccC-CCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE
Q 009910 156 GKKVLLVGGKT-DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206 (522)
Q Consensus 156 ~~~iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~ 206 (522)
+++||||||.+ ......+++|+||+.+++|+++. ++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57999999998 45667899999999999999984 69999999999864
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.84 E-value=3.8e-09 Score=74.33 Aligned_cols=47 Identities=38% Similarity=0.733 Sum_probs=32.2
Q ss_pred CCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCC
Q 009910 197 ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (522)
Q Consensus 197 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p 246 (522)
+|.+|+++.+ +++||||||.+..+..++++|+||+++++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 5899999998 5899999999988778999999999999999995 555
No 40
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.81 E-value=9.3e-07 Score=82.63 Aligned_cols=172 Identities=21% Similarity=0.280 Sum_probs=110.2
Q ss_pred CCccceEEEEE-C------CEEEEEcccCCCCCCceeEEEEECCCCc--------EEEeeecCCCCCCCcceEEEEEC--
Q 009910 145 PACRGHSLISW-G------KKVLLVGGKTDSGSDRVSVWTFDTETEC--------WSVVEAKGDIPVARSGHTVVRAS-- 207 (522)
Q Consensus 145 ~~r~~~~~~~~-~------~~iyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~~~~p~~r~~~~~~~~~-- 207 (522)
|+.+..+++.+ + ...+|.||.+.++.-...+|+....+.. ..+....|++|.+|++|++.++.
T Consensus 20 PPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~Sr 99 (337)
T PF03089_consen 20 PPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSR 99 (337)
T ss_pred CCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEEC
Confidence 34444566655 2 2456679998888777888888766432 33444568899999999998763
Q ss_pred --CEEEEEcccCCC-------------CCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCC--
Q 009910 208 --SVLILFGGEDGK-------------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-- 270 (522)
Q Consensus 208 --~~iyv~GG~~~~-------------~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~-- 270 (522)
..+++|||+..- -.....|+.+|++-...+.... ..+..+..+|.+..-+|. +|++||..-
T Consensus 100 GKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~-VYilGGHsl~s 177 (337)
T PF03089_consen 100 GKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDC-VYILGGHSLES 177 (337)
T ss_pred CcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCce-EEEEccEEccC
Confidence 368889998421 0133468889998877766532 156667888888888888 999999843
Q ss_pred CCCCCcEEEEEcCCC---cEEEeeeCCCCCCCccceEEEEE---CCEEEEEcccCCC
Q 009910 271 SKTLNDLYSLDFETM---IWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRK 321 (522)
Q Consensus 271 ~~~~~~v~~yd~~~~---~W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~ 321 (522)
......++++..+-- -+-....+ +....-.+|++. .+..+|+||+..+
T Consensus 178 d~Rpp~l~rlkVdLllGSP~vsC~vl---~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 178 DSRPPRLYRLKVDLLLGSPAVSCTVL---QGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred CCCCCcEEEEEEeecCCCceeEEEEC---CCCceEeeeeEeecCCCceEEEeccccc
Confidence 333445777654321 12222222 344444444443 4678899998643
No 41
>PLN02772 guanylate kinase
Probab=98.79 E-value=3.9e-08 Score=98.37 Aligned_cols=88 Identities=14% Similarity=0.274 Sum_probs=76.0
Q ss_pred CCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCc
Q 009910 144 IPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRK 222 (522)
Q Consensus 144 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 222 (522)
..++..|+++.+++++||+||.++.....+.+++||+.|++|......|..|.+|.+|+++++ +++|+|+++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 446778999999999999999887555788999999999999999988999999999999998 5799999877654
Q ss_pred cCcEEEEEcCCC
Q 009910 223 LNDLHMFDLKSL 234 (522)
Q Consensus 223 ~~~v~~yd~~t~ 234 (522)
-+++|.+...|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 277898887664
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.77 E-value=1.9e-08 Score=70.69 Aligned_cols=45 Identities=36% Similarity=0.641 Sum_probs=40.7
Q ss_pred CccceEEEEECCEEEEEcCc---CCCCCcccEEEEEcCCCcEEEcccc
Q 009910 88 PRFNHAAAVIGNKMIVVGGE---SGNGLLDDVQVLNFDRFSWTAASSK 132 (522)
Q Consensus 88 ~R~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~~ 132 (522)
||.+|++++++++||||||. ......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 4556689999999999999999874
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.77 E-value=2e-08 Score=70.57 Aligned_cols=44 Identities=32% Similarity=0.579 Sum_probs=39.8
Q ss_pred CCcceEEEEECCEEEEEccc--CCCCCccCcEEEEEcCCCcEEEee
Q 009910 197 ARSGHTVVRASSVLILFGGE--DGKRRKLNDLHMFDLKSLTWLPLH 240 (522)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~ 240 (522)
+|++|++++++++||||||. .......+++++||+++++|++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 58999999999999999999 444567899999999999999997
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.69 E-value=1.8e-08 Score=70.88 Aligned_cols=47 Identities=34% Similarity=0.715 Sum_probs=31.6
Q ss_pred CccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCC
Q 009910 146 ACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP 195 (522)
Q Consensus 146 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p 195 (522)
+|.+|+++.+ +++||||||.+......+++|+||+++++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 4788999998 5899999999887778899999999999999995 365
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.67 E-value=2.3e-06 Score=80.82 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=109.8
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCC----CcEEEeecCCCCCCCC
Q 009910 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS----LTWLPLHCTGTGPSPR 249 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~g~~p~~r 249 (522)
-..||+.+++++.+.. ..--++.+.+. -+|++++.||.... ...+..|++.+ ..|.+... .|..+|
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCCC
Confidence 5579999999998864 33333333333 47899999998653 35678888865 67988752 588999
Q ss_pred cceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC------CcEEEeeeCC-CCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET------MIWTRIKIRG-FHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (522)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~------~~W~~~~~~~-~~p~~r~~~~~~~~~~~iyi~GG~~~~~ 322 (522)
.+.++..+.+..++|+||... ..+.|-+.. ..|..+.... ..+...+-+.-+.-+++|++++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence 999999998888999999863 233443431 1122222110 112223333333348999999884
Q ss_pred CcCeEEEEECCCCce-EEeccCCCCCCCCCCCcEEEEEee------CCccEEEEEcC
Q 009910 323 RHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQH------KEKDFLVAFGG 372 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W-~~~~~~p~~~~~~r~~~~~~~~~~------~~~~~l~v~GG 372 (522)
+..+||..++++ +.++..|.....-....+++.+.. .-+..|+|+||
T Consensus 190 ---~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl~~~~~~~~~~evlvCGG 243 (243)
T PF07250_consen 190 ---GSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPLTDTPPNNYTAEVLVCGG 243 (243)
T ss_pred ---CcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecCccCCCCCCCeEEEEeCC
Confidence 356889999987 667766653212122334444443 12355666666
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.61 E-value=9.7e-08 Score=64.51 Aligned_cols=40 Identities=40% Similarity=0.781 Sum_probs=35.7
Q ss_pred CCCCccceEEEEECCEEEEEcCcC--CCCCcccEEEEEcCCC
Q 009910 85 KPIPRFNHAAAVIGNKMIVVGGES--GNGLLDDVQVLNFDRF 124 (522)
Q Consensus 85 ~p~~R~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~~~ 124 (522)
.|.+|.+|++++++++||||||.. ....++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999998 4667899999998763
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.58 E-value=1.3e-07 Score=63.87 Aligned_cols=41 Identities=39% Similarity=0.658 Sum_probs=36.6
Q ss_pred CCCCCcceEEEEECCEEEEEcccCC-CCCccCcEEEEEcCCC
Q 009910 194 IPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSL 234 (522)
Q Consensus 194 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~ 234 (522)
+|.+|.+|+++.++++||||||.+. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999994 6678999999998763
No 48
>smart00612 Kelch Kelch domain.
Probab=98.50 E-value=1.7e-07 Score=64.96 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=41.3
Q ss_pred EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECC
Q 009910 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (522)
Q Consensus 209 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 259 (522)
+||++||.... ..++++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999998763 56899999999999999987 8999999999988764
No 49
>smart00612 Kelch Kelch domain.
Probab=98.43 E-value=3.3e-07 Score=63.43 Aligned_cols=47 Identities=36% Similarity=0.610 Sum_probs=40.3
Q ss_pred EEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC
Q 009910 158 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 208 (522)
Q Consensus 158 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~ 208 (522)
+||++||... ....+++++||+.+++|+.++ +||.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999864 455788999999999999988 4999999999988764
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.23 E-value=8e-05 Score=70.49 Aligned_cols=148 Identities=19% Similarity=0.216 Sum_probs=94.1
Q ss_pred EEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCC----CcEEEeeec
Q 009910 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET----ECWSVVEAK 191 (522)
Q Consensus 116 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~ 191 (522)
-..||+.+++++.+... .-.=|.+++.. -++++++.||.... ...+..|++.+ ..|.+...
T Consensus 48 s~~yD~~tn~~rpl~v~----------td~FCSgg~~L-~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~- 112 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----------TDTFCSGGAFL-PDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN- 112 (243)
T ss_pred EEEEecCCCcEEeccCC----------CCCcccCcCCC-CCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc-
Confidence 45799999999988763 11223334332 37899999998652 23466788765 56887754
Q ss_pred CCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcC-C-----CcEEEeecC-CCCCCCCcceEEEEECCcEEE
Q 009910 192 GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK-S-----LTWLPLHCT-GTGPSPRSNHVAALYDDKNLL 263 (522)
Q Consensus 192 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~-t-----~~W~~~~~~-g~~p~~r~~~~~~~~~~~~ly 263 (522)
.|..+|...+++.+ +|+++|+||.... .+.|-|. . ..|..+... ...+..-+-+....-+++ |+
T Consensus 113 -~m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lF 184 (243)
T PF07250_consen 113 -DMQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LF 184 (243)
T ss_pred -cccCCCccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EE
Confidence 48899999998886 6899999998732 2333333 1 122222211 123333444444444555 99
Q ss_pred EEcCCCCCCCCCcEEEEEcCCCcE-EEeeeC
Q 009910 264 IFGGSSKSKTLNDLYSLDFETMIW-TRIKIR 293 (522)
Q Consensus 264 v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~ 293 (522)
+|+.. +-.+||..++++ +.++.+
T Consensus 185 i~an~-------~s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 185 IFANR-------GSIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EEEcC-------CcEEEeCCCCeEEeeCCCC
Confidence 99874 467889999976 666655
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.18 E-value=0.00085 Score=63.84 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=110.6
Q ss_pred eEEEEECCCCcEEEeeecCCCC-CCCcce-EEEEECC-----EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCC
Q 009910 174 SVWTFDTETECWSVVEAKGDIP-VARSGH-TVVRASS-----VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p-~~r~~~-~~~~~~~-----~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p 246 (522)
.+.++||.|++|..+++.. .+ .....+ ...-++. ++..+...... .....+++|+..++.|+.+... .+
T Consensus 15 ~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~--~~ 90 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPK-SRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECS--PP 90 (230)
T ss_pred cEEEECCCCCCEEecCCCC-CcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccC--CC
Confidence 5899999999999987411 11 001111 1112221 56666443211 1335789999999999998632 12
Q ss_pred CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE-eeeCCCCCCCc----cceEEEEECCEEEEEcccCCC
Q 009910 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPR----AGCCGVLCGTKWYIAGGGSRK 321 (522)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~iyi~GG~~~~ 321 (522)
........+.+++. +|-+.-.........|..||+.+.+|+. ++. |..+ .....+.++++|.++......
T Consensus 91 ~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~~~~~~ 165 (230)
T TIGR01640 91 HHPLKSRGVCINGV-LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLKQKKDT 165 (230)
T ss_pred CccccCCeEEECCE-EEEEEEECCCCCcEEEEEEEcccceEeeeeec----CccccccccceEEEEECCEEEEEEecCCC
Confidence 11112226667777 6665432211111269999999999995 533 2222 233455668999887654321
Q ss_pred CCcCeEEEEE-CCCCceEEeccCCCCCC-CCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 322 KRHAETLIFD-ILKGEWSVAITSPSSSV-TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 322 ~~~~~v~~yd-~~~~~W~~~~~~p~~~~-~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
..-+||+.+ -...+|+++-..+.... .....+....+.+ ++.|++.-... ...-+..||++++
T Consensus 166 -~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~--~g~I~~~~~~~--~~~~~~~y~~~~~ 230 (230)
T TIGR01640 166 -NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTD--KGEIVLCCEDE--NPFYIFYYNVGEN 230 (230)
T ss_pred -CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEee--CCEEEEEeCCC--CceEEEEEeccCC
Confidence 225789886 44667998766553211 1111112222322 24466554421 1113888998764
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.13 E-value=0.0014 Score=62.27 Aligned_cols=202 Identities=12% Similarity=0.116 Sum_probs=113.5
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC----C-EEEEEcccCCCCCCceeEEEEECCCCcEEEe
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG----K-KVLLVGGKTDSGSDRVSVWTFDTETECWSVV 188 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 188 (522)
..+.++||.+.+|..++..... ...+.+. ......+ . +|..+..... ......+++|+..+++|+.+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~------~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~ 85 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSR------RSNKESD-TYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTI 85 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCc------ccccccc-eEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCcccc
Confidence 5789999999999999752100 0001111 1111222 1 4555543211 11234689999999999998
Q ss_pred eecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEE-eecCCCCCCCC----cceEEEEECCcEEE
Q 009910 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPR----SNHVAALYDDKNLL 263 (522)
Q Consensus 189 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~r----~~~~~~~~~~~~ly 263 (522)
.+. .+........+.++|.||-+.-.... .....+..||+.+.+|.+ ++ +|..+ .....+.++++ |.
T Consensus 86 ~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~-L~ 157 (230)
T TIGR01640 86 ECS--PPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGK-LA 157 (230)
T ss_pred ccC--CCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCE-EE
Confidence 741 12111122266789999988754322 111269999999999995 54 34332 23456667776 66
Q ss_pred EEcCCCCCCCCCcEEEEE-cCCCcEEEeeeCCCCCCCccc----eEEEEECCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 264 IFGGSSKSKTLNDLYSLD-FETMIWTRIKIRGFHPSPRAG----CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 264 v~GG~~~~~~~~~v~~yd-~~~~~W~~~~~~~~~p~~r~~----~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
++...... ..-+||+++ -....|+++-..+.++.+... ...+..+++|++..... ...-+..||+.++
T Consensus 158 ~v~~~~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence 65443211 124688875 345679987665322222221 23344578888876531 1123888998764
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.89 E-value=0.032 Score=57.72 Aligned_cols=255 Identities=16% Similarity=0.139 Sum_probs=135.7
Q ss_pred CCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccc
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (522)
....|+.-...+ .+......+.++.+++||+.... ..++.||..+. .|+.-..... ...+...+....
T Consensus 44 ~~~~W~~~~g~g-~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~---~~~~~~~~~~~~ 113 (394)
T PRK11138 44 PTTVWSTSVGDG-VGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKD---GWFSKNKSALLS 113 (394)
T ss_pred cceeeEEEcCCC-CccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcc---cccccccccccc
Confidence 445687654211 11111223446678999998642 36899998764 6876433100 000000112223
Q ss_pred eEEEEECCEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEE
Q 009910 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (522)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 227 (522)
.+.+..+++||+.+.. ..++.+|.++++ |+.-.. .. ...+-++.++.+|+..+ ...++
T Consensus 114 ~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~ 173 (394)
T PRK11138 114 GGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKVA-----GE-ALSRPVVSDGLVLVHTS-------NGMLQ 173 (394)
T ss_pred cccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccCC-----Cc-eecCCEEECCEEEEECC-------CCEEE
Confidence 3456678899874321 249999998865 875431 11 12233456788887432 24589
Q ss_pred EEEcCCCc--EEEeecCCCCCC--CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCC--CCCC
Q 009910 228 MFDLKSLT--WLPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPSP 299 (522)
Q Consensus 228 ~yd~~t~~--W~~~~~~g~~p~--~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~--~p~~ 299 (522)
.+|+++.+ |+.-. ..|. .+...+-++.++. +|+..+ + ..++.+|++++ .|+.-...+. ....
T Consensus 174 ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~-v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 174 ALNESDGAVKWTVNL---DVPSLTLRGESAPATAFGG-AIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred EEEccCCCEeeeecC---CCCcccccCCCCCEEECCE-EEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchh
Confidence 99998765 87653 2221 1222233344454 555332 2 35888888765 4865322100 0000
Q ss_pred c---cceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCc--eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCC
Q 009910 300 R---AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 300 r---~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
| ...+-++.++.+|+.+. + ..++++|+.+.+ |+.-. . .. ...+..+ +.||+....
T Consensus 244 ~~~~~~~sP~v~~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~~--~----~~---~~~~~~~----~~vy~~~~~- 303 (394)
T PRK11138 244 RLVDVDTTPVVVGGVVYALAY-N-----GNLVALDLRSGQIVWKREY--G----SV---NDFAVDG----GRIYLVDQN- 303 (394)
T ss_pred cccccCCCcEEECCEEEEEEc-C-----CeEEEEECCCCCEEEeecC--C----Cc---cCcEEEC----CEEEEEcCC-
Confidence 1 11233456888887653 2 359999998764 87621 1 11 1122222 567776533
Q ss_pred CCCCCcEEEEEcccCC
Q 009910 375 KEPSNQVEVLSIEKNE 390 (522)
Q Consensus 375 ~~~~~~v~~y~~~~~~ 390 (522)
..+..+|+++.+
T Consensus 304 ----g~l~ald~~tG~ 315 (394)
T PRK11138 304 ----DRVYALDTRGGV 315 (394)
T ss_pred ----CeEEEEECCCCc
Confidence 358888887664
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.61 E-value=0.056 Score=55.86 Aligned_cols=228 Identities=16% Similarity=0.182 Sum_probs=123.8
Q ss_pred cceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCC
Q 009910 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD 167 (522)
Q Consensus 90 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 167 (522)
...+.++.+++||+.+. ...++.+|..+. .|+.-... ....+.+..++.+|+..+.
T Consensus 112 ~~~~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~--------------~~~ssP~v~~~~v~v~~~~-- 169 (394)
T PRK11138 112 LSGGVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVAG--------------EALSRPVVSDGLVLVHTSN-- 169 (394)
T ss_pred cccccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCCC--------------ceecCCEEECCEEEEECCC--
Confidence 33445667888887542 246899998764 68664331 0112334557888875432
Q ss_pred CCCCceeEEEEECCCCc--EEEeeecCCCCC--CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCC--cEEEeec
Q 009910 168 SGSDRVSVWTFDTETEC--WSVVEAKGDIPV--ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHC 241 (522)
Q Consensus 168 ~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~ 241 (522)
..++.+|+++++ |+.-.. .|. .+...+-++.++.+|+..+ ...++.+|+++. .|+.-..
T Consensus 170 -----g~l~ald~~tG~~~W~~~~~---~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~ 234 (394)
T PRK11138 170 -----GMLQALNESDGAVKWTVNLD---VPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRIS 234 (394)
T ss_pred -----CEEEEEEccCCCEeeeecCC---CCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccc
Confidence 249999999876 876432 221 1222233455677766432 134788888875 4864321
Q ss_pred C--CCCCCCC---cceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCCCCCccceEEEEECCEEEE
Q 009910 242 T--GTGPSPR---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLCGTKWYI 314 (522)
Q Consensus 242 ~--g~~p~~r---~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyi 314 (522)
. +.....| ...+-++.++. +|+.+. + ..++.+|+.++ .|+.-.. .. ...+..+++||+
T Consensus 235 ~~~~~~~~~~~~~~~~sP~v~~~~-vy~~~~-~-----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~ 299 (394)
T PRK11138 235 QPTGATEIDRLVDVDTTPVVVGGV-VYALAY-N-----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYL 299 (394)
T ss_pred cCCCccchhcccccCCCcEEECCE-EEEEEc-C-----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEE
Confidence 0 0000001 11233344554 777542 1 36999999876 4875321 11 123556889998
Q ss_pred EcccCCCCCcCeEEEEECCCC--ceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 315 AGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 315 ~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.... ..++.+|+.+. .|+.-.. ..+...+.++.+ ++||+... + ..++++|+.+.+
T Consensus 300 ~~~~------g~l~ald~~tG~~~W~~~~~------~~~~~~sp~v~~----g~l~v~~~-~----G~l~~ld~~tG~ 356 (394)
T PRK11138 300 VDQN------DRVYALDTRGGVELWSQSDL------LHRLLTAPVLYN----GYLVVGDS-E----GYLHWINREDGR 356 (394)
T ss_pred EcCC------CeEEEEECCCCcEEEccccc------CCCcccCCEEEC----CEEEEEeC-C----CEEEEEECCCCC
Confidence 7532 45999999876 4764211 111112223333 55665432 2 257778877765
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.38 E-value=0.16 Score=52.17 Aligned_cols=227 Identities=16% Similarity=0.170 Sum_probs=120.8
Q ss_pred eEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (522)
.+.++.++.+|+.+.. ..++.||+.+. .|+.-... ....+.+..++.+|+.+. +
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~-~--- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE--------------RLSGGVGADGGLVFVGTE-K--- 114 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC--------------CcccceEEcCCEEEEEcC-C---
Confidence 4456678888887631 46899998765 58654331 111233445777776432 2
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEeecCCCC
Q 009910 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTG 245 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~ 245 (522)
..++.+|..+++ |+... +.. ...+.+..++.+|+..+ ...++.+|+++.+ |+.-... +.
T Consensus 115 ---g~l~ald~~tG~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~ 177 (377)
T TIGR03300 115 ---GEVIALDAEDGKELWRAKL-----SSE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PA 177 (377)
T ss_pred ---CEEEEEECCCCcEeeeecc-----Cce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-Cc
Confidence 259999998765 87532 111 12233445777777532 2458999998754 8754311 10
Q ss_pred CCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCC--CCCCc---cceEEEEECCEEEEEccc
Q 009910 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPSPR---AGCCGVLCGTKWYIAGGG 318 (522)
Q Consensus 246 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~--~p~~r---~~~~~~~~~~~iyi~GG~ 318 (522)
...+...+.+..++. + ++|..+ ..++.+|++++ .|+.-...+. ....+ ...+.++.++.+|+...
T Consensus 178 ~~~~~~~sp~~~~~~-v-~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~- 249 (377)
T TIGR03300 178 LTLRGSASPVIADGG-V-LVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY- 249 (377)
T ss_pred eeecCCCCCEEECCE-E-EEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-
Confidence 001222233444543 4 444332 35899998765 4764322100 00001 12233445788887543
Q ss_pred CCCCCcCeEEEEECCCC--ceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 319 SRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 319 ~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+ ..+++||+++. .|+.-. + . ..+.+..+ +.||+... ...+.++|..+.+
T Consensus 250 ~-----g~l~a~d~~tG~~~W~~~~--~-----~--~~~p~~~~----~~vyv~~~-----~G~l~~~d~~tG~ 300 (377)
T TIGR03300 250 Q-----GRVAALDLRSGRVLWKRDA--S-----S--YQGPAVDD----NRLYVTDA-----DGVVVALDRRSGS 300 (377)
T ss_pred C-----CEEEEEECCCCcEEEeecc--C-----C--ccCceEeC----CEEEEECC-----CCeEEEEECCCCc
Confidence 2 35999999775 476521 1 1 11222222 56776543 2358888887664
No 56
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.33 E-value=0.12 Score=49.41 Aligned_cols=222 Identities=12% Similarity=0.055 Sum_probs=119.6
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+|+.-- ....++++++.+..-..... +. -.+++.. ++.+|+..... +
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~-------------~~--~~G~~~~~~~g~l~v~~~~~--------~ 62 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL-------------PG--PNGMAFDRPDGRLYVADSGG--------I 62 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES-------------SS--EEEEEEECTTSEEEEEETTC--------E
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec-------------CC--CceEEEEccCCEEEEEEcCc--------e
Confidence 477887742 23579999999987665443 11 2334443 68888875432 5
Q ss_pred EEEECCCCcEEEeeec--CCCCCCCcceEEEEECCEEEEEcccCCCCCcc--CcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 176 WTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKRRKL--NDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
..+|+.+++++.+... +..+..+..-.++.-++.||+---........ ..++++++. .+.+.+.. .+..|
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~p--- 136 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFP--- 136 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSE---
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccccc---
Confidence 6679999999987753 11133344434444467888742211111112 569999998 66665542 12111
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEeeeCCCCCCCc-cceEEEEE-CCEEEEEcccCCCCCcCe
Q 009910 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPR-AGCCGVLC-GTKWYIAGGGSRKKRHAE 326 (522)
Q Consensus 252 ~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~p~~r-~~~~~~~~-~~~iyi~GG~~~~~~~~~ 326 (522)
...+.. +++.+|+.- ...+.|++|++.... +.........+... .--++++- ++.||+..-.. ..
T Consensus 137 NGi~~s~dg~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~ 206 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GR 206 (246)
T ss_dssp EEEEEETTSSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TE
T ss_pred cceEECCcchheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CE
Confidence 233333 445577642 234569999986432 44322211112221 12233333 68999873211 45
Q ss_pred EEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEE
Q 009910 327 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (522)
Q Consensus 327 v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~ 370 (522)
|++||++...-..+.. |. . ..+.++++..+.+.|||.
T Consensus 207 I~~~~p~G~~~~~i~~-p~----~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 207 IVVFDPDGKLLREIEL-PV----P--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEETTSCEEEEEE--SS----S--SEEEEEEESTTSSEEEEE
T ss_pred EEEECCCccEEEEEcC-CC----C--CEEEEEEECCCCCEEEEE
Confidence 9999999665555552 21 1 345666655556677764
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.10 E-value=0.27 Score=46.52 Aligned_cols=186 Identities=17% Similarity=0.234 Sum_probs=107.5
Q ss_pred EEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCC
Q 009910 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (522)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 171 (522)
.+..++.+|+..+ ...++++|+.+. .|+.-.. .......+..++.||+..+.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~--------------~~~~~~~~~~~~~v~v~~~~------ 85 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLP--------------GPISGAPVVDGGRVYVGTSD------ 85 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEECS--------------SCGGSGEEEETTEEEEEETT------
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeecc--------------ccccceeeecccccccccce------
Confidence 3447888998842 467899998776 5766543 11222246778999887622
Q ss_pred ceeEEEEECCCCc--EEE-eeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEeecCCCCC
Q 009910 172 RVSVWTFDTETEC--WSV-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGP 246 (522)
Q Consensus 172 ~~~v~~yd~~t~~--W~~-~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p 246 (522)
+.++.+|..+++ |+. .......+ .+........++.+|+... ...+..+|+++.+ |.... ..+
T Consensus 86 -~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~---~~~ 153 (238)
T PF13360_consen 86 -GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPV---GEP 153 (238)
T ss_dssp -SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEES---STT
T ss_pred -eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeec---CCC
Confidence 159999988876 883 43211111 2333444555777777643 3568999998765 76643 222
Q ss_pred CCCc-------ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEeeeCCCCCCCccceEEEEECCEEEEEcc
Q 009910 247 SPRS-------NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (522)
Q Consensus 247 ~~r~-------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG 317 (522)
.... ..+..++.+..+|+..+.. .+..+|..++. |+.. .. . ........++.+|+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~l~~~~- 219 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGTLYVTS- 219 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-CC-----C-ccCCceeeCCEEEEEe-
Confidence 1111 1123333433588876543 26777998886 7333 21 1 1111334477777776
Q ss_pred cCCCCCcCeEEEEECCCCc
Q 009910 318 GSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 318 ~~~~~~~~~v~~yd~~~~~ 336 (522)
.+ ..++++|+++.+
T Consensus 220 ~~-----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 220 SD-----GRLYALDLKTGK 233 (238)
T ss_dssp TT-----TEEEEEETTTTE
T ss_pred CC-----CEEEEEECCCCC
Confidence 32 459999999874
No 58
>PRK13684 Ycf48-like protein; Provisional
Probab=97.01 E-value=0.34 Score=48.83 Aligned_cols=244 Identities=12% Similarity=0.142 Sum_probs=119.1
Q ss_pred CCCceEEeeecCCCCCCc-cceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 009910 72 NSENWMVLSIAGDKPIPR-FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (522)
...+|++.... .|... ...++...++..|+.|. . ..+++=+-...+|+.+... ...+. ...
T Consensus 74 gG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~-~-----g~i~~S~DgG~tW~~~~~~---------~~~~~-~~~ 135 (334)
T PRK13684 74 GGETWEERSLD--LPEENFRLISISFKGDEGWIVGQ-P-----SLLLHTTDGGKNWTRIPLS---------EKLPG-SPY 135 (334)
T ss_pred CCCCceECccC--CcccccceeeeEEcCCcEEEeCC-C-----ceEEEECCCCCCCeEccCC---------cCCCC-Cce
Confidence 45789987532 22222 22233334555676652 1 2234422234699988641 01111 112
Q ss_pred EEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEE-
Q 009910 151 SLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM- 228 (522)
Q Consensus 151 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~- 228 (522)
.+..+ ++.+++.|... .+++-+-.-.+|+.+.. +..-..+.+....+..++..|..+. ++.
T Consensus 136 ~i~~~~~~~~~~~g~~G-------~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G~------i~~s 198 (334)
T PRK13684 136 LITALGPGTAEMATNVG-------AIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRGN------FYST 198 (334)
T ss_pred EEEEECCCcceeeeccc-------eEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCce------EEEE
Confidence 23333 35566665432 26666656678998763 2222344455444444444333222 222
Q ss_pred EEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEE--EcCCCcEEEeeeCCCCCCCccceEEE
Q 009910 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL--DFETMIWTRIKIRGFHPSPRAGCCGV 306 (522)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~p~~r~~~~~~ 306 (522)
.|....+|+.+. .+..+.-.+++...+..++++|... ..++ +-...+|+.+... ........++++
T Consensus 199 ~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~ 266 (334)
T PRK13684 199 WEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIP-EITNGYGYLDLA 266 (334)
T ss_pred cCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCC-ccccccceeeEE
Confidence 234446799884 3444555555555554478877432 2334 2234589976431 000111123333
Q ss_pred EE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCC
Q 009910 307 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 307 ~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
.. ++.+|++|... .++.-.....+|+.+...+ . .+...+.++... .+..|+.|..+
T Consensus 267 ~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~-~--~~~~~~~~~~~~---~~~~~~~G~~G 323 (334)
T PRK13684 267 YRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGE-E--VPSNFYKIVFLD---PEKGFVLGQRG 323 (334)
T ss_pred EcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCC-C--CCcceEEEEEeC---CCceEEECCCc
Confidence 33 56788887542 2444444567999865311 1 122333444443 24578777754
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.87 E-value=0.67 Score=47.45 Aligned_cols=187 Identities=16% Similarity=0.181 Sum_probs=101.0
Q ss_pred EEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCC
Q 009910 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (522)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 171 (522)
.++.++.+|+.+. ...++.+|+.+. .|+..... ....+.+..++.+|+..+.
T Consensus 101 p~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~~------ 154 (377)
T TIGR03300 101 VGADGGLVFVGTE------KGEVIALDAEDGKELWRAKLSS--------------EVLSPPLVANGLVVVRTND------ 154 (377)
T ss_pred eEEcCCEEEEEcC------CCEEEEEECCCCcEeeeeccCc--------------eeecCCEEECCEEEEECCC------
Confidence 4445677776542 247899998764 58654321 0112334457788775431
Q ss_pred ceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCC--cEEEeecCCCCCC
Q 009910 172 RVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPS 247 (522)
Q Consensus 172 ~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~ 247 (522)
..++.+|+++++ |+........ ..+...+.+..++.+|+ |.. ...+..+|+.+. .|+.-. ..|.
T Consensus 155 -g~l~a~d~~tG~~~W~~~~~~~~~-~~~~~~sp~~~~~~v~~-~~~------~g~v~ald~~tG~~~W~~~~---~~~~ 222 (377)
T TIGR03300 155 -GRLTALDAATGERLWTYSRVTPAL-TLRGSASPVIADGGVLV-GFA------GGKLVALDLQTGQPLWEQRV---ALPK 222 (377)
T ss_pred -CeEEEEEcCCCceeeEEccCCCce-eecCCCCCEEECCEEEE-ECC------CCEEEEEEccCCCEeeeecc---ccCC
Confidence 249999998765 8754321000 11222334455665554 432 135889998775 476432 1111
Q ss_pred C-----C---cceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCCCCCccceEEEEECCEEEEEcc
Q 009910 248 P-----R---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (522)
Q Consensus 248 ~-----r---~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG 317 (522)
. + ...+.++.++ .+|+... ...++.||++++ .|+.-. + ...+.++.+++||+...
T Consensus 223 g~~~~~~~~~~~~~p~~~~~-~vy~~~~------~g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGG-QVYAVSY------QGRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA 287 (377)
T ss_pred CCCchhhhhccCCccEEECC-EEEEEEc------CCEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC
Confidence 1 1 1122233344 4776532 235999998765 365431 1 11233456889988742
Q ss_pred cCCCCCcCeEEEEECCCC--ceEE
Q 009910 318 GSRKKRHAETLIFDILKG--EWSV 339 (522)
Q Consensus 318 ~~~~~~~~~v~~yd~~~~--~W~~ 339 (522)
...++++|..+. .|+.
T Consensus 288 ------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 ------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ------CCeEEEEECCCCcEEEcc
Confidence 145999998775 4765
No 60
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.85 E-value=0.57 Score=46.25 Aligned_cols=258 Identities=17% Similarity=0.198 Sum_probs=117.0
Q ss_pred CCCceEEeeecCCCCCCccceEEEEEC-CEEEEEcCcCCCCCcccEEEEEcC-CCcEEEcccccccCCCCCCCCCC-Ccc
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIP-ACR 148 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~-~r~ 148 (522)
....|+.+. .|....-..+..++ ++-|++|-. ....-..+ ..+|+...... ..+ ...
T Consensus 4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~---------~~~~~~~ 63 (302)
T PF14870_consen 4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDL---------DNPFDYH 63 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE--------------S-----E
T ss_pred cCCCcEEee----cCCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCC---------Cccceee
Confidence 678899996 55555555555555 678888742 12222223 36899887521 111 223
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEE
Q 009910 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLH 227 (522)
Q Consensus 149 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 227 (522)
..++...++..|+.|-.. -++.-.-.-.+|++++....+| -..+.+.. -++.++++|.. ..++
T Consensus 64 l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~~~lp--gs~~~i~~l~~~~~~l~~~~-------G~iy 127 (302)
T PF14870_consen 64 LNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLSSKLP--GSPFGITALGDGSAELAGDR-------GAIY 127 (302)
T ss_dssp EEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE----TT-S--S-EEEEEEEETTEEEEEETT---------EE
T ss_pred EEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecCCCCC--CCeeEEEEcCCCcEEEEcCC-------CcEE
Confidence 344455678899886431 1444444567899987422233 33333443 45677777632 2344
Q ss_pred EEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEE-EEEcCCCcEEEeeeCCCCCCCccceEEE
Q 009910 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY-SLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (522)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~-~yd~~~~~W~~~~~~~~~p~~r~~~~~~ 306 (522)
+=.-.-.+|+.+.. +.......+....+..+++++... .++ ..|+....|+..... ..|.-.++.
T Consensus 128 ~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G------~~~~s~~~G~~~w~~~~r~----~~~riq~~g 193 (302)
T PF14870_consen 128 RTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSRG------NFYSSWDPGQTTWQPHNRN----SSRRIQSMG 193 (302)
T ss_dssp EESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETTS------SEEEEE-TT-SS-EEEE------SSS-EEEEE
T ss_pred EeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECcc------cEEEEecCCCccceEEccC----ccceehhce
Confidence 44445578998852 112222234445565455555322 344 568888889988763 445555554
Q ss_pred EE-CCEEEEEcccCCCCCcCeEEEEE--CCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 009910 307 LC-GTKWYIAGGGSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (522)
Q Consensus 307 ~~-~~~iyi~GG~~~~~~~~~v~~yd--~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (522)
.. ++.++++. ..+ .++.-+ ....+|++... | ....++...-+.......+++.||.+ .+++
T Consensus 194 f~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~-~----~~~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~ 257 (302)
T PF14870_consen 194 FSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPII-P----IKTNGYGILDLAYRPPNEIWAVGGSG-----TLLV 257 (302)
T ss_dssp E-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B--T----TSS--S-EEEEEESSSS-EEEEESTT------EEE
T ss_pred ecCCCCEEEEe-CCc-----EEEEccCCCCccccccccC-C----cccCceeeEEEEecCCCCEEEEeCCc-----cEEE
Confidence 44 66777765 222 255555 45567887332 1 22344554444444557799999975 2444
Q ss_pred EEcccCCccccc
Q 009910 384 LSIEKNESSMGR 395 (522)
Q Consensus 384 y~~~~~~w~~~~ 395 (522)
-.=..++|....
T Consensus 258 S~DgGktW~~~~ 269 (302)
T PF14870_consen 258 STDGGKTWQKDR 269 (302)
T ss_dssp ESSTTSS-EE-G
T ss_pred eCCCCccceECc
Confidence 444456787763
No 61
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.67 E-value=0.77 Score=45.31 Aligned_cols=244 Identities=16% Similarity=0.239 Sum_probs=108.9
Q ss_pred CCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceE
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS 151 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~ 151 (522)
-..+|+.+....+.+......++...++..|+.|-. .-+++-.-...+|++++.. .+.|.. .+.
