Query 009910
Match_columns 522
No_of_seqs 435 out of 3481
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 15:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 1.8E-45 6E-50 365.0 37.1 292 33-360 7-299 (302)
2 1zgk_A Kelch-like ECH-associat 100.0 1.4E-45 4.9E-50 366.9 35.0 293 29-359 12-308 (308)
3 1zgk_A Kelch-like ECH-associat 100.0 2.2E-45 7.6E-50 365.5 33.0 281 83-394 9-293 (308)
4 3ii7_A Kelch-like protein 7; p 100.0 5.5E-45 1.9E-49 362.1 35.3 282 41-361 11-295 (306)
5 2vpj_A Kelch-like protein 12; 100.0 1.8E-44 6.2E-49 357.4 35.0 285 40-360 13-300 (301)
6 2xn4_A Kelch-like protein 2; s 100.0 4.6E-43 1.6E-47 347.6 37.1 270 93-394 10-282 (302)
7 3ii7_A Kelch-like protein 7; p 100.0 5.9E-43 2E-47 347.5 36.3 263 98-394 11-278 (306)
8 2woz_A Kelch repeat and BTB do 100.0 5.9E-44 2E-48 356.8 29.1 292 33-371 7-314 (318)
9 4asc_A Kelch repeat and BTB do 100.0 3.5E-44 1.2E-48 358.0 25.9 285 41-372 4-305 (315)
10 2vpj_A Kelch-like protein 12; 100.0 1.2E-42 4.1E-47 344.3 33.7 267 97-394 13-284 (301)
11 4asc_A Kelch repeat and BTB do 100.0 3.2E-42 1.1E-46 343.8 27.9 262 98-394 4-283 (315)
12 2uvk_A YJHT; unknown function, 100.0 6.8E-42 2.3E-46 347.3 28.8 281 84-394 5-348 (357)
13 2woz_A Kelch repeat and BTB do 100.0 9.7E-41 3.3E-45 333.5 30.8 271 86-394 6-293 (318)
14 2uvk_A YJHT; unknown function, 100.0 4.6E-40 1.6E-44 333.8 29.2 278 36-343 14-351 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 3.5E-38 1.2E-42 346.5 29.2 283 84-388 384-694 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 2.5E-35 8.6E-40 323.8 26.3 268 40-334 396-694 (695)
17 1k3i_A Galactose oxidase precu 100.0 4E-35 1.4E-39 321.4 20.0 339 16-387 167-548 (656)
18 1k3i_A Galactose oxidase precu 100.0 5.3E-34 1.8E-38 312.4 22.6 313 71-413 173-531 (656)
19 3dsm_A Uncharacterized protein 98.3 0.0009 3.1E-08 65.8 30.0 252 87-390 42-303 (328)
20 3mbr_X Glutamine cyclotransfer 98.0 0.0028 9.5E-08 59.2 25.0 162 148-339 22-184 (243)
21 3dsm_A Uncharacterized protein 97.9 0.02 6.9E-07 55.9 30.7 232 113-391 16-256 (328)
22 3mbr_X Glutamine cyclotransfer 97.8 0.012 4.2E-07 54.8 24.3 166 89-292 21-187 (243)
23 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.039 1.3E-06 54.7 31.5 233 93-390 48-298 (376)
24 3nol_A Glutamine cyclotransfer 97.7 0.0083 2.8E-07 56.5 22.4 195 148-373 44-245 (262)
25 2ovr_B FBW7, F-BOX/WD repeat p 97.7 0.03 1E-06 56.9 28.1 199 153-389 245-443 (445)
26 1l0q_A Surface layer protein; 97.6 0.011 3.9E-07 58.6 23.2 228 99-391 44-278 (391)
27 1l0q_A Surface layer protein; 97.5 0.0089 3.1E-07 59.4 21.0 227 99-390 2-235 (391)
28 3nol_A Glutamine cyclotransfer 97.5 0.02 7E-07 53.8 21.7 190 91-318 45-245 (262)
29 3bws_A Protein LP49; two-domai 97.5 0.024 8.2E-07 57.1 24.3 241 98-391 133-393 (433)
30 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.11 3.7E-06 51.4 30.8 227 90-390 95-339 (376)
31 3bws_A Protein LP49; two-domai 97.4 0.052 1.8E-06 54.6 25.0 235 98-387 180-431 (433)
32 1k8k_C P40, ARP2/3 complex 41 97.3 0.09 3.1E-06 51.3 25.3 199 98-342 63-284 (372)
33 2iwa_A Glutamine cyclotransfer 97.3 0.097 3.3E-06 49.5 23.9 201 91-334 23-237 (266)
34 3nok_A Glutaminyl cyclase; bet 97.3 0.023 7.9E-07 53.5 19.0 161 90-291 56-217 (268)
35 2iwa_A Glutamine cyclotransfer 97.3 0.13 4.5E-06 48.6 26.0 206 150-389 24-238 (266)
36 3jrp_A Fusion protein of prote 97.3 0.054 1.8E-06 52.9 23.0 239 99-393 23-293 (379)
37 1p22_A F-BOX/WD-repeat protein 97.2 0.043 1.5E-06 55.5 22.5 229 95-390 139-367 (435)
38 1gxr_A ESG1, transducin-like e 97.2 0.11 3.9E-06 49.5 24.4 187 156-390 108-298 (337)
39 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.12 4.2E-06 52.2 25.7 227 98-391 168-394 (445)
40 3nok_A Glutaminyl cyclase; bet 97.2 0.02 6.8E-07 54.0 17.6 159 148-339 56-215 (268)
41 1k8k_C P40, ARP2/3 complex 41 97.2 0.1 3.5E-06 50.8 24.0 241 98-394 19-282 (372)
42 1gxr_A ESG1, transducin-like e 97.1 0.056 1.9E-06 51.8 20.8 225 98-386 108-335 (337)
43 4ery_A WD repeat-containing pr 97.1 0.22 7.5E-06 47.4 27.0 232 99-390 35-270 (312)
44 3ow8_A WD repeat-containing pr 97.1 0.2 6.7E-06 48.5 24.4 189 156-390 91-281 (321)
45 3vgz_A Uncharacterized protein 97.0 0.27 9.1E-06 47.4 29.6 243 98-391 52-306 (353)
46 2hqs_A Protein TOLB; TOLB, PAL 97.0 0.11 3.6E-06 52.5 22.3 228 114-391 159-390 (415)
47 3vgz_A Uncharacterized protein 97.0 0.29 1E-05 47.1 27.8 201 99-340 101-309 (353)
48 3v7d_B Cell division control p 96.9 0.41 1.4E-05 48.4 26.9 147 206-391 278-424 (464)
49 3e5z_A Putative gluconolactona 96.9 0.24 8.1E-06 46.9 23.1 255 72-391 16-289 (296)
50 4aez_A CDC20, WD repeat-contai 96.9 0.16 5.5E-06 50.6 22.7 234 98-390 145-382 (401)
51 2ojh_A Uncharacterized protein 96.9 0.041 1.4E-06 51.4 17.2 229 113-391 21-261 (297)
52 2xbg_A YCF48-like protein; pho 96.8 0.45 1.5E-05 46.2 27.4 218 72-342 64-287 (327)
53 2xbg_A YCF48-like protein; pho 96.7 0.46 1.6E-05 46.1 25.7 258 72-394 23-285 (327)
54 1ri6_A Putative isomerase YBHE 96.7 0.25 8.7E-06 47.2 22.1 261 99-412 50-333 (343)
55 1got_B GT-beta; complex (GTP-b 96.7 0.35 1.2E-05 46.9 23.1 234 98-390 66-303 (340)
56 3v9f_A Two-component system se 96.7 0.057 2E-06 59.5 18.8 224 115-389 428-657 (781)
57 1r5m_A SIR4-interacting protei 96.6 0.23 8E-06 49.0 21.7 229 98-390 119-363 (425)
58 3jrp_A Fusion protein of prote 96.6 0.12 4.1E-06 50.4 19.1 201 99-343 69-297 (379)
59 1p22_A F-BOX/WD-repeat protein 96.6 0.18 6.3E-06 50.8 20.8 189 152-390 138-327 (435)
60 3g4e_A Regucalcin; six bladed 96.6 0.21 7E-06 47.7 20.0 236 89-374 13-263 (297)
61 3zwl_B Eukaryotic translation 96.5 0.53 1.8E-05 45.3 22.9 200 98-340 43-255 (369)
62 1kb0_A Quinohemoprotein alcoho 96.5 0.46 1.6E-05 51.4 23.8 132 92-240 71-208 (677)
63 3ow8_A WD repeat-containing pr 96.4 0.7 2.4E-05 44.5 26.0 226 99-386 92-319 (321)
64 4aez_A CDC20, WD repeat-contai 96.4 0.83 2.8E-05 45.3 26.9 223 114-391 113-339 (401)
65 3jro_A Fusion protein of prote 96.4 0.12 4E-06 56.7 19.1 237 99-388 21-285 (753)
66 3mkq_A Coatomer beta'-subunit; 96.4 0.45 1.6E-05 52.0 23.6 231 98-390 24-261 (814)
67 3u4y_A Uncharacterized protein 96.3 0.58 2E-05 44.7 21.8 240 99-390 52-306 (331)
68 3v7d_B Cell division control p 96.3 1 3.5E-05 45.3 27.6 234 95-390 128-383 (464)
69 3u4y_A Uncharacterized protein 96.3 0.5 1.7E-05 45.1 21.2 236 98-391 9-255 (331)
70 2z3z_A Dipeptidyl aminopeptida 96.3 0.6 2.1E-05 50.2 24.0 157 172-341 234-398 (706)
71 1sq9_A Antiviral protein SKI8; 96.3 0.9 3.1E-05 44.5 23.6 204 158-390 82-324 (397)
72 1rwi_B Serine/threonine-protei 96.3 0.56 1.9E-05 43.3 20.8 229 98-390 34-266 (270)
73 4ery_A WD repeat-containing pr 96.3 0.81 2.8E-05 43.3 29.9 192 98-337 76-271 (312)
74 2z2n_A Virginiamycin B lyase; 96.2 0.76 2.6E-05 42.9 25.3 227 98-390 67-297 (299)
75 3fm0_A Protein CIAO1; WDR39,SG 96.2 0.99 3.4E-05 43.8 23.2 190 98-332 27-223 (345)
76 1r5m_A SIR4-interacting protei 96.2 0.25 8.7E-06 48.8 18.7 145 157-336 217-363 (425)
77 1jmx_B Amine dehydrogenase; ox 96.2 0.56 1.9E-05 44.9 20.7 159 98-289 10-180 (349)
78 1sq9_A Antiviral protein SKI8; 96.2 0.28 9.5E-06 48.3 18.8 115 207-338 197-326 (397)
79 2xdw_A Prolyl endopeptidase; a 96.2 1.2 4.1E-05 48.2 25.3 215 98-341 135-376 (710)
80 1kb0_A Quinohemoprotein alcoho 96.1 1.2 4.1E-05 48.1 24.9 124 152-291 73-208 (677)
81 2hqs_A Protein TOLB; TOLB, PAL 96.1 0.19 6.6E-06 50.6 17.5 186 114-341 203-394 (415)
82 3mkq_A Coatomer beta'-subunit; 96.1 0.89 3E-05 49.6 24.1 190 98-338 66-263 (814)
83 2ecf_A Dipeptidyl peptidase IV 96.1 0.37 1.3E-05 52.2 20.9 110 225-341 264-375 (741)
84 2dg1_A DRP35, lactonase; beta 96.1 0.41 1.4E-05 46.0 19.0 207 98-340 55-269 (333)
85 3v9f_A Two-component system se 96.1 0.45 1.5E-05 52.2 21.5 227 114-391 383-614 (781)
86 3vl1_A 26S proteasome regulato 96.1 0.63 2.1E-05 46.1 20.9 192 156-390 108-324 (420)
87 4gqb_B Methylosome protein 50; 96.1 0.6 2.1E-05 45.6 20.3 189 156-389 138-332 (344)
88 2ghs_A AGR_C_1268P; regucalcin 96.0 1.2 4E-05 43.0 22.1 223 99-373 61-292 (326)
89 4a2l_A BT_4663, two-component 96.0 0.42 1.4E-05 52.6 21.0 225 115-390 428-661 (795)
90 3ei3_B DNA damage-binding prot 96.0 0.91 3.1E-05 44.4 21.4 145 99-285 131-283 (383)
91 1got_B GT-beta; complex (GTP-b 95.9 1.3 4.4E-05 42.8 23.8 136 174-336 165-303 (340)
92 3hfq_A Uncharacterized protein 95.9 0.58 2E-05 45.2 19.6 236 115-388 19-271 (347)
93 3pe7_A Oligogalacturonate lyas 95.9 0.42 1.4E-05 46.9 18.6 209 172-391 167-387 (388)
94 1pjx_A Dfpase, DIISOPROPYLFLUO 95.9 1.2 4.1E-05 42.0 23.9 250 98-390 28-301 (314)
95 3odt_A Protein DOA1; ubiquitin 95.9 1.2 4E-05 41.8 21.3 148 207-394 154-302 (313)
96 2ojh_A Uncharacterized protein 95.9 0.55 1.9E-05 43.4 18.4 202 98-341 52-265 (297)
97 3k26_A Polycomb protein EED; W 95.8 0.89 3.1E-05 43.7 20.5 105 99-234 85-193 (366)
98 3dwl_C Actin-related protein 2 95.8 0.18 6.3E-06 49.3 15.4 241 98-393 22-286 (377)
99 4g56_B MGC81050 protein; prote 95.8 0.59 2E-05 45.8 19.0 188 156-389 150-344 (357)
100 4gqb_B Methylosome protein 50; 95.7 0.44 1.5E-05 46.6 17.8 195 156-390 92-291 (344)
101 2z3z_A Dipeptidyl aminopeptida 95.7 1.2 4E-05 48.0 22.8 154 223-391 234-394 (706)
102 3fm0_A Protein CIAO1; WDR39,SG 95.7 0.68 2.3E-05 45.0 19.1 193 156-387 27-224 (345)
103 1yiq_A Quinohemoprotein alcoho 95.7 2.9 0.0001 45.1 26.9 131 92-239 64-200 (689)
104 4g56_B MGC81050 protein; prote 95.7 0.32 1.1E-05 47.8 16.6 150 207-390 150-303 (357)
105 1q7f_A NHL, brain tumor CG1071 95.7 1.4 4.7E-05 41.1 26.0 237 98-388 40-280 (286)
106 2hes_X YDR267CP; beta-propelle 95.6 1.6 5.5E-05 41.9 21.4 199 156-388 118-328 (330)
107 3scy_A Hypothetical bacterial 95.6 1.7 6E-05 42.0 24.2 249 101-387 15-290 (361)
108 3vl1_A 26S proteasome regulato 95.6 2 6.7E-05 42.4 28.5 105 207-334 258-365 (420)
109 4a11_B DNA excision repair pro 95.6 0.95 3.3E-05 44.2 19.8 104 156-285 111-219 (408)
110 2ad6_A Methanol dehydrogenase 95.6 0.67 2.3E-05 48.9 19.5 130 92-239 56-193 (571)
111 1ri6_A Putative isomerase YBHE 95.6 1.3 4.5E-05 42.0 20.3 185 174-387 61-261 (343)
112 4e54_B DNA damage-binding prot 95.5 0.27 9.3E-06 49.6 15.8 192 98-336 131-329 (435)
113 2z2n_A Virginiamycin B lyase; 95.5 1.5 5.3E-05 40.7 27.1 226 98-387 25-254 (299)
114 3dwl_C Actin-related protein 2 95.5 0.47 1.6E-05 46.3 17.1 200 98-342 66-289 (377)
115 2xdw_A Prolyl endopeptidase; a 95.5 1.9 6.5E-05 46.5 23.2 262 96-389 81-369 (710)
116 3pe7_A Oligogalacturonate lyas 95.4 1.8 6.1E-05 42.2 21.0 198 114-342 60-281 (388)
117 3hfq_A Uncharacterized protein 95.4 1.3 4.3E-05 42.7 19.6 201 161-388 6-218 (347)
118 2ynn_A Coatomer subunit beta'; 95.4 1.9 6.5E-05 40.8 23.9 233 98-390 24-261 (304)
119 1qhu_A Protein (hemopexin); be 95.3 2 6.9E-05 43.7 21.1 189 156-389 158-386 (460)
120 4gga_A P55CDC, cell division c 95.3 2.6 8.8E-05 41.9 23.4 223 114-390 125-355 (420)
121 1nir_A Nitrite reductase; hemo 95.3 0.36 1.2E-05 50.7 16.0 193 174-390 249-460 (543)
122 1vyh_C Platelet-activating fac 95.2 2.7 9.3E-05 41.8 23.5 186 98-336 161-371 (410)
123 3ei3_B DNA damage-binding prot 95.2 1.6 5.4E-05 42.6 19.9 190 158-390 87-284 (383)
124 3azo_A Aminopeptidase; POP fam 95.2 0.77 2.6E-05 48.9 18.8 154 172-341 160-332 (662)
125 3jro_A Fusion protein of prote 95.2 0.45 1.5E-05 52.1 17.1 196 156-389 20-239 (753)
126 2ecf_A Dipeptidyl peptidase IV 95.1 0.63 2.2E-05 50.3 17.9 63 276-341 264-328 (741)
127 3c5m_A Oligogalacturonate lyas 95.1 0.74 2.5E-05 45.0 16.9 204 172-394 167-390 (396)
128 1pby_B Quinohemoprotein amine 95.0 2.4 8.3E-05 40.0 21.5 239 99-391 46-313 (337)
129 3zwl_B Eukaryotic translation 94.9 1.8 6.1E-05 41.4 19.1 198 156-391 43-252 (369)
130 3dr2_A Exported gluconolactona 94.9 2.6 9E-05 39.8 21.5 224 99-372 57-296 (305)
131 3azo_A Aminopeptidase; POP fam 94.9 4.7 0.00016 42.7 28.2 199 113-342 160-377 (662)
132 4aow_A Guanine nucleotide-bind 94.9 2.7 9.1E-05 39.8 22.2 236 98-390 97-339 (340)
133 2ad6_A Methanol dehydrogenase 94.9 4.6 0.00016 42.5 23.7 124 152-291 58-194 (571)
134 3scy_A Hypothetical bacterial 94.8 3.1 0.00011 40.2 28.1 115 258-391 221-342 (361)
135 1nir_A Nitrite reductase; hemo 94.8 3.3 0.00011 43.2 21.8 236 98-388 148-402 (543)
136 2pbi_B Guanine nucleotide-bind 94.8 3.2 0.00011 40.3 24.5 147 208-390 166-317 (354)
137 3mmy_A MRNA export factor; mRN 94.8 2.9 9.8E-05 39.9 20.1 184 99-335 54-248 (368)
138 2pm9_A Protein WEB1, protein t 94.8 1.4 4.9E-05 43.2 18.2 196 157-390 126-339 (416)
139 2aq5_A Coronin-1A; WD40 repeat 94.8 1.6 5.3E-05 43.2 18.5 199 156-390 93-301 (402)
140 1yiq_A Quinohemoprotein alcoho 94.7 5.7 0.00019 42.8 26.4 124 152-290 66-200 (689)
141 2qc5_A Streptogramin B lactona 94.6 2.8 9.5E-05 38.9 24.3 188 98-340 72-265 (300)
142 1w6s_A Methanol dehydrogenase 94.6 3.7 0.00013 43.5 21.8 132 92-240 56-200 (599)
143 2pm7_B Protein transport prote 94.6 3 0.0001 39.2 22.6 196 157-393 67-291 (297)
144 2vdu_B TRNA (guanine-N(7)-)-me 94.6 4.3 0.00015 40.7 24.0 112 156-289 160-276 (450)
145 1vyh_C Platelet-activating fac 94.6 1.9 6.5E-05 42.9 18.7 148 156-339 119-270 (410)
146 3odt_A Protein DOA1; ubiquitin 94.5 3 0.0001 38.8 21.9 227 97-391 27-258 (313)
147 3iz6_a 40S ribosomal protein R 94.5 3.9 0.00013 40.0 24.4 196 157-389 170-376 (380)
148 3c5m_A Oligogalacturonate lyas 94.5 0.66 2.3E-05 45.4 14.9 201 114-341 168-391 (396)
149 3iuj_A Prolyl endopeptidase; h 94.5 4.6 0.00016 43.5 22.7 211 98-341 139-366 (693)
150 2qc5_A Streptogramin B lactona 94.5 3 0.0001 38.6 26.5 224 98-386 30-258 (300)
151 1pgu_A Actin interacting prote 94.4 4.6 0.00016 41.9 22.1 198 156-390 77-285 (615)
152 3bg1_A Protein SEC13 homolog; 94.4 1.4 4.7E-05 42.1 16.6 112 98-239 24-143 (316)
153 1yfq_A Cell cycle arrest prote 94.3 3.6 0.00012 38.9 21.3 195 156-390 67-284 (342)
154 2ynn_A Coatomer subunit beta'; 94.3 3.5 0.00012 38.9 19.1 193 156-390 24-219 (304)
155 1yr2_A Prolyl oligopeptidase; 94.2 5.1 0.00018 43.4 22.5 152 172-340 242-401 (741)
156 3no2_A Uncharacterized protein 94.2 2.6 9E-05 39.5 17.7 187 156-390 4-197 (276)
157 4a2l_A BT_4663, two-component 94.1 8.1 0.00028 42.2 30.1 196 98-342 98-299 (795)
158 4e54_B DNA damage-binding prot 94.1 0.49 1.7E-05 47.7 13.2 194 156-390 131-329 (435)
159 1jmx_B Amine dehydrogenase; ox 94.1 2 6.9E-05 40.9 17.2 53 275-338 275-329 (349)
160 3e5z_A Putative gluconolactona 94.1 3 0.0001 39.0 18.1 192 156-389 39-247 (296)
161 2pm9_A Protein WEB1, protein t 94.0 3.4 0.00012 40.4 19.2 202 156-390 78-296 (416)
162 2aq5_A Coronin-1A; WD40 repeat 94.0 1.9 6.6E-05 42.5 17.3 158 158-341 145-308 (402)
163 3i2n_A WD repeat-containing pr 94.0 1 3.4E-05 43.2 14.7 237 99-390 31-293 (357)
164 1pgu_A Actin interacting prote 93.9 2.3 8E-05 44.2 18.5 151 210-389 175-329 (615)
165 1w6s_A Methanol dehydrogenase 93.9 6.9 0.00024 41.3 22.0 125 151-291 57-200 (599)
166 1q7f_A NHL, brain tumor CG1071 93.8 4.1 0.00014 37.7 23.1 195 156-388 40-238 (286)
167 1qks_A Cytochrome CD1 nitrite 93.7 4.3 0.00015 42.6 20.0 205 156-389 255-478 (567)
168 2dg1_A DRP35, lactonase; beta 93.7 2.9 9.9E-05 39.8 17.5 155 156-334 55-213 (333)
169 1rwi_B Serine/threonine-protei 93.7 2.8 9.7E-05 38.3 16.9 190 93-334 71-264 (270)
170 3sfz_A APAF-1, apoptotic pepti 93.7 0.78 2.7E-05 53.0 15.3 233 98-391 972-1210(1249)
171 2bkl_A Prolyl endopeptidase; m 93.6 1.6 5.6E-05 46.9 16.9 212 98-340 131-357 (695)
172 1pjx_A Dfpase, DIISOPROPYLFLUO 93.6 3.8 0.00013 38.4 17.8 197 99-336 83-301 (314)
173 1kv9_A Type II quinohemoprotei 93.6 9.3 0.00032 40.9 25.2 130 92-239 60-195 (668)
174 3lrv_A PRE-mRNA-splicing facto 93.5 5.6 0.00019 38.1 19.9 191 156-390 47-246 (343)
175 3ott_A Two-component system se 93.3 7.7 0.00026 42.1 21.8 224 115-389 393-627 (758)
176 1yr2_A Prolyl oligopeptidase; 93.1 5.8 0.0002 42.9 20.5 224 96-342 116-360 (741)
177 3dm0_A Maltose-binding peripla 93.1 9.3 0.00032 40.8 22.0 191 98-338 441-636 (694)
178 3lrv_A PRE-mRNA-splicing facto 93.1 6.3 0.00022 37.7 21.9 192 98-336 47-246 (343)
179 1erj_A Transcriptional repress 93.0 7.3 0.00025 38.2 23.7 196 98-337 134-344 (393)
180 2ymu_A WD-40 repeat protein; u 93.0 7.3 0.00025 40.1 20.4 147 156-339 396-544 (577)
181 3dm0_A Maltose-binding peripla 92.9 11 0.00038 40.1 22.8 188 156-390 441-634 (694)
182 2pbi_B Guanine nucleotide-bind 92.9 7.2 0.00025 37.7 26.8 147 157-336 166-317 (354)
183 4aow_A Guanine nucleotide-bind 92.8 6.4 0.00022 37.0 21.2 149 156-337 97-249 (340)
184 2vdu_B TRNA (guanine-N(7)-)-me 92.8 8.5 0.00029 38.5 20.8 160 157-339 210-398 (450)
185 2ymu_A WD-40 repeat protein; u 92.8 8.6 0.00029 39.6 20.7 182 156-387 355-538 (577)
186 3f3f_A Nucleoporin SEH1; struc 92.7 6.5 0.00022 36.8 25.7 150 157-334 71-249 (351)
187 3g4e_A Regucalcin; six bladed 92.7 4.3 0.00015 38.2 16.6 212 156-411 24-250 (297)
188 2pm7_B Protein transport prote 92.7 6.5 0.00022 36.8 18.3 115 208-342 170-294 (297)
189 3no2_A Uncharacterized protein 92.7 6.5 0.00022 36.7 22.5 187 99-340 5-203 (276)
190 1pby_B Quinohemoprotein amine 92.7 6.7 0.00023 36.8 20.9 145 114-290 11-169 (337)
191 3i2n_A WD repeat-containing pr 92.3 2.5 8.6E-05 40.3 14.7 194 157-390 31-245 (357)
192 1flg_A Protein (quinoprotein e 92.3 13 0.00044 39.1 24.1 124 92-239 62-201 (582)
193 4gga_A P55CDC, cell division c 92.2 9.8 0.00033 37.6 26.4 234 98-390 158-397 (420)
194 2oiz_A Aromatic amine dehydrog 92.1 9.4 0.00032 37.1 22.7 66 309-389 265-335 (361)
195 1kv9_A Type II quinohemoprotei 92.0 15 0.0005 39.3 26.1 123 152-290 62-195 (668)
196 4a11_B DNA excision repair pro 91.8 7.2 0.00024 37.7 17.6 199 156-391 55-279 (408)
197 3f3f_A Nucleoporin SEH1; struc 91.7 8.5 0.00029 35.9 20.9 29 309-342 317-346 (351)
198 1qhu_A Protein (hemopexin); be 91.7 4.7 0.00016 41.0 16.1 183 98-334 158-385 (460)
199 1pex_A Collagenase-3, MMP-13; 91.7 6.6 0.00023 35.2 15.5 152 150-339 27-197 (207)
200 3b7f_A Glycosyl hydrolase, BNR 91.5 11 0.00039 36.9 24.8 282 74-394 43-378 (394)
201 3sfz_A APAF-1, apoptotic pepti 91.0 26 0.00088 40.1 25.0 231 98-388 668-913 (1249)
202 1erj_A Transcriptional repress 90.5 14 0.00047 36.1 20.5 152 207-389 134-288 (393)
203 3frx_A Guanine nucleotide-bind 90.4 12 0.00041 35.3 22.6 145 98-286 76-229 (319)
204 3b7f_A Glycosyl hydrolase, BNR 90.4 14 0.00047 36.3 18.1 196 175-394 33-268 (394)
205 1npe_A Nidogen, entactin; glyc 89.8 12 0.0004 34.3 25.2 198 92-339 39-243 (267)
206 2bkl_A Prolyl endopeptidase; m 89.8 14 0.0005 39.4 19.0 164 156-342 237-405 (695)
207 1flg_A Protein (quinoprotein e 89.8 22 0.00074 37.3 24.7 121 151-289 63-200 (582)
208 2hes_X YDR267CP; beta-propelle 89.7 14 0.00048 35.1 21.4 197 156-388 24-230 (330)
209 3bg1_A Protein SEC13 homolog; 89.4 6.1 0.00021 37.4 14.1 112 209-343 180-303 (316)
210 3ott_A Two-component system se 89.4 26 0.0009 37.8 23.9 190 98-341 73-267 (758)
211 3fvz_A Peptidyl-glycine alpha- 89.3 15 0.00052 34.8 24.4 208 98-334 101-322 (329)
212 1yfq_A Cell cycle arrest prote 89.0 15 0.00052 34.4 18.4 188 156-389 22-226 (342)
213 1qks_A Cytochrome CD1 nitrite 88.9 25 0.00084 36.8 25.3 237 98-389 166-422 (567)
214 1itv_A MMP9; adaptive molecula 88.9 12 0.00041 33.1 16.0 153 151-338 11-178 (195)
215 3fvz_A Peptidyl-glycine alpha- 88.8 16 0.00056 34.6 29.6 238 114-389 69-323 (329)
216 4ggc_A P55CDC, cell division c 88.6 15 0.00051 34.0 22.3 224 114-390 45-275 (318)
217 3iz6_a 40S ribosomal protein R 88.2 20 0.00067 34.8 21.7 151 156-335 217-376 (380)
218 2gop_A Trilobed protease; beta 88.1 18 0.00061 34.2 18.0 141 172-340 151-297 (347)
219 3mmy_A MRNA export factor; mRN 87.6 19 0.00065 33.9 18.9 144 157-336 54-201 (368)
220 1pex_A Collagenase-3, MMP-13; 87.5 13 0.00046 33.1 14.0 153 202-390 28-194 (207)
221 1k32_A Tricorn protease; prote 87.4 23 0.00079 39.9 19.4 236 97-390 212-463 (1045)
222 2cn3_A Xyloglucanase, beta-1,4 87.3 35 0.0012 36.8 30.0 267 72-373 9-322 (737)
223 3dr2_A Exported gluconolactona 87.1 8.6 0.00029 36.1 13.5 155 156-336 56-226 (305)
224 1itv_A MMP9; adaptive molecula 87.1 15 0.00053 32.4 15.5 153 93-286 11-176 (195)
225 4h5i_A Guanine nucleotide-exch 86.8 23 0.0008 34.2 23.5 157 207-390 144-302 (365)
226 3gre_A Serine/threonine-protei 86.7 23 0.0008 34.7 17.1 155 156-338 181-363 (437)
227 3ju4_A Endo-N-acetylneuraminid 86.3 27 0.00093 34.4 20.0 184 71-269 267-482 (670)
228 3iuj_A Prolyl endopeptidase; h 86.1 39 0.0013 36.0 23.2 148 173-343 259-414 (693)
229 2xyi_A Probable histone-bindin 85.3 30 0.001 34.1 19.2 146 210-389 196-354 (430)
230 3gre_A Serine/threonine-protei 85.2 25 0.00085 34.5 16.4 109 207-337 181-295 (437)
231 3c7x_A Matrix metalloproteinas 84.9 6.5 0.00022 34.9 10.4 153 94-286 11-177 (196)
232 4h5i_A Guanine nucleotide-exch 84.2 31 0.0011 33.2 21.0 182 114-334 157-343 (365)
233 2mad_H Methylamine dehydrogena 83.7 34 0.0012 33.3 30.8 73 309-392 278-354 (373)
234 2fp8_A Strictosidine synthase; 83.6 30 0.001 32.6 19.5 207 92-335 83-314 (322)
235 3k26_A Polycomb protein EED; W 83.2 30 0.001 32.4 16.9 108 208-336 85-194 (366)
236 3c75_H MADH, methylamine dehyd 83.1 40 0.0014 33.7 19.5 121 99-237 85-213 (426)
237 2ghs_A AGR_C_1268P; regucalcin 82.1 35 0.0012 32.3 22.5 145 156-333 60-209 (326)
238 1su3_A Interstitial collagenas 81.8 33 0.0011 34.6 15.4 154 151-339 267-437 (450)
239 3o4h_A Acylamino-acid-releasin 81.7 40 0.0014 34.7 16.9 155 208-392 75-231 (582)
240 1xfd_A DIP, dipeptidyl aminope 81.0 59 0.002 34.3 18.3 67 224-291 228-296 (723)
241 2p4o_A Hypothetical protein; p 80.9 37 0.0012 31.8 27.3 244 73-372 19-277 (306)
242 1sqj_A OXG-RCBH, oligoxylogluc 80.5 70 0.0024 34.8 29.8 269 73-373 3-316 (789)
243 3c7x_A Matrix metalloproteinas 80.1 20 0.00069 31.6 11.7 153 151-336 10-177 (196)
244 1xfd_A DIP, dipeptidyl aminope 79.8 17 0.00057 38.7 13.4 111 174-292 38-151 (723)
245 1n7d_A LDL receptor, low-densi 79.4 48 0.0016 35.5 16.7 154 155-339 463-619 (699)
246 3o4h_A Acylamino-acid-releasin 79.0 55 0.0019 33.7 16.8 139 172-338 89-231 (582)
247 2xzm_R RACK1; ribosome, transl 78.6 45 0.0015 31.5 19.4 63 207-285 87-150 (343)
248 4ggc_A P55CDC, cell division c 78.1 42 0.0014 30.8 25.9 232 98-388 78-315 (318)
249 3hrp_A Uncharacterized protein 77.9 56 0.0019 32.2 28.8 203 98-342 141-362 (409)
250 3oyo_A Hemopexin fold protein 77.8 31 0.0011 31.2 12.5 105 155-283 69-197 (225)
251 2fp8_A Strictosidine synthase; 75.8 53 0.0018 30.8 22.5 208 150-390 83-315 (322)
252 1gen_A Gelatinase A; hydrolase 75.4 45 0.0016 29.9 14.1 154 93-286 35-204 (218)
253 1nr0_A Actin interacting prote 75.2 82 0.0028 32.7 23.9 105 262-390 462-569 (611)
254 2xyi_A Probable histone-bindin 75.1 66 0.0022 31.5 18.3 107 262-389 196-310 (430)
255 2gop_A Trilobed protease; beta 74.4 57 0.0019 30.5 16.9 187 113-341 42-258 (347)
256 2hz6_A Endoplasmic reticulum t 73.8 0.52 1.8E-05 46.7 -0.8 142 154-339 7-156 (369)
257 1n7d_A LDL receptor, low-densi 73.3 35 0.0012 36.6 13.5 220 114-390 386-616 (699)
258 1hxn_A Hemopexin, HPX; heme, b 71.8 30 0.001 31.1 10.6 105 97-233 27-144 (219)
259 1nr0_A Actin interacting prote 71.7 98 0.0034 32.1 21.9 192 159-390 162-357 (611)
260 2xe4_A Oligopeptidase B; hydro 70.6 1.2E+02 0.0041 32.6 19.7 142 173-332 247-398 (751)
261 2mad_H Methylamine dehydrogena 70.5 81 0.0028 30.6 24.6 119 156-288 32-160 (373)
262 2p9w_A MAL S 1 allergenic prot 69.3 53 0.0018 31.6 12.3 142 156-319 147-305 (334)
263 2xzm_R RACK1; ribosome, transl 69.2 76 0.0026 29.8 24.3 63 156-234 87-150 (343)
264 3ba0_A Macrophage metalloelast 68.4 91 0.0031 30.3 16.0 156 150-339 184-355 (365)
265 3hrp_A Uncharacterized protein 67.3 99 0.0034 30.4 23.7 151 156-335 141-299 (409)
266 3hxj_A Pyrrolo-quinoline quino 67.1 79 0.0027 29.2 18.9 178 96-339 105-290 (330)
267 1gen_A Gelatinase A; hydrolase 66.8 71 0.0024 28.5 16.1 154 150-336 34-204 (218)
268 1su3_A Interstitial collagenas 66.8 99 0.0034 31.1 14.3 151 202-390 267-434 (450)
269 3a0f_A Xyloglucanase; beta-pro 64.9 1.6E+02 0.0053 31.8 24.8 242 72-342 8-292 (763)
270 3c75_H MADH, methylamine dehyd 64.9 1.2E+02 0.004 30.3 17.8 120 156-287 84-212 (426)
271 3dw8_B Serine/threonine-protei 64.4 1E+02 0.0035 29.8 14.1 71 309-390 188-260 (447)
272 3m0c_C LDL receptor, low-densi 64.2 1.7E+02 0.0057 31.9 25.8 218 114-388 404-632 (791)
273 3k6s_A Integrin alpha-X; cell 62.6 1.9E+02 0.0064 32.8 17.0 187 199-389 335-542 (1095)
274 3frx_A Guanine nucleotide-bind 62.3 1E+02 0.0034 28.7 21.2 146 156-336 76-229 (319)
275 3sjl_D Methylamine dehydrogena 61.5 1.3E+02 0.0043 29.6 20.2 74 309-393 291-368 (386)
276 3oyo_A Hemopexin fold protein 61.0 94 0.0032 27.9 16.5 148 155-333 12-197 (225)
277 3p5b_L Low density lipoprotein 60.2 1.3E+02 0.0045 29.4 24.7 220 114-390 92-322 (400)
278 2xe4_A Oligopeptidase B; hydro 58.5 1.5E+02 0.005 31.9 14.9 151 113-293 294-467 (751)
279 1k32_A Tricorn protease; prote 57.7 2.3E+02 0.008 31.5 29.6 195 114-341 33-242 (1045)
280 3v65_B Low-density lipoprotein 57.3 1.4E+02 0.0049 28.9 26.5 218 114-390 96-320 (386)
281 3ba0_A Macrophage metalloelast 57.3 1.4E+02 0.0049 28.9 15.7 155 93-289 185-355 (365)
282 1z68_A Fibroblast activation p 57.2 1.3E+02 0.0043 31.8 14.1 113 224-341 224-353 (719)
283 3v65_B Low-density lipoprotein 56.4 1.5E+02 0.0051 28.8 24.0 196 92-335 119-319 (386)
284 1hxn_A Hemopexin, HPX; heme, b 56.2 78 0.0027 28.3 10.3 142 155-334 27-197 (219)
285 1sqj_A OXG-RCBH, oligoxylogluc 54.5 2.4E+02 0.0081 30.5 27.4 246 72-341 45-340 (789)
286 3m0c_C LDL receptor, low-densi 53.2 2.5E+02 0.0085 30.4 24.5 188 98-335 435-633 (791)
287 1ijq_A LDL receptor, low-densi 51.6 1.5E+02 0.0053 27.6 26.3 197 92-336 33-240 (316)
288 4a5s_A Dipeptidyl peptidase 4 51.5 1.7E+02 0.0059 31.0 14.1 107 174-292 37-149 (740)
289 3v64_C Agrin; beta propeller, 50.0 1.8E+02 0.006 27.7 27.9 218 114-390 53-277 (349)
290 3ju4_A Endo-N-acetylneuraminid 49.7 2E+02 0.007 28.4 24.1 170 145-319 282-482 (670)
291 3v64_C Agrin; beta propeller, 47.1 1.9E+02 0.0066 27.4 25.0 194 92-335 76-276 (349)
292 1ck7_A Protein (gelatinase A); 46.8 1.1E+02 0.0038 32.2 11.0 154 150-336 447-617 (631)
293 3k6s_A Integrin alpha-X; cell 46.2 54 0.0019 37.2 9.1 137 249-388 334-480 (1095)
294 1npe_A Nidogen, entactin; glyc 45.8 1.6E+02 0.0056 26.2 25.1 197 150-392 39-242 (267)
295 2p4o_A Hypothetical protein; p 45.3 1.9E+02 0.0063 26.7 18.8 150 156-334 42-198 (306)
296 2ece_A 462AA long hypothetical 45.0 2.5E+02 0.0087 28.2 22.2 179 98-292 95-297 (462)
297 1z68_A Fibroblast activation p 43.5 3.1E+02 0.01 28.7 16.5 153 172-335 223-394 (719)
298 3lp9_A LS-24; SEED albumin, pl 42.3 26 0.00089 31.7 4.7 63 156-234 129-202 (227)
299 2hz6_A Endoplasmic reticulum t 42.0 5.4 0.00018 39.1 0.0 66 204-289 6-75 (369)
300 3dw8_B Serine/threonine-protei 40.7 2.5E+02 0.0086 26.9 19.4 22 311-337 240-261 (447)
301 2p9w_A MAL S 1 allergenic prot 40.1 2.6E+02 0.0087 26.8 15.7 163 207-389 147-324 (334)
302 3hxj_A Pyrrolo-quinoline quino 39.6 2.2E+02 0.0076 25.9 17.7 140 154-339 105-250 (330)
303 3a0f_A Xyloglucanase; beta-pro 39.1 3.9E+02 0.013 28.6 23.5 216 99-340 88-351 (763)
304 3hx6_A Type 4 fimbrial biogene 38.7 3.5E+02 0.012 28.0 18.5 75 209-286 152-234 (570)
305 2oaj_A Protein SNI1; WD40 repe 38.4 4.3E+02 0.015 28.9 24.1 196 156-390 28-244 (902)
306 4d9s_A UVB-resistance protein 36.4 3.1E+02 0.011 26.6 14.8 18 250-267 338-355 (406)
307 3tc9_A Hypothetical hydrolase; 35.3 3.3E+02 0.011 26.7 13.2 144 156-333 149-300 (430)
308 2j04_A TAU60, YPL007P, hypothe 35.0 4.1E+02 0.014 27.6 15.4 109 207-336 96-213 (588)
309 3vu4_A KMHSV2; beta-propeller 34.1 3E+02 0.01 25.8 25.4 66 258-335 205-272 (355)
310 3vu4_A KMHSV2; beta-propeller 32.8 3.1E+02 0.011 25.6 19.9 60 207-285 70-129 (355)
311 2bf9_A Pancreatic hormone; tur 32.4 23 0.00079 21.6 1.7 13 506-518 21-33 (36)
312 2ece_A 462AA long hypothetical 32.0 4E+02 0.014 26.7 25.6 213 156-387 95-351 (462)
313 3sre_A PON1, serum paraoxonase 30.8 3.7E+02 0.013 25.8 15.9 163 156-334 60-252 (355)
314 1ijq_A LDL receptor, low-densi 30.6 3.3E+02 0.011 25.2 28.6 220 114-390 10-240 (316)
315 3v4v_A Integrin alpha-4; cell 30.3 80 0.0027 33.1 6.7 134 249-386 166-311 (597)
316 4d9s_A UVB-resistance protein 29.5 4E+02 0.014 25.8 22.9 18 250-267 234-251 (406)
317 1bba_A Bovine pancreatic polyp 28.8 29 0.00098 21.2 1.7 13 506-518 21-33 (36)
318 4hvt_A Ritya.17583.B, post-pro 28.2 5.7E+02 0.019 27.2 19.0 103 223-338 268-385 (711)
319 2cn3_A Xyloglucanase, beta-1,4 28.1 5.6E+02 0.019 27.1 25.0 111 226-340 224-343 (737)
320 1fwx_A Nitrous oxide reductase 26.4 5.6E+02 0.019 26.6 12.8 157 156-335 101-309 (595)
321 1jof_A Carboxy-CIS,CIS-muconat 25.5 4.2E+02 0.014 24.7 13.9 165 173-348 167-355 (365)
322 1f8p_A Neuropeptide Y (PNPY); 25.4 25 0.00086 21.7 1.0 13 506-518 21-33 (37)
323 2oaj_A Protein SNI1; WD40 repe 23.6 7.4E+02 0.025 27.0 26.4 155 157-339 69-247 (902)
324 4gq1_A NUP37; propeller, trans 22.5 5E+02 0.017 24.6 12.0 66 309-390 155-220 (393)
325 3p5b_L Low density lipoprotein 21.7 5.4E+02 0.019 24.7 26.7 195 92-335 115-321 (400)
326 1ck7_A Protein (gelatinase A); 21.5 2.9E+02 0.0098 29.0 8.9 111 202-335 448-567 (631)
327 2l60_A Peptide YY; GPCR ligand 21.1 48 0.0016 21.0 1.7 14 506-519 25-38 (41)
328 2j04_A TAU60, YPL007P, hypothe 20.4 7.3E+02 0.025 25.7 19.8 181 156-376 96-290 (588)
329 2be1_A Serine/threonine-protei 20.2 1.5E+02 0.0051 28.5 6.0 105 224-339 20-137 (339)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=365.00 Aligned_cols=292 Identities=15% Similarity=0.210 Sum_probs=249.4
Q ss_pred CCCccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCC
Q 009910 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGL 112 (522)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~ 112 (522)
.+|..+..++.||++||..... ......|++ .+++|+.++ ++|.+|.+|++++++++|||+||......
T Consensus 7 ~~r~~~~~~~~i~v~GG~~~~~--~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 75 (302)
T 2xn4_A 7 RLRTPMNLPKLMVVVGGQAPKA--IRSVECYDF------KEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLR 75 (302)
T ss_dssp --------CEEEEEECCBSSSB--CCCEEEEET------TTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSB
T ss_pred cCCcccCCCCEEEEECCCCCCC--CCcEEEEcC------cCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCcc
Confidence 4566666788899999965421 122334555 889999997 89999999999999999999999887778
Q ss_pred cccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
.+++++||+.+++|+.++++ +.+|..|+++.++++||++||... ....+++++||+.+++|+.+++
T Consensus 76 ~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~~-- 141 (302)
T 2xn4_A 76 VRTVDSYDPVKDQWTSVANM-----------RDRRSTLGAAVLNGLLYAVGGFDG-STGLSSVEAYNIKSNEWFHVAP-- 141 (302)
T ss_dssp CCCEEEEETTTTEEEEECCC-----------SSCCBSCEEEEETTEEEEEEEECS-SCEEEEEEEEETTTTEEEEECC--
T ss_pred ccceEEECCCCCceeeCCCC-----------CccccceEEEEECCEEEEEcCCCC-CccCceEEEEeCCCCeEeecCC--
Confidence 89999999999999999873 346788999999999999999864 3457899999999999999984
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCC-CccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCC
Q 009910 193 DIPVARSGHTVVRASSVLILFGGEDGKR-RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (522)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~ 271 (522)
+|.+|..|+++.++++||++||.+... ..++++++||+.+++|+.+. ++|.+|..|++++++++ |||+||.+..
T Consensus 142 -~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~ 216 (302)
T 2xn4_A 142 -MNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNL-LYAVGGHDGP 216 (302)
T ss_dssp -CSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCBSSS
T ss_pred -CCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECCE-EEEECCCCCC
Confidence 999999999999999999999997653 35889999999999999997 88999999999999988 9999999877
Q ss_pred CCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCC
Q 009910 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSN 351 (522)
Q Consensus 272 ~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r 351 (522)
...+++++||+++++|+.+..+ |.+|..|+++.++++|||+||.+.....+++++||+.+++|+.++. .++.+|
T Consensus 217 ~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~r 290 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWRQVADM---NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSS---CMSTGR 290 (302)
T ss_dssp SBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSS---CCSSCC
T ss_pred cccceEEEEeCCCCCEeeCCCC---CCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCc---ccCccc
Confidence 7789999999999999999765 8899999999999999999998877778899999999999999762 344788
Q ss_pred CCcEEEEEe
Q 009910 352 KGFTLVLVQ 360 (522)
Q Consensus 352 ~~~~~~~~~ 360 (522)
..|++++++
T Consensus 291 ~~~~~~~~~ 299 (302)
T 2xn4_A 291 SYAGVTVID 299 (302)
T ss_dssp BSCEEEEEE
T ss_pred ccceEEEec
Confidence 999999887
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.4e-45 Score=366.91 Aligned_cols=293 Identities=18% Similarity=0.269 Sum_probs=248.5
Q ss_pred CCCCCCCccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCc-
Q 009910 29 PIRPPKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGE- 107 (522)
Q Consensus 29 p~~~~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~- 107 (522)
|..+..+.++..++.||++||. .+ ........|++ .+++|+.++ ++|.+|.+|++++++++|||+||.
T Consensus 12 ~~~~~~~~~~~~~~~i~v~GG~-~~-~~~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~ 80 (308)
T 1zgk_A 12 GLVPRGSHAPKVGRLIYTAGGY-FR-QSLSYLEAYNP------SNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRN 80 (308)
T ss_dssp ---------CCCCCCEEEECCB-SS-SBCCCEEEEET------TTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CeeeCCccccCCCCEEEEEeCc-CC-CCcceEEEEcC------CCCeEeECC---CCCcccccceEEEECCEEEEECCCc
Confidence 3444556788889999999997 22 22223334555 899999997 899999999999999999999998
Q ss_pred ---CCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCc
Q 009910 108 ---SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC 184 (522)
Q Consensus 108 ---~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 184 (522)
.....++++++||+.+++|+.++++ +.+|..|++++++++||++||... ....+++++||+.+++
T Consensus 81 ~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 81 NSPDGNTDSSALDCYNPMTNQWSPCAPM-----------SVPRNRIGVGVIDGHIYAVGGSHG-CIHHNSVERYEPERDE 148 (308)
T ss_dssp EETTEEEECCCEEEEETTTTEEEECCCC-----------SSCCBTCEEEEETTEEEEECCEET-TEECCCEEEEETTTTE
T ss_pred CCCCCCeecceEEEECCCCCeEeECCCC-----------CcCccccEEEEECCEEEEEcCCCC-CcccccEEEECCCCCe
Confidence 5555689999999999999999863 346788999999999999999865 3346789999999999
Q ss_pred EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEE
Q 009910 185 WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLI 264 (522)
Q Consensus 185 W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv 264 (522)
|+.+++ +|.+|..|+++.++++||++||.+... .++++++||+.+++|+.+. ++|.+|..|++++++++ |||
T Consensus 149 W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv 220 (308)
T 1zgk_A 149 WHLVAP---MLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNC-IYA 220 (308)
T ss_dssp EEECCC---CSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTE-EEE
T ss_pred EeECCC---CCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCC---CCCCccccceEEEECCE-EEE
Confidence 999984 999999999999999999999998763 4899999999999999997 88999999999999888 999
Q ss_pred EcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCC
Q 009910 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP 344 (522)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 344 (522)
+||.+.....+++++||+++++|+.+..+ |.+|..++++.++++|||+||.+.....+++++||+++++|+.++.+
T Consensus 221 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~- 296 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVETETWTFVAPM---KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM- 296 (308)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC-
T ss_pred EeCCCCCCccceEEEEeCCCCcEEECCCC---CCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCC-
Confidence 99998777789999999999999999765 89999999999999999999998877789999999999999998743
Q ss_pred CCCCCCCCCcEEEEE
Q 009910 345 SSSVTSNKGFTLVLV 359 (522)
Q Consensus 345 ~~~~~~r~~~~~~~~ 359 (522)
+.+|.+|+++++
T Consensus 297 ---p~~r~~~~~~~l 308 (308)
T 1zgk_A 297 ---TSGRSGVGVAVT 308 (308)
T ss_dssp ---SSCCBSCEEEEC
T ss_pred ---CCCcccceeEeC
Confidence 377888888763
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.2e-45 Score=365.55 Aligned_cols=281 Identities=17% Similarity=0.219 Sum_probs=239.9
Q ss_pred CCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEE
Q 009910 83 GDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLV 162 (522)
Q Consensus 83 ~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~ 162 (522)
++-|.+|..|+++.++++||+|||. ....++++++||+.+++|+.++.+ +.+|.+|+++.++++||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~ 76 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADL-----------QVPRSGLAGCVVGGLLYAV 76 (308)
T ss_dssp ------------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCC-----------SSCCBSCEEEEETTEEEEE
T ss_pred ccCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCC-----------CcccccceEEEECCEEEEE
Confidence 3567889999999999999999998 456789999999999999999763 3467889999999999999
Q ss_pred cccC---CCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEe
Q 009910 163 GGKT---DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (522)
Q Consensus 163 GG~~---~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 239 (522)
||.. ......+++++||+.+++|+.+++ +|.+|..|+++.++++||++||.+.. ..++++++||+.+++|+.+
T Consensus 77 GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 77 GGRNNSPDGNTDSSALDCYNPMTNQWSPCAP---MSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLV 152 (308)
T ss_dssp CCEEEETTEEEECCCEEEEETTTTEEEECCC---CSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEEC
T ss_pred CCCcCCCCCCeecceEEEECCCCCeEeECCC---CCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeEC
Confidence 9984 233456789999999999999984 99999999999999999999998765 5689999999999999999
Q ss_pred ecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccC
Q 009910 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (522)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~ 319 (522)
+ ++|.+|..|++++++++ ||++||.+....++++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+
T Consensus 153 ~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~ 225 (308)
T 1zgk_A 153 A---PMLTRRIGVGVAVLNRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGYD 225 (308)
T ss_dssp C---CCSSCCBSCEEEEETTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBC
T ss_pred C---CCCccccceEEEEECCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEEECCEEEEEeCCC
Confidence 7 88999999999999887 99999998777789999999999999999765 88999999999999999999998
Q ss_pred CCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 009910 320 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (522)
Q Consensus 320 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~y~~~~~~w~~~ 394 (522)
.....+++++||+.+++|+.+.. ++.+|..+++++++ ++|||+||.++.. .+++++||+++++|...
T Consensus 226 ~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 226 GQDQLNSVERYDVETETWTFVAP----MKHRRSALGITVHQ----GRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp SSSBCCCEEEEETTTTEEEECCC----CSSCCBSCEEEEET----TEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred CCCccceEEEEeCCCCcEEECCC----CCCCccceEEEEEC----CEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 77778999999999999999873 34678889998886 6799999987654 88999999999999876
No 4
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=5.5e-45 Score=362.12 Aligned_cols=282 Identities=18% Similarity=0.219 Sum_probs=249.0
Q ss_pred CCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEE
Q 009910 41 SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLN 120 (522)
Q Consensus 41 ~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 120 (522)
.+.||++||... ......|++ .+++|+.++ ++|.+|.+|++++++++|||+||.. ...++++++||
T Consensus 11 ~~~l~~~GG~~~----~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d 76 (306)
T 3ii7_A 11 HDYRIALFGGSQ----PQSCRYFNP------KDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYN 76 (306)
T ss_dssp CCEEEEEECCSS----TTSEEEEET------TTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEE
T ss_pred cceEEEEeCCCC----CceEEEecC------CCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEe
Confidence 467999999554 122233565 899999997 8999999999999999999999988 66789999999
Q ss_pred cCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc
Q 009910 121 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 200 (522)
Q Consensus 121 ~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 200 (522)
+.+++|+.++++ +.+|.+|++++++++|||+||.+......+++++||+.+++|+.++ .+|.+|..
T Consensus 77 ~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~ 142 (306)
T 3ii7_A 77 VVKDSWYSKLGP-----------PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCS 142 (306)
T ss_dssp TTTTEEEEEECC-----------SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBS
T ss_pred CCCCeEEECCCC-----------CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcce
Confidence 999999999863 3567889999999999999999755667889999999999999997 49999999
Q ss_pred eEEEEECCEEEEEcccCCCCC---ccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcE
Q 009910 201 HTVVRASSVLILFGGEDGKRR---KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (522)
Q Consensus 201 ~~~~~~~~~iyv~GG~~~~~~---~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v 277 (522)
|+++.++++||++||...... .++++++||+.+++|+.++ ++|.+|..|++++++++ |||+||.+.....+++
T Consensus 143 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~~ 218 (306)
T 3ii7_A 143 HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKDK-IFAVGGQNGLGGLDNV 218 (306)
T ss_dssp CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCEETTEEBCCE
T ss_pred eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEECCE-EEEEeCCCCCCCCceE
Confidence 999999999999999876533 2899999999999999997 89999999999999888 9999999877778999
Q ss_pred EEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEE
Q 009910 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (522)
Q Consensus 278 ~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~ 357 (522)
++||+++++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+.++.+ +.+|.+|+++
T Consensus 219 ~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~r~~~~~~ 291 (306)
T 3ii7_A 219 EYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKV----RAFPVTSCLI 291 (306)
T ss_dssp EEEETTTTEEEECCCC---SCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEE----ECCSCTTCEE
T ss_pred EEeeCCCCcEEECCCC---CCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCc----ccccceeEEE
Confidence 9999999999999765 88999999999999999999998877889999999999999998744 3788889998
Q ss_pred EEee
Q 009910 358 LVQH 361 (522)
Q Consensus 358 ~~~~ 361 (522)
++.+
T Consensus 292 ~~~~ 295 (306)
T 3ii7_A 292 CVVD 295 (306)
T ss_dssp EEEE
T ss_pred EECC
Confidence 8863
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=357.39 Aligned_cols=285 Identities=19% Similarity=0.326 Sum_probs=249.1
Q ss_pred CCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEE
Q 009910 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVL 119 (522)
Q Consensus 40 ~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 119 (522)
.++.||++||..++.........|++ .+++|+.++ .+|.+|.+|+++.++++|||+||..+....+++++|
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDP------KTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEET------TTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcC------CCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEE
Confidence 46779999993332222223334555 889999998 789999999999999999999998877788999999
Q ss_pred EcCCCc---EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCC
Q 009910 120 NFDRFS---WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV 196 (522)
Q Consensus 120 d~~~~~---W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~ 196 (522)
|+.+++ |+.++++ +.+|..|+++.++++||++||... ....+++++||+.+++|+.+++ +|.
T Consensus 84 d~~~~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~~---~p~ 148 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPM-----------NVRRGLAGATTLGDMIYVSGGFDG-SRRHTSMERYDPNIDQWSMLGD---MQT 148 (301)
T ss_dssp ETTCCTTCCCEEECCC-----------SSCCBSCEEEEETTEEEEECCBCS-SCBCCEEEEEETTTTEEEEEEE---CSS
T ss_pred ECCCCCCCeeEECCCC-----------CCCccceeEEEECCEEEEEcccCC-CcccceEEEEcCCCCeEEECCC---CCC
Confidence 999999 9999763 346788999999999999999874 3347899999999999999985 899
Q ss_pred CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCc
Q 009910 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLND 276 (522)
Q Consensus 197 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~ 276 (522)
+|..|+++.++++||++||.+.. ..++++++||+.+++|+.+. ++|.+|..|++++++++ |||+||.+.....++
T Consensus 149 ~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~ 223 (301)
T 2vpj_A 149 AREGAGLVVASGVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDH-IYVVGGFDGTAHLSS 223 (301)
T ss_dssp CCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCBCSSSBCCC
T ss_pred CcccceEEEECCEEEEECCCCCC-cccceEEEEeCCCCcEEeCC---CCCcccccceEEEECCE-EEEEeCCCCCcccce
Confidence 99999999999999999998766 47899999999999999997 88999999999999888 999999987777899
Q ss_pred EEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEE
Q 009910 277 LYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTL 356 (522)
Q Consensus 277 v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~ 356 (522)
+++||+++++|+.+..+ |.+|..|+++.++++|||+||.+.....+++++||+++++|+.+..+ +.+|..|++
T Consensus 224 v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----~~~r~~~~~ 296 (301)
T 2vpj_A 224 VEAYNIRTDSWTTVTSM---TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSM----GTQRCDAGV 296 (301)
T ss_dssp EEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEE----EEEEESCEE
T ss_pred EEEEeCCCCcEEECCCC---CCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCC----CcccccceE
Confidence 99999999999999765 88999999999999999999988777778999999999999998743 467889998
Q ss_pred EEEe
Q 009910 357 VLVQ 360 (522)
Q Consensus 357 ~~~~ 360 (522)
+++.
T Consensus 297 ~~~~ 300 (301)
T 2vpj_A 297 CVLR 300 (301)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8875
No 6
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.6e-43 Score=347.55 Aligned_cols=270 Identities=19% Similarity=0.273 Sum_probs=234.2
Q ss_pred EEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCc
Q 009910 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (522)
Q Consensus 93 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 172 (522)
..+.+++.||++||... ...+++++||+.+++|..++.+ +.+|.+|+++.++++||++||... ....
T Consensus 10 ~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~~-~~~~ 76 (302)
T 2xn4_A 10 TPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAEL-----------PSRRCRAGMVYMAGLVFAVGGFNG-SLRV 76 (302)
T ss_dssp -----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCC-----------SSCCBSCEEEEETTEEEEESCBCS-SSBC
T ss_pred cccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccC-----------CcccccceEEEECCEEEEEeCcCC-Cccc
Confidence 34457889999999765 4578999999999999999763 346788999999999999999864 3456
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
+++++||+.+++|+.+++ +|.+|..|+++.++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..|
T Consensus 77 ~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~ 149 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVAN---MRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVA---PMNTRRSSV 149 (302)
T ss_dssp CCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEEC---CCSSCCBSC
T ss_pred cceEEECCCCCceeeCCC---CCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecC---CCCCcccCc
Confidence 789999999999999984 99999999999999999999999765 56899999999999999997 889999999
Q ss_pred EEEEECCcEEEEEcCCCCC--CCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEE
Q 009910 253 VAALYDDKNLLIFGGSSKS--KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~y 330 (522)
++++++++ ||++||.+.. ..++++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++|
T Consensus 150 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 225 (302)
T 2xn4_A 150 GVGVVGGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVY 225 (302)
T ss_dssp EEEEETTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEE
T ss_pred eEEEECCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC---ccccccccEEEECCEEEEECCCCCCcccceEEEE
Confidence 99999988 9999998654 3478999999999999999765 8899999999999999999999877778899999
Q ss_pred ECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 009910 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (522)
Q Consensus 331 d~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~y~~~~~~w~~~ 394 (522)
|+.+++|+.+..+ +.+|.+++++.++ ++||++||.++.. .+++++||+++++|...
T Consensus 226 d~~~~~W~~~~~~----~~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 226 DPTTNAWRQVADM----NMCRRNAGVCAVN----GLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp ETTTTEEEEECCC----SSCCBSCEEEEET----TEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred eCCCCCEeeCCCC----CCccccCeEEEEC----CEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 9999999998743 3678888888886 7799999986543 78999999999999876
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=5.9e-43 Score=347.47 Aligned_cols=263 Identities=17% Similarity=0.228 Sum_probs=235.6
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
.+.||++||... .+++++||+.+++|+.++++ +.+|.+|+++.++++||++||.. ....+++++
T Consensus 11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCP-----------FEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCSS---TTSEEEEETTTTEEEECCCC-----------SCCCBSCEEEEETTEEEEECCBS--SSBCCEEEE
T ss_pred cceEEEEeCCCC---CceEEEecCCCCCEecCCCC-----------CcccceeEEEEECCEEEEEeCCC--CCCcceEEE
Confidence 378999999765 78999999999999999763 34678899999999999999987 556789999
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (522)
||+.+++|+.+++ +|.+|..|+++.++++||++||.+.....++++++||+.+++|+.++ ++|.+|..|+++.+
T Consensus 75 ~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 75 YNVVKDSWYSKLG---PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEA 148 (306)
T ss_dssp EETTTTEEEEEEC---CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE
T ss_pred EeCCCCeEEECCC---CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEE
Confidence 9999999999984 99999999999999999999999855567899999999999999997 89999999999999
Q ss_pred CCcEEEEEcCCCCCCC----CCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 009910 258 DDKNLLIFGGSSKSKT----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 258 ~~~~lyv~GG~~~~~~----~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
+++ ||++||...... ++++++||+++++|+.++.+ |.+|..|+++.++++|||+||.+.....+++++||+.
T Consensus 149 ~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 888 999999876555 89999999999999999765 8899999999999999999998877678899999999
Q ss_pred CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC-CCCcEEEEEcccCCcccc
Q 009910 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-PSNQVEVLSIEKNESSMG 394 (522)
Q Consensus 334 ~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~y~~~~~~w~~~ 394 (522)
+++|+.+.. .+.+|.++++++++ ++|||+||.++. ..+++++||+++++|...
T Consensus 225 ~~~W~~~~~----~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 225 LNEWKMVSP----MPWKGVTVKCAAVG----SIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp TTEEEECCC----CSCCBSCCEEEEET----TEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred CCcEEECCC----CCCCccceeEEEEC----CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 999999874 34678889999886 779999998755 478999999999999875
No 8
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=5.9e-44 Score=356.82 Aligned_cols=292 Identities=20% Similarity=0.256 Sum_probs=247.2
Q ss_pred CCCccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCC--
Q 009910 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-- 110 (522)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~-- 110 (522)
.+|......+.||++||.. ...|++ .+++|...+. ..|.+|.+|+++.++++|||+||....
T Consensus 7 ~~r~~~~~~~~i~~~GG~~--------~~~yd~------~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 70 (318)
T 2woz_A 7 IPRHGMFVKDLILLVNDTA--------AVAYDP------MENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEE 70 (318)
T ss_dssp SCCCCCSEEEEEEEECSSE--------EEEEET------TTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC---
T ss_pred cccccceecchhhhccccc--------eEEECC------CCCceecccC--CccCCccceEEEEECCEEEEECCcccCcc
Confidence 4455555567899999932 234776 8999998542 345789999999999999999995311
Q ss_pred ----CCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCC-CCCCceeEEEEECCCCcE
Q 009910 111 ----GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD-SGSDRVSVWTFDTETECW 185 (522)
Q Consensus 111 ----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~~W 185 (522)
...+++++||+.+++|+.++++ +.+|..|++++++++|||+||... .....+++++||+.+++|
T Consensus 71 ~~~~~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 139 (318)
T 2woz_A 71 NKDQPLQSYFFQLDNVSSEWVGLPPL-----------PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139 (318)
T ss_dssp ----CCCBEEEEEETTTTEEEECSCB-----------SSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE
T ss_pred ccCCCccccEEEEeCCCCcEEECCCC-----------CccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCE
Confidence 1234599999999999999864 346788999999999999999874 345678999999999999
Q ss_pred EEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEE
Q 009910 186 SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIF 265 (522)
Q Consensus 186 ~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~ 265 (522)
+.+++ +|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.++ ++|.+|..|++++++++ |||+
T Consensus 140 ~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~ 212 (318)
T 2woz_A 140 SEVKN---LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGK-IVIA 212 (318)
T ss_dssp EEECC---CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEE
T ss_pred eECCC---CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCE-EEEE
Confidence 99984 99999999999999999999999766667899999999999999997 88999999999999988 9999
Q ss_pred cCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCC---------CCcCeEEEEECCCCc
Q 009910 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRHAETLIFDILKGE 336 (522)
Q Consensus 266 GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~---------~~~~~v~~yd~~~~~ 336 (522)
||.+.....+++++||+++++|+.+..+ |.+|..|+++.++++|||+||.+.. ...+++|+||+.+++
T Consensus 213 GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 213 GGVTEDGLSASVEAFDLKTNKWEVMTEF---PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EEEETTEEEEEEEEEETTTCCEEECCCC---SSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred cCcCCCCccceEEEEECCCCeEEECCCC---CCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 9998777788999999999999999765 8899999999999999999998642 346899999999999
Q ss_pred eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEc
Q 009910 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (522)
Q Consensus 337 W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~G 371 (522)
|+.+. +.+|.+|++++++ ++||++.
T Consensus 290 W~~~~------~~~r~~~~~~~~~----~~iyi~~ 314 (318)
T 2woz_A 290 WAGML------KEIRYASGASCLA----TRLNLFK 314 (318)
T ss_dssp EEEEE------SCCGGGTTCEEEE----EEEEGGG
T ss_pred ehhhc------ccccccccceeeC----CEEEEEE
Confidence 99982 3678889999997 7788764
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.5e-44 Score=358.04 Aligned_cols=285 Identities=15% Similarity=0.205 Sum_probs=242.4
Q ss_pred CCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcC------CCCCcc
Q 009910 41 SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES------GNGLLD 114 (522)
Q Consensus 41 ~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~------~~~~~~ 114 (522)
.+.|+++|| ++ ...|++ .+++|+..+ .+.|.+|.+|++++++++|||+||.. .....+
T Consensus 4 ~~~l~~~GG--~~------~~~yd~------~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 67 (315)
T 4asc_A 4 QDLIFMISE--EG------AVAYDP------AANECYCAS--LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSA 67 (315)
T ss_dssp EEEEEEEET--TE------EEEEET------TTTEEEEEE--CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEE
T ss_pred ceEEEEEcC--Cc------eEEECC------CCCeEecCC--CCCCCCccceEEEEECCEEEEEcCcccCCCCCcccccc
Confidence 456999999 11 233676 899999733 23366899999999999999999962 122346
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCC--CCCCceeEEEEECCCCcEEEeeecC
Q 009910 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD--SGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
++++||+.+++|+.++++ +.+|.+|+++.++++|||+||... .....+++++||+.+++|+.+++
T Consensus 68 ~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~-- 134 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPL-----------PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP-- 134 (315)
T ss_dssp EEEEEETTTTEEEECCCB-----------SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--
T ss_pred ceEEecCCCCeEEECCCC-----------CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--
Confidence 799999999999999874 356789999999999999999763 34567899999999999999984
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCC
Q 009910 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272 (522)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~ 272 (522)
+|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.++ ++|.+|..|++++++++ |||+||.+...
T Consensus 135 -~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~ 209 (315)
T 4asc_A 135 -LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGR-IIVAAGVTDTG 209 (315)
T ss_dssp -CSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTE-EEEEEEECSSS
T ss_pred -CCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCE-EEEEeccCCCC
Confidence 99999999999999999999999666678999999999999999997 89999999999999988 99999998777
Q ss_pred CCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCC---------CCcCeEEEEECCCCceEEeccC
Q 009910 273 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRHAETLIFDILKGEWSVAITS 343 (522)
Q Consensus 273 ~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~ 343 (522)
..+++++||+++++|+.+..+ |.+|..|+++.++++|||+||.+.. ...+++++||+++++|+.+.
T Consensus 210 ~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-- 284 (315)
T 4asc_A 210 LTSSAEVYSITDNKWAPFEAF---PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL-- 284 (315)
T ss_dssp EEEEEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE--
T ss_pred ccceEEEEECCCCeEEECCCC---CCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc--
Confidence 788999999999999999765 8999999999999999999998531 24578999999999999983
Q ss_pred CCCCCCCCCCcEEEEEeeCCccEEEEEcC
Q 009910 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (522)
Q Consensus 344 p~~~~~~r~~~~~~~~~~~~~~~l~v~GG 372 (522)
+.+|.++++++++ ++||++..
T Consensus 285 ----~~~r~~~~~~~~~----~~l~v~~~ 305 (315)
T 4asc_A 285 ----REIAYAAGATFLP----VRLNVLRL 305 (315)
T ss_dssp ----SCSSCCSSCEEEE----EEECGGGS
T ss_pred ----cCCcCccceEEeC----CEEEEEEe
Confidence 2567888999987 77887765
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=344.27 Aligned_cols=267 Identities=19% Similarity=0.268 Sum_probs=237.5
Q ss_pred ECCEEEEEcC-cCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeE
Q 009910 97 IGNKMIVVGG-ESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 97 ~~~~iyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 175 (522)
++++||++|| .......+++++||+.+++|..++.+ +.+|.+|+++..+++||++||... ....+++
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~l~v~GG~~~-~~~~~~~ 80 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI-----------TRKRRYVASVSLHDRIYVIGGYDG-RSRLSSV 80 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCC-----------SSCCBSCEEEEETTEEEEECCBCS-SCBCCCE
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCC-----------ChhhccccEEEECCEEEEEcCCCC-CccCceE
Confidence 6789999999 55566789999999999999999863 336788999999999999999863 4467889
Q ss_pred EEEECCCCc---EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 176 WTFDTETEC---WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 176 ~~yd~~t~~---W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
++||+.+++ |+.++ ++|.+|..|+++.++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..|
T Consensus 81 ~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~ 153 (301)
T 2vpj_A 81 ECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLG---DMQTAREGA 153 (301)
T ss_dssp EEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEE---ECSSCCBSC
T ss_pred EEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECC---CCCCCcccc
Confidence 999999999 99997 499999999999999999999999865 46899999999999999997 789999999
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEEC
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 332 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~ 332 (522)
++++++++ ||++||.+.....+++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.+.....+++++||+
T Consensus 154 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 154 GLVVASGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp EEEEETTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred eEEEECCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCC---CcccccceEEEECCEEEEEeCCCCCcccceEEEEeC
Confidence 99999888 99999998877889999999999999999665 889999999999999999999987767899999999
Q ss_pred CCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC-CCcEEEEEcccCCcccc
Q 009910 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (522)
Q Consensus 333 ~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~y~~~~~~w~~~ 394 (522)
.+++|+.+.. .+.+|..|+++.++ ++||++||.++.. .+++++||+++++|...
T Consensus 230 ~~~~W~~~~~----~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 230 RTDSWTTVTS----MTTPRCYVGATVLR----GRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp TTTEEEEECC----CSSCCBSCEEEEET----TEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred CCCcEEECCC----CCCcccceeEEEEC----CEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 9999999874 34678889988886 6799999987544 68999999999999875
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=343.82 Aligned_cols=262 Identities=16% Similarity=0.216 Sum_probs=227.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccC----C-CCCCc
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT----D-SGSDR 172 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~----~-~~~~~ 172 (522)
++.||++|| +++++||+.+++|.. +++ ..+.+|.+|++++++++|||+||.. . .....
T Consensus 4 ~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~---------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 4 QDLIFMISE-------EGAVAYDPAANECYC-ASL---------SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEEEEET-------TEEEEEETTTTEEEE-EEC---------CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred ceEEEEEcC-------CceEEECCCCCeEec-CCC---------CCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 467999999 689999999999987 442 1234788999999999999999973 1 22234
Q ss_pred eeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCC--CCCccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG--KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
+++++||+.+++|+.+++ +|.+|.+|+++.++++||++||.+. ....++++++||+.+++|++++ ++|.+|.
T Consensus 67 ~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~ 140 (315)
T 4asc_A 67 AYFLQFDHLDSEWLGMPP---LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVY 140 (315)
T ss_dssp EEEEEEETTTTEEEECCC---BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCB
T ss_pred cceEEecCCCCeEEECCC---CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCccc
Confidence 569999999999999874 9999999999999999999999862 3467899999999999999997 8999999
Q ss_pred ceEEEEECCcEEEEEcCC-CCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEE
Q 009910 251 NHVAALYDDKNLLIFGGS-SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~ 329 (522)
.|++++++++ |||+||. .....++++++||+.+++|+.++.+ |.+|..|+++.++++|||+||.+.....+++++
T Consensus 141 ~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 141 GHTVLSHMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp SCEEEEETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECSSSEEEEEEE
T ss_pred ceeEEEECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCCCCccceEEE
Confidence 9999999998 9999999 5566789999999999999999765 889999999999999999999987777889999
Q ss_pred EECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC----------CCCCcEEEEEcccCCcccc
Q 009910 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG 394 (522)
Q Consensus 330 yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~y~~~~~~w~~~ 394 (522)
||+.+++|+.++. ++.+|.+|+++.++ ++|||+||... ...+++++||+++++|+..
T Consensus 217 yd~~~~~W~~~~~----~p~~r~~~~~~~~~----~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 217 YSITDNKWAPFEA----FPQERSSLSLVSLV----GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EETTTTEEEEECC----CSSCCBSCEEEEET----TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EECCCCeEEECCC----CCCcccceeEEEEC----CEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9999999999874 34788899999886 68999999853 2367899999999999886
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=6.8e-42 Score=347.35 Aligned_cols=281 Identities=17% Similarity=0.222 Sum_probs=228.4
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcC--CCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 009910 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (522)
Q Consensus 84 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv 161 (522)
++|.+|.+|++++++++|||+||... +++++||+. +++|+.++++ +..+|.+|++++++++|||
T Consensus 5 ~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~----------p~~~R~~~~~~~~~~~lyv 70 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAF----------PGGPRDQATSAFIDGNLYV 70 (357)
T ss_dssp CCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCC----------TTCCCBSCEEEEETTEEEE
T ss_pred CCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCC----------CCCcCccceEEEECCEEEE
Confidence 78999999999999999999999764 589999998 4899999873 4357889999999999999
Q ss_pred EcccCC----CCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEECCEEEEEcccCCCC----------------
Q 009910 162 VGGKTD----SGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKR---------------- 220 (522)
Q Consensus 162 ~GG~~~----~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~---------------- 220 (522)
+||... .....+++|+||+.+++|+.+++ ++ .+|.+|+++.++++|||+||.+...
T Consensus 71 ~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 147 (357)
T 2uvk_A 71 FGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMS---HAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDST 147 (357)
T ss_dssp ECCEEECTTSCEEECCCEEEEETTTTEEEECSC---CCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHH
T ss_pred EcCCCCCCCccceeeccEEEEeCCCCcEEECCC---CCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCccc
Confidence 999822 23346789999999999999985 55 9999999999999999999986431
Q ss_pred -----------------CccCcEEEEEcCCCcEEEeecCCCCCCCCcc-eEEEEECCcEEEEEcCCCCC-CCCCcEEEEE
Q 009910 221 -----------------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN-HVAALYDDKNLLIFGGSSKS-KTLNDLYSLD 281 (522)
Q Consensus 221 -----------------~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd 281 (522)
..++++++||+.+++|+.+. ++|.+|.. |++++++++ |||+||.+.. ...+++++||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~~d 223 (357)
T 2uvk_A 148 AIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDK-TWLINGEAKPGLRTDAVFELD 223 (357)
T ss_dssp HHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTE-EEEECCEEETTEECCCEEEEE
T ss_pred chhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCE-EEEEeeecCCCcccCceEEEE
Confidence 24689999999999999997 77876555 899999888 9999998543 3578899998
Q ss_pred c--CCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCC-----------------CCcCeEEEEECCCCceEEecc
Q 009910 282 F--ETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-----------------KRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 282 ~--~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~ 342 (522)
+ ++++|+.+..+ ..|.+|.+|+++.++++|||+||.+.. ....++++||+.+++|+.+..
T Consensus 224 ~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 302 (357)
T 2uvk_A 224 FTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE 302 (357)
T ss_dssp CC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred ecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence 7 89999999876 234557788899999999999996432 233678999999999999875
Q ss_pred CCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCC--CCcEEEEEcccCCcccc
Q 009910 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLSIEKNESSMG 394 (522)
Q Consensus 343 ~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~--~~~v~~y~~~~~~w~~~ 394 (522)
+ +.+|.+|+++.++ ++|||+||.+... .++|++|++++++|...
T Consensus 303 ~----p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 303 L----SQGRAYGVSLPWN----NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp C----SSCCBSSEEEEET----TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred C----CCCcccceeEEeC----CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 4 3678889988876 7899999986543 68999999999998765
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=9.7e-41 Score=333.50 Aligned_cols=271 Identities=17% Similarity=0.228 Sum_probs=229.2
Q ss_pred CCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccc
Q 009910 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGK 165 (522)
Q Consensus 86 p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 165 (522)
..+|.++.. .+.||++||. ++++||+.+++|... ++ ..+.+|.+|+++..+++||++||.
T Consensus 6 ~~~r~~~~~---~~~i~~~GG~-------~~~~yd~~~~~W~~~-~~---------~~~~~r~~~~~~~~~~~lyv~GG~ 65 (318)
T 2woz_A 6 DIPRHGMFV---KDLILLVNDT-------AAVAYDPMENECYLT-AL---------AEQIPRNHSSIVTQQNQVYVVGGL 65 (318)
T ss_dssp SSCCCCCSE---EEEEEEECSS-------EEEEEETTTTEEEEE-EE---------CTTSCSSEEEEECSSSCEEEEESS
T ss_pred cccccccee---cchhhhcccc-------ceEEECCCCCceecc-cC---------CccCCccceEEEEECCEEEEECCc
Confidence 356666543 3689999993 489999999999984 32 223467889999999999999996
Q ss_pred CCC-----CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCC-CCCccCcEEEEEcCCCcEEEe
Q 009910 166 TDS-----GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSLTWLPL 239 (522)
Q Consensus 166 ~~~-----~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~ 239 (522)
... ....+++++||+.+++|+.++ ++|.+|..|+++.++++||++||... ....++++++||+.+++|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 142 (318)
T 2woz_A 66 YVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142 (318)
T ss_dssp CC-------CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE
T ss_pred ccCccccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC
Confidence 421 122346999999999999997 49999999999999999999999873 345789999999999999999
Q ss_pred ecCCCCCCCCcceEEEEECCcEEEEEcCCC-CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEccc
Q 009910 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGG 318 (522)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~ 318 (522)
. ++|.+|..|++++++++ |||+||.. ....++++++||+.+++|+.++.+ |.+|..|+++.++++|||+||.
T Consensus 143 ~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~ 215 (318)
T 2woz_A 143 K---NLPIKVYGHNVISHNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIHKGKIVIAGGV 215 (318)
T ss_dssp C---CCSSCEESCEEEEETTE-EEEECCEESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEE
T ss_pred C---CCCCcccccEEEEECCE-EEEEcCCCCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEEECCEEEEEcCc
Confidence 7 89999999999999888 99999984 445688999999999999999765 8999999999999999999998
Q ss_pred CCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC----------CCCCcEEEEEccc
Q 009910 319 SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEK 388 (522)
Q Consensus 319 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~y~~~~ 388 (522)
+.....+++++||+.+++|+.+.. .|.+|..|+++.++ ++||++||... ...+++++||+++
T Consensus 216 ~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 216 TEDGLSASVEAFDLKTNKWEVMTE----FPQERSSISLVSLA----GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp ETTEEEEEEEEEETTTCCEEECCC----CSSCCBSCEEEEET----TEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred CCCCccceEEEEECCCCeEEECCC----CCCcccceEEEEEC----CEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 876677899999999999999874 34678889998886 68999999864 2368999999999
Q ss_pred CCcccc
Q 009910 389 NESSMG 394 (522)
Q Consensus 389 ~~w~~~ 394 (522)
++|...
T Consensus 288 ~~W~~~ 293 (318)
T 2woz_A 288 KEWAGM 293 (318)
T ss_dssp TEEEEE
T ss_pred CEehhh
Confidence 999875
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=4.6e-40 Score=333.84 Aligned_cols=278 Identities=19% Similarity=0.250 Sum_probs=219.7
Q ss_pred ccCCCCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEeeecCCCC-CCccceEEEEECCEEEEEcCc-C----C
Q 009910 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGE-S----G 109 (522)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~p-~~R~~~~~~~~~~~iyv~GG~-~----~ 109 (522)
+.+..++.||++||...+ ....|++.. .+++|+.++ ++| .+|.+|++++++++|||+||. . .
T Consensus 14 ~~~~~~~~iyv~GG~~~~-----~~~~~d~~~----~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~ 81 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGSAGT-----AWYKLDTQA----KDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGL 81 (357)
T ss_dssp EEEEETTEEEEECGGGTT-----CEEEEETTS----SSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSC
T ss_pred EEEEECCEEEEEeCcCCC-----eEEEEcccc----CCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCcc
Confidence 444458889999995432 122344411 368999998 788 899999999999999999998 2 2
Q ss_pred CCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC--------------------
Q 009910 110 NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-------------------- 169 (522)
Q Consensus 110 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-------------------- 169 (522)
...++++++||+.+++|+.++++ ++.+|.+|++++.+++|||+||.+...
T Consensus 82 ~~~~~~v~~yd~~~~~W~~~~~~----------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (357)
T 2uvk_A 82 TQVFNDVHKYNPKTNSWVKLMSH----------APMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK 151 (357)
T ss_dssp EEECCCEEEEETTTTEEEECSCC----------CSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ceeeccEEEEeCCCCcEEECCCC----------CCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhh
Confidence 24578999999999999999884 346788999999999999999986421
Q ss_pred -------------CCceeEEEEECCCCcEEEeeecCCCCCCCcc-eEEEEECCEEEEEcccCCCCCccCcEEEEEc--CC
Q 009910 170 -------------SDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVRASSVLILFGGEDGKRRKLNDLHMFDL--KS 233 (522)
Q Consensus 170 -------------~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~--~t 233 (522)
...+++++||+.+++|+.+++ +|.+|.. |+++.++++||||||.+..+..++++++||+ ++
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~ 228 (357)
T 2uvk_A 152 INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE---SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN 228 (357)
T ss_dssp HHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE---CSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---
T ss_pred hhhhhccccccccCCcccEEEEeCCCCcEEECCC---CCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCC
Confidence 235789999999999999985 8876554 9999999999999998766566889999987 89
Q ss_pred CcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCC-----------------CCCCCcEEEEEcCCCcEEEeeeCCCC
Q 009910 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-----------------SKTLNDLYSLDFETMIWTRIKIRGFH 296 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~-----------------~~~~~~v~~yd~~~~~W~~~~~~~~~ 296 (522)
++|+.+... +.|.+|..|++++++++ |||+||.+. ...++++++||+++++|+.+..+
T Consensus 229 ~~W~~~~~~-~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--- 303 (357)
T 2uvk_A 229 LKWNKLAPV-SSPDGVAGGFAGISNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL--- 303 (357)
T ss_dssp CEEEECCCS-STTTCCBSCEEEEETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC---
T ss_pred CcEEecCCC-CCCcccccceEEEECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC---
Confidence 999999732 23444668889999998 999999642 22346899999999999999876
Q ss_pred CCCccceEEEEECCEEEEEcccCCCC-CcCeEEEEECCCCceEEeccC
Q 009910 297 PSPRAGCCGVLCGTKWYIAGGGSRKK-RHAETLIFDILKGEWSVAITS 343 (522)
Q Consensus 297 p~~r~~~~~~~~~~~iyi~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~ 343 (522)
|.+|.+|+++.++++|||+||.+... ..+++++|++++++|....+.
T Consensus 304 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 304 SQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp SSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred CCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 89999999999999999999987543 468999999999999997743
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=3.5e-38 Score=346.50 Aligned_cols=283 Identities=16% Similarity=0.189 Sum_probs=231.3
Q ss_pred CCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcc-cccccCCCCCCCCCCCccceEEEEE--CCEEE
Q 009910 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAS-SKLYLSPSSLPLKIPACRGHSLISW--GKKVL 160 (522)
Q Consensus 84 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iy 160 (522)
..|.+|++|+++ ++++|||+||... ..++++++||+.+++|+.++ ++.. ...+.+|.+|+++++ +++||
T Consensus 384 ~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~------~~~p~~R~~hs~~~~~~~~~ly 455 (695)
T 2zwa_A 384 CPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSS------SEVPVARMCHTFTTISRNNQLL 455 (695)
T ss_dssp CTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCC------SCCCCCCBSCEEEEETTTTEEE
T ss_pred CCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCC------CCCCccccceEEEEEccCCEEE
Confidence 556667766544 8999999999877 77899999999999999998 4210 013557889999999 99999
Q ss_pred EEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEe
Q 009910 161 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (522)
Q Consensus 161 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 239 (522)
|+||.+......+++|+||+.+++|+.++ ++|.+|.+|+++++ +++||||||.+... ++++||+.+++|+.+
T Consensus 456 v~GG~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 456 LIGGRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDV 528 (695)
T ss_dssp EECCBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEEC
T ss_pred EEcCCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEc
Confidence 99999876657889999999999999997 49999999999996 99999999997763 899999999999999
Q ss_pred ecCCCCCCCCcceEEEEEC---CcEEEEEcCCCCC--CCCCcEEEEEcCCCc------EEEeeeCCCCCCCccceEEEEE
Q 009910 240 HCTGTGPSPRSNHVAALYD---DKNLLIFGGSSKS--KTLNDLYSLDFETMI------WTRIKIRGFHPSPRAGCCGVLC 308 (522)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~~---~~~lyv~GG~~~~--~~~~~v~~yd~~~~~------W~~~~~~~~~p~~r~~~~~~~~ 308 (522)
...+.+|.+|..|++++++ ++ |||+||.+.. ..++++++||+.+++ |+.+..+ ++.+|.+|+++.+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~ 605 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYI 605 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEE
T ss_pred cCCCCCCCcccceeEEEEeCCCCE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEe
Confidence 8766799999999988876 55 9999998543 568999999999999 8999874 2588999999999
Q ss_pred C-CEEEEEcccCCCC---CcCeEEEEECCCCceEEeccCCCCC----CCCCCCcEEEEEeeCCccEEEEEcCCCC-----
Q 009910 309 G-TKWYIAGGGSRKK---RHAETLIFDILKGEWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKK----- 375 (522)
Q Consensus 309 ~-~~iyi~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~~----~~~r~~~~~~~~~~~~~~~l~v~GG~~~----- 375 (522)
+ ++|||+||.+... ..+++++||+.+++|+.+.. |... ...+.+|+++.+. .++|||+||...
T Consensus 606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~-p~~~~~~~~p~~~gh~~~~~~---~g~i~v~GGg~~cfsfG 681 (695)
T 2zwa_A 606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPI-SRRIWEDHSLMLAGFSLVSTS---MGTIHIIGGGATCYGFG 681 (695)
T ss_dssp ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCC-CHHHHHHSCCCCSSCEEECC------CEEEECCEEECTTSC
T ss_pred CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeec-cccccCCCCccceeeeEEEeC---CCEEEEEeCCccCcCcc
Confidence 8 9999999987543 57899999999999996532 2111 1256788888776 236999999532
Q ss_pred CCCCcEEEEEccc
Q 009910 376 EPSNQVEVLSIEK 388 (522)
Q Consensus 376 ~~~~~v~~y~~~~ 388 (522)
...|++|.+|+..
T Consensus 682 t~~n~i~~ldl~~ 694 (695)
T 2zwa_A 682 SVTNVGLKLIAIA 694 (695)
T ss_dssp EEECCCEEEEECC
T ss_pred ccccceEEEEEEc
Confidence 2256889888764
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=2.5e-35 Score=323.82 Aligned_cols=268 Identities=20% Similarity=0.201 Sum_probs=216.6
Q ss_pred CCCceEeeCCCCCCCcccccccCcccCCCCCCCCCceEEee-e--cCCCCCCccceEEEEE--CCEEEEEcCcCCCC-Cc
Q 009910 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLS-I--AGDKPIPRFNHAAAVI--GNKMIVVGGESGNG-LL 113 (522)
Q Consensus 40 ~~~~i~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~-~--~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~-~~ 113 (522)
.++.||++||... ........|++ .+++|+.++ . .+.+|.+|.+|+++++ +++|||+||..... .+
T Consensus 396 ~~~~iyv~GG~~~--~~~~~v~~yd~------~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~ 467 (695)
T 2zwa_A 396 AGNDVFYMGGSNP--YRVNEILQLSI------HYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGL 467 (695)
T ss_dssp CSSCEEEECCBSS--SBCCCEEEEEE------CSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBC
T ss_pred ECCEEEEECCCCC--CCcCcEEEEEC------CCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCcc
Confidence 6788999999654 22222334555 889999998 3 3568999999999999 99999999987654 68
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
+++|+||+.+++|+.++++ +.+|.+|+++++ +++|||+||.+... ++++||+.+++|+.+++.+
T Consensus 468 ~dv~~yd~~t~~W~~~~~~-----------p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 468 SDNWIFDMKTREWSMIKSL-----------SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp CCCEEEETTTTEEEECCCC-----------SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSS
T ss_pred ccEEEEeCCCCcEEECCCC-----------CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCC
Confidence 9999999999999999863 347789999997 99999999987544 8999999999999999777
Q ss_pred CCCCCCcceEEEEEC---CEEEEEcccCCCC-CccCcEEEEEcCCCc------EEEeecCCCC-CCCCcceEEEEEC-Cc
Q 009910 193 DIPVARSGHTVVRAS---SVLILFGGEDGKR-RKLNDLHMFDLKSLT------WLPLHCTGTG-PSPRSNHVAALYD-DK 260 (522)
Q Consensus 193 ~~p~~r~~~~~~~~~---~~iyv~GG~~~~~-~~~~~v~~yd~~t~~------W~~~~~~g~~-p~~r~~~~~~~~~-~~ 260 (522)
++|.+|.+|++++++ ++|||+||....+ ..++++++||+.+++ |+.+. .+ +.+|.+|++++++ ++
T Consensus 533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~---~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL---QHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEE---ECGGGCCBSCEEEEEETTE
T ss_pred CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcC---CCCCCCcccceEEEeCCCE
Confidence 799999999988877 8999999996553 578999999999999 89887 34 5899999999999 66
Q ss_pred EEEEEcCCCCCC---CCCcEEEEEcCCCcEEEeeeCCC----CCCCccceEEEEECC-EEEEEcccCC----CCCcCeEE
Q 009910 261 NLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGF----HPSPRAGCCGVLCGT-KWYIAGGGSR----KKRHAETL 328 (522)
Q Consensus 261 ~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~----~p~~r~~~~~~~~~~-~iyi~GG~~~----~~~~~~v~ 328 (522)
|||+||.+... ..+++++||+++++|+.+..... ++..+.+|+++.+++ +|||+||... ....+++|
T Consensus 610 -iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~ 688 (695)
T 2zwa_A 610 -LLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGL 688 (695)
T ss_dssp -EEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCE
T ss_pred -EEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceE
Confidence 99999986543 68899999999999996543211 123567888888766 9999999642 23456888
Q ss_pred EEECCC
Q 009910 329 IFDILK 334 (522)
Q Consensus 329 ~yd~~~ 334 (522)
.+|+..
T Consensus 689 ~ldl~~ 694 (695)
T 2zwa_A 689 KLIAIA 694 (695)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 888754
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=4e-35 Score=321.40 Aligned_cols=339 Identities=13% Similarity=0.059 Sum_probs=247.0
Q ss_pred ccccccccccccCCCCCCCC----ccCCC-CCceEeeCCCCCCCc-----ccccccCcccCCCCCCCCCceEEeeecCCC
Q 009910 16 KVQLSDSAQAIRSPIRPPKR----NSNPN-SECVAPSSNHADDRD-----CECTIAGPEVSNGTSGNSENWMVLSIAGDK 85 (522)
Q Consensus 16 ~~~~~d~~~~~~~p~~~~~r----~~~~~-~~~i~~~GG~~~~~~-----~~~~~~~~~~~~~~~~~~~~W~~l~~~~~~ 85 (522)
.++.+|+..+.|.++.+.++ .++.. +++||++||...+.. .......|++ .+++|+.++ .+
T Consensus 167 ~~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~------~t~~w~~~~---~~ 237 (656)
T 1k3i_A 167 SYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDP------STGIVSDRT---VT 237 (656)
T ss_dssp CCCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECT------TTCCBCCCE---EE
T ss_pred ccccCCCCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeC------CCCcEEeCc---cc
Confidence 47889999999986554433 22222 778999999554310 1112334565 899999997 67
Q ss_pred CCCccceE--EEE-ECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEE
Q 009910 86 PIPRFNHA--AAV-IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLL 161 (522)
Q Consensus 86 p~~R~~~~--~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv 161 (522)
|.+|..|+ +++ .+++||++||... +++++||+.+++|++++++ +.+|..|+++++ +++||+
T Consensus 238 ~~~~~~~~~~~~~~~~g~lyv~GG~~~----~~v~~yd~~t~~W~~~~~~-----------~~~R~~~s~~~~~dg~iyv 302 (656)
T 1k3i_A 238 VTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDM-----------QVARGYQSSATMSDGRVFT 302 (656)
T ss_dssp ECSCCCSSCEEEECTTSCEEEECSSST----TCEEEEEGGGTEEEECCCC-----------SSCCSSCEEEECTTSCEEE
T ss_pred CCCCCCccccccCCCCCCEEEeCCCCC----CceEEecCcCCceeECCCC-----------CccccccceEEecCCeEEE
Confidence 77776554 343 5799999999764 3799999999999999864 336788999999 999999
Q ss_pred EcccCCCCCCceeEEEEECCCCcEEEeeec--CCCCCCCcceEEEEECCEEEEEcccCCCC---CccCcEEEEEcCCCcE
Q 009910 162 VGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKR---RKLNDLHMFDLKSLTW 236 (522)
Q Consensus 162 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~t~~W 236 (522)
+||........+++++||+.+++|+.++.. .+++..|.. +++..++++|++||.++.. ...++++.||+.+++|
T Consensus 303 ~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w 381 (656)
T 1k3i_A 303 IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 381 (656)
T ss_dssp ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred EeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcce
Confidence 999655555678899999999999998422 135555543 5556789999999986531 2467899999999998
Q ss_pred EEeecCCCC----CCCCcceEEEE---ECCcEEEEEcCCCC---CCCCC---cEEEEEcCCCcEEEeeeCCCCCCCccce
Q 009910 237 LPLHCTGTG----PSPRSNHVAAL---YDDKNLLIFGGSSK---SKTLN---DLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (522)
Q Consensus 237 ~~~~~~g~~----p~~r~~~~~~~---~~~~~lyv~GG~~~---~~~~~---~v~~yd~~~~~W~~~~~~~~~p~~r~~~ 303 (522)
......... +.++..+++++ ++++ ||++||... ...++ .+++||+++++|+.+. .+.+|.+|..|
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~ 459 (656)
T 1k3i_A 382 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFH 459 (656)
T ss_dssp EEEEEECEETTEECCCCBTCEEEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSC
T ss_pred eecCCccccccccCCCCCCCceEeccCCCCe-EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccC
Confidence 865321111 22344556654 3565 999999642 33445 7899999999999986 12348999999
Q ss_pred EEEEE-CCEEEEEcccCC------CCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC-
Q 009910 304 CGVLC-GTKWYIAGGGSR------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK- 375 (522)
Q Consensus 304 ~~~~~-~~~iyi~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~- 375 (522)
+++.+ +++|||+||.+. .....++++||+.+++|+.+.. ++.+|..|+++++-.+ ++|||+||...
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~----~~~~R~~hs~a~ll~d--g~v~v~GG~~~~ 533 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP----NSIVRVYHSISLLLPD--GRVFNGGGGLCG 533 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC----CSSCCCTTEEEEECTT--SCEEEEECCCCT
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC----CCCccccccHhhcCCC--cEEEecCCCCCC
Confidence 99888 999999999753 2456789999999999999773 3478999998877322 45999999632
Q ss_pred CC---CCcEEEEEcc
Q 009910 376 EP---SNQVEVLSIE 387 (522)
Q Consensus 376 ~~---~~~v~~y~~~ 387 (522)
.. .-++++|.|.
T Consensus 534 ~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 534 DCTTNHFDAQIFTPN 548 (656)
T ss_dssp TCSCCCCEEEEEECG
T ss_pred CCCCCeeEEEEEeCh
Confidence 11 3467777764
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=5.3e-34 Score=312.44 Aligned_cols=313 Identities=12% Similarity=0.049 Sum_probs=231.8
Q ss_pred CCCCceEEeeecCCCCCCccceEEEEE--CCEEEEEcCcCCCC------CcccEEEEEcCCCcEEEcccccccCCCCCCC
Q 009910 71 GNSENWMVLSIAGDKPIPRFNHAAAVI--GNKMIVVGGESGNG------LLDDVQVLNFDRFSWTAASSKLYLSPSSLPL 142 (522)
Q Consensus 71 ~~~~~W~~l~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 142 (522)
+.+++|+.++ ++ ||..++++++ +++|||+||..... ..+++++||+.+++|+.++.+.
T Consensus 173 p~~~~W~~~~---~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--------- 238 (656)
T 1k3i_A 173 PGLGRWGPTI---DL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--------- 238 (656)
T ss_dssp TTSCEEEEEE---EC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------
T ss_pred CCCCeeeeec---cC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---------
Confidence 4889999987 44 4466667777 89999999976432 2457999999999999988742
Q ss_pred CCCC-ccceEEE-EECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCC
Q 009910 143 KIPA-CRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGK 219 (522)
Q Consensus 143 ~~~~-r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~ 219 (522)
.++ ...++++ ..+++||++||.... ++++||+.+++|+.++ +||.+|..|+++++ +++||++||....
T Consensus 239 -~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~ 309 (656)
T 1k3i_A 239 -TKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSG 309 (656)
T ss_dssp -CSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCS
T ss_pred -CCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccC
Confidence 222 2233344 358999999998642 6999999999999987 49999999999999 9999999996544
Q ss_pred CCccCcEEEEEcCCCcEEEeecCC--CCCCCCcceEEEEECCcEEEEEcCCCCC----CCCCcEEEEEcCCCcEEEeeeC
Q 009910 220 RRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETMIWTRIKIR 293 (522)
Q Consensus 220 ~~~~~~v~~yd~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~~ 293 (522)
...++++++||+.+++|+.++..+ +++.+|.. +++..+++ +|++||.++. ...+++++||++++.|......
T Consensus 310 ~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~ 387 (656)
T 1k3i_A 310 GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 387 (656)
T ss_dssp SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred CcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCc
Confidence 457899999999999999984321 34445443 44456777 9999998653 2467899999999998765432
Q ss_pred CCC----CCCccceEEEE---ECCEEEEEcccCC---CCCcC---eEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEe
Q 009910 294 GFH----PSPRAGCCGVL---CGTKWYIAGGGSR---KKRHA---ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQ 360 (522)
Q Consensus 294 ~~~----p~~r~~~~~~~---~~~~iyi~GG~~~---~~~~~---~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~ 360 (522)
... +.++..++++. .+++||++||... ....+ .+++||+.+++|+.+.. ..++.+|..++++++.
T Consensus 388 ~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~mp~~R~~~~~~~l~ 465 (656)
T 1k3i_A 388 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS--NGLYFARTFHTSVVLP 465 (656)
T ss_dssp CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT--TCCSSCCBSCEEEECT
T ss_pred cccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc--CCCCCCcccCCeEECC
Confidence 111 11344455554 4899999999643 22334 78999999999998762 2445788889988883
Q ss_pred eCCccEEEEEcCCCC-------CCCCcEEEEEcccCCcccc--------ccCCC-CCCCCceEEeecCC
Q 009910 361 HKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESSMG--------RRSTP-NAKGPGQLLFEKRS 413 (522)
Q Consensus 361 ~~~~~~l~v~GG~~~-------~~~~~v~~y~~~~~~w~~~--------~~~~~-~~~~~~~~~fgg~~ 413 (522)
.++|||+||... ...+++++||+++++|+.. .|+++ ...+.+++++||..
T Consensus 466 ---~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 466 ---DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp ---TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred ---CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 256999999752 2378999999999999764 34322 23578899999963
No 19
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.32 E-value=0.0009 Score=65.76 Aligned_cols=252 Identities=9% Similarity=-0.003 Sum_probs=142.1
Q ss_pred CCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcE-EEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcc
Q 009910 87 IPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSW-TAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGG 164 (522)
Q Consensus 87 ~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG 164 (522)
.....+.++..++++|+.... .+.+.++|+.+.+- ..++. .. .-+.++. .++++|+...
T Consensus 42 lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~----------~~----~p~~i~~~~~g~lyv~~~ 102 (328)
T 3dsm_A 42 LGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITG----------FT----SPRYIHFLSDEKAYVTQI 102 (328)
T ss_dssp CBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEEC----------CS----SEEEEEEEETTEEEEEEB
T ss_pred cCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCC----------CC----CCcEEEEeCCCeEEEEEC
Confidence 334456677789999998742 36799999998765 33322 11 1133333 5789999864
Q ss_pred cCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCC
Q 009910 165 KTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG 243 (522)
Q Consensus 165 ~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 243 (522)
. ...+.++|+.+.+-...-+.+... ....-+.++..++++|+..- ...+.+.++|+++.+....-..+
T Consensus 103 ~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-----~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 103 W------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW-----SYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp S------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC-----TTCCEEEEEETTTTEEEEEEECS
T ss_pred C------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC-----CCCCEEEEEECCCCeEEEEEEcC
Confidence 3 245999999998755322212100 00022344447899999841 02356999999998765543222
Q ss_pred CCCCCCcceEEEEECCcEEEEEcCCCCCC-----CCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEc
Q 009910 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSK-----TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAG 316 (522)
Q Consensus 244 ~~p~~r~~~~~~~~~~~~lyv~GG~~~~~-----~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~G 316 (522)
..| +.++.-.+..+|+........ ..+.++++|+++.+....-.. |....-..++.. ++.+|+..
T Consensus 172 ~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 172 IQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp SCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEEEECTTSCEEEEES
T ss_pred CCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec---CCCCCceeEEEecCCCEEEEEc
Confidence 222 233344444477765322111 136799999998876643332 222222344444 56788875
Q ss_pred ccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 317 GGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+ .++++|+.+.+.......+ ........+++.. +.+.||+....+-...+.|.+||++ .+
T Consensus 244 ~--------~v~~~d~~t~~~~~~~~~~----~~~~~p~gi~vdp-~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 244 N--------DIWRMPVEADRVPVRPFLE----FRDTKYYGLTVNP-NNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp S--------SEEEEETTCSSCCSSCSBC----CCSSCEEEEEECT-TTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred c--------EEEEEECCCCceeeeeeec----CCCCceEEEEEcC-CCCeEEEEcccccccCCEEEEECCC-CC
Confidence 4 5999999887753211111 1112233344542 2356888763222234579999988 44
No 20
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.04 E-value=0.0028 Score=59.17 Aligned_cols=162 Identities=18% Similarity=0.060 Sum_probs=105.8
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEE
Q 009910 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (522)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 227 (522)
+-+.+...++.+|+-.|..+ .+.+.++|+++++-..-.. +|..-++..++..+++||+.... .+.++
T Consensus 22 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~---l~~~~fgeGi~~~~~~ly~ltw~------~~~v~ 88 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAE---VPPPYFGAGIVAWRDRLIQLTWR------NHEGF 88 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEe---CCCCcceeEEEEeCCEEEEEEee------CCEEE
Confidence 45677778899999988753 2459999999998655443 67677788888899999998543 36699
Q ss_pred EEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccc-eEEE
Q 009910 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 306 (522)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~-~~~~ 306 (522)
+||+++.+-..- .+.+..+.+.+. +++.+|+.-| .+.++.+|+++.+-..--..+..+.+... --+.
T Consensus 89 v~D~~tl~~~~t-----i~~~~~Gwglt~-dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 89 VYDLATLTPRAR-----FRYPGEGWALTS-DDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEETTTTEEEEE-----EECSSCCCEEEE-CSSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEE-----EeCCCCceEEee-CCCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 999988764432 222234455554 4454888654 35799999998754332222111222221 1233
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 307 ~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
..+++||+--- ..++|.+.|+.+.+-..
T Consensus 157 ~~~G~lyanvw-----~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 157 WVNGELLANVW-----LTSRIARIDPASGKVVA 184 (243)
T ss_dssp EETTEEEEEET-----TTTEEEEECTTTCBEEE
T ss_pred EeCCEEEEEEC-----CCCeEEEEECCCCCEEE
Confidence 45889885432 23579999999986443
No 21
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.92 E-value=0.02 Score=55.92 Aligned_cols=232 Identities=9% Similarity=-0.067 Sum_probs=132.3
Q ss_pred cccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEE-Eeeec
Q 009910 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAK 191 (522)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~ 191 (522)
.+.+-.||+.+.++...-..... + ..-....+.++..++++|+.... .+.+.++|+.+.+-. .++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n-~-----~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i~-- 81 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRAN-G-----FKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRIT-- 81 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHH-S-----SCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEEE--
T ss_pred CceEEEEECCCCEEhhhhHhhhc-C-----cccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEcC--
Confidence 46799999999887653211000 0 01122345667789999998653 235999999998763 343
Q ss_pred CCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCC
Q 009910 192 GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSS 269 (522)
Q Consensus 192 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~ 269 (522)
... ..+.++. .++++|+.... .+.+.++|+.+.+-...-..+.... ...-..++. .++.+|+..-
T Consensus 82 -~~~---~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~-- 148 (328)
T 3dsm_A 82 -GFT---SPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW-- 148 (328)
T ss_dssp -CCS---SEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC--
T ss_pred -CCC---CCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC--
Confidence 122 2233444 67899997532 3569999999987553221122000 001123334 4555888742
Q ss_pred CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCC-C----cCeEEEEECCCCceEEeccC
Q 009910 270 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKK-R----HAETLIFDILKGEWSVAITS 343 (522)
Q Consensus 270 ~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~-~----~~~v~~yd~~~~~W~~~~~~ 343 (522)
...+.+.++|+++++....-..+..| +.++. -++++|+..-..... . .+.++++|+.+.+.......
T Consensus 149 --~~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 149 --SYQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp --TTCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred --CCCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 01357999999988765543332222 22222 267888876432111 1 36799999998876643322
Q ss_pred CCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 344 p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
+. .. ....+++.. +...||+..+ .|+++|+.+.+.
T Consensus 222 ~~----g~-~p~~la~~~-d~~~lyv~~~-------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 222 KL----GD-WPSEVQLNG-TRDTLYWINN-------DIWRMPVEADRV 256 (328)
T ss_dssp CT----TC-CCEEEEECT-TSCEEEEESS-------SEEEEETTCSSC
T ss_pred CC----CC-CceeEEEec-CCCEEEEEcc-------EEEEEECCCCce
Confidence 21 11 123333432 3467888754 699999987764
No 22
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.77 E-value=0.012 Score=54.76 Aligned_cols=166 Identities=13% Similarity=0.135 Sum_probs=107.4
Q ss_pred ccceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCC
Q 009910 89 RFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168 (522)
Q Consensus 89 R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 168 (522)
-+-++....++.+|+-.|..+ .+.+.++|+.+.+=...... +...++.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l-----------~~~~fgeGi~~~~~~ly~ltw~--- 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEV-----------PPPYFGAGIVAWRDRLIQLTWR--- 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEEC-----------CTTCCEEEEEEETTEEEEEESS---
T ss_pred cccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeC-----------CCCcceeEEEEeCCEEEEEEee---
Confidence 445577788999999998654 36789999999866544431 2234677888899999998543
Q ss_pred CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 009910 169 GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (522)
Q Consensus 169 ~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 248 (522)
.+.+++||+.+.+-..- ++.+..+.+++..+++||+.=| .+.++.+|+++.+-..--..+..+.+
T Consensus 84 ---~~~v~v~D~~tl~~~~t-----i~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 84 ---NHEGFVYDLATLTPRAR-----FRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp ---SSEEEEEETTTTEEEEE-----EECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE
T ss_pred ---CCEEEEEECCcCcEEEE-----EeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcc
Confidence 24699999998764432 2223356777777788888633 35699999999764432211122223
Q ss_pred Ccce-EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeee
Q 009910 249 RSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 249 r~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 292 (522)
.... .+...+++ ||+--- ..++|.+.|+++++=...-.
T Consensus 149 ~~~lNeLe~~~G~-lyanvw-----~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 149 LDNLNELEWVNGE-LLANVW-----LTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp CCCEEEEEEETTE-EEEEET-----TTTEEEEECTTTCBEEEEEE
T ss_pred cccceeeEEeCCE-EEEEEC-----CCCeEEEEECCCCCEEEEEE
Confidence 2221 23344555 776431 24689999999887544433
No 23
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.77 E-value=0.039 Score=54.70 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=126.9
Q ss_pred EEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCC
Q 009910 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS 170 (522)
Q Consensus 93 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 170 (522)
+.++.++.||+... ...++.||..+. .|+.-........ .........+.+..++.||+....
T Consensus 48 ~p~v~~~~v~~~~~------~g~v~a~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~v~~~~----- 112 (376)
T 3q7m_A 48 HPALADNVVYAADR------AGLVKALNADDGKEIWSVSLAEKDGWF----SKEPALLSGGVTVSGGHVYIGSEK----- 112 (376)
T ss_dssp CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC---CC----SCCCCCEEEEEEEETTEEEEEETT-----
T ss_pred ccEEECCEEEEEcC------CCeEEEEEccCCceeeeecCccccccc----cccCcccccCceEeCCEEEEEcCC-----
Confidence 55667899999754 247899999765 6865543110000 000122334456668899885432
Q ss_pred CceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEeecCCCCC
Q 009910 171 DRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGP 246 (522)
Q Consensus 171 ~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p 246 (522)
..++.+|..+++ |+.-.. .. ...+.+..++.+|+..+ -..++.||+.+.+ |+.-... ...
T Consensus 113 --g~l~a~d~~tG~~~W~~~~~-----~~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~-~~~ 176 (376)
T 3q7m_A 113 --AQVYALNTSDGTVAWQTKVA-----GE-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDM-PSL 176 (376)
T ss_dssp --SEEEEEETTTCCEEEEEECS-----SC-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC----
T ss_pred --CEEEEEECCCCCEEEEEeCC-----Cc-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCC-Cce
Confidence 359999999876 765331 11 12233456788887432 2469999998765 8765311 111
Q ss_pred CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCCCCCc--------cceEEEEECCEEEEEc
Q 009910 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPR--------AGCCGVLCGTKWYIAG 316 (522)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r--------~~~~~~~~~~~iyi~G 316 (522)
..+...+.+..++. +|+ |..+ ..++.||++++ .|+.-... |... .....+..++.+|+.+
T Consensus 177 ~~~~~~~~~~~~~~-v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~v~~~~ 246 (376)
T 3q7m_A 177 SLRGESAPTTAFGA-AVV-GGDN-----GRVSAVLMEQGQMIWQQRISQ---ATGSTEIDRLSDVDTTPVVVNGVVFALA 246 (376)
T ss_dssp --CCCCCCEEETTE-EEE-CCTT-----TEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEEEC
T ss_pred eecCCCCcEEECCE-EEE-EcCC-----CEEEEEECCCCcEEEEEeccc---CCCCcccccccccCCCcEEECCEEEEEe
Confidence 11112233344443 555 4322 36999998765 47654322 1111 1223345588888764
Q ss_pred ccCCCCCcCeEEEEECCCC--ceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 317 GGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
. . ..++++|+.+. .|+.-. + ......+. .+.||+.... ..+..+|+.+.+
T Consensus 247 ~-~-----g~l~~~d~~tG~~~w~~~~--~--------~~~~~~~~---~~~l~~~~~~-----g~l~~~d~~tG~ 298 (376)
T 3q7m_A 247 Y-N-----GNLTALDLRSGQIMWKREL--G--------SVNDFIVD---GNRIYLVDQN-----DRVMALTIDGGV 298 (376)
T ss_dssp T-T-----SCEEEEETTTCCEEEEECC--C--------CEEEEEEE---TTEEEEEETT-----CCEEEEETTTCC
T ss_pred c-C-----cEEEEEECCCCcEEeeccC--C--------CCCCceEE---CCEEEEEcCC-----CeEEEEECCCCc
Confidence 2 2 34899999876 476521 1 11222232 3567765432 358999988775
No 24
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.73 E-value=0.0083 Score=56.51 Aligned_cols=195 Identities=12% Similarity=-0.001 Sum_probs=114.8
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEE
Q 009910 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (522)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 227 (522)
+-..+...++.||+..|..+ .+.+.++|+++++-..--+ ++..-++..++..+++||+.-.. .+.++
T Consensus 44 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~---l~~~~FgeGit~~g~~ly~ltw~------~~~v~ 110 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIE---LGKRYFGEGISDWKDKIVGLTWK------NGLGF 110 (262)
T ss_dssp EEEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEe---cCCccceeEEEEeCCEEEEEEee------CCEEE
Confidence 44566666899999988753 3469999999998654433 56555677788899999998542 36699
Q ss_pred EEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccce-EEE
Q 009910 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-CGV 306 (522)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~-~~~ 306 (522)
+||+++.+-..-- +.+-.+.+.+ .+++.+|+.-| .+.++.+|+++.+-..--..+....+.... -+.
T Consensus 111 v~D~~t~~~~~ti-----~~~~eG~glt-~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 111 VWNIRNLRQVRSF-----NYDGEGWGLT-HNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEETTTCCEEEEE-----ECSSCCCCEE-ECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEECccCcEEEEE-----ECCCCceEEe-cCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 9999887644321 1222344444 44554787543 357999999986543322211111111111 133
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCC-----C-CCCcEEEEEeeCCccEEEEEcCC
Q 009910 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT-----S-NKGFTLVLVQHKEKDFLVAFGGI 373 (522)
Q Consensus 307 ~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~-----~-r~~~~~~~~~~~~~~~l~v~GG~ 373 (522)
..+++||+--- ..++|.+.|+++.+-......+.-.+. + .....-.++. .+.+.|||.|-.
T Consensus 179 ~~~G~lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d-p~~~~lfVTGK~ 245 (262)
T 3nol_A 179 WVDGEIFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD-KEHHRLFVTGKL 245 (262)
T ss_dssp EETTEEEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE-TTTTEEEEEETT
T ss_pred EECCEEEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc-CCCCEEEEECCC
Confidence 45889886321 235799999999875544332211100 1 1111222332 345678888864
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.67 E-value=0.03 Score=56.88 Aligned_cols=199 Identities=13% Similarity=0.180 Sum_probs=108.1
Q ss_pred EEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcC
Q 009910 153 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 153 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
+..++..++.|+.+. .+..||+.+.+-...- ......-..+..++..++.|+.++ .+.+||+.
T Consensus 245 ~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~ 307 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVE 307 (445)
T ss_dssp EEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEETT
T ss_pred EEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCCC------eEEEEECC
Confidence 334666667776542 3788888776533221 111112223334777777777643 48899998
Q ss_pred CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEE
Q 009910 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312 (522)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i 312 (522)
+.+-...- . .......+...++. +++.|+.++ .+.+||+.+..-...-.. .........++..++.+
T Consensus 308 ~~~~~~~~---~--~~~~~v~~~~~~~~-~l~~~~~dg-----~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~ 374 (445)
T 2ovr_B 308 TGNCIHTL---T--GHQSLTSGMELKDN-ILVSGNADS-----TVKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNF 374 (445)
T ss_dssp TCCEEEEE---C--CCCSCEEEEEEETT-EEEEEETTS-----CEEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSE
T ss_pred CCCEEEEE---c--CCcccEEEEEEeCC-EEEEEeCCC-----eEEEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCE
Confidence 76643321 1 11112234445666 666676543 589999877653322111 01112223344457777
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
++.|+.++ .+.+||+.+.+.......... .........+.....+.+++.|+.++.....+.+||.+.+
T Consensus 375 l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 375 VITSSDDG-----TVKLWDLKTGEFIRNLVTLES---GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETTS-----EEEEEETTTCCEEEEEEECTT---GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEeCCC-----eEEEEECCCCceeeeeecccc---CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 88887654 499999988765432210100 1111222223233446688888888766667889887654
No 26
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.60 E-value=0.011 Score=58.60 Aligned_cols=228 Identities=14% Similarity=0.094 Sum_probs=121.5
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 176 (522)
..||+.|+.. +.+.++|+.+.+....-.. .. .-.+++.. ++.||+.|..+ ..+.
T Consensus 44 ~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~------------~~-~v~~~~~spdg~~l~~~~~~~------~~v~ 99 (391)
T 1l0q_A 44 TKVYVANAHS-----NDVSIIDTATNNVIATVPA------------GS-SPQGVAVSPDGKQVYVTNMAS------STLS 99 (391)
T ss_dssp SEEEEEEGGG-----TEEEEEETTTTEEEEEEEC------------SS-SEEEEEECTTSSEEEEEETTT------TEEE
T ss_pred CEEEEECCCC-----CeEEEEECCCCeEEEEEEC------------CC-CccceEECCCCCEEEEEECCC------CEEE
Confidence 4577776543 5789999988765443321 11 11222222 34566665432 3599
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
+||+.+++...... . .....+++.. + ..+|+.++.+ +.+.+||+.+.+....-..+. .-..+
T Consensus 100 v~d~~~~~~~~~~~---~--~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~-----~~~~~ 163 (391)
T 1l0q_A 100 VIDTTSNTVAGTVK---T--GKSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGR-----SPKGI 163 (391)
T ss_dssp EEETTTTEEEEEEE---C--SSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCS-----SEEEE
T ss_pred EEECCCCeEEEEEe---C--CCCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCC-----CcceE
Confidence 99999987654432 1 1122333332 2 3677776432 469999998887655432111 11233
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CC-EEEEEcccCCCCCcCeEEEEE
Q 009910 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 255 ~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~iyi~GG~~~~~~~~~v~~yd 331 (522)
+.. +++.+|+.++.+ +.+.+||+.++........ .....+++.. ++ .+|+.+... ....+++||
T Consensus 164 ~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~---~~~~v~~~d 230 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDK---YFNTVSMID 230 (391)
T ss_dssp EECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECS---SCCEEEEEE
T ss_pred EECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEec-----CCCccceEECCCCCEEEEEecCc---CCCcEEEEE
Confidence 333 344566766543 4699999988765544332 1111222222 34 455544311 125699999
Q ss_pred CCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 332 ~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
+.+.+-.... +.. .....+.+.. +...||+.++.+ +.|.+||+.+.+-
T Consensus 231 ~~~~~~~~~~--~~~-----~~~~~~~~s~-dg~~l~~s~~~d----~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 231 TGTNKITARI--PVG-----PDPAGIAVTP-DGKKVYVALSFX----NTVSVIDTATNTI 278 (391)
T ss_dssp TTTTEEEEEE--ECC-----SSEEEEEECT-TSSEEEEEETTT----TEEEEEETTTTEE
T ss_pred CCCCeEEEEE--ecC-----CCccEEEEcc-CCCEEEEEcCCC----CEEEEEECCCCcE
Confidence 9877543322 111 1123334432 334676766543 4689999887653
No 27
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.51 E-value=0.0089 Score=59.36 Aligned_cols=227 Identities=18% Similarity=0.089 Sum_probs=122.1
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 176 (522)
+.+|+.|+.+ +.+.++|+.+.+-...-.. . . .-.+++.. +..||+.|+.+ ..+.
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~----------~--~-~~~~~~~s~dg~~l~~~~~~d------~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPV----------G--S-NPMGAVISPDGTKVYVANAHS------NDVS 57 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEEC----------S--S-SEEEEEECTTSSEEEEEEGGG------TEEE
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeec----------C--C-CcceEEECCCCCEEEEECCCC------CeEE
Confidence 3577777644 5689999988754433221 1 1 11222222 34677777543 2599
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
++|+.+++....-. .+. .-.+++.. +..||+.|..+ ..+.+||+.+.+-...... .....++
T Consensus 58 v~d~~~~~~~~~~~---~~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~-----~~~~~~~ 121 (391)
T 1l0q_A 58 IIDTATNNVIATVP---AGS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKT-----GKSPLGL 121 (391)
T ss_dssp EEETTTTEEEEEEE---CSS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEEC-----SSSEEEE
T ss_pred EEECCCCeEEEEEE---CCC--CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeC-----CCCcceE
Confidence 99999887654432 122 22233332 34566654322 4599999998876544311 1112333
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEE
Q 009910 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 255 ~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd 331 (522)
+.. +++.+|+.++.+ +.+++||+.+.+.......+. .-..++.. +..+|+.++.+ ..++++|
T Consensus 122 ~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d 186 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDS-----MSISVID 186 (391)
T ss_dssp EECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred EECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCC-----CEEEEEE
Confidence 333 345576776543 369999998887655443321 11233333 34677776544 3599999
Q ss_pred CCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 332 ~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.+.+........ .....+.+.. +...|++.+.. .....|.+||+.+.+
T Consensus 187 ~~~~~~~~~~~~~-------~~~~~~~~~~-~g~~l~~~~~~--~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 187 TVTNSVIDTVKVE-------AAPSGIAVNP-EGTKAYVTNVD--KYFNTVSMIDTGTNK 235 (391)
T ss_dssp TTTTEEEEEEECS-------SEEEEEEECT-TSSEEEEEEEC--SSCCEEEEEETTTTE
T ss_pred CCCCeEEEEEecC-------CCccceEECC-CCCEEEEEecC--cCCCcEEEEECCCCe
Confidence 9887655433211 1122333332 33455554421 123468888887654
No 28
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.51 E-value=0.02 Score=53.80 Aligned_cols=190 Identities=12% Similarity=0.010 Sum_probs=114.1
Q ss_pred ceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCC
Q 009910 91 NHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS 170 (522)
Q Consensus 91 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 170 (522)
-.+....++.+|+-.|..+ .+.+.++|+.+.+=...-+. .+..++.+++..+++||+....
T Consensus 45 tqGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l-----------~~~~FgeGit~~g~~ly~ltw~----- 105 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIEL-----------GKRYFGEGISDWKDKIVGLTWK----- 105 (262)
T ss_dssp EEEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEEC-----------CTTCCEEEEEEETTEEEEEESS-----
T ss_pred cceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEec-----------CCccceeEEEEeCCEEEEEEee-----
Confidence 3556666899999988654 35789999999865444331 2233567788889999998543
Q ss_pred CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 171 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
.+.+++||+++.+-..- ++.+-.+.+++..++.||+.=| .+.++.+|+++.+-..--..+..+.+..
T Consensus 106 -~~~v~v~D~~t~~~~~t-----i~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~ 172 (262)
T 3nol_A 106 -NGLGFVWNIRNLRQVRS-----FNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELP 172 (262)
T ss_dssp -SSEEEEEETTTCCEEEE-----EECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred -CCEEEEEECccCcEEEE-----EECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence 24699999998774432 2222355666666778888532 3569999999876443211111111211
Q ss_pred ce-EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCC-C-------CCccceEEEEE--CCEEEEEccc
Q 009910 251 NH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH-P-------SPRAGCCGVLC--GTKWYIAGGG 318 (522)
Q Consensus 251 ~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-p-------~~r~~~~~~~~--~~~iyi~GG~ 318 (522)
.. .+...+++ ||+--- ..+.|.+.|+++++=...-....+ | ..-.-.+.|.. ++++||.|-.
T Consensus 173 ~lNELe~~~G~-lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 173 ELNELEWVDGE-IFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CEEEEEEETTE-EEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccceeEEECCE-EEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 11 23344665 886321 246899999999875554443211 1 11111233443 5788888753
No 29
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.50 E-value=0.024 Score=57.07 Aligned_cols=241 Identities=12% Similarity=0.032 Sum_probs=123.1
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+++.++.. ..+.++|+.+.+......... ...+. .....+.+ ++.+|+.|+.+ ..+
T Consensus 133 ~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~-------~~~~~-~~v~~~~~~~~~~~~~s~~~d------~~v 193 (433)
T 3bws_A 133 NTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEK-------YKKKL-GFVETISIPEHNELWVSQMQA------NAV 193 (433)
T ss_dssp SSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHH-------HHTTC-CEEEEEEEGGGTEEEEEEGGG------TEE
T ss_pred CCeEEEEeCCC-----CeEEEEECCCCeEeeecCccc-------ccccC-CceeEEEEcCCCEEEEEECCC------CEE
Confidence 67788877643 469999999877654322100 00001 11122223 67888887753 258
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceE
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (522)
.+||+.+.+....-. .....-.+++.. +..+|+.++.+ ..+.+||+.+.+....- +....-.+
T Consensus 194 ~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~-----~~~~~~~~ 258 (433)
T 3bws_A 194 HVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKT-----DKIGLPRG 258 (433)
T ss_dssp EEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEC-----CCCSEEEE
T ss_pred EEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEe-----cCCCCceE
Confidence 999998876443221 111122233333 34676765433 35899999887654432 11112233
Q ss_pred EEEE-CCcEEEEEcCCCCCC---CCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeE
Q 009910 254 AALY-DDKNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAET 327 (522)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v 327 (522)
++.. +++ .+++++..... .-..+++||+.+..-...... +. ...+++.. ++.+|+.++.++ .+
T Consensus 259 ~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~g~~l~~~~~~~~-----~v 327 (433)
T 3bws_A 259 LLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGNTENKIYVSDMCCS-----KI 327 (433)
T ss_dssp EEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECSSTTEEEEEETTTT-----EE
T ss_pred EEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECCCCCEEEEEecCCC-----EE
Confidence 3333 344 44444432211 124799999987754443221 11 11122222 346888766543 59
Q ss_pred EEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC----------CCCcEEEEEcccCCc
Q 009910 328 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE----------PSNQVEVLSIEKNES 391 (522)
Q Consensus 328 ~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~----------~~~~v~~y~~~~~~w 391 (522)
.+||+.+.+-...... ......+.+..++ ..|++.+..... ....|.+||+.+.+.
T Consensus 328 ~v~d~~~~~~~~~~~~-------~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 328 EVYDLKEKKVQKSIPV-------FDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEETTTTEEEEEEEC-------SSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEECCCCcEEEEecC-------CCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 9999987654432211 1122334444333 345544432211 134799999877653
No 30
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.45 E-value=0.11 Score=51.39 Aligned_cols=227 Identities=14% Similarity=0.172 Sum_probs=123.5
Q ss_pred cceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCC
Q 009910 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD 167 (522)
Q Consensus 90 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 167 (522)
...+.++.++.||+... ...++.||..+. .|+..... ....+.+..++.||+....
T Consensus 95 ~~~~~~~~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~--------------~~~~~p~~~~~~v~v~~~~-- 152 (376)
T 3q7m_A 95 LSGGVTVSGGHVYIGSE------KAQVYALNTSDGTVAWQTKVAG--------------EALSRPVVSDGLVLIHTSN-- 152 (376)
T ss_dssp EEEEEEEETTEEEEEET------TSEEEEEETTTCCEEEEEECSS--------------CCCSCCEEETTEEEEECTT--
T ss_pred cccCceEeCCEEEEEcC------CCEEEEEECCCCCEEEEEeCCC--------------ceEcCCEEECCEEEEEcCC--
Confidence 33455667888888643 247899999865 57654321 0112234557888875431
Q ss_pred CCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEeecCC
Q 009910 168 SGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTG 243 (522)
Q Consensus 168 ~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g 243 (522)
..++.||+.+++ |+.-.... ....+...+.+..++.+|+ |.. -..+..||+.+.+ |+.-.
T Consensus 153 -----g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~--- 216 (376)
T 3q7m_A 153 -----GQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTAFGAAVV-GGD------NGRVSAVLMEQGQMIWQQRI--- 216 (376)
T ss_dssp -----SEEEEEETTTCCEEEEEECCC------CCCCCCEEETTEEEE-CCT------TTEEEEEETTTCCEEEEEEC---
T ss_pred -----CeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEECCEEEE-EcC------CCEEEEEECCCCcEEEEEec---
Confidence 259999998876 87644211 1111222344455777776 322 2358999997654 77643
Q ss_pred CCCCCC--------cceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCCCCCccceEEEEECCEEE
Q 009910 244 TGPSPR--------SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLCGTKWY 313 (522)
Q Consensus 244 ~~p~~r--------~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~iy 313 (522)
..|... .....+..++. +|+.+ . ...++.+|++++ .|+.-. +. ..+.+..++.||
T Consensus 217 ~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~-~-----~g~l~~~d~~tG~~~w~~~~-----~~---~~~~~~~~~~l~ 281 (376)
T 3q7m_A 217 SQATGSTEIDRLSDVDTTPVVVNGV-VFALA-Y-----NGNLTALDLRSGQIMWKREL-----GS---VNDFIVDGNRIY 281 (376)
T ss_dssp CC-----------CCCCCCEEETTE-EEEEC-T-----TSCEEEEETTTCCEEEEECC-----CC---EEEEEEETTEEE
T ss_pred ccCCCCcccccccccCCCcEEECCE-EEEEe-c-----CcEEEEEECCCCcEEeeccC-----CC---CCCceEECCEEE
Confidence 111111 11222334444 66653 2 236999999766 465431 11 223455688898
Q ss_pred EEcccCCCCCcCeEEEEECCCCc--eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 314 IAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.... ..+++||+.+.+ |+.-.. + .....+.+..+ +.||+... ...++++|+++.+
T Consensus 282 ~~~~~------g~l~~~d~~tG~~~w~~~~~-~-----~~~~~~~~~~~----~~l~v~~~-----~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 282 LVDQN------DRVMALTIDGGVTLWTQSDL-L-----HRLLTSPVLYN----GNLVVGDS-----EGYLHWINVEDGR 339 (376)
T ss_dssp EEETT------CCEEEEETTTCCEEEEECTT-T-----TSCCCCCEEET----TEEEEECT-----TSEEEEEETTTCC
T ss_pred EEcCC------CeEEEEECCCCcEEEeeccc-C-----CCcccCCEEEC----CEEEEEeC-----CCeEEEEECCCCc
Confidence 87532 349999998765 765211 1 11112223332 45665432 1258889988775
No 31
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.38 E-value=0.052 Score=54.55 Aligned_cols=235 Identities=10% Similarity=0.049 Sum_probs=116.8
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+|+.|+.. ..+.+||+.+.+....-.. ....-.+++.. ++.+|+.++.+ ..+
T Consensus 180 ~~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~------~~i 236 (433)
T 3bws_A 180 HNELWVSQMQA-----NAVHVFDLKTLAYKATVDL------------TGKWSKILLYDPIRDLVYCSNWIS------EDI 236 (433)
T ss_dssp GTEEEEEEGGG-----TEEEEEETTTCCEEEEEEC------------SSSSEEEEEEETTTTEEEEEETTT------TEE
T ss_pred CCEEEEEECCC-----CEEEEEECCCceEEEEEcC------------CCCCeeEEEEcCCCCEEEEEecCC------CcE
Confidence 57788887643 5789999987654322210 01111223322 45677776543 259
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCC--ccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRR--KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~--~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
.+||+.+.+....- +....-.+++.. +++.+++++...... .-..+.+||+.+.+-.... ..+. ...