T Consensus 45 GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~---------~~lpgs-~~~ 108 (302)
T PF14870_consen 45 GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLS---------SKLPGS-PFG 108 (302)
T ss_dssp TTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE-------------TT-SS--EEE
T ss_pred CCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecC---------CCCCCC-eeE
Confidence 667899886322222122333445567889988731 1123322245699998742 122322 233
Q ss_pred EEE-ECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEE
Q 009910 152 LIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMF 229 (522)
Q Consensus 152 ~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~y 229 (522)
+.. -++.++++|... .+|+-.-.-.+|+.+.. +..-.-..+.. -++++++++-... -....
T Consensus 109 i~~l~~~~~~l~~~~G-------~iy~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G~------~~~s~ 171 (302)
T PF14870_consen 109 ITALGDGSAELAGDRG-------AIYRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSRGN------FYSSW 171 (302)
T ss_dssp EEEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETTSS------EEEEE
T ss_pred EEEcCCCcEEEEcCCC-------cEEEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECccc------EEEEe
Confidence 333 456777776432 37766666678998763 11112222233 3567666653221 12356
Q ss_pred EcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEE--cCCCcEEEeeeCCCCCCCccceE---
Q 009910 230 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD--FETMIWTRIKIRGFHPSPRAGCC--- 304 (522)
Q Consensus 230 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~p~~r~~~~--- 304 (522)
|+....|+... .+..|.-.++....+..+++.. ..+ .+..=+ ....+|.+... |....++.
T Consensus 172 ~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~----~~~~~~~~~ld 237 (302)
T PF14870_consen 172 DPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPII----PIKTNGYGILD 237 (302)
T ss_dssp -TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B-----TTSS--S-EEE
T ss_pred cCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccC----CcccCceeeEE
Confidence 78888899984 4556666677766666576654 211 244444 34567777432 33223332
Q ss_pred EEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCC
Q 009910 305 GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 305 ~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
++.. ++.+++.||... +++=.-..++|++...... .+--.+.++.+. .++-||+|..+
T Consensus 238 ~a~~~~~~~wa~gg~G~------l~~S~DgGktW~~~~~~~~---~~~n~~~i~f~~---~~~gf~lG~~G 296 (302)
T PF14870_consen 238 LAYRPPNEIWAVGGSGT------LLVSTDGGKTWQKDRVGEN---VPSNLYRIVFVN---PDKGFVLGQDG 296 (302)
T ss_dssp EEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGTT---SSS---EEEEEE---TTEEEEE-STT
T ss_pred EEecCCCCEEEEeCCcc------EEEeCCCCccceECccccC---CCCceEEEEEcC---CCceEEECCCc
Confidence 3333 678999888542 5555556789999764221 222234555554 24578888654
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.52 E-value=0.035 Score=54.10 Aligned_cols=123 Identities=24% Similarity=0.330 Sum_probs=75.9
Q ss_pred EcccCC-CCC-CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEE
Q 009910 162 VGGKTD-SGS-DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (522)
Q Consensus 162 ~GG~~~-~~~-~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 238 (522)
+||.-. .+. ....+-.||+.+.+|..+.. .+ .. .-.++... +++||+.|-.+..+.....+-.||.++.+|+.
T Consensus 3 VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~--~i-~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 3 VGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN--GI-SG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred EeeecCCCCCcCCCEEEEEECCCCEeecCCC--Cc-eE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee
Confidence 455433 332 46789999999999998763 11 11 11223333 57888877665554345679999999999998
Q ss_pred eecC--CCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeee
Q 009910 239 LHCT--GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 239 ~~~~--g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 292 (522)
+... ..+|.+.........+...+++.|.... -..-+..|| ..+|+.+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecC--CCceEEEEc--CCceEeccc
Confidence 8741 2456554333333334445787776522 233466665 778999876
No 63
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.35 E-value=1.1 Score=43.48 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=87.6
Q ss_pred EEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEE
Q 009910 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (522)
Q Consensus 100 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 179 (522)
.+|+.++.. +.+.+||+.+.+-...-.. .... ...+....+..+|+.++.. ..+..||
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~----------~~~~-~~l~~~~dg~~l~~~~~~~------~~v~~~d 59 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPV----------GQRP-RGITLSKDGKLLYVCASDS------DTIQVID 59 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEEC----------CCCC-CceEECCCCCEEEEEECCC------CeEEEEE
Confidence 466666533 4788899877653222211 0001 1111111234577776532 3488999
Q ss_pred CCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE
Q 009910 180 TETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (522)
Q Consensus 180 ~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (522)
+.+.+....-+. ...+ ..++.. ++.+|+.++.+ +.+.+||+.+.+-... .+......+++..
T Consensus 60 ~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~-----~~~~~~~~~~~~~ 123 (300)
T TIGR03866 60 LATGEVIGTLPS--GPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAE-----IPVGVEPEGMAVS 123 (300)
T ss_pred CCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeE-----eeCCCCcceEEEC
Confidence 988776432211 1111 122222 34566654322 3588999987542211 1111112234444
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCce
Q 009910 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (522)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W 337 (522)
.+..+++++..+. +.++.||..+..-......+. +..+.+..-+++.+++++... ..+.+||+.+.+.
T Consensus 124 ~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 124 PDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred CCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 3433566554321 246677876654322211111 111222222454444443222 3488999987654
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.18 E-value=0.17 Score=51.05 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=76.1
Q ss_pred ECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCcc----CcEEEE-
Q 009910 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKL----NDLHMF- 229 (522)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~v~~y- 229 (522)
.+++|+.++... .+.+||+++..-...+ .++.+.....++.++++||++.......... ...+.+
T Consensus 75 ~gskIv~~d~~~-------~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQSG-------RTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCCC-------CeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 489999886541 2889999999877655 3666666667777899999998764331110 144454
Q ss_pred -E--------cCCCcEEEeecCCCCCCCCcc-------eEEEEECCcEEEE-EcCCCCCCCCCcEEEEEcCCCcEEEeee
Q 009910 230 -D--------LKSLTWLPLHCTGTGPSPRSN-------HVAALYDDKNLLI-FGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 230 -d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~~~~~lyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 292 (522)
+ .....|..++ +.|..+.. .+-+++++..|+| .-|.. ...|.||.++.+|+++..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 3 2234677775 33333221 2333446666777 33221 248999999999999965
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.08 E-value=0.32 Score=47.46 Aligned_cols=122 Identities=17% Similarity=0.299 Sum_probs=72.5
Q ss_pred Eccc-CCCCC-ccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCC-CCCcEEEEEcCCCcEEE
Q 009910 213 FGGE-DGKRR-KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTR 289 (522)
Q Consensus 213 ~GG~-~~~~~-~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~ 289 (522)
+||. +..+. ....+=.||+.+.+|..+. .--.. .-.++...++..+|+.|-..... ....+..||.++.+|+.
T Consensus 3 VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g---~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 3 VGGSFTSAGSLPCPGLCLYDTDNSQWSSPG---NGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred EeeecCCCCCcCCCEEEEEECCCCEeecCC---CCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee
Confidence 4554 43332 4677889999999999985 22111 12233334555578777553322 45579999999999999
Q ss_pred eeeC--CCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 290 IKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 290 ~~~~--~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
+... ...|.+-........ .+.+++.|.... ...-+..| +..+|+.+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecC--CCceEEEE--cCCceEeccc
Confidence 8762 123433222222222 346777776522 23345566 4678999875
No 66
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.05 E-value=0.2 Score=50.66 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=75.0
Q ss_pred ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCC-----cEEEE
Q 009910 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN-----DLYSL 280 (522)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~-----~v~~y 280 (522)
.+++|+.++.. ..+.+||.++..-...+ .++.+.....++.++++ ||++.......... .++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 58899998554 33789999999877665 56666666777888888 99998763321111 33333
Q ss_pred --E--------cCCCcEEEeeeCCCCCCCccc-------eEEEEE-CCEEEE-EcccCCCCCcCeEEEEECCCCceEEec
Q 009910 281 --D--------FETMIWTRIKIRGFHPSPRAG-------CCGVLC-GTKWYI-AGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 281 --d--------~~~~~W~~~~~~~~~p~~r~~-------~~~~~~-~~~iyi-~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
+ ...-.|+.+++. |..+.. .+-+++ +..|+| +-|.. .-+|.||..+.+|+++.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 4 223367776543 333222 222344 667887 44322 22899999999999986
Q ss_pred c
Q 009910 342 T 342 (522)
Q Consensus 342 ~ 342 (522)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 3
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.38 Score=48.69 Aligned_cols=193 Identities=17% Similarity=0.226 Sum_probs=100.7
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 178 (522)
-.+.+.+|.++ .+.+|-.+..+=..+..+- +.--+.........+...++++|.. .-+|.|
T Consensus 225 ~plllvaG~d~-----~lrifqvDGk~N~~lqS~~--------l~~fPi~~a~f~p~G~~~i~~s~rr------ky~ysy 285 (514)
T KOG2055|consen 225 APLLLVAGLDG-----TLRIFQVDGKVNPKLQSIH--------LEKFPIQKAEFAPNGHSVIFTSGRR------KYLYSY 285 (514)
T ss_pred CceEEEecCCC-----cEEEEEecCccChhheeee--------eccCccceeeecCCCceEEEecccc------eEEEEe
Confidence 34888888764 3445544443333444321 0011111122222233377777753 248999
Q ss_pred ECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEEC
Q 009910 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258 (522)
Q Consensus 179 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~ 258 (522)
|+.+.+-+++.+...++..-...-.+..++.++++-|..+ .++.+...|+.|-.-- .++......+. .-+
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~---KieG~v~~~~f-sSd 355 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSF---KIEGVVSDFTF-SSD 355 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhee---eeccEEeeEEE-ecC
Confidence 9999999988865444422222222334455666666543 3777777788775321 22222222222 245
Q ss_pred CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 259 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 259 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
+++|++.||++ .||++|+.++.-...-.. --.-.+-+.|. .++.++.+|-..+- |-+||..+
T Consensus 356 sk~l~~~~~~G------eV~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~ylA~GS~~Gi-----VNIYd~~s 418 (514)
T KOG2055|consen 356 SKELLASGGTG------EVYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGSYLATGSDSGI-----VNIYDGNS 418 (514)
T ss_pred CcEEEEEcCCc------eEEEEecCCcceEEEEee---cCccceeeeeecCCCceEEeccCcce-----EEEeccch
Confidence 57789998864 699999988743322221 11223333332 36665555543332 45676443
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.94 E-value=0.52 Score=47.73 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=88.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec--CCCCCCCcceEEEEECCE-EEEEcccCCCCCccCcEEEEEcC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRASSV-LILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
...+.+.+|++. .-.+|..|-+++. .+.+. ...|.. . +...-+|. .++++|+. .-++.||+.
T Consensus 224 ~~plllvaG~d~----~lrifqvDGk~N~--~lqS~~l~~fPi~--~-a~f~p~G~~~i~~s~rr------ky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDG----TLRIFQVDGKVNP--KLQSIHLEKFPIQ--K-AEFAPNGHSVIFTSGRR------KYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCC----cEEEEEecCccCh--hheeeeeccCccc--e-eeecCCCceEEEecccc------eEEEEeecc
Confidence 356888999864 3347777777776 23220 012211 1 11122444 77777653 348999999
Q ss_pred CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEE
Q 009910 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312 (522)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i 312 (522)
+.+-+++.....++.+-...-.+...+. ++++-|.++ .|+.+...++.|-.--.+ +..-...+-...+.+|
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G-----~I~lLhakT~eli~s~Ki---eG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNG-----HIHLLHAKTKELITSFKI---EGVVSDFTFSSDSKEL 359 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCC-eEEEcccCc-----eEEeehhhhhhhhheeee---ccEEeeEEEecCCcEE
Confidence 9999998765555543333344555666 566655543 488888888887533222 1111111111224567
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceE
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGEWS 338 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~W~ 338 (522)
++.||.. +||++|+..+.-.
T Consensus 360 ~~~~~~G------eV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 360 LASGGTG------EVYVWNLRQNSCL 379 (514)
T ss_pred EEEcCCc------eEEEEecCCcceE
Confidence 7777753 5999999887433
No 69
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.82 E-value=3.3 Score=44.17 Aligned_cols=144 Identities=13% Similarity=0.138 Sum_probs=74.0
Q ss_pred CCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccc
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (522)
.+..|+.-.. . ......+.++.++.||+.... ..++.+|..+. .|+.-....... ..+....
T Consensus 39 ~~~~W~~~~~--~--~~~~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~------~~~~~~~ 102 (488)
T cd00216 39 LKVAWTFSTG--D--ERGQEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADR------GCCDVVN 102 (488)
T ss_pred ceeeEEEECC--C--CCCcccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccc------ccccccc
Confidence 4457765321 1 123334456778999986542 57899998864 687644321000 0001111
Q ss_pred eEEEEEC-CEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCC---Ccc
Q 009910 150 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKL 223 (522)
Q Consensus 150 ~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~ 223 (522)
...+..+ ++||+... ...++.+|.+|++ |+.-......+......+.++.++.+|+ |..+... ...
T Consensus 103 ~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~ 174 (488)
T cd00216 103 RGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVR 174 (488)
T ss_pred CCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCC
Confidence 1234445 78886432 1258999998865 8754320000000122334455666654 4322210 123
Q ss_pred CcEEEEEcCCCc--EEEe
Q 009910 224 NDLHMFDLKSLT--WLPL 239 (522)
Q Consensus 224 ~~v~~yd~~t~~--W~~~ 239 (522)
..++.||.++.+ |+.-
T Consensus 175 g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 175 GALRAYDVETGKLLWRFY 192 (488)
T ss_pred cEEEEEECCCCceeeEee
Confidence 568999998754 8754
No 70
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.58 E-value=3.8 Score=43.17 Aligned_cols=148 Identities=12% Similarity=0.127 Sum_probs=80.5
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
..+|.+|+.+++-+.+.. .+......+..-.+..|++....++ ..+++++|+.+.+.+.+... . .....
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~-~~~~~ 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH---R-AIDTE 310 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---C-CCccc
Confidence 469999999887766652 2221111111112345655433222 25799999999988877521 1 11111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEEC-CEEEEEcccCCCCCcCeEEEEE
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyi~GG~~~~~~~~~v~~yd 331 (522)
....-+++.|++.....+ ..++|.+|+++++++++...+.. ....+..-+ +.|++.+ ... ...+++.+|
T Consensus 311 p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~-~~~--g~~~I~~~d 380 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVN-RTN--GKFNIARQD 380 (448)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEE-ecC--CceEEEEEE
Confidence 122234554544432222 25799999999999888542211 111112224 4555543 222 234799999
Q ss_pred CCCCceEEec
Q 009910 332 ILKGEWSVAI 341 (522)
Q Consensus 332 ~~~~~W~~~~ 341 (522)
+.+...+.+.
T Consensus 381 l~~g~~~~lt 390 (448)
T PRK04792 381 LETGAMQVLT 390 (448)
T ss_pred CCCCCeEEcc
Confidence 9998887765
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.55 E-value=2.3 Score=43.52 Aligned_cols=216 Identities=18% Similarity=0.225 Sum_probs=110.5
Q ss_pred ECCEEEEEcCcCCCCCcccEEEEEcCCCc-EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeE
Q 009910 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 97 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 175 (522)
-+++++..|+.+ .-|.+||..+.. -+.+.. ...+...--....++.++++|+-+. .+
T Consensus 78 ~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~a-----------h~apv~~~~f~~~d~t~l~s~sDd~------v~ 135 (487)
T KOG0310|consen 78 SDGRLLAAGDES-----GHVKVFDMKSRVILRQLYA-----------HQAPVHVTKFSPQDNTMLVSGSDDK------VV 135 (487)
T ss_pred cCCeEEEccCCc-----CcEEEeccccHHHHHHHhh-----------ccCceeEEEecccCCeEEEecCCCc------eE
Confidence 368999999866 468899955421 111111 0111122233456889999987542 23
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCCCcceEE
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~g~~p~~r~~~~~ 254 (522)
-.+|..+.. ......+.--.-|.+ ++...++.|++-||+++. +-.||..+. .|..-- .-..|.. .+
T Consensus 136 k~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~el-nhg~pVe----~v 202 (487)
T KOG0310|consen 136 KYWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVEL-NHGCPVE----SV 202 (487)
T ss_pred EEEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEeccCCceeEEe-cCCCcee----eE
Confidence 444555554 233322222222332 333457889999999875 677888776 443321 1122221 23
Q ss_pred EEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccce-----EEEEE-CCEEEEEcccCCCCCcCeE
Q 009910 255 ALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-----CGVLC-GTKWYIAGGGSRKKRHAET 327 (522)
Q Consensus 255 ~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~-----~~~~~-~~~iyi~GG~~~~~~~~~v 327 (522)
+.+.+ ..|...|| |.+-++|+.++. ..+..+..| |.... ++.=.+.||.++. +
T Consensus 203 l~lpsgs~iasAgG-------n~vkVWDl~~G~--------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----V 262 (487)
T KOG0310|consen 203 LALPSGSLIASAGG-------NSVKVWDLTTGG--------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-----V 262 (487)
T ss_pred EEcCCCCEEEEcCC-------CeEEEEEecCCc--------eehhhhhcccceEEEEEeecCCceEeecccccc-----e
Confidence 44444 54556666 467788876431 122222212 12222 4466677777654 7
Q ss_pred EEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC
Q 009910 328 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (522)
Q Consensus 328 ~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 376 (522)
-+||. ..|+.+-.... +.+- .++.+.. .+.-+++|..++.
T Consensus 263 KVfd~--t~~Kvv~s~~~--~~pv--Lsiavs~---dd~t~viGmsnGl 302 (487)
T KOG0310|consen 263 KVFDT--TNYKVVHSWKY--PGPV--LSIAVSP---DDQTVVIGMSNGL 302 (487)
T ss_pred EEEEc--cceEEEEeeec--ccce--eeEEecC---CCceEEEecccce
Confidence 88984 44666553221 1222 2333332 3456778877653
No 72
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.46 E-value=2.3 Score=39.97 Aligned_cols=211 Identities=18% Similarity=0.240 Sum_probs=114.5
Q ss_pred cEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceE--EEEECCEEEEEcccCCCCCCceeEEEEECCCCc--EEEe
Q 009910 115 DVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHS--LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVV 188 (522)
Q Consensus 115 ~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 188 (522)
.+..+|+.+. .|+.-.. . ...+.. .+..++.+|+..+ ...++.+|..+++ |+.-
T Consensus 4 ~l~~~d~~tG~~~W~~~~~------------~-~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG------------P-GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp EEEEEETTTTEEEEEEECS------------S-SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEECC------------C-CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEee
Confidence 5678888664 5766321 1 112222 4447899998842 2359999998886 7654
Q ss_pred eecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEE-eecCCCCCCC-CcceEEEEECCcEEEE
Q 009910 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLP-LHCTGTGPSP-RSNHVAALYDDKNLLI 264 (522)
Q Consensus 189 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~-~~~~g~~p~~-r~~~~~~~~~~~~lyv 264 (522)
. +. +.....+..++.+|+..+ -+.++.+|..+.+ |+. ... ..+.+ +......+. +..+|+
T Consensus 64 ~-----~~-~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 127 (238)
T PF13360_consen 64 L-----PG-PISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVD-GDRLYV 127 (238)
T ss_dssp C-----SS-CGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEE-TTEEEE
T ss_pred c-----cc-cccceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEe-cCEEEE
Confidence 2 22 222224677899988751 1369999987754 984 431 11111 222233333 443555
Q ss_pred EcCCCCCCCCCcEEEEEcCCCc--EEEeeeCCCCCC-----CccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCc-
Q 009910 265 FGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPS-----PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE- 336 (522)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~p~-----~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~- 336 (522)
... ...++.+|+++++ |+.-...+.... .......+..++.+|+..+... +..+|..+.+
T Consensus 128 ~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~ 195 (238)
T PF13360_consen 128 GTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEK 195 (238)
T ss_dssp EET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEE
T ss_pred Eec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCE
Confidence 442 3469999998764 666432211000 0111233334678888776432 6667999986
Q ss_pred -eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 337 -WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 337 -W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
|+... . . ....... ..+.||+.. . ...+.++|+++.+
T Consensus 196 ~w~~~~--~-----~---~~~~~~~--~~~~l~~~~-~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 196 LWSKPI--S-----G---IYSLPSV--DGGTLYVTS-S----DGRLYALDLKTGK 233 (238)
T ss_dssp EEEECS--S---------ECECEEC--CCTEEEEEE-T----TTEEEEEETTTTE
T ss_pred EEEecC--C-----C---ccCCcee--eCCEEEEEe-C----CCEEEEEECCCCC
Confidence 85421 1 1 1111111 235566655 2 2369999998875
No 73
>PRK13684 Ycf48-like protein; Provisional
Probab=95.28 E-value=3.7 Score=41.33 Aligned_cols=243 Identities=16% Similarity=0.143 Sum_probs=119.1
Q ss_pred CCCCceEEeeecCCCCCCccceEEEEEC-CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc
Q 009910 71 GNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (522)
Q Consensus 71 ~~~~~W~~l~~~~~~p~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (522)
.....|++.. .|.......++..+ +..|++|-. ..+++=.-...+|+..... .+......
T Consensus 32 ~~~~~W~~~~----~~~~~~l~~v~F~d~~~g~avG~~------G~il~T~DgG~tW~~~~~~---------~~~~~~~l 92 (334)
T PRK13684 32 LSSSPWQVID----LPTEANLLDIAFTDPNHGWLVGSN------RTLLETNDGGETWEERSLD---------LPEENFRL 92 (334)
T ss_pred ccCCCcEEEe----cCCCCceEEEEEeCCCcEEEEECC------CEEEEEcCCCCCceECccC---------Ccccccce
Confidence 4667899885 34444444455555 567777731 1233322234689987642 11111112
Q ss_pred eEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEE
Q 009910 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 228 (522)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 228 (522)
.++...++..|+.|.. ..+++=+-.-.+|+.+......|. ....+..+ ++.+++.|.. ..+++
T Consensus 93 ~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~-------G~i~~ 156 (334)
T PRK13684 93 ISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV-------GAIYR 156 (334)
T ss_pred eeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc-------ceEEE
Confidence 2333335566766532 124443333468998863111222 22223333 3456665432 23455
Q ss_pred EEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEE-EcCCCcEEEeeeCCCCCCCccceEEEE
Q 009910 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKIRGFHPSPRAGCCGVL 307 (522)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y-d~~~~~W~~~~~~~~~p~~r~~~~~~~ 307 (522)
-+-.-.+|+.+.. +..-..+.+....+..+++.|.. + .++.- |....+|+.+.. +..+...+++.
T Consensus 157 S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~-G-----~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~ 222 (334)
T PRK13684 157 TTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSR-G-----NFYSTWEPGQTAWTPHQR----NSSRRLQSMGF 222 (334)
T ss_pred ECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCC-c-----eEEEEcCCCCCeEEEeeC----CCcccceeeeE
Confidence 4445678998852 22333445555566644444432 2 24433 444567998854 33344444444
Q ss_pred E-CCEEEEEcccCCCCCcCeEEEE--ECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCC
Q 009910 308 C-GTKWYIAGGGSRKKRHAETLIF--DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 308 ~-~~~iyi~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
. ++.++++|... ..++ +-...+|+.+.. |.. ....+...+.... .+.++++|..+
T Consensus 223 ~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~--~~~~~l~~v~~~~--~~~~~~~G~~G 280 (334)
T PRK13684 223 QPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEI--TNGYGYLDLAYRT--PGEIWAGGGNG 280 (334)
T ss_pred cCCCCEEEEecCC-------EEEEccCCCCCccccccC-Ccc--ccccceeeEEEcC--CCCEEEEcCCC
Confidence 3 67888887532 2334 233468997543 211 1112222233332 34588877653
No 74
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.49 E-value=3.3 Score=38.09 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=77.5
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCCCcE--EEeeec-CCCCCCCcceEEEEEC-CEEEEEcccCCCCCccCcE
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAK-GDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~-~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v 226 (522)
+++...+++|+|-|. .+|+++...... ..+... +.+|. ....+..... +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC--------CEE
Confidence 444556999999664 288888652221 122110 11332 2333333223 89999955 347
Q ss_pred EEEEcCCCcEE---EeecCCCCCC--CCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEe-----ee-CC
Q 009910 227 HMFDLKSLTWL---PLHCTGTGPS--PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-----KI-RG 294 (522)
Q Consensus 227 ~~yd~~t~~W~---~~~~~g~~p~--~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-----~~-~~ 294 (522)
|+|+..+..+. .+... ..|. .... +|.... ++.+|+|.| +..|+||...++...- .. -.
T Consensus 74 w~~~~~~~~~~~Pk~i~~~-~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~ 144 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDL-GFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFP 144 (194)
T ss_pred EEEcCcccccCCCcchhhc-CCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCC
Confidence 78876542221 11100 1121 2222 333343 445999987 3688998765543210 00 00
Q ss_pred CCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 295 FHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 295 ~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
..| ..-.++... ++++|++-| +..|+||..+.+
T Consensus 145 g~p--~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 145 GVP--DKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CcC--CCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 112 112233334 489999988 459999998766
No 75
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.46 E-value=7 Score=40.42 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=79.9
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
..++++|+.+++-..+.. .+..... ....-++ .|++....++ ..+++.+|+.+...+.+... +....
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~---~~~~~- 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNG---PGIDT- 281 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCC---CCCCC-
Confidence 569999999987666553 2222222 1122233 5655433222 25799999998887777521 11111
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCCCcCeEEEE
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~v~~y 330 (522)
.....-+++.|++.....+ ..++|.+|+.+..++.+...+ ........ -+++.+++..... ....++.+
T Consensus 282 ~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~ 351 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVM 351 (417)
T ss_pred CEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence 1111224554444332222 247999999988887775431 11112222 2555555554332 23569999
Q ss_pred ECCCCceEEec
Q 009910 331 DILKGEWSVAI 341 (522)
Q Consensus 331 d~~~~~W~~~~ 341 (522)
|+.+..++.+.
T Consensus 352 d~~~~~~~~l~ 362 (417)
T TIGR02800 352 DLDGGGERVLT 362 (417)
T ss_pred eCCCCCeEEcc
Confidence 99987776655
No 76
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.33 E-value=6.6 Score=39.67 Aligned_cols=275 Identities=18% Similarity=0.207 Sum_probs=131.4
Q ss_pred CCCceEEeeecCCCCCCccceEEEE--ECCEEEEEcCcCCCCCcccEEEEEcCC--CcEEEcccccccCCCCCCCCCCCc
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAV--IGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPAC 147 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r 147 (522)
.+.+++.+........|.+ ++. -++.||+..... .....+..|.... .+.+.+.... ...
T Consensus 23 ~~g~l~~~~~~~~~~~Ps~---l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~----------~~g- 86 (345)
T PF10282_consen 23 ETGTLTLVQTVAEGENPSW---LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVP----------SGG- 86 (345)
T ss_dssp TTTEEEEEEEEEESSSECC---EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEE----------ESS-
T ss_pred CCCCceEeeeecCCCCCce---EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeec----------cCC-
Confidence 7788887763211122211 222 246788886533 1234555555554 5777766531 111
Q ss_pred cceEEEEE---CCEEEEEcccCCCCCCceeEEEEECCCC-cEEEeee------cCC---CCCCCcceEEEEE--CCEEEE
Q 009910 148 RGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEA------KGD---IPVARSGHTVVRA--SSVLIL 212 (522)
Q Consensus 148 ~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~------~~~---~p~~r~~~~~~~~--~~~iyv 212 (522)
...+.+.+ +..||+.- +. ...+.+|++..+ +-..... .+. ....-..|.+... ++.+|+
T Consensus 87 ~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 12222333 45566642 11 124777777663 2222110 011 1223344666554 346777
Q ss_pred EcccCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCC-CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC--CCcE
Q 009910 213 FGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE--TMIW 287 (522)
Q Consensus 213 ~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W 287 (522)
.- .-.+.+++|+....+ .+..... ..|.. --.|.+..-+++++||.... .+.|.+|+.. +..+
T Consensus 161 ~d------lG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 161 PD------LGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL-----SNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EE------TTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----TTEEEEEEEETTTTEE
T ss_pred Ee------cCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----CCcEEEEeecccCCce
Confidence 52 124678888887765 6553211 12221 11233433456779998754 3456666655 7777
Q ss_pred EEeeeCCCCCC---CccceEEEEE---CCEEEEEcccCCCCCcCeEEEEEC--CCCceEEeccCCCCCCCCCCCcEEEEE
Q 009910 288 TRIKIRGFHPS---PRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLV 359 (522)
Q Consensus 288 ~~~~~~~~~p~---~r~~~~~~~~---~~~iyi~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~~~~~r~~~~~~~~ 359 (522)
+.+......|. .....+.+.+ +..||+.--. .+.|-+|++ .+.+.+.+...+.....+ -...+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G~~P----r~~~~ 299 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGGKFP----RHFAF 299 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESSSSE----EEEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCCCCc----cEEEE
Confidence 76665332222 2212333333 4467775432 345777776 456666665433211122 22333
Q ss_pred eeCCccEEEEEcCCCCCCCCcEEEEEcc--cCCcccc
Q 009910 360 QHKEKDFLVAFGGIKKEPSNQVEVLSIE--KNESSMG 394 (522)
Q Consensus 360 ~~~~~~~l~v~GG~~~~~~~~v~~y~~~--~~~w~~~ 394 (522)
. .+..+||+.... .+.|.+|+++ +..+...
T Consensus 300 s-~~g~~l~Va~~~----s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 300 S-PDGRYLYVANQD----SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp --TTSSEEEEEETT----TTEEEEEEEETTTTEEEEE
T ss_pred e-CCCCEEEEEecC----CCeEEEEEEeCCCCcEEEe
Confidence 3 234566665443 3468888765 4444443
No 77
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.19 E-value=5.3 Score=38.01 Aligned_cols=212 Identities=16% Similarity=0.093 Sum_probs=110.5
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
++.||+.-- ....++++|+.+++-..+. .+. ..+++.. ++++|+... ..+.++|+.+
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~~~~~----~~~---~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEVEVID----LPG---PNGMAFDRPDGRLYVADS--------GGIAVVDPDT 69 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEEEEEE----SSS---EEEEEEECTTSEEEEEET--------TCEEEEETTT
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeEEEEe----cCC---CceEEEEccCCEEEEEEc--------CceEEEecCC
Confidence 577887622 2246999999999877665 333 2333443 688888743 3356779999
Q ss_pred CcEEEeecC--CCCCCCCcceEEEEECCcEEEEEcC-CCCCCCC--CcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE
Q 009910 234 LTWLPLHCT--GTGPSPRSNHVAALYDDKNLLIFGG-SSKSKTL--NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (522)
Q Consensus 234 ~~W~~~~~~--g~~p~~r~~~~~~~~~~~~lyv~GG-~~~~~~~--~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~ 308 (522)
.+++.+... +..+..+..-.++.-++. +|+--- ....... ..++++++. ++.+.+...- .. .-+.+..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~--~~---pNGi~~s 142 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL--GF---PNGIAFS 142 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--SS---EEEEEEE
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCc--cc---ccceEEC
Confidence 999888632 111333333333333444 776431 1111112 569999998 6666654421 11 1233333
Q ss_pred --CCEEEEEcccCCCCCcCeEEEEECCCCc--eEE---eccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcE
Q 009910 309 --GTKWYIAGGGSRKKRHAETLIFDILKGE--WSV---AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 381 (522)
Q Consensus 309 --~~~iyi~GG~~~~~~~~~v~~yd~~~~~--W~~---~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v 381 (522)
+..+|+.--. ...|++|++.... +.. +...+. .....--.++.. .+.||+..-. .+.|
T Consensus 143 ~dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~g~pDG~~vD~--~G~l~va~~~----~~~I 207 (246)
T PF08450_consen 143 PDGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFIDFPG----GPGYPDGLAVDS--DGNLWVADWG----GGRI 207 (246)
T ss_dssp TTSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEEE-SS----SSCEEEEEEEBT--TS-EEEEEET----TTEE
T ss_pred Ccchheeecccc-----cceeEEEeccccccceeeeeeEEEcCC----CCcCCCcceEcC--CCCEEEEEcC----CCEE
Confidence 3467775332 2459999986433 332 221111 111123344442 3457775211 1269
Q ss_pred EEEEcccCCccccccCCCCCCCCceEEeecCC
Q 009910 382 EVLSIEKNESSMGRRSTPNAKGPGQLLFEKRS 413 (522)
Q Consensus 382 ~~y~~~~~~w~~~~~~~~~~~~~~~~~fgg~~ 413 (522)
.+|+++...-... ..+ ...|-.+.|||..
T Consensus 208 ~~~~p~G~~~~~i--~~p-~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 208 VVFDPDGKLLREI--ELP-VPRPTNCAFGGPD 236 (246)
T ss_dssp EEEETTSCEEEEE--E-S-SSSEEEEEEESTT
T ss_pred EEECCCccEEEEE--cCC-CCCEEEEEEECCC
Confidence 9999984432222 222 2466677888753
No 78
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.93 E-value=8.9 Score=39.63 Aligned_cols=191 Identities=11% Similarity=0.010 Sum_probs=93.6
Q ss_pred CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 171 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
....++..|.....=+.+.. .. .........-+++.+++...... ...++++|+.+.+-..+. ..+....
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~---~~-~~~~~p~~Spdg~~la~~~~~~~---~~~i~v~d~~~g~~~~~~---~~~~~~~ 237 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITR---SR-EPILSPAWSPDGQKLAYVSFESG---KPEIYVQDLATGQREKVA---SFPGMNG 237 (417)
T ss_pred CcceEEEEcCCCCCCEEeec---CC-CceecccCCCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEee---cCCCCcc
Confidence 34568888876543333331 11 00111112234554555443322 257999999988766664 2222222
Q ss_pred ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECC-EEEEEcccCCCCCcCeEEE
Q 009910 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyi~GG~~~~~~~~~v~~ 329 (522)
. .+..-+++.|++....++ ..++|.+|+.++..+++.... .... .....-++ +|++.....+ ..++|+
T Consensus 238 ~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~---~~~~-~~~~s~dg~~l~~~s~~~g---~~~iy~ 306 (417)
T TIGR02800 238 A-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGP---GIDT-EPSWSPDGKSIAFTSDRGG---SPQIYM 306 (417)
T ss_pred c-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCC---CCCC-CEEECCCCCEEEEEECCCC---CceEEE
Confidence 1 222234454554432221 247999999988877775431 1110 11111244 4554433222 247999
Q ss_pred EECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCcc
Q 009910 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESS 392 (522)
Q Consensus 330 yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w~ 392 (522)
+|+.+..++.+.... .. .....+..++ . .+++..... ....++++|+.+..+.
T Consensus 307 ~d~~~~~~~~l~~~~------~~-~~~~~~spdg-~-~i~~~~~~~-~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 307 MDADGGEVRRLTFRG------GY-NASPSWSPDG-D-LIAFVHREG-GGFNIAVMDLDGGGER 359 (417)
T ss_pred EECCCCCEEEeecCC------CC-ccCeEECCCC-C-EEEEEEccC-CceEEEEEeCCCCCeE
Confidence 999988887765311 11 1122333233 2 334433322 2346888998875543
No 79
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.90 E-value=8.9 Score=39.55 Aligned_cols=220 Identities=14% Similarity=0.149 Sum_probs=106.5
Q ss_pred CCCceEEeeecCCCCCCc--cceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc
Q 009910 72 NSENWMVLSIAGDKPIPR--FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (522)
...+|+...........+ ...++...++..|++|- .+ -++.=.-...+|+.++... ..+. ..
T Consensus 118 GG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~-~G-----~il~T~DgG~tW~~~~~~~---------~~p~-~~ 181 (398)
T PLN00033 118 GGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGK-PA-----ILLHTSDGGETWERIPLSP---------KLPG-EP 181 (398)
T ss_pred CCCCceECccCcccccccccceeeeEEECCEEEEEcC-ce-----EEEEEcCCCCCceECcccc---------CCCC-Cc
Confidence 567899864211111111 23444556777888863 21 2222222347999886521 1111 12
Q ss_pred eEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC-CCCCCC--------------cceEEEE-ECCEEEE
Q 009910 150 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG-DIPVAR--------------SGHTVVR-ASSVLIL 212 (522)
Q Consensus 150 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~p~~r--------------~~~~~~~-~~~~iyv 212 (522)
+.+... ++.+++.|... .+++-+-.-.+|+.+.... +.+..+ ....+.. -++.+++
T Consensus 182 ~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~ 254 (398)
T PLN00033 182 VLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVA 254 (398)
T ss_pred eEEEEECCCceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEE
Confidence 333344 45677777432 2666655567899762110 001111 1111222 2345555
Q ss_pred EcccCCCCCccCcEEEE-EcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE----
Q 009910 213 FGGEDGKRRKLNDLHMF-DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW---- 287 (522)
Q Consensus 213 ~GG~~~~~~~~~~v~~y-d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W---- 287 (522)
+|-.. .+++- |.....|+.+. .|.++...++....+..+++.|... .++.-+.....|
T Consensus 255 vg~~G-------~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 255 VSSRG-------NFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFD 317 (398)
T ss_pred EECCc-------cEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccc
Confidence 54321 23332 33333489884 4555555555444444488776432 344444444444
Q ss_pred -EEeeeCCCCCCCccceE-EEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEec
Q 009910 288 -TRIKIRGFHPSPRAGCC-GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 288 -~~~~~~~~~p~~r~~~~-~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
+.+.. +..+.... +... ++.++++|... -+++-.....+|+...