T Consensus 237 ~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~--~~~ 306 (433)
T 3bws_A 237 SVIDRKTKLEIRKT-----DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPG--NKR 306 (433)
T ss_dssp EEEETTTTEEEEEC-----CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEE--CEE
T ss_pred EEEECCCCcEEEEe-----cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec---cCCC--Ccc
Confidence 99999988754332 222222333332 454445555433211 1246899999887644332 1111 111
Q ss_pred EEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE-EEEEcccCCC--------
Q 009910 253 VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRK-------- 321 (522)
Q Consensus 253 ~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyi~GG~~~~-------- 321 (522)
.++.. +++.+|+.++.+ +.+.+||+.+.+-...-.. ...-.+++.. +++ +|+.+.....
T Consensus 307 ~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKSIPV-----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp EEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred eEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEEecC-----CCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 22333 344577776543 3699999987654433221 1111233332 444 5544432110
Q ss_pred -CCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 322 -KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 322 -~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
..-..++++|+.+.+....... ......+.+.. +...|++.+..+ +.+.+|+++
T Consensus 377 g~~dg~v~~~d~~~~~~~~~~~~-------~~~~~~~~~s~-dg~~l~~~~~~d----~~i~v~~~~ 431 (433)
T 3bws_A 377 GLVLGKVYVIDTTTDTVKEFWEA-------GNQPTGLDVSP-DNRYLVISDFLD----HQIRVYRRD 431 (433)
T ss_dssp CSSCCEEEEEETTTTEEEEEEEC-------SSSEEEEEECT-TSCEEEEEETTT----TEEEEEEET
T ss_pred cccceEEEEEECCCCcEEEEecC-------CCCCceEEEcC-CCCEEEEEECCC----CeEEEEEec
Confidence 0124799999988765543321 11223344433 334455444322 358888765
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.32 E-value=0.09 Score=51.26 Aligned_cols=199 Identities=14% Similarity=0.085 Sum_probs=94.1
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.+++.|+.+ ..+.+||+.+.++....... .....-.++... ++..++.|+.+. .+.
T Consensus 63 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~d~------~v~ 121 (372)
T 1k8k_C 63 DSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVIL----------RINRAARCVRWAPNEKKFAVGSGSR------VIS 121 (372)
T ss_dssp TTTEEEEEETT-----SCEEEEEEETTEEEEEEECC----------CCSSCEEEEEECTTSSEEEEEETTS------SEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCeeeeeEEee----------cCCCceeEEEECCCCCEEEEEeCCC------EEE
Confidence 45566666643 46889999888776554311 111111222222 456666766532 255
Q ss_pred EEECCCCc-EEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC----------------cEEE
Q 009910 177 TFDTETEC-WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL----------------TWLP 238 (522)
Q Consensus 177 ~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~----------------~W~~ 238 (522)
.||..+.. |...... ..+....-.+++.. ++.+++.|+.++ .+.+||+... .-..
T Consensus 122 i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp EEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred EEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCCC------CEEEEEcccccccccccccccccccchhhh
Confidence 55555443 3322211 01111112222222 466777776543 4788885421 1111
Q ss_pred eecCCCCC-CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEc
Q 009910 239 LHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAG 316 (522)
Q Consensus 239 ~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~G 316 (522)
+. .+. ....-.+++...+..+++.|+.+ ..+.+||..+..-...-.. ... .-.+++. -++++++.|
T Consensus 195 ~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 195 MF---ESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAVATLAS---ETL-PLLAVTFITESSLVAAG 262 (372)
T ss_dssp EE---ECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEEEEEEC---SSC-CEEEEEEEETTEEEEEE
T ss_pred eE---ecCCCCCeEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCceeEEEcc---CCC-CeEEEEEecCCCEEEEE
Confidence 11 111 11112223333333256666543 3589999876653332221 111 1122222 266766555
Q ss_pred ccCCCCCcCeEEEEECCC--CceEEecc
Q 009910 317 GGSRKKRHAETLIFDILK--GEWSVAIT 342 (522)
Q Consensus 317 G~~~~~~~~~v~~yd~~~--~~W~~~~~ 342 (522)
.++ .+.+||+.+ ++|..+..
T Consensus 263 -~d~-----~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 263 -HDC-----FPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp -TTS-----SCEEEEEETTTTEEEECCC
T ss_pred -eCC-----eEEEEEccCcCceEEEeec
Confidence 433 367777777 88877643
No 33
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.30 E-value=0.097 Score=49.51 Aligned_cols=201 Identities=8% Similarity=-0.034 Sum_probs=117.2
Q ss_pred ceEEEEEC-CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 91 NHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (522)
Q Consensus 91 ~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (522)
-+++++.+ +.+|+..|..+ .+.+.++|+.+.+=...-+. .+..++..++..+++||+..-.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l-----------~~~~fgeGi~~~g~~lyv~t~~---- 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKM-----------DDSYFGEGLTLLNEKLYQVVWL---- 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEEC-----------CTTCCEEEEEEETTEEEEEETT----
T ss_pred cccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEec-----------CCCcceEEEEEeCCEEEEEEec----
Confidence 36666666 78999877432 36799999999875443321 1233556777889999998532
Q ss_pred CCceeEEEEECCCCcEE-EeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 009910 170 SDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 248 (522)
.+.+++||+.+.+=. .++. + +| .+..++..++++|+.-| .+.++.+|+++.+-...-..+..+.+
T Consensus 85 --~~~v~viD~~t~~v~~~i~~-g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 85 --KNIGFIYDRRTLSNIKNFTH-Q-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp --CSEEEEEETTTTEEEEEEEC-C-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE
T ss_pred --CCEEEEEECCCCcEEEEEEC-C-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcc
Confidence 346999999987633 2331 1 22 34455555678988632 36799999998764433211222222
Q ss_pred Ccc-eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCC---------CCCCccceEEEEE--CCEEEEEc
Q 009910 249 RSN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF---------HPSPRAGCCGVLC--GTKWYIAG 316 (522)
Q Consensus 249 r~~-~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~---------~p~~r~~~~~~~~--~~~iyi~G 316 (522)
... ..+...++ .+|+--. ..++|.+.|+++++=...-..+. .+..-.-.+.+.. ++++||.|
T Consensus 151 ~~~~nele~~dg-~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 151 VIRLNELEYING-EVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp CCCEEEEEEETT-EEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred cccceeEEEECC-EEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 211 12333455 4886532 24689999998876433322210 0100111334444 56899998
Q ss_pred ccCCCCCcCeEEEEECCC
Q 009910 317 GGSRKKRHAETLIFDILK 334 (522)
Q Consensus 317 G~~~~~~~~~v~~yd~~~ 334 (522)
+... .+++.++..
T Consensus 225 k~~~-----~v~~i~l~~ 237 (266)
T 2iwa_A 225 KLWP-----KLFEIKLHL 237 (266)
T ss_dssp TTCS-----EEEEEEEEE
T ss_pred CCCC-----eEEEEEEec
Confidence 8653 477777644
No 34
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.28 E-value=0.023 Score=53.51 Aligned_cols=161 Identities=10% Similarity=0.037 Sum_probs=100.7
Q ss_pred cceEEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (522)
Q Consensus 90 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (522)
+..+....++.||+..|..+ .+.++|+.+.+=...- . .+..++.+++..+++||+....
T Consensus 56 ftqGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l-----------~~~~FgeGit~~g~~Ly~ltw~---- 114 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-R-----------LGNIFAEGLASDGERLYQLTWT---- 114 (268)
T ss_dssp CEEEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-E-----------CTTCCEEEEEECSSCEEEEESS----
T ss_pred ccceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-C-----------CCCcceeEEEEeCCEEEEEEcc----
Confidence 33566777899999998654 2889999887432211 1 1233566788889999998543
Q ss_pred CCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 009910 170 SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 249 (522)
.+.+++||+++.+-..-- +.+-.+.+++..+++||+.-| .+.++.+|+++.+-..--..+..+.+.
T Consensus 115 --~~~v~V~D~~Tl~~~~ti-----~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 115 --EGLLFTWSGMPPQRERTT-----RYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp --SCEEEEEETTTTEEEEEE-----ECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred --CCEEEEEECCcCcEEEEE-----eCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 246999999987744322 222345677777889999743 357999999997644322111222222
Q ss_pred cc-eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEee
Q 009910 250 SN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 291 (522)
Q Consensus 250 ~~-~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 291 (522)
.. -.+...+++ ||+-- -..++|.+.|+++++=...-
T Consensus 181 ~~lNeLe~~dG~-lyanv-----w~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 181 ELINELECANGV-IYANI-----WHSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp CCEEEEEEETTE-EEEEE-----TTCSEEEEECTTTCBEEEEE
T ss_pred ccccccEEeCCE-EEEEE-----CCCCeEEEEeCCCCcEEEEE
Confidence 11 123334565 78632 12468999999988654433
No 35
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.27 E-value=0.13 Score=48.57 Aligned_cols=206 Identities=12% Similarity=-0.023 Sum_probs=117.5
Q ss_pred eEEEEEC-CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEE
Q 009910 150 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (522)
Q Consensus 150 ~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 228 (522)
+.++..+ +.+|+..|... .+.+.++|+.+++-...-+ ++...++..++..+++||+..- ..+.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~---l~~~~fgeGi~~~g~~lyv~t~------~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHK---MDDSYFGEGLTLLNEKLYQVVW------LKNIGFI 90 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEET------TCSEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEe---cCCCcceEEEEEeCCEEEEEEe------cCCEEEE
Confidence 5666655 89999877432 3459999999998554332 4444456677778899999843 2466999
Q ss_pred EEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCcc-ceEEEE
Q 009910 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA-GCCGVL 307 (522)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~-~~~~~~ 307 (522)
||+.+.+=..--+.+ .|. +... ..+++.+|+.-| .+.++.+|+++.+-..--..+..+.+.. -..+..
T Consensus 91 iD~~t~~v~~~i~~g-~~~---g~gl-t~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ-MKD---GWGL-ATDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp EETTTTEEEEEEECC-SSS---CCEE-EECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EECCCCcEEEEEECC-CCC---eEEE-EECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 999876533221111 122 2333 345555888644 3689999998865333222221112211 112334
Q ss_pred ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCC------C-CCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCc
Q 009910 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------S-VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQ 380 (522)
Q Consensus 308 ~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~------~-~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~ 380 (522)
.++++|+--.. .++|.+.|+++.+-......+.. . .........+++. .+.+++||.|+.. +.
T Consensus 160 ~dg~lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-~~~~~lfVTgk~~----~~ 229 (266)
T 2iwa_A 160 INGEVWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD-QENKRIFVTGKLW----PK 229 (266)
T ss_dssp ETTEEEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE-TTTTEEEEEETTC----SE
T ss_pred ECCEEEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc-CCCCEEEEECCCC----Ce
Confidence 48888865432 35799999998764332221100 0 0000112223332 3456899998863 46
Q ss_pred EEEEEcccC
Q 009910 381 VEVLSIEKN 389 (522)
Q Consensus 381 v~~y~~~~~ 389 (522)
|.+.++...
T Consensus 230 v~~i~l~~~ 238 (266)
T 2iwa_A 230 LFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecc
Confidence 777776654
No 36
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.054 Score=52.91 Aligned_cols=239 Identities=10% Similarity=0.084 Sum_probs=120.7
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-C--CEEEEEcccCCCCCCceeE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v 175 (522)
+..++.|+.+ ..+.+||....++..+.... .....-.+++.. + +.+++.|+.+. .+
T Consensus 23 ~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v 81 (379)
T 3jrp_A 23 GKRLATCSSD-----KTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDG------KV 81 (379)
T ss_dssp SSEEEEEETT-----SCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTS------CE
T ss_pred CCEEEEEECC-----CcEEEEecCCCcceeeeEec----------CCCCcEEEEEeCCCCCCCEEEEeccCC------EE
Confidence 5566666543 46888888877776655421 111111222222 2 56777777542 38
Q ss_pred EEEECCCCcEEEeeecCCCCCCCc-ceEEEEE-C--CEEEEEcccCCCCCccCcEEEEEcCCCcE-EEeecCCCCCCCCc
Q 009910 176 WTFDTETECWSVVEAKGDIPVARS-GHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHCTGTGPSPRS 250 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~-~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~ 250 (522)
..||..+++|..+.. ...... -.+++.. + +.+++.|+.+. .+.+||+.+..- ...... .. ...
T Consensus 82 ~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~~-~~--~~~ 149 (379)
T 3jrp_A 82 LIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIID-AH--AIG 149 (379)
T ss_dssp EEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCTTSCCCEEEEE-CC--TTC
T ss_pred EEEEcCCCceeEeee---ecCCCcceEEEEeCCCCCCCEEEEecCCC------cEEEEecCCCCceeeEEec-CC--CCc
Confidence 889999998876654 221111 2222222 2 56777776543 478888876531 111100 11 111
Q ss_pred ceEEEEEC--------------CcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCCCCCccce-EEEEE-C---
Q 009910 251 NHVAALYD--------------DKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGC-CGVLC-G--- 309 (522)
Q Consensus 251 ~~~~~~~~--------------~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r~~~-~~~~~-~--- 309 (522)
-.+++... +. +++.|+.++ .+.+||+.+. .|..+... ....... +++.. +
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~---~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEEEECCCC----------CTTC-EEEEEETTS-----CEEEEEEETTTTEEEEEEEE---CCCSSCEEEEEECCCCSS
T ss_pred eEEEEEcCccccccccccCCCCCC-EEEEEeCCC-----eEEEEEecCCCcceeeEEEE---ecccCcEeEEEECCCCCC
Confidence 12222222 44 677776544 4888887544 35554443 1111112 22222 4
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCCc--eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 310 TKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 310 ~~iyi~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
+.+++.|+.++. +.+||+.+.. +........ ........+.+..++ .+++.|+.++ .|.+|++.
T Consensus 221 ~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g--~~l~~~~~dg----~i~iw~~~ 286 (379)
T 3jrp_A 221 RSYLASVSQDRT-----CIIWTQDNEQGPWKKTLLKEE---KFPDVLWRASWSLSG--NVLALSGGDN----KVTLWKEN 286 (379)
T ss_dssp SEEEEEEETTSC-----EEEEEESSTTSCCEEEESSSS---CCSSCEEEEEECSSS--CCEEEEESSS----SEEEEEEE
T ss_pred CCeEEEEeCCCE-----EEEEeCCCCCccceeeeeccc---cCCCcEEEEEEcCCC--CEEEEecCCC----cEEEEeCC
Confidence 688888887654 8888887653 222111010 111223333443333 3566666543 58888887
Q ss_pred c-CCccc
Q 009910 388 K-NESSM 393 (522)
Q Consensus 388 ~-~~w~~ 393 (522)
. .+|..
T Consensus 287 ~~~~~~~ 293 (379)
T 3jrp_A 287 LEGKWEP 293 (379)
T ss_dssp ETTEEEE
T ss_pred CCCcccc
Confidence 4 34544
No 37
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.24 E-value=0.043 Score=55.54 Aligned_cols=229 Identities=12% Similarity=0.150 Sum_probs=122.0
Q ss_pred EEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCcee
Q 009910 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 95 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (522)
...++..++.|+.+ ..+.+||..+.+-...-. ... ..-.++..++.+++.|+.+. .
T Consensus 139 ~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~------------~h~-~~v~~l~~~~~~l~sg~~dg------~ 194 (435)
T 1p22_A 139 LQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILT------------GHT-GSVLCLQYDERVIITGSSDS------T 194 (435)
T ss_dssp EECCSSEEEEEESS-----SCEEEEESSSCCEEEEEC------------CCS-SCEEEEECCSSEEEEEETTS------C
T ss_pred EEECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEc------------CCC-CcEEEEEECCCEEEEEcCCC------e
Confidence 33466777777654 578899988765432221 001 11233444777778887643 3
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
+..||..+++-...- ......-..+...+..++.|+.++ .+.+||+.+..-..... ..........+
T Consensus 195 i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~v~~ 261 (435)
T 1p22_A 195 VRVWDVNTGEMLNTL-----IHHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHRAAVNV 261 (435)
T ss_dssp EEEEESSSCCEEEEE-----CCCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCSSCEEE
T ss_pred EEEEECCCCcEEEEE-----cCCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCCCcEEE
Confidence 888999887643322 111112223334555677776543 48889987654221100 01111122234
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
+..++. .++.|+.+ ..+.+||+.+..-...-.. ......++..++.+++.|+.++. +.+||+.+
T Consensus 262 ~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~g~~dg~-----i~iwd~~~ 325 (435)
T 1p22_A 262 VDFDDK-YIVSASGD-----RTIKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSDNT-----IRLWDIEC 325 (435)
T ss_dssp EEEETT-EEEEEETT-----SEEEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEEEEETTSC-----EEEEETTT
T ss_pred EEeCCC-EEEEEeCC-----CeEEEEECCcCcEEEEEcC-----CCCcEEEEEeCCCEEEEEeCCCe-----EEEEECCC
Confidence 445677 56666554 3589999887653322211 11122333446677778876654 99999987
Q ss_pred CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 335 ~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+-...- ... ......+.+ + +..++.|+.++ .|.+||+.+.+
T Consensus 326 ~~~~~~~--~~h----~~~v~~~~~--~--~~~l~sg~~dg----~i~vwd~~~~~ 367 (435)
T 1p22_A 326 GACLRVL--EGH----EELVRCIRF--D--NKRIVSGAYDG----KIKVWDLVAAL 367 (435)
T ss_dssp CCEEEEE--CCC----SSCEEEEEC--C--SSEEEEEETTS----CEEEEEHHHHT
T ss_pred CCEEEEE--eCC----cCcEEEEEe--c--CCEEEEEeCCC----cEEEEECCCCC
Confidence 6533222 111 111222222 2 33567777653 58999987654
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.21 E-value=0.11 Score=49.52 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=98.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCc-ceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS-GHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
+++.++.|+.+ ..+..||..+.+...... +..... -.+++.. ++..++.|+.++ .+.+||+.+
T Consensus 108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~ 172 (337)
T 1gxr_A 108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDLHN 172 (337)
T ss_dssp TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEcCC------CcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCC
Confidence 45666666643 258899999887544332 111111 1222222 456777776543 488999988
Q ss_pred CcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE
Q 009910 234 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 311 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~ 311 (522)
.+....- .... ..-.+++.. ++. .++.|+.+ ..+..||+.+..-...... +. .-.+++.. +++
T Consensus 173 ~~~~~~~---~~~~-~~i~~~~~~~~~~-~l~~~~~d-----g~i~~~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~ 237 (337)
T 1gxr_A 173 QTLVRQF---QGHT-DGASCIDISNDGT-KLWTGGLD-----NTVRSWDLREGRQLQQHDF---TS--QIFSLGYCPTGE 237 (337)
T ss_dssp TEEEEEE---CCCS-SCEEEEEECTTSS-EEEEEETT-----SEEEEEETTTTEEEEEEEC---SS--CEEEEEECTTSS
T ss_pred Cceeeee---eccc-CceEEEEECCCCC-EEEEEecC-----CcEEEEECCCCceEeeecC---CC--ceEEEEECCCCC
Confidence 7654432 1111 112233333 344 56666543 3599999987654333221 11 11222332 566
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
++++|+.++ .+.+||+.+.+-..+.. .......+.+..++ .+++.|+.++ .+.+|++++.+
T Consensus 238 ~l~~~~~~~-----~i~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~--~~l~~~~~dg----~i~~~~~~~~~ 298 (337)
T 1gxr_A 238 WLAVGMESS-----NVEVLHVNKPDKYQLHL-------HESCVLSLKFAYCG--KWFVSTGKDN----LLNAWRTPYGA 298 (337)
T ss_dssp EEEEEETTS-----CEEEEETTSSCEEEECC-------CSSCEEEEEECTTS--SEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEEcCCC-----cEEEEECCCCCeEEEcC-------CccceeEEEECCCC--CEEEEecCCC----cEEEEECCCCe
Confidence 777777554 38999998766433321 11123334443223 3566666543 58888887765
No 39
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.21 E-value=0.12 Score=52.22 Aligned_cols=227 Identities=14% Similarity=0.142 Sum_probs=118.4
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
.+.+++.|+.+ ..+.++|+.+.+-...-. ... ..-.++..++..++.|+.+ ..+..
T Consensus 168 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~------------~h~-~~v~~~~~~~~~l~s~s~d------g~i~~ 223 (445)
T 2ovr_B 168 RDNIIISGSTD-----RTLKVWNAETGECIHTLY------------GHT-STVRCMHLHEKRVVSGSRD------ATLRV 223 (445)
T ss_dssp ETTEEEEEETT-----SCEEEEETTTTEEEEEEC------------CCS-SCEEEEEEETTEEEEEETT------SEEEE
T ss_pred cCCEEEEEeCC-----CeEEEEECCcCcEEEEEC------------CCC-CcEEEEEecCCEEEEEeCC------CEEEE
Confidence 35566666644 468899998764332211 011 1122233344556666654 24888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (522)
||+.+.+-...-. .......++..++..++.|+.++ .+.+||+.+.+-...- ........+..+
T Consensus 224 wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~ 287 (445)
T 2ovr_B 224 WDIETGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQF 287 (445)
T ss_dssp EESSSCCEEEEEE-----CCSSCEEEEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEE
T ss_pred EECCCCcEEEEEc-----CCcccEEEEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEE
Confidence 9988876433221 11112223334777777777643 4888998776533221 111112234445
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCce
Q 009910 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (522)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W 337 (522)
++. .++.|+.++ .+..||+.+..-...-. .......+...++..++.|+.++. +.+||+.+.+-
T Consensus 288 ~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~ 351 (445)
T 2ovr_B 288 DGI-HVVSGSLDT-----SIRVWDVETGNCIHTLT-----GHQSLTSGMELKDNILVSGNADST-----VKIWDIKTGQC 351 (445)
T ss_dssp CSS-EEEEEETTS-----CEEEEETTTCCEEEEEC-----CCCSCEEEEEEETTEEEEEETTSC-----EEEEETTTCCE
T ss_pred CCC-EEEEEeCCC-----eEEEEECCCCCEEEEEc-----CCcccEEEEEEeCCEEEEEeCCCe-----EEEEECCCCcE
Confidence 676 566666543 58999987765332211 111122233345566777776544 89999977654
Q ss_pred EEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 338 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 338 ~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
...-..+. ........+... + .+++.|+.++ .|.+||+.+.+.
T Consensus 352 ~~~~~~~~---~~~~~v~~~~~~--~--~~l~s~~~dg----~v~iwd~~~~~~ 394 (445)
T 2ovr_B 352 LQTLQGPN---KHQSAVTCLQFN--K--NFVITSSDDG----TVKLWDLKTGEF 394 (445)
T ss_dssp EEEECSTT---SCSSCEEEEEEC--S--SEEEEEETTS----EEEEEETTTCCE
T ss_pred EEEEccCC---CCCCCEEEEEEC--C--CEEEEEeCCC----eEEEEECCCCce
Confidence 33221111 011112223332 3 3566776543 688898887664
No 40
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.19 E-value=0.02 Score=53.99 Aligned_cols=159 Identities=9% Similarity=-0.089 Sum_probs=98.4
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEE
Q 009910 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (522)
Q Consensus 148 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 227 (522)
+..++...++.||+..|..+ .+.++|+++++-..-- ++..-++..++..+++||+.... .+.++
T Consensus 56 ftqGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~ 119 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLF 119 (268)
T ss_dssp CEEEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEE
T ss_pred ccceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEE
Confidence 44677777999999988753 2889999998743221 33344566778889999998543 35699
Q ss_pred EEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccce-EEE
Q 009910 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-CGV 306 (522)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~-~~~ 306 (522)
+||+++.+-..-- +.+-.+.+.+ .+++.+|+.-| .+.++.+|+++.+-..--..+..+.+.... -+.
T Consensus 120 V~D~~Tl~~~~ti-----~~~~eGwGLt-~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERTT-----RYSGEGWGLC-YWNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEETTTTEEEEEE-----ECSSCCCCEE-EETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEEE-----eCCCceeEEe-cCCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999887644321 1122334444 44555888754 357999999986544322211112221111 133
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 307 ~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
..+++||+-- . ..++|.+.|+++.+-..
T Consensus 188 ~~dG~lyanv-w----~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 188 CANGVIYANI-W----HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp EETTEEEEEE-T----TCSEEEEECTTTCBEEE
T ss_pred EeCCEEEEEE-C----CCCeEEEEeCCCCcEEE
Confidence 4488888532 1 23579999999986443
No 41
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.18 E-value=0.1 Score=50.81 Aligned_cols=241 Identities=11% Similarity=0.067 Sum_probs=119.8
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++++++.|+.. ..+.+||+.+.++..+.... .....-.+++.. ++.+++.|+.+. .+.
T Consensus 19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~~~~~dg------~i~ 77 (372)
T 1k8k_C 19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELK----------EHNGQVTGVDWAPDSNRIVTCGTDR------NAY 77 (372)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEE----------CCSSCEEEEEEETTTTEEEEEETTS------CEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeec----------CCCCcccEEEEeCCCCEEEEEcCCC------eEE
Confidence 45566777643 57899999988776655421 111111222222 566667776532 388
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCc-EEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~~ 254 (522)
.||..+.++...... ......-.++... ++.+++.|+.++ .+.+||+.+.. |...... ..+....-.++
T Consensus 78 vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~ 148 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVI--LRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHI-KKPIRSTVLSL 148 (372)
T ss_dssp EEEEETTEEEEEEEC--CCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEE-CTTCCSCEEEE
T ss_pred EEECCCCeeeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeee-ecccCCCeeEE
Confidence 888888887655421 1111112222222 466777776543 36677766543 3332211 11212222233
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCC----------------cEEEeeeCCCCCCCccceEEEEE--CCEEEEEc
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----------------IWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAG 316 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~----------------~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~G 316 (522)
+...+..+++.|+.++ .+..||+... .-..+... .........+.+ ++..++.|
T Consensus 149 ~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp EECTTSSEEEEEETTS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCSSCEEEEEECSSSSEEEEE
T ss_pred EEcCCCCEEEEEcCCC-----CEEEEEcccccccccccccccccccchhhheEec---CCCCCeEEEEEECCCCCEEEEE
Confidence 3333333677776543 5888885411 11122221 111111222222 55677777
Q ss_pred ccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc--CCcccc
Q 009910 317 GGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK--NESSMG 394 (522)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~--~~w~~~ 394 (522)
+.++ .+.+||+.+.+-...-. . .......+.+..+ +.+++.| .+ +.+.+|++.. ++|...
T Consensus 221 ~~d~-----~i~i~d~~~~~~~~~~~--~----~~~~v~~~~~~~~--~~~l~~~-~d----~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 221 SHDS-----TVCLADADKKMAVATLA--S----ETLPLLAVTFITE--SSLVAAG-HD----CFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp ETTT-----EEEEEEGGGTTEEEEEE--C----SSCCEEEEEEEET--TEEEEEE-TT----SSCEEEEEETTTTEEEEC
T ss_pred eCCC-----EEEEEECCCCceeEEEc--c----CCCCeEEEEEecC--CCEEEEE-eC----CeEEEEEccCcCceEEEe
Confidence 7553 48999998765433221 1 1112233444433 3455555 32 2578888888 776554
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.10 E-value=0.056 Score=51.80 Aligned_cols=225 Identities=13% Similarity=0.106 Sum_probs=113.7
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
+++.++.|+.. ..+.+||+.+.+........ .....-.+++.. ++..++.|+.+. .+.
T Consensus 108 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~dg------~v~ 166 (337)
T 1gxr_A 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELT----------SSAPACYALAISPDSKVCFSCCSDG------NIA 166 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEE----------CSSSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCCcceeeecc----------cCCCceEEEEECCCCCEEEEEeCCC------cEE
Confidence 35566666543 46889999887754433311 111111222222 456666666532 388
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (522)
.||+.+.+....-. .... .-.+++.. ++..++.|+.+ ..+.+||+.+.+-.... ..+. .-.+++
T Consensus 167 ~~d~~~~~~~~~~~---~~~~-~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~---~~~~--~v~~~~ 231 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQ---GHTD-GASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQH---DFTS--QIFSLG 231 (337)
T ss_dssp EEETTTTEEEEEEC---CCSS-CEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE---ECSS--CEEEEE
T ss_pred EEeCCCCceeeeee---cccC-ceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeee---cCCC--ceEEEE
Confidence 99998876443321 1111 12222222 46667777643 34889999877543332 1111 122333
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
...+..+++.|+.++ .+..||+.+..-..+... ...-.+++.. ++++++.|+.++ .+.+||+.+
T Consensus 232 ~s~~~~~l~~~~~~~-----~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~~~~~ 296 (337)
T 1gxr_A 232 YCPTGEWLAVGMESS-----NVEVLHVNKPDKYQLHLH-----ESCVLSLKFAYCGKWFVSTGKDN-----LLNAWRTPY 296 (337)
T ss_dssp ECTTSSEEEEEETTS-----CEEEEETTSSCEEEECCC-----SSCEEEEEECTTSSEEEEEETTS-----EEEEEETTT
T ss_pred ECCCCCEEEEEcCCC-----cEEEEECCCCCeEEEcCC-----ccceeEEEECCCCCEEEEecCCC-----cEEEEECCC
Confidence 333333666665433 589999987654333211 1111222222 567777777553 489999888
Q ss_pred CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 009910 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (522)
Q Consensus 335 ~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~ 386 (522)
.+-...... ......+.+..+ +..++.|+.++ .+.+|++
T Consensus 297 ~~~~~~~~~-------~~~v~~~~~s~~--~~~l~~~~~dg----~i~iw~~ 335 (337)
T 1gxr_A 297 GASIFQSKE-------SSSVLSCDISVD--DKYIVTGSGDK----KATVYEV 335 (337)
T ss_dssp CCEEEEEEC-------SSCEEEEEECTT--SCEEEEEETTS----CEEEEEE
T ss_pred CeEEEEecC-------CCcEEEEEECCC--CCEEEEecCCC----eEEEEEE
Confidence 765432211 111233334322 33556666543 4666664
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.08 E-value=0.22 Score=47.45 Aligned_cols=232 Identities=11% Similarity=0.042 Sum_probs=115.3
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
+..++.|+.+ ..+.+++..+.+....-.. ....-.+++.. ++++++.|+.+. .+..
T Consensus 35 ~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~s~~~d~------~i~v 91 (312)
T 4ery_A 35 GEWLASSSAD-----KLIKIWGAYDGKFEKTISG------------HKLGISDVAWSSDSNLLVSASDDK------TLKI 91 (312)
T ss_dssp SSEEEEEETT-----SCEEEEETTTCCEEEEECC------------CSSCEEEEEECTTSSEEEEEETTS------EEEE
T ss_pred CCEEEEeeCC-----CeEEEEeCCCcccchhhcc------------CCCceEEEEEcCCCCEEEEECCCC------EEEE
Confidence 4566666644 3578888877665443220 01111122222 466777777542 4888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 256 (522)
||..+.+-...-. ..... -.++.. -++.+++.|+.+. .+.+||+.+.+-...- ... ...-.+++.
T Consensus 92 wd~~~~~~~~~~~---~~~~~-v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~---~~~-~~~v~~~~~ 157 (312)
T 4ery_A 92 WDVSSGKCLKTLK---GHSNY-VFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTL---PAH-SDPVSAVHF 157 (312)
T ss_dssp EETTTCCEEEEEE---CCSSC-EEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEE---CCC-SSCEEEEEE
T ss_pred EECCCCcEEEEEc---CCCCC-EEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEe---cCC-CCcEEEEEE
Confidence 9998876432211 11111 112222 2456777777654 3889999876543321 111 111112223
Q ss_pred ECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 257 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 257 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
..+..+++.|+.++ .+..||+.+.+-....... ..+ ....+.+ +++.++.|+.++ .+.+||+.+
T Consensus 158 ~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~ 223 (312)
T 4ery_A 158 NRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLIDD--DNP--PVSFVKFSPNGKYILAATLDN-----TLKLWDYSK 223 (312)
T ss_dssp CTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCS--SCC--CEEEEEECTTSSEEEEEETTT-----EEEEEETTT
T ss_pred cCCCCEEEEEeCCC-----cEEEEECCCCceeeEEecc--CCC--ceEEEEECCCCCEEEEEcCCC-----eEEEEECCC
Confidence 33333677776543 5899998876543322110 111 1122222 566677776554 489999987
Q ss_pred CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 335 ~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+-...-. ... ........ ..... .+.+++.|+.++ .|.+||+.+.+
T Consensus 224 ~~~~~~~~--~~~-~~~~~~~~-~~~~~-~~~~l~sg~~dg----~i~vwd~~~~~ 270 (312)
T 4ery_A 224 GKCLKTYT--GHK-NEKYCIFA-NFSVT-GGKWIVSGSEDN----LVYIWNLQTKE 270 (312)
T ss_dssp TEEEEEEC--SSC-CSSSCCCE-EEECS-SSCEEEECCTTS----CEEEEETTTCC
T ss_pred CcEEEEEE--ecC-CceEEEEE-EEEeC-CCcEEEEECCCC----EEEEEECCCch
Confidence 65433221 111 11111111 11111 234667777654 58889987765
No 44
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.07 E-value=0.2 Score=48.46 Aligned_cols=189 Identities=12% Similarity=0.025 Sum_probs=98.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.+++.|+.+. .+..+|+.+.+-...-.. .+. .. .+++. -+++.++.|+.+ ..+.+||..+.
T Consensus 91 ~~~~l~s~s~D~------~i~lWd~~~~~~~~~~~~--~~~-~~-~~~~~spdg~~l~~g~~d------g~v~i~~~~~~ 154 (321)
T 3ow8_A 91 TLPIAASSSLDA------HIRLWDLENGKQIKSIDA--GPV-DA-WTLAFSPDSQYLATGTHV------GKVNIFGVESG 154 (321)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEEC--CTT-CC-CCEEECTTSSEEEEECTT------SEEEEEETTTC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCCEEEEEeC--CCc-cE-EEEEECCCCCEEEEEcCC------CcEEEEEcCCC
Confidence 355666666542 488899988764332211 111 11 12222 356677777654 34788888776
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iy 313 (522)
+-...- .. ....-.+++...+..+++.|+.++ .+.+||+.+++-...-.. ... .-.+++.. +++++
T Consensus 155 ~~~~~~---~~-~~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~--h~~--~v~~l~~spd~~~l 221 (321)
T 3ow8_A 155 KKEYSL---DT-RGKFILSIAYSPDGKYLASGAIDG-----IINIFDIATGKLLHTLEG--HAM--PIRSLTFSPDSQLL 221 (321)
T ss_dssp SEEEEE---EC-SSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC--CSS--CCCEEEECTTSCEE
T ss_pred ceeEEe---cC-CCceEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEcc--cCC--ceeEEEEcCCCCEE
Confidence 533221 11 111122333333433677776553 589999987653322111 011 11122222 66777
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.|+.++. +.+||+.+......- .. .......+.+..++ ..++.|+.++ .|.+||+.+.+
T Consensus 222 ~s~s~dg~-----i~iwd~~~~~~~~~~--~~----h~~~v~~~~~sp~~--~~l~s~s~D~----~v~iwd~~~~~ 281 (321)
T 3ow8_A 222 VTASDDGY-----IKIYDVQHANLAGTL--SG----HASWVLNVAFCPDD--THFVSSSSDK----SVKVWDVGTRT 281 (321)
T ss_dssp EEECTTSC-----EEEEETTTCCEEEEE--CC----CSSCEEEEEECTTS--SEEEEEETTS----CEEEEETTTTE
T ss_pred EEEcCCCe-----EEEEECCCcceeEEE--cC----CCCceEEEEECCCC--CEEEEEeCCC----cEEEEeCCCCE
Confidence 88876654 899999876644322 11 11112333443333 3566777654 58888887654
No 45
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.02 E-value=0.27 Score=47.44 Aligned_cols=243 Identities=15% Similarity=0.043 Sum_probs=122.8
Q ss_pred CCEEEEEcCcCC-CCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.+|+...... ....+.++++|+.+.+-...-... . .....+....++.+|+.+... ..++
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~-~~~~~~~s~dg~~l~v~~~~~------~~v~ 114 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----------L-KPFGATINNTTQTLWFGNTVN------SAVT 114 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----------S-CCCSEEEETTTTEEEEEETTT------TEEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----------C-CcceEEECCCCCEEEEEecCC------CEEE
Confidence 356877653211 112467999999887543332210 0 011112222245688776532 2699
Q ss_pred EEECCCCcEEEeeecCCCCC-----CCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeec-CCCCCCC
Q 009910 177 TFDTETECWSVVEAKGDIPV-----ARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC-TGTGPSP 248 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~-----~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~g~~p~~ 248 (522)
.+|+.+.+-...-..+.... +..-+.++.. ++.+|+.+... -..++++|+.+.+-...-. .+..|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~-- 187 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKMS-- 187 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTTC--
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCcc--
Confidence 99999887433222111110 1112333332 35677765221 2459999998876443321 11111
Q ss_pred CcceEEEE-ECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcC
Q 009910 249 RSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHA 325 (522)
Q Consensus 249 r~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~ 325 (522)
+.++. -+++.+|+... .+.++++|+.+.+-......+.........+++.. ++.+|+..... +
T Consensus 188 ---~~~~~s~dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~ 253 (353)
T 3vgz_A 188 ---TGLALDSEGKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-----A 253 (353)
T ss_dssp ---CCCEEETTTTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS-----S
T ss_pred ---ceEEECCCCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC-----C
Confidence 22333 35565666543 24789999988764433332111111112223333 45677765322 4
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 326 ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 326 ~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
.+++||+.+.+.......+ .+ .+ +.+.. +...+|+.+..+ +.|.++|+.+.+.
T Consensus 254 ~v~~~d~~~~~~~~~~~~~----~~---~~-~~~s~-dg~~l~v~~~~~----~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 254 EVLVVDTRNGNILAKVAAP----ES---LA-VLFNP-ARNEAYVTHRQA----GKVSVIDAKSYKV 306 (353)
T ss_dssp EEEEEETTTCCEEEEEECS----SC---CC-EEEET-TTTEEEEEETTT----TEEEEEETTTTEE
T ss_pred EEEEEECCCCcEEEEEEcC----CC---ce-EEECC-CCCEEEEEECCC----CeEEEEECCCCeE
Confidence 6999999887755433221 11 22 33332 335677765432 3689999877653
No 46
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.97 E-value=0.11 Score=52.54 Aligned_cols=228 Identities=12% Similarity=0.081 Sum_probs=116.9
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 193 (522)
..++++|.....-..+... ..........-+++.+++++... ....++.+|+.+++...+..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~------------~~~v~~~~~Spdg~~la~~s~~~---~~~~i~~~d~~tg~~~~l~~--- 220 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS------------PQPLMSPAWSPDGSKLAYVTFES---GRSALVIQTLANGAVRQVAS--- 220 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE------------SSCEEEEEECTTSSEEEEEECTT---SSCEEEEEETTTCCEEEEEC---
T ss_pred ceEEEEcCCCCCCEEEeCC------------CCcceeeEEcCCCCEEEEEEecC---CCcEEEEEECCCCcEEEeec---
Confidence 6789999887554444331 01111111122455555555432 12469999999988776652
Q ss_pred CCCCCcceEEEEE-CCE-EEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCC
Q 009910 194 IPVARSGHTVVRA-SSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 270 (522)
Q Consensus 194 ~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~ 270 (522)
.+. ...+.+.. +++ |++.+..+. ...++++|+.+.+...+. ..+ ......+.. +++ .+++++...
T Consensus 221 ~~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~---~~~--~~~~~~~~spdg~-~l~~~s~~~ 288 (415)
T 2hqs_A 221 FPR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVT---DGR--SNNTEPTWFPDSQ-NLAFTSDQA 288 (415)
T ss_dssp CSS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECC---CCS--SCEEEEEECTTSS-EEEEEECTT
T ss_pred CCC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCc---CCC--CcccceEECCCCC-EEEEEECCC
Confidence 221 12223222 444 554544322 246999999988876654 211 111222333 445 444443211
Q ss_pred CCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCC
Q 009910 271 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT 349 (522)
Q Consensus 271 ~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 349 (522)
....++.+|+.++.-..+... .....+.+.. +++.+++++.... ...++++|+.+.+...+...
T Consensus 289 --g~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~------ 353 (415)
T 2hqs_A 289 --GRPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSST------ 353 (415)
T ss_dssp --SSCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCS------
T ss_pred --CCcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCC------
Confidence 124799999988765444321 1122222222 5554455443321 35699999999887665421
Q ss_pred CCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 350 SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 350 ~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
. ......+..+++ .+++++..+. ...++++|++....
T Consensus 354 ~--~~~~~~~spdg~--~l~~~s~~~~-~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 354 F--LDETPSLAPNGT--MVIYSSSQGM-GSVLNLVSTDGRFK 390 (415)
T ss_dssp S--SCEEEEECTTSS--EEEEEEEETT-EEEEEEEETTSCCE
T ss_pred C--CcCCeEEcCCCC--EEEEEEcCCC-ccEEEEEECCCCcE
Confidence 1 233344443333 4455553221 23688888876653
No 47
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.97 E-value=0.29 Score=47.13 Aligned_cols=201 Identities=8% Similarity=-0.009 Sum_probs=102.3
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEccccc-ccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKL-YLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
+.+|+.+... +.++++|+.+.+-...-... ...+. ...+..-+.++.. ++.+|+.+... ...+
T Consensus 101 ~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i 166 (353)
T 3vgz_A 101 QTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGK-----ESVI 166 (353)
T ss_dssp TEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESS-----SCEE
T ss_pred CEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCC-----CceE
Confidence 5588876533 47899999887543222210 00000 0001111233332 46677765321 2359
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceE
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (522)
+++|+.+.+-...-+ . .....+.++. .++.+|+... .+.+.+||+.+.+-......+..........
T Consensus 167 ~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFIN 235 (353)
T ss_dssp EEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEE
T ss_pred EEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccce
Confidence 999998876443321 1 1111222333 2356666532 2468899998876443321111111111222
Q ss_pred EEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEE
Q 009910 254 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 254 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~y 330 (522)
++.. +++.+|+.... .+.+++||+.+.+....... +.+ ...+.. ++.+|+.+..+ +.+.++
T Consensus 236 ~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~---~~~---~~~~~s~dg~~l~v~~~~~-----~~v~~~ 299 (353)
T 3vgz_A 236 ISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAA---PES---LAVLFNPARNEAYVTHRQA-----GKVSVI 299 (353)
T ss_dssp EEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEEC---SSC---CCEEEETTTTEEEEEETTT-----TEEEEE
T ss_pred EEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEc---CCC---ceEEECCCCCEEEEEECCC-----CeEEEE
Confidence 3333 45556665432 35799999988776544443 222 123332 44678776533 459999
Q ss_pred ECCCCceEEe
Q 009910 331 DILKGEWSVA 340 (522)
Q Consensus 331 d~~~~~W~~~ 340 (522)
|+.+.+....
T Consensus 300 d~~~~~~~~~ 309 (353)
T 3vgz_A 300 DAKSYKVVKT 309 (353)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCeEEEE
Confidence 9988765543
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.95 E-value=0.41 Score=48.41 Aligned_cols=147 Identities=10% Similarity=0.103 Sum_probs=79.4
Q ss_pred ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 206 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
.++.+++.|+.++ .+.+||+.+.+-...- .... ..-.+++...+...++.|+.++ .+.+||+.+.
T Consensus 278 ~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~-~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~ 342 (464)
T 3v7d_B 278 GHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHT-DRIYSTIYDHERKRCISASMDT-----TIRIWDLENG 342 (464)
T ss_dssp EETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCS-SCEEEEEEETTTTEEEEEETTS-----CEEEEETTTT
T ss_pred CCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCC-CCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Confidence 3455666676543 4889999876543322 1111 1122333333332666676543 4999998876
Q ss_pred cEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCcc
Q 009910 286 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (522)
Q Consensus 286 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~ 365 (522)
+-.. .. ........++...+..++.|+.++ .+.+||+.+..-...... ......+.+...++
T Consensus 343 ~~~~--~~---~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~- 404 (464)
T 3v7d_B 343 ELMY--TL---QGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHH-------TNLSAITTFYVSDN- 404 (464)
T ss_dssp EEEE--EE---CCCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEEC-------TTCCCEEEEEECSS-
T ss_pred cEEE--EE---eCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecC-------CCCccEEEEEeCCC-
Confidence 4322 22 111222334445677777777664 389999987653322211 11123334443333
Q ss_pred EEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 366 FLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 366 ~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
+++.|+ + +.|.+||+++.+-
T Consensus 405 -~l~~~~-d----g~i~iwd~~~g~~ 424 (464)
T 3v7d_B 405 -ILVSGS-E----NQFNIYNLRSGKL 424 (464)
T ss_dssp -EEEEEE-T----TEEEEEETTTCCE
T ss_pred -EEEEec-C----CeEEEEECCCCcE
Confidence 666666 2 3699999988764
No 49
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.91 E-value=0.24 Score=46.93 Aligned_cols=255 Identities=7% Similarity=-0.065 Sum_probs=130.7
Q ss_pred CCCceEEeeecCCCCCCccceEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (522)
...+.+.+... .....+.+.. ++.||+.+... +.+++||+.+. ....... ...-
T Consensus 16 ~~~~~~~l~~~-----~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~-~~~~~~~-------------~~~~ 71 (296)
T 3e5z_A 16 AGAEARRLADG-----FTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ-LSPEMHP-------------SHHQ 71 (296)
T ss_dssp TTCCCEEEECC-----CSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC-EEEEESS-------------CSSE
T ss_pred CCCcEEEEecC-----CccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC-eEEEECC-------------CCCc
Confidence 44555666521 2233344444 34588887533 47899999987 5544321 1112
Q ss_pred eEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec-CCCCCCCcceEEEEECCEEEEE----cccCC-----
Q 009910 150 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK-GDIPVARSGHTVVRASSVLILF----GGEDG----- 218 (522)
Q Consensus 150 ~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~p~~r~~~~~~~~~~~iyv~----GG~~~----- 218 (522)
.+++.. ++++|+.... ...+++||+.+++.+.+... ...+..+....++.-++++|+. |....
T Consensus 72 ~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~ 145 (296)
T 3e5z_A 72 NGHCLNKQGHLIACSHG------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG 145 (296)
T ss_dssp EEEEECTTCCEEEEETT------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred ceeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence 334333 5678776432 13499999988887766421 1111111122222235788886 43210
Q ss_pred --CCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcC-CCcE-EEeeeC
Q 009910 219 --KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE-TMIW-TRIKIR 293 (522)
Q Consensus 219 --~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W-~~~~~~ 293 (522)
.......+++||+. .+...+.. ....+ ...+.. +++ +++.... .+.+++||+. +++. ......
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s~dg~-~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~ 213 (296)
T 3e5z_A 146 GEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFLPSGN-LLVSDTG-----DNATHRYCLNARGETEYQGVHF 213 (296)
T ss_dssp CCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEECTTSC-EEEEETT-----TTEEEEEEECSSSCEEEEEEEE
T ss_pred ccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEECCCCC-EEEEeCC-----CCeEEEEEECCCCcCcCCCeEe
Confidence 11113479999987 55555531 22111 233333 344 4454432 2469999986 5555 221111
Q ss_pred CCCCCCccceEEEE-ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcC
Q 009910 294 GFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (522)
Q Consensus 294 ~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG 372 (522)
...... -.+++. -+++||+.. . +.|.+||++......+.. +. . ...+++...+...||+...
T Consensus 214 -~~~~~~-p~~i~~d~~G~l~v~~--~-----~~v~~~~~~g~~~~~~~~-~~----~---~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 214 -TVEPGK-TDGLRVDAGGLIWASA--G-----DGVHVLTPDGDELGRVLT-PQ----T---TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp -CCSSSC-CCSEEEBTTSCEEEEE--T-----TEEEEECTTSCEEEEEEC-SS----C---CCEEEEESTTSCEEEEEET
T ss_pred -eCCCCC-CCeEEECCCCCEEEEc--C-----CeEEEECCCCCEEEEEEC-CC----C---ceeEEEECCCCCEEEEEcC
Confidence 111111 112333 267888876 1 359999998665554442 11 1 2334443334456776543
Q ss_pred CCCCCCCcEEEEEcccCCc
Q 009910 373 IKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 373 ~~~~~~~~v~~y~~~~~~w 391 (522)
. .++.+++++.+-
T Consensus 277 ~------~l~~~~~~~~~~ 289 (296)
T 3e5z_A 277 T------EFWSIETNVRGL 289 (296)
T ss_dssp T------EEEEEECSCCBC
T ss_pred C------eEEEEEcccccc
Confidence 2 589999887753
No 50
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.90 E-value=0.16 Score=50.63 Aligned_cols=234 Identities=11% Similarity=0.102 Sum_probs=115.5
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++.+++.|+.+ ..+.+||+.+.+....-. ... ..-..+..++.+++.|+.+ ..+..
T Consensus 145 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~------------~~~-~~v~~~~~~~~~l~~~~~d------g~i~i 200 (401)
T 4aez_A 145 DGSFLSVGLGN-----GLVDIYDVESQTKLRTMA------------GHQ-ARVGCLSWNRHVLSSGSRS------GAIHH 200 (401)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEEC------------CCS-SCEEEEEEETTEEEEEETT------SEEEE
T ss_pred CCCEEEEECCC-----CeEEEEECcCCeEEEEec------------CCC-CceEEEEECCCEEEEEcCC------CCEEE
Confidence 45566666543 468899988765433221 011 1123334456677777654 25888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 256 (522)
||..+..-...... .....-.+++.. ++.+++.|+.++ .+.+||+.+.+-...-. . ....-.+++.
T Consensus 201 ~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~--~--~~~~v~~~~~ 267 (401)
T 4aez_A 201 HDVRIANHQIGTLQ---GHSSEVCGLAWRSDGLQLASGGNDN------VVQIWDARSSIPKFTKT--N--HNAAVKAVAW 267 (401)
T ss_dssp EETTSSSCEEEEEE---CCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTCSSEEEEEC--C--CSSCCCEEEE
T ss_pred EecccCcceeeEEc---CCCCCeeEEEEcCCCCEEEEEeCCC------eEEEccCCCCCccEEec--C--CcceEEEEEE
Confidence 99874332211110 011111222222 567777777643 48899998765333210 1 1111223333
Q ss_pred EC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CC-EEEEEcccCCCCCcCeEEEEECC
Q 009910 257 YD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 257 ~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
.. +..+++.||... -..+..||..+..-...-.. .. .-.+++.. ++ .+++.+|... +.+.+||..
T Consensus 268 ~p~~~~ll~~~~gs~---d~~i~i~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~ 335 (401)
T 4aez_A 268 CPWQSNLLATGGGTM---DKQIHFWNAATGARVNTVDA---GS--QVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYS 335 (401)
T ss_dssp CTTSTTEEEEECCTT---TCEEEEEETTTCCEEEEEEC---SS--CEEEEEECSSSSEEEEEECTTT----CEEEEEEEE
T ss_pred CCCCCCEEEEecCCC---CCEEEEEECCCCCEEEEEeC---CC--cEEEEEECCCCCeEEEEeecCC----CcEEEEecC
Confidence 33 333677664211 23699999887654433222 11 11222222 34 4544444332 348899988
Q ss_pred CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 334 ~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.....+...+.. ......+.+..++ .+++.||.++ .|.+|++.+.+
T Consensus 336 ~~~~~~~~~~~~h----~~~v~~~~~s~dg--~~l~s~~~dg----~i~iw~~~~~~ 382 (401)
T 4aez_A 336 SSGLTKQVDIPAH----DTRVLYSALSPDG--RILSTAASDE----NLKFWRVYDGD 382 (401)
T ss_dssp TTEEEEEEEEECC----SSCCCEEEECTTS--SEEEEECTTS----EEEEEECCC--
T ss_pred CccceeEEEecCC----CCCEEEEEECCCC--CEEEEEeCCC----cEEEEECCCCc
Confidence 8766665432211 1122333443323 3566676543 68889987765
No 51
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.88 E-value=0.041 Score=51.43 Aligned_cols=229 Identities=11% Similarity=0.061 Sum_probs=116.0
Q ss_pred cccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCC-CcEEEeeec
Q 009910 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWSVVEAK 191 (522)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~ 191 (522)
...++++|+.+.+...+... ..........-+++.+++++. ..++++|+.+ .+...+..
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~------------~~~v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~~- 80 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT------------PELFEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVDT- 80 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE------------SSCCEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECCC-
T ss_pred ceeEEEEeCCCCceeeeccC------------CcceEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEecc-
Confidence 46789999998877655431 111111122224555555542 2599999998 77665542
Q ss_pred CCCCC-CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCC
Q 009910 192 GDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 269 (522)
Q Consensus 192 ~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~ 269 (522)
.+. .........-+++.+++++.... ....+|.+|..+..-..+.. .. . ....+.. +++.|++.++.+
T Consensus 81 --~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~---~~-~--~~~~~~spdg~~l~~~~~~~ 150 (297)
T 2ojh_A 81 --GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK---NL-P--SYWHGWSPDGKSFTYCGIRD 150 (297)
T ss_dssp --TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS---SS-S--EEEEEECTTSSEEEEEEEET
T ss_pred --ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec---CC-C--ccceEECCCCCEEEEEECCC
Confidence 111 12122222235666666654332 24679999988877655531 11 1 2223333 445454444332
Q ss_pred CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE-EEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCC
Q 009910 270 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 347 (522)
Q Consensus 270 ~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 347 (522)
. ...+|.++..+.....+... + ......+.. +++ |++.+..++ ...+|.+++.......+....
T Consensus 151 ~---~~~l~~~~~~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~--- 216 (297)
T 2ojh_A 151 Q---VFDIYSMDIDSGVETRLTHG---E--GRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDSA--- 216 (297)
T ss_dssp T---EEEEEEEETTTCCEEECCCS---S--SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCCS---
T ss_pred C---ceEEEEEECCCCcceEcccC---C--CccccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecCC---
Confidence 2 13678888877766655432 1 111222222 444 444443332 356888888777766654211
Q ss_pred CCCCCCcEEEEEeeCCccEEEEEcCCCCC-------CCCcEEEEEcccCCc
Q 009910 348 VTSNKGFTLVLVQHKEKDFLVAFGGIKKE-------PSNQVEVLSIEKNES 391 (522)
Q Consensus 348 ~~~r~~~~~~~~~~~~~~~l~v~GG~~~~-------~~~~v~~y~~~~~~w 391 (522)
.....+.+..++ ..|+ +++..+. ....++++|+++.+.
T Consensus 217 ----~~~~~~~~s~dg-~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 217 ----YGDWFPHPSPSG-DKVV-FVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp ----EEEEEEEECTTS-SEEE-EEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ----cccCCeEECCCC-CEEE-EEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 112233343333 3343 4433221 124688898877654
No 52
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.76 E-value=0.45 Score=46.18 Aligned_cols=218 Identities=12% Similarity=0.155 Sum_probs=114.2
Q ss_pred CCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcC-CCcEEEcccccccCCCCCCCCCCCccce
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGH 150 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (522)
...+|+.+...... ......+++..++.+|+.|- . ..+++ ..+ ..+|+.+.... ..+... .
T Consensus 64 gG~tW~~~~~~~~~-~~~~~~~i~~~~~~~~~~g~-~-----g~i~~-S~DgG~tW~~~~~~~---------~~~~~~-~ 125 (327)
T 2xbg_A 64 GGQTWEPRTLVLDH-SDYRFNSVSFQGNEGWIVGE-P-----PIMLH-TTDGGQSWSQIPLDP---------KLPGSP-R 125 (327)
T ss_dssp TTSSCEECCCCCSC-CCCEEEEEEEETTEEEEEEE-T-----TEEEE-ESSTTSSCEECCCCT---------TCSSCE-E
T ss_pred CCCCCeECCCCCCC-CCccEEEEEecCCeEEEEEC-C-----CeEEE-ECCCCCCceECcccc---------CCCCCe-E
Confidence 45689998621111 12233444455678888752 1 23444 333 57999987521 112222 3
Q ss_pred EEE-EECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEE
Q 009910 151 SLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 228 (522)
Q Consensus 151 ~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 228 (522)
.++ .-++.+|+.|... .+++-+-.-.+|+.+.. +.....+.++.. ++.+|++|- . ..+++
T Consensus 126 ~i~~~~~~~~~~~~~~g-------~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~-~------G~~~~ 187 (327)
T 2xbg_A 126 LIKALGNGSAEMITNVG-------AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSS-R------GSFYS 187 (327)
T ss_dssp EEEEEETTEEEEEETTC-------CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEET-T------SSEEE
T ss_pred EEEEECCCCEEEEeCCc-------cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEEC-C------CcEEE
Confidence 333 3467888877421 26555444578999873 222333444443 456776652 1 23555
Q ss_pred EEcC-CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCcEEEeeeCCCCCCCccceEEE
Q 009910 229 FDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGV 306 (522)
Q Consensus 229 yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~p~~r~~~~~~ 306 (522)
-+-. -.+|+.+. .+.+...+.++...+..+|+.+.. ..+++.+.. ..+|+.+... ..+.....++++
T Consensus 188 S~d~gG~tW~~~~----~~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~-~~~~~~~~~~v~ 256 (327)
T 2xbg_A 188 TWEPGQTAWEPHN----RTTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLSP-LRRNSVGFLDLA 256 (327)
T ss_dssp EECTTCSSCEEEE----CCSSSCEEEEEECTTSCEEEEETT------TEEEEEETTEEEEECCCBCT-TSSCCSCEEEEE
T ss_pred EeCCCCCceeECC----CCCCCccceeEECCCCCEEEEeCC------ceEEEecCCCCCeeEeccCC-cccCCcceEEEE
Confidence 4333 57899985 233444555555444447777632 135555333 5689887531 112222223333
Q ss_pred EE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 307 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 307 ~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
.. ++.+|++|+.. .+++-.-...+|+.+..
T Consensus 257 ~~~~~~~~~~g~~g------~i~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 257 YRTPNEVWLAGGAG------ALLCSQDGGQTWQQDVD 287 (327)
T ss_dssp ESSSSCEEEEESTT------CEEEESSTTSSCEECGG
T ss_pred ecCCCEEEEEeCCC------eEEEeCCCCcccEEcCc
Confidence 33 56888887632 25544444679998764
No 53
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.75 E-value=0.46 Score=46.11 Aligned_cols=258 Identities=11% Similarity=0.092 Sum_probs=131.8
Q ss_pred CCCceEEeeecCCCCCCccceEEEEE-CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce
Q 009910 72 NSENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~ 150 (522)
....|+.+. .|....-.++... .+.+|++|- . ..+++-.-...+|+.+... ...+.....
T Consensus 23 ~g~~W~~~~----~~~~~~~~~v~~~~~~~~~~~G~-~-----g~i~~s~DgG~tW~~~~~~---------~~~~~~~~~ 83 (327)
T 2xbg_A 23 DYNPWEAIQ----LPTTATILDMSFIDRHHGWLVGV-N-----ATLMETRDGGQTWEPRTLV---------LDHSDYRFN 83 (327)
T ss_dssp SSCCEEEEE----CSCSSCEEEEEESSSSCEEEEET-T-----TEEEEESSTTSSCEECCCC---------CSCCCCEEE
T ss_pred CCCCceEee----cCCCCcEEEEEECCCCcEEEEcC-C-----CeEEEeCCCCCCCeECCCC---------CCCCCccEE
Confidence 667899986 2333333333333 456888653 1 1244433334689998642 111222234
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCCCccCcEEEE
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMF 229 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~y 229 (522)
++...++.+|+.|-. ..+++-+-.-.+|+.+.....+|.. ...++ .-++.+|+.|.. ..+++-
T Consensus 84 ~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~-------g~v~~S 147 (327)
T 2xbg_A 84 SVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV-------GAIYRT 147 (327)
T ss_dssp EEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT-------CCEEEE
T ss_pred EEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC-------ccEEEE
Confidence 445557888887532 1355543335789998642122221 23333 346788887642 124443
Q ss_pred EcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCcEEEeeeCCCCCCCccceEEEEE
Q 009910 230 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC 308 (522)
Q Consensus 230 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~p~~r~~~~~~~~ 308 (522)
+-.-.+|+.+.. +.+...+.++...+..++++|-. ..+++-+-. ..+|+.+.. +.+...+.++..
T Consensus 148 ~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~ 213 (327)
T 2xbg_A 148 KDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFT 213 (327)
T ss_dssp SSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEEC----CSSSCEEEEEEC
T ss_pred cCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECCC----CCCCccceeEEC
Confidence 333568999862 22233445555545546666532 246665433 678999854 233344444443
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECC-CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 009910 309 -GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (522)
Q Consensus 309 -~~~iyi~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~ 386 (522)
++.+|+++.. ..+++.+.+ ..+|+.+...+. +. ..++..+.... ...+|+.|+.. .+++-.=
T Consensus 214 ~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~~--~~-~~~~~~v~~~~--~~~~~~~g~~g-----~i~~S~D 277 (327)
T 2xbg_A 214 PDGRLWMIVNG------GKIAFSDPDNSENWGELLSPLR--RN-SVGFLDLAYRT--PNEVWLAGGAG-----ALLCSQD 277 (327)
T ss_dssp TTSCEEEEETT------TEEEEEETTEEEEECCCBCTTS--SC-CSCEEEEEESS--SSCEEEEESTT-----CEEEESS
T ss_pred CCCCEEEEeCC------ceEEEecCCCCCeeEeccCCcc--cC-CcceEEEEecC--CCEEEEEeCCC-----eEEEeCC
Confidence 6678877642 225555433 678998653211 11 12233333332 34588887642 2433222
Q ss_pred ccCCcccc
Q 009910 387 EKNESSMG 394 (522)
Q Consensus 387 ~~~~w~~~ 394 (522)
...+|...
T Consensus 278 gG~tW~~~ 285 (327)
T 2xbg_A 278 GGQTWQQD 285 (327)
T ss_dssp TTSSCEEC
T ss_pred CCcccEEc
Confidence 34567654
No 54
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.74 E-value=0.25 Score=47.22 Aligned_cols=261 Identities=11% Similarity=0.068 Sum_probs=119.8
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcC--CCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCcee
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (522)
+.||+.+... ..+.+|++. +.++..+.... ... .-..++.. ++.||+.+... ..
T Consensus 50 ~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~s~dg~~l~~~~~~~------~~ 107 (343)
T 1ri6_A 50 RYLYVGVRPE-----FRVLAYRIAPDDGALTFAAESA----------LPG-SLTHISTDHQGQFVFVGSYNA------GN 107 (343)
T ss_dssp SEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEE----------CSS-CCSEEEECTTSSEEEEEETTT------TE
T ss_pred CEEEEeecCC-----CeEEEEEecCCCCceeeccccc----------cCC-CCcEEEEcCCCCEEEEEecCC------Ce
Confidence 4466655321 467777776 66777655421 111 11222222 34566654321 24
Q ss_pred EEEEECCCCc-EEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCCccCcEEEEEcCC-CcEEEee--cCCCCCCC
Q 009910 175 VWTFDTETEC-WSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLH--CTGTGPSP 248 (522)
Q Consensus 175 v~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~--~~g~~p~~ 248 (522)
+.+||+..+. ...+.. .+....-+.++.. + ..||+.+..+ ..+.+||+.+ .+...+. .. ..+..
T Consensus 108 i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 177 (343)
T 1ri6_A 108 VSVTRLEDGLPVGVVDV---VEGLDGCHSANISPDNRTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEV-TTVEG 177 (343)
T ss_dssp EEEEEEETTEEEEEEEE---ECCCTTBCCCEECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEE-ECSTT
T ss_pred EEEEECCCCcccccccc---ccCCCCceEEEECCCCCEEEEecCCC------CEEEEEEecCCCceeeeccccc-ccCCC
Confidence 7777774322 222222 1111122333332 3 4676654222 4589999987 6665322 10 11111
Q ss_pred CcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcC--CCcEEEeeeCCCCCCC---ccceEEEEE---CCEEEEEcccC
Q 009910 249 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFHPSP---RAGCCGVLC---GTKWYIAGGGS 319 (522)
Q Consensus 249 r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~p~~---r~~~~~~~~---~~~iyi~GG~~ 319 (522)
..-..++.. +++.+|+.+.. .+.+.+||+. +..++.+......|.. ......+.+ +..+|+.+..+
T Consensus 178 ~~~~~~~~~pdg~~l~~~~~~-----~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 178 AGPRHMVFHPNEQYAYCVNEL-----NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETT-----TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CCcceEEECCCCCEEEEEeCC-----CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 111123333 34456666533 2468888884 4555433322111221 112222333 34676655432
Q ss_pred CCCCcCeEEEEECC--CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEE--EcccCCccccc
Q 009910 320 RKKRHAETLIFDIL--KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL--SIEKNESSMGR 395 (522)
Q Consensus 320 ~~~~~~~v~~yd~~--~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y--~~~~~~w~~~~ 395 (522)
+.+.+||+. +.+++.+...+... . ...+.+.. +...||+.++.+ +.+.+| |+++.++....
T Consensus 253 -----~~i~v~d~~~~~~~~~~~~~~~~~~----~-~~~~~~s~-dg~~l~~~~~~~----~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 253 -----SLITVFSVSEDGSVLSKEGFQPTET----Q-PRGFNVDH-SGKYLIAAGQKS----HHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp -----TEEEEEEECTTSCCEEEEEEEECSS----S-CCCEEECT-TSSEEEEECTTT----CEEEEEEEETTTTEEEEEE
T ss_pred -----CEEEEEEEcCCCCceEEeeeecCCC----c-cceEEECC-CCCEEEEecCCC----CeEEEEEEcCCCceeeEcc
Confidence 358888887 55666655433211 1 12233332 334566655432 246666 55566655432
Q ss_pred cCCCCCCCCceEEeecC
Q 009910 396 RSTPNAKGPGQLLFEKR 412 (522)
Q Consensus 396 ~~~~~~~~~~~~~fgg~ 412 (522)
....+..|..+.|...
T Consensus 318 -~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 318 -RYAVGQGPMWVVVNAH 333 (343)
T ss_dssp -EEECSSSCCEEEEEEE
T ss_pred -ccccCCCCeeEEEEcc
Confidence 2223355666666653
No 55
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.71 E-value=0.35 Score=46.89 Aligned_cols=234 Identities=11% Similarity=0.055 Sum_probs=113.4
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.+++.|+.+ ..+.++|..+..-...-. .....-.+++. -++.+++.||.+. .+.
T Consensus 66 d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~s~~~d~------~v~ 122 (340)
T 1got_B 66 DSRLLLSASQD-----GKLIIWDSYTTNKVHAIP------------LRSSWVMTCAYAPSGNYVACGGLDN------ICS 122 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTCCEEEEEE------------CSSSCEEEEEECTTSSEEEEEETTC------EEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEee------------cCCccEEEEEECCCCCEEEEEeCCC------eEE
Confidence 34566666644 467888877654322211 00111112222 2466677777542 477
Q ss_pred EEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
.||+.+.. ........ ............-++. ++.|+.+ ..+.+||+.+.+-...- ... ...-.++
T Consensus 123 iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~~---~~h-~~~v~~~ 190 (340)
T 1got_B 123 IYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTTF---TGH-TGDVMSL 190 (340)
T ss_dssp EEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEEE---CCC-SSCEEEE
T ss_pred EEECccCCCcceeEEEec-CCCccEEEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEEE---cCC-CCceEEE
Confidence 88887653 12111100 0111111111223455 4555543 34888999887644322 111 1112233
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
+...+..+++.|+.++ .+..||+.+..-...-. .....-.+++.. ++++++.|+.++. +.+||+.
T Consensus 191 ~~~~~~~~l~sg~~d~-----~v~~wd~~~~~~~~~~~----~h~~~v~~v~~~p~~~~l~s~s~d~~-----v~iwd~~ 256 (340)
T 1got_B 191 SLAPDTRLFVSGACDA-----SAKLWDVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDAT-----CRLFDLR 256 (340)
T ss_dssp EECTTSSEEEEEETTS-----CEEEEETTTCSEEEEEC----CCSSCEEEEEECTTSSEEEEEETTSC-----EEEEETT
T ss_pred EECCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEc----CCcCCEEEEEEcCCCCEEEEEcCCCc-----EEEEECC
Confidence 3344443777777654 48899987764332211 111111222222 5677788886654 8899988
Q ss_pred CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 334 ~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.+-......+ ........+.+..+ +.+++.|+.++ .|.+||..+.+
T Consensus 257 ~~~~~~~~~~~----~~~~~v~~~~~s~~--g~~l~~g~~d~----~i~vwd~~~~~ 303 (340)
T 1got_B 257 ADQELMTYSHD----NIICGITSVSFSKS--GRLLLAGYDDF----NCNVWDALKAD 303 (340)
T ss_dssp TTEEEEEECCT----TCCSCEEEEEECTT--SSEEEEEETTS----EEEEEETTTCC
T ss_pred CCcEEEEEccC----CcccceEEEEECCC--CCEEEEECCCC----eEEEEEcccCc
Confidence 76533221111 11122344444433 33667777543 58888876654
No 56
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=0.057 Score=59.46 Aligned_cols=224 Identities=8% Similarity=-0.039 Sum_probs=119.2
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC-
Q 009910 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG- 192 (522)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~- 192 (522)
.+++||+.+.+++..... ..+...-.+++.. ++.|++-. . .-+++||+.+++|.......
T Consensus 428 Gl~~~~~~~~~~~~~~~~----------~~~~~~v~~i~~d~~g~lwigt-~-------~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELE----------KNELLDVRVFYEDKNKKIWIGT-H-------AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EEEEECSSSCEEEECCST----------TTCCCCEEEEEECTTSEEEEEE-T-------TEEEEEESSSSSCCEEECTTT
T ss_pred CEEEEcCCCCcEEEeccC----------CCCCCeEEEEEECCCCCEEEEE-C-------CceEEEeCCCCeEEecccCcc
Confidence 456666666666555421 0111122344444 46777642 2 13999999999988765311
Q ss_pred -CCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCC
Q 009910 193 -DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 270 (522)
Q Consensus 193 -~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~ 270 (522)
.++... -.+++.. ++.|++- ... ..+++||+.+.+++.......+|.... .+.+.-.+..|++...
T Consensus 490 ~~~~~~~-i~~i~~d~~g~lWig-t~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~--- 557 (781)
T 3v9f_A 490 SQLLENF-VRSIAQDSEGRFWIG-TFG------GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG--- 557 (781)
T ss_dssp SSCSCSC-EEEEEECTTCCEEEE-ESS------SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET---
T ss_pred cccccce-eEEEEEcCCCCEEEE-EcC------CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC---
Confidence 111111 1223232 4677773 221 348999999999988753223332221 1222222333666421
Q ss_pred CCCCCcE-EEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCC
Q 009910 271 SKTLNDL-YSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 348 (522)
Q Consensus 271 ~~~~~~v-~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 348 (522)
+.+ ++||+++++++.......+|.... .+++.. ++.|++.+. +-+.+||+.+.+++....... .+
T Consensus 558 ----~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dG-l~ 624 (781)
T 3v9f_A 558 ----EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNN-IP 624 (781)
T ss_dssp ----TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGT-CC
T ss_pred ----CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCC-cc
Confidence 246 899999988887765322333322 233333 577887642 228999999999887654222 11
Q ss_pred CCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 349 ~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
.......++....+ +. +.|||.. .+.+|+|+..
T Consensus 625 ~~~f~~~~~~~~~~--G~-l~~g~~~-----Gl~~f~p~~~ 657 (781)
T 3v9f_A 625 QGSFISGCVTKDHN--GL-IYFGSIN-----GLCFFNPDIA 657 (781)
T ss_dssp SSCEEEEEEEECTT--SC-EEEEETT-----EEEEECSCCG
T ss_pred ccccccCceEECCC--CE-EEEECCC-----ceEEEChhhc
Confidence 11111233333322 33 4567765 4888887654
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.23 Score=49.03 Aligned_cols=229 Identities=10% Similarity=-0.008 Sum_probs=112.4
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.+++.|+.+ ..+.+||.....-..+... ...-.+++.. ++..++.|+.+. .+.
T Consensus 119 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~d~------~i~ 174 (425)
T 1r5m_A 119 DGNSIVTGVEN-----GELRLWNKTGALLNVLNFH-------------RAPIVSVKWNKDGTHIISMDVEN------VTI 174 (425)
T ss_dssp TSSEEEEEETT-----SCEEEEETTSCEEEEECCC-------------CSCEEEEEECTTSSEEEEEETTC------CEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeeccCC-------------CccEEEEEECCCCCEEEEEecCC------eEE
Confidence 45566777644 4688888554443333320 1111222222 455556666432 388
Q ss_pred EEECCCCcEEEeeecCCCCCCC--------------cceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC
Q 009910 177 TFDTETECWSVVEAKGDIPVAR--------------SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r--------------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 242 (522)
.||..+.+....-. .+... ...+++...+..++.|+.+ ..+.+||+.+.+-...-
T Consensus 175 iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~~~~~~-- 243 (425)
T 1r5m_A 175 LWNVISGTVMQHFE---LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GAIFVYQITEKTPTGKL-- 243 (425)
T ss_dssp EEETTTTEEEEEEC---CC---------------CCCBSCCEEEETTEEEEECGG------GCEEEEETTCSSCSEEE--
T ss_pred EEECCCCcEEEEee---ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------CeEEEEEcCCCceeeee--
Confidence 89998876543321 11111 0222333333446666543 35899999876432221
Q ss_pred CCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCC
Q 009910 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK 321 (522)
Q Consensus 243 g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~ 321 (522)
.. ....-.+++...+..+++.|+.++ .+.+||+.+......-. .....-.+++.. ++ +++.|+.++
T Consensus 244 -~~-~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d~- 310 (425)
T 1r5m_A 244 -IG-HHGPISVLEFNDTNKLLLSASDDG-----TLRIWHGGNGNSQNCFY----GHSQSIVSASWVGDD-KVISCSMDG- 310 (425)
T ss_dssp -CC-CSSCEEEEEEETTTTEEEEEETTS-----CEEEECSSSBSCSEEEC----CCSSCEEEEEEETTT-EEEEEETTS-
T ss_pred -cc-CCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCccceEec----CCCccEEEEEECCCC-EEEEEeCCC-
Confidence 11 111122333333332666666443 58889887654322211 111122233333 45 666666553
Q ss_pred CCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 322 ~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+.+||+.+.+-...... .......+.+... +.+++.|+.++ .|.+||+.+.+
T Consensus 311 ----~i~i~d~~~~~~~~~~~~------~~~~i~~~~~s~~--~~~l~~~~~dg----~i~i~~~~~~~ 363 (425)
T 1r5m_A 311 ----SVRLWSLKQNTLLALSIV------DGVPIFAGRISQD--GQKYAVAFMDG----QVNVYDLKKLN 363 (425)
T ss_dssp ----EEEEEETTTTEEEEEEEC------TTCCEEEEEECTT--SSEEEEEETTS----CEEEEECHHHH
T ss_pred ----cEEEEECCCCcEeEeccc------CCccEEEEEEcCC--CCEEEEEECCC----eEEEEECCCCc
Confidence 489999987654332211 1112233444332 33666676543 58999987654
No 58
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.12 Score=50.35 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=103.0
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-C--CEEEEEcccCCCCCCceeE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v 175 (522)
+.+++.|+.+ ..+.+||+.+.+|..+.... .....-.+++.. + +.+++.|+.+. .+
T Consensus 69 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~~~~~d~------~i 127 (379)
T 3jrp_A 69 GTILASCSYD-----GKVLIWKEENGRWSQIAVHA----------VHSASVNSVQWAPHEYGPLLLVASSDG------KV 127 (379)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTS------EE
T ss_pred CCEEEEeccC-----CEEEEEEcCCCceeEeeeec----------CCCcceEEEEeCCCCCCCEEEEecCCC------cE
Confidence 4566677644 46889999998887766531 111111222222 2 55677776542 48
Q ss_pred EEEECCCCcE-EEeeecCCCCCCCcceEEEEE--------------CCEEEEEcccCCCCCccCcEEEEEcCCC--cEEE
Q 009910 176 WTFDTETECW-SVVEAKGDIPVARSGHTVVRA--------------SSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLP 238 (522)
Q Consensus 176 ~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~ 238 (522)
..||..+..- ...... .....-.+++.. ++.+++.|+.++ .+.+||+.+. .|..
T Consensus 128 ~v~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 128 SVVEFKENGTTSPIIID---AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVL 198 (379)
T ss_dssp EEEECCTTSCCCEEEEE---CCTTCEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEE
T ss_pred EEEecCCCCceeeEEec---CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceee
Confidence 8888877632 111110 011111222222 367778877654 3778887654 3554
Q ss_pred eecCCCCCC-CCcceEEEEECC---cEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEeeeCCCCCCCccceEEEEE-CCE
Q 009910 239 LHCTGTGPS-PRSNHVAALYDD---KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC-GTK 311 (522)
Q Consensus 239 ~~~~g~~p~-~r~~~~~~~~~~---~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~~~ 311 (522)
+. .+.. ...-.+++...+ ..+++.|+.++ .+.+||+.+.. +...... .......-.+++.. +++
T Consensus 199 ~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~ 269 (379)
T 3jrp_A 199 ES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGN 269 (379)
T ss_dssp EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSC
T ss_pred EE---EEecccCcEeEEEECCCCCCCCeEEEEeCCC-----EEEEEeCCCCCccceeeeec-cccCCCcEEEEEEcCCCC
Confidence 43 1111 111223344444 44777777654 48888887653 2211111 00111112222222 667
Q ss_pred EEEEcccCCCCCcCeEEEEECC-CCceEEeccC
Q 009910 312 WYIAGGGSRKKRHAETLIFDIL-KGEWSVAITS 343 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~ 343 (522)
+++.|+.++. +.+||+. ...|..+...
T Consensus 270 ~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 270 VLALSGGDNK-----VTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp CEEEEESSSS-----EEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCc-----EEEEeCCCCCccccccce
Confidence 7777776544 7788876 5678876643
No 59
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.61 E-value=0.18 Score=50.80 Aligned_cols=189 Identities=12% Similarity=0.209 Sum_probs=104.0
Q ss_pred EEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEc
Q 009910 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
++..++..++.|+.+. .+.+||..+.+-...- ......-.+...++.+++.|+.++ .+.+||+
T Consensus 138 ~~~~d~~~l~~g~~dg------~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~sg~~dg------~i~vwd~ 200 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDN------TIKIWDKNTLECKRIL-----TGHTGSVLCLQYDERVIITGSSDS------TVRVWDV 200 (435)
T ss_dssp EEECCSSEEEEEESSS------CEEEEESSSCCEEEEE-----CCCSSCEEEEECCSSEEEEEETTS------CEEEEES
T ss_pred EEEECCCEEEEEeCCC------eEEEEeCCCCeEEEEE-----cCCCCcEEEEEECCCEEEEEcCCC------eEEEEEC
Confidence 4445777777877643 4888998887644332 111112233344777888887654 3889999
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEe-eeCCCCCCCccceEEEEECC
Q 009910 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIRGFHPSPRAGCCGVLCGT 310 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~p~~r~~~~~~~~~~ 310 (522)
.+.+-...- ........++.+.+. +++.|+.++ .+.+||+.+..-... ... ........++..++
T Consensus 201 ~~~~~~~~~-----~~h~~~v~~l~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 266 (435)
T 1p22_A 201 NTGEMLNTL-----IHHCEAVLHLRFNNG-MMVTCSKDR-----SIAVWDMASPTDITLRRVL---VGHRAAVNVVDFDD 266 (435)
T ss_dssp SSCCEEEEE-----CCCCSCEEEEECCTT-EEEEEETTS-----CEEEEECSSSSCCEEEEEE---CCCSSCEEEEEEET
T ss_pred CCCcEEEEE-----cCCCCcEEEEEEcCC-EEEEeeCCC-----cEEEEeCCCCCCceeeeEe---cCCCCcEEEEEeCC
Confidence 887644332 111222344455666 677776543 588999876542211 111 11112223333466
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 311 ~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
..++.|+.++ .+.+||+.+.+-..... . .......+... + .+++.|+.++ .|.+||+.+.+
T Consensus 267 ~~l~s~~~dg-----~i~vwd~~~~~~~~~~~--~----~~~~v~~~~~~--~--~~l~~g~~dg----~i~iwd~~~~~ 327 (435)
T 1p22_A 267 KYIVSASGDR-----TIKVWNTSTCEFVRTLN--G----HKRGIACLQYR--D--RLVVSGSSDN----TIRLWDIECGA 327 (435)
T ss_dssp TEEEEEETTS-----EEEEEETTTCCEEEEEE--C----CSSCEEEEEEE--T--TEEEEEETTS----CEEEEETTTCC
T ss_pred CEEEEEeCCC-----eEEEEECCcCcEEEEEc--C----CCCcEEEEEeC--C--CEEEEEeCCC----eEEEEECCCCC
Confidence 6677777654 48999998765433221 1 11112333332 2 3667777543 58889987765
No 60
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.59 E-value=0.21 Score=47.68 Aligned_cols=236 Identities=10% Similarity=-0.043 Sum_probs=117.7
Q ss_pred ccceEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEccc
Q 009910 89 RFNHAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGK 165 (522)
Q Consensus 89 R~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~ 165 (522)
...-+.+.. ++.+|+..-. .+.+++||+.+..-..... +..- .+++.. ++++|+..+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~-------------~~~~-~~i~~~~dG~l~v~~~- 72 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM-------------DAPV-SSVALRQSGGYVATIG- 72 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETT-----TTEEEEEETTTCCEEEEEC-------------SSCE-EEEEEBTTSSEEEEET-
T ss_pred ccccCCeEECCCCEEEEEECC-----CCEEEEEECCCCcEEEEeC-------------CCce-EEEEECCCCCEEEEEC-
Confidence 344455544 3678887643 2578999999876544332 1111 223332 556666421
Q ss_pred CCCCCCceeEEEEECCCCcEEEeeecCC-CCCCCcceEEEEECCEEEEEcccCCC------CCccCcEEEEEcCCCcEEE
Q 009910 166 TDSGSDRVSVWTFDTETECWSVVEAKGD-IPVARSGHTVVRASSVLILFGGEDGK------RRKLNDLHMFDLKSLTWLP 238 (522)
Q Consensus 166 ~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~------~~~~~~v~~yd~~t~~W~~ 238 (522)
..+++||+.+++++.+..... .+..+....++.-++++|+-. .... ......++++|+.. +...
T Consensus 73 -------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~~ 143 (297)
T 3g4e_A 73 -------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVKK 143 (297)
T ss_dssp -------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEEE
T ss_pred -------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEEE
Confidence 259999999999887764211 122222222222357777632 2111 01235688888753 3333
Q ss_pred eecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEc--CCCcEEEeeeCCCCCC-CccceEEEEE-CCEEE
Q 009910 239 LHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF--ETMIWTRIKIRGFHPS-PRAGCCGVLC-GTKWY 313 (522)
Q Consensus 239 ~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~p~-~r~~~~~~~~-~~~iy 313 (522)
+.. ....+ ...+.. +++.+|+.... .+.|++||. +++...........+. ...-.++++- ++.||
T Consensus 144 ~~~--~~~~p---ngi~~spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 144 YFD--QVDIS---NGLDWSLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp EEE--EESBE---EEEEECTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred Eee--ccccc---cceEEcCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence 321 11111 233333 34457776532 246889886 4554432111000011 1111233332 67888
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCC
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
+..-.. ..|++||+++.+.......|. .....+++...+.+.|||.-...
T Consensus 214 va~~~~-----~~v~~~d~~tG~~~~~i~~p~------~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 214 VACYNG-----GRVIRLDPVTGKRLQTVKLPV------DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEETT-----TEEEEECTTTCCEEEEEECSS------SBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEcCC-----CEEEEEcCCCceEEEEEECCC------CCceEEEEeCCCCCEEEEEcCCc
Confidence 875322 349999998776544332221 22344555433445788766543
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.53 Score=45.35 Aligned_cols=200 Identities=9% Similarity=0.013 Sum_probs=94.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++++++.|+.+ ..+.+||..+.+-...-. .....-.+++.. ++..++.|+.+. .+.
T Consensus 43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~~~dg------~i~ 99 (369)
T 3zwl_B 43 EGDLLFSCSKD-----SSASVWYSLNGERLGTLD------------GHTGTIWSIDVDCFTKYCVTGSADY------SIK 99 (369)
T ss_dssp TSCEEEEEESS-----SCEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETTT------EEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCchhhhhhh------------hcCCcEEEEEEcCCCCEEEEEeCCC------eEE
Confidence 35566666543 468889987764332211 011111222222 456666776532 588
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCc----EEEeecCC-----CCC
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCTG-----TGP 246 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~g-----~~p 246 (522)
.||+.+.+-...-. .+. .-.+++. -++..++.++.+.. .....+.+||+.+.. +....... ...
T Consensus 100 iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 100 LWDVSNGQCVATWK---SPV--PVKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEETTTCCEEEEEE---CSS--CEEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEECCCCcEEEEee---cCC--CeEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 99998877544332 111 1122222 24555665554311 123457777775432 22211000 000
Q ss_pred CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-CcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCc
Q 009910 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRH 324 (522)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~ 324 (522)
......+++...+..+++.|+.+ ..+.+||+.+ ..-...-.. ....-.+++.. ++.+++.|+.++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~---- 240 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSIDL----HEKSISDMQFSPDLTYFITSSRDT---- 240 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEEC----CSSCEEEEEECTTSSEEEEEETTS----
T ss_pred CccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEec----CCCceeEEEECCCCCEEEEecCCc----
Confidence 00012223333333356666543 3599999987 332222111 11111222222 566677776543
Q ss_pred CeEEEEECCCCceEEe
Q 009910 325 AETLIFDILKGEWSVA 340 (522)
Q Consensus 325 ~~v~~yd~~~~~W~~~ 340 (522)
.+.+||+.+.+....
T Consensus 241 -~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 241 -NSFLVDVSTLQVLKK 255 (369)
T ss_dssp -EEEEEETTTCCEEEE
T ss_pred -eEEEEECCCCceeee
Confidence 489999988765443
No 62
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.46 E-value=0.46 Score=51.36 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=74.1
Q ss_pred eEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (522)
.+-++.++.||+... .+.++.+|..+. .|+.-........ +.........+.+..+++||+....
T Consensus 71 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~v~v~~~d---- 137 (677)
T 1kb0_A 71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTG---FKGCCDVVNRGVALWKGKVYVGAWD---- 137 (677)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGG---GGSSSCSCCCCCEEETTEEEEECTT----
T ss_pred eCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcccc---ccccccCCCCCceEECCEEEEEcCC----
Confidence 345668999999865 357999999875 6877644210000 0000001122445578888886321
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEee
Q 009910 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLH 240 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 240 (522)
..++.+|..|++ |+.-.............+.++.++.+|+..+... ...-..++.||.++.+ |+.-.
T Consensus 138 ---g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 138 ---GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp ---SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred ---CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 359999999876 8764310000001122234456888877543221 1134669999998865 87653
No 63
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.44 E-value=0.7 Score=44.46 Aligned_cols=226 Identities=9% Similarity=0.044 Sum_probs=113.0
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 178 (522)
+.+++.|+.+ ..+.++|+.+.+-...-.. .. ......+..-+++.++.|+.+ ..+..|
T Consensus 92 ~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~----------~~-~~~~~~~~spdg~~l~~g~~d------g~v~i~ 149 (321)
T 3ow8_A 92 LPIAASSSLD-----AHIRLWDLENGKQIKSIDA----------GP-VDAWTLAFSPDSQYLATGTHV------GKVNIF 149 (321)
T ss_dssp SSEEEEEETT-----SEEEEEETTTTEEEEEEEC----------CT-TCCCCEEECTTSSEEEEECTT------SEEEEE
T ss_pred CCEEEEEeCC-----CcEEEEECCCCCEEEEEeC----------CC-ccEEEEEECCCCCEEEEEcCC------CcEEEE
Confidence 4466666544 4688889887654322210 00 111111122255666777653 248888
Q ss_pred ECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE
Q 009910 179 DTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (522)
Q Consensus 179 d~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (522)
|..+.+-...-. . ....-.+++. -+++.++.|+.++ .+.+||+.+.+-...- ..... .-.+++..
T Consensus 150 ~~~~~~~~~~~~---~-~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~~---~~h~~-~v~~l~~s 215 (321)
T 3ow8_A 150 GVESGKKEYSLD---T-RGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHTL---EGHAM-PIRSLTFS 215 (321)
T ss_dssp ETTTCSEEEEEE---C-SSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCSS-CCCEEEEC
T ss_pred EcCCCceeEEec---C-CCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEEE---cccCC-ceeEEEEc
Confidence 888776432211 1 1111122222 2567777777653 4889999887543321 11111 11233344
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
.+..+++.|+.++ .+.+||+.+......-. .....-.+++.. +++.++.|+.++. +.++|+.+.+
T Consensus 216 pd~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~----~h~~~v~~~~~sp~~~~l~s~s~D~~-----v~iwd~~~~~ 281 (321)
T 3ow8_A 216 PDSQLLVTASDDG-----YIKIYDVQHANLAGTLS----GHASWVLNVAFCPDDTHFVSSSSDKS-----VKVWDVGTRT 281 (321)
T ss_dssp TTSCEEEEECTTS-----CEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETTSC-----EEEEETTTTE
T ss_pred CCCCEEEEEcCCC-----eEEEEECCCcceeEEEc----CCCCceEEEEECCCCCEEEEEeCCCc-----EEEEeCCCCE
Confidence 4443777777654 48999987765432211 111111122222 5677778876654 8899998765
Q ss_pred eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 009910 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (522)
Q Consensus 337 W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~ 386 (522)
-...- .. .......+.+..+ +..++.||.++ .|.+||.
T Consensus 282 ~~~~~--~~----h~~~v~~v~~s~~--g~~l~s~~~d~----~i~vwd~ 319 (321)
T 3ow8_A 282 CVHTF--FD----HQDQVWGVKYNGN--GSKIVSVGDDQ----EIHIYDC 319 (321)
T ss_dssp EEEEE--CC----CSSCEEEEEECTT--SSEEEEEETTC----CEEEEEC
T ss_pred EEEEE--cC----CCCcEEEEEECCC--CCEEEEEeCCC----eEEEEeC
Confidence 43321 11 1112233344322 33566777643 4667663
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.44 E-value=0.83 Score=45.28 Aligned_cols=223 Identities=16% Similarity=0.130 Sum_probs=112.8
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (522)
..+.+||..+.+....... . .. ..-..+.+ ++.+++.|+.+. .+..||+.+.+....-.
T Consensus 113 ~~v~lw~~~~~~~~~~~~~----------~-~~-~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~- 173 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAET----------D-ES-TYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTMA- 173 (401)
T ss_dssp TEEEEEETTTCCEEEEEEC----------C-TT-CCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEEC-
T ss_pred CeEEEeeCCCCcEeEeeec----------C-CC-CCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEec-
Confidence 4689999988876555431 1 01 11222222 556667776532 48889998876443321
Q ss_pred CCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCC
Q 009910 192 GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (522)
Q Consensus 192 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~ 271 (522)
........+..++.+++.|+.+ ..+.+||+.+..-...... . ....-.+++...+..+++.|+.++
T Consensus 174 ----~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~s~~~d~- 239 (401)
T 4aez_A 174 ----GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQ-G--HSSEVCGLAWRSDGLQLASGGNDN- 239 (401)
T ss_dssp ----CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEE-C--CSSCEEEEEECTTSSEEEEEETTS-
T ss_pred ----CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEc-C--CCCCeeEEEEcCCCCEEEEEeCCC-
Confidence 1111222333466677777654 3488899874332111100 1 111122333333333677776543
Q ss_pred CCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCC
Q 009910 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT 349 (522)
Q Consensus 272 ~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 349 (522)
.+.+||+.+..-...-. .....-.+++.. +..+++.||.+.+ ..+.+||+.+.+-......
T Consensus 240 ----~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~------ 302 (401)
T 4aez_A 240 ----VVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDA------ 302 (401)
T ss_dssp ----CEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEEC------
T ss_pred ----eEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeC------
Confidence 58999988754332211 111112233333 4567777753221 4589999987764443211
Q ss_pred CCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 350 SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 350 ~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
......+.+... ...|++.+|... +.|.+|++.+.+.
T Consensus 303 -~~~v~~~~~s~~-~~~l~~~~g~~d---g~i~v~~~~~~~~ 339 (401)
T 4aez_A 303 -GSQVTSLIWSPH-SKEIMSTHGFPD---NNLSIWSYSSSGL 339 (401)
T ss_dssp -SSCEEEEEECSS-SSEEEEEECTTT---CEEEEEEEETTEE
T ss_pred -CCcEEEEEECCC-CCeEEEEeecCC---CcEEEEecCCccc
Confidence 112344444333 344555544322 3588888877543
No 65
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.12 Score=56.75 Aligned_cols=237 Identities=10% Similarity=0.066 Sum_probs=116.7
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-EC--CEEEEEcccCCCCCCceeE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WG--KKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~v 175 (522)
+..++.||.+ ..+.+||..+.++....... .....-.+++. .+ +.+++.|+.+. .+
T Consensus 21 g~~latg~~d-----g~I~vwd~~~~~~~~~~~l~----------~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I 79 (753)
T 3jro_A 21 GKRLATCSSD-----KTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDG------KV 79 (753)
T ss_dssp SCCEEEEETT-----TEEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCTTSCSEEEEEETTS------CE
T ss_pred CCeEEEEECC-----CcEEEEecCCCCCccceecc----------CCcCceEEEEecCCCCCCEEEEEeCCC------eE
Confidence 4556666543 46788888877776665421 11111122222 12 56777777643 38
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE-C--CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
..||..+++|..+.... .....-.+++.. + +.+++.|+.++ .+.+||+.+..-.........+. .-.
T Consensus 80 ~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~~~--~v~ 149 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAI--GVN 149 (753)
T ss_dssp EEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECCSS--CEE
T ss_pred EEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecCCC--ceE
Confidence 88898898887665411 111112222222 2 66778877543 47888887652111100001111 111
Q ss_pred EEEEEC--------------CcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCCCCCccceEEEEE-C---CEE
Q 009910 253 VAALYD--------------DKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLC-G---TKW 312 (522)
Q Consensus 253 ~~~~~~--------------~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r~~~~~~~~-~---~~i 312 (522)
+++... +. +++.|+.++ .+..||..+. .+..+.... .....-.+++.. + +++
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSY 221 (753)
T ss_dssp EEEECCCC---------CGGGC-CEEEEETTS-----CEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEE
T ss_pred EEEecCcccccccccccCCCCC-EEEEEECCC-----eEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCE
Confidence 222222 34 666676543 4788877544 444444331 111112222222 4 688
Q ss_pred EEEcccCCCCCcCeEEEEECCCCc--eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
++.||.++. +.+||+.+.. +..... . . .........+.+..+ +.+++.||.++ .|.+|++.+
T Consensus 222 l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~-~-~-~~~~~~v~~l~~spd--g~~l~s~s~Dg----~I~vwd~~~ 285 (753)
T 3jro_A 222 LASVSQDRT-----CIIWTQDNEQGPWKKTLL-K-E-EKFPDVLWRASWSLS--GNVLALSGGDN----KVTLWKENL 285 (753)
T ss_dssp EEEEESSSC-----EEEEEESSSSSCCBCCBS-S-S-SCCSSCCCCEEECTT--TCCEEEECSSS----CEECCBCCS
T ss_pred EEEEecCCE-----EEEecCCCCCCcceeEEe-c-c-CCCCCceEEEEEcCC--CCEEEEEcCCC----EEEEEecCC
Confidence 888887654 8888887642 211110 0 0 011112223334322 33566776543 478888774
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.45 Score=51.96 Aligned_cols=231 Identities=9% Similarity=0.033 Sum_probs=115.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++..+++|+.+ ..+.+||..+......-.. ..... .+++ .-++..+++|+.+ ..+.
T Consensus 24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~-----------~~~~v-~~~~~s~~~~~l~~~~~d------g~i~ 80 (814)
T 3mkq_A 24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQV-----------TETPV-RAGKFIARKNWIIVGSDD------FRIR 80 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-----------CSSCE-EEEEEEGGGTEEEEEETT------SEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEEec-----------CCCcE-EEEEEeCCCCEEEEEeCC------CeEE
Confidence 34556666533 4688999887654332210 01111 1222 2255666677653 2588
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~g~~p~~r~~~~~ 254 (522)
+||..+++....-. ... ..-.+++. -++..++.|+.+ ..+.+||+.+. .....-. . ....-.++
T Consensus 81 vw~~~~~~~~~~~~---~~~-~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~--~--~~~~v~~~ 146 (814)
T 3mkq_A 81 VFNYNTGEKVVDFE---AHP-DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE--G--HEHFVMCV 146 (814)
T ss_dssp EEETTTCCEEEEEE---CCS-SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE--C--CSSCEEEE
T ss_pred EEECCCCcEEEEEe---cCC-CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc--C--CCCcEEEE
Confidence 99998887544321 111 11122222 245566666643 34888998775 3322211 1 11112233
Q ss_pred EEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE---CCEEEEEcccCCCCCcCeEEEE
Q 009910 255 ALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 255 ~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~~~v~~y 330 (522)
+... +..+++.|+.++ .+.+||+.+..-...... .......+++.. ++.+++.|+.++ .+.+|
T Consensus 147 ~~~p~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~~~ 213 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDL-----TIKIW 213 (814)
T ss_dssp EEETTEEEEEEEEETTS-----EEEEEETTCSSCSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTTS-----EEEEE
T ss_pred EEEcCCCCEEEEEeCCC-----eEEEEECCCCcceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCCC-----EEEEE
Confidence 3333 344677776543 589999865443222221 111112222332 566777777554 48999
Q ss_pred ECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 331 d~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
|..+.+-..... . .......+.+...+ .+++.|+.++ .|.+||+.+.+
T Consensus 214 d~~~~~~~~~~~--~----~~~~v~~~~~~~~~--~~l~~~~~dg----~v~vwd~~~~~ 261 (814)
T 3mkq_A 214 DYQTKSCVATLE--G----HMSNVSFAVFHPTL--PIIISGSEDG----TLKIWNSSTYK 261 (814)
T ss_dssp ETTTTEEEEEEE--C----CSSCEEEEEECSSS--SEEEEEETTS----CEEEEETTTCS
T ss_pred ECCCCcEEEEEc--C----CCCCEEEEEEcCCC--CEEEEEeCCC----eEEEEECCCCc
Confidence 988765333221 1 11123344444333 3666776543 47888877654
No 67
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.35 E-value=0.58 Score=44.65 Aligned_cols=240 Identities=9% Similarity=0.007 Sum_probs=115.3
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcE--EEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCcee
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSW--TAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (522)
+.+|+.+... +.++++|+.+.+. ..+... ..+ .++++.. ++.|| .+... .....
T Consensus 52 ~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~-----------~~~--~~~~~~s~dg~~l~-~~~~~---~~~~~ 109 (331)
T 3u4y_A 52 SNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEG-----------QSS--MADVDITPDDQFAV-TVTGL---NHPFN 109 (331)
T ss_dssp CEEEEEESTT-----CEEEEEECSSSSCEEEEEEEC-----------SSC--CCCEEECTTSSEEE-ECCCS---SSSCE
T ss_pred CEEEEEeCCC-----CeEEEEECCCCceeEEecccC-----------CCC--ccceEECCCCCEEE-EecCC---CCccc
Confidence 4577776522 4789999988764 222221 111 1212222 44566 33221 11226
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CC-EEEEEcccCCCCCccCc-EEEEEcCCCc-EEEeecCCCCCCCCc
Q 009910 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLND-LHMFDLKSLT-WLPLHCTGTGPSPRS 250 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~-v~~yd~~t~~-W~~~~~~g~~p~~r~ 250 (522)
+++||+.+++.....+. ....+.++.. ++ .+|+.+.. .+. +.+|++.... ...... ...+....
T Consensus 110 i~v~d~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~------~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~ 177 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPI-----PYDAVGIAISPNGNGLILIDRS------SANTVRRFKIDADGVLFDTGQ-EFISGGTR 177 (331)
T ss_dssp EEEEETTTTEEEEEEEC-----CTTEEEEEECTTSSCEEEEEET------TTTEEEEEEECTTCCEEEEEE-EEECSSSS
T ss_pred EEEEECCCCCeEEEEEC-----CCCccceEECCCCCEEEEEecC------CCceEEEEEECCCCcEeecCC-ccccCCCC
Confidence 99999998876544321 1122444443 33 57776532 134 6777765432 111100 01111111
Q ss_pred ceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcE-EEeeeCCCCCCCccceEEEEE-CC-EEEEEcccCCCCCcCe
Q 009910 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAE 326 (522)
Q Consensus 251 ~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~p~~r~~~~~~~~-~~-~iyi~GG~~~~~~~~~ 326 (522)
-..++.. +++.+|+.+.. .+.+.+||+++.+. +.+... +.......++.. ++ .+|+..... +.
T Consensus 178 ~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~-----~~ 244 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNAV---GTNNLPGTIVVSRDGSTVYVLTEST-----VD 244 (331)
T ss_dssp EEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEEE---ECSSCCCCEEECTTSSEEEEECSSE-----EE
T ss_pred ccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeeec---cCCCCCceEEECCCCCEEEEEEcCC-----CE
Confidence 2333443 34457776533 24699999987765 112111 111111223332 44 477665422 34
Q ss_pred EEEEECCCCceEEeccCCCCC---CCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 327 TLIFDILKGEWSVAITSPSSS---VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 327 v~~yd~~~~~W~~~~~~p~~~---~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
++++|+.+.+.+.+...+... +..........+.. +...||+.+... +.|.+||+....
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~----~~v~v~d~~~~~ 306 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANIS----RELKVFTISGKV 306 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTT----TEEEEEETTSCE
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCC----CcEEEEEecCCc
Confidence 899999988875544322110 11111112233433 334676665532 368999987654
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.34 E-value=1 Score=45.34 Aligned_cols=234 Identities=13% Similarity=0.107 Sum_probs=115.0
Q ss_pred EEECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCcee
Q 009910 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 95 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (522)
...++.+++.|+.+ ..+.+||..+.+-...-. .....-.+++...+.+++.|+.+. .
T Consensus 128 ~~~~~~~l~sgs~d-----g~i~vwd~~~~~~~~~~~------------~h~~~V~~l~~~~~~~l~s~s~dg------~ 184 (464)
T 3v7d_B 128 LQFEDNYVITGADD-----KMIRVYDSINKKFLLQLS------------GHDGGVWALKYAHGGILVSGSTDR------T 184 (464)
T ss_dssp EEEETTEEEEEETT-----SCEEEEETTTTEEEEEEC------------CCSSCEEEEEECSTTEEEEEETTS------C
T ss_pred EEECCCEEEEEcCC-----CcEEEEECCCCcEEEEEe------------CCCcCEEEEEEcCCCEEEEEeCCC------C
Confidence 33445566666644 468899988764322111 011111223333333666776542 3
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC-C-------
Q 009910 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT-G------- 243 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-g------- 243 (522)
+..+|+.+.+-...-. .... .-.++... ++.+++.|+.++ .+.+||+.+..-...... .
T Consensus 185 i~vwd~~~~~~~~~~~---~h~~-~v~~l~~~~~~~~~~l~s~s~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFE---GHNS-TVRCLDIVEYKNIKYIVTGSRDN------TLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEETTTTEEEEEEC---CCSS-CEEEEEEEESSSCEEEEEEETTS------CEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEECCCCcEEEEEC---CCCC-ccEEEEEecCCCCCEEEEEcCCC------cEEEeeCCCCcccccccccCCcceEee
Confidence 8889998876433221 1111 11222222 457788877654 377788766542111000 0
Q ss_pred ----------CCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEE
Q 009910 244 ----------TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 312 (522)
Q Consensus 244 ----------~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i 312 (522)
..........+...++. +++.|+.++ .+.+||+.+..-...-. .....-.+++.. ++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVSGHGN-IVVSGSYDN-----TLIVWDVAQMKCLYILS----GHTDRIYSTIYDHERKR 324 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEEEETT-EEEEEETTS-----CEEEEETTTTEEEEEEC----CCSSCEEEEEEETTTTE
T ss_pred ccCCCeEEEEEccCccceEEEEcCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEec----CCCCCEEEEEEcCCCCE
Confidence 00001111122234455 566666543 59999987765432221 111112223333 5667
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
++.|+.++. +.+||+.+.+-...- .. .......+.+. + ..++.|+.++ .|.+||+.+.+
T Consensus 325 l~sg~~dg~-----i~vwd~~~~~~~~~~--~~----h~~~v~~~~~~--~--~~l~s~s~dg----~v~vwd~~~~~ 383 (464)
T 3v7d_B 325 CISASMDTT-----IRIWDLENGELMYTL--QG----HTALVGLLRLS--D--KFLVSAAADG----SIRGWDANDYS 383 (464)
T ss_dssp EEEEETTSC-----EEEEETTTTEEEEEE--CC----CSSCEEEEEEC--S--SEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEeCCCc-----EEEEECCCCcEEEEE--eC----CCCcEEEEEEc--C--CEEEEEeCCC----cEEEEECCCCc
Confidence 777776654 999999876543322 11 11122333333 2 3566666543 58888887755
No 69
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.34 E-value=0.5 Score=45.13 Aligned_cols=236 Identities=9% Similarity=-0.022 Sum_probs=116.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-C-CEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v 175 (522)
.+.+|+.+... +.+.+||+.+.+....... .. ....++.. + +.+|+.+... ..+
T Consensus 9 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~~---~~~~~~~s~dg~~l~~~~~~~------~~i 64 (331)
T 3u4y_A 9 SNFGIVVEQHL-----RRISFFSTDTLEILNQITL----------GY---DFVDTAITSDCSNVVVTSDFC------QTL 64 (331)
T ss_dssp CCEEEEEEGGG-----TEEEEEETTTCCEEEEEEC----------CC---CEEEEEECSSSCEEEEEESTT------CEE
T ss_pred CCEEEEEecCC-----CeEEEEeCcccceeeeEEc----------cC---CcceEEEcCCCCEEEEEeCCC------CeE
Confidence 46678876533 5789999998877555431 11 11222222 3 4577765532 269
Q ss_pred EEEECCCCcE-EEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 176 WTFDTETECW-SVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 176 ~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
+++|+.+++. ......+ ..+ .++++.. +..+| .+...+ ....+++||+.+.+.......+. ..+
T Consensus 65 ~~~d~~~~~~~~~~~~~~--~~~--~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~-----~~~ 131 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQEG--QSS--MADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTIPIPY-----DAV 131 (331)
T ss_dssp EEEECSSSSCEEEEEEEC--SSC--CCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEEECCT-----TEE
T ss_pred EEEECCCCceeEEecccC--CCC--ccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEEECCC-----Ccc
Confidence 9999998875 3222211 112 2213332 34566 332211 11379999999887655432111 123
Q ss_pred EEEEECC-cEEEEEcCCCCCCCCCc-EEEEEcCCCc-EEEeeeCCCCCCCccceEEEEE-CC-EEEEEcccCCCCCcCeE
Q 009910 253 VAALYDD-KNLLIFGGSSKSKTLND-LYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAET 327 (522)
Q Consensus 253 ~~~~~~~-~~lyv~GG~~~~~~~~~-v~~yd~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~-~iyi~GG~~~~~~~~~v 327 (522)
.++...+ +.+|+.+... +. +.+|++.... ....... ..+.......++.. ++ .+|+.+..+ +.+
T Consensus 132 ~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v 200 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLIG-----NSI 200 (331)
T ss_dssp EEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETTT-----TEE
T ss_pred ceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCCC-----CeE
Confidence 4444443 3467664321 34 7777765321 1111000 00111112233332 44 577766433 459
Q ss_pred EEEECCCCce-EEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 328 LIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 328 ~~yd~~~~~W-~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
.+||+.+.+. +.+...+.. .....+.+.. +...||+.... .+.|.++|+++.+.
T Consensus 201 ~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~sp-dg~~l~v~~~~----~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 201 GILETQNPENITLLNAVGTN-----NLPGTIVVSR-DGSTVYVLTES----TVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEECSSTTSCEEEEEEECS-----SCCCCEEECT-TSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred EEEECCCCcccceeeeccCC-----CCCceEEECC-CCCEEEEEEcC----CCEEEEEECCCCce
Confidence 9999988775 112111111 1112233332 33456665542 23588899887664
No 70
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.32 E-value=0.6 Score=50.22 Aligned_cols=157 Identities=10% Similarity=0.034 Sum_probs=80.2
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCCC
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPR 249 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~g~~p~~r 249 (522)
...++++|+.+++-..+.. .......-..++. -+++.++++..+.. .....++++|+.+. ....+..... ....
T Consensus 234 ~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT--GEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETD-KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCC--CSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEC-SSCC
T ss_pred eeEEEEEECCCCceEeecc--CCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccC-CCeE
Confidence 4579999999987655542 0111111112222 24554555444332 23467999999988 6666531101 0000
Q ss_pred -cceEEEEEC--CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--C-CEEEEEcccCCCCC
Q 009910 250 -SNHVAALYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G-TKWYIAGGGSRKKR 323 (522)
Q Consensus 250 -~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~-~~iyi~GG~~~~~~ 323 (522)
....++... +..+++.+..++ ...+|.+|......+.+... ... ....+.+ + +.||+.+.. ....
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~---~~~--v~~~~~~spdg~~l~~~~~~-~~~~ 380 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKG---EWE--VTNFAGFDPKGTRLYFESTE-ASPL 380 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCS---SSC--EEEEEEECTTSSEEEEEESS-SCTT
T ss_pred CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCC---CeE--EEeeeEEcCCCCEEEEEecC-CCCc
Confidence 001223333 333555554432 35789999777766666331 111 1121223 3 456665543 2222
Q ss_pred cCeEEEEECCCCceEEec
Q 009910 324 HAETLIFDILKGEWSVAI 341 (522)
Q Consensus 324 ~~~v~~yd~~~~~W~~~~ 341 (522)
...+|.+|+.+.+.+.+.
T Consensus 381 ~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 381 ERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp CBEEEEEETTCCCCEESC
T ss_pred eEEEEEEEcCCCCceecc
Confidence 357999999887766654
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.32 E-value=0.9 Score=44.46 Aligned_cols=204 Identities=8% Similarity=0.035 Sum_probs=96.7
Q ss_pred EEEEEcccCCCCCCceeEEEEECCCCc------EEEeeecCCCCC---CCcceEEEEE-----CCEE-EEEcccCCCCCc
Q 009910 158 KVLLVGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIPV---ARSGHTVVRA-----SSVL-ILFGGEDGKRRK 222 (522)
Q Consensus 158 ~iyv~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~~~~p~---~r~~~~~~~~-----~~~i-yv~GG~~~~~~~ 222 (522)
.+++.|+.+. .+.+||..+.+ +..+.. .+. ...-.+++.. ++.. ++.|+.++
T Consensus 82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---- 148 (397)
T 1sq9_A 82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---- 148 (397)
T ss_dssp EEEEEEETTS------CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETTS----
T ss_pred cEEEEEcCCC------CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCCC----
Confidence 7777777542 37778777766 666542 210 1122233333 4555 77776543
Q ss_pred cCcEEEEEcCC------Cc---EE---Eeec--CCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEE
Q 009910 223 LNDLHMFDLKS------LT---WL---PLHC--TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (522)
Q Consensus 223 ~~~v~~yd~~t------~~---W~---~~~~--~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 288 (522)
.+.+||+.+ .+ |. .+.. .........-.+++...+. +++.|+.++ .+.+||+.+..-.
T Consensus 149 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~ 220 (397)
T 1sq9_A 149 --TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-----TVQISELSTLRPL 220 (397)
T ss_dssp --CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEE
T ss_pred --cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-----cEEEEECCCCcee
Confidence 477787765 21 11 1110 0001112223345555566 677776543 5999999876543
Q ss_pred EeeeCC-CCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCC-------CCCCcEEEE
Q 009910 289 RIKIRG-FHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT-------SNKGFTLVL 358 (522)
Q Consensus 289 ~~~~~~-~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~-------~r~~~~~~~ 358 (522)
..-... ..+.......++.+ ++++++.|+.++ ....+.+||+.+.+-...-..+..... .......+.
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 322210 00000111222232 566777777541 113589999887653322211000000 112223334
Q ss_pred EeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 359 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 359 ~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+..++ .+++.|+.++ .|.+||+.+.+
T Consensus 299 ~~~~~--~~l~~~~~dg----~i~iwd~~~~~ 324 (397)
T 1sq9_A 299 FNDSG--ETLCSAGWDG----KLRFWDVKTKE 324 (397)
T ss_dssp ECSSS--SEEEEEETTS----EEEEEETTTTE
T ss_pred ECCCC--CEEEEEeCCC----eEEEEEcCCCc
Confidence 43323 3566666543 58888887664
No 72
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.32 E-value=0.56 Score=43.33 Aligned_cols=229 Identities=13% Similarity=-0.004 Sum_probs=113.7
Q ss_pred CCEEEE-EcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIV-VGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+|+ .... .+.+.+||+.+......... .. ..-++++.. ++.||+... . ..+
T Consensus 34 ~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~----------~~--~~p~~i~~~~~g~l~v~~~-~------~~i 89 (270)
T 1rwi_B 34 AGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFN----------GL--YQPQGLAVDGAGTVYVTDF-N------NRV 89 (270)
T ss_dssp TCCEEEEECSS-----SCEEEEECC-----EECCCC----------SC--CSCCCEEECTTCCEEEEET-T------TEE
T ss_pred CCCEEEEccCC-----CCcEEEecCCCcccceEeeC----------Cc--CCcceeEECCCCCEEEEcC-C------CEE
Confidence 356888 5332 25688888877654443221 00 111334443 467888754 1 248
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
++||+.+.....+.. .....-..++.. ++++|+.... ...+.+||..+......... ....+ ..+
T Consensus 90 ~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~~~~p---~~i 155 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT-GLNDP---DGV 155 (270)
T ss_dssp EEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC-SCCSC---CCE
T ss_pred EEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc-cCCCc---eeE
Confidence 999998876544431 111222344443 5678886432 24588888766654433211 11111 234
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
+...+..+|+.... .+.+.+||+.+..-...... .. ..-.+.+.. ++.+|+..... +.+.+||+.
T Consensus 156 ~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~---~~-~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~ 221 (270)
T 1rwi_B 156 AVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFT---DI-TAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAG 221 (270)
T ss_dssp EECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCS---SC-CSEEEEEECTTCCEEEEETTT-----SCEEEECTT
T ss_pred EEeCCCCEEEEECC-----CCEEEEEecCCCceEeeccc---CC-CCceEEEECCCCCEEEEECCC-----CcEEEEcCC
Confidence 44433338876432 24699999887654332211 11 111233332 45888876433 348999987
Q ss_pred CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 334 ~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+..-..... ........+++..++ .||+.... .+.|.+|++...+
T Consensus 222 ~~~~~~~~~------~~~~~p~~i~~~~~g--~l~v~~~~----~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 222 STTSTVLPF------TGLNTPLAVAVDSDR--TVYVADRG----NDRVVKLTSLEHH 266 (270)
T ss_dssp CSCCEECCC------CSCSCEEEEEECTTC--CEEEEEGG----GTEEEEECCCGGG
T ss_pred CCcceeecc------CCCCCceeEEECCCC--CEEEEECC----CCEEEEEcCCCcc
Confidence 755333221 111223344444333 47766543 2368888876554
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.26 E-value=0.81 Score=43.33 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=97.0
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++++++.|+.+ ..+.+||+.+.+-...-. .....-.++.. -++.+++.|+.+. .+.
T Consensus 76 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~s~~~d~------~i~ 132 (312)
T 4ery_A 76 DSNLLVSASDD-----KTLKIWDVSSGKCLKTLK------------GHSNYVFCCNFNPQSNLIVSGSFDE------SVR 132 (312)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEEEE------------CCSSCEEEEEECSSSSEEEEEETTS------CEE
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEEEc------------CCCCCEEEEEEcCCCCEEEEEeCCC------cEE
Confidence 45567777644 468889988765322211 00001111222 1456667777543 388
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
.||+.+.+-...- +.....-..+.+ ++.+++.|+.++ .+.+||+.+.+-...-. ....+. -..+
T Consensus 133 iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~--~~~~~~-~~~~ 198 (312)
T 4ery_A 133 IWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLI--DDDNPP-VSFV 198 (312)
T ss_dssp EEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEEC--CSSCCC-EEEE
T ss_pred EEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEe--ccCCCc-eEEE
Confidence 8999887643221 111111122222 466777777543 48899998776443321 111111 1122
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCCCcCeEEEEECC
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
+...+..+++.|+.+ +.+..||..+..-...-.. ............. .++.+++.|+.++. +.+||+.
T Consensus 199 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~-----i~vwd~~ 267 (312)
T 4ery_A 199 KFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNL-----VYIWNLQ 267 (312)
T ss_dssp EECTTSSEEEEEETT-----TEEEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSSCEEEECCTTSC-----EEEEETT
T ss_pred EECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCCcEEEEECCCCE-----EEEEECC
Confidence 233333256666544 3589999887653332211 1111111112222 25677778876654 8999998
Q ss_pred CCce
Q 009910 334 KGEW 337 (522)
Q Consensus 334 ~~~W 337 (522)
+.+-
T Consensus 268 ~~~~ 271 (312)
T 4ery_A 268 TKEI 271 (312)
T ss_dssp TCCE
T ss_pred Cchh
Confidence 7653
No 74
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.25 E-value=0.76 Score=42.87 Aligned_cols=227 Identities=7% Similarity=-0.048 Sum_probs=114.8
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.+|+.... ...+++||+. .+...... +.....-++++.. ++.+|+.... ...++
T Consensus 67 ~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~ 123 (299)
T 2z2n_A 67 DGEVWFTENA-----ANKIGRITKK-GIIKEYTL-----------PNPDSAPYGITEGPNGDIWFTEMN------GNRIG 123 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEEC-----------SSTTCCEEEEEECTTSCEEEEETT------TTEEE
T ss_pred CCCEEEeCCC-----CCeEEEECCC-CcEEEEeC-----------CCcCCCceeeEECCCCCEEEEecC------CceEE
Confidence 4678876532 2458889886 44444331 0011122344444 5788886432 12489
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (522)
+||+ +++....... .....-..++.. ++++|+..- ..+.+++||+ +.+.......... ..-..++
T Consensus 124 ~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~ 189 (299)
T 2z2n_A 124 RITD-DGKIREYELP---NKGSYPSFITLGSDNALWFTEN------QNNAIGRITE-SGDITEFKIPTPA---SGPVGIT 189 (299)
T ss_dssp EECT-TCCEEEEECS---STTCCEEEEEECTTSCEEEEET------TTTEEEEECT-TCCEEEEECSSTT---CCEEEEE
T ss_pred EECC-CCCEEEecCC---CCCCCCceEEEcCCCCEEEEeC------CCCEEEEEcC-CCcEEEeeCCCCC---CcceeEE
Confidence 9999 6666655421 111222344443 468888542 1246899999 7777665311111 1112333
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccc-eEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 009910 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~-~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
...+..+|+.... .+.+.+||+ ++....+... ..... .+++.. ++.+|+..... +.+.+||+
T Consensus 190 ~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~- 253 (299)
T 2z2n_A 190 KGNDDALWFVEII-----GNKIGRITT-SGEITEFKIP----TPNARPHAITAGAGIDLWFTEWGA-----NKIGRLTS- 253 (299)
T ss_dssp ECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECS----STTCCEEEEEECSTTCEEEEETTT-----TEEEEEET-
T ss_pred ECCCCCEEEEccC-----CceEEEECC-CCcEEEEECC----CCCCCceeEEECCCCCEEEeccCC-----ceEEEECC-
Confidence 4333337776432 246999999 7777665321 11112 223332 56788865222 35899998
Q ss_pred CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 334 ~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.+...+.. +.. ......+++ . .+.||+... .+.+.+|++++.+
T Consensus 254 ~g~~~~~~~-~~~----~~~~~~i~~-~--~g~l~v~~~-----~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 254 NNIIEEYPI-QIK----SAEPHGICF-D--GETIWFAME-----CDKIGKLTLIKDN 297 (299)
T ss_dssp TTEEEEEEC-SSS----SCCEEEEEE-C--SSCEEEEET-----TTEEEEEEEC---
T ss_pred CCceEEEeC-CCC----CCccceEEe-c--CCCEEEEec-----CCcEEEEEcCccc
Confidence 445444431 111 111222233 2 244766543 2368889887653
No 75
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.21 E-value=0.99 Score=43.77 Aligned_cols=190 Identities=10% Similarity=0.109 Sum_probs=96.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
++++++.||.+ ..+.++|..+..|....... .... ..-..+.+ ++..++.|+.+. .+
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~---------~~h~-~~v~~~~~sp~g~~l~s~s~D~------~v 85 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLS---------EGHQ-RTVRKVAWSPCGNYLASASFDA------TT 85 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEEC---------SSCS-SCEEEEEECTTSSEEEEEETTS------CE
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeec---------cccC-CcEEEEEECCCCCEEEEEECCC------cE
Confidence 45677777654 46788888888775433210 0001 11222222 566777777643 36
Q ss_pred EEEECCCCcEEEeeecCCCCCCCc-ceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCCCcce
Q 009910 176 WTFDTETECWSVVEAKGDIPVARS-GHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~g~~p~~r~~~ 252 (522)
..+|..+..+..+.. +..... -.+++.. ++++++.|+.+. .+.++|+.+. .+..+... ... ...-.
T Consensus 86 ~iw~~~~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~-~~h-~~~v~ 154 (345)
T 3fm0_A 86 CIWKKNQDDFECVTT---LEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVL-NSH-TQDVK 154 (345)
T ss_dssp EEEEECCC-EEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEE-CCC-CSCEE
T ss_pred EEEEccCCCeEEEEE---ccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEe-cCc-CCCeE
Confidence 677777776655442 111111 1222222 467777777654 3788888664 33333211 101 11111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEE
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~y 330 (522)
+++...+..+++.|+.++ .+..||..+..|..+..... .......+.+ +++.++.|+.++. +.++
T Consensus 155 ~~~~~p~~~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~---h~~~v~~l~~sp~g~~l~s~s~D~~-----v~iW 221 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDD-----TVKLYREEEDDWVCCATLEG---HESTVWSLAFDPSGQRLASCSDDRT-----VRIW 221 (345)
T ss_dssp EEEECSSSSCEEEEETTS-----CEEEEEEETTEEEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSC-----EEEE
T ss_pred EEEECCCCCEEEEEeCCC-----cEEEEEecCCCEEEEEEecC---CCCceEEEEECCCCCEEEEEeCCCe-----EEEe
Confidence 223333333677776554 48889988888876554311 1111222222 5677777776654 5555
Q ss_pred EC
Q 009910 331 DI 332 (522)
Q Consensus 331 d~ 332 (522)
|.
T Consensus 222 ~~ 223 (345)
T 3fm0_A 222 RQ 223 (345)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 76
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.25 Score=48.76 Aligned_cols=145 Identities=10% Similarity=0.052 Sum_probs=74.8
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
+..++.|+.+ ..+..||..+.+-...-. .... .-.+++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 217 ~~~~~~~~~~------g~i~~~d~~~~~~~~~~~---~~~~-~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~ 280 (425)
T 1r5m_A 217 DDKFVIPGPK------GAIFVYQITEKTPTGKLI---GHHG-PISVLEFNDTNKLLLSASDDG------TLRIWHGGNGN 280 (425)
T ss_dssp TTEEEEECGG------GCEEEEETTCSSCSEEEC---CCSS-CEEEEEEETTTTEEEEEETTS------CEEEECSSSBS
T ss_pred CCEEEEEcCC------CeEEEEEcCCCceeeeec---cCCC-ceEEEEECCCCCEEEEEcCCC------EEEEEECCCCc
Confidence 3345566543 248899998764322211 1111 11223332 456677776443 47888887654
Q ss_pred EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEE
Q 009910 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 314 (522)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi 314 (522)
-...- . .....-.+++...+. +++.|+.+ ..+.+||+.+..-...... ....-.+++.. ++++++
T Consensus 281 ~~~~~---~-~~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 281 SQNCF---Y-GHSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp CSEEE---C-CCSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEE
T ss_pred cceEe---c-CCCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEE
Confidence 32221 1 111222344555566 66666654 3689999877653332221 11111222222 567777
Q ss_pred EcccCCCCCcCeEEEEECCCCc
Q 009910 315 AGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 315 ~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
.|+.++ .+.+||+.+..
T Consensus 347 ~~~~dg-----~i~i~~~~~~~ 363 (425)
T 1r5m_A 347 VAFMDG-----QVNVYDLKKLN 363 (425)
T ss_dssp EEETTS-----CEEEEECHHHH
T ss_pred EEECCC-----eEEEEECCCCc
Confidence 777654 38889887654
No 77
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.18 E-value=0.56 Score=44.93 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=76.7
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+|+.++.. +.++++|+.+.+....-.. +. ...-+.++.. ++.+|+.+... ..+
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~~-~~~~~~~~~s~dg~~~~v~~~~~------~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVM----------PD-KFGPGTAMMAPDNRTAYVLNNHY------GDI 67 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEEC----------SS-CCSSCEEEECTTSSEEEEEETTT------TEE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEec----------CC-CCCCceeEECCCCCEEEEEeCCC------CcE
Confidence 56778777543 5789999988765433221 11 0011223322 34677775422 359
Q ss_pred EEEECCCCcEEEeeecCCCCC--CCcceEEEEE-CC-EEEEEcccC---CCCC---ccCcEEEEEcCCCcEEEeecCCCC
Q 009910 176 WTFDTETECWSVVEAKGDIPV--ARSGHTVVRA-SS-VLILFGGED---GKRR---KLNDLHMFDLKSLTWLPLHCTGTG 245 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~--~r~~~~~~~~-~~-~iyv~GG~~---~~~~---~~~~v~~yd~~t~~W~~~~~~g~~ 245 (522)
++||+.+++-...-..+..+. ...-+.++.. ++ .+|+.+ .+ .... ..+.+++||+.+.+-..... ..
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~ 144 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV-NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--TF 144 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE-EEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--EE
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEc-ccccccccccccCCCeEEEEECCCccccceee--ec
Confidence 999999887543322111110 1112233332 34 455543 21 0000 12579999998743211100 11
Q ss_pred CCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE
Q 009910 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (522)
Q Consensus 246 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (522)
+.++.-.+++...+..+|+.++ +++++|+.+.+-..
T Consensus 145 ~~~~~~~~~~~s~dg~l~~~~~--------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 145 PMPRQVYLMRAADDGSLYVAGP--------DIYKMDVKTGKYTV 180 (349)
T ss_dssp ECCSSCCCEEECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred cCCCcccceeECCCCcEEEccC--------cEEEEeCCCCceec
Confidence 1122223333433333777432 38889987766443
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.18 E-value=0.28 Score=48.29 Aligned_cols=115 Identities=14% Similarity=0.045 Sum_probs=56.8
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCC--C--CCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEE
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG--P--SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLD 281 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~--p--~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd 281 (522)
++ +++.|+.+ ..+.+||+.+.+-...-. .. . ....-.+++.. ++. +++.|+.+. ....+.+||
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~--~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~--~~g~i~i~d 264 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFE--SQHSMINNSNSIRSVKFSPQGS-LLAIAHDSN--SFGCITLYE 264 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEE--CCC---CCCCCEEEEEECSSTT-EEEEEEEET--TEEEEEEEE
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEe--ccccccccCCccceEEECCCCC-EEEEEecCC--CCceEEEEE
Confidence 45 66776643 348899998765433221 10 0 01112233333 345 666665431 013689999
Q ss_pred cCCCcEEEeeeCCCCCC--------CccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceE
Q 009910 282 FETMIWTRIKIRGFHPS--------PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (522)
Q Consensus 282 ~~~~~W~~~~~~~~~p~--------~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~ 338 (522)
+.+..-...-.....+. .......+.+ ++++++.|+.++ .+.+||+.+.+-.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-----KLRFWDVKTKERI 326 (397)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEE
T ss_pred CCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCcee
Confidence 87654322211100000 1112222233 566777777554 4899999876543
No 79
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.17 E-value=1.2 Score=48.16 Aligned_cols=215 Identities=8% Similarity=-0.003 Sum_probs=108.7
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCC-------
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSG------- 169 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~------- 169 (522)
+++.++++..........++++|+.+.+........ . ....++.. +++.++++......
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~------------~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER------------V-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE------------E-CSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC------------c-ccceEEEEeCCCEEEEEEECCccccccccc
Confidence 455555443222222247999999998876643210 0 11112222 44433343332210
Q ss_pred ---CCceeEEEEECCCCcEE--EeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCC------C--c
Q 009910 170 ---SDRVSVWTFDTETECWS--VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS------L--T 235 (522)
Q Consensus 170 ---~~~~~v~~yd~~t~~W~--~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t------~--~ 235 (522)
.....++++++.+.+.+ .+.. ....+........ -+++.+++...... ...++++++|+.+ . .
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGC-DPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSS-SSCCEEEEEEGGGSSSSSCSSCC
T ss_pred cccCCCCEEEEEECCCCcccceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccC-CCccEEEEEECcccccccCCccc
Confidence 12346999999887632 2221 1111222222222 24544444433221 1246899999976 4 5
Q ss_pred EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC---cEEEeeeCCCCCCCccceEEEEE-CCE
Q 009910 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHPSPRAGCCGVLC-GTK 311 (522)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~p~~r~~~~~~~~-~~~ 311 (522)
+..+.. .... .......+++.||+.+..+. ....++.+|+.+. .|+.+... .....-...+.. +++
T Consensus 279 ~~~l~~---~~~~--~~~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 279 WVKLID---NFEG--EYDYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPE---HEKDVLEWVACVRSNF 348 (710)
T ss_dssp CEEEEC---SSSS--CEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECC---CSSCEEEEEEEETTTE
T ss_pred eEEeeC---CCCc--EEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccCC---CCCCeEEEEEEEcCCE
Confidence 877752 1111 12233445565777765432 2457999999775 58888653 111122233444 678
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCc-eEEec
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGE-WSVAI 341 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 341 (522)
+++....++ ...++++|+.+++ ...+.
T Consensus 349 lv~~~~~~g---~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 349 LVLCYLHDV---KNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp EEEEEEETT---EEEEEEEETTTCCEEEEEC
T ss_pred EEEEEEECC---EEEEEEEECCCCCEEEecC
Confidence 877765443 2568999985554 34443
No 80
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.15 E-value=1.2 Score=48.05 Aligned_cols=124 Identities=13% Similarity=0.065 Sum_probs=68.8
Q ss_pred EEEECCEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecCC--CCC---CCcceEEEEECCEEEEEcccCCCCCccC
Q 009910 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGD--IPV---ARSGHTVVRASSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~--~p~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 224 (522)
-++.++.||+.... ..++.+|..|++ |+.-..... .+. .....+.++.+++||+... -.
T Consensus 73 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg 138 (677)
T 1kb0_A 73 PVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DG 138 (677)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CC
Confidence 34579999998652 349999999876 876432100 000 0112345567888888531 24
Q ss_pred cEEEEEcCCCc--EEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEee
Q 009910 225 DLHMFDLKSLT--WLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 291 (522)
Q Consensus 225 ~v~~yd~~t~~--W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 291 (522)
.++.+|.++.+ |+.-... ..+. .....+.++.++. +|+..+.........++.||.++++ |+.-.
T Consensus 139 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEECCE-EEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 59999998765 8765310 1111 1111223344554 6553322112234579999998764 77644
No 81
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.12 E-value=0.19 Score=50.61 Aligned_cols=186 Identities=10% Similarity=0.008 Sum_probs=100.1
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CC-EEEEEcccCCCCCCceeEEEEECCCCcEEEeee
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 190 (522)
..++++|+.+.+...+... +. ....+.+ ++ .|++.+..+. ...++.+|+.+.+...+..
T Consensus 203 ~~i~~~d~~tg~~~~l~~~------------~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~ 264 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASF------------PR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD 264 (415)
T ss_dssp CEEEEEETTTCCEEEEECC------------SS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCC
T ss_pred cEEEEEECCCCcEEEeecC------------CC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcC
Confidence 4789999988876655431 11 1122222 34 4554544321 2469999999988765542
Q ss_pred cCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCC
Q 009910 191 KGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (522)
Q Consensus 191 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~ 268 (522)
.+ ......+. -+++.+++++.... ...++++|+.+.+-..+.. ........+.. +++ .+++++.
T Consensus 265 ---~~--~~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~-~l~~~~~ 330 (415)
T 2hqs_A 265 ---GR--SNNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGK-FMVMVSS 330 (415)
T ss_dssp ---CS--SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSS-EEEEEEE
T ss_pred ---CC--CcccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCC-EEEEEEC
Confidence 11 11122222 24555555443221 2469999998877555431 11222223333 455 4445443
Q ss_pred CCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEec
Q 009910 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 269 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
... ...++++|+++.....+... . ...+.+.. +++.+++++.... ...++++|+.+.....+.