T Consensus 318 f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 318 FEEADI----KSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred eeeccc----CCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 43322 22233333 3333 66888888643 2556666778999965
No 80
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.69 E-value=5.6 Score=36.53 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=77.5
Q ss_pred EEEECCEEEEEcCcCCCCCcccEEEEEcCCCcE--EEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEcccCCCCC
Q 009910 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSW--TAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGS 170 (522)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~ 170 (522)
++...+++|+|-| +.+|+++...... ..+... -+ ..|.....+..... +++|+|-|.
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~---w~-----~~p~~IDAa~~~~~~~~~yfFkg~----- 71 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSF---WP-----SLPSPVDAAFERPDTGKIYFFKGD----- 71 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh---CC-----CCCCCccEEEEECCCCEEEEECCC-----
Confidence 3445688999977 4678887652111 111110 00 01222233333333 899999664
Q ss_pred CceeEEEEECCCCcEE---EeeecCCCCC--CCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEe-----
Q 009910 171 DRVSVWTFDTETECWS---VVEAKGDIPV--ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL----- 239 (522)
Q Consensus 171 ~~~~v~~yd~~t~~W~---~~~~~~~~p~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~----- 239 (522)
.+|+|+..+..+. .+.. -..|. .....+...- ++++|+|-| +..|+||..+++...-
T Consensus 72 ---~yw~~~~~~~~~~~Pk~i~~-~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i 139 (194)
T cd00094 72 ---KYWVYTGKNLEPGYPKPISD-LGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLI 139 (194)
T ss_pred ---EEEEEcCcccccCCCcchhh-cCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcch
Confidence 3899987652221 1111 01222 2233333222 589999976 3478888765543211
Q ss_pred ec-CCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 240 HC-TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 240 ~~-~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
.. -..+|.. -.++....+..+|+|-|. ..|+||..+++
T Consensus 140 ~~~w~g~p~~--idaa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 140 ETDFPGVPDK--VDAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred hhcCCCcCCC--cceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 00 0123322 223444552348998773 79999987765
No 81
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.58 E-value=8.6 Score=38.36 Aligned_cols=240 Identities=11% Similarity=0.097 Sum_probs=106.7
Q ss_pred EEEEEcCcCCCCCcccEEEEEcCC-CcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcccCCCCCCceeEE
Q 009910 100 KMIVVGGESGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 100 ~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
.+|+..+.. +.+..|+..+ .+++.+... +... ..+.++. .++.||+.+. . ...+.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~----------~~~~-~~~~l~~spd~~~lyv~~~-~-----~~~i~ 60 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVV----------DVPG-QVQPMVISPDKRHLYVGVR-P-----EFRVL 60 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEE----------ecCC-CCccEEECCCCCEEEEEEC-C-----CCcEE
Confidence 467775432 5678888864 466655442 1111 1112222 2455666433 1 13365
Q ss_pred EEECC-CCcEEEeeecCCCCCCCcceEEEE-ECC-EEEEEcccCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCcc
Q 009910 177 TFDTE-TECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSN 251 (522)
Q Consensus 177 ~yd~~-t~~W~~~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~ 251 (522)
.|+.. +++++.+.. .+....-+.++. -++ .+|+.. +. .+.+.+||++++. ...+. ..+....-
T Consensus 61 ~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~ 128 (330)
T PRK11028 61 SYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGC 128 (330)
T ss_pred EEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcc
Confidence 66664 456765542 222211122333 234 566653 22 2557788876431 11221 12222223
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCC-cEEEeeeC-CCCCCCccceEEEEE--CCEEEEEcccCCCCCcCe
Q 009910 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIR-GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAE 326 (522)
Q Consensus 252 ~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~-~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~ 326 (522)
|.++.. +++.+|+..- ..+.+.+||+++. ........ ...+.+..-..++.. +..+|+.-..+ +.
T Consensus 129 ~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-----~~ 198 (330)
T PRK11028 129 HSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-----SS 198 (330)
T ss_pred cEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-----CE
Confidence 455444 3455666432 1346999998763 22210000 000111111123333 34677764322 45
Q ss_pred EEEEECC--CCceEEec---cCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 327 TLIFDIL--KGEWSVAI---TSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 327 v~~yd~~--~~~W~~~~---~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
+.+||++ +.+.+.+. ..|.....++.. ..+.+. .+..++|+... ..+.+-+|+++.+
T Consensus 199 v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~i~~~-pdg~~lyv~~~----~~~~I~v~~i~~~ 260 (330)
T PRK11028 199 VDVWQLKDPHGEIECVQTLDMMPADFSDTRWA-ADIHIT-PDGRHLYACDR----TASLISVFSVSED 260 (330)
T ss_pred EEEEEEeCCCCCEEEEEEEecCCCcCCCCccc-eeEEEC-CCCCEEEEecC----CCCeEEEEEEeCC
Confidence 7777765 44544432 222222223322 123333 34457777522 2446777877543
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.44 E-value=13 Score=39.99 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=109.0
Q ss_pred EEEECCEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecC-CC-C---CCCcceEEEEECCEEEEEcccCCCCCccC
Q 009910 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKG-DI-P---VARSGHTVVRASSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~-~~-p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 224 (522)
-++.++.||+.... ..++.+|..|++ |+.-.... .. + ........++.+++||+.. . -.
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~------dg 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-L------DA 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-C------CC
Confidence 34568999986442 148999998865 87543110 00 0 0011223456678888732 1 24
Q ss_pred cEEEEEcCCCc--EEEeecCCCCCCC-CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCC---
Q 009910 225 DLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFH--- 296 (522)
Q Consensus 225 ~v~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~--- 296 (522)
.++.+|.++.+ |+.-.. ..... ....+-++.++. ||+-...........++.||.+++ .|+.-...+..
T Consensus 131 ~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred EEEEEECCCCCEEeecccc--cccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 58999998865 765421 11111 112233455665 555322111223457899999876 47644332110
Q ss_pred ----------C---------CCccc----eEEEEE--CCEEEEEccc----CC------CCCcCeEEEEECCCCc--eEE
Q 009910 297 ----------P---------SPRAG----CCGVLC--GTKWYIAGGG----SR------KKRHAETLIFDILKGE--WSV 339 (522)
Q Consensus 297 ----------p---------~~r~~----~~~~~~--~~~iyi~GG~----~~------~~~~~~v~~yd~~~~~--W~~ 339 (522)
| ..+.+ ..+++- .+.||+--|. .. +...+.+..+|++|.+ |.-
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 00111 112222 3456664443 11 2245689999999864 765
Q ss_pred eccCCCCCCCCCCCcEEEEEee--CCc-cEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 340 AITSPSSSVTSNKGFTLVLVQH--KEK-DFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 340 ~~~~p~~~~~~r~~~~~~~~~~--~~~-~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
-.. +-..-.--.....+++.. +++ ..+++.+..++ .++++|.++.+-
T Consensus 288 Q~~-~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~~ 337 (527)
T TIGR03075 288 QTT-PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG----FFYVLDRTNGKL 337 (527)
T ss_pred eCC-CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc----eEEEEECCCCce
Confidence 332 211111112223344432 222 34666776544 588888887763
No 83
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.08 E-value=8.6 Score=36.90 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=101.2
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCC-----CcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTET-----ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t-----~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 230 (522)
.+++|++.|.... .++.|.... +.....- .+|.+-.+...++++|.+|.--. ..+.+-+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5789999886543 466664322 2233222 37777777788889999998632 357899999
Q ss_pred cCCCcEE-EeecCCCCCCCCcc------------eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCC
Q 009910 231 LKSLTWL-PLHCTGTGPSPRSN------------HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP 297 (522)
Q Consensus 231 ~~t~~W~-~~~~~g~~p~~r~~------------~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p 297 (522)
+.++.=. .. .+|.+.+. .-.++-+++ |.|+=......-.--+-.+|+++..-++--... .+
T Consensus 96 L~t~~v~~~~----~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T~-~~ 169 (250)
T PF02191_consen 96 LTTRSVVARR----ELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS-YP 169 (250)
T ss_pred CcCCcEEEEE----ECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEec-cC
Confidence 9998755 32 22322222 223333445 444432222111123456666654322222221 13
Q ss_pred CCccceEEEEECCEEEEEcccCCCCCcCeE-EEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEc
Q 009910 298 SPRAGCCGVLCGTKWYIAGGGSRKKRHAET-LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (522)
Q Consensus 298 ~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v-~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~G 371 (522)
.+.. ..|.++-|.||++...+... ..| +.||+.+++=..+. .+ .+.+-...+++-.++.+ .+||+.-
T Consensus 170 k~~~-~naFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~-i~--f~~~~~~~~~l~YNP~d-k~LY~wd 237 (250)
T PF02191_consen 170 KRSA-GNAFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVS-IP--FPNPYGNISMLSYNPRD-KKLYAWD 237 (250)
T ss_pred chhh-cceeeEeeEEEEEEECCCCC--cEEEEEEECCCCceecee-ee--eccccCceEeeeECCCC-CeEEEEE
Confidence 3222 23555678899887765432 344 78999988755432 22 22333345555555444 4677653
No 84
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.07 E-value=15 Score=39.57 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=69.4
Q ss_pred eEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (522)
.+-+++++.||+... .+.++.+|..+. .|+.-......... ...........+..+++||+... +
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~---~~~~~~~~rg~av~~~~v~v~t~-d--- 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIP---VMCCDVVNRGVALYDGKVFFGTL-D--- 129 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCccccc---ccccccccccceEECCEEEEEcC-C---
Confidence 445667899998654 246899998874 68765431100000 00000112234556788886432 1
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCC-CcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEe
Q 009910 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVA-RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 239 (522)
..++.+|.+|++ |+.-.. +.... ....+-++.++.||+-..... ...-..+..||.++.+ |+.-
T Consensus 130 ---g~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 130 ---ARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ---CEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEecc
Confidence 249999999876 875321 11111 122334556888777422111 1123568899998864 7644
No 85
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.65 E-value=15 Score=38.37 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=79.4
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
..+|++|+.+++-+.+.. .+. ....... -++ +|++..-.++ ..+++++|+.+...+.+. ..+. ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt---~~~~-~~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVT---NHPA-ID 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcc---cCCC-Cc
Confidence 469999999988776652 221 1111222 234 4544322211 257999999999888775 2111 11
Q ss_pred ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-E-CCEEEEEcccCCCCCcCeEE
Q 009910 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-C-GTKWYIAGGGSRKKRHAETL 328 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~-~~~iyi~GG~~~~~~~~~v~ 328 (522)
......-+++.|++..... -..++|.+|+.++.++++...+ ........ - ++.|++.....+ ..+++
T Consensus 290 ~~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~ 358 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG---NFHVA 358 (430)
T ss_pred CCeEECCCCCEEEEEECCC---CCceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC---ceEEE
Confidence 1112223455454443221 1247999999998888875431 11111222 2 445555543222 24699
Q ss_pred EEECCCCceEEecc
Q 009910 329 IFDILKGEWSVAIT 342 (522)
Q Consensus 329 ~yd~~~~~W~~~~~ 342 (522)
.+|+.+...+.+..
T Consensus 359 ~~dl~tg~~~~lt~ 372 (430)
T PRK00178 359 AQDLQRGSVRILTD 372 (430)
T ss_pred EEECCCCCEEEccC
Confidence 99999988877653
No 86
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=92.63 E-value=10 Score=36.60 Aligned_cols=231 Identities=17% Similarity=0.209 Sum_probs=108.9
Q ss_pred CCCceEEeeecCCCC--CCccceEEEEE--CCEEEEEc--CcCCCCCcc--cEEEEEcC-CCcEEEcccccccCCCCCCC
Q 009910 72 NSENWMVLSIAGDKP--IPRFNHAAAVI--GNKMIVVG--GESGNGLLD--DVQVLNFD-RFSWTAASSKLYLSPSSLPL 142 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p--~~R~~~~~~~~--~~~iyv~G--G~~~~~~~~--~v~~yd~~-~~~W~~~~~~~~~~~~~~~~ 142 (522)
...+|.....-...+ ..+....+.+. +++|++|- +........ -.+..+.+ ..+|+.......... .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~----~ 103 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWF----G 103 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCC----C
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccc----c
Confidence 557798865322333 33444444443 68888886 222211111 12355555 469988864221100 0
Q ss_pred CCC-CccceEEEEECCEEEEEcccCCCCCCceeEEEEECCC-CcEEEeeecCCCCCCCcceEEEE-E-CCEEEEEcccCC
Q 009910 143 KIP-ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWSVVEAKGDIPVARSGHTVVR-A-SSVLILFGGEDG 218 (522)
Q Consensus 143 ~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~ 218 (522)
... ...+..+..-++.+++. .+.........+..|..+. .+|+...+.. +.......+.+ . +++|+++--..
T Consensus 104 ~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~- 179 (275)
T PF13088_consen 104 NFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE- 179 (275)
T ss_dssp SCEECSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-
T ss_pred ceeccceeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-
Confidence 011 11222244447888876 2211112233455566554 4599887511 22233333333 3 57888886443
Q ss_pred CCCccCcEEE-EEcC-CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCC
Q 009910 219 KRRKLNDLHM-FDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH 296 (522)
Q Consensus 219 ~~~~~~~v~~-yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 296 (522)
... .++. +... -.+|+..... .+|.+.....++...+..++++.........-.++.-.-...+|+........
T Consensus 180 ~~~---~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~ 255 (275)
T PF13088_consen 180 GND---DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDG 255 (275)
T ss_dssp SST---EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEE
T ss_pred CCC---cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCC
Confidence 211 3333 3333 3579986532 45666655555555555566665522111111233333347899977654222
Q ss_pred CCCccceEE-EEE-CCEEEE
Q 009910 297 PSPRAGCCG-VLC-GTKWYI 314 (522)
Q Consensus 297 p~~r~~~~~-~~~-~~~iyi 314 (522)
+....++.. +.. +++|||
T Consensus 256 ~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 256 PNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp E-CCEEEEEEEEEETTEEEE
T ss_pred CCCcEECCeeEEeCCCcCCC
Confidence 222344444 444 678886
No 87
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.54 E-value=15 Score=38.35 Aligned_cols=187 Identities=12% Similarity=0.031 Sum_probs=92.5
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
..+|++|+.+++.+.+.. .+...... ...-++ +|++....++ ..++|++|+.+..-..+. ..+.. ..
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~~~-~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt---~~~~~-~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTFAP-RFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLT---DSPAI-DT 293 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcccCc-EECCCCCEEEEEEecCC----CceEEEEECCCCceEEcc---CCCCc-cC
Confidence 469999999998877753 22221111 122234 4544432222 357999999988877764 22211 11
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEEC-CEEEEEcccCCCCCcCeEEEE
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyi~GG~~~~~~~~~v~~y 330 (522)
.....-+++.|++.....+ ..++|++|..+...+++... ..........-+ +.|++... ... ...++.+
T Consensus 294 ~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~-~~~--~~~i~~~ 363 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQ-GGG--QFSIGVM 363 (435)
T ss_pred ceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEc-CCC--ceEEEEE
Confidence 1222234553443221111 24799999988877777542 111111111123 45544432 111 2468999
Q ss_pred ECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCC
Q 009910 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (522)
Q Consensus 331 d~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~y~~~~~~ 390 (522)
|+.+...+.+... . . .....+..++ ..|+......+.. ...++++++....
T Consensus 364 d~~~~~~~~lt~~--~----~--~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 364 KPDGSGERILTSG--F----L--VEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ECCCCceEeccCC--C----C--CCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCc
Confidence 9877766554321 0 0 1112233233 3344333222221 2468888887654
No 88
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.51 E-value=15 Score=38.33 Aligned_cols=145 Identities=15% Similarity=0.167 Sum_probs=78.4
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
..++++|+.+++-..+.. .+.. .......-++ +|++....++ ..+++++|+.+..-+.+.. .+. . .
T Consensus 228 ~~l~~~dl~~g~~~~l~~---~~g~-~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~---~~~-~-~ 294 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS---FRGI-NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTN---HFG-I-D 294 (433)
T ss_pred cEEEEEECCCCCEEEecc---CCCC-ccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECcc---CCC-C-c
Confidence 469999999988776653 2221 1111222234 5554432222 2579999999888766642 111 1 1
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEE
Q 009910 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETL 328 (522)
Q Consensus 252 ~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~ 328 (522)
...... +++.|++.....+ ..++|.+|..++..+++...+ ......... ++.|++..+..+ ...++
T Consensus 295 ~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~ 363 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGSGG---QYRIA 363 (433)
T ss_pred cceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECCCC---ceeEE
Confidence 112223 4453443322221 247999999888888775431 111122222 445655544221 23799
Q ss_pred EEECCCCceEEec
Q 009910 329 IFDILKGEWSVAI 341 (522)
Q Consensus 329 ~yd~~~~~W~~~~ 341 (522)
++|+.+...+.+.
T Consensus 364 v~d~~~g~~~~Lt 376 (433)
T PRK04922 364 VMDLSTGSVRTLT 376 (433)
T ss_pred EEECCCCCeEECC
Confidence 9999988887665
No 89
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.50 E-value=14 Score=37.74 Aligned_cols=202 Identities=16% Similarity=0.141 Sum_probs=102.0
Q ss_pred EEEECCEEEEEcCcCCCCCcccEEEEEcCCCc--EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCC
Q 009910 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (522)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 171 (522)
.+..++++|+.. . ...++.+|+.+.+ |+...... ...........+++||+- ..+.
T Consensus 64 ~~~~dg~v~~~~---~---~G~i~A~d~~~g~~~W~~~~~~~-----------~~~~~~~~~~~~G~i~~g-~~~g---- 121 (370)
T COG1520 64 PADGDGTVYVGT---R---DGNIFALNPDTGLVKWSYPLLGA-----------VAQLSGPILGSDGKIYVG-SWDG---- 121 (370)
T ss_pred cEeeCCeEEEec---C---CCcEEEEeCCCCcEEecccCcCc-----------ceeccCceEEeCCeEEEe-cccc----
Confidence 366678899871 1 1278999999875 86655410 000111122226776654 3322
Q ss_pred ceeEEEEECCCC--cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCC--cEEEeecCCCCCC
Q 009910 172 RVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPS 247 (522)
Q Consensus 172 ~~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~ 247 (522)
.+++||..++ .|+.-... . .+.....+..++.+|+.- ..+.++.+|..+. .|+.-...+ .+
T Consensus 122 --~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~- 186 (370)
T COG1520 122 --KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LS- 186 (370)
T ss_pred --eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cc-
Confidence 6999999755 48775531 1 444444555566666642 2356888888754 587543211 12
Q ss_pred CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCCCCCccce--EEEEECCEEEEEcccCCCCC
Q 009910 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGC--CGVLCGTKWYIAGGGSRKKR 323 (522)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r~~~--~~~~~~~~iyi~GG~~~~~~ 323 (522)
.+.....+ ..+..+|+ |..+ . ...++.+|++++ .|+.-... +..+..- ...+....||+-|+.-....
T Consensus 187 ~~~~~~~~-~~~~~vy~-~~~~--~-~~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~~~~~~~ 258 (370)
T COG1520 187 LSIYGSPA-IASGTVYV-GSDG--Y-DGILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVYVDGGVYAGSY 258 (370)
T ss_pred cccccCce-eecceEEE-ecCC--C-cceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEEECCcEEEEec
Confidence 22222222 44452554 4332 1 236999999655 57753222 1111110 11222334444333211112
Q ss_pred cCeEEEEECCCC--ceEEe
Q 009910 324 HAETLIFDILKG--EWSVA 340 (522)
Q Consensus 324 ~~~v~~yd~~~~--~W~~~ 340 (522)
..+++++|..+. .|+.-
T Consensus 259 ~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 259 GGKLLCLDADTGELIWSFP 277 (370)
T ss_pred CCeEEEEEcCCCceEEEEe
Confidence 234888887654 57763
No 90
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.31 E-value=16 Score=37.91 Aligned_cols=256 Identities=11% Similarity=0.057 Sum_probs=126.6
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCC-----C
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGS-----D 171 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~-----~ 171 (522)
+++.++++=..+..-...++++|+.+++...-.. +...+..++-. +++.+++........ .
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------EEEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------cccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4555555432222334578999999985433221 11122223333 334444444433222 2
Q ss_pred ceeEEEEECCCCcEE--EeeecCCCCCCCc-ceEE-EEECCEEEEEcccCCCCCccCcEEEEEcCCC-----cEEEeecC
Q 009910 172 RVSVWTFDTETECWS--VVEAKGDIPVARS-GHTV-VRASSVLILFGGEDGKRRKLNDLHMFDLKSL-----TWLPLHCT 242 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~--~~~~~~~~p~~r~-~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~~ 242 (522)
...|++....+..-+ .+-. .+.... ...+ ..-+++.+++.-.... . .++++..|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~- 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSP- 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEE-
T ss_pred CcEEEEEECCCChHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeC-
Confidence 567999998887643 2221 222222 2222 2234443333222221 1 478999999875 7888852
Q ss_pred CCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc---EEEeeeCCCCCCC-ccceEEEEECCEEEEEccc
Q 009910 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSP-RAGCCGVLCGTKWYIAGGG 318 (522)
Q Consensus 243 g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~p~~-r~~~~~~~~~~~iyi~GG~ 318 (522)
+..-....+...++. +|+.-. .......+..+++.... |..+-.. +.. ..-..+...++.|++.-=.
T Consensus 275 ---~~~~~~~~v~~~~~~-~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 275 ---REDGVEYYVDHHGDR-LYILTN--DDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp ---SSSS-EEEEEEETTE-EEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEE
T ss_pred ---CCCceEEEEEccCCE-EEEeeC--CCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEE
Confidence 122222233344555 787654 23345678999987664 7743332 222 2333445568888876432
Q ss_pred CCCCCcCeEEEEECC-CCceEEeccCCCCCCCCCCCcEEEEE-eeCCccEEEEEcCCCCCCCCcEEEEEcccCCccc
Q 009910 319 SRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLV-QHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 393 (522)
Q Consensus 319 ~~~~~~~~v~~yd~~-~~~W~~~~~~p~~~~~~r~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w~~ 393 (522)
+ ....+.++|+. +..-..++. | ..+...... ........|.+.+... ...++.||+.+++.+.
T Consensus 346 ~---~~~~l~v~~~~~~~~~~~~~~-p------~~g~v~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 346 N---GSSRLRVYDLDDGKESREIPL-P------EAGSVSGVSGDFDSDELRFSYSSFTT--PPTVYRYDLATGELTL 410 (414)
T ss_dssp T---TEEEEEEEETT-TEEEEEEES-S------SSSEEEEEES-TT-SEEEEEEEETTE--EEEEEEEETTTTCEEE
T ss_pred C---CccEEEEEECCCCcEEeeecC-C------cceEEeccCCCCCCCEEEEEEeCCCC--CCEEEEEECCCCCEEE
Confidence 2 34678999998 333333221 1 112111111 1223344455666542 3479999999988554
No 91
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.30 E-value=5 Score=34.03 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=54.3
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCC-CCcCeEEEE-ECC
Q 009910 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIF-DIL 333 (522)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~-~~~~~v~~y-d~~ 333 (522)
.++|- +|-..-. .....+.|..||.++.+|+.+...............+.++|+|-++.-.... ...-++|++ |..
T Consensus 3 cinGv-ly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGV-LYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcE-EEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 34554 4443322 3334567999999999999887631123444555667779998887654433 234688988 466
Q ss_pred CCceEEecc
Q 009910 334 KGEWSVAIT 342 (522)
Q Consensus 334 ~~~W~~~~~ 342 (522)
+.+|++...
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 789998643
No 92
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.86 E-value=18 Score=37.76 Aligned_cols=188 Identities=8% Similarity=-0.018 Sum_probs=91.9
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
...+|..|.....=+.+.. -... .......-+++.+++...... ...++++|+.+.+...+. ..+....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~---~~~~-v~~p~wSpDG~~lay~s~~~g---~~~i~~~dl~~g~~~~l~---~~~g~~~- 249 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTD---GSSL-VLTPRFSPNRQEITYMSYANG---RPRVYLLDLETGQRELVG---NFPGMTF- 249 (435)
T ss_pred ceEEEEECCCCCCcEEEec---CCCC-eEeeEECCCCCEEEEEEecCC---CCEEEEEECCCCcEEEee---cCCCccc-
Confidence 5579999886654444432 1111 111111224444444333222 257999999998887775 3332211
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECC-EEEEEcccCCCCCcCeEEEE
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyi~GG~~~~~~~~~v~~y 330 (522)
.....-+++.|++....++ ..++|.+|++++.-+++... +.. .......-++ +|++.....+ ..++|++
T Consensus 250 ~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~---~~~-~~~~~~spDG~~i~f~s~~~g---~~~Iy~~ 319 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDS---PAI-DTSPSYSPDGSQIVFESDRSG---SPQLYVM 319 (435)
T ss_pred CcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCC---CCc-cCceeEcCCCCEEEEEECCCC---CCeEEEE
Confidence 1122234554544332222 35799999998887776543 111 1111111244 4544332221 3579999
Q ss_pred ECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 331 d~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
|+.+...+.+.... .......+..++ ..|+......+ ...++++|+.+..
T Consensus 320 d~~g~~~~~lt~~~-------~~~~~~~~SpdG-~~ia~~~~~~~--~~~i~~~d~~~~~ 369 (435)
T PRK05137 320 NADGSNPRRISFGG-------GRYSTPVWSPRG-DLIAFTKQGGG--QFSIGVMKPDGSG 369 (435)
T ss_pred ECCCCCeEEeecCC-------CcccCeEECCCC-CEEEEEEcCCC--ceEEEEEECCCCc
Confidence 99888777765311 111222333333 34443322111 2468888876554
No 93
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.73 E-value=13 Score=35.78 Aligned_cols=159 Identities=19% Similarity=0.113 Sum_probs=91.3
Q ss_pred eEEEE-ECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEE
Q 009910 150 HSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (522)
Q Consensus 150 ~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 228 (522)
-.+.. .++.+|.--|..+ .+.+.++|+.+++-..... +|..-++=.++.++++||..== ..+..++
T Consensus 48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~---l~~~~FgEGit~~~d~l~qLTW------k~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVP---LPPRYFGEGITILGDKLYQLTW------KEGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEES------SSSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEE---CCccccceeEEEECCEEEEEEe------cCCeEEE
Confidence 34444 5789998877654 4569999999998665553 8888888899999999999832 2356899
Q ss_pred EEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE-eeeC-CCCCCCccceEEE
Q 009910 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIR-GFHPSPRAGCCGV 306 (522)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~-~~~p~~r~~~~~~ 306 (522)
||+++. ..+. ..+.+..+-..+.-+.. +++--|. +.++.+||++.+=.. +... ...|..+- -=.-
T Consensus 115 yd~~tl--~~~~---~~~y~~EGWGLt~dg~~-Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~L-NELE 181 (264)
T PF05096_consen 115 YDPNTL--KKIG---TFPYPGEGWGLTSDGKR-LIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNL-NELE 181 (264)
T ss_dssp EETTTT--EEEE---EEE-SSS--EEEECSSC-EEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---E-EEEE
T ss_pred Eccccc--eEEE---EEecCCcceEEEcCCCE-EEEECCc------cceEEECCcccceEEEEEEEECCEECCCc-EeEE
Confidence 999764 4443 33444566677755554 8887663 579999998643222 1111 00111110 0112
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 307 ~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
.+++.||. +.=..+.|.+.||+++.-..
T Consensus 182 ~i~G~IyA-----NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 182 YINGKIYA-----NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EETTEEEE-----EETTSSEEEEEETTT-BEEE
T ss_pred EEcCEEEE-----EeCCCCeEEEEeCCCCeEEE
Confidence 23555542 11124668899999987544
No 94
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.69 E-value=19 Score=37.54 Aligned_cols=144 Identities=11% Similarity=0.085 Sum_probs=76.2
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCcceEEEE-ECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccc
Q 009910 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 302 (522)
Q Consensus 224 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~ 302 (522)
..++++|+.+.+-+.+. ..+.. ...... -+++.|++....++ ..++|++|++++..+++... +. . .
T Consensus 223 ~~l~~~~l~~g~~~~l~---~~~g~--~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~~-~-~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT---NFEGL--NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNH---PA-I-D 289 (430)
T ss_pred CEEEEEECCCCCEEEcc---CCCCC--cCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccC---CC-C-c
Confidence 57999999988877764 22211 111222 24454443322111 25799999999988877542 11 1 1
Q ss_pred eEEEE-E-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCc
Q 009910 303 CCGVL-C-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQ 380 (522)
Q Consensus 303 ~~~~~-~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~ 380 (522)
..... - +.+|++..... ...++|.+|+.+.+++.+.... . ......+..++ ..|+......+ ...
T Consensus 290 ~~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~~~lt~~~------~-~~~~~~~Spdg-~~i~~~~~~~~--~~~ 356 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRAERVTFVG------N-YNARPRLSADG-KTLVMVHRQDG--NFH 356 (430)
T ss_pred CCeEECCCCCEEEEEECCC---CCceEEEEECCCCCEEEeecCC------C-CccceEECCCC-CEEEEEEccCC--ceE
Confidence 11122 1 34565553222 2357999999998888765211 1 11222333233 34544433222 335
Q ss_pred EEEEEcccCCccc
Q 009910 381 VEVLSIEKNESSM 393 (522)
Q Consensus 381 v~~y~~~~~~w~~ 393 (522)
++++|+.+.+...
T Consensus 357 l~~~dl~tg~~~~ 369 (430)
T PRK00178 357 VAAQDLQRGSVRI 369 (430)
T ss_pred EEEEECCCCCEEE
Confidence 8899988776544
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.29 E-value=14 Score=35.46 Aligned_cols=234 Identities=18% Similarity=0.187 Sum_probs=105.4
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 178 (522)
..+|+.++. .+.+.+||+.+.+....-.. .... ...+....++.+|+.++.+ ..+..|
T Consensus 43 ~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~----------~~~~-~~~~~~~~g~~l~~~~~~~------~~l~~~ 100 (300)
T TIGR03866 43 KLLYVCASD-----SDTIQVIDLATGEVIGTLPS----------GPDP-ELFALHPNGKILYIANEDD------NLVTVI 100 (300)
T ss_pred CEEEEEECC-----CCeEEEEECCCCcEEEeccC----------CCCc-cEEEECCCCCEEEEEcCCC------CeEEEE
Confidence 457777653 25688999988765432110 0111 1111111235576665432 258899
Q ss_pred ECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE
Q 009910 179 DTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (522)
Q Consensus 179 d~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (522)
|+.+.+-... ++.....++++. -++.+++++..+. +.+..||..+.+-......+..| .+.+..-
T Consensus 101 d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~s~ 166 (300)
T TIGR03866 101 DIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP----RFAEFTA 166 (300)
T ss_pred ECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc----cEEEECC
Confidence 9987642211 111111123333 3566666654322 23566787765432221111111 1222233
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEE-EeeeC--CCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEEC
Q 009910 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-RIKIR--GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDI 332 (522)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~--~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~ 332 (522)
+++.++ +++.. -+.+..||+++.+.. .+... +..+........+.. +..+|+..+.. +.+.+||.
T Consensus 167 dg~~l~-~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~ 236 (300)
T TIGR03866 167 DGKELW-VSSEI----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDA 236 (300)
T ss_pred CCCEEE-EEcCC----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 455344 44321 135899998876432 22211 001111111122222 33456644322 35889998
Q ss_pred CCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 333 ~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+.+ .+.... ....-. .+.+.. +...||+..+.. +.|.+||+++.+
T Consensus 237 ~~~~--~~~~~~----~~~~~~-~~~~~~-~g~~l~~~~~~~----~~i~v~d~~~~~ 282 (300)
T TIGR03866 237 KTYE--VLDYLL----VGQRVW-QLAFTP-DEKYLLTTNGVS----NDVSVIDVAALK 282 (300)
T ss_pred CCCc--EEEEEE----eCCCcc-eEEECC-CCCEEEEEcCCC----CeEEEEECCCCc
Confidence 7644 332211 111112 233332 333455444432 369999988765
No 96
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.00 E-value=3 Score=35.46 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=56.3
Q ss_pred EECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEE-EcC
Q 009910 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF-DLK 232 (522)
Q Consensus 154 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y-d~~ 232 (522)
.++|-+|-..-. .......+..||..+.+|+.+..+............+.++|+|-++.-........-++|++ |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 457777776655 22345569999999999998874211224455666778899998876544332223568887 455
Q ss_pred CCcEEEee
Q 009910 233 SLTWLPLH 240 (522)
Q Consensus 233 t~~W~~~~ 240 (522)
..+|++..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 67899875
No 97
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.61 E-value=9.5 Score=40.18 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=65.0
Q ss_pred CCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCC
Q 009910 247 SPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKR 323 (522)
Q Consensus 247 ~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~ 323 (522)
.|+++.-++... .+-||+.|- -++||++|++.+.|-..-.. ..+-. -++-+ -+.|+.+||.++.
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~---~~~~l--N~v~in~~hgLla~Gt~~g~-- 198 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFET---DSGEL--NVVSINEEHGLLACGTEDGV-- 198 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEcccccccccccc---ccccc--eeeeecCccceEEecccCce--
Confidence 344444444432 223666542 25799999999988543221 11111 22233 4578888887655
Q ss_pred cCeEEEEECCCCceEEeccCCCC---CCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 324 HAETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 324 ~~~v~~yd~~~~~W~~~~~~p~~---~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
|..+|+.+..-...-..+.. .|......+.+++...+.+--+.+|-.. ..|++||+.+.+
T Consensus 199 ---VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~----G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 199 ---VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST----GSVLIYDLRASK 261 (703)
T ss_pred ---EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC----CcEEEEEcccCC
Confidence 88899876542221111111 2222233344455444434344555443 358999987765
No 98
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.30 E-value=25 Score=36.59 Aligned_cols=186 Identities=8% Similarity=0.061 Sum_probs=99.0
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
++|++|+.+++=+.+.. .+ .........-++ +|++.-..++ ..++|++|+.+..++++. ..+. ....
T Consensus 214 ~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT---~~~~-~d~~ 281 (419)
T PRK04043 214 TLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQIT---NYPG-IDVN 281 (419)
T ss_pred EEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcc---cCCC-ccCc
Confidence 79999999987776652 11 111111222234 5555433222 367999999999998885 2222 1111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCC---CcCeEEE
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLI 329 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~---~~~~v~~ 329 (522)
....-+++.|++.-... -..++|++|+.++..+++...+. .......-++.|.......... ...++++
T Consensus 282 p~~SPDG~~I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v 353 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRL---GYPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYL 353 (419)
T ss_pred cEECCCCCEEEEEECCC---CCceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence 12223455566554332 23589999999998877764321 1111111244454444322211 2358999
Q ss_pred EECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 330 yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+|+++..++.+.... . .. ...+..+++ .|+..... .....++.++++.+.
T Consensus 354 ~d~~~g~~~~LT~~~------~-~~-~p~~SPDG~-~I~f~~~~--~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 354 ISTNSDYIRRLTANG------V-NQ-FPRFSSDGG-SIMFIKYL--GNQSALGIIRLNYNK 403 (419)
T ss_pred EECCCCCeEECCCCC------C-cC-CeEECCCCC-EEEEEEcc--CCcEEEEEEecCCCe
Confidence 999999998876421 1 11 122333333 34333322 223467778777654
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.23 E-value=6 Score=40.61 Aligned_cols=112 Identities=21% Similarity=0.276 Sum_probs=60.8
Q ss_pred ECCEEEEEcccCCCCCccCcEEEEEcCCCcEE-EeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC
Q 009910 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (522)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 284 (522)
-+|+|++.|+..+ .+.+||.++..-- .+.. ...|.-+.. .+..++. ++++|+-+. -+-.+|..+
T Consensus 78 ~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~a-h~apv~~~~--f~~~d~t-~l~s~sDd~-----v~k~~d~s~ 142 (487)
T KOG0310|consen 78 SDGRLLAAGDESG------HVKVFDMKSRVILRQLYA-HQAPVHVTK--FSPQDNT-MLVSGSDDK-----VVKYWDLST 142 (487)
T ss_pred cCCeEEEccCCcC------cEEEeccccHHHHHHHhh-ccCceeEEE--ecccCCe-EEEecCCCc-----eEEEEEcCC
Confidence 4799999997654 4889996653211 1110 012211111 1223444 888887543 245556655
Q ss_pred CcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCC-ceEE
Q 009910 285 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-EWSV 339 (522)
Q Consensus 285 ~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~-~W~~ 339 (522)
.. .+....+..-.-|++ ++.-.++.|++.||+++. |..||+.+. .|..
T Consensus 143 a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 143 AY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDGK-----VRLWDTRSLTSRVV 191 (487)
T ss_pred cE-EEEEecCCcceeEee-ccccCCCeEEEecCCCce-----EEEEEeccCCceeE
Confidence 54 232322222222322 222347899999999976 888998877 4443
No 100
>PRK04792 tolB translocation protein TolB; Provisional
Probab=89.75 E-value=29 Score=36.48 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=78.3
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCcc-ceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
..+|++|+.+.+-+.+... +... ..+....++.|++....+ ...++|.+|+.+++.+.+...
T Consensus 242 ~~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~- 304 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRH- 304 (448)
T ss_pred cEEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccC-
Confidence 4688888877665555431 1111 112222245565553322 135799999999988776531
Q ss_pred CCCCCCcceEEEEECC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCC
Q 009910 193 DIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (522)
Q Consensus 193 ~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~ 271 (522)
. .........-++ .|++.....+ ..++|++|+.+.+++.+...+.. ....+..-+++.|++.+ ...
T Consensus 305 --~-~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~-~~~- 371 (448)
T PRK04792 305 --R-AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVN-RTN- 371 (448)
T ss_pred --C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEE-ecC-
Confidence 1 111111122244 4544432221 25799999999999887522111 11122233555454443 222
Q ss_pred CCCCcEEEEEcCCCcEEEeee
Q 009910 272 KTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 272 ~~~~~v~~yd~~~~~W~~~~~ 292 (522)
....++.+|+.++..+.+..
T Consensus 372 -g~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 372 -GKFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -CceEEEEEECCCCCeEEccC
Confidence 13479999999988877653
No 101
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.49 E-value=18 Score=33.71 Aligned_cols=188 Identities=12% Similarity=0.129 Sum_probs=85.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++..+++|+.+ ..+..||..+.+....-. .. ...-.++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~---~~-~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTLT---GH-TSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEEe---cc-CCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCc
Confidence 34456666642 248888888753222111 11 1112222232 34666666522 35888998755
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE-EEeeeCCCCCCCccceEEEEE-CCEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC-GTKW 312 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~p~~r~~~~~~~~-~~~i 312 (522)
+-...- . .....-.++....+..+++.|..+ +.+..||+.+..- ..+.. ....-.++... +++.
T Consensus 126 ~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 126 KCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTG-----HTGEVNSVAFSPDGEK 191 (289)
T ss_pred EEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEec-----CccccceEEECCCcCE
Confidence 433221 1 111112233333434245544422 3588999864332 12211 11111222333 3445
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+++++.+ ..+.+||+.+.+....- .. ... ....+.+.. ...+++.++.+ ..+.+|++.+.+
T Consensus 192 l~~~~~~-----~~i~i~d~~~~~~~~~~--~~---~~~-~i~~~~~~~--~~~~~~~~~~~----~~i~i~~~~~~~ 252 (289)
T cd00200 192 LLSSSSD-----GTIKLWDLSTGKCLGTL--RG---HEN-GVNSVAFSP--DGYLLASGSED----GTIRVWDLRTGE 252 (289)
T ss_pred EEEecCC-----CcEEEEECCCCceecch--hh---cCC-ceEEEEEcC--CCcEEEEEcCC----CcEEEEEcCCce
Confidence 5555543 34889998764433221 10 111 122233332 24466555522 258888877543
No 102
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.12 E-value=7.7 Score=37.28 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=72.8
Q ss_pred ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
.++.+|.--|..+. +.+.++|+++.+-.... ++|..-++-.++.++++ ||..==. .+..++||+++
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~-l~qLTWk-----~~~~f~yd~~t- 119 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDK-LYQLTWK-----EGTGFVYDPNT- 119 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTE-EEEEESS-----SSEEEEEETTT-
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCE-EEEEEec-----CCeEEEEcccc-
Confidence 56889987776543 67999999998866554 67777788888899998 7776322 24689999875
Q ss_pred cEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCce
Q 009910 286 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (522)
Q Consensus 286 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W 337 (522)
.+.+... +.+..+.+.+..+..+++--|. +.++.+||++.+=
T Consensus 120 -l~~~~~~---~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 120 -LKKIGTF---PYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKE 161 (264)
T ss_dssp -TEEEEEE---E-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SE
T ss_pred -ceEEEEE---ecCCcceEEEcCCCEEEEECCc------cceEEECCcccce
Confidence 4555544 4556788888778888888774 4599999987543
No 103
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.79 E-value=48 Score=37.71 Aligned_cols=185 Identities=11% Similarity=0.096 Sum_probs=87.1
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
+..++.|+.+. .+..||..+++-...-. .....-.+++.. ++.+++.||.++. +.+||+.+.
T Consensus 545 ~~~las~~~Dg------~v~lWd~~~~~~~~~~~----~H~~~V~~l~~~p~~~~~L~Sgs~Dg~------v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFEG------VVQVWDVARSQLVTEMK----EHEKRVWSIDYSSADPTLLASGSDDGS------VKLWSINQG 608 (793)
T ss_pred CCEEEEEeCCC------eEEEEECCCCeEEEEec----CCCCCEEEEEEcCCCCCEEEEEcCCCE------EEEEECCCC
Confidence 45556666532 47888887765322110 111112233332 4677888876543 778888764
Q ss_pred cE-EEeecCCCCCCCCcceEEEEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEeeeCCCCCCCccceEEEEEC
Q 009910 235 TW-LPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCG 309 (522)
Q Consensus 235 ~W-~~~~~~g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~p~~r~~~~~~~~~ 309 (522)
.- ..+. .. ....++.+ .+..+++.|+.++ .+..||+.+.. ...+... .. .-..+...+
T Consensus 609 ~~~~~~~----~~---~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~h---~~--~V~~v~f~~ 671 (793)
T PLN00181 609 VSIGTIK----TK---ANICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIGH---SK--TVSYVRFVD 671 (793)
T ss_pred cEEEEEe----cC---CCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCCccceEecCC---CC--CEEEEEEeC
Confidence 32 2221 11 11122222 2233677776543 58999986542 1122111 11 111222235
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCC----ceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEE
Q 009910 310 TKWYIAGGGSRKKRHAETLIFDILKG----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 385 (522)
Q Consensus 310 ~~iyi~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~ 385 (522)
+..++.|+.++. +.++|+... .|..+...... ......+.+... +.+++.|+.++ .|.+|+
T Consensus 672 ~~~lvs~s~D~~-----ikiWd~~~~~~~~~~~~l~~~~gh----~~~i~~v~~s~~--~~~lasgs~D~----~v~iw~ 736 (793)
T PLN00181 672 SSTLVSSSTDNT-----LKLWDLSMSISGINETPLHSFMGH----TNVKNFVGLSVS--DGYIATGSETN----EVFVYH 736 (793)
T ss_pred CCEEEEEECCCE-----EEEEeCCCCccccCCcceEEEcCC----CCCeeEEEEcCC--CCEEEEEeCCC----EEEEEE
Confidence 666777776543 778887543 23322221111 001122333322 34677777654 477777
Q ss_pred cccC
Q 009910 386 IEKN 389 (522)
Q Consensus 386 ~~~~ 389 (522)
....
T Consensus 737 ~~~~ 740 (793)
T PLN00181 737 KAFP 740 (793)
T ss_pred CCCC
Confidence 5543
No 104
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.15 E-value=35 Score=35.28 Aligned_cols=264 Identities=11% Similarity=0.023 Sum_probs=126.6
Q ss_pred CCCceEEeeecCCCCCCccceEEEEE--C-CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCC-c
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVI--G-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA-C 147 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-r 147 (522)
...+|+++.. +....+.-..+..+ + +.-+++|-.. -+..=+-...+|........ ..... .
T Consensus 73 ~G~~W~q~~~--p~~~~~~L~~V~F~~~d~~~GwAVG~~G------~IL~T~DGG~tW~~~~~~~~-------~~~~~~~ 137 (398)
T PLN00033 73 QSSEWEQVDL--PIDPGVVLLDIAFVPDDPTHGFLLGTRQ------TLLETKDGGKTWVPRSIPSA-------EDEDFNY 137 (398)
T ss_pred CCCccEEeec--CCCCCCceEEEEeccCCCCEEEEEcCCC------EEEEEcCCCCCceECccCcc-------ccccccc
Confidence 5668999962 11122344455552 2 4788888421 12222223569998642100 01111 1
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcE
Q 009910 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDL 226 (522)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 226 (522)
...++...++..|++|-.. .++.-+-.-.+|+.++....+|.. .+..... ++.++++|.. ..+
T Consensus 138 ~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~-------G~v 201 (398)
T PLN00033 138 RFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE-------GAI 201 (398)
T ss_pred ceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc-------ceE
Confidence 2344445577888885431 243333345789988642233433 2233334 3567777632 225
Q ss_pred EEEEcCCCcEEEeecCC-CCCCC--------------CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCcEEEe
Q 009910 227 HMFDLKSLTWLPLHCTG-TGPSP--------------RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRI 290 (522)
Q Consensus 227 ~~yd~~t~~W~~~~~~g-~~p~~--------------r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~ 290 (522)
++-+-.-.+|+.+.... ..+.. -....+....+..++++|-. ..+++-+.. ...|+.+
T Consensus 202 ~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------G~~~~s~d~G~~~W~~~ 275 (398)
T PLN00033 202 YVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------GNFYLTWEPGQPYWQPH 275 (398)
T ss_pred EEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC------ccEEEecCCCCcceEEe
Confidence 55544557899862110 00111 11122233344436666532 134443333 3348988
Q ss_pred eeCCCCCCCccceEEEE-ECCEEEEEcccCCCCCcCeEEEEECCCCce-----EEeccCCCCCCCCCCCcEEEEEeeCCc
Q 009910 291 KIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEW-----SVAITSPSSSVTSNKGFTLVLVQHKEK 364 (522)
Q Consensus 291 ~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W-----~~~~~~p~~~~~~r~~~~~~~~~~~~~ 364 (522)
... .++...++.. .++.++++|... .++.-+.....| ..+.. . ..+.....+... ++
T Consensus 276 ~~~----~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~---~--~~~~~l~~v~~~--~d 338 (398)
T PLN00033 276 NRA----SARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADI---K--SRGFGILDVGYR--SK 338 (398)
T ss_pred cCC----CccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeeccc---C--CCCcceEEEEEc--CC
Confidence 653 3333334333 377888877542 255554445544 44331 1 122223333333 34
Q ss_pred cEEEEEcCCCCCCCCcEEEEEcccCCcccc
Q 009910 365 DFLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (522)
Q Consensus 365 ~~l~v~GG~~~~~~~~v~~y~~~~~~w~~~ 394 (522)
+.+++.|..+ .+.+-.-...+|...
T Consensus 339 ~~~~a~G~~G-----~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 339 KEAWAAGGSG-----ILLRSTDGGKSWKRD 363 (398)
T ss_pred CcEEEEECCC-----cEEEeCCCCcceeEc
Confidence 5688888764 244444455667765
No 105
>PRK04922 tolB translocation protein TolB; Provisional
Probab=87.94 E-value=37 Score=35.42 Aligned_cols=145 Identities=10% Similarity=0.036 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccce
Q 009910 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (522)
Q Consensus 224 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~ 303 (522)
..++++|+.+.+-+.+. ..+... ......-+++.|++....++ ..+++++|+.++.-+++... +. ...
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~~-~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~--~~~ 295 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGIN-GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG--IDT 295 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCCc-cCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC--Ccc
Confidence 56999999988877765 232211 11122234554544322221 24799999998877666432 11 111
Q ss_pred EEEEE-CC-EEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcE
Q 009910 304 CGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 381 (522)
Q Consensus 304 ~~~~~-~~-~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v 381 (522)
..... ++ +|++.....+ ..++|.+|..+.+.+.+.... ... ....+..++ ..|+...+..+ ...+
T Consensus 296 ~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g------~~~-~~~~~SpDG-~~Ia~~~~~~~--~~~I 362 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG------NYN-ARASVSPDG-KKIAMVHGSGG--QYRI 362 (433)
T ss_pred ceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC------CCc-cCEEECCCC-CEEEEEECCCC--ceeE
Confidence 11222 44 4544432222 257999999888887765211 111 122333333 44554433222 2368
Q ss_pred EEEEcccCCccc
Q 009910 382 EVLSIEKNESSM 393 (522)
Q Consensus 382 ~~y~~~~~~w~~ 393 (522)
+++|+.+.+...
T Consensus 363 ~v~d~~~g~~~~ 374 (433)
T PRK04922 363 AVMDLSTGSVRT 374 (433)
T ss_pred EEEECCCCCeEE
Confidence 899987776543
No 106
>PTZ00421 coronin; Provisional
Probab=87.53 E-value=43 Score=35.70 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=51.4
Q ss_pred CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE
Q 009910 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (522)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 287 (522)
+.+++.||.+. .+.++|+.+.+-...- . .... .-.+++...+..+++.|+.++ .+.+||+.++.-
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l-~-~h~~--~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVI-K-CHSD--QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEE-c-CCCC--ceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcE
Confidence 35777777543 3788898876432211 0 1111 112233333333777777654 488999987642
Q ss_pred E-EeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 288 T-RIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 288 ~-~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
. .+... ...+. ..++.. ++..++..|.+.. ....+.+||+.+.
T Consensus 203 v~tl~~H---~~~~~-~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~ 247 (493)
T PTZ00421 203 VSSVEAH---ASAKS-QRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKM 247 (493)
T ss_pred EEEEecC---CCCcc-eEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCC
Confidence 1 12111 11111 112222 3334444443321 1245888998654
No 107
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=86.78 E-value=30 Score=33.17 Aligned_cols=149 Identities=15% Similarity=0.148 Sum_probs=84.3
Q ss_pred ccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEE-EeeecCCCCCCCcc---------eE---EEEECCEEEEE
Q 009910 147 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSG---------HT---VVRASSVLILF 213 (522)
Q Consensus 147 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~---------~~---~~~~~~~iyv~ 213 (522)
..|.+.+++++.+|.--. ....+.+||+.+++-. ... +|.+... ++ .++.++-|+|+
T Consensus 69 ~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~----L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvI 138 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRE----LPGAGYNNRFPYYWSGYTDIDFAVDENGLWVI 138 (250)
T ss_pred eccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEE----CCccccccccceecCCCceEEEEEcCCCEEEE
Confidence 356777888999887533 3557999999998865 332 3433332 11 23445667777
Q ss_pred cccCCCCCccCcEEEEEcCCC----cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE
Q 009910 214 GGEDGKRRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (522)
Q Consensus 214 GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (522)
=....+. -.--+-..|+.+. +|.. ..+.+..+. +-++.|- ||+....+... ..-.+.||+.+++=..
T Consensus 139 Yat~~~~-g~ivvskld~~tL~v~~tw~T-----~~~k~~~~n-aFmvCGv-LY~~~s~~~~~-~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 139 YATEDNN-GNIVVSKLDPETLSVEQTWNT-----SYPKRSAGN-AFMVCGV-LYATDSYDTRD-TEIFYAFDTYTGKEED 209 (250)
T ss_pred EecCCCC-CcEEEEeeCcccCceEEEEEe-----ccCchhhcc-eeeEeeE-EEEEEECCCCC-cEEEEEEECCCCceec
Confidence 5443321 1123455677654 4553 334433333 4455566 88886654332 3446899998876655
Q ss_pred eeeCCCCCCCccceEEEEE---CCEEEEEc
Q 009910 290 IKIRGFHPSPRAGCCGVLC---GTKWYIAG 316 (522)
Q Consensus 290 ~~~~~~~p~~r~~~~~~~~---~~~iyi~G 316 (522)
+... .+.+-...+++-. +.+||+.-
T Consensus 210 ~~i~--f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 210 VSIP--FPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eeee--eccccCceEeeeECCCCCeEEEEE
Confidence 4432 2333334444443 67898874
No 108
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.14 E-value=29 Score=32.27 Aligned_cols=189 Identities=11% Similarity=0.082 Sum_probs=84.3
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.++++|+.+ ..+..||..+.+-..... ...... ..+... ++..+++++.+ ..+.+||..+.
T Consensus 20 ~~~~l~~~~~~------g~i~i~~~~~~~~~~~~~---~~~~~i-~~~~~~~~~~~l~~~~~~------~~i~i~~~~~~ 83 (289)
T cd00200 20 DGKLLATGSGD------GTIKVWDLETGELLRTLK---GHTGPV-RDVAASADGTYLASGSSD------KTIRLWDLETG 83 (289)
T ss_pred CCCEEEEeecC------cEEEEEEeeCCCcEEEEe---cCCcce-eEEEECCCCCEEEEEcCC------CeEEEEEcCcc
Confidence 34666666642 247777777665221111 111111 122222 34566666643 45888998775
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEEC-CEEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWY 313 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iy 313 (522)
+....- . .....-.++....+..+++.|+.+ ..+..||+.+..-...-. .....-.++.... +.++
T Consensus 84 ~~~~~~---~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 84 ECVRTL---T-GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred cceEEE---e-ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEE
Confidence 322221 1 111112233333333366665533 358899987543222211 1111122233333 4554
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.|..++ .+.+||+.+.+-...- .. .......+.+.. .+..+++++.+ ..+.+||+...+
T Consensus 151 ~~~~~~~-----~i~i~d~~~~~~~~~~--~~----~~~~i~~~~~~~--~~~~l~~~~~~----~~i~i~d~~~~~ 210 (289)
T cd00200 151 ASSSQDG-----TIKLWDLRTGKCVATL--TG----HTGEVNSVAFSP--DGEKLLSSSSD----GTIKLWDLSTGK 210 (289)
T ss_pred EEEcCCC-----cEEEEEccccccceeE--ec----CccccceEEECC--CcCEEEEecCC----CcEEEEECCCCc
Confidence 4444233 4889998754322211 11 111122233332 22244555542 368889887654
No 109
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.11 E-value=38 Score=33.65 Aligned_cols=138 Identities=19% Similarity=0.215 Sum_probs=79.1
Q ss_pred CEEEEEcccCCCCC---Cc-eeEEEEECCCC-----cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEE
Q 009910 157 KKVLLVGGKTDSGS---DR-VSVWTFDTETE-----CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (522)
Q Consensus 157 ~~iyv~GG~~~~~~---~~-~~v~~yd~~t~-----~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 227 (522)
...+++|....... .. ..+..|+.... +++.+.. ....-.-.+++.++++|++.-| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCCEEEEeec--------CEEE
Confidence 46666665533222 22 66899998885 5666543 2222335667778999666544 4588
Q ss_pred EEEcCCCc-EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEE
Q 009910 228 MFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (522)
Q Consensus 228 ~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~ 306 (522)
+|++...+ +.... ....+-...+..+.++. |+ +|-...+ -.++.|+.+..+-..+... +.++...++.
T Consensus 111 v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~-I~-vgD~~~s---v~~~~~~~~~~~l~~va~d---~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKA---FYDSPFYITSLSVFKNY-IL-VGDAMKS---VSLLRYDEENNKLILVARD---YQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEE---EE-BSSSEEEEEEETTE-EE-EEESSSS---EEEEEEETTTE-EEEEEEE---SS-BEEEEEE
T ss_pred EEEccCcccchhhh---eecceEEEEEEeccccE-EE-EEEcccC---EEEEEEEccCCEEEEEEec---CCCccEEEEE
Confidence 88888887 88876 44444455555566664 44 4432111 1355667766667777765 5677766776
Q ss_pred EE-CCEEEEEc
Q 009910 307 LC-GTKWYIAG 316 (522)
Q Consensus 307 ~~-~~~iyi~G 316 (522)
.+ ++..++++
T Consensus 180 ~l~d~~~~i~~ 190 (321)
T PF03178_consen 180 FLVDEDTIIVG 190 (321)
T ss_dssp EE-SSSEEEEE
T ss_pred EecCCcEEEEE
Confidence 66 55544443
No 110
>PRK02889 tolB translocation protein TolB; Provisional
Probab=86.10 E-value=47 Score=34.65 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=75.4
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
..+|.+|+.+++=..+.. .+.. .......-++ +|++....++ ..++|.+|..+...+++.. .. ....
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g~-~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKGS-NSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ---SS-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCCC-ccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC---CC-CCCc
Confidence 459999999887555542 2211 1111222234 5554433222 3679999998877666641 11 1111
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECC-EEEEEcccCCCCCcCeEEE
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGT-KWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~-~iyi~GG~~~~~~~~~v~~ 329 (522)
.....-+++.|++.....+ ..++|.++..+...+.+...+ ........ -++ .|+......+ ...+++
T Consensus 288 ~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v 356 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG---AFKLYV 356 (427)
T ss_pred CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---cEEEEE
Confidence 1222334554443322111 247999998888777775321 11111222 234 4544433222 136999
Q ss_pred EECCCCceEEec
Q 009910 330 FDILKGEWSVAI 341 (522)
Q Consensus 330 yd~~~~~W~~~~ 341 (522)
+|+.+.+.+.+.
T Consensus 357 ~d~~~g~~~~lt 368 (427)
T PRK02889 357 QDLATGQVTALT 368 (427)
T ss_pred EECCCCCeEEcc
Confidence 999888877664
No 111
>smart00284 OLF Olfactomedin-like domains.
Probab=85.94 E-value=34 Score=32.87 Aligned_cols=191 Identities=14% Similarity=0.073 Sum_probs=97.4
Q ss_pred CCEEEEEcccCCCCCCceeEEEEEC----CCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDT----ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~----~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
++++|++.+.. ...+.++.|.. ....+...- .+|.+-.+...++++|.+|.--. ....+-+||+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL 101 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence 47889886653 12344767743 233443322 37877788888999999999532 2467999999
Q ss_pred CCCcEEEeecCCCCCCCCc------------ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCC
Q 009910 232 KSLTWLPLHCTGTGPSPRS------------NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~------------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~ 299 (522)
.+.+-.... .+|.+.+ ..-.++-+++...|+....... .=-|-.+|+.+..-.+.-.. ..+.
T Consensus 102 ~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvSkLnp~tL~ve~tW~T-~~~k- 175 (255)
T smart00284 102 TTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVISKLNPATLTIENTWIT-TYNK- 175 (255)
T ss_pred CCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEEeeCcccceEEEEEEc-CCCc-
Confidence 998765333 2332211 1122333344222332211110 11234667766544333333 1122
Q ss_pred ccceEEEEECCEEEEEcccCCCCCcCe-EEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEE
Q 009910 300 RAGCCGVLCGTKWYIAGGGSRKKRHAE-TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (522)
Q Consensus 300 r~~~~~~~~~~~iyi~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~ 370 (522)
+....|.++=|.||++-... ..-.+ .+.||+.+.+=.. ...|. +.....++++-.+..+ .+||+.
T Consensus 176 ~sa~naFmvCGvLY~~~s~~--~~~~~I~yayDt~t~~~~~-~~i~f--~n~y~~~s~l~YNP~d-~~LY~w 241 (255)
T smart00284 176 RSASNAFMICGILYVTRSLG--SKGEKVFYAYDTNTGKEGH-LDIPF--ENMYEYISMLDYNPND-RKLYAW 241 (255)
T ss_pred ccccccEEEeeEEEEEccCC--CCCcEEEEEEECCCCccce-eeeee--ccccccceeceeCCCC-CeEEEE
Confidence 22224555678899885311 11233 4789998876332 21222 2333344444444333 466654
No 112
>PRK03629 tolB translocation protein TolB; Provisional
Probab=84.07 E-value=58 Score=33.99 Aligned_cols=146 Identities=15% Similarity=0.147 Sum_probs=76.7
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
..++.+|+.+++-+.+.. .+..-. .....-++ +|++.....+ ..+++++|+++.+.+++. ..+.. .
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~~-~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt---~~~~~--~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHNG-APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVT---DGRSN--N 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCcC-CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEcc---CCCCC--c
Confidence 469999998887666542 222111 11222234 5555433222 235999999998887774 22211 1
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECC-EEEEEcccCCCCCcCeEEE
Q 009910 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 252 ~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyi~GG~~~~~~~~~v~~ 329 (522)
...... +++.| +|..... -..++|.+|+.+..-+++...+ .........-++ .|++.+...+ ..+++.
T Consensus 290 ~~~~wSPDG~~I-~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~ 359 (429)
T PRK03629 290 TEPTWFPDSQNL-AYTSDQA--GRPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---QQHIAK 359 (429)
T ss_pred CceEECCCCCEE-EEEeCCC--CCceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---CceEEE
Confidence 122222 44433 3332211 1247999999888777664321 111111112244 4444443222 246999
Q ss_pred EECCCCceEEec
Q 009910 330 FDILKGEWSVAI 341 (522)
Q Consensus 330 yd~~~~~W~~~~ 341 (522)
+|+.+.+++.+.
T Consensus 360 ~dl~~g~~~~Lt 371 (429)
T PRK03629 360 QDLATGGVQVLT 371 (429)
T ss_pred EECCCCCeEEeC
Confidence 999999888766
No 113
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=83.81 E-value=64 Score=34.33 Aligned_cols=146 Identities=15% Similarity=0.100 Sum_probs=69.8
Q ss_pred ceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEE-----ECC---EEEEEcccCCCCCccCcEEEEEcCCCc--EEEe
Q 009910 172 RVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVR-----ASS---VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (522)
Q Consensus 172 ~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~-----~~~---~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 239 (522)
.+.++.+|.++++ |+.-....+....+....... .++ .+.++|..+ ..++.+|.++.+ |+.-
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~------G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN------GFFYVLDRTTGKLISARP 328 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC------ceEEEEECCCCcEeeEeE
Confidence 4579999999876 875432111110011111111 222 234444332 348999998865 8754
Q ss_pred ecCCCCCCCCcceEEEEECCcEEEEEcCCC------------CCCCCCcEEEEEcCCC--cEEEeeeCCC-C---CCCcc
Q 009910 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSS------------KSKTLNDLYSLDFETM--IWTRIKIRGF-H---PSPRA 301 (522)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~------------~~~~~~~v~~yd~~~~--~W~~~~~~~~-~---p~~r~ 301 (522)
.. .. .++... ..+|+-.... .......++.+|..++ .|+.-..... . ..+..
T Consensus 329 ~~--~~-------~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~ 398 (488)
T cd00216 329 EV--EQ-------PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW 398 (488)
T ss_pred ee--cc-------ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence 31 00 011111 3255532110 0112346899998765 4776432100 0 01122
Q ss_pred ceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCc--eEE
Q 009910 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE--WSV 339 (522)
Q Consensus 302 ~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~--W~~ 339 (522)
....++.++.||+ |..+ ..++.+|.++.+ |+.
T Consensus 399 ~~~~~~~g~~v~~-g~~d-----G~l~ald~~tG~~lW~~ 432 (488)
T cd00216 399 GGSLATAGNLVFA-GAAD-----GYFRAFDATTGKELWKF 432 (488)
T ss_pred CcceEecCCeEEE-ECCC-----CeEEEEECCCCceeeEE
Confidence 2234444555554 4433 349999998864 764
No 114
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.63 E-value=52 Score=33.13 Aligned_cols=250 Identities=14% Similarity=0.145 Sum_probs=117.0
Q ss_pred EEcCcCCCCCcccE--EEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEEC
Q 009910 103 VVGGESGNGLLDDV--QVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 180 (522)
Q Consensus 103 v~GG~~~~~~~~~v--~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 180 (522)
++|++.. .....+ +.||..+.+++.+..... ......-+.-..++.||+..... .....-..+..+.
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~---------~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~ 71 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAE---------GENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDP 71 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEE---------SSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEET
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecC---------CCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECC
Confidence 3455543 222344 455668888887765211 00001111112357788885432 1222334555566
Q ss_pred CCCcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCCccCcEEEEEcCCC-cEEEee------cCCCC---CC
Q 009910 181 ETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLH------CTGTG---PS 247 (522)
Q Consensus 181 ~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~------~~g~~---p~ 247 (522)
++.+.+.+.. .+..-...+-+.+ +..||+. -+. ...+.+|++..+ +-.... ..++- ..
T Consensus 72 ~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 72 DTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp TTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred CcceeEEeee---eccCCCCcEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 6678887764 3322222222333 3455654 221 245778887764 222211 00111 12
Q ss_pred CCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCC
Q 009910 248 PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKK 322 (522)
Q Consensus 248 ~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~ 322 (522)
.-..|.+.... ++.+|+..= -.+.|++|+.+... .+...... .|..-.-..++.. +..+|++.-.+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s--- 213 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELS--- 213 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTT---
T ss_pred cccceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCC---
Confidence 23345555554 455666531 14578888887655 65543321 1221111122333 45899987654
Q ss_pred CcCeEEEEECC--CCceEEeccCCCC--CCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 323 RHAETLIFDIL--KGEWSVAITSPSS--SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 323 ~~~~v~~yd~~--~~~W~~~~~~p~~--~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
+.|.+|+.. +..++.+...+.- ........+.+.+. .+..+||+.--. .+.|-+|+++.
T Consensus 214 --~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~----~~sI~vf~~d~ 276 (345)
T PF10282_consen 214 --NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRG----SNSISVFDLDP 276 (345)
T ss_dssp --TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECT----TTEEEEEEECT
T ss_pred --CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe-cCCCEEEEEecc----CCEEEEEEEec
Confidence 336555544 6666665432221 11222234444454 344577764322 45788888843
No 115
>PTZ00421 coronin; Provisional
Probab=83.60 E-value=66 Score=34.31 Aligned_cols=156 Identities=16% Similarity=0.115 Sum_probs=72.7
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
+.+++.||.+. .+.++|+.+.+-...-. .... .-.+++ ..++.+++.|+.+. .+.+||+.+.+
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~--~h~~--~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVIK--CHSD--QITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEEc--CCCC--ceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 45777777542 48888988765322110 0111 111222 23577788877654 37889998765
Q ss_pred EE-EeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEE
Q 009910 236 WL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 312 (522)
Q Consensus 236 W~-~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~i 312 (522)
-. .+. .....+........++. .++..|.+.. .-+.+..||+.+..-. +.... ... ........+ ++.+
T Consensus 202 ~v~tl~---~H~~~~~~~~~w~~~~~-~ivt~G~s~s-~Dr~VklWDlr~~~~p-~~~~~-~d~-~~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 202 IVSSVE---AHASAKSQRCLWAKRKD-LIITLGCSKS-QQRQIMLWDTRKMASP-YSTVD-LDQ-SSALFIPFFDEDTNL 273 (493)
T ss_pred EEEEEe---cCCCCcceEEEEcCCCC-eEEEEecCCC-CCCeEEEEeCCCCCCc-eeEec-cCC-CCceEEEEEcCCCCE
Confidence 22 221 11111111112222334 4444444321 1246889998653211 11100 000 111122222 4556
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceEEe
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGEWSVA 340 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (522)
+++||... ..|.+||+.+.+....
T Consensus 274 L~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 274 LYIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred EEEEEeCC----CeEEEEEeeCCceEEE
Confidence 66666422 2388888887775543
No 116
>PRK04043 tolB translocation protein TolB; Provisional
Probab=83.59 E-value=60 Score=33.81 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=101.9
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
.++|++|+.+.+=+.+... +......... .+.+|++.-... ...++|.+|..++.++.+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~-- 274 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITN-- 274 (419)
T ss_pred CEEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEccc--
Confidence 3789999887765555431 1111111122 234555543322 13579999999999988863
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCC
Q 009910 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272 (522)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~ 272 (522)
.+..-....-...+.+|+..-...+ ..+++++|+.+.+.+++...+. .. ....-+++.|..........
T Consensus 275 -~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 275 -YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred -CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cC-ceECCCCCEEEEEEcCCCcc
Confidence 2211111111112346666543321 3579999999998877753221 22 23334555444333222111
Q ss_pred ---CCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCE-EEEEcccCCCCCcCeEEEEECCCCceEEec
Q 009910 273 ---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 273 ---~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~-iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
...+++.+|++++.++.+...+ ........-+++ |++.... .....++.++++.+.=..++
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~---~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL---GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc---CCcEEEEEEecCCCeeEEee
Confidence 2358999999999998886531 111111222444 4444322 22356888888776655554
No 117
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=83.40 E-value=86 Score=35.44 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=100.4
Q ss_pred CCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCc------cceEEEEECCEEEEEcCcCCCCCcc
Q 009910 41 SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPR------FNHAAAVIGNKMIVVGGESGNGLLD 114 (522)
Q Consensus 41 ~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R------~~~~~~~~~~~iyv~GG~~~~~~~~ 114 (522)
.+....+||...+..+..+.++-.-|.. .-...|+--. ++.+.++ ...+-+++++.||+... .+
T Consensus 135 ~~~W~~yg~~~~~~RySpL~qIn~~NV~--~L~~aWt~~t--Gd~~~~~~~~~~~~e~TPlvvgg~lYv~t~------~~ 204 (764)
T TIGR03074 135 AGDWAAYGRTQAGQRYSPLDQINPDNVG--NLKVAWTYHT--GDLKTPDDPGEATFQATPLKVGDTLYLCTP------HN 204 (764)
T ss_pred CCCccccCCCCcccccCcccccCccccc--CceEEEEEEC--CCccccccccccccccCCEEECCEEEEECC------CC
Confidence 3446677775544433322221111111 2345677643 3333322 23455678999999754 35
Q ss_pred cEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceE----------------EEEECCEEEEEcccCCCCCCceeEE
Q 009910 115 DVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHS----------------LISWGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 115 ~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~----------------~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
.++.+|..+. .|+.-........ .....+++.+ .+..+++||+ +..+ ..++
T Consensus 205 ~V~ALDa~TGk~lW~~d~~~~~~~~----~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~-~T~D------g~Li 273 (764)
T TIGR03074 205 KVIALDAATGKEKWKFDPKLKTEAG----RQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL-PTSD------ARLI 273 (764)
T ss_pred eEEEEECCCCcEEEEEcCCCCcccc----cccccccceEEecCCcccccccccccccccCCEEEE-ecCC------CeEE
Confidence 6888888864 6876554211000 0000011111 1122445654 3222 1377
Q ss_pred EEECCCCc--EEEee-----ec---CCCCCC--CcceEEEEECCEEEEEcccCCCC----CccCcEEEEEcCCCc--EEE
Q 009910 177 TFDTETEC--WSVVE-----AK---GDIPVA--RSGHTVVRASSVLILFGGEDGKR----RKLNDLHMFDLKSLT--WLP 238 (522)
Q Consensus 177 ~yd~~t~~--W~~~~-----~~---~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~----~~~~~v~~yd~~t~~--W~~ 238 (522)
.+|.+|++ |..-. -. ++.+.. ....+-++.++.||+ |+...++ .....+..||.+|.+ |+-
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 77877765 54210 00 111211 122333556777666 5542221 234568999999875 765
Q ss_pred eecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE
Q 009910 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (522)
Q Consensus 239 ~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 287 (522)
-.. -|... .....+. .|..||-+. =....||++++.-
T Consensus 353 ~~g---~p~~~----~~~~~g~-~~~~gg~n~----W~~~s~D~~~glv 389 (764)
T TIGR03074 353 DPG---NPDPT----APPAPGE-TYTRNTPNS----WSVASYDEKLGLV 389 (764)
T ss_pred ecC---CCCcc----cCCCCCC-EeccCCCCc----cCceEEcCCCCeE
Confidence 431 11110 1112455 676555332 1356788777654
No 118
>PLN00181 protein SPA1-RELATED; Provisional
Probab=83.38 E-value=88 Score=35.59 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=68.8
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcE-EEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
++.+++.||.+. .+..||+.+..- ..+.. .. .-.++.. .++.+++.|+.++ .+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~----~~--~v~~v~~~~~~g~~latgs~dg------~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT----KA--NICCVQFPSESGRSLAFGSADH------KVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec----CC--CeEEEEEeCCCCCEEEEEeCCC------eEEEEECC
Confidence 456777777643 378888876542 22211 11 1111222 2467788876543 48899987
Q ss_pred CCc--EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC----cEEEeeeCCCCCCCccceEEE
Q 009910 233 SLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----IWTRIKIRGFHPSPRAGCCGV 306 (522)
Q Consensus 233 t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~p~~r~~~~~~ 306 (522)
+.. ...+. ....+ -..+...++. .++.|+.++ .+.+||+... .|..+....... ......+.
T Consensus 649 ~~~~~~~~~~---~h~~~--V~~v~f~~~~-~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh~-~~i~~v~~ 716 (793)
T PLN00181 649 NPKLPLCTMI---GHSKT--VSYVRFVDSS-TLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMGHT-NVKNFVGL 716 (793)
T ss_pred CCCccceEec---CCCCC--EEEEEEeCCC-EEEEEECCC-----EEEEEeCCCCccccCCcceEEEcCCC-CCeeEEEE
Confidence 543 22221 10111 1122233555 566666543 4777887542 233332211001 11111122
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 307 LCGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 307 ~~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
..++.+++.|+.++. +.+|+...
T Consensus 717 s~~~~~lasgs~D~~-----v~iw~~~~ 739 (793)
T PLN00181 717 SVSDGYIATGSETNE-----VFVYHKAF 739 (793)
T ss_pred cCCCCEEEEEeCCCE-----EEEEECCC
Confidence 225667777776543 77777654
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=82.07 E-value=80 Score=34.17 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=63.9
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE---CCEEEEEcccCCCCCcCeEEE
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~~~v~~ 329 (522)
+++...+..++.+|-... -.+|++.++.+. .+...-..|..+...++... +++++++- ....+++.
T Consensus 387 ~~aiSPdg~~Ia~st~~~----~~iy~L~~~~~v--k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~ 455 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVSR----TKIYRLQPDPNV--KVINVDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEE 455 (691)
T ss_pred eeccCCCCCEEEEeeccc----eEEEEeccCcce--eEEEeccchhhhccceeeEEEecCceEEEEe-----cccceeEE
Confidence 344444433666654321 235555554422 22221223666666665543 67777765 23355777
Q ss_pred EECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 330 yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
++.++.+-..+...... +.... .+..++. .++.+|-++++.. .|.+|++++.+-
T Consensus 456 ~el~~ps~kel~~~~~~-~~~~~-I~~l~~S-sdG~yiaa~~t~g-----~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQ-AKCPS-ISRLVVS-SDGNYIAAISTRG-----QIFVYNLETLES 509 (691)
T ss_pred EEecCcchhhhhccccc-cCCCc-ceeEEEc-CCCCEEEEEeccc-----eEEEEEccccee
Confidence 88777666655432211 11111 2222222 3457888888654 699999998874
No 120
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.90 E-value=70 Score=33.35 Aligned_cols=190 Identities=8% Similarity=-0.015 Sum_probs=90.6
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
...+|..|.....-..+.. .+..-.. -...-+++.+++...... ...++++|+.+.+=..+. ..+.. ..