T Consensus 331 ~~g--~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 331 NGG--QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp CSS--CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECC
T ss_pred cCC--ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEee
Confidence 221 34799999999887665432 1 12222222 5666666654332 246999999887776655
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.09 E-value=0.89 Score=49.61 Aligned_cols=190 Identities=15% Similarity=0.091 Sum_probs=95.5
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++..++.|+.+ ..+.+||..+.+....-.. ... .-.+++.. ++..++.|+.+ ..+.
T Consensus 66 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~-----------~~~-~v~~~~~s~~~~~l~~~~~d------g~i~ 122 (814)
T 3mkq_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEA-----------HPD-YIRSIAVHPTKPYVLSGSDD------LTVK 122 (814)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEEEEC-----------CSS-CEEEEEECSSSSEEEEEETT------SEEE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEec-----------CCC-CEEEEEEeCCCCEEEEEcCC------CEEE
Confidence 45566666643 4688999888765433220 011 11122222 45555566643 2488
Q ss_pred EEECCCC-cEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceE
Q 009910 177 TFDTETE-CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 177 ~yd~~t~-~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (522)
.||..++ .....-. .....-.+++.. ++.+++.|+.++ .+.+||+.+.+-.... ..........
T Consensus 123 vw~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~---~~~~~~~v~~ 189 (814)
T 3mkq_A 123 LWNWENNWALEQTFE----GHEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTL---TTGQERGVNY 189 (814)
T ss_dssp EEEGGGTSEEEEEEE----CCSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEE---ECCCTTCCCE
T ss_pred EEECCCCceEEEEEc----CCCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEE---ecCCCCCEEE
Confidence 8888776 3322221 111112233333 456777776543 4888998664422221 1111111223
Q ss_pred EEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEE
Q 009910 254 AALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 254 ~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~ 329 (522)
++.. ++. +++.|+.++ .+..||..+..-...-.. .. ..-.+++.. ++.+++.|+.++. +.+
T Consensus 190 ~~~~~~~~~~-~l~~~~~dg-----~i~~~d~~~~~~~~~~~~---~~-~~v~~~~~~~~~~~l~~~~~dg~-----v~v 254 (814)
T 3mkq_A 190 VDYYPLPDKP-YMITASDDL-----TIKIWDYQTKSCVATLEG---HM-SNVSFAVFHPTLPIIISGSEDGT-----LKI 254 (814)
T ss_dssp EEECCSTTCC-EEEEECTTS-----EEEEEETTTTEEEEEEEC---CS-SCEEEEEECSSSSEEEEEETTSC-----EEE
T ss_pred EEEEECCCCC-EEEEEeCCC-----EEEEEECCCCcEEEEEcC---CC-CCEEEEEEcCCCCEEEEEeCCCe-----EEE
Confidence 3333 445 677776543 589999877653322111 11 111122222 5667777776544 888
Q ss_pred EECCCCceE
Q 009910 330 FDILKGEWS 338 (522)
Q Consensus 330 yd~~~~~W~ 338 (522)
||+.+.+-.
T Consensus 255 wd~~~~~~~ 263 (814)
T 3mkq_A 255 WNSSTYKVE 263 (814)
T ss_dssp EETTTCSEE
T ss_pred EECCCCcEE
Confidence 998775543
No 83
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=96.09 E-value=0.37 Score=52.17 Aligned_cols=110 Identities=9% Similarity=-0.046 Sum_probs=56.2
Q ss_pred cEEEEEcCC-CcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCC-CCccc
Q 009910 225 DLHMFDLKS-LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-SPRAG 302 (522)
Q Consensus 225 ~v~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p-~~r~~ 302 (522)
.++++|+.+ .+-..+... .+.......++.-+++.| +++..+......+++++|+.+.....+....... .....
T Consensus 264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHL-SFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEE-EEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEE-EEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788899988 765555311 011111122222455534 4433222223457999999998877665421100 00011
Q ss_pred eEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEec
Q 009910 303 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 303 ~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
..+..-++++++.+..++ ...+|.+|.... ...+.
T Consensus 341 ~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESC
T ss_pred ceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeee
Confidence 112222667666665433 367899997766 55544
No 84
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.07 E-value=0.41 Score=46.01 Aligned_cols=207 Identities=9% Similarity=0.017 Sum_probs=104.8
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.||+.+... ..+++||+.+.+...+... . ...-++++.. ++++|+...... .....++
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~-----------~-~~~~~~i~~~~dg~l~v~~~~~~--~~~~~i~ 115 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVS-----------H-KANPAAIKIHKDGRLFVCYLGDF--KSTGGIF 115 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEEC-----------S-SSSEEEEEECTTSCEEEEECTTS--SSCCEEE
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC-----------C-CCCcceEEECCCCcEEEEeCCCC--CCCceEE
Confidence 46688876532 4789999998887665421 0 1112334333 567887653321 1124699
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (522)
+||+.+.....+.. .......-..++.. ++++|+.............++++|+++.+...+.. ... .....+
T Consensus 116 ~~d~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~~~~i~ 188 (333)
T 2dg1_A 116 AATENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS---VANGIA 188 (333)
T ss_dssp EECTTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES---SEEEEE
T ss_pred EEeCCCCEEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC---cccceE
Confidence 99999887653321 11111222233332 56788754321111224579999998777665531 111 112333
Q ss_pred EEC-CcEEEEEcCCCCCCCCCcEEEEEcCC--CcEEEeeeC--CCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEE
Q 009910 256 LYD-DKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 256 ~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~--~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~ 329 (522)
... ++.+|+.... .+.+++||+.+ .....+... ...+....-.+++.. ++.+|+..... +.|.+
T Consensus 189 ~~~dg~~l~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-----~~v~~ 258 (333)
T 2dg1_A 189 LSTDEKVLWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLV 258 (333)
T ss_dssp ECTTSSEEEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEE
T ss_pred ECCCCCEEEEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC-----CEEEE
Confidence 333 3457775422 24689999853 233322110 000111111222222 56788765322 35899
Q ss_pred EECCCCceEEe
Q 009910 330 FDILKGEWSVA 340 (522)
Q Consensus 330 yd~~~~~W~~~ 340 (522)
||++...-..+
T Consensus 259 ~d~~g~~~~~~ 269 (333)
T 2dg1_A 259 FNKRGYPIGQI 269 (333)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCCEEEEE
Confidence 99965544443
No 85
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=0.45 Score=52.24 Aligned_cols=227 Identities=7% Similarity=-0.043 Sum_probs=118.1
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
..+++||+.+.++...... ...+...-.+++.. ++.|++ |... .-+++||+.+++++.....
T Consensus 383 ~Gl~~~~~~~~~~~~~~~~---------~~~~~~~v~~i~~d~~g~lWi-gt~~------~Gl~~~~~~~~~~~~~~~~- 445 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNKEN---------RELLSNSVLCSLKDSEGNLWF-GTYL------GNISYYNTRLKKFQIIELE- 445 (781)
T ss_dssp SCEEEEETTEEEEECC--------------CCCSBEEEEEECTTSCEEE-EETT------EEEEEECSSSCEEEECCST-
T ss_pred CcEEEEECCCCeEEEccCC---------CCCCCcceEEEEECCCCCEEE-Eecc------CCEEEEcCCCCcEEEeccC-
Confidence 3478899887766554210 01122223444444 567777 3321 2489999999998877531
Q ss_pred CCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCCC
Q 009910 193 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSK 270 (522)
Q Consensus 193 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~ 270 (522)
.++. ..-.+++.. ++.|++-. . ..+++||+.+.+|+........+. ...-.+.+.-.+..|++. ...
T Consensus 446 ~~~~-~~v~~i~~d~~g~lwigt-~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~- 514 (781)
T 3v9f_A 446 KNEL-LDVRVFYEDKNKKIWIGT-H-------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFG- 514 (781)
T ss_dssp TTCC-CCEEEEEECTTSEEEEEE-T-------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESS-
T ss_pred CCCC-CeEEEEEECCCCCEEEEE-C-------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcC-
Confidence 1111 122233333 46777742 1 458999999998887752211111 111122223333336653 221
Q ss_pred CCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCCCcCeE-EEEECCCCceEEeccCCCCCC
Q 009910 271 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAET-LIFDILKGEWSVAITSPSSSV 348 (522)
Q Consensus 271 ~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~v-~~yd~~~~~W~~~~~~p~~~~ 348 (522)
+.+++||+++++++.......+|.... .+.+. -++.|++... . -+ ++||+.+.+++....... .+
T Consensus 515 ----~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~------Glv~~~d~~~~~~~~~~~~~g-l~ 581 (781)
T 3v9f_A 515 ----GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E------GLVCFPSARNFDYQVFQRKEG-LP 581 (781)
T ss_dssp ----SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T------EEEEESCTTTCCCEEECGGGT-CS
T ss_pred ----CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C------CceEEECCCCCcEEEccccCC-CC
Confidence 248999999999888764222222111 12222 2567777532 1 26 899999988887653211 11
Q ss_pred CCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 349 ~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
. . ....++.. ..+.|++.+. . .+.+|++++.+.
T Consensus 582 ~-~-~i~~i~~d--~~g~lW~~t~-~-----Gl~~~~~~~~~~ 614 (781)
T 3v9f_A 582 N-T-HIRAISED--KNGNIWASTN-T-----GISCYITSKKCF 614 (781)
T ss_dssp C-C-CCCEEEEC--SSSCEEEECS-S-----CEEEEETTTTEE
T ss_pred C-c-eEEEEEEC--CCCCEEEEcC-C-----ceEEEECCCCce
Confidence 1 1 12233333 2345665542 2 477788776553
No 86
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.06 E-value=0.63 Score=46.12 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=97.3
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.+++.|+.+. .+..||+.+.+-...-. .....-.+++.. ++.+++.|+.+. .+.+||+.+.
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~d~------~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNFNLQREIDQ----AHVSEITKLKFFPSGEALISSSQDM------QLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTSCEEEEETT----SSSSCEEEEEECTTSSEEEEEETTS------EEEEEETTTC
T ss_pred CCCEEEEEECCC------CEEEEeCCCcceeeecc----cccCccEEEEECCCCCEEEEEeCCC------eEEEEeCCCC
Confidence 567777777542 48889988765433310 111122233332 466777776543 4889998765
Q ss_pred cEE-EeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceE-EEE-----
Q 009910 235 TWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC-GVL----- 307 (522)
Q Consensus 235 ~W~-~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~-~~~----- 307 (522)
+-. .+. . ....-.+++...+..+++.|+.++ .+.+||+.+..-...-... ..+..... .+.
T Consensus 172 ~~~~~~~---~--h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 239 (420)
T 3vl1_A 172 SNPRTLI---G--HRATVTDIAIIDRGRNVLSASLDG-----TIRLWECGTGTTIHTFNRK--ENPHDGVNSIALFVGTD 239 (420)
T ss_dssp CCCEEEE---C--CSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEEEEECBT--TBTTCCEEEEEEEECCC
T ss_pred cCceEEc---C--CCCcEEEEEEcCCCCEEEEEcCCC-----cEEEeECCCCceeEEeecC--CCCCCCccEEEEecCCc
Confidence 422 121 1 111122333343333666676543 4889998876533322211 11111111 111
Q ss_pred -----------------ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEE
Q 009910 308 -----------------CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (522)
Q Consensus 308 -----------------~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~ 370 (522)
-++++++.|+.++. +.+||+.+.+-.... .. ........+.+...+ ..+++.
T Consensus 240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~--~~---~~~~~v~~~~~~~~~-~~~l~~ 308 (420)
T 3vl1_A 240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-----ITVHNVFSKEQTIQL--PS---KFTCSCNSLTVDGNN-ANYIYA 308 (420)
T ss_dssp SSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-----EEEEETTTCCEEEEE--CC---TTSSCEEEEEECSSC-TTEEEE
T ss_pred ceeeecccCcccceEEcCCCCEEEEEcCCCe-----EEEEECCCCceeEEc--cc---ccCCCceeEEEeCCC-CCEEEE
Confidence 15677788776554 899999876533222 11 111123334443222 225666
Q ss_pred cCCCCCCCCcEEEEEcccCC
Q 009910 371 GGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 371 GG~~~~~~~~v~~y~~~~~~ 390 (522)
|+.++ .|.+||+.+.+
T Consensus 309 g~~dg----~i~vwd~~~~~ 324 (420)
T 3vl1_A 309 GYENG----MLAQWDLRSPE 324 (420)
T ss_dssp EETTS----EEEEEETTCTT
T ss_pred EeCCC----eEEEEEcCCCc
Confidence 76543 68899988764
No 87
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.05 E-value=0.6 Score=45.61 Aligned_cols=189 Identities=11% Similarity=0.036 Sum_probs=92.7
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
+++.++.|+.+. .+.++|+.+++-...-. -.... -.+++.. +..+++.|+.+. .+.+||+.+
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~~---~h~~~-V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~ 201 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSYR---AHAAQ-VTCVAASPHKDSVFLSCSEDN------RILLWDTRC 201 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSSC-EEEEEECSSCTTEEEEEETTS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---CcCCc-eEEEEecCCCCCceeeecccc------ccccccccc
Confidence 567777777643 38889998876432211 11111 1122221 235777777654 378899987
Q ss_pred CcEEEeecCCCCCCCCcceEEEE-E-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-C-
Q 009910 234 LTWLPLHCTGTGPSPRSNHVAAL-Y-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G- 309 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~-~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~- 309 (522)
.+-...- ..........++. . .+..+++.|+.++ .|.+||+.+.+- +.... .....-.+++.. +
T Consensus 202 ~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~--~~~~~--~h~~~v~~v~fsp~g 269 (344)
T 4gqb_B 202 PKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSC--VLSSA--VHSQCVTGLVFSPHS 269 (344)
T ss_dssp SSCEEEC---C----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--C--CEEEE--CCSSCEEEEEECSSS
T ss_pred cceeeee---ecceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcE--EEEEc--CCCCCEEEEEEccCC
Confidence 6543321 1111111122222 2 2333777776543 588899876532 11110 011111222222 3
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 310 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 310 ~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
.++++.|+.++. |.+||..+.+-..+.. . ......+.+.. +...+++.||.++ .|.++++.+.
T Consensus 270 ~~~lasgs~D~~-----i~vwd~~~~~~~~~~~------H-~~~V~~v~~sp-~~~~llas~s~D~----~v~~w~v~~~ 332 (344)
T 4gqb_B 270 VPFLASLSEDCS-----LAVLDSSLSELFRSQA------H-RDFVRDATWSP-LNHSLLTTVGWDH----QVVHHVVPTE 332 (344)
T ss_dssp SCCEEEEETTSC-----EEEECTTCCEEEEECC------C-SSCEEEEEECS-SSTTEEEEEETTS----CEEEEECCC-
T ss_pred CeEEEEEeCCCe-----EEEEECCCCcEEEEcC------C-CCCEEEEEEeC-CCCeEEEEEcCCC----eEEEEECCCC
Confidence 356677776654 8899988776433221 1 11123333332 2344777788654 4777776554
No 88
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.03 E-value=1.2 Score=43.01 Aligned_cols=223 Identities=12% Similarity=-0.026 Sum_probs=107.4
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 178 (522)
+.+|+++... ..+++||+.+.+...... +......+..-++++|+... ..+++|
T Consensus 61 ~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~-------------~~~v~~i~~~~dg~l~v~~~--------~gl~~~ 114 (326)
T 2ghs_A 61 GTAWWFNILE-----RELHELHLASGRKTVHAL-------------PFMGSALAKISDSKQLIASD--------DGLFLR 114 (326)
T ss_dssp TEEEEEEGGG-----TEEEEEETTTTEEEEEEC-------------SSCEEEEEEEETTEEEEEET--------TEEEEE
T ss_pred CEEEEEECCC-----CEEEEEECCCCcEEEEEC-------------CCcceEEEEeCCCeEEEEEC--------CCEEEE
Confidence 6788876432 478999998876554432 11111222234678877531 139999
Q ss_pred ECCCCcEEEeeecC-CCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE
Q 009910 179 DTETECWSVVEAKG-DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (522)
Q Consensus 179 d~~t~~W~~~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (522)
|+.+++.+.+.... ..+..+....++.-++++|+.............+++|| +.+...+.. ... .....+..
T Consensus 115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~---~~~~i~~s 187 (326)
T 2ghs_A 115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DIS---IPNSICFS 187 (326)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EES---SEEEEEEC
T ss_pred ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCc---ccCCeEEc
Confidence 99999987765311 11111222222222567776321111112345789998 466555431 111 11123333
Q ss_pred -CCcEEEEEcCCCCCCCCCcEEEEEcC--CC-cEE---EeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEE
Q 009910 258 -DDKNLLIFGGSSKSKTLNDLYSLDFE--TM-IWT---RIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 258 -~~~~lyv~GG~~~~~~~~~v~~yd~~--~~-~W~---~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~ 329 (522)
+++.+|+.... .+.|++||.. ++ ... .+.... .....-.+++.- ++.+|+..-.. +.|.+
T Consensus 188 ~dg~~lyv~~~~-----~~~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~-----~~v~~ 255 (326)
T 2ghs_A 188 PDGTTGYFVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGE-----GAVDR 255 (326)
T ss_dssp TTSCEEEEEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETT-----TEEEE
T ss_pred CCCCEEEEEECC-----CCEEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCCEEEEEeCC-----CEEEE
Confidence 34457776432 2479999975 44 211 111110 001111222222 56787764211 35899
Q ss_pred EECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCC
Q 009910 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (522)
Q Consensus 330 yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~ 373 (522)
||+....-..+. .+. .....+++...+.+.||+....
T Consensus 256 ~d~~g~~~~~i~-~~~------~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDTDGNHIARYE-VPG------KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECTTCCEEEEEE-CSC------SBEEEEEEESTTSCEEEEEEBC
T ss_pred ECCCCCEEEEEE-CCC------CCcEEEEEecCCCCEEEEEecC
Confidence 999654433333 121 1233444432233457665444
No 89
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.01 E-value=0.42 Score=52.56 Aligned_cols=225 Identities=10% Similarity=0.044 Sum_probs=117.8
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC-
Q 009910 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG- 192 (522)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~- 192 (522)
.+++||+.+.++....... ...+...-.+++.. ++.|++-.. . -+++||+.+++|+......
T Consensus 428 Gl~~~d~~~~~~~~~~~~~--------~~l~~~~v~~i~~d~~g~lwigt~-~-------Gl~~~~~~~~~~~~~~~~~~ 491 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRN--------SQLVNENVYAILPDGEGNLWLGTL-S-------ALVRFNPEQRSFTTIEKEKD 491 (795)
T ss_dssp EEEEEETTTCCEEEECTTT--------SCCSCSCEEEEEECSSSCEEEEES-S-------CEEEEETTTTEEEECCBCTT
T ss_pred ceeEEeCCCCcEEEeecCC--------CCcCCCeeEEEEECCCCCEEEEec-C-------ceeEEeCCCCeEEEcccccc
Confidence 4677777777666654310 01111122333333 466776432 2 2899999999998775320
Q ss_pred --CCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC---CCCCCCCcceEEEEECCcEEEEEc
Q 009910 193 --DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDKNLLIFG 266 (522)
Q Consensus 193 --~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~~lyv~G 266 (522)
.++.... .++.. -++.|++-.. ..+++||+.+.++ ..... ..++.. .-.+.+.-.+..|++..
T Consensus 492 ~~~~~~~~i-~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 492 GTPVVSKQI-TTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGT 560 (795)
T ss_dssp CCBCCCCCE-EEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEE
T ss_pred ccccCCceE-EEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEe
Confidence 1111111 22222 2467777431 3489999999888 44310 011111 11122222333366532
Q ss_pred CCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCC
Q 009910 267 GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 345 (522)
Q Consensus 267 G~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 345 (522)
. +.+++||+++++++.......+|... ..+++.. ++.|++.+. .-+.+||+.+.+++.......
T Consensus 561 -~------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dG 625 (795)
T 4a2l_A 561 -R------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDG 625 (795)
T ss_dssp -S------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGT
T ss_pred -C------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCC
Confidence 1 24899999999988875432233322 2233232 567877653 238899999999887654222
Q ss_pred CCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 346 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 346 ~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+.......++.... .+.| .|||.. .+..|+|+...
T Consensus 626 -l~~~~f~~~~~~~~~--~G~l-~~g~~~-----Gl~~~~p~~~~ 661 (795)
T 4a2l_A 626 -LQSNQFNTASYCRTS--VGQM-YFGGIN-----GITTFRPELLL 661 (795)
T ss_dssp -CSCSCEEEEEEEECT--TSCE-EEEETT-----EEEEECGGGCC
T ss_pred -CccccCccCceeECC--CCeE-EEecCC-----ceEEEcHHHcc
Confidence 111111113333332 2334 467765 48888887654
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.95 E-value=0.91 Score=44.39 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=74.2
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCceeEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
+.+++.|+.+ ..+.++|+.+.....+... ......-.+++. -++.+++.|+.+ ..+..
T Consensus 131 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i 189 (383)
T 3ei3_B 131 TNQLFVSSIR-----GATTLRDFSGSVIQVFAKT----------DSWDYWYCCVDVSVSRQMLATGDST------GRLLL 189 (383)
T ss_dssp EEEEEEEETT-----TEEEEEETTSCEEEEEECC----------CCSSCCEEEEEEETTTTEEEEEETT------SEEEE
T ss_pred CCEEEEEeCC-----CEEEEEECCCCceEEEecc----------CCCCCCeEEEEECCCCCEEEEECCC------CCEEE
Confidence 3566666544 4688999987666555431 100111122222 245666777654 25889
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEE-CCE-EEEEcccCCCCCccCcEEEEEcCC----CcEEEeecCCCCCCCCcc
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSV-LILFGGEDGKRRKLNDLHMFDLKS----LTWLPLHCTGTGPSPRSN 251 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~g~~p~~r~~ 251 (522)
||+....-..+.. .. ..-.+++.. ++. +++.|+.+. .+.+||+.+ ....... .....-
T Consensus 190 ~d~~~~~~~~~~~----h~-~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~-----~~~~~v 253 (383)
T 3ei3_B 190 LGLDGHEIFKEKL----HK-AKVTHAEFNPRCDWLMATSSVDA------TVKLWDLRNIKDKNSYIAEM-----PHEKPV 253 (383)
T ss_dssp EETTSCEEEEEEC----SS-SCEEEEEECSSCTTEEEEEETTS------EEEEEEGGGCCSTTCEEEEE-----ECSSCE
T ss_pred EECCCCEEEEecc----CC-CcEEEEEECCCCCCEEEEEeCCC------EEEEEeCCCCCcccceEEEe-----cCCCce
Confidence 9986554444331 11 111223232 344 777776543 488899876 3333221 111122
Q ss_pred eEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 252 HVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 252 ~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
.+++... +..+++.|+.+ +.+.+||+.+.
T Consensus 254 ~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~ 283 (383)
T 3ei3_B 254 NAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDW 283 (383)
T ss_dssp EEEEECTTTSCEEEEEESS-----SEEEEEETTBT
T ss_pred EEEEEcCCCCCEEEEEcCC-----CcEEEEECCCC
Confidence 2333333 33366666654 35888988654
No 91
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.94 E-value=1.3 Score=42.79 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=71.3
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
.+..||+.+.+-...-. .... .-.+++.. ++.+++.|+.+. .+.+||+.+..-...- ... ...-.
T Consensus 165 ~i~~wd~~~~~~~~~~~---~h~~-~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~---~~h-~~~v~ 230 (340)
T 1got_B 165 TCALWDIETGQQTTTFT---GHTG-DVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTF---TGH-ESDIN 230 (340)
T ss_dssp CEEEEETTTTEEEEEEC---CCSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEEE---CCC-SSCEE
T ss_pred cEEEEECCCCcEEEEEc---CCCC-ceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEE---cCC-cCCEE
Confidence 38889998876433221 1111 11222222 467788887654 3888998876543321 111 11122
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEE
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~y 330 (522)
+++...+..+++.|+.++ .+.+||+.+..-...-.. +........+.+ ++++++.|+.++ .+.+|
T Consensus 231 ~v~~~p~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~~d~-----~i~vw 297 (340)
T 1got_B 231 AICFFPNGNAFATGSDDA-----TCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDF-----NCNVW 297 (340)
T ss_dssp EEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTS-----EEEEE
T ss_pred EEEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEECCCC-----eEEEE
Confidence 333333333677777554 488999877643222111 111122233333 667778887654 48899
Q ss_pred ECCCCc
Q 009910 331 DILKGE 336 (522)
Q Consensus 331 d~~~~~ 336 (522)
|..+..
T Consensus 298 d~~~~~ 303 (340)
T 1got_B 298 DALKAD 303 (340)
T ss_dssp ETTTCC
T ss_pred EcccCc
Confidence 987654
No 92
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.93 E-value=0.58 Score=45.16 Aligned_cols=236 Identities=12% Similarity=0.100 Sum_probs=109.5
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCC
Q 009910 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 194 (522)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 194 (522)
.+|.+|..+.+++.+..... ...| ...+..-+++||+.+... ....++.||+.+++++.+....
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~-------~~~p---~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~-- 82 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA-------TQNP---TYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTVV-- 82 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE-------CSCC---CCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEEE--
T ss_pred EEEEEcCCCCeEEEeeeeec-------cCCc---ceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeeee--
Confidence 46777877787766543210 0001 111222256777765421 2346999999888877665310
Q ss_pred CCCCcceEEEE-ECC-EEEEEcccCCCCCccCcEEEEEcC-CCcEEEee---cCCCCCCCC----cceEEEEECCcEEEE
Q 009910 195 PVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLH---CTGTGPSPR----SNHVAALYDDKNLLI 264 (522)
Q Consensus 195 p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~---~~g~~p~~r----~~~~~~~~~~~~lyv 264 (522)
.....-..++. -++ .||+.+.. -..+.+||+. +.+...+. ..+..|.+| .-+.++...+..+|+
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred cCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 01111122333 234 56665421 2457788874 33333332 112222211 123344443333777
Q ss_pred EcCCCCCCCCCcEEEEEcC-CCcEEEeeeCCCCCCCccceEEEEE-CC-EEEEEcccCCCCCcCeEEEEEC--CCCceEE
Q 009910 265 FGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDI--LKGEWSV 339 (522)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~iyi~GG~~~~~~~~~v~~yd~--~~~~W~~ 339 (522)
.+..+ +.+++|++. ++....+..... +....-..++.. ++ .+|+.+... +.+.+|+. .+.+++.
T Consensus 157 ~~~~~-----~~v~~~~~~~~g~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 157 IDLGS-----DKVYVYNVSDAGQLSEQSVLTM-EAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EETTT-----TEEEEEEECTTSCEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEE
T ss_pred EeCCC-----CEEEEEEECCCCcEEEeeeEEc-CCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEE
Confidence 65322 368999987 566655443211 111111122222 44 477765433 23555554 4566655
Q ss_pred eccCCCCCC--CCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 340 AITSPSSSV--TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 340 ~~~~p~~~~--~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
+........ ........+.+.. +..+||+.+.. .+.|.+|++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~----~~~v~v~~~~~ 271 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRG----YNTLAVFAVTA 271 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEET----TTEEEEEEECG
T ss_pred eeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCC----CCEEEEEEECC
Confidence 433211100 1112233444443 33467665532 24688888763
No 93
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.90 E-value=0.42 Score=46.89 Aligned_cols=209 Identities=11% Similarity=0.035 Sum_probs=98.5
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
...++.+|+.+++-..+... .....+....- +++.+++............++.+|+.+.....+. .......
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~~~~~~ 239 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQE----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK---THAEGES 239 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC---CCCTTEE
T ss_pred cceEEEEECCCCceEEeecC----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee---eCCCCcc
Confidence 36799999999887666531 12223333333 4555555433222223568999999887766664 2121111
Q ss_pred ceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCC--C-ccceEEEEECCEEEEEccc---CCCCC
Q 009910 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--P-RAGCCGVLCGTKWYIAGGG---SRKKR 323 (522)
Q Consensus 251 ~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~--~-r~~~~~~~~~~~iyi~GG~---~~~~~ 323 (522)
....+.. +++.|+...... ......++++|+++++-+.+........ . ..+.....-+..|++.... .....
T Consensus 240 ~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp EEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred cccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence 1122222 445343332211 1111249999999988777655311000 0 0001111123334332100 00122
Q ss_pred cCeEEEEECCCCceEEeccCCCCCCC----CCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 324 HAETLIFDILKGEWSVAITSPSSSVT----SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 324 ~~~v~~yd~~~~~W~~~~~~p~~~~~----~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
...++++|+.+.+-+.+...+..... .........+..++ ..|+......+ ...++++++....|
T Consensus 319 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg-~~l~~~s~~~g--~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDD-KQILFTSDVHG--KPALYLATLPESVW 387 (388)
T ss_dssp CCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTS-SEEEEEECTTS--SCEEEEEECCGGGG
T ss_pred CCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCC-CEEEEEecCCC--ceeEEEEECChhcc
Confidence 35799999999887776643321000 00011222333333 34554443333 34688888877765
No 94
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.89 E-value=1.2 Score=41.99 Aligned_cols=250 Identities=10% Similarity=0.080 Sum_probs=120.8
Q ss_pred CCEEEEEcCc--CCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-C-CEEEEEcccCCCCCCce
Q 009910 98 GNKMIVVGGE--SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRV 173 (522)
Q Consensus 98 ~~~iyv~GG~--~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~ 173 (522)
++.+|+.... ......+.+++||+.+.++..+.... .......-++++.. + ++||+.... .
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--------~~~~~~~~~~i~~~~~~g~l~v~~~~-------~ 92 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE--------VNGYGGIPAGCQCDRDANQLFVADMR-------L 92 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE--------ETTEECCEEEEEECSSSSEEEEEETT-------T
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc--------cCCCCCCCceEEEecCCCcEEEEECC-------C
Confidence 4678887110 00111256899998888876553200 00000112334333 4 788887542 1
Q ss_pred eEEEEECCCCcEEEe-eecCCCCCCCcceEEEE-ECCEEEEEcccC---------CCCCccCcEEEEEcCCCcEEEeecC
Q 009910 174 SVWTFDTETECWSVV-EAKGDIPVARSGHTVVR-ASSVLILFGGED---------GKRRKLNDLHMFDLKSLTWLPLHCT 242 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~-~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~---------~~~~~~~~v~~yd~~t~~W~~~~~~ 242 (522)
.+++||+. ++...+ ...........-+.++. -++++|+..... ........+++||+. .+...+..
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence 49999998 777655 32110011111233333 357888765322 111123568999987 65554421
Q ss_pred CCCCCCCcceEEEEE----CCc-EEEEEcCCCCCCCCCcEEEEEcC-CCcEEEeeeCCCCCCC--ccceEEEEE-CCEEE
Q 009910 243 GTGPSPRSNHVAALY----DDK-NLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSP--RAGCCGVLC-GTKWY 313 (522)
Q Consensus 243 g~~p~~r~~~~~~~~----~~~-~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~p~~--r~~~~~~~~-~~~iy 313 (522)
....+ ...+.. .+. .+|+.... .+.+++||++ ++...........+.. ..-..++.. ++.+|
T Consensus 170 -~~~~~---~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 170 -AFQFP---NGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp -EESSE---EEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred -CCCCc---ceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 11111 233344 343 47776432 2469999976 4444322111001211 111223332 57888
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+..... +.+.+||+.+.+.......+. .....+++. .+...||+..... +.|++|+++...
T Consensus 241 v~~~~~-----~~i~~~d~~~g~~~~~~~~~~------~~~~~i~~~-~dg~~l~v~~~~~----~~l~~~~~~~~g 301 (314)
T 1pjx_A 241 VANWGS-----SHIEVFGPDGGQPKMRIRCPF------EKPSNLHFK-PQTKTIFVTEHEN----NAVWKFEWQRNG 301 (314)
T ss_dssp EEEETT-----TEEEEECTTCBSCSEEEECSS------SCEEEEEEC-TTSSEEEEEETTT----TEEEEEECSSCB
T ss_pred EEEcCC-----CEEEEEcCCCCcEeEEEeCCC------CCceeEEEC-CCCCEEEEEeCCC----CeEEEEeCCCCC
Confidence 875322 358999998544322221111 122334443 3334577655432 469999987643
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.89 E-value=1.2 Score=41.79 Aligned_cols=148 Identities=18% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
++..++.|+.++ .+.+||.... -..+ ..+....-.+++...+.. ++.|+.++ .+.+||+.+..
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~~~-~~~~----~~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d~~~~~ 216 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQNDKV-IKTF----SGIHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVDMHTGD 216 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETTEE-EEEE----CSSCSSCEEEEEEEETTE-EEEEETTS-----EEEEEETTTCC
T ss_pred CCCEEEEEECCC------CEEEEecCce-EEEE----eccCcccEEEEEEcCCCe-EEEccCCC-----eEEEEECCchh
Confidence 566677776543 3778883321 1222 111222233444555554 55665443 59999987654
Q ss_pred EEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCcc
Q 009910 287 WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (522)
Q Consensus 287 W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~ 365 (522)
-...-.. ....-.+++.. ++ .++.|+.++ .+.+||+.+.+.......+ ......+.+..++
T Consensus 217 ~~~~~~~----~~~~i~~~~~~~~~-~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~-- 278 (313)
T 3odt_A 217 VLRTYEG----HESFVYCIKLLPNG-DIVSCGEDR-----TVRIWSKENGSLKQVITLP------AISIWSVDCMSNG-- 278 (313)
T ss_dssp EEEEEEC----CSSCEEEEEECTTS-CEEEEETTS-----EEEEECTTTCCEEEEEECS------SSCEEEEEECTTS--
T ss_pred hhhhhhc----CCceEEEEEEecCC-CEEEEecCC-----EEEEEECCCCceeEEEecc------CceEEEEEEccCC--
Confidence 3322111 11111223333 44 456666543 4999999887655433211 1122334443333
Q ss_pred EEEEEcCCCCCCCCcEEEEEcccCCcccc
Q 009910 366 FLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (522)
Q Consensus 366 ~l~v~GG~~~~~~~~v~~y~~~~~~w~~~ 394 (522)
. ++.|+.++ .|.+|++++.++...
T Consensus 279 ~-~~~~~~dg----~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 279 D-IIVGSSDN----LVRIFSQEKSRWASE 302 (313)
T ss_dssp C-EEEEETTS----CEEEEESCGGGCCC-
T ss_pred C-EEEEeCCC----cEEEEeCCCCceeeh
Confidence 3 44566543 699999988876543
No 96
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.85 E-value=0.55 Score=43.41 Aligned_cols=202 Identities=11% Similarity=0.047 Sum_probs=101.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCC-CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
+++.+++++ ...++++|+.+ .+...+... ............-+++.+++++.... ....+|
T Consensus 52 dg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~ 113 (297)
T 2ojh_A 52 DGKYLLLNS------EGLLYRLSLAGDPSPEKVDTG----------FATICNNDHGISPDGALYAISDKVEF--GKSAIY 113 (297)
T ss_dssp TSSEEEEEE------TTEEEEEESSSCCSCEECCCT----------TCCCBCSCCEECTTSSEEEEEECTTT--SSCEEE
T ss_pred CCCEEEEEc------CCeEEEEeCCCCCCceEeccc----------cccccccceEECCCCCEEEEEEeCCC--CcceEE
Confidence 455555553 24789999988 766655431 11111111222224555555553221 345699
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-CC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
.++..+.....+.. ... ...++.. ++ .|++.++.+. ...+|.+|+.+.....+. ..+ .. ...+
T Consensus 114 ~~~~~~~~~~~~~~----~~~--~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~---~~~-~~-~~~~ 178 (297)
T 2ojh_A 114 LLPSTGGTPRLMTK----NLP--SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLT---HGE-GR-NDGP 178 (297)
T ss_dssp EEETTCCCCEECCS----SSS--EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECC---CSS-SC-EEEE
T ss_pred EEECCCCceEEeec----CCC--ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcc---cCC-Cc-cccc
Confidence 99998877555542 111 2222232 34 4554554332 236888888877776654 211 11 1223
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCC------CcC
Q 009910 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKK------RHA 325 (522)
Q Consensus 255 ~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~------~~~ 325 (522)
+.. +++.+++.+..+. ...+|.+++.......+... . .....+.+ +++.+++++..... ...
T Consensus 179 ~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~---~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDS---A---YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp EECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCC---S---EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred eECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecC---C---cccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 333 4453444443222 34688888777766655332 1 11222222 45544444433211 225
Q ss_pred eEEEEECCCCceEEec
Q 009910 326 ETLIFDILKGEWSVAI 341 (522)
Q Consensus 326 ~v~~yd~~~~~W~~~~ 341 (522)
.++++|+.+.+...+.
T Consensus 250 ~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEEETTSCSCEEEE
T ss_pred EEEEEecCCCCceeee
Confidence 6899999988776654
No 97
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.85 E-value=0.89 Score=43.67 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=54.9
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 176 (522)
+.+++.|+.+ ..+.+||+.+.+-...-. .....-.++... ++.+++.|+.+. .+.
T Consensus 85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~ 141 (366)
T 3k26_A 85 HPLLAVAGSR-----GIIRIINPITMQCIKHYV------------GHGNAINELKFHPRDPNLLLSVSKDH------ALR 141 (366)
T ss_dssp CEEEEEEETT-----CEEEEECTTTCCEEEEEE------------SCCSCEEEEEECSSCTTEEEEEETTS------CEE
T ss_pred CCEEEEecCC-----CEEEEEEchhceEeeeec------------CCCCcEEEEEECCCCCCEEEEEeCCC------eEE
Confidence 4677777744 468888887754322211 001111222222 456777777542 388
Q ss_pred EEECCCCcEEEeeecCCCCCCCcc-eEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 177 TFDTETECWSVVEAKGDIPVARSG-HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
.||..+.+-...-. .+...... .+++.. ++..++.|+.++ .+.+||+.+.
T Consensus 142 iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~ 193 (366)
T 3k26_A 142 LWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMDH------SLKLWRINSK 193 (366)
T ss_dssp EEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETTS------CEEEEESCSH
T ss_pred EEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCCC------CEEEEECCCC
Confidence 99998876443321 11111112 222222 356677776543 4888888764
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.80 E-value=0.18 Score=49.34 Aligned_cols=241 Identities=13% Similarity=0.055 Sum_probs=107.3
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++++++.|+.+ ..+.+||+.+..|..+.... .....-.+++.. ++.+++.|+.+. .+.
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~s~~~~~l~s~s~d~------~v~ 80 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFS----------DHDKIVTCVDWAPKSNRIVTCSQDR------NAY 80 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBC----------CCSSCEEEEEECTTTCCEEEEETTS------SEE
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEe----------cCCceEEEEEEeCCCCEEEEEeCCC------eEE
Confidence 45566777644 46788898888887766531 111111222222 456777777542 388
Q ss_pred EEECCCCc-EEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCc-EEEeecCCCCCCCCcceE
Q 009910 177 TFDTETEC-WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 177 ~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~ 253 (522)
.||..+.. |...... ......-.+++.. ++++++.|+.+. .+.+||+.+.+ |..+... ..+....-.+
T Consensus 81 vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~ 151 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHL-KRPLRSTILS 151 (377)
T ss_dssp EC------CCCCEEEC--CCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEE-CSSCCSCEEE
T ss_pred EEEcCCCCceeeeeEe--cccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEe-ecccCCCeEE
Confidence 88888776 5443321 1111111222222 466777776543 37778877654 3222210 1112222223
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE----------------EEeeeCCCCCCCccceEEEEE--CCEEEEE
Q 009910 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW----------------TRIKIRGFHPSPRAGCCGVLC--GTKWYIA 315 (522)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W----------------~~~~~~~~~p~~r~~~~~~~~--~~~iyi~ 315 (522)
++...+..+++.|+.++ .+.+||+.+... +.+... ... ....++.+ ++++++.
T Consensus 152 ~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCADR-----KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSG-GWVHAVGFSPSGNALAY 222 (377)
T ss_dssp EEECTTSSEEEEEESSS-----CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCS-SSEEEEEECTTSSCEEE
T ss_pred EEEcCCCCEEEEEeCCC-----EEEEEEEEecccCCCccccccccccchhhhhhcc---cCC-ceEEEEEECCCCCEEEE
Confidence 33443433677776543 488888754321 111111 111 11122222 5677777
Q ss_pred cccCCCCCcCeEEEEECCCCce--EEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCccc
Q 009910 316 GGGSRKKRHAETLIFDILKGEW--SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 393 (522)
Q Consensus 316 GG~~~~~~~~~v~~yd~~~~~W--~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w~~ 393 (522)
|+.++ .+.+||+.+.+- ..+.... ........+.+..+ +.+++.|+.+ .+.+|+.....|..
T Consensus 223 ~~~d~-----~i~iwd~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~--~~~l~~~~~~-----~~~~~~~~~~~~~~ 286 (377)
T 3dwl_C 223 AGHDS-----SVTIAYPSAPEQPPRALITVK----LSQLPLRSLLWANE--SAIVAAGYNY-----SPILLQGNESGWAH 286 (377)
T ss_dssp EETTT-----EEC-CEECSTTSCEEECCCEE----CSSSCEEEEEEEET--TEEEEEESSS-----SEEEECCCC---CC
T ss_pred EeCCC-----cEEEEECCCCCCcceeeEeec----CCCCceEEEEEcCC--CCEEEEEcCC-----cEEEEEeCCCceEE
Confidence 77554 377888776653 1111111 11112233444433 3466666533 46677776655544
No 99
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.78 E-value=0.59 Score=45.76 Aligned_cols=188 Identities=11% Similarity=0.059 Sum_probs=92.8
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
+++.++.|+.+. .+.+||..+++-...-. .... .-.+++.. + +.+++.||.+. .+.+||+.+
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~---~h~~-~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYN---AHSS-EVNCVAACPGKDTIFLSCGEDG------RILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSS-CEEEEEECTTCSSCEEEEETTS------CEEECCTTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---CCCC-CEEEEEEccCCCceeeeeccCC------ceEEEECCC
Confidence 566777777543 38889998876433221 1111 11222222 2 35777777543 377888876
Q ss_pred CcEEEeecCCCCCCCCcceEEEEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--C
Q 009910 234 LTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G 309 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~ 309 (522)
.+-.... ..........++.+ ++..+++.|+.+. .+.+||+.+..-... . ........++.+ +
T Consensus 214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~~~~~~~--~---~~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 214 PKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKNPDSAQT--S---AVHSQNITGLAYSYH 280 (357)
T ss_dssp SSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSCGGGCEE--E---CCCSSCEEEEEECSS
T ss_pred Cceeeee---eeccccccccchhhhhcccceEEEeeccc-----ceeEEECCCCcEeEE--E---eccceeEEEEEEcCC
Confidence 5432221 11111112223333 2233677776543 488999876542211 1 111111122222 3
Q ss_pred -CEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 310 -TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 310 -~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
.++++.|+.++. |.+||..+.+...... . ......+.+...+ ..+++.||.++ .|.++++.+
T Consensus 281 ~~~~lasgs~D~~-----i~iwd~~~~~~~~~~~------H-~~~V~~vafsP~d-~~~l~s~s~Dg----~v~iW~~~~ 343 (357)
T 4g56_B 281 SSPFLASISEDCT-----VAVLDADFSEVFRDLS------H-RDFVTGVAWSPLD-HSKFTTVGWDH----KVLHHHLPS 343 (357)
T ss_dssp SSCCEEEEETTSC-----EEEECTTSCEEEEECC------C-SSCEEEEEECSSS-TTEEEEEETTS----CEEEEECC-
T ss_pred CCCEEEEEeCCCE-----EEEEECCCCcEeEECC------C-CCCEEEEEEeCCC-CCEEEEEcCCC----eEEEEECCC
Confidence 356667776544 8899998876443221 1 1122333443222 33667777654 578888754
Q ss_pred C
Q 009910 389 N 389 (522)
Q Consensus 389 ~ 389 (522)
.
T Consensus 344 ~ 344 (357)
T 4g56_B 344 E 344 (357)
T ss_dssp -
T ss_pred C
Confidence 4
No 100
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.75 E-value=0.44 Score=46.59 Aligned_cols=195 Identities=12% Similarity=0.061 Sum_probs=92.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
.+..++.|+.+. .|.++|+.+++-..............-.+++. -+++.++.|+.+. .+.++|+.+.
T Consensus 92 ~d~~l~~~s~dg------~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~------~i~iwd~~~~ 159 (344)
T 4gqb_B 92 GERGILVASDSG------AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI------CIKVWDLAQQ 159 (344)
T ss_dssp TTTEEEEEETTS------EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTT
T ss_pred CCCeEEEEECCC------EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECCCC
Confidence 334445665432 47788887765222110000000111122222 2567778777654 3888999887
Q ss_pred cEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE---CC
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GT 310 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~ 310 (522)
+-...- ...... -.+++.. ++..+++.|+.++ .+.+||+.+.+-...-.. ........++.. ++
T Consensus 160 ~~~~~~---~~h~~~-V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 160 VVLSSY---RAHAAQ-VTCVAASPHKDSVFLSCSEDN-----RILLWDTRCPKPASQIGC---SAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp EEEEEE---CCCSSC-EEEEEECSSCTTEEEEEETTS-----CEEEEETTSSSCEEECC-------CCCEEEEEECSSCT
T ss_pred cEEEEE---cCcCCc-eEEEEecCCCCCceeeecccc-----ccccccccccceeeeeec---ceeeccceeeeecCCCC
Confidence 543321 111111 1122222 3333677776654 488999887653322111 111111122222 45
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 311 ~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
++++.|+.++ .|.+||+.+.+-.. .... .......+.+...+ ..+++.|+.++ .|.+||..+.+
T Consensus 228 ~~l~sg~~dg-----~v~~wd~~~~~~~~--~~~~----h~~~v~~v~fsp~g-~~~lasgs~D~----~i~vwd~~~~~ 291 (344)
T 4gqb_B 228 EVFVFGDENG-----TVSLVDTKSTSCVL--SSAV----HSQCVTGLVFSPHS-VPFLASLSEDC----SLAVLDSSLSE 291 (344)
T ss_dssp TEEEEEETTS-----EEEEEESCC--CCE--EEEC----CSSCEEEEEECSSS-SCCEEEEETTS----CEEEECTTCCE
T ss_pred cceEEeccCC-----cEEEEECCCCcEEE--EEcC----CCCCEEEEEEccCC-CeEEEEEeCCC----eEEEEECCCCc
Confidence 6788887654 48899987654221 1111 11122333443222 34666777653 47788876654
No 101
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.75 E-value=1.2 Score=47.96 Aligned_cols=154 Identities=8% Similarity=0.004 Sum_probs=79.4
Q ss_pred cCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCC-cEEEeeeCCCCCCC-
Q 009910 223 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSP- 299 (522)
Q Consensus 223 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~p~~- 299 (522)
...++++|+.+.+-..+.. ..........++.. +++ .++++..+.......++.+|+.++ ....+..... +..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT--GEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCC--CSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCC
T ss_pred eeEEEEEECCCCceEeecc--CCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeE
Confidence 3579999999887655531 11111222223333 445 444444333333457999999988 7766643211 100
Q ss_pred -ccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCc-EEEEEeeCCccEEEEEcCCCC
Q 009910 300 -RAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGF-TLVLVQHKEKDFLVAFGGIKK 375 (522)
Q Consensus 300 -r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~-~~~~~~~~~~~~l~v~GG~~~ 375 (522)
.....+..- ++++++.+..++ ...+|.+|........+... .... ..+.+.. +...|++.+...+
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~-------~~~v~~~~~~sp-dg~~l~~~~~~~~ 378 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKG-------EWEVTNFAGFDP-KGTRLYFESTEAS 378 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCS-------SSCEEEEEEECT-TSSEEEEEESSSC
T ss_pred CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCC-------CeEEEeeeEEcC-CCCEEEEEecCCC
Confidence 001112222 667666554432 36789999777776665421 1112 2234432 3345665555433
Q ss_pred CCCCcEEEEEcccCCc
Q 009910 376 EPSNQVEVLSIEKNES 391 (522)
Q Consensus 376 ~~~~~v~~y~~~~~~w 391 (522)
.....++.+|+.+.+.
T Consensus 379 ~~~~~l~~~d~~~~~~ 394 (706)
T 2z3z_A 379 PLERHFYCIDIKGGKT 394 (706)
T ss_dssp TTCBEEEEEETTCCCC
T ss_pred CceEEEEEEEcCCCCc
Confidence 2245788888776653
No 102
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.72 E-value=0.68 Score=44.95 Aligned_cols=193 Identities=10% Similarity=0.080 Sum_probs=99.6
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++++++.||.+. .+.++|..+++|....... ......-.+++. -++.+++.|+.+.. +.++|..+.
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~s~D~~------v~iw~~~~~ 93 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFDAT------TCIWKKNQD 93 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEEC-SSCSSCEEEEEECTTSSEEEEEETTSC------EEEEEECCC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeeec-cccCCcEEEEEECCCCCEEEEEECCCc------EEEEEccCC
Confidence 567777777643 3777888888876433210 011111122222 24677777876543 677888777
Q ss_pred cEEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC-cEEEeeeCCCCCCCccceEEEEE--CC
Q 009910 235 TWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC--GT 310 (522)
Q Consensus 235 ~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~p~~r~~~~~~~~--~~ 310 (522)
.+..+.. +.. ...-.+++...+..+++.|+.++ .+.+||+.+. .+..+.... ........+.. ++
T Consensus 94 ~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 94 DFECVTT---LEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDEYECVSVLN---SHTQDVKHVVWHPSQ 162 (345)
T ss_dssp -EEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSCEEEEEEEC---CCCSCEEEEEECSSS
T ss_pred CeEEEEE---ccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCCeEEEEEec---CcCCCeEEEEECCCC
Confidence 6655431 111 11112333333333677777654 4888888654 343333321 11111222222 56
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 311 ~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
++++.|+.++. +.+||..+..|..+...... ......+.+..+ +..++.|+.++ .|.+++..
T Consensus 163 ~~l~s~s~d~~-----i~~w~~~~~~~~~~~~~~~h----~~~v~~l~~sp~--g~~l~s~s~D~----~v~iW~~~ 224 (345)
T 3fm0_A 163 ELLASASYDDT-----VKLYREEEDDWVCCATLEGH----ESTVWSLAFDPS--GQRLASCSDDR----TVRIWRQY 224 (345)
T ss_dssp SCEEEEETTSC-----EEEEEEETTEEEEEEEECCC----SSCEEEEEECTT--SSEEEEEETTS----CEEEEEEE
T ss_pred CEEEEEeCCCc-----EEEEEecCCCEEEEEEecCC----CCceEEEEECCC--CCEEEEEeCCC----eEEEeccc
Confidence 77777776654 88899888888755433221 112233344333 33666777654 46666653
No 103
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.70 E-value=2.9 Score=45.05 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=73.0
Q ss_pred eEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (522)
.+-++.++.||+... .+.++.+|..+. .|+.-......... .........+.+..+++||+...
T Consensus 64 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~v~v~~~----- 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAG---EACCDAVNRGVAVWKGKVYVGVL----- 129 (689)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEETTEEEEECT-----
T ss_pred ecCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccc---cccccCCCCccEEECCEEEEEcc-----
Confidence 344678999999764 356999998765 68865431100000 00000011234567888887542
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEe
Q 009910 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 239 (522)
...++.+|.+|++ |+.-.............+.++.++.+|+-.+.... ..-..++.||+++.+ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEec
Confidence 1359999999876 87654201001112222345568888774322111 134579999998865 8764
No 104
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.69 E-value=0.32 Score=47.78 Aligned_cols=150 Identities=13% Similarity=0.059 Sum_probs=76.3
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
+++.++.|+.+. .+.+||+.+.+-...- ...... -.+++.. ++..+++.|+.++ .+.+||+.+.
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~---~~h~~~-v~~v~~s~~~~~~~~s~~~dg-----~v~~wd~~~~ 214 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSY---NAHSSE-VNCVAACPGKDTIFLSCGEDG-----RILLWDTRKP 214 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSC-EEEEEECTTCSSCEEEEETTS-----CEEECCTTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE---cCCCCC-EEEEEEccCCCceeeeeccCC-----ceEEEECCCC
Confidence 467777777654 3788999887644332 111111 1122222 2323666676543 4888888765
Q ss_pred cEEEeeeCCCCCCCccceEEEEE---CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeC
Q 009910 286 IWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHK 362 (522)
Q Consensus 286 ~W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~ 362 (522)
+-...... ........++.+ ++.+++.|+.++. +.+||+.+.+-.... .. .......+.+...
T Consensus 215 ~~~~~~~~---~~~~~~v~~v~~sp~~~~~la~g~~d~~-----i~~wd~~~~~~~~~~--~~----~~~~v~~l~~sp~ 280 (357)
T 4g56_B 215 KPATRIDF---CASDTIPTSVTWHPEKDDTFACGDETGN-----VSLVNIKNPDSAQTS--AV----HSQNITGLAYSYH 280 (357)
T ss_dssp SCBCBCCC---TTCCSCEEEEEECTTSTTEEEEEESSSC-----EEEEESSCGGGCEEE--CC----CSSCEEEEEECSS
T ss_pred ceeeeeee---ccccccccchhhhhcccceEEEeecccc-----eeEEECCCCcEeEEE--ec----cceeEEEEEEcCC
Confidence 43222111 111111223333 4567778876654 889998775422211 11 1112233444322
Q ss_pred CccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 363 EKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 363 ~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+ ..+++.|+.++ .|.+||+++.+
T Consensus 281 ~-~~~lasgs~D~----~i~iwd~~~~~ 303 (357)
T 4g56_B 281 S-SPFLASISEDC----TVAVLDADFSE 303 (357)
T ss_dssp S-SCCEEEEETTS----CEEEECTTSCE
T ss_pred C-CCEEEEEeCCC----EEEEEECCCCc
Confidence 3 34666676543 58888887665
No 105
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.69 E-value=1.4 Score=41.15 Aligned_cols=237 Identities=9% Similarity=0.022 Sum_probs=119.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+||.... ...+.+||+....-..+..... .......-+.++. -++.||+.+... ...+
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~-------~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i 102 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGK-------RDSQLLYPNRVAVVRNSGDIIVTERSP-----THQI 102 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSS-------STTCBSSEEEEEEETTTTEEEEEECGG-----GCEE
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCC-------CcccccCceEEEEEcCCCeEEEEcCCC-----CCEE
Confidence 3568887542 2468899988654444332100 0000112234444 268899886321 1358
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
.+||.....-..+. .+....-+.+++. ++++|+.... .+.+.+||+.......+...+.+.. -...
T Consensus 103 ~~~d~~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~~~---p~~i 169 (286)
T 1q7f_A 103 QIYNQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLEF---PNGV 169 (286)
T ss_dssp EEECTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCSS---EEEE
T ss_pred EEECCCCcEEEEec----CccCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCccCC---cEEE
Confidence 89996554433332 1111222344442 5678886432 2468999987655444431111111 2234
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
+.-.+..+|+.... .+.+.+||+.......+...+.. ..-.+++.. ++.+|+....++ ..|.+||+.
T Consensus 170 ~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~ 237 (286)
T 1q7f_A 170 VVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEILIADNHNN----FNLTIFTQD 237 (286)
T ss_dssp EECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTS---CSEEEEEECTTCCEEEEECSSS----CEEEEECTT
T ss_pred EECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCC----EEEEEECCC
Confidence 44444458886532 24699999876654444322111 111223332 578888765432 158999987
Q ss_pred CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 334 ~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
...-..+.... .......+++.. .+.||+... .+.|.+|+...
T Consensus 238 g~~~~~~~~~~-----~~~~~~~i~~~~--~g~l~vs~~-----~~~v~v~~~~~ 280 (286)
T 1q7f_A 238 GQLISALESKV-----KHAQCFDVALMD--DGSVVLASK-----DYRLYIYRYVQ 280 (286)
T ss_dssp SCEEEEEEESS-----CCSCEEEEEEET--TTEEEEEET-----TTEEEEEECSC
T ss_pred CCEEEEEcccC-----CCCcceeEEECC--CCcEEEECC-----CCeEEEEEccc
Confidence 65444443211 111122344442 345777742 24688887644
No 106
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.65 E-value=1.6 Score=41.88 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=94.6
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCC--CcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
+++.++.|+.+. .+.++|+.. ..++.+.. +......-..+.+ ++.+++.|+.+.. +.++|.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~~------i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYDDT------VRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETTSC------EEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCCCe------EEEEEC
Confidence 466777777542 377888743 34544432 1111111122222 4667777776543 777888
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEECC--cEEEEEcCCCCCCCCCcEEEEEcCC------CcEEEeeeCCCCCCCccce
Q 009910 232 KSLTWLPLHCTGTGPSPRSNHVAALYDD--KNLLIFGGSSKSKTLNDLYSLDFET------MIWTRIKIRGFHPSPRAGC 303 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~lyv~GG~~~~~~~~~v~~yd~~~------~~W~~~~~~~~~p~~r~~~ 303 (522)
.+..|..+..... . ...-.++....+ ...++.|+.++ .+.+||+.+ ..|..+..... .....-.
T Consensus 183 ~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 254 (330)
T 2hes_X 183 YDDDWECVAVLNG-H-EGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVY 254 (330)
T ss_dssp ETTEEEEEEEECC-C-SSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEE
T ss_pred CCCCeeEEEEccC-C-CCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeeccc-ccccceE
Confidence 7777766542111 1 111112222222 32556666543 366666533 24555544311 0112222
Q ss_pred EEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 009910 304 CGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (522)
Q Consensus 304 ~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (522)
+++...+.+++.||.++. +.+||..+..|..+...... ........+.+...+.+.+++.||.++ .|.+
T Consensus 255 ~v~~s~~~~l~s~~~dg~-----v~iw~~~~~~~~~~~~~~~~--h~~~~v~~v~~~~~~~~~~las~s~Dg----~v~~ 323 (330)
T 2hes_X 255 NVAWGFNGLIASVGADGV-----LAVYEEVDGEWKVFAKRALC--HGVYEINVVKWLELNGKTILATGGDDG----IVNF 323 (330)
T ss_dssp EEEECTTSCEEEEETTSC-----EEEEEEETTEEEEEEEESCT--TTTSCEEEEEEC-----CCEEEEETTS----EEEE
T ss_pred EEEEcCCCEEEEEeCCCE-----EEEEEcCCCceEEEeccccc--cccceEEEEEEecCCCceEEEEecCCC----cEEE
Confidence 333334556677776544 88899888888665421110 111122333333211234677787654 4777
Q ss_pred EEccc
Q 009910 384 LSIEK 388 (522)
Q Consensus 384 y~~~~ 388 (522)
+++++
T Consensus 324 W~~~~ 328 (330)
T 2hes_X 324 WSLEK 328 (330)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 77653
No 107
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.63 E-value=1.7 Score=42.00 Aligned_cols=249 Identities=13% Similarity=0.130 Sum_probs=110.5
Q ss_pred EEEEcCcCCCCCccc--EEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEE
Q 009910 101 MIVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 101 iyv~GG~~~~~~~~~--v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
.+++|.+.... ... +|.+|..+.+++.+.... ...| . +.+..- +..||+.+... .......+|.
T Consensus 15 ~~~vg~y~~~~-~~~i~~~~~d~~~g~~~~~~~~~--------~~~p--~-~l~~spdg~~l~~~~~~~-~~~~~v~~~~ 81 (361)
T 3scy_A 15 TMLVGTYTSGN-SKGIYTFRFNEETGESLPLSDAE--------VANP--S-YLIPSADGKFVYSVNEFS-KDQAAVSAFA 81 (361)
T ss_dssp EEEEEECCSSS-CCEEEEEEEETTTCCEEEEEEEE--------CSCC--C-SEEECTTSSEEEEEECCS-STTCEEEEEE
T ss_pred EEEEEeccCCC-CCCEEEEEEeCCCCCEEEeeccc--------CCCC--c-eEEECCCCCEEEEEEccC-CCCCcEEEEE
Confidence 34456554322 233 555677777777665420 0011 1 111122 34566665431 1222334677
Q ss_pred EECCCCcEEEeeecCCCCC-CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc-EE----EeecCCCCCCC---
Q 009910 178 FDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WL----PLHCTGTGPSP--- 248 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~----~~~~~g~~p~~--- 248 (522)
++..+++.+.+.. .+. ......++.-++.||+... . -..+.+|++.+.. .. .....+..|.+
T Consensus 82 ~~~~~g~~~~~~~---~~~~~~~p~~~~~dg~~l~~~~~-~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 82 FDKEKGTLHLLNT---QKTMGADPCYLTTNGKNIVTANY-S-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EETTTTEEEEEEE---EECSSSCEEEEEECSSEEEEEET-T-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred EeCCCCcEEEeeE---eccCCCCcEEEEECCCEEEEEEC-C-----CCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 7777787776653 221 1122233333345665432 1 2457888886432 11 11111111211
Q ss_pred --CcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCc-------EEEe---eeCCCCCCCccceEEEEE-CC-EEE
Q 009910 249 --RSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI-------WTRI---KIRGFHPSPRAGCCGVLC-GT-KWY 313 (522)
Q Consensus 249 --r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~---~~~~~~p~~r~~~~~~~~-~~-~iy 313 (522)
...|+++... ++.+|+.+.. .+.+++|++.... .... .... .+....-..++.. ++ .+|
T Consensus 153 ~~~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 153 TMPHLHCVRITPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp SSCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSEEE
T ss_pred CCCcceEEEECCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCEEE
Confidence 1124444443 4446665422 2357788765443 2211 1100 0111111223332 44 577
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
+.+..+ +.+.+||+.+.+++.+...+.. +....+...+.+..++ .+||+..... .+.+.+|+++
T Consensus 227 v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~-~~~~~~~~~i~~spdg-~~l~v~~~~~---~~~i~v~~~~ 290 (361)
T 3scy_A 227 LINEIG-----GTVIAFRYADGMLDEIQTVAAD-TVNAQGSGDIHLSPDG-KYLYASNRLK---ADGVAIFKVD 290 (361)
T ss_dssp EEETTT-----CEEEEEEEETTEEEEEEEEESC-SSCCCCEEEEEECTTS-SEEEEEECSS---SCEEEEEEEC
T ss_pred EEcCCC-----CeEEEEEecCCceEEeEEEecC-CCCCCCcccEEECCCC-CEEEEECCCC---CCEEEEEEEc
Confidence 665322 3588898887777655432211 1111223444554333 4566544320 2357777775
No 108
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.61 E-value=2 Score=42.42 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=56.5
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcE-EEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN-LLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
++++++.|+.++ .+.+||+.+.+-.... .......-.+++...+.. +++.|+.+ ..+.+||+.+.
T Consensus 258 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~ 323 (420)
T 3vl1_A 258 YGKYVIAGHVSG------VITVHNVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSP 323 (420)
T ss_dssp TTEEEEEEETTS------CEEEEETTTCCEEEEE---CCTTSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCceeEEc---ccccCCCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCC
Confidence 467777776543 3889999876533322 111111222333333332 56666654 35899999775
Q ss_pred c--EEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 286 I--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 286 ~--W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
. -..+... ....-.++...++++++.|+.++. +.+||+..
T Consensus 324 ~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d~~-----v~iw~~~~ 365 (420)
T 3vl1_A 324 ECPVGEFLIN----EGTPINNVYFAAGALFVSSGFDTS-----IKLDIISD 365 (420)
T ss_dssp TSCSEEEEES----TTSCEEEEEEETTEEEEEETTTEE-----EEEEEECC
T ss_pred cCchhhhhcc----CCCCceEEEeCCCCEEEEecCCcc-----EEEEeccC
Confidence 3 2333221 111122333347888888876543 77787655
No 109
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.58 E-value=0.95 Score=44.25 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=54.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcccCCCCCccCcEEEEEc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
++.+++.|+.+ ..+..||..+.+-..... .+... .++... ++.+++.|+.++ .+.+||+
T Consensus 111 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~ 173 (408)
T 4a11_B 111 DTGMFTSSSFD------KTLKVWDTNTLQTADVFN---FEETV--YSHHMSPVSTKHCLVAVGTRGP------KVQLCDL 173 (408)
T ss_dssp CTTCEEEEETT------SEEEEEETTTTEEEEEEE---CSSCE--EEEEECSSCSSCCEEEEEESSS------SEEEEES
T ss_pred CCcEEEEEeCC------CeEEEeeCCCCccceecc---CCCce--eeeEeecCCCCCcEEEEEcCCC------eEEEEeC
Confidence 44566777653 248889998877554432 22221 222221 345777776543 4889998
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 232 KSLTWLPLHCTGTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
.+.+-...- ... ...-.+++...+ ..+++.|+.++ .+..||+.+.
T Consensus 174 ~~~~~~~~~---~~~-~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~ 219 (408)
T 4a11_B 174 KSGSCSHIL---QGH-RQEILAVSWSPRYDYILATASADS-----RVKLWDVRRA 219 (408)
T ss_dssp SSSCCCEEE---CCC-CSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCS
T ss_pred CCcceeeee---cCC-CCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCC
Confidence 776432221 111 111122333333 32566776543 4888888654
No 110
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.58 E-value=0.67 Score=48.93 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=72.2
Q ss_pred eEEEEECCEEEEEcCcCCCCCcccEEEEEc-CCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCC
Q 009910 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNF-DRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~-~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 168 (522)
.+-++.++.||+.... .+.++.+|. .+. .|+.-......... .........+.+..+++||+....
T Consensus 56 ~~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~d--- 124 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKA---VMCCDVVDRGLAYGAGQIVKKQAN--- 124 (571)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGG---GCTTCSCCCCCEEETTEEEEECTT---
T ss_pred cccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccc---cccccccccccEEECCEEEEEeCC---
Confidence 4456679999998652 257999998 654 69875432100000 000000112345678999886431
Q ss_pred CCCceeEEEEECCCCc--EEEeeecCCCCCC-CcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEe
Q 009910 169 GSDRVSVWTFDTETEC--WSVVEAKGDIPVA-RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (522)
Q Consensus 169 ~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 239 (522)
..++.+|..+++ |+.-.. ..+.. ....+-++.++.+|+-.+.... ..-..++.||+++.+ |+.-
T Consensus 125 ----g~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 125 ----GHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ----SEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred ----CEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEc
Confidence 359999999875 875431 11100 1122334568888875432111 123569999998754 8754
No 111
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.55 E-value=1.3 Score=42.02 Aligned_cols=185 Identities=9% Similarity=0.050 Sum_probs=83.9
Q ss_pred eEEEEECC--CCcEEEeeecCCCCCCCcceEEEEE-CC-EEEEEcccCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCC
Q 009910 174 SVWTFDTE--TECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSP 248 (522)
Q Consensus 174 ~v~~yd~~--t~~W~~~~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~g~~p~~ 248 (522)
.+..|++. +++++.+.. .+....-..++.. ++ .||+.+.. -..+.+||+... ....+.. .+..