T Consensus 175 ~~~L~~~D~dG~~~~~l~~---~~~~v~~-p~wSPDG~~la~~s~~~~---~~~I~~~dl~~g~~~~l~---~~~g~-~~ 243 (427)
T PRK02889 175 RYQLQISDADGQNAQSALS---SPEPIIS-PAWSPDGTKLAYVSFESK---KPVVYVHDLATGRRRVVA---NFKGS-NS 243 (427)
T ss_pred ccEEEEECCCCCCceEecc---CCCCccc-ceEcCCCCEEEEEEccCC---CcEEEEEECCCCCEEEee---cCCCC-cc
Confidence 3468888886655454432 1111111 111224444444433221 246999999887655554 22211 11
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECC-EEEEEcccCCCCCcCeEEEE
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~iyi~GG~~~~~~~~~v~~y 330 (522)
..+..-+++.|++....++ ..++|.+|..+...+++... . .........-++ +|++..... ...++|.+
T Consensus 244 ~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~-~~~~~~~wSpDG~~l~f~s~~~---g~~~Iy~~ 313 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S-GIDTEPFFSPDGRSIYFTSDRG---GAPQIYRM 313 (427)
T ss_pred ceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C-CCCcCeEEcCCCCEEEEEecCC---CCcEEEEE
Confidence 1222234444544332222 35799999987776666432 1 111111112244 455443222 23578999
Q ss_pred ECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCcc
Q 009910 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESS 392 (522)
Q Consensus 331 d~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w~ 392 (522)
|..+...+.+.... .... ...+..++ ..|+......+ ...++++|+.+.+..
T Consensus 314 ~~~~g~~~~lt~~g------~~~~-~~~~SpDG-~~Ia~~s~~~g--~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 314 PASGGAAQRVTFTG------SYNT-SPRISPDG-KLLAYISRVGG--AFKLYVQDLATGQVT 365 (427)
T ss_pred ECCCCceEEEecCC------CCcC-ceEECCCC-CEEEEEEccCC--cEEEEEEECCCCCeE
Confidence 98887777665211 1111 12233333 34443333322 236888888776543
No 121
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.33 E-value=75 Score=32.75 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=104.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEEC-CEEEEEcccCCCCC-----ccCcEEEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRR-----KLNDLHMF 229 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~-----~~~~v~~y 229 (522)
+++.++++=. ..+.....++++|+++++...-. ++...... ++..+ ++.+++...+.... ....++++
T Consensus 134 dg~~la~~~s-~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 134 DGKRLAYSLS-DGGSEWYTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TSSEEEEEEE-ETTSSEEEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCEEEEEec-CCCCceEEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 4555555422 23445667999999999654322 23333322 44443 35555554443312 25679999
Q ss_pred EcCCCcEE--EeecCCCCCCCCc-ceEEE-EECCcEEEEEcCCCCCCCCCcEEEEEcCCC-----cEEEeeeCCCCCCCc
Q 009910 230 DLKSLTWL--PLHCTGTGPSPRS-NHVAA-LYDDKNLLIFGGSSKSKTLNDLYSLDFETM-----IWTRIKIRGFHPSPR 300 (522)
Q Consensus 230 d~~t~~W~--~~~~~g~~p~~r~-~~~~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~~~~p~~r 300 (522)
.+.+..-. .+- ..+.... ...+. .-+++.++|.-. .... .++++.+|.... .|..+... ..-
T Consensus 208 ~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~-~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~ 278 (414)
T PF02897_consen 208 KLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSS-SGTS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG 278 (414)
T ss_dssp ETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEE-SSSS-EEEEEEEECCCTTTSS-SEEEEEES----SSS
T ss_pred ECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEE-cccc-CCeEEEEeccccCCCcCCcEEEeCC----CCc
Confidence 98876543 221 2222222 22333 334554443322 2222 478999999875 78888653 222
Q ss_pred cceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCc---eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC
Q 009910 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE---WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 377 (522)
Q Consensus 301 ~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~ 377 (522)
..+.+...++.+||.-.. +.....+..+++.... |..+-..+. .......+.+. +++|++.-=.+ .
T Consensus 279 ~~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~----~~~~l~~~~~~---~~~Lvl~~~~~--~ 347 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPED----EDVSLEDVSLF---KDYLVLSYREN--G 347 (414)
T ss_dssp -EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--S----SSEEEEEEEEE---TTEEEEEEEET--T
T ss_pred eEEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcCCC----CceeEEEEEEE---CCEEEEEEEEC--C
Confidence 222333448999998653 2334678899988765 664322111 11111222221 24555433222 2
Q ss_pred CCcEEEEEcc
Q 009910 378 SNQVEVLSIE 387 (522)
Q Consensus 378 ~~~v~~y~~~ 387 (522)
...+.++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 4478888888
No 122
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=78.90 E-value=65 Score=31.20 Aligned_cols=243 Identities=11% Similarity=0.049 Sum_probs=123.4
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCC
Q 009910 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (522)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 193 (522)
.+=.+||.+.+=...+-- ....-|.+++- ++..++.-+. .-+-++|+++..-++.+...+
T Consensus 84 aiGhLdP~tGev~~ypLg------------~Ga~Phgiv~gpdg~~Witd~~-------~aI~R~dpkt~evt~f~lp~~ 144 (353)
T COG4257 84 AIGHLDPATGEVETYPLG------------SGASPHGIVVGPDGSAWITDTG-------LAIGRLDPKTLEVTRFPLPLE 144 (353)
T ss_pred cceecCCCCCceEEEecC------------CCCCCceEEECCCCCeeEecCc-------ceeEEecCcccceEEeecccc
Confidence 345678888776666531 11223444443 3455554221 148899999998887764333
Q ss_pred CCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCC
Q 009910 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (522)
Q Consensus 194 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~ 273 (522)
++..-....+.--.+.++..|-....+ ++||.++.-+..+ .|..-.-..+|+-.+..+++.-= .
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp----aPqG~gpyGi~atpdGsvwyasl-----a 208 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP----APQGGGPYGICATPDGSVWYASL-----A 208 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccccce-------ecCcccCceeeec----cCCCCCCcceEECCCCcEEEEec-----c
Confidence 333332222222236777776432221 5666666544432 22322223444444443666421 1
Q ss_pred CCcEEEEEcCCCcEEEeeeCCCCCCC-ccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCC
Q 009910 274 LNDLYSLDFETMIWTRIKIRGFHPSP-RAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS 350 (522)
Q Consensus 274 ~~~v~~yd~~~~~W~~~~~~~~~p~~-r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 350 (522)
-|-+-+.|+.+..=+.+.. |.+ ..+.--+.. -+++.+.-= ....+++||+....|..-.. |... +
T Consensus 209 gnaiaridp~~~~aev~p~----P~~~~~gsRriwsdpig~~wittw-----g~g~l~rfdPs~~sW~eypL-Pgs~--a 276 (353)
T COG4257 209 GNAIARIDPFAGHAEVVPQ----PNALKAGSRRIWSDPIGRAWITTW-----GTGSLHRFDPSVTSWIEYPL-PGSK--A 276 (353)
T ss_pred ccceEEcccccCCcceecC----CCcccccccccccCccCcEEEecc-----CCceeeEeCcccccceeeeC-CCCC--C
Confidence 2457788887775444433 222 111111211 356666521 12458999999999998654 3332 2
Q ss_pred CCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCccccccCCCCCCCCceEEeecCCCC
Q 009910 351 NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSS 415 (522)
Q Consensus 351 r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w~~~~~~~~~~~~~~~~~fgg~~~~ 415 (522)
| .+++ .++. .+++.. ..-..+.+..||+++.+.+.. ..+. ..++.+-++|.+..
T Consensus 277 r-pys~-rVD~--~grVW~----sea~agai~rfdpeta~ftv~--p~pr-~n~gn~ql~gr~ge 330 (353)
T COG4257 277 R-PYSM-RVDR--HGRVWL----SEADAGAIGRFDPETARFTVL--PIPR-PNSGNIQLDGRPGE 330 (353)
T ss_pred C-ccee-eecc--CCcEEe----eccccCceeecCcccceEEEe--cCCC-CCCCceeccCCCCc
Confidence 2 2333 3332 334542 112245788999998876654 2222 33335555665543
No 123
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.57 E-value=69 Score=30.24 Aligned_cols=173 Identities=12% Similarity=0.135 Sum_probs=94.6
Q ss_pred EECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCc-EEEEEcCCCCCCCCCcEEEEEcC
Q 009910 205 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFE 283 (522)
Q Consensus 205 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~ 283 (522)
..++.-+.-||-+ ..+..+|.+|.+-.+-- -.--..--++.+++. .+++-|+++. .+..||-.
T Consensus 68 s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNeesSVv~SgsfD~-----s~r~wDCR 131 (307)
T KOG0316|consen 68 SSDNSKFASCGGD------KAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNEESSVVASGSFDS-----SVRLWDCR 131 (307)
T ss_pred cccccccccCCCC------ceEEEEEcccCeeeeec-----ccccceeeEEEecCcceEEEeccccc-----eeEEEEcc
Confidence 3455556655543 34888999887532210 000001123444443 4666666653 48888988
Q ss_pred CCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCC
Q 009910 284 TMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE 363 (522)
Q Consensus 284 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~ 363 (522)
....+.+... ...+-+...+.+.+..+|.|-.++. +..||+..++-.. -..++....+....
T Consensus 132 S~s~ePiQil---dea~D~V~Si~v~~heIvaGS~DGt-----vRtydiR~G~l~s----------Dy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 132 SRSFEPIQIL---DEAKDGVSSIDVAEHEIVAGSVDGT-----VRTYDIRKGTLSS----------DYFGHPITSVSFSK 193 (307)
T ss_pred cCCCCccchh---hhhcCceeEEEecccEEEeeccCCc-----EEEEEeecceeeh----------hhcCCcceeEEecC
Confidence 8877777665 5667777888888888888776665 8899987766432 11122222222111
Q ss_pred ccEEEEEcCCCCCCCCcEEEEEcccCCccc--------cccCCCCCCCCceEEeecCCCC
Q 009910 364 KDFLVAFGGIKKEPSNQVEVLSIEKNESSM--------GRRSTPNAKGPGQLLFEKRSSS 415 (522)
Q Consensus 364 ~~~l~v~GG~~~~~~~~v~~y~~~~~~w~~--------~~~~~~~~~~~~~~~fgg~~~~ 415 (522)
.....++|-.+ ..+-.+|-++.+--. .+..-|........||+|+-+-
T Consensus 194 d~nc~La~~l~----stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 194 DGNCSLASSLD----STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred CCCEEEEeecc----ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc
Confidence 22233333332 235556655554211 1233333466677788887553
No 124
>PRK03629 tolB translocation protein TolB; Provisional
Probab=75.05 E-value=1.1e+02 Score=31.87 Aligned_cols=191 Identities=10% Similarity=-0.010 Sum_probs=92.3
Q ss_pred CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 171 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
....+|..|.+...=..+.. -+.. ...-...-+++.+++-..... ...++++|+.+.+-+.+. ..+..-.
T Consensus 177 ~~~~l~~~d~dg~~~~~lt~---~~~~-~~~p~wSPDG~~la~~s~~~g---~~~i~i~dl~~G~~~~l~---~~~~~~~ 246 (429)
T PRK03629 177 FPYELRVSDYDGYNQFVVHR---SPQP-LMSPAWSPDGSKLAYVTFESG---RSALVIQTLANGAVRQVA---SFPRHNG 246 (429)
T ss_pred cceeEEEEcCCCCCCEEeec---CCCc-eeeeEEcCCCCEEEEEEecCC---CcEEEEEECCCCCeEEcc---CCCCCcC
Confidence 35579999887654333331 1111 111112224443333222111 256899999888766654 2222111
Q ss_pred ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE-EEEEcccCCCCCcCeEE
Q 009910 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETL 328 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyi~GG~~~~~~~~~v~ 328 (522)
.....-+++.|++.....+ ..++|.+|++++..+++... +.. ....... +++ |+......+ ..++|
T Consensus 247 -~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~---~~~--~~~~~wSPDG~~I~f~s~~~g---~~~Iy 314 (429)
T PRK03629 247 -APAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDG---RSN--NTEPTWFPDSQNLAYTSDQAG---RPQVY 314 (429)
T ss_pred -CeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCC---CCC--cCceEECCCCCEEEEEeCCCC---CceEE
Confidence 1122234554554432221 23699999998887776542 111 1111222 444 444332221 25799
Q ss_pred EEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCccc
Q 009910 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 393 (522)
Q Consensus 329 ~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w~~ 393 (522)
.+|+.+..-+.+.... . ......+..++ ..|+..+...+ ...++++|+++.++..
T Consensus 315 ~~d~~~g~~~~lt~~~-----~--~~~~~~~SpDG-~~Ia~~~~~~g--~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 315 KVNINGGAPQRITWEG-----S--QNQDADVSSDG-KFMVMVSSNGG--QQHIAKQDLATGGVQV 369 (429)
T ss_pred EEECCCCCeEEeecCC-----C--CccCEEECCCC-CEEEEEEccCC--CceEEEEECCCCCeEE
Confidence 9999887766654211 0 11122333223 34444443322 3468889988776544
No 125
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=74.89 E-value=81 Score=30.20 Aligned_cols=182 Identities=19% Similarity=0.277 Sum_probs=82.5
Q ss_pred CCCceEEeeecCCCCC-------CccceEEEEECCEEEEEcCcCCCCCcccEEEEEcC-------CCcEEEcccccccCC
Q 009910 72 NSENWMVLSIAGDKPI-------PRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD-------RFSWTAASSKLYLSP 137 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~-------~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-------~~~W~~~~~~~~~~~ 137 (522)
....|+.-... ..|. ...-|+.+.+++.-|.+|=..++....++=.+-.. ...=+.++..
T Consensus 113 ~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se----- 186 (367)
T PF12217_consen 113 HDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE----- 186 (367)
T ss_dssp TTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG-----
T ss_pred ccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh-----
Confidence 77789866443 2332 45678888898888888744444333333222111 1122223321
Q ss_pred CCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceE---EEEECCEEEEEc
Q 009910 138 SSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT---VVRASSVLILFG 214 (522)
Q Consensus 138 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~---~~~~~~~iyv~G 214 (522)
-.+...-.++-.+++.||+.--...+...-+.+.+-+.....|+.+. .|... .|+ .+..++.||+||
T Consensus 187 -----y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr----fp~nv-HhtnlPFakvgD~l~mFg 256 (367)
T PF12217_consen 187 -----YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR----FPNNV-HHTNLPFAKVGDVLYMFG 256 (367)
T ss_dssp -----G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT----SS---EEEETTEEEEEE
T ss_pred -----hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc----ccccc-cccCCCceeeCCEEEEEe
Confidence 11122345566779999998544444445566888888888999987 45332 233 346789999998
Q ss_pred ccCCCCC---------c---cCcEEE-------EEcCCCcEEEeec---CCCCCCCCcceEEEEECCc-EEEEEcCCC
Q 009910 215 GEDGKRR---------K---LNDLHM-------FDLKSLTWLPLHC---TGTGPSPRSNHVAALYDDK-NLLIFGGSS 269 (522)
Q Consensus 215 G~~~~~~---------~---~~~v~~-------yd~~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~-~lyv~GG~~ 269 (522)
-....++ + ....+. +.++.-+|..+.. .|..-..-.+...+++.+. ..|+|||.+
T Consensus 257 sERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 257 SERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp E-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 6532111 0 111222 2344556766642 1222233334444555555 457899864
No 126
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=74.03 E-value=64 Score=32.10 Aligned_cols=226 Identities=13% Similarity=0.174 Sum_probs=111.9
Q ss_pred EEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcccCCCCCC
Q 009910 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSD 171 (522)
Q Consensus 93 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~ 171 (522)
-+..+++..+|-|-.+ +.+-++|.++..-... +.+..+..+| .++++++|.|..+
T Consensus 201 YClQYDD~kiVSGlrD-----nTikiWD~n~~~c~~~--------------L~GHtGSVLCLqyd~rviisGSSD----- 256 (499)
T KOG0281|consen 201 YCLQYDDEKIVSGLRD-----NTIKIWDKNSLECLKI--------------LTGHTGSVLCLQYDERVIVSGSSD----- 256 (499)
T ss_pred EEEEecchhhhccccc-----CceEEeccccHHHHHh--------------hhcCCCcEEeeeccceEEEecCCC-----
Confidence 3445566666655432 5666766655332211 1122223333 3477877776543
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~ 247 (522)
.+|-++|..+++ +-....+|+-+++ .+.+.|---. -.++-++|+.+-+ .+...--+-.
T Consensus 257 -sTvrvWDv~tge---------~l~tlihHceaVLhlrf~ng~mvtcSk------DrsiaVWdm~sps--~it~rrVLvG 318 (499)
T KOG0281|consen 257 -STVRVWDVNTGE---------PLNTLIHHCEAVLHLRFSNGYMVTCSK------DRSIAVWDMASPT--DITLRRVLVG 318 (499)
T ss_pred -ceEEEEeccCCc---------hhhHHhhhcceeEEEEEeCCEEEEecC------CceeEEEeccCch--HHHHHHHHhh
Confidence 247778877664 3333456665543 2333332111 1234444443332 1110001111
Q ss_pred CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeE
Q 009910 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAET 327 (522)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v 327 (522)
-|...-.+-+++++|+-..|. ..+-.++..+....+. . ..-+.+-++....++++|-|..+. .|
T Consensus 319 HrAaVNvVdfd~kyIVsASgD------RTikvW~~st~efvRt--l---~gHkRGIAClQYr~rlvVSGSSDn-----tI 382 (499)
T KOG0281|consen 319 HRAAVNVVDFDDKYIVSASGD------RTIKVWSTSTCEFVRT--L---NGHKRGIACLQYRDRLVVSGSSDN-----TI 382 (499)
T ss_pred hhhheeeeccccceEEEecCC------ceEEEEeccceeeehh--h---hcccccceehhccCeEEEecCCCc-----eE
Confidence 232333344677733333221 2466777666554433 2 233455566677999988877554 48
Q ss_pred EEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 328 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 328 ~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
..+|.+.+..-.+-.-... . .-++.++ ++=+|-||+++ .|-++|+.+..
T Consensus 383 Rlwdi~~G~cLRvLeGHEe--L----vRciRFd----~krIVSGaYDG----kikvWdl~aal 431 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEE--L----VRCIRFD----NKRIVSGAYDG----KIKVWDLQAAL 431 (499)
T ss_pred EEEeccccHHHHHHhchHH--h----hhheeec----Cceeeeccccc----eEEEEeccccc
Confidence 8999988775544321111 1 1223333 33467899876 46666666553
No 127
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=73.99 E-value=84 Score=29.96 Aligned_cols=215 Identities=18% Similarity=0.199 Sum_probs=107.2
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE--EECCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV--RASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
+++.+..+|.- .|-.||+.++.=..+.. .-..+..-+++ ..+++-..-||.++. +-++|+.+
T Consensus 51 dk~~LAaa~~q-------hvRlyD~~S~np~Pv~t---~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~ 114 (311)
T KOG0315|consen 51 DKKDLAAAGNQ-------HVRLYDLNSNNPNPVAT---FEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRS 114 (311)
T ss_pred CcchhhhccCC-------eeEEEEccCCCCCceeE---EeccCCceEEEEEeecCeEEEecCCCce------EEEEeccC
Confidence 34455555542 38889988875322221 11122222333 356888888887654 55667665
Q ss_pred CcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCcc-ceEEEEE-CCE
Q 009910 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA-GCCGVLC-GTK 311 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~-~~~~~~~-~~~ 311 (522)
..-.+.- ..+.|. -+.+...+..=++.|-.+ ..|+++|+.++....... |..-. -.++++. +++
T Consensus 115 ~~~qR~~---~~~spV--n~vvlhpnQteLis~dqs-----g~irvWDl~~~~c~~~li----Pe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 115 LSCQRNY---QHNSPV--NTVVLHPNQTELISGDQS-----GNIRVWDLGENSCTHELI----PEDDTSIQSLTVMPDGS 180 (311)
T ss_pred cccchhc---cCCCCc--ceEEecCCcceEEeecCC-----CcEEEEEccCCccccccC----CCCCcceeeEEEcCCCc
Confidence 3322221 222221 234444554334444433 359999999887665533 22222 2233333 455
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCc-eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC-
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGE-WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN- 389 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~- 389 (522)
..+. +.+. ...|++++.+.. =+.+. |.....++.+|..-.+-..+..+| +.-+.+. .|.+++.++-
T Consensus 181 ml~a-~nnk----G~cyvW~l~~~~~~s~l~--P~~k~~ah~~~il~C~lSPd~k~l-at~ssdk----tv~iwn~~~~~ 248 (311)
T KOG0315|consen 181 MLAA-ANNK----GNCYVWRLLNHQTASELE--PVHKFQAHNGHILRCLLSPDVKYL-ATCSSDK----TVKIWNTDDFF 248 (311)
T ss_pred EEEE-ecCC----ccEEEEEccCCCccccce--EhhheecccceEEEEEECCCCcEE-EeecCCc----eEEEEecCCce
Confidence 4443 3332 237777766533 22222 333446667777766655554444 4444332 4555555443
Q ss_pred Cc--------cccccCCCCCCCCceEEeecCC
Q 009910 390 ES--------SMGRRSTPNAKGPGQLLFEKRS 413 (522)
Q Consensus 390 ~w--------~~~~~~~~~~~~~~~~~fgg~~ 413 (522)
+- ...|..+.+ .+++-++.|++.
T Consensus 249 kle~~l~gh~rWvWdc~FS-~dg~YlvTassd 279 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFS-ADGEYLVTASSD 279 (311)
T ss_pred eeEEEeecCCceEEeeeec-cCccEEEecCCC
Confidence 11 112667776 666665655543
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=72.97 E-value=98 Score=30.30 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=68.4
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceE
Q 009910 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (522)
++-.||..++.-... .-....--.++..+..=.+.||.++. +-+||+.+..=..+- .--.+.. +
T Consensus 36 slrlYdv~~~~l~~~-----~~~~~plL~c~F~d~~~~~~G~~dg~------vr~~Dln~~~~~~ig---th~~~i~--c 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK-----FKHGAPLLDCAFADESTIVTGGLDGQ------VRRYDLNTGNEDQIG---THDEGIR--C 99 (323)
T ss_pred cEEEEeccchhhhhh-----eecCCceeeeeccCCceEEEeccCce------EEEEEecCCcceeec---cCCCceE--E
Confidence 477888877732211 11111112334455566667776654 889999988766653 2222211 1
Q ss_pred EEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEEC
Q 009910 254 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 332 (522)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~ 332 (522)
.... ... .+|.||.+.. +-.+|+.... . . +..-.+..-+++-+ .+..+|+|+.+. .+..||+
T Consensus 100 i~~~~~~~-~vIsgsWD~~-----ik~wD~R~~~---~-~-~~~d~~kkVy~~~v-~g~~LvVg~~~r-----~v~iyDL 162 (323)
T KOG1036|consen 100 IEYSYEVG-CVISGSWDKT-----IKFWDPRNKV---V-V-GTFDQGKKVYCMDV-SGNRLVVGTSDR-----KVLIYDL 162 (323)
T ss_pred EEeeccCC-eEEEcccCcc-----EEEEeccccc---c-c-cccccCceEEEEec-cCCEEEEeecCc-----eEEEEEc
Confidence 2222 233 6888988753 7888876511 1 1 11112223334444 445556666553 4899998
Q ss_pred CCCc
Q 009910 333 LKGE 336 (522)
Q Consensus 333 ~~~~ 336 (522)
.+..
T Consensus 163 Rn~~ 166 (323)
T KOG1036|consen 163 RNLD 166 (323)
T ss_pred cccc
Confidence 7643
No 129
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=70.94 E-value=1.4e+02 Score=31.19 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=99.5
Q ss_pred EEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCcee
Q 009910 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 95 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (522)
+.+++.||.+--..+ ...++.-|+..+.-++-.... .--+| -+..+++-+||-- -.+
T Consensus 232 mIV~~RvYFlsD~eG---~GnlYSvdldGkDlrrHTnFt---------dYY~R----~~nsDGkrIvFq~-------~Gd 288 (668)
T COG4946 232 MIVGERVYFLSDHEG---VGNLYSVDLDGKDLRRHTNFT---------DYYPR----NANSDGKRIVFQN-------AGD 288 (668)
T ss_pred eEEcceEEEEecccC---ccceEEeccCCchhhhcCCch---------hcccc----ccCCCCcEEEEec-------CCc
Confidence 456778887754333 456677777765544433310 01111 1122444444411 124
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEE------------EEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC
Q 009910 175 VWTFDTETECWSVVEAKGDIPVARSGHTV------------VRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~------------~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 242 (522)
+|.|||+++.-+++.. .+|..|..-.. +..++..+++= .-...+++++..+--.++.
T Consensus 289 IylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V-------SRGkaFi~~~~~~~~iqv~-- 357 (668)
T COG4946 289 IYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV-------SRGKAFIMRPWDGYSIQVG-- 357 (668)
T ss_pred EEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEE-------ecCcEEEECCCCCeeEEcC--
Confidence 9999999999998876 45554432111 12233333321 1123555554333222232
Q ss_pred CCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (522)
Q Consensus 243 g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~ 322 (522)
....-|+.+ ...++. -.++|-.++ +.+.+||..+..-+++.. +.++.....+.-+++..+++-..
T Consensus 358 -~~~~VrY~r--~~~~~e-~~vigt~dg----D~l~iyd~~~~e~kr~e~----~lg~I~av~vs~dGK~~vvaNdr--- 422 (668)
T COG4946 358 -KKGGVRYRR--IQVDPE-GDVIGTNDG----DKLGIYDKDGGEVKRIEK----DLGNIEAVKVSPDGKKVVVANDR--- 422 (668)
T ss_pred -CCCceEEEE--EccCCc-ceEEeccCC----ceEEEEecCCceEEEeeC----CccceEEEEEcCCCcEEEEEcCc---
Confidence 111122222 222333 355565443 358889988887666643 34444444444466655555322
Q ss_pred CcCeEEEEECCCCceEEec
Q 009910 323 RHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~ 341 (522)
-++|++|+++++-+.+.
T Consensus 423 --~el~vididngnv~~id 439 (668)
T COG4946 423 --FELWVIDIDNGNVRLID 439 (668)
T ss_pred --eEEEEEEecCCCeeEec
Confidence 45899999888876655
No 130
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.91 E-value=1.1e+02 Score=29.82 Aligned_cols=113 Identities=17% Similarity=0.121 Sum_probs=64.0
Q ss_pred ECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-E--ECCEEEEEcccCCCCCccCcEEEEEc
Q 009910 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-R--ASSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~--~~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
-++.+|+.-=. -+-+-+.|+.+..=+.++ .|.+....+-. . --+++++- ..-...+++|||
T Consensus 198 pdGsvwyasla------gnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit------twg~g~l~rfdP 261 (353)
T COG4257 198 PDGSVWYASLA------GNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT------TWGTGSLHRFDP 261 (353)
T ss_pred CCCcEEEEecc------ccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe------ccCCceeeEeCc
Confidence 36777765111 122667788887655554 34332221111 1 13567775 123467999999
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeee
Q 009910 232 KSLTWLPLHCTGTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 292 (522)
.+..|.+-+..+.-+ |-. ...+++ .++.+. .-..+.+.+||+++.+.+.+..
T Consensus 262 s~~sW~eypLPgs~a--rpy--s~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 262 SVTSWIEYPLPGSKA--RPY--SMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ccccceeeeCCCCCC--Ccc--eeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence 999999985433222 222 233333 235542 1224679999999999988843
No 131
>PRK01742 tolB translocation protein TolB; Provisional
Probab=70.38 E-value=1.4e+02 Score=31.05 Aligned_cols=141 Identities=11% Similarity=0.092 Sum_probs=70.3
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
..++.+|+.+++-+.+.. .+.. .......-+++.++++..... ..++|.+|+.+.....+.. ... ....
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~-~~~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~~-~~~~ 296 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH-NGAPAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTS---GAG-NNTE 296 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc-cCceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeecc---CCC-CcCC
Confidence 459999998887666542 2211 111122224544444332111 1358999998887777642 111 1111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEEC-CEEEEEcccCCCCCcCeEEEEE
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyi~GG~~~~~~~~~v~~yd 331 (522)
....-+++.|++.....+ ..++|.++..+..-+.+.. .. . .....-+ ..|++.++ ..++.+|
T Consensus 297 ~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~-----~~-~-~~~~SpDG~~ia~~~~-------~~i~~~D 359 (429)
T PRK01742 297 PSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG-----RG-Y-SAQISADGKTLVMING-------DNVVKQD 359 (429)
T ss_pred EEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC-----CC-C-CccCCCCCCEEEEEcC-------CCEEEEE
Confidence 222234453444332222 2368888876654333311 11 1 1111113 44555443 3488899
Q ss_pred CCCCceEEec
Q 009910 332 ILKGEWSVAI 341 (522)
Q Consensus 332 ~~~~~W~~~~ 341 (522)
+.+.+++.+.
T Consensus 360 l~~g~~~~lt 369 (429)
T PRK01742 360 LTSGSTEVLS 369 (429)
T ss_pred CCCCCeEEec
Confidence 9999887654
No 132
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=70.22 E-value=1.3e+02 Score=30.53 Aligned_cols=259 Identities=10% Similarity=0.066 Sum_probs=126.9
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCC---CCCCceeE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD---SGSDRVSV 175 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~v 175 (522)
..+||.-....... +.+.++|..+.+-...-+. ..+-.+.+...++.||+.-.+.. .+...+.|
T Consensus 13 ~~v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~------------G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 13 RRVYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDG------------GFLPNPVVASDGSFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred CEEEEECCcccccC-ceEEEEECCCCEEEEEEEc------------cCCCceeECCCCCEEEEEeccccccccCCCCCEE
Confidence 34777654322222 8899999988654332221 11111233444678999876432 33456679
Q ss_pred EEEECCCCcEE-EeeecCCCCCCCc-----ceEEE-EEC-CEEEEEcccCCCCCccCcEEEEEcCCCcEEE-eecCC---
Q 009910 176 WTFDTETECWS-VVEAKGDIPVARS-----GHTVV-RAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTG--- 243 (522)
Q Consensus 176 ~~yd~~t~~W~-~~~~~~~~p~~r~-----~~~~~-~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g--- 243 (522)
.+||+.+.+-. +++. .+.+|. .+..+ .-+ ..+|+. +...-+.+-+.|+.+++-.. ++..+
T Consensus 80 ~v~D~~t~~~~~~i~~---p~~p~~~~~~~~~~~~ls~dgk~l~V~-----n~~p~~~V~VvD~~~~kvv~ei~vp~~~~ 151 (352)
T TIGR02658 80 EVIDPQTHLPIADIEL---PEGPRFLVGTYPWMTSLTPDNKTLLFY-----QFSPSPAVGVVDLEGKAFVRMMDVPDCYH 151 (352)
T ss_pred EEEECccCcEEeEEcc---CCCchhhccCccceEEECCCCCEEEEe-----cCCCCCEEEEEECCCCcEEEEEeCCCCcE
Confidence 99999998754 3332 122231 11222 223 467775 11235678889988876544 22110
Q ss_pred CCCCCCcceEEEEECCcEEE---------------EEcC------CCC------C-----CCCCcEEEEEcCC------C
Q 009910 244 TGPSPRSNHVAALYDDKNLL---------------IFGG------SSK------S-----KTLNDLYSLDFET------M 285 (522)
Q Consensus 244 ~~p~~r~~~~~~~~~~~~ly---------------v~GG------~~~------~-----~~~~~v~~yd~~~------~ 285 (522)
-.|.+...+.+...+++.+. +|-+ ... . .+-+.++..|+.. .
T Consensus 152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLP 231 (352)
T ss_pred EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecc
Confidence 01111222222223333222 2222 000 0 1125567777422 2
Q ss_pred cEEEeeeCCC----CCCCccceEEEEE--CCEEEEEc--cc--CCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcE
Q 009910 286 IWTRIKIRGF----HPSPRAGCCGVLC--GTKWYIAG--GG--SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 355 (522)
Q Consensus 286 ~W~~~~~~~~----~p~~r~~~~~~~~--~~~iyi~G--G~--~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~ 355 (522)
.|..+..... .|.... .++.. ++++||.. +. +.....++++++|+.+.+ .+...+ ..+.-++
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q--~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--vi~~i~----vG~~~~~ 303 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQ--QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--RLRKIE----LGHEIDS 303 (352)
T ss_pred eeeeccccccccccCCCcce--eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--EEEEEe----CCCceee
Confidence 3555433211 111111 13332 67899842 22 123345789999987755 444322 2233334
Q ss_pred EEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 356 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 356 ~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
++ +..+++..+|+.=+. .++|.++|..+.+-
T Consensus 304 ia-vS~Dgkp~lyvtn~~----s~~VsViD~~t~k~ 334 (352)
T TIGR02658 304 IN-VSQDAKPLLYALSTG----DKTLYIFDAETGKE 334 (352)
T ss_pred EE-ECCCCCeEEEEeCCC----CCcEEEEECcCCeE
Confidence 44 333344477766553 34699999888763
No 133
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=69.47 E-value=1.2e+02 Score=29.98 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=72.7
Q ss_pred CEEEEEcccC-CCCC--cc-CcEEEEEcCCC-----cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEE
Q 009910 208 SVLILFGGED-GKRR--KL-NDLHMFDLKSL-----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 278 (522)
Q Consensus 208 ~~iyv~GG~~-~~~~--~~-~~v~~yd~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~ 278 (522)
...+++|-.- .... .. ..+..|+.... ++..+. .....-.-.+.+.+++. +++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~-lv~~~g-------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGR-LVVAVG-------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTE-EEEEET-------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCE-EEEeec-------CEEE
Confidence 4677777542 1111 22 56899999884 555554 22222234566777777 555444 3688
Q ss_pred EEEcCCCc-EEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEE
Q 009910 279 SLDFETMI-WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (522)
Q Consensus 279 ~yd~~~~~-W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~ 357 (522)
.|++.... +...... ..+-...+....++.|++ |-.... -.++.|+.+..+-..++... .++...++.
T Consensus 111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~v-gD~~~s---v~~~~~~~~~~~l~~va~d~----~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFY---DSPFYITSLSVFKNYILV-GDAMKS---VSLLRYDEENNKLILVARDY----QPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEEEE----BSSSEEEEEEETTEEEE-EESSSS---EEEEEEETTTE-EEEEEEES----S-BEEEEEE
T ss_pred EEEccCcccchhhhee---cceEEEEEEeccccEEEE-EEcccC---EEEEEEEccCCEEEEEEecC----CCccEEEEE
Confidence 99988887 8888775 333344555666786654 432221 23567788666677777533 234344444
Q ss_pred EE
Q 009910 358 LV 359 (522)
Q Consensus 358 ~~ 359 (522)
.+
T Consensus 180 ~l 181 (321)
T PF03178_consen 180 FL 181 (321)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=69.38 E-value=1.4e+02 Score=30.88 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=21.6
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 307 ~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
..++.+.+.|+.+++ +.++|+.+.+--+
T Consensus 286 s~DgtlLlSGd~dg~-----VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGK-----VCVWDIYSKQCIR 313 (476)
T ss_pred ecCccEEEeeCCCCC-----EEEEecchHHHHH
Confidence 348999999998876 8888888766443
No 135
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=69.06 E-value=1.1e+02 Score=29.15 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=75.5
Q ss_pred CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEE
Q 009910 124 FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTV 203 (522)
Q Consensus 124 ~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~ 203 (522)
..|+...++.... .+.|......+..-.+.|+..||-. .+|..|+++++-+..- --..-+-|++
T Consensus 99 ~lwe~~~P~~~~~-----~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtDYvH~v 162 (325)
T KOG0649|consen 99 RLWEVKIPMQVDA-----VEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTDYVHSV 162 (325)
T ss_pred hhhhhcCccccCc-----ccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcceeeee
Confidence 3577776654311 1222222223333468899998753 3899999999987654 2234456776
Q ss_pred EEEC-CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCC---CCCCCCcce--EEEEECCcEEEEEcCCCCCCCCCcE
Q 009910 204 VRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG---TGPSPRSNH--VAALYDDKNLLIFGGSSKSKTLNDL 277 (522)
Q Consensus 204 ~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g---~~p~~r~~~--~~~~~~~~~lyv~GG~~~~~~~~~v 277 (522)
+.-+ +.=++-|+.++. +-++|.++.+=.++-..- ++..|-.+. .+...+.. .+|.||-. .+
T Consensus 163 v~R~~~~qilsG~EDGt------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp------~l 229 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGT------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP------KL 229 (325)
T ss_pred eecccCcceeecCCCcc------EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC------ce
Confidence 6532 334555666544 667888887755542111 111111222 34445555 67777642 34
Q ss_pred EEEEcCCCcEEEee
Q 009910 278 YSLDFETMIWTRIK 291 (522)
Q Consensus 278 ~~yd~~~~~W~~~~ 291 (522)
-.+++...+-+.+-
T Consensus 230 slwhLrsse~t~vf 243 (325)
T KOG0649|consen 230 SLWHLRSSESTCVF 243 (325)
T ss_pred eEEeccCCCceEEE
Confidence 55666555555543
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=68.70 E-value=88 Score=32.71 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=56.0
Q ss_pred EEEEEcCCC----cEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCC
Q 009910 277 LYSLDFETM----IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNK 352 (522)
Q Consensus 277 v~~yd~~~~----~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~ 352 (522)
|..||.... .|.... ..|..+-+.+..+..|++-=|.+.. |+.||.....-+.... .-.
T Consensus 189 VtlwDv~g~sp~~~~~~~H-----sAP~~gicfspsne~l~vsVG~Dkk-----i~~yD~~s~~s~~~l~-------y~~ 251 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAH-----SAPCRGICFSPSNEALLVSVGYDKK-----INIYDIRSQASTDRLT-------YSH 251 (673)
T ss_pred EEEEeccCCCcccchhhhc-----cCCcCcceecCCccceEEEecccce-----EEEeecccccccceee-------ecC
Confidence 667776543 344443 2344555666668888888887755 9999988655433221 112
Q ss_pred CcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 353 GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 353 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
-++.+++. +.+.++++|-..+ .++.||+...+
T Consensus 252 Plstvaf~--~~G~~L~aG~s~G----~~i~YD~R~~k 283 (673)
T KOG4378|consen 252 PLSTVAFS--ECGTYLCAGNSKG----ELIAYDMRSTK 283 (673)
T ss_pred Ccceeeec--CCceEEEeecCCc----eEEEEecccCC
Confidence 24555555 4566777777654 58899987765
No 137
>PRK10115 protease 2; Provisional
Probab=68.25 E-value=2e+02 Score=32.09 Aligned_cols=210 Identities=8% Similarity=-0.015 Sum_probs=99.1
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CC-EEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v 175 (522)
+++.++++-........++++.|+.+... ++ ..++... ..++.. ++ .||+. ..........++
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~-----------~~i~~~~-~~~~w~~D~~~~~y~-~~~~~~~~~~~v 201 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YP-----------ELLDNVE-PSFVWANDSWTFYYV-RKHPVTLLPYQV 201 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCC--CC-----------ccccCcc-eEEEEeeCCCEEEEE-EecCCCCCCCEE
Confidence 45566665333333345677777765521 11 1122222 223333 33 44443 332211234689
Q ss_pred EEEECCCCc--EEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEc--CCCcEEEeecCCCCCCCCc
Q 009910 176 WTFDTETEC--WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDL--KSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 176 ~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~g~~p~~r~ 250 (522)
|++++.|.. =..+-. -+........... +++..++..... ..+.++.|+. .+..|..+. ..+...
T Consensus 202 ~~h~lgt~~~~d~lv~~---e~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~~~~~~~~~~~~~---~~~~~~- 271 (686)
T PRK10115 202 WRHTIGTPASQDELVYE---EKDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLDAELADAEPFVFL---PRRKDH- 271 (686)
T ss_pred EEEECCCChhHCeEEEe---eCCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEECcCCCCCceEEE---ECCCCC-
Confidence 999999883 233322 1112222222233 444334443332 2467888884 234443332 122211
Q ss_pred ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEE
Q 009910 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~ 329 (522)
..... ..+..+|+.--.+ .....+...++. ...|+.+... ...+.--.....++.|++..-..+ ...+++
T Consensus 272 ~~~~~-~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~ 342 (686)
T PRK10115 272 EYSLD-HYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFTDWLVVEERQRG---LTSLRQ 342 (686)
T ss_pred EEEEE-eCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEECC---CCCCEEEEEEEECCEEEEEEEeCC---EEEEEE
Confidence 12222 3334477764322 223457777876 5789888643 112222233445777777654332 345888
Q ss_pred EECCCCceEEec
Q 009910 330 FDILKGEWSVAI 341 (522)
Q Consensus 330 yd~~~~~W~~~~ 341 (522)
+|+.+.....+.
T Consensus 343 ~~~~~~~~~~l~ 354 (686)
T PRK10115 343 INRKTREVIGIA 354 (686)
T ss_pred EcCCCCceEEec
Confidence 887665555443
No 138
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=67.89 E-value=1.1e+02 Score=31.38 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=47.7
Q ss_pred eEEEEECCEEEE---EcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcE
Q 009910 150 HSLISWGKKVLL---VGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (522)
Q Consensus 150 ~~~~~~~~~iyv---~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 226 (522)
+++..+++.+=+ +|-+...+...+++|++|-.-+---++.- -.|..|. .++-..++.+|++-= +.++-+
T Consensus 380 f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltG--l~~gERI-YAvRf~gdv~yiVTf-----rqtDPl 451 (603)
T COG4880 380 FDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTG--LAPGERI-YAVRFVGDVLYIVTF-----RQTDPL 451 (603)
T ss_pred ccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEec--cCCCceE-EEEEEeCceEEEEEE-----eccCce
Confidence 344444554433 34444456677899999988776666652 2344454 466677888888732 235568
Q ss_pred EEEEcCCCc
Q 009910 227 HMFDLKSLT 235 (522)
Q Consensus 227 ~~yd~~t~~ 235 (522)
++.|+++-+
T Consensus 452 fviDlsNPe 460 (603)
T COG4880 452 FVIDLSNPE 460 (603)
T ss_pred EEEEcCCCC
Confidence 888886543
No 139
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=66.16 E-value=1.5e+02 Score=29.77 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=39.6
Q ss_pred CCEEEEEccc----CCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEE-cCCCCCCCCcEEE
Q 009910 309 GTKWYIAGGG----SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF-GGIKKEPSNQVEV 383 (522)
Q Consensus 309 ~~~iyi~GG~----~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~-GG~~~~~~~~v~~ 383 (522)
.++||++-=. +.+....+||+||+++.+=..-. +... ..-+ +.+.-+++..||.+ ++. ..+.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri--~l~~----~~~S-i~Vsqd~~P~L~~~~~~~-----~~l~v 316 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI--PLEH----PIDS-IAVSQDDKPLLYALSAGD-----GTLDV 316 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE--EEEE----EESE-EEEESSSS-EEEEEETTT-----TEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE--eCCC----ccce-EEEccCCCcEEEEEcCCC-----CeEEE
Confidence 6799986521 12335578999999997633222 2111 1113 33443566778765 333 26999
Q ss_pred EEcccCCcc
Q 009910 384 LSIEKNESS 392 (522)
Q Consensus 384 y~~~~~~w~ 392 (522)
||..+.+-.
T Consensus 317 ~D~~tGk~~ 325 (342)
T PF06433_consen 317 YDAATGKLV 325 (342)
T ss_dssp EETTT--EE
T ss_pred EeCcCCcEE
Confidence 999988643
No 140
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=65.91 E-value=1.3e+02 Score=28.89 Aligned_cols=269 Identities=17% Similarity=0.199 Sum_probs=110.7
Q ss_pred EEEECCEEE--EEcCcC-CCCCcccEEEEEcC-CCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccc-CCC
Q 009910 94 AAVIGNKMI--VVGGES-GNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGK-TDS 168 (522)
Q Consensus 94 ~~~~~~~iy--v~GG~~-~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~-~~~ 168 (522)
+.++++.|| .++|.. +-..+.-.|+=+.+ .++|+.-.-....-|. .+.-.-...++-+++++||++=-. +-.
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~---yptvnyHCmSMGv~~NRLfa~iEtR~~a 97 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPD---YPTVNYHCMSMGVVGNRLFAVIETRTVA 97 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TT---TTTEEEE-B-EEEETTEEEEEEEEEETT
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCC---CCccceeeeeeeeecceeeEEEeehhhh
Confidence 455677766 234432 11112223444443 4688776543221111 111122345677889999876322 222
Q ss_pred CCCceeEEEEE---CCCCcEEEeeecCCCCC-------CCcceEEEEECCEEEEEcccCCCCCccCcEEE-EEcCC----
Q 009910 169 GSDRVSVWTFD---TETECWSVVEAKGDIPV-------ARSGHTVVRASSVLILFGGEDGKRRKLNDLHM-FDLKS---- 233 (522)
Q Consensus 169 ~~~~~~v~~yd---~~t~~W~~~~~~~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~-yd~~t---- 233 (522)
...+...+.|| ...+.|+..... ..|. .-.-|+.+.+++.-|.+|=.+++ .....+-. |-+..
T Consensus 98 ~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD-~sPRe~G~~yfs~~~~sp 175 (367)
T PF12217_consen 98 SNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD-VSPRELGFLYFSDAFASP 175 (367)
T ss_dssp T--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-S-SSS-EEEEEEETTTTT-T
T ss_pred hhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCC-CCcceeeEEEecccccCC
Confidence 22333444444 567889865532 1333 34557778888877888754443 22233322 22211
Q ss_pred CcE--EEeecCCCCCCCCcceEEEEECCcEEEEE-cCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECC
Q 009910 234 LTW--LPLHCTGTGPSPRSNHVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310 (522)
Q Consensus 234 ~~W--~~~~~~g~~p~~r~~~~~~~~~~~~lyv~-GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 310 (522)
... ..++. .....-...+.-.+++. +|+. -|......-..+.+-+.....|+.+.... ..-....--+.+++
T Consensus 176 ~~~vrr~i~s--ey~~~AsEPCvkyY~g~-LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~--nvHhtnlPFakvgD 250 (367)
T PF12217_consen 176 GVFVRRIIPS--EYERNASEPCVKYYDGV-LYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPN--NVHHTNLPFAKVGD 250 (367)
T ss_dssp T--EEEE--G--GG-TTEEEEEEEEETTE-EEEEEEES-TTS---EEEEESSTTSS-EEEE-TT-----SS---EEEETT
T ss_pred cceeeeechh--hhccccccchhhhhCCE-EEEEEcCcCCCCCcceeeeecccCCchhhccccc--cccccCCCceeeCC
Confidence 011 11210 12222233344456777 6665 35544444556778888888999887631 11122223466799
Q ss_pred EEEEEcccCC----------CC---CcCeEEEE-------ECCCCceEEeccC--CCCCCCCCCCcEEEEEeeCCccEEE
Q 009910 311 KWYIAGGGSR----------KK---RHAETLIF-------DILKGEWSVAITS--PSSSVTSNKGFTLVLVQHKEKDFLV 368 (522)
Q Consensus 311 ~iyi~GG~~~----------~~---~~~~v~~y-------d~~~~~W~~~~~~--p~~~~~~r~~~~~~~~~~~~~~~l~ 368 (522)
.||+||-... +. ....++.. .++.-+|..+... .........|.+.+++. +.---|
T Consensus 251 ~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~K--D~~lyy 328 (367)
T PF12217_consen 251 VLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVK--DGWLYY 328 (367)
T ss_dssp EEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEE--TTEEEE
T ss_pred EEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEE--CCEEEE
Confidence 9999995321 11 12223322 3344566665431 11222333455556665 445557
Q ss_pred EEcCCC
Q 009910 369 AFGGIK 374 (522)
Q Consensus 369 v~GG~~ 374 (522)
+|||.+
T Consensus 329 ~FGgED 334 (367)
T PF12217_consen 329 IFGGED 334 (367)
T ss_dssp EEEEB-
T ss_pred EecCcc
Confidence 899964
No 141
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=65.26 E-value=1.7e+02 Score=29.95 Aligned_cols=99 Identities=9% Similarity=0.040 Sum_probs=54.0
Q ss_pred CCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC--CCCCCCC--cceEEEEE
Q 009910 182 TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTGPSPR--SNHVAALY 257 (522)
Q Consensus 182 t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~p~~r--~~~~~~~~ 257 (522)
.+.|+.+. ....+ .--++.++|++|++. ....++.++.+- +-+++.+. +.+...+ ...-.+..
T Consensus 189 ~~~Wt~l~----~~~~~-~~DIi~~kGkfYAvD-------~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALK----QMGYH-FSDIIVHKGQTYALD-------SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEcc----CCCce-eeEEEEECCEEEEEc-------CCCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE
Confidence 38999885 23333 345778899999982 234577776431 11222110 0111111 12234556
Q ss_pred CCcEEEEEcCCCCC--------------CCCCcEEEEEcCCCcEEEeeeCC
Q 009910 258 DDKNLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRG 294 (522)
Q Consensus 258 ~~~~lyv~GG~~~~--------------~~~~~v~~yd~~~~~W~~~~~~~ 294 (522)
.|+ ++++...... ...-.|+.+|.+...|.++..++
T Consensus 256 ~Gd-LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 256 CGE-LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CCE-EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 676 7776653211 01125677788899999998864
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=64.64 E-value=2.2e+02 Score=31.05 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=78.3
Q ss_pred ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEE--ECCcEEEEEcCCCCCCCCCcEEEEEcC
Q 009910 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFE 283 (522)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~ 283 (522)
-++.++++|- ..++.+|.+.-.--.++.....+|..+...++.. .++..+++.- ....+++.++.+
T Consensus 392 Pdg~~Ia~st-------~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~ 459 (691)
T KOG2048|consen 392 PDGNLIAIST-------VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELE 459 (691)
T ss_pred CCCCEEEEee-------ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-----cccceeEEEEec
Confidence 3566777753 2333444333321122221226777775555543 3333355543 223468888888
Q ss_pred CCcEEEeeeCCCCCCCccc--eEEEE--ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEE
Q 009910 284 TMIWTRIKIRGFHPSPRAG--CCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLV 359 (522)
Q Consensus 284 ~~~W~~~~~~~~~p~~r~~--~~~~~--~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~ 359 (522)
+.+-+++...- |.+... ..++. .|+.|.++++. ..|++|++++.+-..+... .+....++..
T Consensus 460 ~ps~kel~~~~--~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~~r------ln~~vTa~~~ 525 (691)
T KOG2048|consen 460 TPSFKELKSIQ--SQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLKVR------LNIDVTAAAF 525 (691)
T ss_pred Ccchhhhhccc--cccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecchhc------cCcceeeeec
Confidence 88777776532 221111 11222 36677777743 3499999999887766521 1122233333
Q ss_pred eeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 360 QHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 360 ~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
.+...+.|+|. ...|+|+.||++.
T Consensus 526 ~~~~~~~lvva-----ts~nQv~efdi~~ 549 (691)
T KOG2048|consen 526 SPFVRNRLVVA-----TSNNQVFEFDIEA 549 (691)
T ss_pred cccccCcEEEE-----ecCCeEEEEecch
Confidence 32233444432 2356899999954
No 143
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=62.04 E-value=1.5e+02 Score=28.26 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=74.2
Q ss_pred CcEEEeeec--CCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECC
Q 009910 183 ECWSVVEAK--GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (522)
Q Consensus 183 ~~W~~~~~~--~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 259 (522)
..|+...|. +..+.|-....... -.|.|+..||- ..++..|+++.+.+..- .-..-+-|+.+.-+.
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE----cCCcceeeeeeeccc
Confidence 347766542 22344444433332 35788888863 34889999999988763 223345566554222
Q ss_pred cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCC-CCc--cc--eEEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 260 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-SPR--AG--CCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 260 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p-~~r--~~--~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
.-=++-|+.++ .+-++|.++.+-..+-..-..| .-| .+ -.+...+....+.||.-. +-.+++.+
T Consensus 168 ~~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrs 236 (325)
T KOG0649|consen 168 NGQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRS 236 (325)
T ss_pred CcceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccC
Confidence 21244565544 4778888776655443211111 112 22 244555777888887532 44566666
Q ss_pred CceEEec
Q 009910 335 GEWSVAI 341 (522)
Q Consensus 335 ~~W~~~~ 341 (522)
.+-+.+-
T Consensus 237 se~t~vf 243 (325)
T KOG0649|consen 237 SESTCVF 243 (325)
T ss_pred CCceEEE
Confidence 5555544
No 144
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=61.98 E-value=3.3e+02 Score=32.26 Aligned_cols=218 Identities=13% Similarity=0.051 Sum_probs=108.4
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCC---CCCCCC-CCCccceEEEEE--CCEEEEEc
Q 009910 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSP---SSLPLK-IPACRGHSLISW--GKKVLLVG 163 (522)
Q Consensus 92 ~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~---~~~~~~-~~~r~~~~~~~~--~~~iyv~G 163 (522)
+++++. ++.|||.-... +.+.++|+.++.=+.+...+.... ...... ..-..-+.++.. ++.|||..
T Consensus 627 ~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 444443 45688864322 467888888776555533211000 000000 000011233333 67888874
Q ss_pred ccCCCCCCceeEEEEECCCCcEEEeeecCCC-------C---CCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEc
Q 009910 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDI-------P---VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 164 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-------p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
.. .+.+++||+.++....+...+.. + ....-+.+++. ++.||+.-.. .+.+.+||+
T Consensus 702 ~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~ 769 (1057)
T PLN02919 702 AG------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDL 769 (1057)
T ss_pred CC------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEEC
Confidence 32 23499999988766554322110 0 00111223332 3468887432 356999999
Q ss_pred CCCcEEEeecCCC-CCC--------------CC--cceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCC
Q 009910 232 KSLTWLPLHCTGT-GPS--------------PR--SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG 294 (522)
Q Consensus 232 ~t~~W~~~~~~g~-~p~--------------~r--~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 294 (522)
.+...+.+..... .+. .. .-.++++..+..+||.-.. .+.|.+||++++....+...+
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-----N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-----NHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----CCEEEEEECCCCeEEEEeccC
Confidence 8765433210000 000 00 0113333333348887543 346999999988877766443
Q ss_pred CC-------CCCc--cceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 295 FH-------PSPR--AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 295 ~~-------p~~r--~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
.. .... .-+++++. ++++||....+ +.|.++|+.+.+
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 21 0011 11222332 67899986544 358899988765
No 145
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=61.48 E-value=2e+02 Score=29.65 Aligned_cols=93 Identities=10% Similarity=0.139 Sum_probs=49.3
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCc-EEEeeecCCCCCCCcceEEEEEC--CEEEEEcccCCCCCccCcEEEEEcC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
+|-.|+.-+.++ .+|..+|+...+ ...+. ++... .-....++ +...+++|.+ -.++.|+-.
T Consensus 399 ENGY~Lat~add-----~~V~lwDLRKl~n~kt~~----l~~~~-~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~ 462 (506)
T KOG0289|consen 399 ENGYWLATAADD-----GSVKLWDLRKLKNFKTIQ----LDEKK-EVNSLSFDQSGTYLGIAGSD------LQVYICKKK 462 (506)
T ss_pred cCceEEEEEecC-----CeEEEEEehhhcccceee----ccccc-cceeEEEcCCCCeEEeecce------eEEEEEecc
Confidence 444455444432 138888887655 22222 23222 22333333 6677777543 347888888
Q ss_pred CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcC
Q 009910 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 267 (522)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG 267 (522)
+..|+++. ..+.--.-...+.++....|++-|
T Consensus 463 ~k~W~~~~---~~~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 463 TKSWTEIK---ELADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred cccceeee---hhhhcccccceeeecccceEEeec
Confidence 99999997 333222233445555544455433
No 146
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.45 E-value=1.9e+02 Score=29.31 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=93.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCC--CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 175 (522)
+++||+-.. .. .+++||..+ ..|...... . .+.....+..++.+|+.- ....+
T Consensus 111 ~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~-----------~-~~~~~~~v~~~~~v~~~s-------~~g~~ 165 (370)
T COG1520 111 DGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGG-----------S-PYYASPPVVGDGTVYVGT-------DDGHL 165 (370)
T ss_pred CCeEEEecc-cc-----eEEEEECCCCcEEEEEecCC-----------C-eEEecCcEEcCcEEEEec-------CCCeE
Confidence 577666433 22 689999953 478777652 1 122233444456666542 22348
Q ss_pred EEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCC--cEEEeecCCCCCCCCcc
Q 009910 176 WTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 176 ~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~ 251 (522)
+.+|..+.+ |+.-...+ . ..+.....+..++.+|+- ..+ ....++.+|+++. .|+.-. ..+..+..
T Consensus 166 ~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy~~-~~~----~~~~~~a~~~~~G~~~w~~~~---~~~~~~~~ 235 (370)
T COG1520 166 YALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVYVG-SDG----YDGILYALNAEDGTLKWSQKV---SQTIGRTA 235 (370)
T ss_pred EEEEccCCcEEEEEecCCc-c-ccccccCceeecceEEEe-cCC----CcceEEEEEccCCcEeeeeee---ecccCccc
Confidence 888888654 87544311 1 223333333455666664 221 1126899999765 487532 11111110
Q ss_pred e-EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC--CcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEE
Q 009910 252 H-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETL 328 (522)
Q Consensus 252 ~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~ 328 (522)
- ....+....||+-|+.-.......++++|..+ ..|+.-........+........-++++|+............++
T Consensus 236 ~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~ 315 (370)
T COG1520 236 ISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLY 315 (370)
T ss_pred ccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceE
Confidence 0 01122222244433311111123478887754 45776543100011112122222367777765433322345577
Q ss_pred EEEC
Q 009910 329 IFDI 332 (522)
Q Consensus 329 ~yd~ 332 (522)
+++.
T Consensus 316 ~~~~ 319 (370)
T COG1520 316 ALAD 319 (370)
T ss_pred EEec
Confidence 7775
No 147
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=60.25 E-value=2e+02 Score=29.18 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=66.4
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEccc---CCCCCccCcEEEEEcCC
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE---DGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~v~~yd~~t 233 (522)
..+||.-..... ..+.+.++|..+.+-...-+.+..| | +.+..-+..||+.-.+ ...+...+.+.+||+.+
T Consensus 13 ~~v~V~d~~~~~--~~~~v~ViD~~~~~v~g~i~~G~~P--~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 13 RRVYVLDPGHFA--ATTQVYTIDGEAGRVLGMTDGGFLP--N--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CEEEEECCcccc--cCceEEEEECCCCEEEEEEEccCCC--c--eeECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 457776443211 1267999999887654433323222 2 2233345689998663 22234567899999999
Q ss_pred CcEEEeecCCCCCCCCc-----c-eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE
Q 009910 234 LTWLPLHCTGTGPSPRS-----N-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~-----~-~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (522)
.+=..--.. .+.||+ - ..+..-+++.+||.- ...-+.+-+.|+++++-..
T Consensus 87 ~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 87 HLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEE
Confidence 875532211 122331 1 223334566677752 1224568888877765443
No 148
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=57.99 E-value=2.2e+02 Score=29.02 Aligned_cols=247 Identities=16% Similarity=0.147 Sum_probs=112.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEE-EcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWT-AASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v 175 (522)
+..+||.+. + ..+-++|+.+.+=. ++.. ......++ .-+++.++.+.+. .+++
T Consensus 48 gr~~yv~~r-d-----g~vsviD~~~~~~v~~i~~--------------G~~~~~i~~s~DG~~~~v~n~~-----~~~v 102 (369)
T PF02239_consen 48 GRYLYVANR-D-----GTVSVIDLATGKVVATIKV--------------GGNPRGIAVSPDGKYVYVANYE-----PGTV 102 (369)
T ss_dssp SSEEEEEET-T-----SEEEEEETTSSSEEEEEE---------------SSEEEEEEE--TTTEEEEEEEE-----TTEE
T ss_pred CCEEEEEcC-C-----CeEEEEECCcccEEEEEec--------------CCCcceEEEcCCCCEEEEEecC-----CCce
Confidence 456999853 2 46889999988632 2222 11112222 2344433333332 2358
Q ss_pred EEEECCCCcEEEeeecCCC----CCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 176 WTFDTETECWSVVEAKGDI----PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
..+|.++.+=.+.-+.+.+ +.+|...-.....+..|++-= .-...+|+.|....+=.... .....+.-
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l-----kd~~~I~vVdy~d~~~~~~~---~i~~g~~~ 174 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL-----KDTGEIWVVDYSDPKNLKVT---TIKVGRFP 174 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-----TTTTEEEEEETTTSSCEEEE---EEE--TTE
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE-----ccCCeEEEEEecccccccee---eecccccc
Confidence 8999988763332222212 334443333333455455522 12457888887654322222 23345556
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEEC-CEEEEEcccCCCCCcCeEEEE
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyi~GG~~~~~~~~~v~~y 330 (522)
|-+..-.+++.|+.+ ... .+.+-..|.+++.-..+...+..|.+..+..+.-.+ +.++..+|..... -...--
T Consensus 175 ~D~~~dpdgry~~va-~~~---sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~--~~~ig~ 248 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVA-ANG---SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA--IPLIGT 248 (369)
T ss_dssp EEEEE-TTSSEEEEE-EGG---GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE--EEEEE-
T ss_pred cccccCcccceeeec-ccc---cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee--cccccC
Confidence 666555554333333 222 357889999887666554445445444443333222 3455555432210 011222
Q ss_pred EC----CCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 331 DI----LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 331 d~----~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
|+ ....|+.+...+.. ..+ ..+..+.+..++++-=-.+ ...+.|.++|.++.+
T Consensus 249 ~~v~v~d~~~wkvv~~I~~~----G~g--lFi~thP~s~~vwvd~~~~-~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 249 DPVSVHDDYAWKVVKTIPTQ----GGG--LFIKTHPDSRYVWVDTFLN-PDADTVQVIDKKTLK 305 (369)
T ss_dssp -TTT-STTTBTSEEEEEE-S----SSS----EE--TT-SEEEEE-TT--SSHT-EEEEECCGTE
T ss_pred CccccchhhcCeEEEEEECC----CCc--ceeecCCCCccEEeeccCC-CCCceEEEEECcCcc
Confidence 33 23668887765432 222 3333345667777641111 115689999988864
No 149
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=57.64 E-value=2e+02 Score=28.40 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=104.6
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcC-CCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 175 (522)
++.||+.+. . .+.+..|+.. +.+++..... +.+..-.|.+..- ++.+|+.. +. .+.+
T Consensus 46 ~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~----------~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v 104 (330)
T PRK11028 46 KRHLYVGVR-P----EFRVLSYRIADDGALTFAAES----------PLPGSPTHISTDHQGRFLFSAS-YN-----ANCV 104 (330)
T ss_pred CCEEEEEEC-C----CCcEEEEEECCCCceEEeeee----------cCCCCceEEEECCCCCEEEEEE-cC-----CCeE
Confidence 345777543 2 2567778776 3456544431 1111111222222 34566653 21 1346
Q ss_pred EEEECCCCc--EEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCCccCcEEEEEcCCCc-EEEee-cCCCCCCCC
Q 009910 176 WTFDTETEC--WSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLH-CTGTGPSPR 249 (522)
Q Consensus 176 ~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~-~~g~~p~~r 249 (522)
..|++.++. .+.+.. .+.....|.++.. + +.+|+.. . ..+.+.+||+.+.. ..... .....+...
T Consensus 105 ~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~-~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~ 175 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPC-L-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGA 175 (330)
T ss_pred EEEEECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEee-C-----CCCEEEEEEECCCCcccccCCCceecCCCC
Confidence 677765321 122221 2222233554443 3 3666643 1 23568999987632 21100 000111111
Q ss_pred -cceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC--CCcEEEeeeCCCCC----CCccceEEEEE-C-CEEEEEcccCC
Q 009910 250 -SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFHP----SPRAGCCGVLC-G-TKWYIAGGGSR 320 (522)
Q Consensus 250 -~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~p----~~r~~~~~~~~-~-~~iyi~GG~~~ 320 (522)
-.+.+..-+++.+|+.-.. .+.+.+|+.+ +++.+.+......| .+|.....+.. + ..+|+....
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-- 248 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-- 248 (330)
T ss_pred CCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--
Confidence 1122333345567776322 3567777775 44554443322112 23332222222 3 456765221
Q ss_pred CCCcCeEEEEEC--CCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 321 KKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 321 ~~~~~~v~~yd~--~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
.+.+.+|+. ....++.+...+.. ..++ ...+.. +..+||+.... .+.|.+|+++
T Consensus 249 ---~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~----~~~~~~-dg~~l~va~~~----~~~v~v~~~~ 304 (330)
T PRK11028 249 ---ASLISVFSVSEDGSVLSFEGHQPTE-TQPR----GFNIDH-SGKYLIAAGQK----SHHISVYEID 304 (330)
T ss_pred ---CCeEEEEEEeCCCCeEEEeEEEecc-ccCC----ceEECC-CCCEEEEEEcc----CCcEEEEEEc
Confidence 234656665 44455554432221 1122 123332 34567765432 3467777664
No 150
>PTZ00420 coronin; Provisional
Probab=57.07 E-value=2.9e+02 Score=30.08 Aligned_cols=153 Identities=13% Similarity=0.078 Sum_probs=71.8
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEE-EeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
..+++.||.+. .+..+|+.+.+=. .+. .+ ..-.++.. .++.+++.++.+ ..+.+||+.+.
T Consensus 138 ~~iLaSgS~Dg------tIrIWDl~tg~~~~~i~----~~--~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg 199 (568)
T PTZ00420 138 YYIMCSSGFDS------FVNIWDIENEKRAFQIN----MP--KKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQ 199 (568)
T ss_pred CeEEEEEeCCC------eEEEEECCCCcEEEEEe----cC--CcEEEEEECCCCCEEEEEecC------CEEEEEECCCC
Confidence 34556666542 4778898876521 111 11 11222222 357777776643 34889999875
Q ss_pred cEEEeecCCCCCCCCcceEEEE-----ECCcEEEEEcCCCCCCCCCcEEEEEcCCC-cEEEeeeCCCCCCCccceEEEEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAAL-----YDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC 308 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~-----~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~p~~r~~~~~~~~ 308 (522)
+=...- ..........++. -++. .++.+|.+.. ....+.+||+.+. .-...... .. ..+......
T Consensus 200 ~~i~tl---~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~l---d~-~~~~L~p~~ 270 (568)
T PTZ00420 200 EIASSF---HIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKN-NMREMKLWDLKNTTSALVTMSI---DN-ASAPLIPHY 270 (568)
T ss_pred cEEEEE---ecccCCceeEEEEeeeEcCCCC-EEEEEEcCCC-CccEEEEEECCCCCCceEEEEe---cC-CccceEEee
Confidence 422110 1111110111111 2334 5566665542 2346889997642 11111111 00 001011111
Q ss_pred ---CCEEEEEcccCCCCCcCeEEEEECCCCceEEec
Q 009910 309 ---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 309 ---~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
.+.+|+.|..++. +++|+.....-..+.
T Consensus 271 D~~tg~l~lsGkGD~t-----Ir~~e~~~~~~~~l~ 301 (568)
T PTZ00420 271 DESTGLIYLIGKGDGN-----CRYYQHSLGSIRKVN 301 (568)
T ss_pred eCCCCCEEEEEECCCe-----EEEEEccCCcEEeec
Confidence 4678888865544 888888766544444
No 151
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=56.93 E-value=2.1e+02 Score=28.40 Aligned_cols=178 Identities=14% Similarity=0.037 Sum_probs=90.0
Q ss_pred EEEEECCCCc-EEEeeec-CCCCCCCcceEEEEECCEEEEEccc-----CCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 009910 175 VWTFDTETEC-WSVVEAK-GDIPVARSGHTVVRASSVLILFGGE-----DGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (522)
Q Consensus 175 v~~yd~~t~~-W~~~~~~-~~~p~~r~~~~~~~~~~~iyv~GG~-----~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~ 247 (522)
++.+++++.. |+.+... ...+..|..=..+.-++.+|+---. .........+|++|+ .....++.. -..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---~~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---DDL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec---CcE
Confidence 6677765444 3555432 2455667665666666777763222 111234557999998 455555531 111
Q ss_pred CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC------CcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCC
Q 009910 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET------MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (522)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~------~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~ 321 (522)
...+.-+..-+++.+|+. ....+.+++|+... +. ....... ...++-...++--++.+|+.....+
T Consensus 163 ~~~NGla~SpDg~tly~a-----DT~~~~i~r~~~d~~~g~~~~~-~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g- 234 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVA-----DTPANRIHRYDLDPATGPIGGR-RGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGG- 234 (307)
T ss_pred EecCceEECCCCCEEEEE-----eCCCCeEEEEecCcccCccCCc-ceEEEcc-CCCCCCCceEEeCCCCEEEecccCC-
Confidence 222223333455567774 23346788887652 11 0011110 0122223333444788886444332
Q ss_pred CCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCC
Q 009910 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 322 ~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
..+.+|+++...-..+. .| ....++++++..+.+.|||..-..
T Consensus 235 ---~~v~~~~pdG~l~~~i~-lP------~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 235 ---GRVVRFNPDGKLLGEIK-LP------VKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ---ceEEEECCCCcEEEEEE-CC------CCCCccceEeCCCcCEEEEEecCC
Confidence 34899999844433333 22 123455555544456777776654
No 152
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.60 E-value=2.2e+02 Score=28.19 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=67.6
Q ss_pred CCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccc--eEEEEECC-EEEEEcccCCC
Q 009910 246 PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG--CCGVLCGT-KWYIAGGGSRK 321 (522)
Q Consensus 246 p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~--~~~~~~~~-~iyi~GG~~~~ 321 (522)
|.|-.+|.++... ...+++|+=.-+ .-+++||+.+.+=...-.. |..|.+ |++..-++ .+|..=. +-.
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a---~~gRHFyGHg~fs~dG~~LytTEn-d~~ 73 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLWA---PPGRHFYGHGVFSPDGRLLYTTEN-DYE 73 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEcC---CCCCEEecCEEEcCCCCEEEEecc-ccC
Confidence 4455677887776 445777764332 3588999988765443322 566664 44444444 4554433 223
Q ss_pred CCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC
Q 009910 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (522)
Q Consensus 322 ~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 376 (522)
....-|=+||.. ...+++...+..-. --|-+..+. +++.-++.-||....
T Consensus 74 ~g~G~IgVyd~~-~~~~ri~E~~s~GI---GPHel~l~p-DG~tLvVANGGI~Th 123 (305)
T PF07433_consen 74 TGRGVIGVYDAA-RGYRRIGEFPSHGI---GPHELLLMP-DGETLVVANGGIETH 123 (305)
T ss_pred CCcEEEEEEECc-CCcEEEeEecCCCc---ChhhEEEcC-CCCEEEEEcCCCccC
Confidence 334567899987 67777776554222 224444444 344456667887433
No 153
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=55.52 E-value=1.2e+02 Score=32.29 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCC
Q 009910 196 VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSK 272 (522)
Q Consensus 196 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~ 272 (522)
.|+.+.-++.. .-.||+.| .-.++|+++++.+.|-..- ..-.+--. ++.++ -..++.+||.++
T Consensus 132 IP~~GRDm~y~~~scDly~~g-------sg~evYRlNLEqGrfL~P~---~~~~~~lN--~v~in~~hgLla~Gt~~g-- 197 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVG-------SGSEVYRLNLEQGRFLNPF---ETDSGELN--VVSINEEHGLLACGTEDG-- 197 (703)
T ss_pred cCcCCccccccCCCccEEEee-------cCcceEEEEcccccccccc---ccccccce--eeeecCccceEEecccCc--
Confidence 34555555543 23567654 2367999999999986542 11111112 22222 223888898654
Q ss_pred CCCcEEEEEcCCCc
Q 009910 273 TLNDLYSLDFETMI 286 (522)
Q Consensus 273 ~~~~v~~yd~~~~~ 286 (522)
.|..+|+.+..
T Consensus 198 ---~VEfwDpR~ks 208 (703)
T KOG2321|consen 198 ---VVEFWDPRDKS 208 (703)
T ss_pred ---eEEEecchhhh
Confidence 48888886653
No 154
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=54.10 E-value=2e+02 Score=27.39 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=104.8
Q ss_pred CCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEc--ccCCCCCC-ceeEEEEECC-CCcEEEeeecC---C
Q 009910 123 RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVG--GKTDSGSD-RVSVWTFDTE-TECWSVVEAKG---D 193 (522)
Q Consensus 123 ~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~G--G~~~~~~~-~~~v~~yd~~-t~~W~~~~~~~---~ 193 (522)
..+|.+........ ......+..+.+. +++|++|- +....... ..-.+....+ -.+|+...... .
T Consensus 29 G~tWs~~~~v~~~~------~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~ 102 (275)
T PF13088_consen 29 GKTWSEPRIVADGP------KPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWF 102 (275)
T ss_dssp TTEEEEEEEEETST------BTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCC
T ss_pred CCeeCCCEEEeecc------ccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccc
Confidence 35898876532111 0112233333332 78988885 22221111 2222355555 45799875310 0
Q ss_pred --CCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcC-CCcEEEeecCCCCCCCCcce-EEEEECCcEEEEEcCCC
Q 009910 194 --IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSS 269 (522)
Q Consensus 194 --~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~g~~p~~r~~~-~~~~~~~~~lyv~GG~~ 269 (522)
.+.+-....+..-++++++. .+............|... -.+|+...... +...... +.+...+..|+++--..
T Consensus 103 ~~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~ 179 (275)
T PF13088_consen 103 GNFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE 179 (275)
T ss_dssp CSCEECSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC
T ss_pred cceeccceeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc
Confidence 11111222234447888887 221111123334445544 35699886321 2212222 33334555577664321
Q ss_pred CCCCCCcEEEEEcC-CCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCC
Q 009910 270 KSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 347 (522)
Q Consensus 270 ~~~~~~~v~~yd~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 347 (522)
... .-.+.+..+ ..+|+..... ..|.+.....++.+ +++++++.........-.++.-.-...+|+........