T Consensus 61 ~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~---~~~~ 128 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAE---SALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDV---VEGL 128 (343)
T ss_dssp EEEEEEECTTTCCEEEEEE---EECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEE---ECCC
T ss_pred eEEEEEecCCCCceeeccc---cccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCcccccccc---ccCC
Confidence 36666555 778776543 2211122233332 34 46555421 134788887422 2222221 1111
Q ss_pred CcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCC-CcEEEee--eCCCCCCCccceEEEEE-CC-EEEEEcccCCCC
Q 009910 249 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIK--IRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKK 322 (522)
Q Consensus 249 r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~--~~~~~p~~r~~~~~~~~-~~-~iyi~GG~~~~~ 322 (522)
..-+.++.. +++.+|+.+..+ +.+.+||+.+ .....+. ... .+....-..++.. ++ .+|+.+..+
T Consensus 129 ~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~~~~--- 199 (343)
T 1ri6_A 129 DGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELN--- 199 (343)
T ss_dssp TTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTT---
T ss_pred CCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeecccccc-cCCCCCcceEEECCCCCEEEEEeCCC---
Confidence 112233333 344566654222 3699999987 6666443 210 0111111122232 34 577765433
Q ss_pred CcCeEEEEECC--CCceEEecc---CCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 323 RHAETLIFDIL--KGEWSVAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 323 ~~~~v~~yd~~--~~~W~~~~~---~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
+.+.+||+. +.+++.+.. .+... ........+.+.. +...||+.+.. .+.+.+|+++
T Consensus 200 --~~i~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~i~~s~-dg~~l~v~~~~----~~~i~v~d~~ 261 (343)
T 1ri6_A 200 --SSVDVWELKDPHGNIECVQTLDMMPENF-SDTRWAADIHITP-DGRHLYACDRT----ASLITVFSVS 261 (343)
T ss_dssp --TEEEEEESSCTTSCCEEEEEEECSCTTC-CSCCCEEEEEECT-TSSEEEEEETT----TTEEEEEEEC
T ss_pred --CEEEEEEecCCCCcEEEEeeccccCccc-cccCCccceEECC-CCCEEEEEecC----CCEEEEEEEc
Confidence 358888884 455543222 12110 1111222344443 33467665532 2368888887
No 112
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.55 E-value=0.27 Score=49.61 Aligned_cols=192 Identities=9% Similarity=0.033 Sum_probs=94.3
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+++.|+.+ ..|.++|+.+..-...... ......-.+++. .++.+++.|+.+. .|
T Consensus 131 ~~~~lasGs~d-----g~i~lWd~~~~~~~~~~~~----------~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v 189 (435)
T 4e54_B 131 HPSTVAVGSKG-----GDIMLWNFGIKDKPTFIKG----------IGAGGSITGLKFNPLNTNQFYASSMEG------TT 189 (435)
T ss_dssp CTTCEEEEETT-----SCEEEECSSCCSCCEEECC----------CSSSCCCCEEEECSSCTTEEEEECSSS------CE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCceeEEEc----------cCCCCCEEEEEEeCCCCCEEEEEeCCC------EE
Confidence 35577788755 4688888876543322211 000111122332 2456667777543 37
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
.++|+.++....+...... .....++.. -++.+++.|+.++ .+.++|+....-..+. .-...-.+
T Consensus 190 ~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~------~h~~~v~~ 255 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTI--NIWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLR------MHKKKVTH 255 (435)
T ss_dssp EEEETTSCEEEEEECCSSC--SCCCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSB------CCSSCEEE
T ss_pred EEeeccCCceeEEeccCCC--CccEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEe------cccceEEe
Confidence 8889988876655431111 111122333 3567778887543 4788888654322111 11111122
Q ss_pred EEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEE
Q 009910 255 ALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 255 ~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~y 330 (522)
+.+ .+..+++.|+.++ .+.+||+.+..-...... ...-.....++.+ ++..++.|+.++. |.+|
T Consensus 256 v~~~p~~~~~~~s~s~d~-----~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~spdg~~l~s~~~D~~-----i~iw 323 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQ-----TVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSE-----IRVY 323 (435)
T ss_dssp EEECTTCSSEEEEEETTS-----BCCEEETTTCCSSSCCSB--CCBCSSCEEECCBCTTSSEEEEEESSSC-----EEEE
T ss_pred eeecCCCceEEEEecCcc-----eeeEEecccccccceEEE--eeeccccccceeECCCCCeeEEEcCCCE-----EEEE
Confidence 233 2333666666543 477888765431110000 0000111112222 5667777776654 8899
Q ss_pred ECCCCc
Q 009910 331 DILKGE 336 (522)
Q Consensus 331 d~~~~~ 336 (522)
|..+..
T Consensus 324 d~~~~~ 329 (435)
T 4e54_B 324 SASQWD 329 (435)
T ss_dssp ESSSSS
T ss_pred ECCCCc
Confidence 987654
No 113
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.53 E-value=1.5 Score=40.68 Aligned_cols=226 Identities=11% Similarity=-0.024 Sum_probs=117.7
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.+|+.... .+.+.+||+. ..+...... .....-++++.. ++.+|+..... ..++
T Consensus 25 ~g~l~v~~~~-----~~~v~~~d~~-~~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~------~~i~ 81 (299)
T 2z2n_A 25 KGKVWITQHK-----ANMISCINLD-GKITEYPLP-----------TPDAKVMCLTISSDGEVWFTENAA------NKIG 81 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-CCEEEEECS-----------STTCCEEEEEECTTSCEEEEETTT------TEEE
T ss_pred CCCEEEEecC-----CCcEEEEcCC-CCeEEecCC-----------cccCceeeEEECCCCCEEEeCCCC------CeEE
Confidence 4678876421 2468999988 666654421 011122344443 56788864321 2488
Q ss_pred EEECCCCcEEEeeecCCCC-CCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
+||+. ++.+.+. +| ....-+.++.. ++.+|+.... ...+.+||+ +.+........ ....-..+
T Consensus 82 ~~~~~-g~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i 146 (299)
T 2z2n_A 82 RITKK-GIIKEYT----LPNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFI 146 (299)
T ss_dssp EECTT-SCEEEEE----CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEE
T ss_pred EECCC-CcEEEEe----CCCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceE
Confidence 99986 5565554 22 12223344443 4788886432 245889998 66666553211 11122334
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
+.-.+..+|+.... .+.+++||+ ++....+.... ....-.+.+.. ++++|+..... +.+++||+
T Consensus 147 ~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~- 211 (299)
T 2z2n_A 147 TLGSDNALWFTENQ-----NNAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEIIG-----NKIGRITT- 211 (299)
T ss_dssp EECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-
T ss_pred EEcCCCCEEEEeCC-----CCEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccCC-----ceEEEECC-
Confidence 44434347775421 246999999 77776653211 11111233332 56788865322 35899999
Q ss_pred CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 334 ~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
+.+...+.. + ........+.+..+ +.||+.... .+.|.+||+.
T Consensus 212 ~g~~~~~~~-~----~~~~~~~~i~~~~~--g~l~v~~~~----~~~i~~~d~~ 254 (299)
T 2z2n_A 212 SGEITEFKI-P----TPNARPHAITAGAG--IDLWFTEWG----ANKIGRLTSN 254 (299)
T ss_dssp TCCEEEEEC-S----STTCCEEEEEECST--TCEEEEETT----TTEEEEEETT
T ss_pred CCcEEEEEC-C----CCCCCceeEEECCC--CCEEEeccC----CceEEEECCC
Confidence 777665432 1 11112233344322 347765421 2358888873
No 114
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.52 E-value=0.47 Score=46.33 Aligned_cols=200 Identities=14% Similarity=0.091 Sum_probs=83.1
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCc-EEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCcee
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 174 (522)
++.+++.|+.+ ..+.+||+.+.. |...... .... ..-..+.+ ++++++.|+.+. .
T Consensus 66 ~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~~----------~~~~-~~v~~~~~~~~~~~l~~~~~d~------~ 123 (377)
T 3dwl_C 66 KSNRIVTCSQD-----RNAYVYEKRPDGTWKQTLVL----------LRLN-RAATFVRWSPNEDKFAVGSGAR------V 123 (377)
T ss_dssp TTCCEEEEETT-----SSEEEC------CCCCEEEC----------CCCS-SCEEEEECCTTSSCCEEEESSS------C
T ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEe----------cccC-CceEEEEECCCCCEEEEEecCC------e
Confidence 35666777644 468888888765 4333321 0111 11222222 456666766532 3
Q ss_pred EEEEECCCCc-EEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCc----------------E
Q 009910 175 VWTFDTETEC-WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT----------------W 236 (522)
Q Consensus 175 v~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----------------W 236 (522)
+..||..+.+ |....... .+....-.+++.. ++++++.|+.+. .+.+||+.+.. -
T Consensus 124 i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 196 (377)
T 3dwl_C 124 ISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNVLLAAGCADR------KAYVLSAYVRDVDAKPEASVWGSRLPFN 196 (377)
T ss_dssp EEECCC-----CCCCEEEC-SSCCSCEEEEEECTTSSEEEEEESSS------CEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred EEEEEECCcccceeeeEee-cccCCCeEEEEEcCCCCEEEEEeCCC------EEEEEEEEecccCCCccccccccccchh
Confidence 7778877764 32222100 1111122223332 466777777653 37788875432 1
Q ss_pred EEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE--EEeeeCCCCCCCccceEEEE-ECCEEE
Q 009910 237 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVL-CGTKWY 313 (522)
Q Consensus 237 ~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~p~~r~~~~~~~-~~~~iy 313 (522)
..+. .+.....-.+++...+..+++.|+.++ .+.+||+.+..- ..+.... .....-.+++. -+++++
T Consensus 197 ~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l 266 (377)
T 3dwl_C 197 TVCA---EYPSGGWVHAVGFSPSGNALAYAGHDS-----SVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIV 266 (377)
T ss_dssp EEEE---CCCCSSSEEEEEECTTSSCEEEEETTT-----EEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEE
T ss_pred hhhh---cccCCceEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEE
Confidence 1221 111111122233333333666666543 477888766542 1111110 01111112222 377777
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
+.|+.+ .+.+|+.....|+....
T Consensus 267 ~~~~~~------~~~~~~~~~~~~~~~~~ 289 (377)
T 3dwl_C 267 AAGYNY------SPILLQGNESGWAHTRD 289 (377)
T ss_dssp EEESSS------SEEEECCCC---CCSBC
T ss_pred EEEcCC------cEEEEEeCCCceEEEee
Confidence 666432 25677777666655443
No 115
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=95.46 E-value=1.9 Score=46.51 Aligned_cols=262 Identities=11% Similarity=0.029 Sum_probs=127.0
Q ss_pred EECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCce
Q 009910 96 VIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRV 173 (522)
Q Consensus 96 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 173 (522)
..|+.+|.+-- ........+|+.+.....|+.+-..... ............+ +++.++++... .+....
T Consensus 81 ~dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~lld~~~l-------~~~~~~~~~~~~~SPDg~~la~~~~~-~G~~~~ 151 (710)
T 2xdw_A 81 KKGKRYFYFYN-TGLQNQRVLYVQDSLEGEARVFLDPNIL-------SDDGTVALRGYAFSEDGEYFAYGLSA-SGSDWV 151 (710)
T ss_dssp EETTEEEEEEE-CSSCSSCEEEEESSTTSCCEEEECGGGG-------CTTSCEEEEEEEECTTSSEEEEEEEE-TTCSCE
T ss_pred EECCEEEEEEE-cCCceEEEEEEEcCCCCCcEEEECHHHh-------ccCCCEEEEEEEECCCCCEEEEEEcC-CCCceE
Confidence 34566555432 1122234677877766677655321110 0001011112222 55555554332 223345
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCC----------CccCcEEEEEcCCCcEE--Eee
Q 009910 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKR----------RKLNDLHMFDLKSLTWL--PLH 240 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~----------~~~~~v~~yd~~t~~W~--~~~ 240 (522)
.++++|+.+++...... +.... ..++.. +++.++++...... .....++++++.+.+.. .+.
T Consensus 152 ~i~v~d~~tg~~~~~~~----~~~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL----ERVKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp EEEEEETTTTEEEEEEE----EEECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEECCCCCCCcccc----cCccc-ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 79999999998776432 11121 223332 45444444433220 12356999999887632 221
Q ss_pred cCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCC------C--cEEEeeeCCCCCCCccceEEEEECCE
Q 009910 241 CTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET------M--IWTRIKIRGFHPSPRAGCCGVLCGTK 311 (522)
Q Consensus 241 ~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~------~--~W~~~~~~~~~p~~r~~~~~~~~~~~ 311 (522)
. ....+......... +++ .+++.........++++.+|+.+ . .++.+... .... .......++.
T Consensus 227 ~--~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~---~~~~-~~~~s~dg~~ 299 (710)
T 2xdw_A 227 E--FPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN---FEGE-YDYVTNEGTV 299 (710)
T ss_dssp C--CTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS---SSSC-EEEEEEETTE
T ss_pred c--cCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC---CCcE-EEEEeccCCE
Confidence 1 11122323333343 445 34443322222256899999976 4 58777643 1111 1122224778
Q ss_pred EEEEcccCCCCCcCeEEEEECCCC---ceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKG---EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
||+.+..+. ....++.+|+.+. .|+.+.... .......+.+. +++.+++....++ ...++++++.+
T Consensus 300 l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~~~~--~~~~lv~~~~~~g--~~~l~~~~~~~ 368 (710)
T 2xdw_A 300 FTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPEH-----EKDVLEWVACV--RSNFLVLCYLHDV--KNTLQLHDLAT 368 (710)
T ss_dssp EEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCC-----SSCEEEEEEEE--TTTEEEEEEEETT--EEEEEEEETTT
T ss_pred EEEEECCCC--CCCEEEEEeCCCCCcccceeccCCC-----CCCeEEEEEEE--cCCEEEEEEEECC--EEEEEEEECCC
Confidence 888875432 2467999999875 588876321 11111222222 2345665554332 23577788744
Q ss_pred C
Q 009910 389 N 389 (522)
Q Consensus 389 ~ 389 (522)
+
T Consensus 369 g 369 (710)
T 2xdw_A 369 G 369 (710)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.41 E-value=1.8 Score=42.24 Aligned_cols=198 Identities=10% Similarity=-0.038 Sum_probs=97.1
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECC-EEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
..+|++|+.+.+-..+... +...... ....-++ .|+... .. ..++++|+.+++-..+..
T Consensus 60 ~~l~~~d~~~g~~~~lt~~----------~~~~~~~-~~~spdg~~l~~~~-~~------~~l~~~d~~~g~~~~~~~-- 119 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEG----------RGDNTFG-GFLSPDDDALFYVK-DG------RNLMRVDLATLEENVVYQ-- 119 (388)
T ss_dssp CEEEEEETTTCEEEECCCS----------SCBCSSS-CEECTTSSEEEEEE-TT------TEEEEEETTTCCEEEEEE--
T ss_pred ceEEEEeCCCCceEEeeeC----------CCCCccc-eEEcCCCCEEEEEe-CC------CeEEEEECCCCcceeeee--
Confidence 4689999998887776542 1111111 1222244 444433 21 369999999988666553
Q ss_pred CCCCCCcceEEEE--ECCEEEEE----cccCC------------CCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 193 DIPVARSGHTVVR--ASSVLILF----GGEDG------------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 193 ~~p~~r~~~~~~~--~~~~iyv~----GG~~~------------~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
.|.......... -++++++. +..-. .......++++|+.+.+-..+.. .+ .... ..
T Consensus 120 -~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~-~~~~-~~ 193 (388)
T 3pe7_A 120 -VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ---EN-QWLG-HP 193 (388)
T ss_dssp -CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---ES-SCEE-EE
T ss_pred -chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec---CC-cccc-cc
Confidence 333322212221 23333331 10000 01123679999999887666641 11 1222 23
Q ss_pred EEEC--CcEEEEEcCCC-CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE-EEEEcccCCCCCcCeEEE
Q 009910 255 ALYD--DKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 255 ~~~~--~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyi~GG~~~~~~~~~v~~ 329 (522)
.... ++ .+++.... .......+|.+|+++...+.+... .........+.. +++ |+...... ......+++
T Consensus 194 ~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~ 268 (388)
T 3pe7_A 194 IYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFWVPDGSALVYVSYLK-GSPDRFIYS 268 (388)
T ss_dssp EEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEECTTSSCEEEEEEET-TCCCEEEEE
T ss_pred EECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcccccceECCCCCEEEEEecCC-CCCcceEEE
Confidence 3333 44 33332221 112245899999987766665432 111111111222 444 54443222 212235999
Q ss_pred EECCCCceEEecc
Q 009910 330 FDILKGEWSVAIT 342 (522)
Q Consensus 330 yd~~~~~W~~~~~ 342 (522)
+|+.+.+-+.+..
T Consensus 269 ~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 269 ADPETLENRQLTS 281 (388)
T ss_dssp ECTTTCCEEEEEE
T ss_pred EecCCCceEEEEc
Confidence 9999988776654
No 117
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.40 E-value=1.3 Score=42.69 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=98.7
Q ss_pred EEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEe
Q 009910 161 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (522)
Q Consensus 161 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 239 (522)
++|.+.........+|.+|..+++++.+........+ ..++. -+++||+.+.... ...+++||+.+.+++.+
T Consensus 6 ~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p---~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~~ 78 (347)
T 3hfq_A 6 LFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNP---TYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHKL 78 (347)
T ss_dssp EEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCC---CCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEEE
T ss_pred EEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCc---ceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEEe
Confidence 4455544333445688889999988775431111111 22332 3577777653211 25689999988887766
Q ss_pred ecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcC-CCcEEEeee---CCCCCCCcc----ceEEEEE-C
Q 009910 240 HCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKI---RGFHPSPRA----GCCGVLC-G 309 (522)
Q Consensus 240 ~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~---~~~~p~~r~----~~~~~~~-~ 309 (522)
... ......-..++.. +++.+|+.+.. -+.+.+|++. ++..+.+.. .+..|.+|. -++++.. +
T Consensus 79 ~~~--~~~~~~p~~~a~spdg~~l~~~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd 151 (347)
T 3hfq_A 79 NTV--VAPGTPPAYVAVDEARQLVYSANYH-----KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD 151 (347)
T ss_dssp EEE--EEESCCCSEEEEETTTTEEEEEETT-----TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred eee--ecCCCCCEEEEECCCCCEEEEEeCC-----CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC
Confidence 421 0001111223333 45556665422 2357888874 334444432 121222221 2223332 5
Q ss_pred CEEEEEcccCCCCCcCeEEEEECC-CCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 310 TKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 310 ~~iyi~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
+++|+.+... +.+++||+. +.+...+...... ...+...+.+.. +...+|+.+... +.+.+|+++.
T Consensus 152 g~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~---~g~~p~~~~~sp-dg~~l~v~~~~~----~~v~v~~~~~ 218 (347)
T 3hfq_A 152 NRLAVIDLGS-----DKVYVYNVSDAGQLSEQSVLTME---AGFGPRHLVFSP-DGQYAFLAGELS----SQIASLKYDT 218 (347)
T ss_dssp SCEEEEETTT-----TEEEEEEECTTSCEEEEEEEECC---TTCCEEEEEECT-TSSEEEEEETTT----TEEEEEEEET
T ss_pred CcEEEEeCCC-----CEEEEEEECCCCcEEEeeeEEcC---CCCCCceEEECC-CCCEEEEEeCCC----CEEEEEEecC
Confidence 6677665433 358889987 5555544321111 111222344443 334577665432 3567777663
No 118
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.37 E-value=1.9 Score=40.77 Aligned_cols=233 Identities=9% Similarity=0.028 Sum_probs=111.3
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++.+++.|+.+ ..+.++|..+..-...-.. ...+ .......-++.+++.|+.+. .+..
T Consensus 24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~----------~~~~-v~~~~~~~~~~~l~s~s~d~------~i~v 81 (304)
T 2ynn_A 24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQV----------TETP-VRAGKFIARKNWIIVGSDDF------RIRV 81 (304)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC----------CSSC-EEEEEEEGGGTEEEEEETTS------EEEE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCceeEEeec----------cCCc-EEEEEEeCCCCEEEEECCCC------EEEE
Confidence 35566666644 4678888887653222110 0101 11122222556666776542 4888
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~ 256 (522)
||..+++-...-. . ....-.+++.. ++.+++.|+.+. .+.++|+.+..=..... . .....-.+++.
T Consensus 82 wd~~~~~~~~~~~---~-h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~--~-~h~~~v~~v~~ 148 (304)
T 2ynn_A 82 FNYNTGEKVVDFE---A-HPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNWALEQTF--E-GHEHFVMCVAF 148 (304)
T ss_dssp EETTTCCEEEEEE---C-CSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTTEEEEEE--C-CCCSCEEEEEE
T ss_pred EECCCCcEEEEEe---C-CCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCcchhhhh--c-ccCCcEEEEEE
Confidence 9988876322111 0 11111223222 456777777654 37788887652111110 0 11111122333
Q ss_pred EC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE---CCEEEEEcccCCCCCcCeEEEEEC
Q 009910 257 YD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDI 332 (522)
Q Consensus 257 ~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~~~v~~yd~ 332 (522)
.. +..+++.|+.++ .+.+||+.+..-...... ...+........ ++.+++.|+.++ .+.++|+
T Consensus 149 ~p~~~~~l~sgs~D~-----~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~D~-----~i~iWd~ 215 (304)
T 2ynn_A 149 NPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDL-----TIKIWDY 215 (304)
T ss_dssp CTTCTTEEEEEETTS-----EEEEEETTCSSCSEEEEC---CCTTCEEEEEECCSTTCCEEEEEETTS-----EEEEEET
T ss_pred CCCCCCEEEEEeCCC-----eEEEEECCCCCccceecc---CCcCcEEEEEEEEcCCCCEEEEEcCCC-----eEEEEeC
Confidence 22 323677777654 588888765421111111 111111111121 455677777654 4889999
Q ss_pred CCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 333 ~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+.+-...- .. .......+.+...+ .+++.|+.++ .|.++|+++.+
T Consensus 216 ~~~~~~~~~--~~----h~~~v~~~~~~p~~--~~l~s~s~Dg----~i~iWd~~~~~ 261 (304)
T 2ynn_A 216 QTKSCVATL--EG----HMSNVSFAVFHPTL--PIIISGSEDG----TLKIWNSSTYK 261 (304)
T ss_dssp TTTEEEEEE--EC----CSSCEEEEEECSSS--SEEEEEETTS----CEEEEETTTCC
T ss_pred CCCccceee--CC----CCCCEEEEEECCCC--CEEEEEcCCC----eEEEEECCCCc
Confidence 876533221 11 11122334443333 3667777654 58888887655
No 119
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=95.32 E-value=2 Score=43.71 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=99.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
++++|+|-|. ..|+||..+++...-.= ..+| . --++....+++|+|-| +..|+||..+.+
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w-~gi~--~-iDAA~~~~g~~YfFkG--------~~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSW-PAVG--N-CTSALRWLGRYYCFQG--------NQFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECC-TTSC--C-CSEEEEETTEEEEEET--------TEEEEECTTTCC
T ss_pred CCeEEEEecc--------cEEEEecccceeecccC-CCCC--c-cchheeeCCceEEEEC--------CEEEEEcCccCc
Confidence 6788988774 38999998886653211 1233 2 2355556799999966 346777765432
Q ss_pred ------------EEEeecCC------------CCC---CCC-cceEEEE-ECCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 236 ------------WLPLHCTG------------TGP---SPR-SNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 236 ------------W~~~~~~g------------~~p---~~r-~~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
|..++..| ..| .+. ..-+++. .++. +|+|-|. ..|++|.....
T Consensus 218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~-tYFFKg~-------~yWR~~~~~~~ 289 (460)
T 1qhu_A 218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGA-TYVFSGS-------HYWRLDTNRDG 289 (460)
T ss_dssp CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCC-EEEEETT-------EEEECTTGGGC
T ss_pred ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCe-EEEEeCC-------EEEEEecCCCC
Confidence 22211100 000 111 1223333 3455 8888763 46777765433
Q ss_pred EEEeee---CCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCC------CCCC--CCCcE
Q 009910 287 WTRIKI---RGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------SVTS--NKGFT 355 (522)
Q Consensus 287 W~~~~~---~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~------~~~~--r~~~~ 355 (522)
+..... -+.+|. .--+|...++++|+|=| +.+|+|+.... .+.+...|.+ .|.. ....-
T Consensus 290 ~~p~~Is~~WpglP~--~IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~ID 359 (460)
T 1qhu_A 290 WHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVD 359 (460)
T ss_dssp CCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCC
T ss_pred cCccchhhhccCCCC--CCcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCccc
Confidence 322111 012232 23455556899999977 45899986531 2222211111 0111 12223
Q ss_pred EEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 356 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 356 ~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
++... ...+++|+|-|. ..|.||....
T Consensus 360 AA~~~-~~~~ktyfFkG~------~ywryd~~~~ 386 (460)
T 1qhu_A 360 AAFVC-PGSSRLHIMAGR------RLWWLDLKSG 386 (460)
T ss_dssp EEECC-TTCCEEEEEETT------EEEEEEGGGG
T ss_pred EEEEe-CCCCEEEEEECC------EEEEEECCCC
Confidence 33332 234678888885 5899998743
No 120
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.31 E-value=2.6 Score=41.93 Aligned_cols=223 Identities=15% Similarity=0.173 Sum_probs=107.0
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (522)
+.|+++|..+.+...+-.. ...... -.++.+ ++..++.|+.+. .+.++|..+++-.....
T Consensus 125 ~tV~lWd~~tg~~~~~~~~----------~~~~~~-V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~~- 186 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQM----------EQPGEY-ISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT- 186 (420)
T ss_dssp TEEEEEETTTCCEEEEEEC----------CSTTCC-EEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC-
T ss_pred CEEEEEECCCCCEEEEEEe----------cCCCCc-EEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEEe-
Confidence 5789999998876554331 111111 122333 567777777643 38889998876433221
Q ss_pred CCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCC
Q 009910 192 GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 270 (522)
Q Consensus 192 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~ 270 (522)
.... ...+...++.+++.|+.+. .+..+|............+ .. ......... .+. .++.|+.++
T Consensus 187 --~h~~--~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~--h~-~~~~~~~~~~~g~-~l~s~~~D~ 252 (420)
T 4gga_A 187 --SHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSG--HS-QEVCGLRWAPDGR-HLASGGNDN 252 (420)
T ss_dssp --CCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEEC--CS-SCEEEEEECTTSS-EEEEEETTS
T ss_pred --CCCC--ceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEecc--cc-cceeeeeecCCCC-eeeeeeccc
Confidence 1112 2233445667777776543 3677776654332221101 11 111122222 344 555555443
Q ss_pred CCCCCcEEEEEcCCCc--EEEeeeCCCCCCCccce-EEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCC
Q 009910 271 SKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGC-CGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 345 (522)
Q Consensus 271 ~~~~~~v~~yd~~~~~--W~~~~~~~~~p~~r~~~-~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 345 (522)
.+.++|..+.. +..+... ....... +.+.. +..+++.||.+.+ ..|.++|+.+.+-.......
T Consensus 253 -----~v~i~~~~~~~~~~~~~~~~---~~~~~~V~~~~~~p~~~~~la~~~gs~D---~~I~iwd~~t~~~~~~~~~~- 320 (420)
T 4gga_A 253 -----LVNVWPSAPGEGGWVPLQTF---TQHQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDAH- 320 (420)
T ss_dssp -----CEEEEESSCCSSCSCCSEEE---CCCSSCEEEEEECTTCTTEEEEEECTTT---CEEEEEETTTTEEEEEEECS-
T ss_pred -----cceEEeeccccccceeeeee---cccCCceeeeeeCCCcccEEEEEeecCC---CEEEEEeCCccccceeeccc-
Confidence 46777765432 1111111 0111111 12222 4455555443322 35889999887654433211
Q ss_pred CCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 346 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 346 ~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
......... .+...+++.+|... +.|.+||..+.+
T Consensus 321 ------~~v~~~~~~-~~~~~lv~~sg~~d---~~I~iwd~~~~~ 355 (420)
T 4gga_A 321 ------SQVCSILWS-PHYKELISGHGFAQ---NQLVIWKYPTMA 355 (420)
T ss_dssp ------SCEEEEEEE-TTTTEEEEEECTTT---CCEEEEETTTCC
T ss_pred ------cceeeeeec-CCCCeEEEEEecCC---CEEEEEECCCCc
Confidence 112223333 23455666555432 358889887654
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.25 E-value=0.36 Score=50.67 Aligned_cols=193 Identities=11% Similarity=0.102 Sum_probs=96.0
Q ss_pred eEEEEECCCCcEEEeeecCCC--------CCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCC
Q 009910 174 SVWTFDTETECWSVVEAKGDI--------PVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT 244 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~--------p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 244 (522)
.+.++|..+.+-...-+...+ |.+|..+.+..- +..+|+... ..+.++++|..+.+-..+. .
T Consensus 249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~------~~g~i~vvd~~~~~~l~~~---~ 319 (543)
T 1nir_A 249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK------ETGKVLLVNYKDIDNLTVT---S 319 (543)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEECTTSSSCEEE---E
T ss_pred eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC------CCCeEEEEEecCCCcceeE---E
Confidence 478889888764332211111 222332222222 345555432 2356899998764321111 1
Q ss_pred CCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCC
Q 009910 245 GPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRK 321 (522)
Q Consensus 245 ~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~ 321 (522)
.+..+.-+..+.. +++++|+.+.. .+.+.++|.++++-...-..+..|.+-.+.. ... ++.+|+.+....
T Consensus 320 i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d- 392 (543)
T 1nir_A 320 IGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGD- 392 (543)
T ss_dssp EECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSS-
T ss_pred eccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCC-
Confidence 1122223334443 44545554322 3468999999887655444343344333322 223 367887764322
Q ss_pred CCcCeEEEEECCCC-----ceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC--CCCcEEEEEcccCC
Q 009910 322 KRHAETLIFDILKG-----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEKNE 390 (522)
Q Consensus 322 ~~~~~v~~yd~~~~-----~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~--~~~~v~~y~~~~~~ 390 (522)
+.|-++|..+. .|+.+...+... ..... +.+ +.+...||+-.-.+.+ ..+.|.+||+.+.+
T Consensus 393 ---~~V~v~d~~~~~~~~~~~~~v~~l~~~g---~~~~~-v~~-~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 393 ---GSISLIGTDPKNHPQYAWKKVAELQGQG---GGSLF-IKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp ---SEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCC-EEC-CTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ---ceEEEEEeCCCCCchhcCeEEEEEEcCC---CCceE-EEc-CCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 34788888762 387776544321 11111 222 3344566653311111 25689999998776
No 122
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.24 E-value=2.7 Score=41.77 Aligned_cols=186 Identities=10% Similarity=0.081 Sum_probs=89.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+++.|+.+ ..+.+||+.+.+-...-. ... ..-..+.+ ++..++.|+.+. .+
T Consensus 161 ~~~~l~sgs~D-----~~i~iwd~~~~~~~~~~~------------~h~-~~V~~v~~~p~~~~l~s~s~D~------~i 216 (410)
T 1vyh_C 161 SGKLLASCSAD-----MTIKLWDFQGFECIRTMH------------GHD-HNVSSVSIMPNGDHIVSASRDK------TI 216 (410)
T ss_dssp TSSEEEEEETT-----SCCCEEETTSSCEEECCC------------CCS-SCEEEEEECSSSSEEEEEETTS------EE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCceeEEEc------------CCC-CCEEEEEEeCCCCEEEEEeCCC------eE
Confidence 45677777754 356778887654322111 111 11122222 456667777542 58
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
..||..+..-...-. .... .-.++.. -++.+++.|+.++ .+.+||+.+......-. ... ..-.++
T Consensus 217 ~~wd~~~~~~~~~~~---~h~~-~v~~~~~~~~g~~l~s~s~D~------~v~vwd~~~~~~~~~~~--~h~--~~v~~~ 282 (410)
T 1vyh_C 217 KMWEVQTGYCVKTFT---GHRE-WVRMVRPNQDGTLIASCSNDQ------TVRVWVVATKECKAELR--EHR--HVVECI 282 (410)
T ss_dssp EEEETTTCCEEEEEE---CCSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEEC--CCS--SCEEEE
T ss_pred EEEECCCCcEEEEEe---CCCc-cEEEEEECCCCCEEEEEcCCC------eEEEEECCCCceeeEec--CCC--ceEEEE
Confidence 889998876432211 0111 1111222 2467777777653 37788887765433210 000 000111
Q ss_pred EEE---------------------CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEE
Q 009910 255 ALY---------------------DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 312 (522)
Q Consensus 255 ~~~---------------------~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i 312 (522)
+.. .+. +++.|+.++ .+.+||+.+..-...-. + ....-.+++.. +++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~-----~i~iwd~~~~~~~~~~~-~---h~~~v~~v~~~~~g~~ 352 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDK-----TIKMWDVSTGMCLMTLV-G---HDNWVRGVLFHSGGKF 352 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CC-EEEEEETTS-----EEEEEETTTTEEEEEEE-C---CSSCEEEEEECSSSSC
T ss_pred EEcCcccccchhhhccccccccCCCCC-EEEEEeCCC-----eEEEEECCCCceEEEEE-C---CCCcEEEEEEcCCCCE
Confidence 111 134 566666543 58899987764221111 1 11111122222 5667
Q ss_pred EEEcccCCCCCcCeEEEEECCCCc
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
++.||.++ .+.++|..+.+
T Consensus 353 l~s~s~D~-----~i~vwd~~~~~ 371 (410)
T 1vyh_C 353 ILSCADDK-----TLRVWDYKNKR 371 (410)
T ss_dssp EEEEETTT-----EEEEECCTTSC
T ss_pred EEEEeCCC-----eEEEEECCCCc
Confidence 77777654 38889886654
No 123
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.22 E-value=1.6 Score=42.60 Aligned_cols=190 Identities=9% Similarity=0.048 Sum_probs=100.3
Q ss_pred EEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 158 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 158 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
.+++.|+.+. .+.+||..+.+....... ......-.+++.. ++.+++.|+.+ ..+.++|+.+..
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~ 152 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSV 152 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCE
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCc
Confidence 5777777542 388999998876654320 0111222233333 34677777654 348889998877
Q ss_pred EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE-EE
Q 009910 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WY 313 (522)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iy 313 (522)
...+... ......-.+++...+..+++.|+.+ ..+..||+....-..+... ...-.+++.. +++ ++
T Consensus 153 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 153 IQVFAKT--DSWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEECC--CCSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEECS-----SSCEEEEEECSSCTTEE
T ss_pred eEEEecc--CCCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEeccC-----CCcEEEEEECCCCCCEE
Confidence 6666421 1111112233334433366777654 3689999865544444321 1111222222 344 77
Q ss_pred EEcccCCCCCcCeEEEEECCC----CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 314 IAGGGSRKKRHAETLIFDILK----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
+.|+.++ .+.+||+.+ ........ .......+.+... .+.+++.|+.+ ..+.+||+.+.
T Consensus 221 ~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~-~~~~l~~~~~d----~~i~iwd~~~~ 283 (383)
T 3ei3_B 221 ATSSVDA-----TVKLWDLRNIKDKNSYIAEMP-------HEKPVNAAYFNPT-DSTKLLTTDQR----NEIRVYSSYDW 283 (383)
T ss_dssp EEEETTS-----EEEEEEGGGCCSTTCEEEEEE-------CSSCEEEEEECTT-TSCEEEEEESS----SEEEEEETTBT
T ss_pred EEEeCCC-----EEEEEeCCCCCcccceEEEec-------CCCceEEEEEcCC-CCCEEEEEcCC----CcEEEEECCCC
Confidence 7777654 488999876 33322211 1112333444320 23356666654 36899998766
Q ss_pred C
Q 009910 390 E 390 (522)
Q Consensus 390 ~ 390 (522)
+
T Consensus 284 ~ 284 (383)
T 3ei3_B 284 S 284 (383)
T ss_dssp T
T ss_pred c
Confidence 5
No 124
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.20 E-value=0.77 Score=48.92 Aligned_cols=154 Identities=15% Similarity=-0.016 Sum_probs=82.1
Q ss_pred ceeEEEEECCC------CcEEEee-ecCCCCCCCcceEEEEECCEEEEEcccCCCCC--ccCcEEEEEcC-CC---cEEE
Q 009910 172 RVSVWTFDTET------ECWSVVE-AKGDIPVARSGHTVVRASSVLILFGGEDGKRR--KLNDLHMFDLK-SL---TWLP 238 (522)
Q Consensus 172 ~~~v~~yd~~t------~~W~~~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~yd~~-t~---~W~~ 238 (522)
..+++++|+.+ .+...+. . -+ .........-+++.+++...+.... ...+++++|+. +. +...
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~---~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDD---AH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCS---CS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEec---CC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 46799999988 6665543 2 01 1111112223455555544332211 12579999998 56 4444
Q ss_pred eecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCC---CCCcc-ceEEEEE-CCEE
Q 009910 239 LHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH---PSPRA-GCCGVLC-GTKW 312 (522)
Q Consensus 239 ~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---p~~r~-~~~~~~~-~~~i 312 (522)
+.. .. .......+.. +++ +|+.+..++ ...+|++|++++.++.+...... |.-.. ....+.. ++++
T Consensus 236 l~~---~~-~~~~~~~~~spdg~-l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 236 LLG---GP-EEAIAQAEWAPDGS-LIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp EEE---ET-TBCEEEEEECTTSC-EEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred eCC---CC-CceEcceEECCCCe-EEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE
Confidence 431 11 1112223333 455 776665432 24799999988888887542110 10000 1123333 6777
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceEEec
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
++.+.. ....+|.+|+.+...+.+.
T Consensus 308 ~~~~~~----~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 308 AVVHGK----GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp EEEEBS----SSCEEEEEETTTTEEEECC
T ss_pred EEEEEc----CccEEEEEECCCCcEEEec
Confidence 776654 2367899999888776654
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.45 Score=52.05 Aligned_cols=196 Identities=12% Similarity=0.106 Sum_probs=100.9
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcce-EEEE-EC--CEEEEEcccCCCCCccCcEEEEEc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH-TVVR-AS--SVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
++..++.||.+. .+.+||..+.++..+.. +......- +++. .+ +.+++.|+.++ .+.+||+
T Consensus 20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~ 84 (753)
T 3jro_A 20 YGKRLATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 84 (753)
T ss_dssp SSCCEEEEETTT------EEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEE
T ss_pred CCCeEEEEECCC------cEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEEC
Confidence 455666776542 47788887777776653 22111222 2222 22 67777777654 3889999
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEEC---CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE
Q 009910 232 KSLTWLPLHCTGTGPSPRSNHVAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (522)
Q Consensus 232 ~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~ 308 (522)
.+.+|..+... ......-.+++... +. +++.|+.++ .+.+||+.+..-.........+. .-.+++..
T Consensus 85 ~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~-~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~ 154 (753)
T 3jro_A 85 ENGRWSQIAVH--AVHSASVNSVQWAPHEYGP-LLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAI--GVNSASWA 154 (753)
T ss_dssp ETTEEEEEEEE--CCCSSCEEEEEECCGGGCS-EEEEEETTS-----EEEEEECCSSSCCCCEEEECCSS--CEEEEEEC
T ss_pred CCCcccccccc--cCCCCCeEEEEECCCCCCC-EEEEEeCCC-----cEEEEEeecCCCcceeEeecCCC--ceEEEEec
Confidence 99888776521 11111222333333 45 677776543 58888887652111111000011 11112221
Q ss_pred --------------CCEEEEEcccCCCCCcCeEEEEECCCC--ceEEeccCCCCCCCCCCCcEEEEEeeCC-ccEEEEEc
Q 009910 309 --------------GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVAFG 371 (522)
Q Consensus 309 --------------~~~iyi~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~l~v~G 371 (522)
++.+++.|+.++. |.+||+.+. .+..+..... .......+.+...+ .+.+++.|
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNL-----VKIWKYNSDAQTYVLESTLEG----HSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSC-----EEEEEEETTTTEEEEEEEECC----CSSCEEEEEECCCCSSSEEEEEE
T ss_pred CcccccccccccCCCCCEEEEEECCCe-----EEEEeccCCcccceeeeeecC----CCCcEEEEEeccCCCCCCEEEEE
Confidence 2567777776654 788887554 3444332221 11122333443221 04577777
Q ss_pred CCCCCCCCcEEEEEcccC
Q 009910 372 GIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 372 G~~~~~~~~v~~y~~~~~ 389 (522)
|.++ .|.+||+.+.
T Consensus 226 s~Dg----~I~iwd~~~~ 239 (753)
T 3jro_A 226 SQDR----TCIIWTQDNE 239 (753)
T ss_dssp ESSS----CEEEEEESSS
T ss_pred ecCC----EEEEecCCCC
Confidence 7654 5888888775
No 126
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.07 E-value=0.63 Score=50.34 Aligned_cols=63 Identities=8% Similarity=-0.028 Sum_probs=34.0
Q ss_pred cEEEEEcCC-CcEEEeeeCCCCCCCcc-ceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEec
Q 009910 276 DLYSLDFET-MIWTRIKIRGFHPSPRA-GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 276 ~v~~yd~~~-~~W~~~~~~~~~p~~r~-~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
.++++|+.+ ..-..+... .+.... ...+. -+++.++++..+......+++++|+.+.+...+.
T Consensus 264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEEEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 788899887 765544321 011111 11222 3444344433322234467999999998877654
No 127
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.06 E-value=0.74 Score=45.04 Aligned_cols=204 Identities=10% Similarity=0.034 Sum_probs=100.2
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCE-EEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 249 (522)
...++.+|+.+++...+.. . .....+....- ++. |++.. ..........++++|+.+.++..+. . ..+.
T Consensus 167 ~~~l~~~d~~~g~~~~~~~---~-~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~---~-~~~~ 237 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ---D-TAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVRKIK---E-HAEG 237 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE---E-SSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCEESS---C-CCTT
T ss_pred cceEEEEECCCCcEEeecc---C-CcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCceeEee---c-cCCC
Confidence 4579999999988776653 1 11122222222 344 44443 2221112357999999888877764 2 1111
Q ss_pred -cceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCC------
Q 009910 250 -SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR------ 320 (522)
Q Consensus 250 -~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~------ 320 (522)
.....+.. +++.|++ ...........++++|+.++..+.+... +. .. .+..- +++++++.+...
T Consensus 238 ~~~~~~~~spdg~~l~~-~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAY-VSYFKGQTDRVIYKANPETLENEEVMVM---PP--CS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp EEEEEEEECTTSSCEEE-EEEETTTCCEEEEEECTTTCCEEEEEEC---CS--EE-EEEECSSSSEEEEEECCC------
T ss_pred ccccceEECCCCCEEEE-EecCCCCccceEEEEECCCCCeEEeeeC---CC--CC-CCccCCCCceEEEecCCcceeecc
Confidence 11122233 3443333 3222111123499999998887777543 21 11 22223 666666654321
Q ss_pred -----CCCcCeEEEEECCCCceEEeccCCCCC----CCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 321 -----KKRHAETLIFDILKGEWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 321 -----~~~~~~v~~yd~~~~~W~~~~~~p~~~----~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
......++++|+.+.+.+.+...+... ...........+..++ ..|+......+ ...++.+++.+.++
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~s~~~~--~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPND-DGVLFTSDFEG--VPAIYIADVPESYK 387 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTS-SEEEEEECTTS--SCEEEEEECCTTCC
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCC-CeEEEEecCCC--CceEEEEEEccccc
Confidence 112367999999988877665432210 0000001112233223 34544443322 34688888887765
Q ss_pred ccc
Q 009910 392 SMG 394 (522)
Q Consensus 392 ~~~ 394 (522)
+..
T Consensus 388 ~~~ 390 (396)
T 3c5m_A 388 HLE 390 (396)
T ss_dssp ---
T ss_pred ccc
Confidence 553
No 128
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.01 E-value=2.4 Score=39.97 Aligned_cols=239 Identities=15% Similarity=0.032 Sum_probs=111.3
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccC---CCCC--C
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKT---DSGS--D 171 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~---~~~~--~ 171 (522)
+.+|+.+.. .+.++++|+.+.+-...-.... + ......-+.++.. ++.||+..... .... .
T Consensus 46 ~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 46 RIAYATVNK-----SESLVKIDLVTGETLGRIDLST--P-----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp SEEEEEETT-----TTEEEEEETTTCCEEEEEECCB--T-----TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCC--c-----ccccccccceEECCCCCEEEEEeccccccccccccc
Confidence 467777642 2568999998876433221100 0 0000001122222 34677764210 0000 1
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 249 (522)
...+++||+.+.+....-. .+ ...+.++.. ++ .||+.+ +.++++|+.+.+-......+..+.+.
T Consensus 114 ~~~i~v~d~~~~~~~~~~~---~~--~~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~ 179 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFE---AP--RQITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLVEDKPIQSWEAET 179 (337)
T ss_dssp CCEEEEEETTTTEEEEEEE---CC--SSCCCEEECTTSSCEEEES---------SSEEEEETTTTEEEEEECSTTTTTTT
T ss_pred CceEEEEECCCCcEEEEEe---CC--CCcceeEECCCCCEEEEeC---------CeEEEEECCCCcEeeeeeccccCCCc
Confidence 3569999999887554332 11 112233332 34 466651 45999999887654332111211221
Q ss_pred cceEEEEECCcEEEEEcCCCCC------------------CCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-C-
Q 009910 250 SNHVAALYDDKNLLIFGGSSKS------------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G- 309 (522)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~------------------~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~- 309 (522)
...-+++.+|+.+..... .....++++|+.+.+-..+... +......+++.. +
T Consensus 180 ----~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg 252 (337)
T 1pby_B 180 ----YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAK 252 (337)
T ss_dssp ----BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTS
T ss_pred ----eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC---CCCCceeeEEECCCC
Confidence 111222223322211100 0011588999988766533322 222222233332 3
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 310 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 310 ~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
..+|+. .+.+++||+.+.+-......+ .. ...+.+.. +...||+. +. .+.|.+||+++.
T Consensus 253 ~~l~~~--------~~~v~~~d~~~~~~~~~~~~~------~~-~~~~~~s~-dg~~l~~~-~~----~~~i~v~d~~~~ 311 (337)
T 1pby_B 253 TRAFGA--------YNVLESFDLEKNASIKRVPLP------HS-YYSVNVST-DGSTVWLG-GA----LGDLAAYDAETL 311 (337)
T ss_dssp SEEEEE--------ESEEEEEETTTTEEEEEEECS------SC-CCEEEECT-TSCEEEEE-SB----SSEEEEEETTTC
T ss_pred CEEEEe--------CCeEEEEECCCCcCcceecCC------Cc-eeeEEECC-CCCEEEEE-cC----CCcEEEEECcCC
Confidence 355554 156999999887644332211 11 12233432 33456664 32 347999998877
Q ss_pred Cc
Q 009910 390 ES 391 (522)
Q Consensus 390 ~w 391 (522)
+-
T Consensus 312 ~~ 313 (337)
T 1pby_B 312 EK 313 (337)
T ss_dssp CE
T ss_pred cE
Confidence 53
No 129
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.91 E-value=1.8 Score=41.43 Aligned_cols=198 Identities=10% Similarity=0.020 Sum_probs=94.3
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++++++.|+.+. .+.+||..+.+-...-. .. ...-.+++.. +++.++.|+.+ ..+.+||+.+.
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 106 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNGERLGTLD---GH-TGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSNG 106 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTCCEEEEEC---CC-SSCEEEEEECTTSSEEEEEETT------TEEEEEETTTC
T ss_pred CCCEEEEEeCCC------EEEEEeCCCchhhhhhh---hc-CCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCC
Confidence 455666666432 38888988776433221 11 1111222222 46667777654 34889999887
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc----EEEeeeCCC----CCCCccceEEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGF----HPSPRAGCCGV 306 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~~~----~p~~r~~~~~~ 306 (522)
+-...- . ....-.+++...+...++.++.+.......+..||+.+.. +........ .........++
T Consensus 107 ~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 107 QCVATW---K--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp CEEEEE---E--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred cEEEEe---e--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 654443 1 1111223333333335555554322223467778765432 221111000 00000022222
Q ss_pred EE--CCEEEEEcccCCCCCcCeEEEEECCC-CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 009910 307 LC--GTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (522)
Q Consensus 307 ~~--~~~iyi~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (522)
.+ +++.+++|+.++ .+.+||+.+ ..-..... . .......+.+..+ +.+++.|+.++ .|.+
T Consensus 182 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~--~----~~~~v~~~~~~~~--~~~l~~~~~d~----~i~v 244 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDG-----KISKYDVSNNYEYVDSID--L----HEKSISDMQFSPD--LTYFITSSRDT----NSFL 244 (369)
T ss_dssp EECGGGCEEEEEETTS-----EEEEEETTTTTEEEEEEE--C----CSSCEEEEEECTT--SSEEEEEETTS----EEEE
T ss_pred EEcCCCCEEEEEcCCC-----EEEEEECCCCcEeEEEEe--c----CCCceeEEEECCC--CCEEEEecCCc----eEEE
Confidence 22 556677776553 489999987 33222211 1 1112333344322 33556665543 5888
Q ss_pred EEcccCCc
Q 009910 384 LSIEKNES 391 (522)
Q Consensus 384 y~~~~~~w 391 (522)
||+.+.+.
T Consensus 245 ~d~~~~~~ 252 (369)
T 3zwl_B 245 VDVSTLQV 252 (369)
T ss_dssp EETTTCCE
T ss_pred EECCCCce
Confidence 88877653
No 130
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.90 E-value=2.6 Score=39.85 Aligned_cols=224 Identities=8% Similarity=0.003 Sum_probs=108.9
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
+.||+.+-.. +.+++|++. ...+..... ...-.+++.. ++++|+.... ...+.+
T Consensus 57 ~~l~~~d~~~-----~~i~~~~~~-g~~~~~~~~-------------~~~~~gl~~d~dG~l~v~~~~------~~~v~~ 111 (305)
T 3dr2_A 57 RTLVWSDLVG-----RRVLGWRED-GTVDVLLDA-------------TAFTNGNAVDAQQRLVHCEHG------RRAITR 111 (305)
T ss_dssp TEEEEEETTT-----TEEEEEETT-SCEEEEEES-------------CSCEEEEEECTTSCEEEEETT------TTEEEE
T ss_pred CEEEEEECCC-----CEEEEEeCC-CCEEEEeCC-------------CCccceeeECCCCCEEEEECC------CCEEEE
Confidence 4577776322 568899884 343333220 1112333333 5677776321 124889
Q ss_pred EECCCCcEEEeeecC-CCCCCCcceEEEE-ECCEEEEE----cccCC-------CCCccCcEEEEEcCCCcEEEeecCCC
Q 009910 178 FDTETECWSVVEAKG-DIPVARSGHTVVR-ASSVLILF----GGEDG-------KRRKLNDLHMFDLKSLTWLPLHCTGT 244 (522)
Q Consensus 178 yd~~t~~W~~~~~~~-~~p~~r~~~~~~~-~~~~iyv~----GG~~~-------~~~~~~~v~~yd~~t~~W~~~~~~g~ 244 (522)
||+. ++.+.+.... ..+..+. ..+++ -+++||+. |-... .......+++||+++.+++.+. .
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~-~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~ 186 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSP-NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---D 186 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCC-CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---E
T ss_pred ECCC-CCEEEEEeccCCCccCCC-CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---c
Confidence 9986 6666554211 1111111 22333 35788884 43210 0112357999999888877663 1
Q ss_pred CCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCC
Q 009910 245 GPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKK 322 (522)
Q Consensus 245 ~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~ 322 (522)
+..+ ...+.. +++.+|+..........+.+++|++..+...........+... -.+++. -++.||+..+
T Consensus 187 ~~~p---~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~-pdgi~~d~~G~lwv~~~----- 257 (305)
T 3dr2_A 187 LDHP---NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL-PDGFCVDRGGWLWSSSG----- 257 (305)
T ss_dssp ESSE---EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC-CCSEEECTTSCEEECCS-----
T ss_pred CCCC---cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC-CCeEEECCCCCEEEecC-----
Confidence 1111 233333 3445777643211111357999998765432221110011111 112222 2567777642
Q ss_pred CcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcC
Q 009910 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG 372 (522)
..|++||++...-..+.. + . ....+++. .+.+.||+...
T Consensus 258 --~gv~~~~~~g~~~~~~~~-~----~---~~~~~~f~-~d~~~L~it~~ 296 (305)
T 3dr2_A 258 --TGVCVFDSDGQLLGHIPT-P----G---TASNCTFD-QAQQRLFITGG 296 (305)
T ss_dssp --SEEEEECTTSCEEEEEEC-S----S---CCCEEEEC-TTSCEEEEEET
T ss_pred --CcEEEECCCCCEEEEEEC-C----C---ceeEEEEe-CCCCEEEEEcC
Confidence 249999997766555542 1 1 13344454 34456776543
No 131
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.89 E-value=4.7 Score=42.69 Aligned_cols=199 Identities=13% Similarity=-0.029 Sum_probs=104.7
Q ss_pred cccEEEEEcCC------CcEEEcc-cccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCC--CceeEEEEECC-C
Q 009910 113 LDDVQVLNFDR------FSWTAAS-SKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS--DRVSVWTFDTE-T 182 (522)
Q Consensus 113 ~~~v~~yd~~~------~~W~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~yd~~-t 182 (522)
..+++++|+.+ .....+. .. ..........-+++.+++........ ...+++++|+. +
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDA------------HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSC------------SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred eeEEEEEECCCCccccCCceeEEEecC------------CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 36799999988 5655554 21 11111112222454444444332111 23579999999 5
Q ss_pred C---cEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCC-CCCCCc---ceEE
Q 009910 183 E---CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT-GPSPRS---NHVA 254 (522)
Q Consensus 183 ~---~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~-~p~~r~---~~~~ 254 (522)
+ +...+... . .......+. -++++|+.+..++ ...++++|+.+.++..+..... .-.+.. ....
T Consensus 228 g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 228 GRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp SCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSE
T ss_pred CcccccEEeCCC---C-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceE
Confidence 6 44444321 0 111222222 2567777665432 2469999998888988752110 000100 1123
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEE-EEECCEEEEEcccCCCCCcCeEEEEECC
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG-VLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
+...++.+++.+.. -...+|.+|+.++..+.+... .. ..... ..-++.+++..+... ...++|.+|+.
T Consensus 300 ~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~~~----~~-~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~ 368 (662)
T 3azo_A 300 APLANGLIAVVHGK----GAAVLGILDPESGELVDAAGP----WT-EWAATLTVSGTRAVGVAASPR--TAYEVVELDTV 368 (662)
T ss_dssp EECTTSCEEEEEBS----SSCEEEEEETTTTEEEECCSS----CC-EEEEEEEEETTEEEEEEEETT--EEEEEEEEETT
T ss_pred eEeCCCEEEEEEEc----CccEEEEEECCCCcEEEecCC----CC-eEEEEEecCCCEEEEEEcCCC--CCCEEEEEECC
Confidence 34434436655543 245789999988877666431 11 11222 334677776654322 23568999999
Q ss_pred CCceEEecc
Q 009910 334 KGEWSVAIT 342 (522)
Q Consensus 334 ~~~W~~~~~ 342 (522)
+.+.+.+..
T Consensus 369 ~g~~~~l~~ 377 (662)
T 3azo_A 369 TGRARTIGA 377 (662)
T ss_dssp TCCEEEEES
T ss_pred CCceEEeec
Confidence 988887753
No 132
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.89 E-value=2.7 Score=39.81 Aligned_cols=236 Identities=12% Similarity=0.060 Sum_probs=109.7
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++.+++.|+.+ ..+..++............ .............+..++.|+.+. .+..
T Consensus 97 dg~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~s~s~d~------~~~~ 154 (340)
T 4aow_A 97 DGQFALSGSWD-----GTLRLWDLTTGTTTRRFVG-----------HTKDVLSVAFSSDNRQIVSGSRDK------TIKL 154 (340)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-----------CSSCEEEEEECTTSSCEEEEETTS------CEEE
T ss_pred CCCEEEEEccc-----ccceEEeecccceeeeecC-----------CCCceeEEEEeecCccceeecCCC------eEEE
Confidence 45566666644 3567777777655444331 111111112222455566666532 3667
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (522)
+|.....-..... .........+.+ .+.+++.||.+. .+.+||+.+.+..... ... ...-.+
T Consensus 155 ~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d~------~i~i~d~~~~~~~~~~---~~h-~~~v~~ 220 (340)
T 4aow_A 155 WNTLGVCKYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWDK------LVKVWNLANCKLKTNH---IGH-TGYLNT 220 (340)
T ss_dssp ECTTSCEEEEECS----SSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTTEEEEEE---CCC-SSCEEE
T ss_pred EEeCCCceEEEEe----ccccCcccceEEccCCCCcEEEEEcCCC------EEEEEECCCCceeeEe---cCC-CCcEEE
Confidence 7776554333221 111111112221 235666666543 3788999877654432 111 111223
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECC
Q 009910 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
++...+..+++.|+.++ .+.+||+.+..-...... ...-.+++...+..++.++.++ .+.+||+.
T Consensus 221 ~~~s~~~~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d~-----~i~iwd~~ 285 (340)
T 4aow_A 221 VTVSPDGSLCASGGKDG-----QAMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATGP-----SIKIWDLE 285 (340)
T ss_dssp EEECTTSSEEEEEETTC-----EEEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEETT-----EEEEEETT
T ss_pred EEECCCCCEEEEEeCCC-----eEEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCCC-----EEEEEECC
Confidence 33333333677776653 588899876543322221 1112223333444556666543 48889987
Q ss_pred CCceEEeccCCCCC---CCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 334 KGEWSVAITSPSSS---VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 334 ~~~W~~~~~~p~~~---~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+..-......+... .........+.+..++ .+++.||.++ .|.+||+++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~Dg----~v~iW~~~tGt 339 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADG--QTLFAGYTDN----LVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEECCC-------CCCCCEEEEEECTTS--SEEEEEETTS----CEEEEEEEC--
T ss_pred CCeEEEeccccceeeeccCCCCCEEEEEECCCC--CEEEEEeCCC----EEEEEeCCCcC
Confidence 76533211111000 0111122333343323 3566777654 58899988764
No 133
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.88 E-value=4.6 Score=42.45 Aligned_cols=124 Identities=10% Similarity=0.155 Sum_probs=67.8
Q ss_pred EEEECCEEEEEcccCCCCCCceeEEEEEC-CCCc--EEEeeecCC--CCCC---CcceEEEEECCEEEEEcccCCCCCcc
Q 009910 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVA---RSGHTVVRASSVLILFGGEDGKRRKL 223 (522)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~~~--~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~ 223 (522)
-++.++.||+.... ...++.+|. .+++ |+.-..... .+.. ....+.++.+++||+... -
T Consensus 58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------d 124 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------N 124 (571)
T ss_dssp CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred cEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------C
Confidence 34569999998652 124999999 7765 886432110 0000 112234567889988632 2
Q ss_pred CcEEEEEcCCC--cEEEeecCCCCCCC-CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEee
Q 009910 224 NDLHMFDLKSL--TWLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIK 291 (522)
Q Consensus 224 ~~v~~yd~~t~--~W~~~~~~g~~p~~-r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 291 (522)
..++.+|.++. .|+.-.. ..+.. ....+.++.++. +|+-.+.........++.||++++ .|+.-.
T Consensus 125 g~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp SEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 45899999876 4876421 11101 111222345554 665432111112357999999765 477543
No 134
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.81 E-value=3.1 Score=40.18 Aligned_cols=115 Identities=9% Similarity=0.075 Sum_probs=56.2
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CC-EEEEEcccCCCCCcCeEEEEEC--
Q 009910 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GT-KWYIAGGGSRKKRHAETLIFDI-- 332 (522)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~iyi~GG~~~~~~~~~v~~yd~-- 332 (522)
+++.+|+.+.. .+.+.+||+.++.++.+......+........+.+ ++ .||+..... .+.+.+|++
T Consensus 221 dg~~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~----~~~i~v~~~~~ 291 (361)
T 3scy_A 221 DGKFAYLINEI-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK----ADGVAIFKVDE 291 (361)
T ss_dssp TSSEEEEEETT-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS----SCEEEEEEECT
T ss_pred CCCEEEEEcCC-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC----CCEEEEEEEcC
Confidence 44557776532 24688999888877666543222332222233333 44 466544320 134666665
Q ss_pred CCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEE--EcccCCc
Q 009910 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL--SIEKNES 391 (522)
Q Consensus 333 ~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y--~~~~~~w 391 (522)
.+.+++.+...+. . .....+.+.. +..+||+.+... +.+.+| |+++.+-
T Consensus 292 ~~g~~~~~~~~~~-g----~~~~~~~~sp-dg~~l~~~~~~~----~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 292 TNGTLTKVGYQLT-G----IHPRNFIITP-NGKYLLVACRDT----NVIQIFERDQATGLL 342 (361)
T ss_dssp TTCCEEEEEEEEC-S----SCCCEEEECT-TSCEEEEEETTT----TEEEEEEECTTTCCE
T ss_pred CCCcEEEeeEecC-C----CCCceEEECC-CCCEEEEEECCC----CCEEEEEEECCCCcE
Confidence 5677776654332 1 1112334443 334566554322 346665 4445543
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.81 E-value=3.3 Score=43.24 Aligned_cols=236 Identities=11% Similarity=0.104 Sum_probs=115.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+|+.+... +.+.++|..+.+-...-.. .. .-|.++.. +..+|+.+. + +.|
T Consensus 148 ~~~~~vs~~~d-----~~V~v~D~~t~~~~~~i~~------------g~-~~~~v~~spdg~~l~v~~~-d------~~V 202 (543)
T 1nir_A 148 PNLFSVTLRDA-----GQIALVDGDSKKIVKVIDT------------GY-AVHISRMSASGRYLLVIGR-D------ARI 202 (543)
T ss_dssp GGEEEEEEGGG-----TEEEEEETTTCCEEEEEEC------------ST-TEEEEEECTTSCEEEEEET-T------SEE
T ss_pred CCEEEEEEcCC-----CeEEEEECCCceEEEEEec------------Cc-ccceEEECCCCCEEEEECC-C------CeE
Confidence 57788876533 5788899988754332221 01 13444333 356666543 1 469
Q ss_pred EEEEC--CCCcEEEeeecCCCCCCCcceEEEEE-----CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEe-ecCCC---
Q 009910 176 WTFDT--ETECWSVVEAKGDIPVARSGHTVVRA-----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL-HCTGT--- 244 (522)
Q Consensus 176 ~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~g~--- 244 (522)
.+||+ .+.+-... ++....-..++.. +++.++++... .+.+.++|..+.+-... ...+.
T Consensus 203 ~v~D~~~~t~~~~~~-----i~~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 203 DMIDLWAKEPTKVAE-----IKIGIEARSVESSKFKGYEDRYTIAGAYW-----PPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp EEEETTSSSCEEEEE-----EECCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEEEEEETTTCCEEEEEECCEECSS
T ss_pred EEEECcCCCCcEEEE-----EecCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeEEEEeccccccceeecccCcccC
Confidence 99999 66553221 2222222333332 45444444332 24578889887654332 21110
Q ss_pred ----CCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE-EEEEccc
Q 009910 245 ----GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGG 318 (522)
Q Consensus 245 ----~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyi~GG~ 318 (522)
.|.+|....+...++..+|+.... .+.++.+|..+..-..+... +..+.-+..+.. +++ +|+.+..
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~~ 344 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAANN 344 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEGG
T ss_pred ccccccCCceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEe---ccCcCccCceECCCCCEEEEEecC
Confidence 122333322223335545554422 35799999876432121111 122233333333 444 5554432
Q ss_pred CCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 319 SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 319 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
+ +.|.++|+.+.+-...... ...|.+.. ++... +.+.+.+|+.+.... +.|-++|..+
T Consensus 345 ~-----~~v~v~D~~tg~l~~~i~~-g~~ph~g~--g~~~~-~p~~g~~~~s~~~~d---~~V~v~d~~~ 402 (543)
T 1nir_A 345 S-----NKVAVIDSKDRRLSALVDV-GKTPHPGR--GANFV-HPKYGPVWSTSHLGD---GSISLIGTDP 402 (543)
T ss_dssp G-----TEEEEEETTTTEEEEEEEC-SSSBCCTT--CEEEE-ETTTEEEEEEEBSSS---SEEEEEECCT
T ss_pred C-----CeEEEEECCCCeEEEeecc-CCCCCCCC--CcccC-CCCCccEEEeccCCC---ceEEEEEeCC
Confidence 2 4588999998875543321 12222222 22222 333356787765332 3588888876
No 136
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.79 E-value=3.2 Score=40.27 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=76.4
Q ss_pred CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCC
Q 009910 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFET 284 (522)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~ 284 (522)
+..++.|+.+ ..+.++|+.+.+-...- ...... -.+.... ++. +++.|+.++ .+..||+.+
T Consensus 166 ~~~l~t~s~D------~~v~lwd~~~~~~~~~~---~~h~~~-v~~~~~~~~~~g~-~l~sgs~Dg-----~v~~wd~~~ 229 (354)
T 2pbi_B 166 DMQILTASGD------GTCALWDVESGQLLQSF---HGHGAD-VLCLDLAPSETGN-TFVSGGCDK-----KAMVWDMRS 229 (354)
T ss_dssp SSEEEEEETT------SEEEEEETTTCCEEEEE---ECCSSC-EEEEEECCCSSCC-EEEEEETTS-----CEEEEETTT
T ss_pred CCEEEEEeCC------CcEEEEeCCCCeEEEEE---cCCCCC-eEEEEEEeCCCCC-EEEEEeCCC-----eEEEEECCC
Confidence 4455555543 34788899887644321 111111 1112221 234 677777654 489999988
Q ss_pred CcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeC
Q 009910 285 MIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHK 362 (522)
Q Consensus 285 ~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~ 362 (522)
.+....-.. .. ....++.+ ++..++.|+.++. +.+||+.+..-...-. .. ........+.+..+
T Consensus 230 ~~~~~~~~~----h~-~~v~~v~~~p~~~~l~s~s~D~~-----v~lwd~~~~~~~~~~~--~~--~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 230 GQCVQAFET----HE-SDVNSVRYYPSGDAFASGSDDAT-----CRLYDLRADREVAIYS--KE--SIIFGASSVDFSLS 295 (354)
T ss_dssp CCEEEEECC----CS-SCEEEEEECTTSSEEEEEETTSC-----EEEEETTTTEEEEEEC--CT--TCCSCEEEEEECTT
T ss_pred CcEEEEecC----CC-CCeEEEEEeCCCCEEEEEeCCCe-----EEEEECCCCcEEEEEc--CC--CcccceeEEEEeCC
Confidence 765433211 11 11222333 5677788876654 8899988765332221 11 11223344444433
Q ss_pred CccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 363 EKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 363 ~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+ .+++.|+.++ .|.+||+.+.+
T Consensus 296 g--~~l~~g~~d~----~i~vwd~~~~~ 317 (354)
T 2pbi_B 296 G--RLLFAGYNDY----TINVWDVLKGS 317 (354)
T ss_dssp S--SEEEEEETTS----CEEEEETTTCS
T ss_pred C--CEEEEEECCC----cEEEEECCCCc
Confidence 3 3666666543 58889886654
No 137
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.76 E-value=2.9 Score=39.94 Aligned_cols=184 Identities=12% Similarity=0.100 Sum_probs=89.3
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
+.+++.|+.+ ..+.+||..+.......... .....-.+++.. ++..++.|+.+ ..+..