T Consensus 180 ~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~- 255 (275)
T PF13088_consen 180 GND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDG- 255 (275)
T ss_dssp SST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEE-
T ss_pred CCC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCC-
Confidence 111 223333333 5689987643 23555555454554 66888887732222222233333447899875543211
Q ss_pred CCCCCCcEEEEEeeCCccEEEE
Q 009910 348 VTSNKGFTLVLVQHKEKDFLVA 369 (522)
Q Consensus 348 ~~~r~~~~~~~~~~~~~~~l~v 369 (522)
+....+++..+...+ +.|+|
T Consensus 256 ~~~~~~Y~~~~~~~d--g~l~i 275 (275)
T PF13088_consen 256 PNGDSGYPSLTQLPD--GKLYI 275 (275)
T ss_dssp E-CCEEEEEEEEEET--TEEEE
T ss_pred CCCcEECCeeEEeCC--CcCCC
Confidence 123456666666533 34654
No 155
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=53.28 E-value=4.5e+02 Score=31.14 Aligned_cols=260 Identities=11% Similarity=0.016 Sum_probs=126.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCC-ccceEEEEE--CCEEEEEcccCCCCCCcee
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA-CRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (522)
++.|||.-= ..+.+.++|+....=..+..........-+..... ..-+.++.. ++.|||.-..+ ..
T Consensus 579 ~g~lyVaDs-----~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n------~~ 647 (1057)
T PLN02919 579 NNRLFISDS-----NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN------HA 647 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC------ce
Confidence 577898742 23678999987654333332111000000000000 112444443 46788864322 34
Q ss_pred EEEEECCCCcEEEeeecCCCC------------CCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEee
Q 009910 175 VWTFDTETECWSVVEAKGDIP------------VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 240 (522)
+.++|+.++.=+.+...+... .-..-+.+++. ++.|||... ..+.+++||+.+.......
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~------~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA------GQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC------CCCeEEEEECCCCeEEEEe
Confidence 888998887766554321100 00111234443 578888642 2355899998877655443
Q ss_pred cCCCC-------CC---CCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC-CCCCC----------
Q 009910 241 CTGTG-------PS---PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPS---------- 298 (522)
Q Consensus 241 ~~g~~-------p~---~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~p~---------- 298 (522)
..|.. +. ...-..+++. +++.|||.... .+.|.+||++++..+.+... +..+.
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 21110 00 0111123333 33458887543 35799999987654332210 00000
Q ss_pred ----Ccc--ceEEEE-ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCC------CCCC-CCCcEEEEEeeCCc
Q 009910 299 ----PRA--GCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------SVTS-NKGFTLVLVQHKEK 364 (522)
Q Consensus 299 ----~r~--~~~~~~-~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~------~~~~-r~~~~~~~~~~~~~ 364 (522)
... -.+++. -++.+||....+ ..|.+||+.+.....+...... .... ......+++..+
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d-- 869 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN-- 869 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC--
Confidence 000 112222 256799886544 4599999998887765532110 0000 011233344433
Q ss_pred cEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 365 DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 365 ~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.|||.-.. .+.|.++|+++.+
T Consensus 870 G~lyVaDt~----Nn~Irvid~~~~~ 891 (1057)
T PLN02919 870 GRLFVADTN----NSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEECC----CCEEEEEECCCCc
Confidence 347776443 3468888887765
No 156
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=52.64 E-value=2.9e+02 Score=28.72 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=34.3
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE----EECCEEEEEcccCCC
Q 009910 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV----RASSVLILFGGEDGK 219 (522)
Q Consensus 149 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~----~~~~~iyv~GG~~~~ 219 (522)
-++++..+.-.|++||-.. ..+|.+...++.--.+ -. +.+..++ ..++..++-||.++.
T Consensus 84 v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v------~~-aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNV------LS-AHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHH------HH-hhccceeEEEEeCCCcEEEecCCCcc
Confidence 4777777777888887322 2388877777653211 11 1222222 235788888887654
No 157
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.72 E-value=2.6e+02 Score=27.57 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=75.5
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEE---E---ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCC
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVV---R---ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~---~---~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 245 (522)
.+.|..||.++++-+.+=.. .+-.++.-..-+ . ++++|++.-+- +...--+|..|..+..=+.+. ..
T Consensus 77 YSHVH~yd~e~~~VrLLWke-sih~~~~WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~~~L~---~~ 149 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKE-SIHDKTKWAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKAEKLS---SN 149 (339)
T ss_pred cceEEEEEcCCCeEEEEEec-ccCCccccccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCceeecc---CC
Confidence 34699999999873332211 122222222211 1 25788886432 223345899999998888876 44
Q ss_pred CCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE--EEeeeC----CCCCCCccceEEEEECCEEEEE-ccc
Q 009910 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIR----GFHPSPRAGCCGVLCGTKWYIA-GGG 318 (522)
Q Consensus 246 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~----~~~p~~r~~~~~~~~~~~iyi~-GG~ 318 (522)
|.+. .+.+.+..++-+ .+-..-.+.+.+||+.+++| +..... +.....|....++...+++|.| +|.
T Consensus 150 ps~K----G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGG 223 (339)
T PF09910_consen 150 PSLK----GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGG 223 (339)
T ss_pred CCcC----ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEecc
Confidence 4442 223333323322 22234467899999999999 333221 1111223344456667777754 332
Q ss_pred CCCCCcCeEEEEECC
Q 009910 319 SRKKRHAETLIFDIL 333 (522)
Q Consensus 319 ~~~~~~~~v~~yd~~ 333 (522)
+.+.||.
T Consensus 224 --------i~vgnP~ 230 (339)
T PF09910_consen 224 --------IFVGNPY 230 (339)
T ss_pred --------EEEeCCC
Confidence 6666665
No 158
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=50.64 E-value=2e+02 Score=26.23 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=45.8
Q ss_pred ccCCCCCccCcEEEEEcCCCcEEEeecCCC--CCCCCcceEEEEECC-cEEEEEcCC-CCCCCCCcEEEEEcCCCcEEEe
Q 009910 215 GEDGKRRKLNDLHMFDLKSLTWLPLHCTGT--GPSPRSNHVAALYDD-KNLLIFGGS-SKSKTLNDLYSLDFETMIWTRI 290 (522)
Q Consensus 215 G~~~~~~~~~~v~~yd~~t~~W~~~~~~g~--~p~~r~~~~~~~~~~-~~lyv~GG~-~~~~~~~~v~~yd~~~~~W~~~ 290 (522)
|.+...+...++|++|..++.|..+..... --.|. -+.-+++ ..++++|.. +.-.--..+|.|++.++.-+.+
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~l 155 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTEL 155 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEe
Confidence 334444567889999999988877643211 12233 1334444 445566632 1112235799999999998888
Q ss_pred eeC
Q 009910 291 KIR 293 (522)
Q Consensus 291 ~~~ 293 (522)
...
T Consensus 156 y~~ 158 (200)
T PF15525_consen 156 YEW 158 (200)
T ss_pred eec
Confidence 764
No 159
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=50.35 E-value=2.7e+02 Score=27.62 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCc-EEEeeecCCC--CCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDI--PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
-+.+-++||...+.-+.+.|.++|-.... -.++.-..+. -.-|..+-+++..++|||+-=. .....+..+|.
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~----~n~k~l~~~et- 132 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFP----DNPKLLHVIET- 132 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcC----CChhheeeeec-
Confidence 36677788877667778889999844433 2222211111 1224556677778888877211 11223444432
Q ss_pred CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE---EEeeeCCCCCCCccceEEEEE-
Q 009910 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW---TRIKIRGFHPSPRAGCCGVLC- 308 (522)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W---~~~~~~~~~p~~r~~~~~~~~- 308 (522)
.+.|...++.+...++.+++|=|... ..+.+.|+....- ..+ +.--..-+++.+
T Consensus 133 ------------~~NPkGlC~~~~~~~k~~LafPg~k~----GqvQi~dL~~~~~~~p~~I------~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 133 ------------RSNPKGLCSLCPTSNKSLLAFPGFKT----GQVQIVDLASTKPNAPSII------NAHDSDIACVALN 190 (346)
T ss_pred ------------ccCCCceEeecCCCCceEEEcCCCcc----ceEEEEEhhhcCcCCceEE------EcccCceeEEEEc
Confidence 22233344455555666888888643 4677777754332 111 111122233333
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 309 -GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 309 -~~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
+|.++..+...+. =|.+||..+++
T Consensus 191 ~~Gt~vATaStkGT----LIRIFdt~~g~ 215 (346)
T KOG2111|consen 191 LQGTLVATASTKGT----LIRIFDTEDGT 215 (346)
T ss_pred CCccEEEEeccCcE----EEEEEEcCCCc
Confidence 5666666554332 26678877765
No 160
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=49.92 E-value=1.3e+02 Score=29.93 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=53.5
Q ss_pred cEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceE
Q 009910 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (522)
Q Consensus 225 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~ 304 (522)
.+-+++..|...... +..-+.+-++..+.++ ++|-|..+ +.+-.||.+.+.--++-. | --.-..
T Consensus 341 TikvW~~st~efvRt-----l~gHkRGIAClQYr~r-lvVSGSSD-----ntIRlwdi~~G~cLRvLe-G----HEeLvR 404 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRT-----LNGHKRGIACLQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVLE-G----HEELVR 404 (499)
T ss_pred eEEEEeccceeeehh-----hhcccccceehhccCe-EEEecCCC-----ceEEEEeccccHHHHHHh-c----hHHhhh
Confidence 356667766655443 3344556677788888 77766543 458888887764332211 0 000113
Q ss_pred EEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 305 GVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 305 ~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
++.++++=+|-||+++. |-++|+.+
T Consensus 405 ciRFd~krIVSGaYDGk-----ikvWdl~a 429 (499)
T KOG0281|consen 405 CIRFDNKRIVSGAYDGK-----IKVWDLQA 429 (499)
T ss_pred heeecCceeeeccccce-----EEEEeccc
Confidence 45678888899998875 55666543
No 161
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=49.92 E-value=2.4e+02 Score=26.94 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=112.5
Q ss_pred ccccccccccccCCCCCCCCccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEE
Q 009910 16 KVQLSDSAQAIRSPIRPPKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAA 95 (522)
Q Consensus 16 ~~~~~d~~~~~~~p~~~~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~ 95 (522)
.+....+..++|..-+... .+++++..+........... ........|...- .+|.+-.+.+.+
T Consensus 11 ~~~~~~~~~GsWmrDpl~~------~~r~~~~~~~~~~~l~E~~~-------~~~~~~~~~~~~~---~lp~~~~gTg~V 74 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA------DDRIYVMNYFDGLMLTEYTN-------LEDFKRGRKAEKY---RLPYSWDGTGHV 74 (249)
T ss_pred EEEeeccccceeecCCCcc------cCceEEeccccCceEEEecc-------HHHhhccCcceEE---eCCCCccccceE
Confidence 3556666668885444221 67788885533222222111 1112455565554 678888888888
Q ss_pred EECCEEEEEcCcCCCCCcccEEEEEcCCC---cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCc
Q 009910 96 VIGNKMIVVGGESGNGLLDDVQVLNFDRF---SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (522)
Q Consensus 96 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 172 (522)
++++.+|.-.+. ...+.+|++.+. .|..++.+....+. |....+-...=+++.++-++++=-..+ ....
T Consensus 75 VynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~a~y~~~~--~y~~~g~sdiD~avDE~GLWviYat~~-~~g~ 146 (249)
T KOG3545|consen 75 VYNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPYAGYHNPS--PYYWGGHSDIDLAVDENGLWVIYATPE-NAGT 146 (249)
T ss_pred EEcceEEeeccC-----CcceEEEEeecceeeeeeeccccccCCCc--ccccCCCccccceecccceeEEecccc-cCCc
Confidence 899988876642 467889999884 56777665443321 111111112224555555665522111 1112
Q ss_pred eeEEEEECCC----CcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcE-EEEEcCCCcEEEeecCCCCCC
Q 009910 173 VSVWTFDTET----ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL-HMFDLKSLTWLPLHCTGTGPS 247 (522)
Q Consensus 173 ~~v~~yd~~t----~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v-~~yd~~t~~W~~~~~~g~~p~ 247 (522)
..+-++|+.+ .+|..- .+....+ .+..+-|.+|++=...... ..+ +.||..+++=..+ ++|.
T Consensus 147 iv~skLdp~tl~~e~tW~T~-----~~k~~~~-~aF~iCGvLY~v~S~~~~~---~~i~yaydt~~~~~~~~----~ipf 213 (249)
T KOG3545|consen 147 IVLSKLDPETLEVERTWNTT-----LPKRSAG-NAFMICGVLYVVHSYNCTH---TQISYAYDTTTGTQERI----DLPF 213 (249)
T ss_pred EEeeccCHHHhheeeeeccc-----cCCCCcC-ceEEEeeeeEEEeccccCC---ceEEEEEEcCCCceecc----cccc
Confidence 2246777754 346431 3444333 4445567788875544331 223 7899988876555 3444
Q ss_pred CC--cceEEEEEC--CcEEEEE
Q 009910 248 PR--SNHVAALYD--DKNLLIF 265 (522)
Q Consensus 248 ~r--~~~~~~~~~--~~~lyv~ 265 (522)
+. ...++.-++ ++.+|++
T Consensus 214 ~N~y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 214 PNPYSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred cchhhhhhccCCCcccceeeEe
Confidence 33 333333332 3458876
No 162
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=48.72 E-value=2.7e+02 Score=27.19 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=84.4
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCCCccCcE
Q 009910 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDL 226 (522)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v 226 (522)
..-+.+..+++.+++|+... +..-|-.-++|.+.- .+..|+.+..+ +.+.+=++.| + -..+
T Consensus 46 l~ia~~~~g~~gwlVg~rgt-------iletdd~g~tw~qal----~~~gr~~f~sv~f~~~egw~vG------e-~sql 107 (339)
T COG4447 46 LDIAFTESGSHGWLVGGRGT-------ILETDDGGITWAQAL----DFLGRHAFHSVSFLGMEGWIVG------E-PSQL 107 (339)
T ss_pred cceeEeecCcceEEEcCcce-------EEEecCCcccchhhh----chhhhhheeeeeeecccccccC------C-cceE
Confidence 34455666789999999752 666677778898765 45545554444 4444455554 1 2345
Q ss_pred EEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCC--CCccceE
Q 009910 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP--SPRAGCC 304 (522)
Q Consensus 227 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p--~~r~~~~ 304 (522)
+.-+-.-.+|.+++....+|.+ -.+...+++++-+++|-+ ..|+.-+-..+.|+.+..... + .+|. -
T Consensus 108 l~T~DgGqsWARi~~~e~~eg~--~~sI~f~d~q~g~m~gd~------Gail~T~DgGk~Wk~l~e~~v-~~~~~n~--i 176 (339)
T COG4447 108 LHTTDGGQSWARIPLSEKLEGF--PDSITFLDDQRGEMLGDQ------GAILKTTDGGKNWKALVEKAV-GLAVPNE--I 176 (339)
T ss_pred EEecCCCcchhhchhhcCCCCC--cceeEEecchhhhhhccc------ceEEEecCCcccHhHhccccc-chhhhhh--h
Confidence 6656667899999754333333 234566677666777643 246666666788998876421 2 2222 2
Q ss_pred EEEECCEEEEEccc
Q 009910 305 GVLCGTKWYIAGGG 318 (522)
Q Consensus 305 ~~~~~~~iyi~GG~ 318 (522)
+...+++.+++|-.
T Consensus 177 a~s~dng~vaVg~r 190 (339)
T COG4447 177 ARSADNGYVAVGAR 190 (339)
T ss_pred hhhccCCeEEEecC
Confidence 22346666666644
No 163
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=48.47 E-value=3.5e+02 Score=28.42 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=119.6
Q ss_pred eEEEEECCEEEEEcCcCCC---------CCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEE
Q 009910 92 HAAAVIGNKMIVVGGESGN---------GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLV 162 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~ 162 (522)
.+..++++-+.|+|-..-+ +.-..+|+=.-...+.+++-.+. . .-.+-+.++++||.+
T Consensus 175 athiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~------------~-~vS~PmIV~~RvYFl 241 (668)
T COG4946 175 ATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLD------------G-NVSSPMIVGERVYFL 241 (668)
T ss_pred eeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecC------------C-CcCCceEEcceEEEE
Confidence 3444555557777752211 22334555444444565555431 1 112334568999998
Q ss_pred cccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC
Q 009910 163 GGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (522)
Q Consensus 163 GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 242 (522)
--..+.+ .+|.-|++.+--++-..-. --.+|.. --+++-+|| +.-.++|.|||+++.-+++..
T Consensus 242 sD~eG~G----nlYSvdldGkDlrrHTnFt-dYY~R~~----nsDGkrIvF-------q~~GdIylydP~td~lekldI- 304 (668)
T COG4946 242 SDHEGVG----NLYSVDLDGKDLRRHTNFT-DYYPRNA----NSDGKRIVF-------QNAGDIYLYDPETDSLEKLDI- 304 (668)
T ss_pred ecccCcc----ceEEeccCCchhhhcCCch-hcccccc----CCCCcEEEE-------ecCCcEEEeCCCcCcceeeec-
Confidence 6554433 3777777665443322100 0112221 225666666 234679999999999988864
Q ss_pred CCCCCCCcceE------------EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECC
Q 009910 243 GTGPSPRSNHV------------AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310 (522)
Q Consensus 243 g~~p~~r~~~~------------~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 310 (522)
.+|..|..-- -++.++.++.++. ..+.+++++..+---++.. ..|..+.-...++
T Consensus 305 -~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------RGkaFi~~~~~~~~iqv~~-----~~~VrY~r~~~~~ 371 (668)
T COG4946 305 -GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------RGKAFIMRPWDGYSIQVGK-----KGGVRYRRIQVDP 371 (668)
T ss_pred -CCccccccccccccCHHHhhhhhccCCCcEEEEEe-------cCcEEEECCCCCeeEEcCC-----CCceEEEEEccCC
Confidence 3344332111 1223344222211 2245666654332222221 2233333334455
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 311 ~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+-.++|-.+++ .+-+||..+.+-+++... . ...-++.+..+++ .++++.. .-++|++|++++.
T Consensus 372 e~~vigt~dgD----~l~iyd~~~~e~kr~e~~-----l--g~I~av~vs~dGK--~~vvaNd----r~el~vididngn 434 (668)
T COG4946 372 EGDVIGTNDGD----KLGIYDKDGGEVKRIEKD-----L--GNIEAVKVSPDGK--KVVVAND----RFELWVIDIDNGN 434 (668)
T ss_pred cceEEeccCCc----eEEEEecCCceEEEeeCC-----c--cceEEEEEcCCCc--EEEEEcC----ceEEEEEEecCCC
Confidence 56777766653 478999988887765521 1 1123333333333 3333332 2268888887765
No 164
>PRK01742 tolB translocation protein TolB; Provisional
Probab=47.95 E-value=3.4e+02 Score=28.17 Aligned_cols=97 Identities=7% Similarity=0.050 Sum_probs=50.3
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCE-EEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
.++|.+|+.++....+.. -.. ........-+++ |+......+ ...+|.+|..+..-+.+.. . .+
T Consensus 272 ~~Iy~~d~~~~~~~~lt~---~~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~----~~- 336 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTS---GAG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R----GY- 336 (429)
T ss_pred EEEEEEECCCCCeEeecc---CCC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C----CC-
Confidence 359999998888766652 111 111112223444 444332222 2467878776554333321 1 11
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEee
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 291 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 291 (522)
.....-+++.|++.++ +.++.+|+.++.++.+.
T Consensus 337 ~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 337 SAQISADGKTLVMING-------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEec
Confidence 1222234554544433 46888999999887664
No 165
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=46.92 E-value=3.7e+02 Score=28.27 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=84.4
Q ss_pred eEEEEECCCC-c-EEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 174 SVWTFDTETE-C-WSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 174 ~v~~yd~~t~-~-W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
.+.++|...+ . -..+. ..+... ++++. -.+.+++.|+.+.. +.++|..+.+-...- ..-..
T Consensus 226 tiriwd~~~~~~~~~~l~---gH~~~v--~~~~f~p~g~~i~Sgs~D~t------vriWd~~~~~~~~~l---~~hs~-- 289 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLK---GHSTYV--TSVAFSPDGNLLVSGSDDGT------VRIWDVRTGECVRKL---KGHSD-- 289 (456)
T ss_pred eEEEeeccCCCeEEEEec---CCCCce--EEEEecCCCCEEEEecCCCc------EEEEeccCCeEEEee---eccCC--
Confidence 4888888444 2 22222 233333 33333 34589999887654 888899885544332 11111
Q ss_pred ceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEE
Q 009910 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 251 ~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~ 329 (522)
.-+++.+ .+..+++.+.++ ..+.+||..++.-..+........+..-..+....+..|++-+..+. .+-.
T Consensus 290 ~is~~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----~~~~ 360 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----TLKL 360 (456)
T ss_pred ceEEEEECCCCCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----eEEE
Confidence 1122222 233366666543 35899998887643111111112221122222334444444443331 2556
Q ss_pred EECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 330 yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+|+....--..-..... ..+..++.+... .+..++.|+.+. .|.++|+.+..
T Consensus 361 w~l~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~i~sg~~d~----~v~~~~~~s~~ 412 (456)
T KOG0266|consen 361 WDLRSGKSVGTYTGHSN--LVRCIFSPTLST---GGKLIYSGSEDG----SVYVWDSSSGG 412 (456)
T ss_pred EEccCCcceeeecccCC--cceeEecccccC---CCCeEEEEeCCc----eEEEEeCCccc
Confidence 66665432221110111 112223333222 233555555433 58888887644
No 166
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=46.07 E-value=2.3e+02 Score=25.77 Aligned_cols=72 Identities=8% Similarity=0.059 Sum_probs=42.8
Q ss_pred CCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCE-EEEEcccCCCCCCceeEEEEECCCCcEEEee
Q 009910 111 GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVE 189 (522)
Q Consensus 111 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 189 (522)
....++|++|..++.|..+...... ....|. ...-..+.. ++++|-..+.-..-..+|+|++.++.-+.+.
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~------~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNE------EKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcc------cccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 3467899999999988766442110 011111 222222444 5556644433334456999999999988887
Q ss_pred e
Q 009910 190 A 190 (522)
Q Consensus 190 ~ 190 (522)
.
T Consensus 157 ~ 157 (200)
T PF15525_consen 157 E 157 (200)
T ss_pred e
Confidence 4
No 167
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=44.90 E-value=3.4e+02 Score=27.36 Aligned_cols=147 Identities=17% Similarity=0.244 Sum_probs=74.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++.+.+.||.+ +.-++++..+..|--.-+- .. -..-.+....++.+++.|++.+. |.+
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~eltg----------HK-DSVt~~~FshdgtlLATGdmsG~------v~v 132 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAGELTG----------HK-DSVTCCSFSHDGTLLATGDMSGK------VLV 132 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcceeEecC----------CC-CceEEEEEccCceEEEecCCCcc------EEE
Confidence 56788888865 4557888888775333220 00 00112233447888888988642 444
Q ss_pred EECCC--CcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEE
Q 009910 178 FDTET--ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (522)
Q Consensus 178 yd~~t--~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (522)
+...+ .+|....+..++---+. |- ...|+++|-.+ ..+|+|.+.+..-.++- ..+..+....-.
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~W-Hp----~a~illAG~~D------GsvWmw~ip~~~~~kv~---~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKW-HP----RAHILLAGSTD------GSVWMWQIPSQALCKVM---SGHNSPCTCGEF 198 (399)
T ss_pred EEcccCceEEEeecccCceEEEEe-cc----cccEEEeecCC------CcEEEEECCCcceeeEe---cCCCCCcccccc
Confidence 44444 45765422122211111 11 23466666433 34899998876444442 222222222222
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
.-+++ -.+.|-.+ ..+.++|+++.+
T Consensus 199 ~pdGK-r~~tgy~d-----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 199 IPDGK-RILTGYDD-----GTIIVWNPKTGQ 223 (399)
T ss_pred cCCCc-eEEEEecC-----ceEEEEecCCCc
Confidence 33445 33333222 258888888763
No 168
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=44.35 E-value=3.1e+02 Score=26.74 Aligned_cols=262 Identities=15% Similarity=0.158 Sum_probs=129.2
Q ss_pred CCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEE-ECCEEEEEcCcCCCCCcccEEE
Q 009910 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAV-IGNKMIVVGGESGNGLLDDVQV 118 (522)
Q Consensus 40 ~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~ 118 (522)
+++.-+++||+..-. ..+. ..+.|++.. .+..|+.+..+. ++.+=++.|= .+.++.
T Consensus 53 ~g~~gwlVg~rgtil---------etdd----~g~tw~qal----~~~gr~~f~sv~f~~~egw~vGe------~sqll~ 109 (339)
T COG4447 53 SGSHGWLVGGRGTIL---------ETDD----GGITWAQAL----DFLGRHAFHSVSFLGMEGWIVGE------PSQLLH 109 (339)
T ss_pred cCcceEEEcCcceEE---------EecC----Ccccchhhh----chhhhhheeeeeeecccccccCC------cceEEE
Confidence 356688888843211 1111 567898874 455566555443 3444444441 234555
Q ss_pred EEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCC
Q 009910 119 LNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVA 197 (522)
Q Consensus 119 yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~ 197 (522)
=+-...+|.+++... .++. .-.++..++ +.-|++|-+. .++.-+---+.|+.+.+.. .+..
T Consensus 110 T~DgGqsWARi~~~e---------~~eg-~~~sI~f~d~q~g~m~gd~G-------ail~T~DgGk~Wk~l~e~~-v~~~ 171 (339)
T COG4447 110 TTDGGQSWARIPLSE---------KLEG-FPDSITFLDDQRGEMLGDQG-------AILKTTDGGKNWKALVEKA-VGLA 171 (339)
T ss_pred ecCCCcchhhchhhc---------CCCC-CcceeEEecchhhhhhcccc-------eEEEecCCcccHhHhcccc-cchh
Confidence 555667999988642 2222 223444444 4566666532 3655555567799876532 2311
Q ss_pred CcceEEEEECCEEEEEcccCCCCCccCcEEE-EEcCCCcEEEeecCCCCCCCCcceEEEEECCc--EEEEEcCCCCCCCC
Q 009910 198 RSGHTVVRASSVLILFGGEDGKRRKLNDLHM-FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK--NLLIFGGSSKSKTL 274 (522)
Q Consensus 198 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~--~lyv~GG~~~~~~~ 274 (522)
.-...+...+|...++|-+.. +++ .+.-...|... .....|..-++..-+.. -+++.||..
T Consensus 172 ~~n~ia~s~dng~vaVg~rGs-------~f~T~~aGqt~~~~~----g~~s~~~letmg~adag~~g~la~g~qg----- 235 (339)
T COG4447 172 VPNEIARSADNGYVAVGARGS-------FFSTWGAGQTVWLPH----GRNSSRRLETMGLADAGSKGLLARGGQG----- 235 (339)
T ss_pred hhhhhhhhccCCeEEEecCcc-------eEecCCCCccEEecc----CCCccchhcccccccCCccceEEEcccc-----
Confidence 222223344666667764431 111 12222223222 12222322233333322 478888763
Q ss_pred CcEEEEEcCCCcEEEeeeCCCCCCCccceE----EEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCC
Q 009910 275 NDLYSLDFETMIWTRIKIRGFHPSPRAGCC----GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS 350 (522)
Q Consensus 275 ~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~----~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 350 (522)
+.+......+.|+.+.... ...|.... +-...+.+||.|+.. .+..--.-..+|++....+. ..
T Consensus 236 -~~f~~~~~gD~wsd~~~~~--~~g~~~~Gl~d~a~~a~~~v~v~G~gG------nvl~StdgG~t~skd~g~~e---r~ 303 (339)
T COG4447 236 -DQFSWVCGGDEWSDQGEPV--NLGRRSWGLLDFAPRAPPEVWVSGIGG------NVLASTDGGTTWSKDGGVEE---RV 303 (339)
T ss_pred -ceeecCCCcccccccccch--hcccCCCccccccccCCCCeEEeccCc------cEEEecCCCeeEeccCChhh---hh
Confidence 3455666778898876521 12222222 122378899988732 24444445677887543221 11
Q ss_pred CCCcEEEEEeeCCccEEEEEcCC
Q 009910 351 NKGFTLVLVQHKEKDFLVAFGGI 373 (522)
Q Consensus 351 r~~~~~~~~~~~~~~~l~v~GG~ 373 (522)
-..++++... .++.+++|-.
T Consensus 304 s~l~~V~~ts---~~~~~l~Gq~ 323 (339)
T COG4447 304 SNLYSVVFTS---PKAGFLCGQK 323 (339)
T ss_pred hhhheEEecc---CCceEEEcCC
Confidence 1134444444 3456777643
No 169
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=42.85 E-value=3.4e+02 Score=26.72 Aligned_cols=105 Identities=14% Similarity=0.229 Sum_probs=57.0
Q ss_pred EEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCc
Q 009910 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDR 172 (522)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 172 (522)
++..+..=.+.||.. ..|-+||+++..=..+... ..+-+ ++.. .....+|.||++.
T Consensus 60 c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth----------~~~i~---ci~~~~~~~~vIsgsWD~----- 116 (323)
T KOG1036|consen 60 CAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTH----------DEGIR---CIEYSYEVGCVISGSWDK----- 116 (323)
T ss_pred eeccCCceEEEeccC-----ceEEEEEecCCcceeeccC----------CCceE---EEEeeccCCeEEEcccCc-----
Confidence 344455555667655 4688999998776666542 11111 1111 2355677888863
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
.+..+|+....=. +..-....-+++.+.+++|+ +|+.+ ..+.+||+.+.
T Consensus 117 -~ik~wD~R~~~~~-----~~~d~~kkVy~~~v~g~~Lv-Vg~~~------r~v~iyDLRn~ 165 (323)
T KOG1036|consen 117 -TIKFWDPRNKVVV-----GTFDQGKKVYCMDVSGNRLV-VGTSD------RKVLIYDLRNL 165 (323)
T ss_pred -cEEEEeccccccc-----cccccCceEEEEeccCCEEE-EeecC------ceEEEEEcccc
Confidence 3777787762211 11222223445555555554 45443 34888998654
No 170
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=40.25 E-value=4.2e+02 Score=27.07 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=54.4
Q ss_pred CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC--CCCCCCc--cceEEEEE
Q 009910 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPSPR--AGCCGVLC 308 (522)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--~~~p~~r--~~~~~~~~ 308 (522)
.+.|+.+. . ...+ .--++.++|+ +|++.- ...++.++.+- .-+++.+. ..+..++ ...-.+..
T Consensus 189 ~~~Wt~l~---~-~~~~-~~DIi~~kGk-fYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALK---Q-MGYH-FSDIIVHKGQ-TYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEcc---C-CCce-eeEEEEECCE-EEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE
Confidence 38999995 3 2222 3356778888 888731 23577777431 11222211 0000111 11224455
Q ss_pred CCEEEEEcccCCCC--------------CcCeEEEEECCCCceEEeccCCC
Q 009910 309 GTKWYIAGGGSRKK--------------RHAETLIFDILKGEWSVAITSPS 345 (522)
Q Consensus 309 ~~~iyi~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~~~p~ 345 (522)
.++++++....... ..-+|+..|.+..+|.++..+..
T Consensus 256 ~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 256 CGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred CCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 78899888742110 11256777888899999886543
No 171
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=39.59 E-value=4.6e+02 Score=27.34 Aligned_cols=151 Identities=14% Similarity=0.089 Sum_probs=75.0
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
..++.+|+.+++=..+.. .+..-..++..-.+.+|.+..=.+ -..++|.+|+.+.+=.++. .. ..+..+
T Consensus 218 ~~i~~~~l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~rd----g~~~iy~~dl~~~~~~~Lt---~~-~gi~~~ 286 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLT---NG-FGINTS 286 (425)
T ss_pred ceEEEEeccCCccceeec---cCCccCCccCCCCCCEEEEEECCC----CCccEEEEcCCCCcceecc---cC-CccccC
Confidence 347777777766554442 111111122222233444333222 2467999999887744432 11 122223
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEEC
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 332 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~ 332 (522)
-.-.-+++.|+..-...+ ..+++++|++..+=+++...+ ....+....-+++.+++-+..... -++..+|+
T Consensus 287 Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~----~~~~~p~~SpdG~~i~~~~~~~g~--~~i~~~~~ 357 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSG----GGNSNPVWSPDGDKIVFESSSGGQ--WDIDKNDL 357 (425)
T ss_pred ccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccC----CCCcCccCCCCCCEEEEEeccCCc--eeeEEecc
Confidence 333345553443322222 238999999988777776531 111122222244433333333221 56888998
Q ss_pred CCCc-eEEeccC
Q 009910 333 LKGE-WSVAITS 343 (522)
Q Consensus 333 ~~~~-W~~~~~~ 343 (522)
.+.. |+.+...
T Consensus 358 ~~~~~~~~lt~~ 369 (425)
T COG0823 358 ASGGKIRILTST 369 (425)
T ss_pred CCCCcEEEcccc
Confidence 8776 8887653
No 172
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.34 E-value=4.3e+02 Score=26.91 Aligned_cols=97 Identities=22% Similarity=0.146 Sum_probs=49.2
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
...|-.||+..+. +.+....-+-.+...-+.+ .++..+++| ....++..||..+.+--.....|..-..|+
T Consensus 225 ~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~-p~gn~Iy~g------n~~g~l~~FD~r~~kl~g~~~kg~tGsirs- 295 (412)
T KOG3881|consen 225 YHQVRLYDTRHQR-RPVAQFDFLENPISSTGLT-PSGNFIYTG------NTKGQLAKFDLRGGKLLGCGLKGITGSIRS- 295 (412)
T ss_pred ceeEEEecCcccC-cceeEeccccCcceeeeec-CCCcEEEEe------cccchhheecccCceeeccccCCccCCcce-
Confidence 3458899998665 2333211122232222222 234444443 345678999998775433322222222232
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 284 (522)
...+++..++..+|.+. -+-+||.++
T Consensus 296 --ih~hp~~~~las~GLDR-----yvRIhD~kt 321 (412)
T KOG3881|consen 296 --IHCHPTHPVLASCGLDR-----YVRIHDIKT 321 (412)
T ss_pred --EEEcCCCceEEeeccce-----eEEEeeccc
Confidence 33445544777777643 367788766
No 173
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=37.87 E-value=4.6e+02 Score=26.74 Aligned_cols=185 Identities=12% Similarity=0.160 Sum_probs=89.8
Q ss_pred cccEEEEEcCCCc-EEEcccccccCCCCCCCCCCCccceEEEEE---CCEEEEEcccCCCCCCceeEEEEECCCCcEEEe
Q 009910 113 LDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVV 188 (522)
Q Consensus 113 ~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 188 (522)
.+.+.+.|..+++ -..++.. . ..|..... +..+|+.+. + ..+-++|+.+.+- +
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~-------------~-~~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~~--v 71 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG-------------G-APHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGKV--V 71 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S-------------T-TEEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSSE--E
T ss_pred CCEEEEEECCCCeEEEEEcCC-------------C-CceeEEEecCCCCEEEEEcC-C------CeEEEEECCcccE--E
Confidence 3678888988865 3344331 1 12444333 467999853 2 2488999999883 2
Q ss_pred eecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCC----CCCCCcceEEEEECCcEEE
Q 009910 189 EAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT----GPSPRSNHVAALYDDKNLL 263 (522)
Q Consensus 189 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~----~p~~r~~~~~~~~~~~~ly 263 (522)
.. .+.......++. -+++.++.+.+ ..+.+.++|.++.+=.+.-+.+. .+.+|...-....... .|
T Consensus 72 ~~---i~~G~~~~~i~~s~DG~~~~v~n~-----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~f 142 (369)
T PF02239_consen 72 AT---IKVGGNPRGIAVSPDGKYVYVANY-----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EF 142 (369)
T ss_dssp EE---EE-SSEEEEEEE--TTTEEEEEEE-----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EE
T ss_pred EE---EecCCCcceEEEcCCCCEEEEEec-----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EE
Confidence 21 333444444443 35554444433 23568899988765333211111 1334432222223344 45
Q ss_pred EEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 009910 264 IFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (522)
Q Consensus 264 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (522)
|+--. ...++|..|.....=...... ...+.-|-+..- +++.|+.+-.. .+.+-+.|..+++-..+
T Consensus 143 Vv~lk----d~~~I~vVdy~d~~~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 143 VVNLK----DTGEIWVVDYSDPKNLKVTTI---KVGRFPHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEET----TTTEEEEEETTTSSCEEEEEE---E--TTEEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEEE
T ss_pred EEEEc----cCCeEEEEEeccccccceeee---cccccccccccCcccceeeecccc----cceeEEEeeccceEEEE
Confidence 54221 235799998765421122222 345566666555 34444444222 24788999888765443
No 174
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=37.80 E-value=22 Score=28.11 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=27.4
Q ss_pred ccCcccchhHHHhhhhhhhHHHHHHH-hhhccc
Q 009910 488 KNSEDETSFVQIMTNLEHYLVLQAYI-NFMSQR 519 (522)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 519 (522)
+-.|.+.+|.++.++++..-++|++| .++..|
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eR 42 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAER 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999 777665
No 175
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.65 E-value=4.1e+02 Score=26.20 Aligned_cols=121 Identities=16% Similarity=0.267 Sum_probs=69.2
Q ss_pred cceEEEEECCEEEEEcCcCCC-----------------CCcccEEEEEcCCCc----EEEcccccccCCCCCCCCCCCcc
Q 009910 90 FNHAAAVIGNKMIVVGGESGN-----------------GLLDDVQVLNFDRFS----WTAASSKLYLSPSSLPLKIPACR 148 (522)
Q Consensus 90 ~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~r~ 148 (522)
.+.++..+++.|| |||+-.. ...+.|+.||..+++ |++--.. +..
T Consensus 38 TYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~-------------~~~ 103 (339)
T PF09910_consen 38 TYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHD-------------KTK 103 (339)
T ss_pred cceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCC-------------ccc
Confidence 4455566677666 5774211 235679999998875 6544321 111
Q ss_pred ceEEE------EECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCc
Q 009910 149 GHSLI------SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRK 222 (522)
Q Consensus 149 ~~~~~------~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 222 (522)
...=+ .++++|++.-+- +...--||..|..++.-+.+.. -|.. -.+...+..+| |...-..-
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~~~L~~---~ps~---KG~~~~D~a~F---~i~~~~~g 171 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKAEKLSS---NPSL---KGTLVHDYACF---GINNFHKG 171 (339)
T ss_pred cccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCceeeccC---CCCc---CceEeeeeEEE---eccccccC
Confidence 11111 125778876432 2233459999999998887763 3333 12233333333 22333344
Q ss_pred cCcEEEEEcCCCcE
Q 009910 223 LNDLHMFDLKSLTW 236 (522)
Q Consensus 223 ~~~v~~yd~~t~~W 236 (522)
.+.+.+||+.+++|
T Consensus 172 ~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 172 VSGIHCLDLISGKW 185 (339)
T ss_pred CceEEEEEccCCeE
Confidence 67899999999999
No 176
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=37.32 E-value=6.7e+02 Score=28.51 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=21.0
Q ss_pred eEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEe
Q 009910 201 HTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (522)
Q Consensus 201 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 239 (522)
.+-+++++.||+... .+.++.+|.+|.+ |+.-
T Consensus 188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEc
Confidence 344567999999732 3457777877643 7654
No 177
>PTZ00420 coronin; Provisional
Probab=35.07 E-value=6.3e+02 Score=27.55 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCCCcCeEEEEECCCCceE
Q 009910 260 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (522)
Q Consensus 260 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~ 338 (522)
..+++.||.++ .+.+||+.+.+= +... ..+..-.++.. .++.+++.++.++ .+.+||+.+.+=
T Consensus 138 ~~iLaSgS~Dg-----tIrIWDl~tg~~--~~~i---~~~~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg~~- 201 (568)
T PTZ00420 138 YYIMCSSGFDS-----FVNIWDIENEKR--AFQI---NMPKKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQEI- 201 (568)
T ss_pred CeEEEEEeCCC-----eEEEEECCCCcE--EEEE---ecCCcEEEEEECCCCCEEEEEecCC-----EEEEEECCCCcE-
Confidence 33555666543 488899877641 1111 11111222222 2677777776543 389999987542
Q ss_pred EeccCCCCCCCCCCCcEEEEE-eeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 339 VAITSPSSSVTSNKGFTLVLV-QHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 339 ~~~~~p~~~~~~r~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
+...... ........+.. ........++.+|.++.....|.+||+..
T Consensus 202 -i~tl~gH--~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 202 -ASSFHIH--DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred -EEEEecc--cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 2221111 01000111111 11112335566666554444688888774
No 178
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=34.46 E-value=5.5e+02 Score=26.67 Aligned_cols=120 Identities=12% Similarity=0.151 Sum_probs=62.3
Q ss_pred ceEEEEEC-CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEE-ECCcEEEEEcCCCCCCCCCcE
Q 009910 200 GHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDL 277 (522)
Q Consensus 200 ~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~v 277 (522)
.++++... +-|+..|-.+ ..+-+||+++.. .+. .+|.--.--.+.. -+++ .|+.=+.+.. .|
T Consensus 350 ~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a---~Fpght~~vk~i~FsENG-Y~Lat~add~----~V 413 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVA---KFPGHTGPVKAISFSENG-YWLATAADDG----SV 413 (506)
T ss_pred eEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccc---cCCCCCCceeEEEeccCc-eEEEEEecCC----eE
Confidence 44455544 4444443222 347889998876 443 4443222222223 3555 4444333322 38
Q ss_pred EEEEcCCCc-EEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCC
Q 009910 278 YSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 345 (522)
Q Consensus 278 ~~yd~~~~~-W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 345 (522)
..||+.... ...+.. +... ......+ .++..+++|.+- .||.|+-.+..|+.+...+.
T Consensus 414 ~lwDLRKl~n~kt~~l----~~~~-~v~s~~fD~SGt~L~~~g~~l-----~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQL----DEKK-EVNSLSFDQSGTYLGIAGSDL-----QVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred EEEEehhhcccceeec----cccc-cceeEEEcCCCCeEEeeccee-----EEEEEecccccceeeehhhh
Confidence 888886543 222211 1111 2233333 456667776443 37888888999999886544
No 179
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=32.00 E-value=5.8e+02 Score=26.21 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=49.9
Q ss_pred cEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceE
Q 009910 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (522)
Q Consensus 225 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~ 304 (522)
.+|..|.......++.. ..+....+|---..++..|+..+... ...-.-+..||+++..=+.+..+ +++.|-
T Consensus 217 RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~-~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~ 288 (386)
T PF14583_consen 217 RIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTP-GGQDFWIAGYDPDTGERRRLMEM-----PWCSHF 288 (386)
T ss_dssp SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEET-TT--EEEEEE-TTT--EEEEEEE------SEEEE
T ss_pred EEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEEEeecC-CCCceEEEeeCCCCCCceEEEeC-----Cceeee
Confidence 56666665544444431 23333444444445566343333222 12223488889988754445433 346677
Q ss_pred EEEECCEEEEEcccCCCC---------CcC--eEEEEECCCCceEEecc
Q 009910 305 GVLCGTKWYIAGGGSRKK---------RHA--ETLIFDILKGEWSVAIT 342 (522)
Q Consensus 305 ~~~~~~~iyi~GG~~~~~---------~~~--~v~~yd~~~~~W~~~~~ 342 (522)
++..++++++--|.+... ..+ -+++++++...-..+..
T Consensus 289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~ 337 (386)
T PF14583_consen 289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR 337 (386)
T ss_dssp EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE
T ss_pred EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee
Confidence 777788888876764211 112 35567887766555443
No 180
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.19 E-value=4.1e+02 Score=29.42 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=49.2
Q ss_pred CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE
Q 009910 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (522)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 287 (522)
|.-|++.|... ..+.++|..+..=.++= +| .-+.-.+.+....++.++.|+.++ .|..||+.+..-
T Consensus 546 Ns~Y~aTGSsD-----~tVRlWDv~~G~~VRiF-~G---H~~~V~al~~Sp~Gr~LaSg~ed~-----~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 546 NSNYVATGSSD-----RTVRLWDVSTGNSVRIF-TG---HKGPVTALAFSPCGRYLASGDEDG-----LIKIWDLANGSL 611 (707)
T ss_pred cccccccCCCC-----ceEEEEEcCCCcEEEEe-cC---CCCceEEEEEcCCCceEeecccCC-----cEEEEEcCCCcc
Confidence 55566655221 23555566555443331 01 112222333444443555555443 488888766421
Q ss_pred EEeeeCCCCCCCccceEE-EEECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 288 TRIKIRGFHPSPRAGCCG-VLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 288 ~~~~~~~~~p~~r~~~~~-~~~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
+..+- -..-...+. ...++.+++.||.+.. |..+|...
T Consensus 612 --v~~l~--~Ht~ti~SlsFS~dg~vLasgg~Dns-----V~lWD~~~ 650 (707)
T KOG0263|consen 612 --VKQLK--GHTGTIYSLSFSRDGNVLASGGADNS-----VRLWDLTK 650 (707)
T ss_pred --hhhhh--cccCceeEEEEecCCCEEEecCCCCe-----EEEEEchh
Confidence 11110 000111121 2248899999998755 66666543
No 181
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=31.06 E-value=5.6e+02 Score=25.75 Aligned_cols=152 Identities=13% Similarity=0.217 Sum_probs=80.2
Q ss_pred cCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCC---
Q 009910 223 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP--- 299 (522)
Q Consensus 223 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~--- 299 (522)
.+.+..|+++.+.-+.....--.|..--.|-+---+++..|++.--++. =++|.||......+++.....+|..
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st---V~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST---VDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE---EEEEEEcCCCceEEEeeeeccCccccCC
Confidence 4678899988776665543212222223354544566778888654332 3578888877888888775444432
Q ss_pred ccceEEEEE--CCE-EEEEcccCCCCCcCeEEE--EECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCC
Q 009910 300 RAGCCGVLC--GTK-WYIAGGGSRKKRHAETLI--FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 300 r~~~~~~~~--~~~-iyi~GG~~~~~~~~~v~~--yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
-.+.+++.+ +++ ||+. -+ ..+.|.+ .|+.+++-+.+...+.....+| .|.. .. +.+.|++.+-.
T Consensus 243 ~~~~aaIhis~dGrFLYas-NR----g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR-~F~i---~~-~g~~Liaa~q~- 311 (346)
T COG2706 243 TNWAAAIHISPDGRFLYAS-NR----GHDSIAVFSVDPDGGKLELVGITPTEGQFPR-DFNI---NP-SGRFLIAANQK- 311 (346)
T ss_pred CCceeEEEECCCCCEEEEe-cC----CCCeEEEEEEcCCCCEEEEEEEeccCCcCCc-ccee---CC-CCCEEEEEccC-
Confidence 223344333 444 5543 22 2234554 4666666665555444333344 2322 22 22455544433
Q ss_pred CCCCCcEEEEEcccCCc
Q 009910 375 KEPSNQVEVLSIEKNES 391 (522)
Q Consensus 375 ~~~~~~v~~y~~~~~~w 391 (522)
++.+.+|.++..+-
T Consensus 312 ---sd~i~vf~~d~~TG 325 (346)
T COG2706 312 ---SDNITVFERDKETG 325 (346)
T ss_pred ---CCcEEEEEEcCCCc
Confidence 23467776655543
No 182
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=30.31 E-value=1.3e+02 Score=19.28 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=15.3
Q ss_pred EEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 304 CGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 304 ~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
+.++.++.+|+.+. + ..++++|+++
T Consensus 16 ~~~v~~g~vyv~~~-d-----g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-D-----GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T-T-----SEEEEEETT-
T ss_pred CCEEECCEEEEEcC-C-----CEEEEEeCCC
Confidence 34556888887665 2 4599999864
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=29.62 E-value=4.6e+02 Score=26.56 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=54.8
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEE-EeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
...|.++=+.... +.+-+++.+..+=- ++ ..|.+. -++..+.++++|. ...++|+||++++
T Consensus 55 SSSLvaiV~~~qp----r~Lkv~~~Kk~~~ICe~----~fpt~I---L~VrmNr~RLvV~-------Lee~IyIydI~~M 116 (391)
T KOG2110|consen 55 SSSLVAIVSIKQP----RKLKVVHFKKKTTICEI----FFPTSI---LAVRMNRKRLVVC-------LEESIYIYDIKDM 116 (391)
T ss_pred ccceeEEEecCCC----ceEEEEEcccCceEEEE----ecCCce---EEEEEccceEEEE-------EcccEEEEecccc
Confidence 4455665555222 56777887655321 22 334332 2344555555553 1346999999876
Q ss_pred cE-EEeeeCCCCCCCccceEEEEEC-CEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 286 IW-TRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 286 ~W-~~~~~~~~~p~~r~~~~~~~~~-~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
.- ..+... +|.++.-++..... +....+-|. ....+|++||..+-+
T Consensus 117 klLhTI~t~--~~n~~gl~AlS~n~~n~ylAyp~s---~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 117 KLLHTIETT--PPNPKGLCALSPNNANCYLAYPGS---TTSGDVVLFDTINLQ 164 (391)
T ss_pred eeehhhhcc--CCCccceEeeccCCCCceEEecCC---CCCceEEEEEcccce
Confidence 42 222222 24444433333333 333334332 235789999987644
No 184
>PRK10115 protease 2; Provisional
Probab=29.46 E-value=8.4e+02 Score=27.28 Aligned_cols=168 Identities=8% Similarity=0.004 Sum_probs=85.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
+++.++++ .+..+....++++.|+.++... +. .++..+ ..++.. ++.-+++.-.........++|++++.+.
T Consensus 137 dg~~la~~-~d~~G~E~~~l~v~d~~tg~~l--~~--~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 137 DNTIMALA-EDFLSRRQYGIRFRNLETGNWY--PE--LLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred CCCEEEEE-ecCCCcEEEEEEEEECCCCCCC--Cc--cccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 56666665 4445566778999999887421 10 122222 334433 4443444443322123478999999987
Q ss_pred cE--EEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEc--CCCcEEEeeeCCCCCCCccceEEEEEC
Q 009910 235 TW--LPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF--ETMIWTRIKIRGFHPSPRAGCCGVLCG 309 (522)
Q Consensus 235 ~W--~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~p~~r~~~~~~~~~ 309 (522)
.- ..+- ..+........... +++.+ ++...+. ..+.++.|+. .+..|..+... +.. ........+
T Consensus 210 ~~~d~lv~---~e~~~~~~~~~~~s~d~~~l-~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~ 279 (686)
T PRK10115 210 ASQDELVY---EEKDDTFYVSLHKTTSKHYV-VIHLASA--TTSEVLLLDAELADAEPFVFLPR---RKD-HEYSLDHYQ 279 (686)
T ss_pred hhHCeEEE---eeCCCCEEEEEEEcCCCCEE-EEEEECC--ccccEEEEECcCCCCCceEEEEC---CCC-CEEEEEeCC
Confidence 32 2232 11112222233333 45533 3443322 2356888883 33444433332 111 112233346
Q ss_pred CEEEEEcccCCCCCcCeEEEEECC-CCceEEecc
Q 009910 310 TKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAIT 342 (522)
Q Consensus 310 ~~iyi~GG~~~~~~~~~v~~yd~~-~~~W~~~~~ 342 (522)
+.+|+.--.. .....+...++. ..+|+.+.+
T Consensus 280 ~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~ 311 (686)
T PRK10115 280 HRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIP 311 (686)
T ss_pred CEEEEEEcCC--CCCceEEEecCCCcccCeEEEC
Confidence 7888875432 223457777776 578988774
No 185
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.85 E-value=9e+02 Score=27.11 Aligned_cols=100 Identities=22% Similarity=0.271 Sum_probs=50.6
Q ss_pred EEEEcCCCcEEEcccccccCCCCCCCCCCCccce-----EEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec
Q 009910 117 QVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH-----SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (522)
Q Consensus 117 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (522)
..+.-++..|..++......|.+....--.+.+| +++..++.+.++-|.++ ++-.++..+.+-..-
T Consensus 339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~------SikiWn~~t~kciRT--- 409 (888)
T KOG0306|consen 339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGE------SIKIWNRDTLKCIRT--- 409 (888)
T ss_pred EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCC------cEEEEEccCcceeEE---
Confidence 3344445578877774333222111000011122 45555666666655332 366777776553321
Q ss_pred CCCCCCCcceEEEEEC-CEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 192 GDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 192 ~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.. +-+++..+. ++.++.|+.++ .+.+||+.+.
T Consensus 410 --i~~~-y~l~~~Fvpgd~~Iv~G~k~G------el~vfdlaS~ 444 (888)
T KOG0306|consen 410 --ITCG-YILASKFVPGDRYIVLGTKNG------ELQVFDLASA 444 (888)
T ss_pred --eccc-cEEEEEecCCCceEEEeccCC------ceEEEEeehh
Confidence 3333 566666665 55566665443 4788888654
No 186
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.59 E-value=4.9e+02 Score=24.93 Aligned_cols=104 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred EEEcccCCCCCCceeEEEEECCCCcE-------------EEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcE
Q 009910 160 LLVGGKTDSGSDRVSVWTFDTETECW-------------SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (522)
Q Consensus 160 yv~GG~~~~~~~~~~v~~yd~~t~~W-------------~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 226 (522)
++.||++ .+-.+|.||-. +| +.++-.+..-.+++.-+.+..+++++|
T Consensus 178 lvSgGcD----n~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI-------------- 237 (299)
T KOG1332|consen 178 LVSGGCD----NLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII-------------- 237 (299)
T ss_pred eeccCCc----cceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE--------------
Q ss_pred EEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC-cEEEee
Q 009910 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIK 291 (522)
Q Consensus 227 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~ 291 (522)
|.-+.+...|+..... ++|.+.+..+=...++- |-|-||. |.+.++....+ +|.++.
T Consensus 238 wt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~-LaVs~Gd------Nkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNI-LAVSGGD------NKVTLWKENVDGKWEEVG 295 (299)
T ss_pred EEecCccCcccccccc-cCCcceEEEEEeccccE-EEEecCC------cEEEEEEeCCCCcEEEcc
No 187
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=25.53 E-value=4.6e+02 Score=22.93 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=37.6
Q ss_pred cEEEEEcCCCcE-EEeeeCCCCCCCcc----ceEE-EEECCEEEEEcccCCCCCcCeEEEEEC---CCCceEEeccCC
Q 009910 276 DLYSLDFETMIW-TRIKIRGFHPSPRA----GCCG-VLCGTKWYIAGGGSRKKRHAETLIFDI---LKGEWSVAITSP 344 (522)
Q Consensus 276 ~v~~yd~~~~~W-~~~~~~~~~p~~r~----~~~~-~~~~~~iyi~GG~~~~~~~~~v~~yd~---~~~~W~~~~~~p 344 (522)
-|..||+.+.+. ..++. |.... .... ++.+++|-++--. .....-+||+.+- ....|+++-..+
T Consensus 22 ~IlsFDl~~E~F~~~~~l----P~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~IWvm~~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 22 FILSFDLSTEKFGRSLPL----PFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIEIWVMKKYGYGKESWTKLFTID 94 (164)
T ss_pred EEEEEeccccccCCEECC----CCccCccCCEEEEEEecCCEEEEEEec-cCCccEEEEEEeeeccCcceEEEEEEEe
Confidence 599999999999 44432 22211 2222 2226778777321 2222367888762 367899976544
No 188
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=25.22 E-value=7.3e+02 Score=25.16 Aligned_cols=145 Identities=12% Similarity=0.238 Sum_probs=75.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc--eEEEEECCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
++.+.+.||.++ ..+.++..++.|--. ++.-.-. .+....++.+++-|+..+. +.+|...+
T Consensus 75 ~~~l~aTGGgDD------~AflW~~~~ge~~~e-----ltgHKDSVt~~~FshdgtlLATGdmsG~------v~v~~~st 137 (399)
T KOG0296|consen 75 NNNLVATGGGDD------LAFLWDISTGEFAGE-----LTGHKDSVTCCSFSHDGTLLATGDMSGK------VLVFKVST 137 (399)
T ss_pred CCceEEecCCCc------eEEEEEccCCcceeE-----ecCCCCceEEEEEccCceEEEecCCCcc------EEEEEccc
Confidence 678888898764 266778888876432 2221222 2233457888888887654 55555544
Q ss_pred --CcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCE
Q 009910 234 --LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (522)
Q Consensus 234 --~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 311 (522)
.+|.....-..+-- +..+.-..++++|-.++ .+|.|.+....-.++-. | +..+..++-..-+++
T Consensus 138 g~~~~~~~~e~~dieW------l~WHp~a~illAG~~DG-----svWmw~ip~~~~~kv~~-G--h~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEW------LKWHPRAHILLAGSTDG-----SVWMWQIPSQALCKVMS-G--HNSPCTCGEFIPDGK 203 (399)
T ss_pred CceEEEeecccCceEE------EEecccccEEEeecCCC-----cEEEEECCCcceeeEec-C--CCCCcccccccCCCc
Confidence 34554311111100 11112223677775544 48999887753222221 1 222333333333556
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCc
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
-.+.|=.+ ..+.++|+.+..
T Consensus 204 r~~tgy~d-----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 204 RILTGYDD-----GTIIVWNPKTGQ 223 (399)
T ss_pred eEEEEecC-----ceEEEEecCCCc
Confidence 55554332 237888888764
No 189
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=24.42 E-value=8.9e+02 Score=25.88 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCC
Q 009910 144 IPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGK 219 (522)
Q Consensus 144 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 219 (522)
.+..+..+++++ ++...++||.+.. +++|.+....-.+... ....|..-+.+.+ ++..++.|
T Consensus 440 ~~~~y~~s~vAv~~~~~~vaVGG~Dgk------vhvysl~g~~l~ee~~---~~~h~a~iT~vaySpd~~yla~~----- 505 (603)
T KOG0318|consen 440 IPIGYESSAVAVSPDGSEVAVGGQDGK------VHVYSLSGDELKEEAK---LLEHRAAITDVAYSPDGAYLAAG----- 505 (603)
T ss_pred eccccccceEEEcCCCCEEEEecccce------EEEEEecCCcccceee---eecccCCceEEEECCCCcEEEEe-----
Q ss_pred CCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCC
Q 009910 220 RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299 (522)
Q Consensus 220 ~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~ 299 (522)
.....+-.||..++.=..-.- ....+|....+-.-++. ++.-|+.+.. +++|+.+.-.=. +...+..+..
T Consensus 506 -Da~rkvv~yd~~s~~~~~~~w--~FHtakI~~~aWsP~n~-~vATGSlDt~-----Viiysv~kP~~~-i~iknAH~~g 575 (603)
T KOG0318|consen 506 -DASRKVVLYDVASREVKTNRW--AFHTAKINCVAWSPNNK-LVATGSLDTN-----VIIYSVKKPAKH-IIIKNAHLGG 575 (603)
T ss_pred -ccCCcEEEEEcccCceeccee--eeeeeeEEEEEeCCCce-EEEeccccce-----EEEEEccChhhh-eEeccccccC
Q ss_pred ccceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 009910 300 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 300 r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
-...+.+++.-++--|.+.. |-+++..
T Consensus 576 --Vn~v~wlde~tvvSsG~Da~-----iK~W~v~ 602 (603)
T KOG0318|consen 576 --VNSVAWLDESTVVSSGQDAN-----IKVWNVT 602 (603)
T ss_pred --ceeEEEecCceEEeccCcce-----eEEeccc
No 190
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=24.33 E-value=2.6e+02 Score=27.13 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=37.5
Q ss_pred EECCEEEEEcccCCCCC-ccCcEEEEEcC-CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCC
Q 009910 205 RASSVLILFGGEDGKRR-KLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 268 (522)
Q Consensus 205 ~~~~~iyv~GG~~~~~~-~~~~v~~yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~ 268 (522)
.++++.+++|-...... ..+.+..|.-. .++|+.++. .+-......-.+.+++. +||||.
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~--~~~~~LqDPF~t~I~ge--lifGGv 95 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEG--APVFQLQDPFVTRIQGE--LIFGGV 95 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT-----BS-EEEEEEEETTE--EEEEEE
T ss_pred eECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCC--cceEEecCcceeeECCE--EEEeeE
Confidence 46889999887655444 45667777666 789999972 33344556677888888 678885
No 191
>PRK01029 tolB translocation protein TolB; Provisional
Probab=23.97 E-value=8.3e+02 Score=25.37 Aligned_cols=212 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCC
Q 009910 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 194 (522)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 194 (522)
.+|++++.+.+-+.+... .......+....+.+|.+..-..+..... +..|+..+...........-
T Consensus 212 ~I~~~~l~~g~~~~lt~~-----------~g~~~~p~wSPDG~~Laf~s~~~g~~di~--~~~~~~~~g~~g~~~~lt~~ 278 (428)
T PRK01029 212 KIFLGSLENPAGKKILAL-----------QGNQLMPTFSPRKKLLAFISDRYGNPDLF--IQSFSLETGAIGKPRRLLNE 278 (428)
T ss_pred eEEEEECCCCCceEeecC-----------CCCccceEECCCCCEEEEEECCCCCccee--EEEeecccCCCCcceEeecC
Q ss_pred CCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcC-CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCC
Q 009910 195 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (522)
Q Consensus 195 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~ 273 (522)
...........-+++-++|...... ...+|+++.. ...-...- .............-+++.|++.....+
T Consensus 279 ~~~~~~~p~wSPDG~~Laf~s~~~g---~~~ly~~~~~~~g~~~~~l---t~~~~~~~~p~wSPDG~~Laf~~~~~g--- 349 (428)
T PRK01029 279 AFGTQGNPSFSPDGTRLVFVSNKDG---RPRIYIMQIDPEGQSPRLL---TKKYRNSSCPAWSPDGKKIAFCSVIKG--- 349 (428)
T ss_pred CCCCcCCeEECCCCCEEEEEECCCC---CceEEEEECcccccceEEe---ccCCCCccceeECCCCCEEEEEEcCCC---
Q ss_pred CCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCC
Q 009910 274 LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKG 353 (522)
Q Consensus 274 ~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~ 353 (522)
..++++||+++++.+.+... +..-....-.--+..|++.....+. .+++.+|+.+.+.+.+.........+..+
T Consensus 350 ~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~~~~g~---~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 350 VRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSAGNSNE---SELYLISLITKKTRKIVIGSGEKRFPSWG 423 (428)
T ss_pred CcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEEEeecCCCcccCceec
Q ss_pred c
Q 009910 354 F 354 (522)
Q Consensus 354 ~ 354 (522)
.
T Consensus 424 ~ 424 (428)
T PRK01029 424 A 424 (428)
T ss_pred C
No 192
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.50 E-value=8.5e+02 Score=25.33 Aligned_cols=94 Identities=26% Similarity=0.238 Sum_probs=47.4
Q ss_pred EEEEECCCC---cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc
Q 009910 175 VWTFDTETE---CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 175 v~~yd~~t~---~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 251 (522)
|+-||.... .|+..+- -.+.++-+.-...-.+.+-+|.+. .-.+|.|+..+.+-.... .+-..|..
T Consensus 354 v~~~D~R~~~~~vwt~~AH----d~~ISgl~~n~~~p~~l~t~s~d~----~Vklw~~~~~~~~~v~~~---~~~~~rl~ 422 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAH----DDEISGLSVNIQTPGLLSTASTDK----VVKLWKFDVDSPKSVKEH---SFKLGRLH 422 (463)
T ss_pred EEeeecCCCCCceeEEEec----cCCcceEEecCCCCcceeeccccc----eEEEEeecCCCCcccccc---ccccccee
Confidence 777777654 4776652 122233222222223444444322 345777776665544443 55566633
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 284 (522)
+.+.-.....+|++||... -+.++|..+
T Consensus 423 c~~~~~~~a~~la~GG~k~-----~~~vwd~~~ 450 (463)
T KOG0270|consen 423 CFALDPDVAFTLAFGGEKA-----VLRVWDIFT 450 (463)
T ss_pred ecccCCCcceEEEecCccc-----eEEEeeccc
Confidence 3333333446899999754 245555433
No 193
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=22.90 E-value=9.8e+02 Score=26.74 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 348 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 348 ~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
..+|.|+-++.+..+++ -+.-|-..+ .+-+|++..-+
T Consensus 456 ~d~r~G~R~~~vSp~gq--hLAsGDr~G----nlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQ--HLASGDRGG----NLRVYDLQELE 492 (1080)
T ss_pred cCcccceEEEEECCCcc--eecccCccC----ceEEEEehhhh
Confidence 47888999998886554 444444433 47777776554
No 194
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=22.28 E-value=68 Score=20.62 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.4
Q ss_pred hHHHHHHHhhhcc
Q 009910 506 YLVLQAYINFMSQ 518 (522)
Q Consensus 506 ~~~~~~~~~~~~~ 518 (522)
|..|+.|||.+..
T Consensus 21 ~~~L~~YinlitR 33 (36)
T cd00126 21 LAALREYINLITR 33 (36)
T ss_pred HHHHHHHHHHHcc
Confidence 4579999999864
No 195
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=21.91 E-value=3.4e+02 Score=28.38 Aligned_cols=61 Identities=18% Similarity=0.056 Sum_probs=34.5
Q ss_pred EEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 262 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
-++-.|++. .+-.+|.++++-..--..+..|..-..|. -+..++++||.+.. |..+|+.++
T Consensus 272 ~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~~cvkf~p---d~~n~fl~G~sd~k-----i~~wDiRs~ 332 (503)
T KOG0282|consen 272 SFLSASFDR-----FLKLWDTETGQVLSRFHLDKVPTCVKFHP---DNQNIFLVGGSDKK-----IRQWDIRSG 332 (503)
T ss_pred eeeeeecce-----eeeeeccccceEEEEEecCCCceeeecCC---CCCcEEEEecCCCc-----EEEEeccch
Confidence 455555543 37788999887665444433332111111 13489999998764 555555543
No 196
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.75 E-value=3.2e+02 Score=29.74 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=39.7
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccC---CC-CCC-CCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 009910 309 GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS---PS-SSV-TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (522)
Q Consensus 309 ~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~-~~~-~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (522)
++.+++-||.+.. |+.+|+.+.+=+.+... +. ..+ .++. +.-.+..++.+.+++-||..+ ++-+
T Consensus 129 ~~~lvaSgGLD~~-----IflWDin~~~~~l~~s~n~~t~~sl~sG~k~--siYSLA~N~t~t~ivsGgtek----~lr~ 197 (735)
T KOG0308|consen 129 NNELVASGGLDRK-----IFLWDINTGTATLVASFNNVTVNSLGSGPKD--SIYSLAMNQTGTIIVSGGTEK----DLRL 197 (735)
T ss_pred CceeEEecCCCcc-----EEEEEccCcchhhhhhccccccccCCCCCcc--ceeeeecCCcceEEEecCccc----ceEE
Confidence 7789999998866 88888876532221110 10 111 1111 222222234567888888753 5777
Q ss_pred EEcccCC
Q 009910 384 LSIEKNE 390 (522)
Q Consensus 384 y~~~~~~ 390 (522)
||+.+.+
T Consensus 198 wDprt~~ 204 (735)
T KOG0308|consen 198 WDPRTCK 204 (735)
T ss_pred ecccccc
Confidence 7777665
No 197
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=21.53 E-value=7.6e+02 Score=24.07 Aligned_cols=82 Identities=9% Similarity=0.096 Sum_probs=48.0
Q ss_pred CCEEEEEc-ccCCC------CCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCc----cEEEEEcCCCCCC
Q 009910 309 GTKWYIAG-GGSRK------KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK----DFLVAFGGIKKEP 377 (522)
Q Consensus 309 ~~~iyi~G-G~~~~------~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~----~~l~v~GG~~~~~ 377 (522)
.++|+|+- |.-.. ..-.++..||+.+++-.+.-..|.....+...+.-.++..... .++||.=-.
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~---- 86 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG---- 86 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC----
Confidence 56788774 32111 2346899999999986555555555444556666666665322 567764322
Q ss_pred CCcEEEEEcccCC-cccc
Q 009910 378 SNQVEVLSIEKNE-SSMG 394 (522)
Q Consensus 378 ~~~v~~y~~~~~~-w~~~ 394 (522)
...+.+||+.+++ |..+
T Consensus 87 ~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 87 GPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp TCEEEEEETTTTEEEEEE
T ss_pred cCcEEEEEccCCcEEEEe
Confidence 2279999999875 5444
No 198
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.51 E-value=8.5e+02 Score=24.58 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=62.2
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCC---CCCCcee
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTD---SGSDRVS 174 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~---~~~~~~~ 174 (522)
.++||.--..... ...++++|.++.+-.-.-+. +..++.+..- ++.+|+..-+.. .+...+-
T Consensus 3 ~rvyV~D~~~~~~-~~rv~viD~d~~k~lGmi~~-------------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFFHM-TSRVYVIDADSGKLLGMIDT-------------GFLGNVALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGGGS-SEEEEEEETTTTEEEEEEEE-------------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCccccc-cceEEEEECCCCcEEEEeec-------------ccCCceeECCCCCEEEEEEEEEeccccccceeE
Confidence 4567764422222 35788999888764333221 1122322222 467777654432 2334566
Q ss_pred EEEEECCCCc--EEEeeecCCCCCC-Ccce------EEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEE
Q 009910 175 VWTFDTETEC--WSVVEAKGDIPVA-RSGH------TVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (522)
Q Consensus 175 v~~yd~~t~~--W~~~~~~~~~p~~-r~~~------~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 238 (522)
|..||+.|.+ ++.. +|.. |... .... .+..+||+ +-.+..+|-+.|++.++...
T Consensus 69 v~~~D~~TL~~~~EI~-----iP~k~R~~~~~~~~~~~ls~dgk~~~V~-----N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIE-----IPPKPRAQVVPYKNMFALSADGKFLYVQ-----NFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEETTTTEEEEEEE-----ETTS-B--BS--GGGEEE-TTSSEEEEE-----EESSSEEEEEEETTTTEEEE
T ss_pred EEEEecCcCcccceEe-----cCCcchheecccccceEEccCCcEEEEE-----ccCCCCeEEEEECCCCceee
Confidence 9999999985 4433 3332 4321 1222 23466665 22466789999999987654
No 199
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=21.43 E-value=9.5e+02 Score=25.14 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=52.7
Q ss_pred cEEEEEcCCC-cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccce
Q 009910 225 DLHMFDLKSL-TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (522)
Q Consensus 225 ~v~~yd~~t~-~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~ 303 (522)
.+.++|.+.+ .-.+.- . ..+... ++++......+++.|+.++ .+.++|+++.+-...-. .-....
T Consensus 226 tiriwd~~~~~~~~~~l-~-gH~~~v--~~~~f~p~g~~i~Sgs~D~-----tvriWd~~~~~~~~~l~-----~hs~~i 291 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTL-K-GHSTYV--TSVAFSPDGNLLVSGSDDG-----TVRIWDVRTGECVRKLK-----GHSDGI 291 (456)
T ss_pred eEEEeeccCCCeEEEEe-c-CCCCce--EEEEecCCCCEEEEecCCC-----cEEEEeccCCeEEEeee-----ccCCce
Confidence 4788888444 322221 0 222222 4444444445888888765 48999998854433322 112222
Q ss_pred EEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 304 CGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 304 ~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
+++.. ++.+++.+..++. +.+||+.+..
T Consensus 292 s~~~f~~d~~~l~s~s~d~~-----i~vwd~~~~~ 321 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGT-----IRVWDLETGS 321 (456)
T ss_pred EEEEECCCCCEEEEcCCCcc-----EEEEECCCCc
Confidence 33333 6778888765543 8899998876
No 200
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.96 E-value=6.3e+02 Score=26.90 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=48.8
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 009910 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (522)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~ 247 (522)
++..++.++.+|+.++.=-.-++ . ....+..+...++.+.+++|+.+++ .-.+-..|+.+..-..-. ..
T Consensus 370 ~~~~ls~LvllD~~tg~~l~~S~---~-~~Ir~r~~~~~~~~~vaI~g~~G~~--~ikLvlid~~tLev~kes---~~-- 438 (489)
T PF05262_consen 370 PNHYLSELVLLDSDTGDTLKRSP---V-NGIRGRTFYEREDDLVAIAGCSGNA--AIKLVLIDPETLEVKKES---ED-- 438 (489)
T ss_pred CCCcceeEEEEeCCCCceecccc---c-ceeccceeEEcCCCEEEEeccCCch--heEEEecCcccceeeeec---cc--
Confidence 44567789999999986433332 2 2223345556788899999995442 233444566665544432 22
Q ss_pred CCcceEEEEECCcEEEEE
Q 009910 248 PRSNHVAALYDDKNLLIF 265 (522)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~ 265 (522)
..+..+....++..+|++
T Consensus 439 ~i~~~S~l~~~~~~iyaV 456 (489)
T PF05262_consen 439 EISWQSSLIVDGQMIYAV 456 (489)
T ss_pred cccccCceEEcCCeEEEE
Confidence 222334445555556643
No 201
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=20.61 E-value=8.3e+02 Score=24.13 Aligned_cols=144 Identities=21% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCEEEEEcccCCCCCccCcEEE-EEcCCCcEEEeecCCCCCCCCcceEEEEEC-----CcEEEEEcCCCCCCCCCcEEEE
Q 009910 207 SSVLILFGGEDGKRRKLNDLHM-FDLKSLTWLPLHCTGTGPSPRSNHVAALYD-----DKNLLIFGGSSKSKTLNDLYSL 280 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-----~~~lyv~GG~~~~~~~~~v~~y 280 (522)
+|..++-||.+.. --+|. |.-..|.|..- +|+.++.+ ++..++--|.+.. +..|
T Consensus 58 ~gs~~aSgG~Dr~----I~LWnv~gdceN~~~lk-----------gHsgAVM~l~~~~d~s~i~S~gtDk~-----v~~w 117 (338)
T KOG0265|consen 58 DGSCFASGGSDRA----IVLWNVYGDCENFWVLK-----------GHSGAVMELHGMRDGSHILSCGTDKT-----VRGW 117 (338)
T ss_pred CCCeEeecCCcce----EEEEeccccccceeeec-----------cccceeEeeeeccCCCEEEEecCCce-----EEEE
Q ss_pred EcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEe
Q 009910 281 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQ 360 (522)
Q Consensus 281 d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~ 360 (522)
|.++++-..--.. -..-.......--+...|.-|.+... +.+||..+..-.+ ....-+-..++.
T Consensus 118 D~~tG~~~rk~k~---h~~~vNs~~p~rrg~~lv~SgsdD~t----~kl~D~R~k~~~~---------t~~~kyqltAv~ 181 (338)
T KOG0265|consen 118 DAETGKRIRKHKG---HTSFVNSLDPSRRGPQLVCSGSDDGT----LKLWDIRKKEAIK---------TFENKYQLTAVG 181 (338)
T ss_pred ecccceeeehhcc---ccceeeecCccccCCeEEEecCCCce----EEEEeecccchhh---------ccccceeEEEEE
Q ss_pred eCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 361 HKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 361 ~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.++...=++.||.++ +|.++|+..++
T Consensus 182 f~d~s~qv~sggIdn----~ikvWd~r~~d 207 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDN----DIKVWDLRKND 207 (338)
T ss_pred ecccccceeeccccC----ceeeeccccCc
Done!