T Consensus 54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~~~d------g~v~i 112 (368)
T 3mmy_A 54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQ----------MHTGPVLDVCWSDDGSKVFTASCD------KTAKM 112 (368)
T ss_dssp SEEEEEEETT-----SEEEEEEECTTSCEEEEEEE----------ECSSCEEEEEECTTSSEEEEEETT------SEEEE
T ss_pred ceEEEEECCC-----CcEEEEEcCCCCceeEEEec----------cccCCEEEEEECcCCCEEEEEcCC------CcEEE
Confidence 3777777754 45788888863322211100 000011122222 45566666653 25889
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEE---ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
||..+.+...... .. ..-.++.. -++.+++.|+.++ .+.+||+.+.+-...- ..+ ....+.
T Consensus 113 wd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~---~~~--~~~~~~ 176 (368)
T 3mmy_A 113 WDLSSNQAIQIAQ---HD--APVKTIHWIKAPNYSCVMTGSWDK------TLKFWDTRSSNPMMVL---QLP--ERCYCA 176 (368)
T ss_dssp EETTTTEEEEEEE---CS--SCEEEEEEEECSSCEEEEEEETTS------EEEEECSSCSSCSEEE---ECS--SCEEEE
T ss_pred EEcCCCCceeecc---cc--CceEEEEEEeCCCCCEEEEccCCC------cEEEEECCCCcEEEEE---ecC--CCceEE
Confidence 9999887655432 11 11222332 2567788877643 4888998775422221 111 122223
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEeeeCCCCCCCccceEEE-EECC----EEEEEcccCCCCCcCeE
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGV-LCGT----KWYIAGGGSRKKRHAET 327 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~p~~r~~~~~~-~~~~----~iyi~GG~~~~~~~~~v 327 (522)
....+. +++ ++.+ +.+..||..... +..+.. +......... .... ..++.|+.++ .+
T Consensus 177 ~~~~~~-~~~-~~~~-----~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-----~i 240 (368)
T 3mmy_A 177 DVIYPM-AVV-ATAE-----RGLIVYQLENQPSEFRRIES----PLKHQHRCVAIFKDKQNKPTGFALGSIEG-----RV 240 (368)
T ss_dssp EEETTE-EEE-EEGG-----GCEEEEECSSSCEEEEECCC----SCSSCEEEEEEEECTTSCEEEEEEEETTS-----EE
T ss_pred EecCCe-eEE-EeCC-----CcEEEEEeccccchhhhccc----cccCCCceEEEcccCCCCCCeEEEecCCC-----cE
Confidence 333333 443 3322 357888876543 222221 1222222222 2222 3366666554 37
Q ss_pred EEEECCCC
Q 009910 328 LIFDILKG 335 (522)
Q Consensus 328 ~~yd~~~~ 335 (522)
.+||....
T Consensus 241 ~i~~~~~~ 248 (368)
T 3mmy_A 241 AIHYINPP 248 (368)
T ss_dssp EEEESSCS
T ss_pred EEEecCCC
Confidence 88888765
No 138
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.75 E-value=1.4 Score=43.23 Aligned_cols=196 Identities=12% Similarity=0.119 Sum_probs=96.8
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCc------EEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCCccCcEEE
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHM 228 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~ 228 (522)
+.+++.|+.+. .+..||..+.+ -..... ........-.+++.. + +.+++.|+.++ .+.+
T Consensus 126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~i 192 (416)
T 2pm9_A 126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSSN------FASI 192 (416)
T ss_dssp TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEE
T ss_pred CCEEEEEcCCC------eEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEE
Confidence 56777777542 38888888765 111100 000111112233332 2 56777776543 4899
Q ss_pred EEcCCCcEEEeecCCCCCC-----CCcceEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCC-CCcc
Q 009910 229 FDLKSLTWLPLHCTGTGPS-----PRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-SPRA 301 (522)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~-----~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p-~~r~ 301 (522)
||+.+.+-...- ..+. ...-.+++...+ ..+++.|+.++. ...+.+||+.+..- .+... . ....
T Consensus 193 wd~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~---~~~~~~ 263 (416)
T 2pm9_A 193 WDLKAKKEVIHL---SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTL---NQGHQK 263 (416)
T ss_dssp EETTTTEEEEEE---CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCC---CSCCSS
T ss_pred EECCCCCcceEE---eccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEe---ecCccC
Confidence 999887654432 2221 112223333332 236666655431 12588889876421 11111 1 1111
Q ss_pred ceEEEEE---CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCC
Q 009910 302 GCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (522)
Q Consensus 302 ~~~~~~~---~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~ 378 (522)
....+.+ ++.+++.|+.++ .+.+||+.+.+-.... ... . .....+.+...+ ..+++.|+.++
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~~~--~~~---~-~~v~~~~~s~~~-~~~l~s~~~d~--- 328 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDN-----TVLLWNPESAEQLSQF--PAR---G-NWCFKTKFAPEA-PDLFACASFDN--- 328 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSS-----EEEEECSSSCCEEEEE--ECS---S-SCCCCEEECTTC-TTEEEECCSSS---
T ss_pred ceeEEEeCCCCCCeEEEEeCCC-----CEEEeeCCCCccceee--cCC---C-CceEEEEECCCC-CCEEEEEecCC---
Confidence 1222232 567788887654 4899998876543322 111 1 112223333222 24777777653
Q ss_pred CcEEEEEcccCC
Q 009910 379 NQVEVLSIEKNE 390 (522)
Q Consensus 379 ~~v~~y~~~~~~ 390 (522)
.|.+|++...+
T Consensus 329 -~i~iw~~~~~~ 339 (416)
T 2pm9_A 329 -KIEVQTLQNLT 339 (416)
T ss_dssp -EEEEEESCCCC
T ss_pred -cEEEEEccCCC
Confidence 58899987765
No 139
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.75 E-value=1.6 Score=43.17 Aligned_cols=199 Identities=13% Similarity=0.113 Sum_probs=98.2
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEE-----eeecCCCC-CCCcceEEEEE-CC-EEEEEcccCCCCCccCcEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-----VEAKGDIP-VARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLH 227 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-----~~~~~~~p-~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~ 227 (522)
++.+++.|+.+. .+.+||..++.... +.. +. ....-.+++.. ++ .+++.|+.++ .+.
T Consensus 93 ~~~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~ 157 (402)
T 2aq5_A 93 NDNVIASGSEDC------TVMVWEIPDGGLVLPLREPVIT---LEGHTKRVGIVAWHPTAQNVLLSAGCDN------VIL 157 (402)
T ss_dssp CTTEEEEEETTS------EEEEEECCTTCCSSCBCSCSEE---EECCSSCEEEEEECSSBTTEEEEEETTS------CEE
T ss_pred CCCEEEEEeCCC------eEEEEEccCCCCccccCCceEE---ecCCCCeEEEEEECcCCCCEEEEEcCCC------EEE
Confidence 566777777542 48888888764311 110 00 11111222222 23 5777777543 488
Q ss_pred EEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE
Q 009910 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (522)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~ 307 (522)
+||+.+.+....-. .......-.+++...+..+++.|+.+ ..+.+||+.+..-...-..+ ....+. ..++.
T Consensus 158 iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~-~~~~~~-~~~~~ 228 (402)
T 2aq5_A 158 VWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRP-HEGTRP-VHAVF 228 (402)
T ss_dssp EEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECS-SCSSSC-CEEEE
T ss_pred EEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccC-CCCCcc-eEEEE
Confidence 99998876544320 01112222233333333366666654 36999999876544332111 111111 22333
Q ss_pred E-CCEEEEEcccCCCCCcCeEEEEECCCCce-EEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEE
Q 009910 308 C-GTKWYIAGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 385 (522)
Q Consensus 308 ~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~ 385 (522)
. ++++++.|.... ....+.+||+.+..- ......+ .......+.+. .+...|++.|+.++ .|.+|+
T Consensus 229 ~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s-~~~~~l~~~g~~dg----~i~i~d 296 (402)
T 2aq5_A 229 VSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQELD-----TSSGVLLPFFD-PDTNIVYLCGKGDS----SIRYFE 296 (402)
T ss_dssp CSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEECC-----CCSSCEEEEEE-TTTTEEEEEETTCS----CEEEEE
T ss_pred cCCCcEEEEeccCC--CCceEEEEcCccccCCceEEecc-----CCCceeEEEEc-CCCCEEEEEEcCCC----eEEEEE
Confidence 2 677777762111 124589999877542 1111111 11123333443 33456666775433 588888
Q ss_pred cccCC
Q 009910 386 IEKNE 390 (522)
Q Consensus 386 ~~~~~ 390 (522)
+.+.+
T Consensus 297 ~~~~~ 301 (402)
T 2aq5_A 297 ITSEA 301 (402)
T ss_dssp ECSST
T ss_pred ecCCC
Confidence 87765
No 140
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.71 E-value=5.7 Score=42.78 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=68.0
Q ss_pred EEEECCEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecCCC--CC---CCcceEEEEECCEEEEEcccCCCCCccC
Q 009910 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI--PV---ARSGHTVVRASSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--p~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 224 (522)
-++.++.||+.... ..++.+|..|++ |+.-...... +. .....+.++.+++||+... -.
T Consensus 66 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg 131 (689)
T 1yiq_A 66 PIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DG 131 (689)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CC
Confidence 34679999997653 249999998876 8764321000 00 0112234567888888531 24
Q ss_pred cEEEEEcCCCc--EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEe
Q 009910 225 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 290 (522)
Q Consensus 225 ~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 290 (522)
.++.+|.++.+ |+.-.............+.++.++. +|+-.+.........++.||.++++ |+.-
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 58999998765 8765410000101112233445555 6553221111234579999998765 8764
No 141
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.65 E-value=2.8 Score=38.89 Aligned_cols=188 Identities=8% Similarity=-0.009 Sum_probs=99.5
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.+|+.... .+.+++||+. .++...... .....-+.++.. ++.+|+.... ...++
T Consensus 72 ~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~------~~~i~ 128 (300)
T 2qc5_A 72 LGDIWFTENG-----ANKIGKLSKK-GGFTEYPLP-----------QPDSGPYGITEGLNGDIWFTQLN------GDRIG 128 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECS-----------STTCCEEEEEECSTTCEEEEETT------TTEEE
T ss_pred CCCEEEEecC-----CCeEEEECCC-CCeEEecCC-----------CCCCCCccceECCCCCEEEEccC------CCeEE
Confidence 3668886431 2468899988 666544321 111122344444 5788876432 12489
Q ss_pred EEECCCCcEEEeeecCCCCC-CCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc-eE
Q 009910 177 TFDTETECWSVVEAKGDIPV-ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN-HV 253 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~-~~ 253 (522)
+||+. ++..... ++. ...-+.++.. +++||+.... ...+++||+ +.+...... +..... ..
T Consensus 129 ~~~~~-g~~~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~----~~~~~~~~~ 192 (300)
T 2qc5_A 129 KLTAD-GTIYEYD----LPNKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPL----PTNAAAPVG 192 (300)
T ss_dssp EECTT-SCEEEEE----CSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEEC----SSTTCCEEE
T ss_pred EECCC-CCEEEcc----CCCCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeC----CCCCCCcce
Confidence 99988 6665543 221 1222333332 4678875421 245899998 667766532 211112 23
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEE
Q 009910 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd 331 (522)
++.-.+..+|+.... .+.+++||+ ++.+...... ........+.+ +++||+..... +.+.+||
T Consensus 193 i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~ 257 (300)
T 2qc5_A 193 ITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDIP----TPNARPHAITAGKNSEIWFTEWGA-----NQIGRIT 257 (300)
T ss_dssp EEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECS----STTCCEEEEEECSTTCEEEEETTT-----TEEEEEC
T ss_pred EEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEECC----CCCCCceEEEECCCCCEEEeccCC-----CeEEEEC
Confidence 333323337775422 235999998 5666655321 11111222333 56788875322 4589999
Q ss_pred CCCCceEEe
Q 009910 332 ILKGEWSVA 340 (522)
Q Consensus 332 ~~~~~W~~~ 340 (522)
+ +.+....
T Consensus 258 ~-~g~~~~~ 265 (300)
T 2qc5_A 258 N-DNTIQEY 265 (300)
T ss_dssp T-TSCEEEE
T ss_pred C-CCcEEEE
Confidence 8 4555544
No 142
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.63 E-value=3.7 Score=43.46 Aligned_cols=132 Identities=15% Similarity=0.100 Sum_probs=70.6
Q ss_pred eEEEEECCEEEEEcCcCCCCCcccEEEEEc-CCC--cEEEcccccccCCCCCCCCCCCccceEEEE--ECCE----EEEE
Q 009910 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNF-DRF--SWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKK----VLLV 162 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~-~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~----iyv~ 162 (522)
.+-++.++.||+.... .+.++.+|. .+. .|+.-........ +.........+.+. .+++ ||+.
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~---~~~~~~~~~~g~av~p~~g~~~~rV~v~ 127 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAAR---AVACCDLVNRGLAYWPGDGKTPALILKT 127 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGG---GGCSSCSCCCCCEEECCCSSSCCEEEEE
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCcccc---ccccccccccceEEEecCCcceeEEEEE
Confidence 4456779999998752 257899999 664 6987554210000 00000001122334 4666 8775
Q ss_pred cccCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEE
Q 009910 163 GGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLP 238 (522)
Q Consensus 163 GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 238 (522)
.. ...++.+|..|++ |+.-..... +......+-++.++.||+-.+.... ..-..++.||.++.+ |+.
T Consensus 128 t~-------dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 128 QL-------DGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp CT-------TSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEE
T ss_pred cC-------CCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEE
Confidence 32 1259999999876 875431000 0001122334568888764321110 123569999998765 876
Q ss_pred ee
Q 009910 239 LH 240 (522)
Q Consensus 239 ~~ 240 (522)
-.
T Consensus 199 ~~ 200 (599)
T 1w6s_A 199 YA 200 (599)
T ss_dssp ES
T ss_pred cC
Confidence 53
No 143
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.63 E-value=3 Score=39.20 Aligned_cols=196 Identities=13% Similarity=0.159 Sum_probs=90.7
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEEC---CEEEEEcccCCCCCccCcEEEEEcC
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRAS---SVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~---~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
+.+++.|+.+. .+.++|+.+++|..+.. +.. ...-.+++... +.+++.|+.++ .+.+||+.
T Consensus 67 g~~l~s~s~D~------~v~iWd~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~g~~l~s~s~d~------~v~~wd~~ 131 (297)
T 2pm7_B 67 GTILASCSYDG------KVMIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPMLLVASSDG------KVSVVEFK 131 (297)
T ss_dssp CSEEEEEETTT------EEEEEEBSSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEEBC
T ss_pred CCEEEEEcCCC------EEEEEEcCCCceEEEEE---eecCCCceeEEEeCcCCCCcEEEEEECCC------cEEEEEec
Confidence 56777777642 47888888877754432 111 11111222221 45667776543 36777776
Q ss_pred CCc-EEEeecCCCCCCCCcceEEEEE--------------CCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCC
Q 009910 233 SLT-WLPLHCTGTGPSPRSNHVAALY--------------DDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF 295 (522)
Q Consensus 233 t~~-W~~~~~~g~~p~~r~~~~~~~~--------------~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~ 295 (522)
+.. +...... .. ...-.+++.. +++ +++.|+.++ .+.+||..+. .|..+...
T Consensus 132 ~~~~~~~~~~~-~h--~~~v~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~-----~v~lwd~~~~~~~~~~~~~l-- 200 (297)
T 2pm7_B 132 ENGTTSPIIID-AH--AIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTL-- 200 (297)
T ss_dssp SSSCBCCEEEE-CC--SSCEEEEEECCCC------------CC-EEEEEETTS-----CEEEEEEETTTTEEEEEEEE--
T ss_pred CCCceeeeeee-cc--cCccceEeecCCcccccccCCCCCCcc-eEEEEcCCC-----cEEEEEEcCCCceEEEEEEe--
Confidence 542 2111000 00 0001111111 123 677776654 3777776543 35544433
Q ss_pred CCCCccceEEEEE--C---CEEEEEcccCCCCCcCeEEEEECCC--CceEEeccCCCCCCCCCCCcEEEEEeeCCccEEE
Q 009910 296 HPSPRAGCCGVLC--G---TKWYIAGGGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLV 368 (522)
Q Consensus 296 ~p~~r~~~~~~~~--~---~~iyi~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~ 368 (522)
........++.+ + +.+++.|+.++. +.++|+.+ ..|......... . ......+.+... +.++
T Consensus 201 -~~H~~~V~~v~~sp~~~~~~~las~s~D~~-----v~iWd~~~~~~~~~~~~~~~~~--~-~~~v~~~~~s~~--g~~l 269 (297)
T 2pm7_B 201 -EGHSDWVRDVAWSPTVLLRSYMASVSQDRT-----CIIWTQDNEQGPWKKTLLKEEK--F-PDVLWRASWSLS--GNVL 269 (297)
T ss_dssp -CCCSSCEEEEEECCCCSSSEEEEEEETTSC-----EEEEEESSTTSCCEEEESSSSC--C-SSCEEEEEECSS--SCCE
T ss_pred -cCCCCceEEEEECCCCCCceEEEEEECCCc-----EEEEEeCCCCCccceeeeeccc--C-CCcEEEEEECCC--CCEE
Confidence 111111222332 2 377777776654 77777765 346542210000 1 111223334333 3356
Q ss_pred EEcCCCCCCCCcEEEEEcc-cCCccc
Q 009910 369 AFGGIKKEPSNQVEVLSIE-KNESSM 393 (522)
Q Consensus 369 v~GG~~~~~~~~v~~y~~~-~~~w~~ 393 (522)
+.||.++ .|.+++.. ..+|..
T Consensus 270 as~~~D~----~v~lw~~~~~g~w~~ 291 (297)
T 2pm7_B 270 ALSGGDN----KVTLWKENLEGKWEP 291 (297)
T ss_dssp EEEETTS----CEEEEEECTTSCEEE
T ss_pred EEEcCCC----cEEEEEECCCCcEEe
Confidence 6776643 47777765 335544
No 144
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=4.3 Score=40.74 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=56.9
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEE-EEC---CEEEEEcccCCCCCccCcEEEEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVV-RAS---SVLILFGGEDGKRRKLNDLHMFD 230 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~-~~~---~~iyv~GG~~~~~~~~~~v~~yd 230 (522)
++..++.|+.+ ..++.++..+........ ..+. ....-.+++ .-+ +++++.|+.+ ..+.+||
T Consensus 160 ~~~~l~~~~~~------g~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd 226 (450)
T 2vdu_B 160 DDTTVIIADKF------GDVYSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISH 226 (450)
T ss_dssp TSSEEEEEETT------SEEEEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEE
T ss_pred CCCEEEEEeCC------CcEEEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEE
Confidence 45566666542 248888887654321000 0011 011112222 235 7788888764 3488899
Q ss_pred cCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE
Q 009910 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (522)
Q Consensus 231 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (522)
+.+.+....-..+ ..... .+++..+++ +++.|+.+ ..+.+||+.+.....
T Consensus 227 ~~~~~~~~~~~~~--h~~~v-~~~~~sd~~-~l~s~~~d-----~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 227 YPQCFIVDKWLFG--HKHFV-SSICCGKDY-LLLSAGGD-----DKIFAWDWKTGKNLS 276 (450)
T ss_dssp ESCTTCEEEECCC--CSSCE-EEEEECSTT-EEEEEESS-----SEEEEEETTTCCEEE
T ss_pred CCCCceeeeeecC--CCCce-EEEEECCCC-EEEEEeCC-----CeEEEEECCCCcEee
Confidence 8876644331111 11111 122222566 66667644 368999988776443
No 145
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.56 E-value=1.9 Score=42.92 Aligned_cols=148 Identities=9% Similarity=0.061 Sum_probs=78.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.+++.|+.+. .+.+||..+.+....-. ... ..-.+++. -++.+++.||.+.. +.+||+.+.
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l~---~h~-~~V~~v~~~~~~~~l~sgs~D~~------i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTLK---GHT-DSVQDISFDHSGKLLASCSADMT------IKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEEC---CCS-SCEEEEEECTTSSEEEEEETTSC------CCEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEe---ccC-CcEEEEEEcCCCCEEEEEeCCCe------EEEEeCCCC
Confidence 356777777643 38889988876433211 111 11122222 24677888876544 667888765
Q ss_pred cEEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCE
Q 009910 235 TWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK 311 (522)
Q Consensus 235 ~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~ 311 (522)
+-... +.. ...-.+++...+...++.|+.++ .+..||+.++.-...-.. . .....++.. ++.
T Consensus 183 ~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D~-----~i~~wd~~~~~~~~~~~~----h-~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 183 ECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTGYCVKTFTG----H-REWVRMVRPNQDGT 247 (410)
T ss_dssp CEEEC-----CCCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTCCEEEEEEC----C-SSCEEEEEECTTSS
T ss_pred ceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEeC----C-CccEEEEEECCCCC
Confidence 43221 111 11122233333333667776543 588999887654322111 1 111122222 567
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
+++.|+.++. +.++|+.+.....
T Consensus 248 ~l~s~s~D~~-----v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 248 LIASCSNDQT-----VRVWVVATKECKA 270 (410)
T ss_dssp EEEEEETTSC-----EEEEETTTCCEEE
T ss_pred EEEEEcCCCe-----EEEEECCCCceee
Confidence 7788876654 8889987766443
No 146
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.53 E-value=3 Score=38.81 Aligned_cols=227 Identities=10% Similarity=0.024 Sum_probs=103.9
Q ss_pred ECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCceeE
Q 009910 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 97 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v 175 (522)
.++..++.|+.+ ..+.+||+.+..-...... ... .-.+++. -++.+++.|+.+. .+
T Consensus 27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~-----------~~~-~v~~~~~~~~~~~l~~~~~dg------~i 83 (313)
T 3odt_A 27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYT-----------GQG-FLNSVCYDSEKELLLFGGKDT------MI 83 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEEESSSEEEEEEEE-----------CSS-CEEEEEEETTTTEEEEEETTS------CE
T ss_pred cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeec-----------CCc-cEEEEEECCCCCEEEEecCCC------eE
Confidence 345556666543 4688889877654333221 011 1122222 2566777776542 26
Q ss_pred EEEECCCCc-EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 176 WTFDTETEC-WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 176 ~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
..++..... ...+.. +......-.....++.+++.|+.++ .+.+||......... ....+ -.++
T Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~l~~~~~d~------~i~~~d~~~~~~~~~----~~~~~--v~~~ 148 (313)
T 3odt_A 84 NGVPLFATSGEDPLYT---LIGHQGNVCSLSFQDGVVISGSWDK------TAKVWKEGSLVYNLQ----AHNAS--VWDA 148 (313)
T ss_dssp EEEETTCCTTSCC-CE---ECCCSSCEEEEEEETTEEEEEETTS------EEEEEETTEEEEEEE----CCSSC--EEEE
T ss_pred EEEEeeecCCCCcccc---hhhcccCEEEEEecCCEEEEEeCCC------CEEEEcCCcEEEecc----cCCCc--eeEE
Confidence 666665432 111111 1111111222233555666666543 377788322222211 11111 1122
Q ss_pred EEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCCCcCeEEEEE
Q 009910 255 ALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 255 ~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~v~~yd 331 (522)
+.. ++. +++.|+.++ .+..||.... -..+.. +....-.+++. -++. ++.|+.++ .+.+||
T Consensus 149 ~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~-~~~~~~----~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d 211 (313)
T 3odt_A 149 KVVSFSEN-KFLTASADK-----TIKLWQNDKV-IKTFSG----IHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVD 211 (313)
T ss_dssp EEEETTTT-EEEEEETTS-----CEEEEETTEE-EEEECS----SCSSCEEEEEEEETTE-EEEEETTS-----EEEEEE
T ss_pred EEccCCCC-EEEEEECCC-----CEEEEecCce-EEEEec----cCcccEEEEEEcCCCe-EEEccCCC-----eEEEEE
Confidence 222 456 566666543 4888883321 112211 11112222333 3667 66776554 489999
Q ss_pred CCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 332 ~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
+.+.+-...-. . .......+.+..++ . ++.|+.++ .|.+||+.+.+.
T Consensus 212 ~~~~~~~~~~~--~----~~~~i~~~~~~~~~--~-l~~~~~dg----~v~iwd~~~~~~ 258 (313)
T 3odt_A 212 MHTGDVLRTYE--G----HESFVYCIKLLPNG--D-IVSCGEDR----TVRIWSKENGSL 258 (313)
T ss_dssp TTTCCEEEEEE--C----CSSCEEEEEECTTS--C-EEEEETTS----EEEEECTTTCCE
T ss_pred CCchhhhhhhh--c----CCceEEEEEEecCC--C-EEEEecCC----EEEEEECCCCce
Confidence 98765333221 1 11122333443222 3 55666543 588888877653
No 147
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.53 E-value=3.9 Score=40.05 Aligned_cols=196 Identities=12% Similarity=0.142 Sum_probs=96.4
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcce--EEEE--ECCEEEEEcccCCCCCccCcEEEEEcC
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH--TVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~--~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
+..++.|+.+. .+..||+.+++-...-. ...+...... ++.. .++.+++.|+.+.. +.+||+.
T Consensus 170 ~~~l~s~s~D~------~i~~wd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~------v~~wd~~ 236 (380)
T 3iz6_a 170 ETRLITGSGDQ------TCVLWDVTTGQRISIFG-SEFPSGHTADVLSLSINSLNANMFISGSCDTT------VRLWDLR 236 (380)
T ss_dssp SSCEEEECTTS------CEEEECTTTCCEEEEEC-CCSSSSCCSCEEEEEECSSSCCEEEEEETTSC------EEEEETT
T ss_pred CCEEEEECCCC------cEEEEEcCCCcEEEEee-cccCCCCccCeEEEEeecCCCCEEEEEECCCe------EEEEECC
Confidence 34455555432 38889998876543321 0122221111 1222 25678888876643 7888886
Q ss_pred CC--cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCC--CCCcc-ceEEEE
Q 009910 233 SL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH--PSPRA-GCCGVL 307 (522)
Q Consensus 233 t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--p~~r~-~~~~~~ 307 (522)
.. .-..+. . ... .-.+++...+...++.|+.++ .+.+||+.++.-...-..... ..... -.+++.
T Consensus 237 ~~~~~~~~~~---~-h~~-~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 237 ITSRAVRTYH---G-HEG-DINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TTCCCCEEEC---C-CSS-CCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCCcceEEEC---C-cCC-CeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 32 222221 0 111 112333444433777777654 488999987654333221000 00011 112222
Q ss_pred -ECCEEEEEcccCCCCCcCeEEEEECCCCceEE-eccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEE
Q 009910 308 -CGTKWYIAGGGSRKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 385 (522)
Q Consensus 308 -~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~ 385 (522)
.++++++.|+.++. +.+||..+.+-.. +..... .-......+.+..++ ..++.|+.++ .|.+++
T Consensus 307 s~~g~~l~~g~~dg~-----i~vwd~~~~~~~~~~~~~~~---~h~~~v~~l~~s~dg--~~l~sgs~D~----~i~iW~ 372 (380)
T 3iz6_a 307 SISGRLLFAGYSNGD-----CYVWDTLLAEMVLNLGTLQN---SHEGRISCLGLSSDG--SALCTGSWDK----NLKIWA 372 (380)
T ss_dssp CSSSSEEEEECTTSC-----EEEEETTTCCEEEEECCSCS---SCCCCCCEEEECSSS--SEEEEECTTS----CEEEEE
T ss_pred CCCCCEEEEEECCCC-----EEEEECCCCceEEEEecccC---CCCCceEEEEECCCC--CEEEEeeCCC----CEEEEe
Confidence 26777777776544 9999987765432 211100 111122334444333 3677888754 477777
Q ss_pred cccC
Q 009910 386 IEKN 389 (522)
Q Consensus 386 ~~~~ 389 (522)
+...
T Consensus 373 ~~~~ 376 (380)
T 3iz6_a 373 FSGH 376 (380)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6544
No 148
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.50 E-value=0.66 Score=45.40 Aligned_cols=201 Identities=8% Similarity=-0.020 Sum_probs=97.6
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCE-EEEEcccCCCCCCceeEEEEECCCCcEEEeeec
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (522)
..++++|+.+.+...+... .....+....- ++. |++... .........+|.+|+.+.++..+..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~------------~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~- 233 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD------------TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE- 233 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE------------SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-
T ss_pred ceEEEEECCCCcEEeeccC------------CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-
Confidence 4688999988777665431 11122222222 343 444432 1111122469999998888776642
Q ss_pred CCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCC
Q 009910 192 GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 269 (522)
Q Consensus 192 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~ 269 (522)
..+ .......+. -+++.+++...... .....++++|+.+.+...+. ..+. .. .+..- +++ ++++.+..
T Consensus 234 -~~~-~~~~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~---~~~~--~~-~~~s~~dg~-~l~~~~~~ 303 (396)
T 3c5m_A 234 -HAE-GESCTHEFWIPDGSAMAYVSYFKG-QTDRVIYKANPETLENEEVM---VMPP--CS-HLMSNFDGS-LMVGDGCD 303 (396)
T ss_dssp -CCT-TEEEEEEEECTTSSCEEEEEEETT-TCCEEEEEECTTTCCEEEEE---ECCS--EE-EEEECSSSS-EEEEEECC
T ss_pred -cCC-CccccceEECCCCCEEEEEecCCC-CccceEEEEECCCCCeEEee---eCCC--CC-CCccCCCCc-eEEEecCC
Confidence 111 111111222 24543444333222 11234999999988877765 2331 11 22222 556 55554321
Q ss_pred C-----------CCCCCcEEEEEcCCCcEEEeeeCCCCC-----C-C-ccceEEEEECC-EEEEEcccCCCCCcCeEEEE
Q 009910 270 K-----------SKTLNDLYSLDFETMIWTRIKIRGFHP-----S-P-RAGCCGVLCGT-KWYIAGGGSRKKRHAETLIF 330 (522)
Q Consensus 270 ~-----------~~~~~~v~~yd~~~~~W~~~~~~~~~p-----~-~-r~~~~~~~~~~-~iyi~GG~~~~~~~~~v~~y 330 (522)
. ......++++|+.++..+.+....... . . .....+..-++ .|++.....+ ...+|.+
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~---~~~l~~~ 380 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG---VPAIYIA 380 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS---SCEEEEE
T ss_pred cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC---CceEEEE
Confidence 0 012357999999888777665531100 0 0 01111111244 5555443322 3569999
Q ss_pred ECCCCceEEec
Q 009910 331 DILKGEWSVAI 341 (522)
Q Consensus 331 d~~~~~W~~~~ 341 (522)
|+.+..++.+.
T Consensus 381 ~~~~~~~~~~~ 391 (396)
T 3c5m_A 381 DVPESYKHLEH 391 (396)
T ss_dssp ECCTTCC----
T ss_pred EEccccccccc
Confidence 99888877644
No 149
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=94.50 E-value=4.6 Score=43.46 Aligned_cols=211 Identities=9% Similarity=-0.011 Sum_probs=106.4
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCC-------CC
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS-------GS 170 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-------~~ 170 (522)
+++.++++-........+++++|+.+.+....... ..+....+-..++.||+.- .... ..
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~------------~~k~~~~~WsDg~~l~y~~-~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK------------DVKFSGISWLGNEGFFYSS-YDKPDGSELSART 205 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE------------EEESCCCEEETTTEEEEEE-SSCCC-------C
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC------------CceeccEEEeCCCEEEEEE-ecCcccccccccC
Confidence 45545543222112235789999999887554321 0111122223334555442 2211 02
Q ss_pred CceeEEEEECCCCcE--EEeeecCCCCC--CCcceEEE-EECCEEEEEcccCCCCCccCcEEEEEcCCC--cEEEeecCC
Q 009910 171 DRVSVWTFDTETECW--SVVEAKGDIPV--ARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTG 243 (522)
Q Consensus 171 ~~~~v~~yd~~t~~W--~~~~~~~~~p~--~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g 243 (522)
....||++++.+..= ..+.. .+. +.....+. .-+++.+++.-.... ..++++++|+.+. .|..+..
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~~-- 278 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFG---AIPAQHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQG-- 278 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEEC--
T ss_pred CCcEEEEEECCCCcccceEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEeC--
Confidence 345699998877652 22221 221 22222222 234544433322211 2368999998765 7888752
Q ss_pred CCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC---CcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCC
Q 009910 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET---MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (522)
Q Consensus 244 ~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~ 320 (522)
+.. ........+++.+|+....+. ....|+.+|+.+ ..|+.+.... .. .. .....++.|++..-.++
T Consensus 279 --~~~-~~~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~--~~--~~-~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 279 --DLD-ADVSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPER--QQ--VL-TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp --SSS-SCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCC--SS--CE-EEEEETTEEEEEEEETT
T ss_pred --CCC-ceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEecCC--CC--EE-EEEEECCEEEEEEEECC
Confidence 111 112223344555888765432 345799999876 3588876531 11 11 44445677766543322
Q ss_pred CCCcCeEEEEECCCCceEEec
Q 009910 321 KKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 321 ~~~~~~v~~yd~~~~~W~~~~ 341 (522)
...++++|+.+.....+.
T Consensus 349 ---~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 349 ---TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp ---EEEEEEECTTSCEEEEEC
T ss_pred ---eeEEEEEECCCCeeEEee
Confidence 246899998876655544
No 150
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.48 E-value=3 Score=38.61 Aligned_cols=224 Identities=9% Similarity=-0.012 Sum_probs=116.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.||+.... .+.+.+||+. .+....... .....-++++.. ++.+|+.... ...++
T Consensus 30 ~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~------~~~v~ 86 (300)
T 2qc5_A 30 DGKVWFTQHK-----ANKISSLDQS-GRIKEFEVP-----------TPDAKVMCLIVSSLGDIWFTENG------ANKIG 86 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECS-----------STTCCEEEEEECTTSCEEEEETT------TTEEE
T ss_pred CCCEEEEcCC-----CCeEEEECCC-CceEEEECC-----------CCCCcceeEEECCCCCEEEEecC------CCeEE
Confidence 4678886531 2568899988 666554321 011122344443 4678886432 13489
Q ss_pred EEECCCCcEEEeeecCCCCC-CCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEE
Q 009910 177 TFDTETECWSVVEAKGDIPV-ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~ 254 (522)
+||+. +++..... +. ...-+.++.. ++.+|+.... .+.+.+||+. .+........ ....-...
T Consensus 87 ~~d~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i 151 (300)
T 2qc5_A 87 KLSKK-GGFTEYPL----PQPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGSYPAFI 151 (300)
T ss_dssp EECTT-SCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEE
T ss_pred EECCC-CCeEEecC----CCCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCCCceeE
Confidence 99998 77765542 21 1223344443 5788886422 2458899987 6665543111 11122233
Q ss_pred EEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccc-eEEEEE-CCEEEEEcccCCCCCcCeEEEEEC
Q 009910 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDI 332 (522)
Q Consensus 255 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~-~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~ 332 (522)
+.-.+..+|+.... .+.+++||+ +++...+.. +..... .+.+.. ++.+|+..... ..+++||+
T Consensus 152 ~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~ 216 (300)
T 2qc5_A 152 TLGSDNALWFTENQ-----NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIMG-----NKIGRITT 216 (300)
T ss_dssp EECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETTT-----TEEEEECT
T ss_pred EECCCCCEEEEecC-----CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccCC-----CEEEEEcC
Confidence 33333337775422 246999998 666666532 111112 223332 56788865322 35899998
Q ss_pred CCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 009910 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (522)
Q Consensus 333 ~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~ 386 (522)
+.++..... +. .......+++..+ +.||+.... .+.|.+|++
T Consensus 217 -~g~~~~~~~-~~----~~~~~~~i~~d~~--g~l~v~~~~----~~~i~~~~~ 258 (300)
T 2qc5_A 217 -TGEISEYDI-PT----PNARPHAITAGKN--SEIWFTEWG----ANQIGRITN 258 (300)
T ss_dssp -TCCEEEEEC-SS----TTCCEEEEEECST--TCEEEEETT----TTEEEEECT
T ss_pred -CCcEEEEEC-CC----CCCCceEEEECCC--CCEEEeccC----CCeEEEECC
Confidence 566655432 11 1112233444323 347765422 235777776
No 151
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.43 E-value=4.6 Score=41.92 Aligned_cols=198 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCC------cEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE------CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHM 228 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~------~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~ 228 (522)
++++++.|+.+. .+.+||..+. ....+.... .... .-.+++. -+++.++.+|.+.. ....++.
T Consensus 77 ~~~~l~s~~~dg------~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~s~~~~~l~~~~~~~~--~~~~v~~ 146 (615)
T 1pgu_A 77 GSQYLCSGDESG------KVIVWGWTFDKESNSVEVNVKSEFQ-VLAG-PISDISWDFEGRRLCVVGEGRD--NFGVFIS 146 (615)
T ss_dssp TCCEEEEEETTS------EEEEEEEEEEGGGTEEEEEEEEEEE-CCSS-CEEEEEECTTSSEEEEEECCSS--CSEEEEE
T ss_pred CCCEEEEecCCC------EEEEEeCCCCcccccccccccchhh-cccc-cEEEEEEeCCCCEEEEeccCCC--CccEEEE
Confidence 556777777532 4777777544 333322100 1111 1122222 24566666665433 2345677
Q ss_pred EEcCCCcEEEeecCCCCCCCCcceEEEEECCc-EEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCc-cceEEE
Q 009910 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR-AGCCGV 306 (522)
Q Consensus 229 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r-~~~~~~ 306 (522)
+|. .+-...- ... ...-.+++...+. .+++.|+.+ ..+.+||..+..-.. ......... .-.+++
T Consensus 147 ~d~--~~~~~~~---~~~-~~~v~~~~~~~~~~~~l~~~~~d-----~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 147 WDS--GNSLGEV---SGH-SQRINACHLKQSRPMRSMTVGDD-----GSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVE 213 (615)
T ss_dssp TTT--CCEEEEC---CSC-SSCEEEEEECSSSSCEEEEEETT-----TEEEEEETTTBEEEE--EECSSSCTTCCEEEEE
T ss_pred EEC--CCcceee---ecC-CccEEEEEECCCCCcEEEEEeCC-----CcEEEEeCCCcceee--eecccCCCCceEEEEE
Confidence 763 2211111 111 1112223333332 256666544 358899977654332 221111100 122233
Q ss_pred EE-C-CEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEE
Q 009910 307 LC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (522)
Q Consensus 307 ~~-~-~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y 384 (522)
.. + ++.++.|+.++. +.+||+.+.+.......+. .........+.+. + +.+++.|+.++ .+.+|
T Consensus 214 ~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~-~--~~~l~~~~~d~----~i~~w 279 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRK-----ISCFDGKSGEFLKYIEDDQ--EPVQGGIFALSWL-D--SQKFATVGADA----TIRVW 279 (615)
T ss_dssp ECSTTCCEEEEEETTCC-----EEEEETTTCCEEEECCBTT--BCCCSCEEEEEES-S--SSEEEEEETTS----EEEEE
T ss_pred ECCCCCCEEEEEeCCCe-----EEEEECCCCCEeEEecccc--cccCCceEEEEEc-C--CCEEEEEcCCC----cEEEE
Confidence 32 5 677788876644 9999998776544220000 0011122333333 2 33566666542 57888
Q ss_pred EcccCC
Q 009910 385 SIEKNE 390 (522)
Q Consensus 385 ~~~~~~ 390 (522)
|+.+.+
T Consensus 280 d~~~~~ 285 (615)
T 1pgu_A 280 DVTTSK 285 (615)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 877654
No 152
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.41 E-value=1.4 Score=42.11 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=57.4
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE---CCEEEEEcccCCCCCCcee
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 174 (522)
+++.++.|+.+ ..+.+||+.+.....+.... .....-.+++.. ++.+++.|+.+. .
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~----------gH~~~V~~v~~~~~~~~~~l~s~s~D~------~ 82 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLR----------GHEGPVWQVAWAHPMYGNILASCSYDR------K 82 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEE----------CCSSCEEEEEECCGGGSSCEEEEETTS------C
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEc----------CCCccEEEEEeCCCCCCCEEEEEECCC------E
Confidence 35566666644 46788888776543332210 000011222221 256777777542 3
Q ss_pred EEEEECCCCcEEEeeecCCCCC-CCcceEEEEE-C--CEEEEEcccCCCCCccCcEEEEEcCCC-cEEEe
Q 009910 175 VWTFDTETECWSVVEAKGDIPV-ARSGHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPL 239 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~ 239 (522)
+..+|+.+.+|..+.. +.. ...-.+++.. + +.+++.|+.+. .+.++|..+. .|...
T Consensus 83 v~iWd~~~~~~~~~~~---~~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 83 VIIWREENGTWEKSHE---HAGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVK 143 (316)
T ss_dssp EEEECCSSSCCCEEEE---ECCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEEC
T ss_pred EEEEECCCCcceEEEE---ccCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCccee
Confidence 8888998887755432 111 1111223332 2 56777776654 3677787664 57543
No 153
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.33 E-value=3.6 Score=38.92 Aligned_cols=195 Identities=7% Similarity=-0.037 Sum_probs=90.7
Q ss_pred CCE-EEEEcccCCCCCCceeEEEEEC-CCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKK-VLLVGGKTDSGSDRVSVWTFDT-ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~-iyv~GG~~~~~~~~~~v~~yd~-~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
++. .++.|+.+. .+..||+ .+.+...+.. .+....-.+++...+.+++.|+.+ ..+.+||+.+
T Consensus 67 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~ 131 (342)
T 1yfq_A 67 NTDLQIYVGTVQG------EILKVDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASWD------GLIEVIDPRN 131 (342)
T ss_dssp SSSEEEEEEETTS------CEEEECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred CCCcEEEEEcCCC------eEEEEEeccCCceEeccc---cCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence 566 667777542 4889999 8887655431 011122223333335566666654 3477788754
Q ss_pred Cc-------EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-Cc--EEEeeeCCCCCCCccce
Q 009910 234 LT-------WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MI--WTRIKIRGFHPSPRAGC 303 (522)
Q Consensus 234 ~~-------W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~--W~~~~~~~~~p~~r~~~ 303 (522)
.. ...+. .......-.+++...+. ++.|+.+ ..+..||+.+ .. ...... +....-.
T Consensus 132 ~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~--l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~----~~~~~i~ 197 (342)
T 1yfq_A 132 YGDGVIAVKNLNSN---NTKVKNKIFTMDTNSSR--LIVGMNN-----SQVQWFRLPLCEDDNGTIEES----GLKYQIR 197 (342)
T ss_dssp HTTBCEEEEESCSS---SSSSCCCEEEEEECSSE--EEEEEST-----TEEEEEESSCCTTCCCEEEEC----SCSSCEE
T ss_pred cccccccccCCeee---EEeeCCceEEEEecCCc--EEEEeCC-----CeEEEEECCccccccceeeec----CCCCcee
Confidence 00 11121 22222222233333343 4455433 3689999887 33 222222 1111122
Q ss_pred EEEEE--CCEEEEEcccCCCCCcCeEEEEECCCC------c-eEEeccCCCCCC--CCCCCcEEEEEeeCCccEEEEEcC
Q 009910 304 CGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG------E-WSVAITSPSSSV--TSNKGFTLVLVQHKEKDFLVAFGG 372 (522)
Q Consensus 304 ~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~------~-W~~~~~~p~~~~--~~r~~~~~~~~~~~~~~~l~v~GG 372 (522)
+++.. ++++++.|+.++ .+.++|.... + -..+........ ........+.+... +.+++.|+
T Consensus 198 ~i~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~ 270 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR--HKFLYTAG 270 (342)
T ss_dssp EEEECSGGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT--TCCEEEEE
T ss_pred EEEECCCCCCEEEEEecCC-----cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC--CCEEEEec
Confidence 33333 467777777643 3666555433 1 111111110000 00112233334322 33566776
Q ss_pred CCCCCCCcEEEEEcccCC
Q 009910 373 IKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 373 ~~~~~~~~v~~y~~~~~~ 390 (522)
.++ .|.+||+.+.+
T Consensus 271 ~dg----~i~vwd~~~~~ 284 (342)
T 1yfq_A 271 SDG----IISCWNLQTRK 284 (342)
T ss_dssp TTS----CEEEEETTTTE
T ss_pred CCc----eEEEEcCccHh
Confidence 543 58999988765
No 154
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.27 E-value=3.5 Score=38.87 Aligned_cols=193 Identities=10% Similarity=0.076 Sum_probs=94.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
++.+++.|+.+. .+..+|..+..-...-. ............-++++++.|+.+. .+.+||+.+.+
T Consensus 24 ~~~~l~s~~~dg------~v~lWd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d~------~i~vwd~~~~~ 88 (304)
T 2ynn_A 24 TEPWVLTTLYSG------RVELWNYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDDF------RIRVFNYNTGE 88 (304)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEEEGGGTEEEEEETTS------EEEEEETTTCC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCceeEEee---ccCCcEEEEEEeCCCCEEEEECCCC------EEEEEECCCCc
Confidence 456666776542 48888988876432211 1111111122223456677776543 47888988765
Q ss_pred EEE-eecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEE
Q 009910 236 WLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 312 (522)
Q Consensus 236 W~~-~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~i 312 (522)
-.. +. . ....-.+++...+..+++.|+.++ .+..||.+++. ....... .....-.+++.. ++.+
T Consensus 89 ~~~~~~---~--h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~-~~~~~~~--~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 89 KVVDFE---A--HPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENNW-ALEQTFE--GHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEEEE---C--CSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGTT-EEEEEEC--CCCSCEEEEEECTTCTTE
T ss_pred EEEEEe---C--CCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCCc-chhhhhc--ccCCcEEEEEECCCCCCE
Confidence 322 21 1 111122333444443667776654 48889986542 2222110 111111222232 4567
Q ss_pred EEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
++.|+.++. +.++|+.+..-...... ........+.+.......+++.|+.++ .|.++|+++.+
T Consensus 156 l~sgs~D~~-----v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~~ 219 (304)
T 2ynn_A 156 FASGCLDRT-----VKVWSLGQSTPNFTLTT-----GQERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTKS 219 (304)
T ss_dssp EEEEETTSE-----EEEEETTCSSCSEEEEC-----CCTTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTTE
T ss_pred EEEEeCCCe-----EEEEECCCCCccceecc-----CCcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCCc
Confidence 788887653 88899865432111100 111122233332222234566676543 57888877654
No 155
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=94.22 E-value=5.1 Score=43.37 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=81.3
Q ss_pred ceeEEEEECCCCcE--EEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC--c-EEEeecCCCC
Q 009910 172 RVSVWTFDTETECW--SVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL--T-WLPLHCTGTG 245 (522)
Q Consensus 172 ~~~v~~yd~~t~~W--~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~-W~~~~~~g~~ 245 (522)
...++++++.+..- ..+.. ....+........ -+++.+++...... ...++++++|+.+. . |..+.. .
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~l~~---~ 315 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFA--TPELPKRGHGASVSSDGRWVVITSSEGT-DPVNTVHVARVTNGKIGPVTALIP---D 315 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECTT-CSCCEEEEEEEETTEECCCEEEEC---S
T ss_pred CCEEEEEECCCCchhCEEEec--cCCCCeEEEEEEECCCCCEEEEEEEccC-CCcceEEEEECCCCCCcccEEecC---C
Confidence 34688999877652 22221 1111122222222 34544444433221 12568999999887 6 888852 1
Q ss_pred CCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC--CcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCC
Q 009910 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKR 323 (522)
Q Consensus 246 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~ 323 (522)
.... ...+..+++.||+....+ .....++.+|+++ ..|+.+.... .. .-......++++++....++
T Consensus 316 ~~~~--~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~--~~--~l~~~~~~~~~lv~~~~~dg--- 384 (741)
T 1yr2_A 316 LKAQ--WDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPES--KD--NLESVGIAGNRLFASYIHDA--- 384 (741)
T ss_dssp SSSC--EEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCC--SS--EEEEEEEEBTEEEEEEEETT---
T ss_pred CCce--EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCC--CC--eEEEEEEECCEEEEEEEECC---
Confidence 1111 222234555577665332 2245799999987 5798886431 11 11223334788887765443
Q ss_pred cCeEEEEECCCCceEEe
Q 009910 324 HAETLIFDILKGEWSVA 340 (522)
Q Consensus 324 ~~~v~~yd~~~~~W~~~ 340 (522)
...++.+|+....-..+
T Consensus 385 ~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 385 KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EEEEEEEETTSCEEEEC
T ss_pred EEEEEEEeCCCCceeec
Confidence 35688999865544443
No 156
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=94.18 E-value=2.6 Score=39.54 Aligned_cols=187 Identities=10% Similarity=0.055 Sum_probs=92.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
.+++++.|..+ ..+..+|.++++ |+.-.. . . ....+..+.-+++|++.+ -+.+..||++.
T Consensus 4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~~--~-~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~~G 65 (276)
T 3no2_A 4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPLE--K-G-WECNSVAATKAGEILFSY--------SKGAKMITRDG 65 (276)
T ss_dssp CCEEEEECTTC------SEEEEEETTTTEEEEEEECC--T-T-CCCCEEEECTTSCEEEEC--------BSEEEEECTTS
T ss_pred CCcEEEeeCCC------CEEEEEECCCCeEEEEeCCC--c-c-CCCcCeEECCCCCEEEeC--------CCCEEEECCCC
Confidence 35677776543 358899998876 765331 0 0 122223333467888832 13589999832
Q ss_pred C-cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc-EEEeeeCCCCCC--CccceEEEEEC
Q 009910 234 L-TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPS--PRAGCCGVLCG 309 (522)
Q Consensus 234 ~-~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~p~--~r~~~~~~~~~ 309 (522)
. .|+.-. +.....+++....+..+++..... ...++.+|++.+. |+. ......+. ..........+
T Consensus 66 ~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~-~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 66 RELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKT-EFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp CEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEE-EECCSCSSGGGSCSCCEECTT
T ss_pred CEEEEEcC-----CCCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEE-eccCCCCcccccccCceECCC
Confidence 2 366432 211223444555444355543221 2358888885543 443 22111111 11112223335
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCC-ceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 310 TKWYIAGGGSRKKRHAETLIFDILKG-EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 310 ~~iyi~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
+.+++....+ ..+.+||++.+ .|+.-. + ..-+++..+. .+.+++.+..+ +.|..+|+++
T Consensus 136 G~~lv~~~~~-----~~v~~~d~~G~~~w~~~~--~------~~~~~~~~~~---~g~~~v~~~~~----~~v~~~d~~t 195 (276)
T 3no2_A 136 GNYLVPLFAT-----SEVREIAPNGQLLNSVKL--S------GTPFSSAFLD---NGDCLVACGDA----HCFVQLNLES 195 (276)
T ss_dssp SCEEEEETTT-----TEEEEECTTSCEEEEEEC--S------SCCCEEEECT---TSCEEEECBTT----SEEEEECTTT
T ss_pred CCEEEEecCC-----CEEEEECCCCCEEEEEEC--C------CCccceeEcC---CCCEEEEeCCC----CeEEEEeCcC
Confidence 6666654422 45899998743 365422 1 1123333332 23466665543 2478888875
Q ss_pred CC
Q 009910 389 NE 390 (522)
Q Consensus 389 ~~ 390 (522)
.+
T Consensus 196 G~ 197 (276)
T 3no2_A 196 NR 197 (276)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 157
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.14 E-value=8.1 Score=42.17 Aligned_cols=196 Identities=6% Similarity=-0.013 Sum_probs=106.6
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.|+|... +.+.+||+.+.+......... .+...-.+++. -++.|++... ..++
T Consensus 98 ~g~lWigT~-------~Gl~~yd~~~~~f~~~~~~~~---------~~~~~i~~i~~d~~g~lwi~t~--------~gl~ 153 (795)
T 4a2l_A 98 QGRVWIGTR-------DGLSRYDEEKDIFQNFFYEKN---------GKHLQVNGIEEISPEQLLISTP--------EGLI 153 (795)
T ss_dssp TSCEEEEES-------SCEEEEETTTTEEEEECCEET---------TEECCCCEEEEEETTEEEEEET--------TEEE
T ss_pred CCCEEEEeC-------CchheeCCCCCeEEecccccc---------CCCceEEEEEECCCCCEEEEEC--------CceE
Confidence 356887432 458999999988877643210 00000122333 3678887532 1389
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEE
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~ 255 (522)
+||..++++..+.. ..+....-.++.. .++.||+. . . ...+++||+.+.++.... ..+....-.+..
T Consensus 154 ~~~~~~~~~~~~~~--~~~~~~~i~~i~~d~~g~lwig-t-~-----~~Gl~~~~~~~~~~~~~~---~~~~~~~i~~i~ 221 (795)
T 4a2l_A 154 MFDIKESKFIDDSF--STAMHKTIASTLYRQGDQIYIG-T-S-----TDGLYTYSITQKTFEKVI---PILGTKQIQAIL 221 (795)
T ss_dssp EEETTTTEEECSSS--CHHHHTCCEEEEEEETTEEEEE-E-S-----SSCEEEEETTTCCEEECC-------CCCEEEEE
T ss_pred EEECCCCEEEeccC--CCCCCcceEEEEECCCCCEEEE-E-C-----CCCEEEEeCCCCeEEEec---CCCCCCeeEEEE
Confidence 99999988765432 1111110122333 36888883 1 1 124899999999988763 111111122333
Q ss_pred EECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCC---ccceEEEEE-CCEEEEEcccCCCCCcCeEEEEE
Q 009910 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP---RAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~---r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd 331 (522)
...+..|+|.. . .+.+++||+.+++++........|.. ..-.+++.. ++.|+|.. .. -+++||
T Consensus 222 ~d~~g~lwigt-~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~------Gl~~~~ 288 (795)
T 4a2l_A 222 QQSPTRIWVAT-E-----GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN------DLNIYH 288 (795)
T ss_dssp EEETTEEEEEE-B-----SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS------CEEEEE
T ss_pred EcCCCCEEEEE-C-----CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC------hhheEc
Confidence 33344466632 1 12499999999988877543111111 112222222 56666632 22 289999
Q ss_pred CCCCceEEecc
Q 009910 332 ILKGEWSVAIT 342 (522)
Q Consensus 332 ~~~~~W~~~~~ 342 (522)
+.+.+++.+..
T Consensus 289 ~~~~~~~~~~~ 299 (795)
T 4a2l_A 289 EGTDSFASYSS 299 (795)
T ss_dssp TTTTEEEEECC
T ss_pred CCCCeEEEEec
Confidence 99999988754
No 158
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.13 E-value=0.49 Score=47.68 Aligned_cols=194 Identities=9% Similarity=0.040 Sum_probs=95.2
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
++.+++.|+.++ .|.++|..+..-..+.. .......-.+++.. ++.+++.|+.++ .+.++|+++
T Consensus 131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~--~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~~ 196 (435)
T 4e54_B 131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIK--GIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFKG 196 (435)
T ss_dssp CTTCEEEEETTS------CEEEECSSCCSCCEEEC--CCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCceeEEE--ccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeeccC
Confidence 456777887653 38888887765433321 01111112233332 456777777654 377889988
Q ss_pred CcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE---CC
Q 009910 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GT 310 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~ 310 (522)
.....+.... .......++....+..+++.|+.++ .+..||+....-..+. .......++.+ +.
T Consensus 197 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~~~~~~~------~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 197 NILRVFASSD--TINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGKELWNLR------MHKKKVTHVALNPCCD 263 (435)
T ss_dssp CEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSCBCCCSB------CCSSCEEEEEECTTCS
T ss_pred CceeEEeccC--CCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcceeEEEe------cccceEEeeeecCCCc
Confidence 7666554211 1111222333443433777787653 5889998654321111 11111222333 34
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 311 ~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+++.|+.++. +.+||+.+.+-..... .. ..-......+.+..+ +..++.|+.++ .|.+||+.+.+
T Consensus 264 ~~~~s~s~d~~-----v~iwd~~~~~~~~~~~--~~-~~h~~~v~~~~~spd--g~~l~s~~~D~----~i~iwd~~~~~ 329 (435)
T 4e54_B 264 WFLATASVDQT-----VKIWDLRQVRGKASFL--YS-LPHRHPVNAACFSPD--GARLLTTDQKS----EIRVYSASQWD 329 (435)
T ss_dssp SEEEEEETTSB-----CCEEETTTCCSSSCCS--BC-CBCSSCEEECCBCTT--SSEEEEEESSS----CEEEEESSSSS
T ss_pred eEEEEecCcce-----eeEEecccccccceEE--Ee-eeccccccceeECCC--CCeeEEEcCCC----EEEEEECCCCc
Confidence 56777776543 6788876644221100 00 000111122223222 23566676543 58888876643
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.12 E-value=2 Score=40.87 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-C-CEEEEEcccCCCCCcCeEEEEECCCCceE
Q 009910 275 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (522)
Q Consensus 275 ~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyi~GG~~~~~~~~~v~~yd~~~~~W~ 338 (522)
+.+++||+++.+-......+. ...+++.. + +.||+ ++.+ ..+.+||+.+.+-.
T Consensus 275 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~-~~~~-----~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 275 NRLAKYDLKQRKLIKAANLDH-----TYYCVAFDKKGDKLYL-GGTF-----NDLAVFNPDTLEKV 329 (349)
T ss_dssp SEEEEEETTTTEEEEEEECSS-----CCCEEEECSSSSCEEE-ESBS-----SEEEEEETTTTEEE
T ss_pred CeEEEEECccCeEEEEEcCCC-----CccceEECCCCCEEEE-ecCC-----CeEEEEecccccee
Confidence 579999998876543332221 11233333 3 45766 4432 56999999876543
No 160
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.10 E-value=3 Score=39.03 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=96.5
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.||+.+... ..+++||+.++ .+.+.. +.. .-.+++. -++++|+.... ...+.+||+.+.
T Consensus 39 g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~----~~~-~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g 100 (296)
T 3e5z_A 39 RSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH----PSH-HQNGHCLNKQGHLIACSHG------LRRLERQREPGG 100 (296)
T ss_dssp GTEEEEEEGGG------TEEEEEETTSC-EEEEES----SCS-SEEEEEECTTCCEEEEETT------TTEEEEECSTTC
T ss_pred CCEEEEEeCCC------CEEEEEECCCC-eEEEEC----CCC-CcceeeECCCCcEEEEecC------CCeEEEEcCCCC
Confidence 34588887543 25999999988 665542 222 2233333 35778776421 245899999888
Q ss_pred cEEEeecC-CCCCCCCcceEEEEECCcEEEEE----cCCC--------CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCcc
Q 009910 235 TWLPLHCT-GTGPSPRSNHVAALYDDKNLLIF----GGSS--------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (522)
Q Consensus 235 ~W~~~~~~-g~~p~~r~~~~~~~~~~~~lyv~----GG~~--------~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~ 301 (522)
+.+.+... ...+..+.. .++.-.+..+|+. |... .......++++++. +..+.+... ...
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~--- 173 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD--RVK--- 173 (296)
T ss_dssp CEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC--CSS---
T ss_pred cEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC--CCC---
Confidence 87766311 011111111 2333334447775 4311 01113479999987 555554322 111
Q ss_pred ceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC-CCce-EEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCC
Q 009910 302 GCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (522)
Q Consensus 302 ~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~-~~~W-~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~ 378 (522)
..+.+.. ++++++.+... ..+++||+. +.+. ............+ ..+++..+ +.||+..+
T Consensus 174 ~~gi~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~p----~~i~~d~~--G~l~v~~~------ 236 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGD-----NATHRYCLNARGETEYQGVHFTVEPGKT----DGLRVDAG--GLIWASAG------ 236 (296)
T ss_dssp EEEEEECTTSCEEEEETTT-----TEEEEEEECSSSCEEEEEEEECCSSSCC----CSEEEBTT--SCEEEEET------
T ss_pred CccEEECCCCCEEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCCCCCC----CeEEECCC--CCEEEEcC------
Confidence 1222332 56665544322 359999986 4555 2111111110011 12334322 34776651
Q ss_pred CcEEEEEcccC
Q 009910 379 NQVEVLSIEKN 389 (522)
Q Consensus 379 ~~v~~y~~~~~ 389 (522)
+.|.+|+++..
T Consensus 237 ~~v~~~~~~g~ 247 (296)
T 3e5z_A 237 DGVHVLTPDGD 247 (296)
T ss_dssp TEEEEECTTSC
T ss_pred CeEEEECCCCC
Confidence 36899998744
No 161
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.05 E-value=3.4 Score=40.39 Aligned_cols=202 Identities=16% Similarity=0.099 Sum_probs=93.8
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCC--cEEEeeecCCCC-CCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIP-VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFD 230 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd 230 (522)
++.+++.|+.+. .+..||..+. ....+.. +. ....-.+++.. ++.+++.|+.++ .+.+||
T Consensus 78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg------~v~iwd 142 (416)
T 2pm9_A 78 NNKIIAGALDNG------SLELYSTNEANNAINSMAR---FSNHSSSVKTVKFNAKQDNVLASGGNNG------EIFIWD 142 (416)
T ss_dssp SSSCEEEEESSS------CEEEECCSSTTSCCCEEEE---CCCSSSCCCEEEECSSSTTBEEEECSSS------CEEBCB
T ss_pred CCCeEEEEccCC------eEEEeecccccccccchhh---ccCCccceEEEEEcCCCCCEEEEEcCCC------eEEEEE
Confidence 456666766532 3778888761 1212221 11 11112233332 266777777543 378888
Q ss_pred cCCCc------EE-EeecCCCCCCCCcceEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCC--Cc
Q 009910 231 LKSLT------WL-PLHCTGTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--PR 300 (522)
Q Consensus 231 ~~t~~------W~-~~~~~g~~p~~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~--~r 300 (522)
+.+.+ -. .+.. .......-.+++...+ ..+++.|+.++ .+.+||+.+..-...-....... ..
T Consensus 143 ~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQ--SMSSVDEVISLAWNQSLAHVFASAGSSN-----FASIWDLKAKKEVIHLSYTSPNSGIKQ 215 (416)
T ss_dssp TTTTSSCTTTCCCBCCCC--SCCSSCCCCEEEECSSCTTEEEEESSSS-----CEEEEETTTTEEEEEECCCCCSSCCCC
T ss_pred CCCCcccccccccccccc--ccCCCCCeeEEEeCCCCCcEEEEEcCCC-----CEEEEECCCCCcceEEeccccccccCC
Confidence 87654 11 1100 0111112223334333 33777776643 59999998875443332210000 11
Q ss_pred cceEEEEE-C-CEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCC
Q 009910 301 AGCCGVLC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (522)
Q Consensus 301 ~~~~~~~~-~-~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~ 378 (522)
.-.+++.. + ..+++.|+.++. ...+.+||+.+..- .+..... ........+.+...+ ..+++.|+.++
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~~~---~~~~~v~~~~~s~~~-~~~l~s~~~dg--- 285 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTLNQ---GHQKGILSLDWCHQD-EHLLLSSGRDN--- 285 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCCCS---CCSSCEEEEEECSSC-SSCEEEEESSS---
T ss_pred ceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEeec---CccCceeEEEeCCCC-CCeEEEEeCCC---
Confidence 12222332 3 357777765541 12478899877431 1111110 011122333333212 33666776543
Q ss_pred CcEEEEEcccCC
Q 009910 379 NQVEVLSIEKNE 390 (522)
Q Consensus 379 ~~v~~y~~~~~~ 390 (522)
.|.+||+.+.+
T Consensus 286 -~v~~wd~~~~~ 296 (416)
T 2pm9_A 286 -TVLLWNPESAE 296 (416)
T ss_dssp -EEEEECSSSCC
T ss_pred -CEEEeeCCCCc
Confidence 57888877654
No 162
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.03 E-value=1.9 Score=42.48 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=78.5
Q ss_pred EEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcE
Q 009910 158 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236 (522)
Q Consensus 158 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W 236 (522)
.+++.|+.+. .+.+||..+.+....-. .......-.+++.. ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 145 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 145 NVLLSAGCDN------VILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTV 210 (402)
T ss_dssp TEEEEEETTS------CEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEE
T ss_pred CEEEEEcCCC------EEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCce
Confidence 5777777542 38899999886543220 00111111222222 56677777654 3489999988764
Q ss_pred EEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE-EEeeeCCCCCCCccceEEEEE--CCEEE
Q 009910 237 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC--GTKWY 313 (522)
Q Consensus 237 ~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~p~~r~~~~~~~~--~~~iy 313 (522)
...-. ..........++...+..+++.|... ..-..+.+||+.+..- ...... .....-.+++.. +..++
T Consensus 211 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 211 VAEKD--RPHEGTRPVHAVFVSEGKILTTGFSR--MSERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp EEEEE--CSSCSSSCCEEEECSTTEEEEEEECT--TCCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEE
T ss_pred eeeec--cCCCCCcceEEEEcCCCcEEEEeccC--CCCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEE
Confidence 33210 11111112334444555466666210 0124689999876431 111111 111112223333 34566
Q ss_pred EEcccCCCCCcCeEEEEECCCCc--eEEec
Q 009910 314 IAGGGSRKKRHAETLIFDILKGE--WSVAI 341 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 341 (522)
+.|+.++ .+.+||+.+.+ ...+.
T Consensus 284 ~~g~~dg-----~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 284 LCGKGDS-----SIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp EEETTCS-----CEEEEEECSSTTCEEEEE
T ss_pred EEEcCCC-----eEEEEEecCCCcceEeec
Confidence 6665554 38899988766 44444
No 163
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=93.96 E-value=1 Score=43.20 Aligned_cols=237 Identities=12% Similarity=0.077 Sum_probs=112.5
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--C---CEEEEEcccCCCCCCce
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--G---KKVLLVGGKTDSGSDRV 173 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~---~~iyv~GG~~~~~~~~~ 173 (522)
..+++.|+... ....+.+||..+.+........ . ...-..+.+ + +.+++.|+.+.
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~----------~--~~~v~~~~~~~~~~~~~~l~~~~~dg------ 90 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIE----------K--AKPIKCGTFGATSLQQRYLATGDFGG------ 90 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEE----------E--SSCEEEEECTTCCTTTCCEEEEETTS------
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeec----------c--cCcEEEEEEcCCCCCCceEEEecCCC------
Confidence 35666775421 1256889999887665443210 0 011122222 2 36677776542
Q ss_pred eEEEEECCCCc--EEEeeecCCCCCCCcceEEEE-------ECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEeecC
Q 009910 174 SVWTFDTETEC--WSVVEAKGDIPVARSGHTVVR-------ASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCT 242 (522)
Q Consensus 174 ~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~ 242 (522)
.+..||..+.+ -..+.. .. ..-.++.. -++.+++.|+.++ .+.+||+.+.. ...+...
T Consensus 91 ~i~iwd~~~~~~~~~~~~~---~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKG---HK--EIINAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp CEEEECTTSCSSCSEEECC---CS--SCEEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC
T ss_pred eEEEEeCCCCCccEEEEEe---cc--cceEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceecccc
Confidence 38888888765 222221 11 11111211 2456677776543 48889988754 3333211
Q ss_pred CCCCCCCcceEEEE-----ECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE----CCEEE
Q 009910 243 GTGPSPRSNHVAAL-----YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----GTKWY 313 (522)
Q Consensus 243 g~~p~~r~~~~~~~-----~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~iy 313 (522)
.....+.-.+++. -++. +++.|+.+ ..+..||+.+..-...... ...-.+++.. ++..+
T Consensus 160 -~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 160 -QGENKRDCWTVAFGNAYNQEER-VVCAGYDN-----GDIKLFDLRNMALRWETNI-----KNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp -TTSCCCCEEEEEEECCCC-CCC-EEEEEETT-----SEEEEEETTTTEEEEEEEC-----SSCEEEEEESCSSSSCCEE
T ss_pred -CCCCCCceEEEEEEeccCCCCC-EEEEEccC-----CeEEEEECccCceeeecCC-----CCceEEEEcCCCCCCCCEE
Confidence 1111112222221 2444 66666543 3699999988764333222 1112233333 45677
Q ss_pred EEcccCCCCCcCeEEEEECCCCceE-EeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWS-VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.|+.++ .+.+||+.+.+-. .+... ...........+.+. .+...+++.|+.++ .|.+||+....
T Consensus 228 ~~~~~dg-----~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg----~i~iwd~~~~~ 293 (357)
T 3i2n_A 228 VATSLEG-----KFHVFDMRTQHPTKGFASV--SEKAHKSTVWQVRHL-PQNRELFLTAGGAG----GLHLWKYEYPI 293 (357)
T ss_dssp EEEESTT-----EEEEEEEEEEETTTEEEEE--EEECCSSCEEEEEEE-TTEEEEEEEEETTS----EEEEEEEECCS
T ss_pred EEECCCC-----eEEEEeCcCCCcccceeee--ccCCCcCCEEEEEEC-CCCCcEEEEEeCCC----cEEEeecCCCc
Confidence 7776554 4788887553210 00000 000111122333333 22233677777654 58888887655
No 164
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.92 E-value=2.3 Score=44.20 Aligned_cols=151 Identities=7% Similarity=0.029 Sum_probs=74.4
Q ss_pred EEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC--CcceEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 210 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP--RSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 210 iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~--r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
+++.|+.+ ..+.+||..+.+-...- ..... ..-.+++...+ ..+++.|+.++ .+.+||+.+..
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----KISCFDGKSGE 240 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETTC-----CEEEEETTTCC
T ss_pred EEEEEeCC------CcEEEEeCCCcceeeee---cccCCCCceEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCC
Confidence 67777654 34888898765533321 11111 02223334434 33666676543 58999988765
Q ss_pred EEEeeeCCC-CCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCcc
Q 009910 287 WTRIKIRGF-HPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (522)
Q Consensus 287 W~~~~~~~~-~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~ 365 (522)
....-.... ...... .+++..++..++.|+.++ .+.+||+.+.+.......+.. ........+... .+
T Consensus 241 ~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~-- 309 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGI-FALSWLDSQKFATVGADA-----TIRVWDVTTSKCVQKWTLDKQ--QLGNQQVGVVAT-GN-- 309 (615)
T ss_dssp EEEECCBTTBCCCSCE-EEEEESSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCTT--CGGGCEEEEEEE-ET--
T ss_pred EeEEecccccccCCce-EEEEEcCCCEEEEEcCCC-----cEEEEECCCCcEEEEEcCCCC--cccCceeEEEeC-CC--
Confidence 443321000 011111 122222677777777653 488999987765443322211 111122223332 22
Q ss_pred EEEEEcCCCCCCCCcEEEEEcccC
Q 009910 366 FLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 366 ~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
..++.|+.++ .+.+||+.+.
T Consensus 310 ~~l~~~~~~g----~i~~~d~~~~ 329 (615)
T 1pgu_A 310 GRIISLSLDG----TLNFYELGHD 329 (615)
T ss_dssp TEEEEEETTS----CEEEEETTEE
T ss_pred CeEEEEECCC----CEEEEECCCC
Confidence 2556666543 5788887654
No 165
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.91 E-value=6.9 Score=41.35 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=66.2
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEEC-CCCc--EEEeeecCC--CCCC---CcceEEEE--ECCE----EEEEccc
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVA---RSGHTVVR--ASSV----LILFGGE 216 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~~~--~p~~---r~~~~~~~--~~~~----iyv~GG~ 216 (522)
+-++.++.||+.... ...++.+|. .+++ |+.-..... .+.. ......++ .+++ ||+...
T Consensus 57 tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred ccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 335569999998652 124999999 7775 886432110 0000 11123344 5666 777521
Q ss_pred CCCCCccCcEEEEEcCCCc--EEEeecCCCCCCC-CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEee
Q 009910 217 DGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 291 (522)
Q Consensus 217 ~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 291 (522)
-..++.+|.++.+ |+.-.. ..... ....+-++.++. ||+-.+.........++.||.++++ |+.-.
T Consensus 130 ------dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 ------DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVVKDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ------CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEECCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 2458999998765 876421 10000 111222345554 5553221111124579999998654 87654
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=93.85 E-value=4.1 Score=37.75 Aligned_cols=195 Identities=6% Similarity=0.005 Sum_probs=97.8
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCC-CCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
++.+|+....+ ..+.+||+.......+...+..+. ...-+.++.. ++.||+.+... ...+.+||+.
T Consensus 40 ~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~ 108 (286)
T 1q7f_A 40 QNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQY 108 (286)
T ss_dssp TCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTT
T ss_pred CCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCC
Confidence 46788875432 248899988554444432111111 1122344442 57899875321 2458899965
Q ss_pred CCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE
Q 009910 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 311 (522)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~ 311 (522)
...-..+. . +....-..++...+..+|+.... .+.+++||+.......+...+.. ..-.+.+.. +++
T Consensus 109 g~~~~~~~---~-~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 109 GQFVRKFG---A-TILQHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQE 176 (286)
T ss_dssp SCEEEEEC---T-TTCSCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTC---SSEEEEEECSSSE
T ss_pred CcEEEEec---C-ccCCCceEEEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCC
Confidence 44433332 1 11111233444334348886532 24699999876555444321111 111223332 578
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
+|+.+..+ ..|++||+.......+... . .......+++..+ +.||+...... ..|.+|+++.
T Consensus 177 l~v~~~~~-----~~i~~~~~~g~~~~~~~~~-g----~~~~p~~i~~d~~--G~l~v~~~~~~---~~i~~~~~~g 238 (286)
T 1q7f_A 177 IFISDNRA-----HCVKVFNYEGQYLRQIGGE-G----ITNYPIGVGINSN--GEILIADNHNN---FNLTIFTQDG 238 (286)
T ss_dssp EEEEEGGG-----TEEEEEETTCCEEEEESCT-T----TSCSEEEEEECTT--CCEEEEECSSS---CEEEEECTTS
T ss_pred EEEEECCC-----CEEEEEcCCCCEEEEEccC-C----ccCCCcEEEECCC--CCEEEEeCCCC---EEEEEECCCC
Confidence 98876533 4599999876554444321 1 0112233444432 35776654321 1588888654
No 167
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.75 E-value=4.3 Score=42.60 Aligned_cols=205 Identities=15% Similarity=0.142 Sum_probs=108.5
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCC--------CCCCcceEEEEECCEEEEEcccCCCCCccCcEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI--------PVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~--------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 227 (522)
+..+|+..-. .+.+.++|..+.+=...-+.+.+ |.+|.....+..++..+++-= .....++
T Consensus 255 Gk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~ 323 (567)
T 1qks_A 255 DKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKIL 323 (567)
T ss_dssp TTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEE
T ss_pred CCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEE
Confidence 4567766332 23577889887664332221111 233443333333333333311 2246788
Q ss_pred EEEcCCCcEEEeecCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC-CCCCCCccceEE
Q 009910 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCG 305 (522)
Q Consensus 228 ~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~p~~r~~~~~ 305 (522)
+.|..+.+...+. ..+..+.-|....-. ++++|+... ..+.|.++|.++++-...... +..|.+..+..
T Consensus 324 ~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~- 394 (567)
T 1qks_A 324 LVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN- 394 (567)
T ss_dssp EEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred EEecCCCccceee---eeeccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence 9998877655554 344455556555444 444555432 246799999998865544444 44455433333
Q ss_pred EEE--CCEEEEEcccCCCCCcCeEEEEECCCCc-----eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC--
Q 009910 306 VLC--GTKWYIAGGGSRKKRHAETLIFDILKGE-----WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 376 (522)
Q Consensus 306 ~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~-----W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~-- 376 (522)
... ++.+|+.+-... ..|-++|..+.. |+.+...+.. . ..++.+..+.+..++||---.+.+
T Consensus 395 ~~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~~~---g--~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFPAL---G--GGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp EEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECS---C--SCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred eECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEecC---C--CCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 233 367777653221 348888877633 8877654432 1 112222233455678874422222
Q ss_pred CCCcEEEEEcccC
Q 009910 377 PSNQVEVLSIEKN 389 (522)
Q Consensus 377 ~~~~v~~y~~~~~ 389 (522)
..+.|.+||+.+.
T Consensus 466 ~~~~v~v~d~~~~ 478 (567)
T 1qks_A 466 ISGSVAVFDIKAM 478 (567)
T ss_dssp HHTCEEEEEGGGC
T ss_pred cCceEEEEECCcc
Confidence 2568999999876
No 168
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.74 E-value=2.9 Score=39.80 Aligned_cols=155 Identities=7% Similarity=-0.055 Sum_probs=83.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
+++||+.+... ..+++||+.+++...+.. .+ ...-++++.. ++++|+....+.. ....+++||+++.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~---~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFV---SH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEE---CS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEee---CC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence 56788876532 259999999998876642 11 1222334432 5678886533211 1256999999887
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCC-CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CC-E
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-K 311 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~ 311 (522)
....+.. .......-..++...+..+|+..... .......++++|+++.+...+.... . ...+.+.. ++ .
T Consensus 123 ~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~---~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI--S---VANGIALSTDEKV 195 (333)
T ss_dssp SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE--S---SEEEEEECTTSSE
T ss_pred EEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC--C---cccceEECCCCCE
Confidence 7654321 11111222233333344477654321 1112357999998877766653310 1 11222222 33 5
Q ss_pred EEEEcccCCCCCcCeEEEEECCC
Q 009910 312 WYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
+|+..... ..+++||+.+
T Consensus 196 l~v~~~~~-----~~i~~~d~~~ 213 (333)
T 2dg1_A 196 LWVTETTA-----NRLHRIALED 213 (333)
T ss_dssp EEEEEGGG-----TEEEEEEECT
T ss_pred EEEEeCCC-----CeEEEEEecC
Confidence 77765332 3589999854
No 169
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=93.73 E-value=2.8 Score=38.32 Aligned_cols=190 Identities=13% Similarity=0.016 Sum_probs=97.8
Q ss_pred EEEEE-CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCC
Q 009910 93 AAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGS 170 (522)
Q Consensus 93 ~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~ 170 (522)
+++.. ++.+||... .+.+++||+.+......... . ...-+.++.. +++||+.....
T Consensus 71 ~i~~~~~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~----------~--~~~p~~i~~~~~g~l~v~~~~~---- 128 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF------NNRVVTLAAGSNNQTVLPFD----------G--LNYPEGLAVDTQGAVYVADRGN---- 128 (270)
T ss_dssp CEEECTTCCEEEEET------TTEEEEECTTCSCCEECCCC----------S--CSSEEEEEECTTCCEEEEEGGG----
T ss_pred eeEECCCCCEEEEcC------CCEEEEEeCCCceEeeeecC----------C--cCCCcceEECCCCCEEEEECCC----
Confidence 34433 456888764 24689999887654443221 0 0112334443 56788874321
Q ss_pred CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 009910 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (522)
Q Consensus 171 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 249 (522)
..+++|+..+........ .....-..++.. +++||+.... .+.+.+||+.+..-...... .+ .
T Consensus 129 --~~i~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~~---~ 192 (270)
T 1rwi_B 129 --NRVVKLAAGSKTQTVLPF----TGLNDPDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFT-DI---T 192 (270)
T ss_dssp --TEEEEECTTCCSCEECCC----CSCCSCCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCS-SC---C
T ss_pred --CEEEEEECCCceeEeecc----ccCCCceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeeccc-CC---C
Confidence 248888876665443221 111122334443 4778886432 24689999887664433211 11 1
Q ss_pred cceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEE
Q 009910 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 328 (522)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~ 328 (522)
.-...+.-.+..+|+.... .+.+.+||+.+..-...... ....-.+++.. ++.||+....+ +.|.
T Consensus 193 ~p~~i~~d~~g~l~v~~~~-----~~~v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~~~~-----~~v~ 258 (270)
T 1rwi_B 193 APWGIAVDEAGTVYVTEHN-----TNQVVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDRTVYVADRGN-----DRVV 258 (270)
T ss_dssp SEEEEEECTTCCEEEEETT-----TSCEEEECTTCSCCEECCCC----SCSCEEEEEECTTCCEEEEEGGG-----TEEE
T ss_pred CceEEEECCCCCEEEEECC-----CCcEEEEcCCCCcceeeccC----CCCCceeEEECCCCCEEEEECCC-----CEEE
Confidence 1223334334348876532 23599999876543332111 11112233332 56788886544 3488
Q ss_pred EEECCC
Q 009910 329 IFDILK 334 (522)
Q Consensus 329 ~yd~~~ 334 (522)
+|++..
T Consensus 259 ~~~~~~ 264 (270)
T 1rwi_B 259 KLTSLE 264 (270)
T ss_dssp EECCCG
T ss_pred EEcCCC
Confidence 887654
No 170
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.67 E-value=0.78 Score=53.00 Aligned_cols=233 Identities=10% Similarity=0.069 Sum_probs=111.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++..+++|+.. ..+.+||..+........ ... .........-+++.++.|+.+. .+..
T Consensus 972 ~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~----------~h~-~~v~~l~~s~dg~~l~s~~~dg------~i~v 1029 (1249)
T 3sfz_A 972 HLEYVAFGDED-----GAIKIIELPNNRVFSSGV----------GHK-KAVRHIQFTADGKTLISSSEDS------VIQV 1029 (1249)
T ss_dssp TSSEEEEEETT-----SCCEEEETTTTSCEEECC----------CCS-SCCCCEEECSSSSCEEEECSSS------BEEE
T ss_pred CCCEEEEEcCC-----CCEEEEEcCCCceeeecc----------cCC-CceEEEEECCCCCEEEEEcCCC------EEEE
Confidence 34566666533 467888887764332211 001 1111122222566666776542 4889
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~ 257 (522)
||..+++...... ....-.+++...+..++.|+.+ ..+.+||+.+.+-...- ........ +++..
T Consensus 1030 wd~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~---~~~~~~v~-~~~~s 1094 (1249)
T 3sfz_A 1030 WNWQTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGRIERDF---TCHQGTVL-SCAIS 1094 (1249)
T ss_dssp EETTTTEEECCBC-----CSSCEEEEEECSSSEEEEEESS------SEEEEEETTTTCCCEEE---ECCSSCCC-CEEEC
T ss_pred EECCCCceEEEec-----CCCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCceeEEE---cccCCcEE-EEEEC
Confidence 9999887654321 1112223333344445555543 34888998876533221 11111112 23333
Q ss_pred CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
.+..+++.|+.++ .+.+||..+.. .+... ........++.+ ++++++.|+.++. +.+||+.+.
T Consensus 1095 ~d~~~l~s~s~d~-----~v~iwd~~~~~--~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~-----i~vwd~~~~ 1159 (1249)
T 3sfz_A 1095 SDATKFSSTSADK-----TAKIWSFDLLS--PLHEL---KGHNGCVRCSAFSLDGILLATGDDNGE-----IRIWNVSDG 1159 (1249)
T ss_dssp SSSSSCEEECCSS-----CCCEECSSSSS--CSBCC---CCCSSCEEEEEECSSSSEEEEEETTSC-----CCEEESSSS
T ss_pred CCCCEEEEEcCCC-----cEEEEECCCcc--eeeee---ccCCCcEEEEEECCCCCEEEEEeCCCE-----EEEEECCCC
Confidence 3333667776543 47778876543 11111 111111122223 6778888876654 788898775
Q ss_pred ceEEeccCCCCC----CCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCc
Q 009910 336 EWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 336 ~W~~~~~~p~~~----~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w 391 (522)
+...... +... .........+.+..++ . +++.+| ..+.+||+.+.+.
T Consensus 1160 ~~~~~~~-~~~~~~~~~~~~~~v~~l~fs~dg-~-~l~s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1160 QLLHSCA-PISVEEGTATHGGWVTDVCFSPDS-K-TLVSAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp CCCCCCC-CCC-------CCSCCCEEEECTTS-S-CEEEES------SSEEEBCSSSCBC
T ss_pred ceEEEec-cccccccccccCceEEEEEECCCC-C-EEEECC------CeEEEEECCCCce
Confidence 5322110 0000 0111122334444333 3 344444 2689999887664
No 171
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=93.61 E-value=1.6 Score=46.94 Aligned_cols=212 Identities=9% Similarity=0.018 Sum_probs=108.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCcc-ceEEEEECCEEEEEcccCCCC-------
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKVLLVGGKTDSG------- 169 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~------- 169 (522)
+++.++|.-.........++++|+.+.+... .. ..+... ...+-.-+++.++++......
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~-----------~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VD-----------VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SC-----------CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcC-Cc-----------ccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 4555554332222223579999999876531 10 011111 111222255555555543221
Q ss_pred CCceeEEEEECCCCcE--EEeeecCCCCC-CCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCC
Q 009910 170 SDRVSVWTFDTETECW--SVVEAKGDIPV-ARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~W--~~~~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 245 (522)
.....++++++.+..- ..+.. .+. ......... -+++.+++...... ..++++.+|..+..|..+...
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~---~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~--- 270 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHE---RTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG--- 270 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEEC---CCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC---
T ss_pred CCCCEEEEEECCCCchhceEEEe---cCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC---
Confidence 1234699999988763 23321 121 122222222 24555555443321 246788888877788888621
Q ss_pred CCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc---EEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (522)
Q Consensus 246 p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~ 322 (522)
... ....+..+++ +|+....+ .....++++|+++.. |+.+.... + ...-......++++++....++
T Consensus 271 ~~~--~~~~~~~~g~-l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg-- 340 (695)
T 2bkl_A 271 VGA--KYEVHAWKDR-FYVLTDEG--APRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA-- 340 (695)
T ss_dssp SSC--CEEEEEETTE-EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT--
T ss_pred CCc--eEEEEecCCc-EEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC--
Confidence 111 1222335666 77765432 224579999987654 88876431 1 1112223334888888765443
Q ss_pred CcCeEEEEECCCCceEEe
Q 009910 323 RHAETLIFDILKGEWSVA 340 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~ 340 (522)
...++.+|+....-..+
T Consensus 341 -~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 341 -TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp -EEEEEEEETTCCEEEEC
T ss_pred -EEEEEEEeCCCCeeEEe
Confidence 25688899765544443
No 172
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.57 E-value=3.8 Score=38.38 Aligned_cols=197 Identities=12% Similarity=0.034 Sum_probs=95.3
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEc-ccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccC---------C
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAA-SSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKT---------D 167 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~---------~ 167 (522)
+.+||... .+.+++||+. .+...+ .... ...+...-+.++.. ++.+|+..... .
T Consensus 83 g~l~v~~~------~~~l~~~d~~-g~~~~~~~~~~--------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 83 NQLFVADM------RLGLLVVQTD-GTFEEIAKKDS--------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp SEEEEEET------TTEEEEEETT-SCEEECCSBCT--------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CcEEEEEC------CCCEEEEeCC-CCEEEEEeccC--------CCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 67888763 1368999998 666655 3210 00111112333333 57788765432 1
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-----CC-EEEEEcccCCCCCccCcEEEEEcC-CCcEEEee
Q 009910 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-----SS-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLH 240 (522)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~ 240 (522)
.......+++||+. .+...+... ... ...++.. ++ .||+.... .+.+++||+. +.+.....
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~~~~~--~~~---~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~ 215 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQMIQVDTA--FQF---PNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKK 215 (314)
T ss_dssp TSSSCEEEEEECTT-SCEEEEEEE--ESS---EEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEE
T ss_pred ccCCCCeEEEECCC-CCEEEeccC--CCC---cceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccce
Confidence 11123579999987 665544321 111 1233333 33 56776422 2568899876 44443211
Q ss_pred cCCCCCCC--CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE-EEEEc
Q 009910 241 CTGTGPSP--RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAG 316 (522)
Q Consensus 241 ~~g~~p~~--r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyi~G 316 (522)
.....+.. ..-..++.-.+..+|+.... .+.+.+||+++++....... +. ..-.+++.. +++ ||+..
T Consensus 216 ~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~---~~-~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 216 VWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRIRC---PF-EKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEEEC---SS-SCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCCcEeEEEeC---CC-CCceeEEECCCCCEEEEEe
Confidence 10012211 11123333333447776321 23699999985443222121 22 112222322 444 77765
Q ss_pred ccCCCCCcCeEEEEECCCCc
Q 009910 317 GGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 317 G~~~~~~~~~v~~yd~~~~~ 336 (522)
... +.+++|++....
T Consensus 287 ~~~-----~~l~~~~~~~~g 301 (314)
T 1pjx_A 287 HEN-----NAVWKFEWQRNG 301 (314)
T ss_dssp TTT-----TEEEEEECSSCB
T ss_pred CCC-----CeEEEEeCCCCC
Confidence 433 459999987643
No 173
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.57 E-value=9.3 Score=40.92 Aligned_cols=130 Identities=11% Similarity=0.067 Sum_probs=72.8
Q ss_pred eEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (522)
.+-++.++.||+... .+.++.+|..+. .|+.-......... .........+.+..+++||+...
T Consensus 60 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~----- 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKAR---TSCCDAVNRGVALWGDKVYVGTL----- 125 (668)
T ss_dssp CCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEEBTEEEEECT-----
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccc---cccccCCccceEEECCEEEEEcC-----
Confidence 444678999999864 246899998765 68875432100000 00000011234556888887532
Q ss_pred CCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEe
Q 009910 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 239 (522)
...++.+|.+|++ |+.-.... ........+.++.++.+|+-.+... ...-..++.||+++.+ |+.-
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~P~v~~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDP-AKPYSITGAPRVVKGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCT-TSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeeccCCC-CCcceecCCCEEECCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEec
Confidence 1359999999876 87643210 0111222334556888877432211 1134579999998865 8764
No 174
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.48 E-value=5.6 Score=38.10 Aligned_cols=191 Identities=9% Similarity=0.007 Sum_probs=95.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEE-EeeecCCCCCCCcc--eEEEEECCEEEEEcccCCCCCccCcEEEEEcC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSG--HTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
++.+++.||.+. .+..||..+++-. .+.. +........ ...+..++.+.+.- ....+..||..
T Consensus 47 d~~~l~sg~~Dg------~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~~~s~s~D~~i~~w~-------~~~~~~~~~~~ 112 (343)
T 3lrv_A 47 DKWVCMCRCEDG------ALHFTQLKDSKTITTITT-PNPRTGGEHPAIISRGPCNRLLLLY-------PGNQITILDSK 112 (343)
T ss_dssp EEEEEEEEEETT------EEEEEEESSSSCEEEEEE-ECCCTTCCCCSEEEECSTTEEEEEE-------TTTEEEEEETT
T ss_pred CCCEEEEECCCC------cEEEEECCCCcEEEEEec-CCceeeeeCCceEEecCCCeEEEEE-------ccCceEEeecC
Confidence 456777777653 4777887766422 1111 011110111 11122344555542 22356778877
Q ss_pred CCc-EEEeecCCCCCCCCcceEEEEEC--CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-
Q 009910 233 SLT-WLPLHCTGTGPSPRSNHVAALYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 308 (522)
Q Consensus 233 t~~-W~~~~~~g~~p~~r~~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~- 308 (522)
+.+ ..... .+....-.+++... +..+++.|+.++ .+..||+++..-..+... .....-.+++..
T Consensus 113 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~p 180 (343)
T 3lrv_A 113 TNKVLREIE----VDSANEIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHK 180 (343)
T ss_dssp TCCEEEEEE----CCCSSCEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECC---CSSCCCCEEEECT
T ss_pred CcceeEEee----cCCCCCEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEec---CCCCceEEEEECC
Confidence 766 33332 11111112222222 233677777554 489999988776444322 111112233333
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCCCceE--EeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 009910 309 GTKWYIAGGGSRKKRHAETLIFDILKGEWS--VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (522)
Q Consensus 309 ~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~ 386 (522)
++.+++.|+.++. |.+||+.+.+-. .+. . .-......+.+..+ +..++.|+.+ .|.+||+
T Consensus 181 dg~~lasg~~dg~-----i~iwd~~~~~~~~~~~~---~---~h~~~v~~l~fs~~--g~~l~s~~~~-----~v~iwd~ 242 (343)
T 3lrv_A 181 DSLLLALYSPDGI-----LDVYNLSSPDQASSRFP---V---DEEAKIKEVKFADN--GYWMVVECDQ-----TVVCFDL 242 (343)
T ss_dssp TSCEEEEECTTSC-----EEEEESSCTTSCCEECC---C---CTTSCEEEEEECTT--SSEEEEEESS-----BEEEEET
T ss_pred CCCEEEEEcCCCE-----EEEEECCCCCCCccEEe---c---cCCCCEEEEEEeCC--CCEEEEEeCC-----eEEEEEc
Confidence 6778888876654 999999877643 221 1 01122333444322 3356666632 6999999
Q ss_pred ccCC
Q 009910 387 EKNE 390 (522)
Q Consensus 387 ~~~~ 390 (522)
.+.+
T Consensus 243 ~~~~ 246 (343)
T 3lrv_A 243 RKDV 246 (343)
T ss_dssp TSST
T ss_pred CCCC
Confidence 8765
No 175
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.28 E-value=7.7 Score=42.08 Aligned_cols=224 Identities=7% Similarity=0.027 Sum_probs=109.8
Q ss_pred cEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCC------CcEE-
Q 009910 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTET------ECWS- 186 (522)
Q Consensus 115 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t------~~W~- 186 (522)
.+.+||+.+++++....... . ...+...-++++.. ++.|++ |... . -+++||+.+ ..+.
T Consensus 393 GL~~~~~~~~~~~~~~~~~~--~----~~~~~~~v~~i~~d~~g~lWi-gT~~-~-----Gl~~~~~~~~~~~~~~~~~~ 459 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDN--T----GTYNTNWTYYIFEDTAGQLWI-STCL-G-----GIFVVDKHKLMQSTSGQYIA 459 (758)
T ss_dssp EEEEEETTTTEEEEEEEECC--C------CBSSSEEEEEECTTSEEEE-EESS-S-----CEEEEEHHHHHHCCSSEEEC
T ss_pred cHhhcCcCCCcEEEeecCCC--c----CCCCCceEEEEEEcCCCCEEE-EECC-C-----ceEEEccccccccCCcceec
Confidence 57889998888876643100 0 00111122344443 467777 3321 1 178888653 2221
Q ss_pred --EeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEE
Q 009910 187 --VVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLL 263 (522)
Q Consensus 187 --~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~ly 263 (522)
.......++... -.++... ++.|+++||.. +.+.+||+.+.+++..... .++......++..-.+..|+
T Consensus 460 ~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 460 EQNYSVHNGLSGMF-INQIIPDNEGNVWVLLYNN------KGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp SEEECGGGTCSCSC-EEEEEECTTSCEEEEETTC------SSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEE
T ss_pred ccccccccccccce-eeeEEEcCCCCEEEEccCC------CCcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEE
Confidence 111111232221 2223322 47899876653 2489999999999887421 11111111222222333366
Q ss_pred EEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccC
Q 009910 264 IFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (522)
Q Consensus 264 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 343 (522)
+ |.. +-+.+||++++.++..... .+|. ....+.+.-++.|++... .-+.+||+.+.+......
T Consensus 532 i-gt~------~Gl~~~~~~~~~~~~~~~~-gl~~-~~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~- 594 (758)
T 3ott_A 532 V-GFH------GGVMRINPKDESQQSISFG-SFSN-NEILSMTCVKNSIWVSTT-------NGLWIIDRKTMDARQQNM- 594 (758)
T ss_dssp E-EET------TEEEEECC--CCCCBCCCC-C----CCEEEEEEETTEEEEEES-------SCEEEEETTTCCEEEC---
T ss_pred E-Eec------CceEEEecCCCceEEeccc-CCCc-cceEEEEECCCCEEEECC-------CCeEEEcCCCceeEEecC-
Confidence 5 322 2489999988877665321 1232 222333334778887652 228999999988765432
Q ss_pred CCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 344 p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
+. .. +....... ..+. +.|||.. .+..++|+.-
T Consensus 595 ~~----~~--~~~~~~~~-~~G~-l~fG~~~-----Gl~~f~p~~~ 627 (758)
T 3ott_A 595 TN----KR--FTSLLFDP-KEDC-VYLGGAD-----GFGISHSNLE 627 (758)
T ss_dssp CC----CC--CSEEEEET-TTTE-EEEECBS-----EEEEEEC---
T ss_pred CC----Cc--eeeeEEEC-CCCc-EEEecCC-----ceEEEChhhc
Confidence 11 11 12223322 2234 4578765 4888888754
No 176
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=93.15 E-value=5.8 Score=42.94 Aligned_cols=224 Identities=12% Similarity=0.019 Sum_probs=110.2
Q ss_pred EECCEEEEEcCcCCCCCcccEEEEEcC---CCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCC
Q 009910 96 VIGNKMIVVGGESGNGLLDDVQVLNFD---RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGS 170 (522)
Q Consensus 96 ~~~~~iyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~ 170 (522)
..|+.+|.+-- ........+|+.+.. ...|+.+-...... ...........+ +++.++++... .+.
T Consensus 116 pdG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~-------~~~~~~~~~~~~SPDG~~la~~~~~-~G~ 186 (741)
T 1yr2_A 116 RRGASVFYSWN-SGLMNQSQLLVRPADAPVGTKGRVLLDPNTWA-------KDGATALDAWAASDDGRLLAYSVQD-GGS 186 (741)
T ss_dssp EETTEEEEEEE-CSSCSSCEEEEEETTSCTTCCCEEEECGGGCC-----------EEEEEEEECTTSSEEEEEEEE-TTC
T ss_pred EECCEEEEEEE-cCCCeEEEEEEEcCCccCCCCCEEEECHHHhc-------cCCCEEEEeEEECCCCCEEEEEEcC-CCC
Confidence 34566665532 222224667888876 66777653311100 000011112222 55555554432 233
Q ss_pred CceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCC--------CCccCcEEEEEcCCCcE--EEee
Q 009910 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSLTW--LPLH 240 (522)
Q Consensus 171 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~yd~~t~~W--~~~~ 240 (522)
....++++|+.+++...... +..... ..+...++.++++..+.. ......++++++.+..- ..+.
T Consensus 187 e~~~i~v~dl~tg~~~~~~~----~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~ 261 (741)
T 1yr2_A 187 DWRTVKFVGVADGKPLADEL----KWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF 261 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEE----EEEESC-CCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE
T ss_pred ceEEEEEEECCCCCCCCccC----CCceec-cEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe
Confidence 34579999999998765421 111111 222222233344333221 11245688999876642 2222
Q ss_pred cCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCC--c-EEEeeeCCCCCCCccceEEEEECCEEEEEc
Q 009910 241 CTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM--I-WTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 316 (522)
Q Consensus 241 ~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~-W~~~~~~~~~p~~r~~~~~~~~~~~iyi~G 316 (522)
. ....+......... +++.|++.. .......++++.+|+.+. . |+.+... ..... ......++.||+..
T Consensus 262 ~--~~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~-~~~~~dg~~l~~~s 334 (741)
T 1yr2_A 262 A--TPELPKRGHGASVSSDGRWVVITS-SEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQW-DFVDGVGDQLWFVS 334 (741)
T ss_dssp C--CTTCTTCEEEEEECTTSCEEEEEE-ECTTCSCCEEEEEEEETTEECCCEEEECS---SSSCE-EEEEEETTEEEEEE
T ss_pred c--cCCCCeEEEEEEECCCCCEEEEEE-EccCCCcceEEEEECCCCCCcccEEecCC---CCceE-EEEeccCCEEEEEE
Confidence 0 11122223333333 344344433 222223568999999877 6 8887643 11111 12223477888775
Q ss_pred ccCCCCCcCeEEEEECCC--CceEEecc
Q 009910 317 GGSRKKRHAETLIFDILK--GEWSVAIT 342 (522)
Q Consensus 317 G~~~~~~~~~v~~yd~~~--~~W~~~~~ 342 (522)
... .....++.+|+.+ ..|+.+..
T Consensus 335 ~~~--~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 335 GDG--APLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp CTT--CTTCEEEEEECSSSSCEEEEEEC
T ss_pred CCC--CCCCEEEEEeCCCCccccEEEec
Confidence 432 2346799999988 57988763
No 177
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.12 E-value=9.3 Score=40.78 Aligned_cols=191 Identities=11% Similarity=0.082 Sum_probs=91.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.+++.|+.+ ..+.++|+.+..-...-. .+. . .-.+++. -++..++.|+.+. .+.
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~----------~h~-~-~v~~~~~s~~~~~l~s~s~D~------~i~ 497 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFV----------GHT-K-DVLSVAFSLDNRQIVSASRDR------TIK 497 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEE----------CCS-S-CEEEEEECTTSSCEEEEETTS------CEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEEe----------CCC-C-CEEEEEEeCCCCEEEEEeCCC------EEE
Confidence 45667777644 468889988764322211 000 1 1112222 2456666676542 377
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE-C---CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcce
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-S---SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 252 (522)
++|.....-..+.. .....+..-.++.+ . ..+++.|+.+. .+.+||+.+.+-...- ... ...-.
T Consensus 498 iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~---~~h-~~~v~ 565 (694)
T 3dm0_A 498 LWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTL---AGH-TGYVS 565 (694)
T ss_dssp EECTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEE---CCC-SSCEE
T ss_pred EEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEE---cCC-CCCEE
Confidence 77876553222221 01111111122222 2 24566666543 4888999876544332 111 11122
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEEC
Q 009910 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 332 (522)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~ 332 (522)
+++...+..+++.|+.++ .+.+||+.+..- +... .....-.+++...+..+++++.+ ..+.+||+
T Consensus 566 ~v~~spdg~~l~sg~~Dg-----~i~iwd~~~~~~--~~~~---~~~~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~ 630 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDG-----VVLLWDLAEGKK--LYSL---EANSVIHALCFSPNRYWLCAATE-----HGIKIWDL 630 (694)
T ss_dssp EEEECTTSSEEEEEETTS-----BCEEEETTTTEE--EECC---BCSSCEEEEEECSSSSEEEEEET-----TEEEEEET
T ss_pred EEEEeCCCCEEEEEeCCC-----eEEEEECCCCce--EEEe---cCCCcEEEEEEcCCCcEEEEEcC-----CCEEEEEC
Confidence 333333433777777653 488999877642 2222 11112233333334444444433 23888998
Q ss_pred CCCceE
Q 009910 333 LKGEWS 338 (522)
Q Consensus 333 ~~~~W~ 338 (522)
.+.+-.
T Consensus 631 ~~~~~~ 636 (694)
T 3dm0_A 631 ESKSIV 636 (694)
T ss_dssp TTTEEE
T ss_pred CCCCCh
Confidence 876543
No 178
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.11 E-value=6.3 Score=37.69 Aligned_cols=192 Identities=11% Similarity=0.069 Sum_probs=94.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++.+++.||.+ ..+.+||..+.+-...-..... .. ....+. ...+..++.|.+.-.. ..+..
T Consensus 47 d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~~~~v--~~--~~~~~~--~~s~s~D~~i~~w~~~-------~~~~~ 108 (343)
T 3lrv_A 47 DKWVCMCRCED-----GALHFTQLKDSKTITTITTPNP--RT--GGEHPA--IISRGPCNRLLLLYPG-------NQITI 108 (343)
T ss_dssp EEEEEEEEEET-----TEEEEEEESSSSCEEEEEEECC--CT--TCCCCS--EEEECSTTEEEEEETT-------TEEEE
T ss_pred CCCEEEEECCC-----CcEEEEECCCCcEEEEEecCCc--ee--eeeCCc--eEEecCCCeEEEEEcc-------CceEE
Confidence 45677777755 4577888876532111110000 00 001111 2222234555554221 24667
Q ss_pred EECCCCc-EEEeeecCCCCCCCcceEEEE-E--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceE
Q 009910 178 FDTETEC-WSVVEAKGDIPVARSGHTVVR-A--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (522)
Q Consensus 178 yd~~t~~-W~~~~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 253 (522)
||..+.+ ..... ......-.+++. - ++.+++.|+.++ .+.+||+.+.+-.... .......-.+
T Consensus 109 ~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~dg------~i~~wd~~~~~~~~~~---~~~~~~~i~~ 175 (343)
T 3lrv_A 109 LDSKTNKVLREIE----VDSANEIIYMYGHNEVNTEYFIWADNRG------TIGFQSYEDDSQYIVH---SAKSDVEYSS 175 (343)
T ss_dssp EETTTCCEEEEEE----CCCSSCEEEEECCC---CCEEEEEETTC------CEEEEESSSSCEEEEE---CCCSSCCCCE
T ss_pred eecCCcceeEEee----cCCCCCEEEEEcCCCCCCCEEEEEeCCC------cEEEEECCCCcEEEEE---ecCCCCceEE
Confidence 7877776 33332 111111112222 1 466777777554 3889999887764443 1122222334
Q ss_pred EEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEE--EeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEE
Q 009910 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLI 329 (522)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~ 329 (522)
++...+..+++.|+.++ .+.+||+.+..-. .+.. ... ....++.+ ++..++.|+ ++ .+.+
T Consensus 176 ~~~~pdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~~----~h~-~~v~~l~fs~~g~~l~s~~-~~-----~v~i 239 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDG-----ILDVYNLSSPDQASSRFPV----DEE-AKIKEVKFADNGYWMVVEC-DQ-----TVVC 239 (343)
T ss_dssp EEECTTSCEEEEECTTS-----CEEEEESSCTTSCCEECCC----CTT-SCEEEEEECTTSSEEEEEE-SS-----BEEE
T ss_pred EEECCCCCEEEEEcCCC-----EEEEEECCCCCCCccEEec----cCC-CCEEEEEEeCCCCEEEEEe-CC-----eEEE
Confidence 44555554777777654 5999999876532 2211 011 11222233 556666666 32 4899
Q ss_pred EECCCCc
Q 009910 330 FDILKGE 336 (522)
Q Consensus 330 yd~~~~~ 336 (522)
+|+.+.+
T Consensus 240 wd~~~~~ 246 (343)
T 3lrv_A 240 FDLRKDV 246 (343)
T ss_dssp EETTSST
T ss_pred EEcCCCC
Confidence 9987754
No 179
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.03 E-value=7.3 Score=38.20 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=91.7
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 176 (522)
+++.++.|+.+ ..+.+||+.+.+-...-. .....-.+++.. ++..++.|+.+ ..+.
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~p~~~~l~s~s~d------~~v~ 190 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQ------------GHEQDIYSLDYFPSGDKLVSGSGD------RTVR 190 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------SEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEc------------cCCCCEEEEEEcCCCCEEEEecCC------CcEE
Confidence 45667777644 468899998765432211 011111222222 45555666653 2488
Q ss_pred EEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCC---CCCCCcc
Q 009910 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT---GPSPRSN 251 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~---~p~~r~~ 251 (522)
.+|+.+.+....-. .. ..-.+++.. ++++++.|+.+. .+.+||+.+..-...-.... ......-
T Consensus 191 iwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 191 IWDLRTGQCSLTLS---IE--DGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp EEETTTTEEEEEEE---CS--SCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred EEECCCCeeEEEEE---cC--CCcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence 89998887543321 11 111222232 567888887654 37889988765433210000 0011111
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC---CCC-----CCCccceEEEEE-CCEEEEEcccCCCC
Q 009910 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR---GFH-----PSPRAGCCGVLC-GTKWYIAGGGSRKK 322 (522)
Q Consensus 252 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~-----p~~r~~~~~~~~-~~~iyi~GG~~~~~ 322 (522)
.+++...+..+++.|+.++ .+.+||+.+..-...... +.. .....-.+++.. +++.++.|+.++
T Consensus 260 ~~v~~~~~g~~l~s~s~d~-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-- 332 (393)
T 1erj_A 260 YSVVFTRDGQSVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-- 332 (393)
T ss_dssp EEEEECTTSSEEEEEETTS-----EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS--
T ss_pred EEEEECCCCCEEEEEeCCC-----EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC--
Confidence 2233333333667776543 478888764321110000 000 000001112222 456667777554
Q ss_pred CcCeEEEEECCCCce
Q 009910 323 RHAETLIFDILKGEW 337 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W 337 (522)
.+.++|+.+.+-
T Consensus 333 ---~v~iwd~~~~~~ 344 (393)
T 1erj_A 333 ---GVLFWDKKSGNP 344 (393)
T ss_dssp ---EEEEEETTTCCE
T ss_pred ---eEEEEECCCCeE
Confidence 488999887653
No 180
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=92.99 E-value=7.3 Score=40.12 Aligned_cols=147 Identities=7% Similarity=0.022 Sum_probs=71.7
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
+++.++.|+.+ ..+..||.....-..+.. ..... .+++. -++++++.|+.+. .+.+||....
T Consensus 396 dg~~l~~~~~d------~~v~~~~~~~~~~~~~~~----~~~~v-~~~~~s~d~~~l~~~~~d~------~v~~w~~~~~ 458 (577)
T 2ymu_A 396 DGQTIASASDD------KTVKLWNRNGQLLQTLTG----HSSSV-WGVAFSPDDQTIASASDDK------TVKLWNRNGQ 458 (577)
T ss_dssp TSSCEEEEETT------SEEEEECTTCCEEEEEEC----CSSCE-EEEEECTTSSEEEEEETTS------EEEEEETTSC
T ss_pred CCCEEEEEeCC------CEEEEEeCCCCEEEEecC----CCCCe-EEEEECCCCCEEEEEcCCC------EEEEEECCCC
Confidence 45566666643 247777754443333321 11111 12222 2566777766543 3778887655
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iy 313 (522)
.-..+. .. ...-.+++...+..+++.|+.++ .+.+||.....-..+... ... -.+++.. +++++
T Consensus 459 ~~~~~~---~~--~~~v~~~~~spd~~~las~~~d~-----~i~iw~~~~~~~~~~~~h----~~~-v~~l~~s~dg~~l 523 (577)
T 2ymu_A 459 LLQTLT---GH--SSSVRGVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQTLTGH----SSS-VRGVAFSPDGQTI 523 (577)
T ss_dssp EEEEEE---CC--SSCEEEEEECTTSCEEEEEETTS-----EEEEEETTSCEEEEEECC----SSC-EEEEEECTTSSCE
T ss_pred EEEEEc---CC--CCCEEEEEEcCCCCEEEEEeCCC-----EEEEEcCCCCEEEEEeCC----CCC-EEEEEEcCCCCEE
Confidence 444443 11 11122333444443666666543 478888654433333221 111 1122222 66777
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEE
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
+.|+.++ .|.+||.....-..
T Consensus 524 ~s~~~dg-----~v~lwd~~~~~~~~ 544 (577)
T 2ymu_A 524 ASASDDK-----TVKLWNRNGQLLQT 544 (577)
T ss_dssp EEEETTS-----EEEEECTTSCEEEE
T ss_pred EEEECcC-----EEEEEeCCCCEEEE
Confidence 7777654 38888875544443
No 181
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=92.94 E-value=11 Score=40.12 Aligned_cols=188 Identities=9% Similarity=0.090 Sum_probs=92.5
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++++++.|+.+. .+.++|+.+.+-...-. - ....-.+++. -++..++.|+.+. .+.++|....
T Consensus 441 ~g~~l~sgs~Dg------~v~vwd~~~~~~~~~~~---~-h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWDG------ELRLWDLAAGVSTRRFV---G-HTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE---C-CSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcceeEEe---C-CCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCC
Confidence 566777777642 48889998875432211 0 1111122222 2466677776654 3677776544
Q ss_pred cEEEeecCCCCCCCCcceEEEEE-CC--cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--C
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALY-DD--KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G 309 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~-~~--~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~ 309 (522)
.-..+.. .....+....++.+ .+ ..+++.|+.++ .+.+||+.+..-...-. .......++.+ +
T Consensus 505 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~-----~h~~~v~~v~~spd 572 (694)
T 3dm0_A 505 CKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRSTLA-----GHTGYVSTVAVSPD 572 (694)
T ss_dssp EEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEEEC-----CCSSCEEEEEECTT
T ss_pred cceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEEEc-----CCCCCEEEEEEeCC
Confidence 3222221 11111111222222 22 12566666543 48899987765432211 11111222222 6
Q ss_pred CEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 310 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 310 ~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
+++++.|+.++. |.++|+.+.+-.. .... ......+.+..+ +.+++.+.. +.|.+||+++.
T Consensus 573 g~~l~sg~~Dg~-----i~iwd~~~~~~~~--~~~~-----~~~v~~~~~sp~--~~~l~~~~~-----~~i~iwd~~~~ 633 (694)
T 3dm0_A 573 GSLCASGGKDGV-----VLLWDLAEGKKLY--SLEA-----NSVIHALCFSPN--RYWLCAATE-----HGIKIWDLESK 633 (694)
T ss_dssp SSEEEEEETTSB-----CEEEETTTTEEEE--CCBC-----SSCEEEEEECSS--SSEEEEEET-----TEEEEEETTTT
T ss_pred CCEEEEEeCCCe-----EEEEECCCCceEE--EecC-----CCcEEEEEEcCC--CcEEEEEcC-----CCEEEEECCCC
Confidence 778888886654 8889988765322 2111 112333444322 234444432 24888988776
Q ss_pred C
Q 009910 390 E 390 (522)
Q Consensus 390 ~ 390 (522)
+
T Consensus 634 ~ 634 (694)
T 3dm0_A 634 S 634 (694)
T ss_dssp E
T ss_pred C
Confidence 5
No 182
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=92.87 E-value=7.2 Score=37.69 Aligned_cols=147 Identities=16% Similarity=0.098 Sum_probs=77.0
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
+..++.|+.+ ..+..+|+.+.+-...-. ..... -.++... ++.+++.|+.+. .+.+||+.+
T Consensus 166 ~~~l~t~s~D------~~v~lwd~~~~~~~~~~~---~h~~~-v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~ 229 (354)
T 2pbi_B 166 DMQILTASGD------GTCALWDVESGQLLQSFH---GHGAD-VLCLDLAPSETGNTFVSGGCDK------KAMVWDMRS 229 (354)
T ss_dssp SSEEEEEETT------SEEEEEETTTCCEEEEEE---CCSSC-EEEEEECCCSSCCEEEEEETTS------CEEEEETTT
T ss_pred CCEEEEEeCC------CcEEEEeCCCCeEEEEEc---CCCCC-eEEEEEEeCCCCCEEEEEeCCC------eEEEEECCC
Confidence 4445555543 248889998876433221 01111 1122221 356778887654 388999988
Q ss_pred CcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCE
Q 009910 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK 311 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~ 311 (522)
.+....- ... ...-.+++...+..+++.|+.++ .+..||+.+..-...-.. .........+.+ +++
T Consensus 230 ~~~~~~~---~~h-~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 230 GQCVQAF---ETH-ESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGR 297 (354)
T ss_dssp CCEEEEE---CCC-SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSS
T ss_pred CcEEEEe---cCC-CCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCC
Confidence 7654432 111 11112233333333677777654 488999877643322211 111222233333 577
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCc
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
+++.|+.++. +.+||+.+.+
T Consensus 298 ~l~~g~~d~~-----i~vwd~~~~~ 317 (354)
T 2pbi_B 298 LLFAGYNDYT-----INVWDVLKGS 317 (354)
T ss_dssp EEEEEETTSC-----EEEEETTTCS
T ss_pred EEEEEECCCc-----EEEEECCCCc
Confidence 7777776544 8999987654
No 183
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=92.84 E-value=6.4 Score=37.04 Aligned_cols=149 Identities=10% Similarity=0.099 Sum_probs=74.2
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
++.+++.|+.+. .+..++........... ..............+..++.|+.+. .+.++|.....
T Consensus 97 dg~~l~s~~~d~------~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~ 161 (340)
T 4aow_A 97 DGQFALSGSWDG------TLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVC 161 (340)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCE
T ss_pred CCCEEEEEcccc------cceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCc
Confidence 466677777542 47778888776554442 1212112122222455666666543 36677765543
Q ss_pred EEEeecCCCCCCCCcceEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE
Q 009910 236 WLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 311 (522)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~ 311 (522)
-.... ..........+.+ ....+++.|+.+. .+..||..+......... ....-.+++.. +++
T Consensus 162 ~~~~~----~~~~~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~----h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 162 KYTVQ----DESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG----HTGYLNTVTVSPDGS 228 (340)
T ss_dssp EEEEC----SSSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEECC----CSSCEEEEEECTTSS
T ss_pred eEEEE----eccccCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEecC----CCCcEEEEEECCCCC
Confidence 32222 1111111112222 2223556665543 488899887654333211 11111122222 567
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCce
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGEW 337 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~W 337 (522)
+++.|+.++ .+.+||+.+.+-
T Consensus 229 ~l~s~s~Dg-----~i~iwd~~~~~~ 249 (340)
T 4aow_A 229 LCASGGKDG-----QAMLWDLNEGKH 249 (340)
T ss_dssp EEEEEETTC-----EEEEEETTTTEE
T ss_pred EEEEEeCCC-----eEEEEEeccCce
Confidence 788887664 488999877653
No 184
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=92.84 E-value=8.5 Score=38.46 Aligned_cols=160 Identities=9% Similarity=-0.011 Sum_probs=81.0
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcE
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W 236 (522)
+++++.|+.+. .+.+||+.+.+....-.. -........+.. ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 210 ~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRDE------HIKISHYPQCFIVDKWLF--GHKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETTS------CEEEEEESCTTCEEEECC--CCSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred CcEEEEEcCCC------cEEEEECCCCceeeeeec--CCCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence 77888887642 488888877664332110 011111222223 67777777744 3588899988764
Q ss_pred EEeecCCC----------C-----------CCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEc--C-CCcEEEee
Q 009910 237 LPLHCTGT----------G-----------PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDF--E-TMIWTRIK 291 (522)
Q Consensus 237 ~~~~~~g~----------~-----------p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~--~-~~~W~~~~ 291 (522)
...-..+. . +....-..++... ++.+++.++.+ +.+.+|++ . ...+..+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCceeecc
Confidence 33221000 0 1111112222333 44344433222 35888888 3 34555555
Q ss_pred eCCCCCCCccceEEEEECCEEEEEcccCCC----CCcCeEEEEECCCCceEE
Q 009910 292 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRK----KRHAETLIFDILKGEWSV 339 (522)
Q Consensus 292 ~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~----~~~~~v~~yd~~~~~W~~ 339 (522)
.. +....-.+.+...+.+++..+.... ...-++|.++..+++|+.
T Consensus 350 ~~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 350 II---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp EE---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred Ee---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 43 1222223444456777776654321 222367888888888863
No 185
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=92.83 E-value=8.6 Score=39.57 Aligned_cols=182 Identities=7% Similarity=0.020 Sum_probs=87.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
+++.++.|+.+. .+..||.....-..+.. .. ... .+++. -+++.++.|+.+. .+.+||....
T Consensus 355 ~g~~l~~~~~dg------~v~~~~~~~~~~~~~~~---~~-~~v-~~~~~s~dg~~l~~~~~d~------~v~~~~~~~~ 417 (577)
T 2ymu_A 355 DGQTIASASDDK------TVKLWNRNGQLLQTLTG---HS-SSV-RGVAFSPDGQTIASASDDK------TVKLWNRNGQ 417 (577)
T ss_dssp TSSEEEEEETTS------EEEEEETTCCEEEEEEC---CS-SCE-EEEEECTTSSCEEEEETTS------EEEEECTTCC
T ss_pred CCCEEEEEeCCC------EEEEEcCCCCEEEEecC---CC-CCe-EEEEECCCCCEEEEEeCCC------EEEEEeCCCC
Confidence 456666666432 47778865544444331 11 111 12222 2466667766542 4677776544
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iy 313 (522)
.-..+. ... .. -.+++...+..+++.++.++ .+..||.....-..+... ...-.+++.. +++++
T Consensus 418 ~~~~~~---~~~-~~-v~~~~~s~d~~~l~~~~~d~-----~v~~w~~~~~~~~~~~~~-----~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 418 LLQTLT---GHS-SS-VWGVAFSPDDQTIASASDDK-----TVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EEEEEE---CCS-SC-EEEEEECTTSSEEEEEETTS-----EEEEEETTSCEEEEEECC-----SSCEEEEEECTTSCEE
T ss_pred EEEEec---CCC-CC-eEEEEECCCCCEEEEEcCCC-----EEEEEECCCCEEEEEcCC-----CCCEEEEEEcCCCCEE
Confidence 333332 111 11 11233333333666665443 578888765544444321 1111222222 67777
Q ss_pred EEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 314 i~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
+.|+.++ .+.++|.....-..+... ......+.+..++ .+++.|+.++ .|.+||..
T Consensus 483 as~~~d~-----~i~iw~~~~~~~~~~~~h-------~~~v~~l~~s~dg--~~l~s~~~dg----~v~lwd~~ 538 (577)
T 2ymu_A 483 ASASDDK-----TVKLWNRNGQLLQTLTGH-------SSSVRGVAFSPDG--QTIASASDDK----TVKLWNRN 538 (577)
T ss_dssp EEEETTS-----EEEEEETTSCEEEEEECC-------SSCEEEEEECTTS--SCEEEEETTS----EEEEECTT
T ss_pred EEEeCCC-----EEEEEcCCCCEEEEEeCC-------CCCEEEEEEcCCC--CEEEEEECcC----EEEEEeCC
Confidence 8777654 388888655433333211 1112333443333 3566676543 47777753
No 186
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=92.72 E-value=6.5 Score=36.78 Aligned_cols=150 Identities=13% Similarity=0.136 Sum_probs=70.6
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCC-------cEEEeeecCCCCCCCcceEEEEE-C--CEEEEEcccCCCCCccCcE
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETE-------CWSVVEAKGDIPVARSGHTVVRA-S--SVLILFGGEDGKRRKLNDL 226 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~-------~W~~~~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v 226 (522)
+.+++.|+.+. .+..||+.+. .|..+.... .....-.+++.. + +.+++.|+.++ .+
T Consensus 71 ~~~l~s~~~dg------~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg------~v 136 (351)
T 3f3f_A 71 GRIIASASYDK------TVKLWEEDPDQEECSGRRWNKLCTLN--DSKGSLYSVKFAPAHLGLKLACLGNDG------IL 136 (351)
T ss_dssp CSEEEEEETTS------CEEEEEECTTSCTTSSCSEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTC------EE
T ss_pred CCEEEEEcCCC------eEEEEecCCCcccccccCcceeeeec--ccCCceeEEEEcCCCCCcEEEEecCCC------cE
Confidence 66777777642 3677777654 344443211 111111222222 2 56677776543 47
Q ss_pred EEEEcCCCc----EEEe---ecCCCCC--CCCcceEEEEEC----CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC
Q 009910 227 HMFDLKSLT----WLPL---HCTGTGP--SPRSNHVAALYD----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 293 (522)
Q Consensus 227 ~~yd~~t~~----W~~~---~~~g~~p--~~r~~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 293 (522)
.+||+.+.+ |... ......+ ......+..... +. +++.|+.++ .+..++........+...
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~-----~~~~~~~~~~~~~~~~~~ 210 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQ-----AIIYQRGKDGKLHVAAKL 210 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTE-----EEEEEECTTSCEEEEEEC
T ss_pred EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCC-----cEEEEccCCCceeeeeec
Confidence 888886643 3221 1000111 111112222222 44 566665433 345555566666555443
Q ss_pred CCCCCCccc-eEEEEE-CC----EEEEEcccCCCCCcCeEEEEECCC
Q 009910 294 GFHPSPRAG-CCGVLC-GT----KWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 294 ~~~p~~r~~-~~~~~~-~~----~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
+..... .+++.. ++ .+++.|+.++. +.+||+.+
T Consensus 211 ---~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-----i~iwd~~~ 249 (351)
T 3f3f_A 211 ---PGHKSLIRSISWAPSIGRWYQLIATGCKDGR-----IRIFKITE 249 (351)
T ss_dssp ---CCCCSCEEEEEECCCSSCSSEEEEEEETTSC-----EEEEEEEE
T ss_pred ---CCCCcceeEEEECCCCCCcceEEEEEcCCCe-----EEEEeCCC
Confidence 111112 222333 33 78888886654 77777654
No 187
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=92.70 E-value=4.3 Score=38.21 Aligned_cols=212 Identities=13% Similarity=-0.018 Sum_probs=103.6
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.||+..-.. ..+++||+.+++..... .+. +. .+++. -++++|+.. .+.+++||+++.
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~----~~~-~~-~~i~~~~dG~l~v~~--------~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFTKQVQRVT----MDA-PV-SSVALRQSGGYVATI--------GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEEEE----CSS-CE-EEEEEBTTSSEEEEE--------TTEEEEEETTTT
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEe----CCC-ce-EEEEECCCCCEEEEE--------CCeEEEEECCCC
Confidence 47888875432 35999999988765543 221 11 23333 246666642 146899999999
Q ss_pred cEEEeecCCC-CCCCCcceEEEEECCcEEEEEcCCCC------CCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE
Q 009910 235 TWLPLHCTGT-GPSPRSNHVAALYDDKNLLIFGGSSK------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (522)
Q Consensus 235 ~W~~~~~~g~-~p~~r~~~~~~~~~~~~lyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~ 307 (522)
+++.+..... .+..+.. ..+.-.+..+|+-.-... ......++++++.. ....+.... .. ..+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~--~~---pngi~~ 156 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQV--DI---SNGLDW 156 (297)
T ss_dssp EEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEE--SB---EEEEEE
T ss_pred cEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecc--cc---ccceEE
Confidence 8887753211 1212222 223333333666321110 11234688998753 333332210 11 122333
Q ss_pred E--CCEEEEEcccCCCCCcCeEEEEEC--CCCceEE---eccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCc
Q 009910 308 C--GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSV---AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQ 380 (522)
Q Consensus 308 ~--~~~iyi~GG~~~~~~~~~v~~yd~--~~~~W~~---~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~ 380 (522)
. +..+|+..... ..|++||. .+.+... +...+.. ......+++..+ +.||+..... +.
T Consensus 157 spdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~----~~~p~g~~~d~~--G~lwva~~~~----~~ 221 (297)
T 3g4e_A 157 SLDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKE----EQIPDGMCIDAE--GKLWVACYNG----GR 221 (297)
T ss_dssp CTTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGG----GCEEEEEEEBTT--SCEEEEEETT----TE
T ss_pred cCCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCC----CCCCCeeEECCC--CCEEEEEcCC----CE
Confidence 2 34688876543 45888876 4554421 1111110 011122334322 3577653221 25
Q ss_pred EEEEEcccCCccccccCCCCCCCCceEEeec
Q 009910 381 VEVLSIEKNESSMGRRSTPNAKGPGQLLFEK 411 (522)
Q Consensus 381 v~~y~~~~~~w~~~~~~~~~~~~~~~~~fgg 411 (522)
|.+||+++.+..... ..+. ..+..+.|+|
T Consensus 222 v~~~d~~tG~~~~~i-~~p~-~~~t~~~f~g 250 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTV-KLPV-DKTTSCCFGG 250 (297)
T ss_dssp EEEECTTTCCEEEEE-ECSS-SBEEEEEEES
T ss_pred EEEEcCCCceEEEEE-ECCC-CCceEEEEeC
Confidence 999999876533321 1111 3345566775
No 188
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=92.69 E-value=6.5 Score=36.76 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=55.7
Q ss_pred CEEEEEcccCCCCCccCcEEEEEcCCC--cEEEeecCCCCCCCCc-ceEEEEECC---cEEEEEcCCCCCCCCCcEEEEE
Q 009910 208 SVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRS-NHVAALYDD---KNLLIFGGSSKSKTLNDLYSLD 281 (522)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~-~~~~~~~~~---~~lyv~GG~~~~~~~~~v~~yd 281 (522)
+++++.|+.+.. +.+||..+. .|.... .+..-.. -.+++...+ ..+++.|+.++ .+.++|
T Consensus 170 ~~~l~sgs~D~~------v~lwd~~~~~~~~~~~~---~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-----~v~iWd 235 (297)
T 2pm7_B 170 SRKFVTGGADNL------VKIWKYNSDAQTYVLES---TLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-----TCIIWT 235 (297)
T ss_dssp CCEEEEEETTSC------EEEEEEETTTTEEEEEE---EECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEE
T ss_pred cceEEEEcCCCc------EEEEEEcCCCceEEEEE---EecCCCCceEEEEECCCCCCceEEEEEECCC-----cEEEEE
Confidence 356777776543 666776553 354443 1111111 112222232 23677776654 477788
Q ss_pred cCC--CcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC-CCceEEecc
Q 009910 282 FET--MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAIT 342 (522)
Q Consensus 282 ~~~--~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~-~~~W~~~~~ 342 (522)
+.+ ..|....... ......-.+++.. ++++++.||.++. +.+++.. ...|..+..
T Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~las~~~D~~-----v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNK-----VTLWKENLEGKWEPAGE 294 (297)
T ss_dssp ESSTTSCCEEEESSS-SCCSSCEEEEEECSSSCCEEEEETTSC-----EEEEEECTTSCEEEC--
T ss_pred eCCCCCccceeeeec-ccCCCcEEEEEECCCCCEEEEEcCCCc-----EEEEEECCCCcEEeccc
Confidence 765 3455432210 0111112222222 6677777876654 6666654 467887653
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=92.67 E-value=6.5 Score=36.73 Aligned_cols=187 Identities=9% Similarity=0.039 Sum_probs=95.8
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
+++++.|... +.++++|..+. .|+.-... .....+..+.-+++|++.+. ..++
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~------------~~~~~~~~~~pdG~ilvs~~--------~~V~ 59 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEK------------GWECNSVAATKAGEILFSYS--------KGAK 59 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEECCT------------TCCCCEEEECTTSCEEEECB--------SEEE
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCc------------cCCCcCeEECCCCCEEEeCC--------CCEE
Confidence 5677776533 67889998665 47654321 01122333334777887321 2499
Q ss_pred EEECCCCc--EEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCc-EEEeecCCCC--CCCCc
Q 009910 177 TFDTETEC--WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTG--PSPRS 250 (522)
Q Consensus 177 ~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~--p~~r~ 250 (522)
.||+ +++ |+.-. +.....+++... ++++++..... ...++.+|++... |+.... +.. +....
T Consensus 60 ~~d~-~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~-~~~~~~~~~~ 127 (276)
T 3no2_A 60 MITR-DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFE-TGIERPHAQF 127 (276)
T ss_dssp EECT-TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEEC-CSCSSGGGSC
T ss_pred EECC-CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEecc-CCCCcccccc
Confidence 9999 544 76432 211122333333 56666653321 2357888875442 443211 111 11112
Q ss_pred ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC-cEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEE
Q 009910 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 328 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~ 328 (522)
.......++. +++.... ...+.+||++.+ .|+.-.. ..| +++... ++.++|.+... ..+.
T Consensus 128 ~~v~~~~~G~-~lv~~~~-----~~~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~~~g~~~v~~~~~-----~~v~ 189 (276)
T 3no2_A 128 RQINKNKKGN-YLVPLFA-----TSEVREIAPNGQLLNSVKLS--GTP-----FSSAFLDNGDCLVACGDA-----HCFV 189 (276)
T ss_dssp SCCEECTTSC-EEEEETT-----TTEEEEECTTSCEEEEEECS--SCC-----CEEEECTTSCEEEECBTT-----SEEE
T ss_pred cCceECCCCC-EEEEecC-----CCEEEEECCCCCEEEEEECC--CCc-----cceeEcCCCCEEEEeCCC-----CeEE
Confidence 2223334555 5554332 246999998733 3553321 111 234444 67888877643 3499
Q ss_pred EEECCCC--ceEEe
Q 009910 329 IFDILKG--EWSVA 340 (522)
Q Consensus 329 ~yd~~~~--~W~~~ 340 (522)
.+|+.+. .|+.-
T Consensus 190 ~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 190 QLNLESNRIVRRVN 203 (276)
T ss_dssp EECTTTCCEEEEEE
T ss_pred EEeCcCCcEEEEec
Confidence 9999855 46653
No 190
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=92.66 E-value=6.7 Score=36.80 Aligned_cols=145 Identities=13% Similarity=0.051 Sum_probs=72.3
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-E-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-W-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (522)
+.+.++|+.+.+-...-.. ....-.-+.++. - ++.+|+.+... ..++++|+.+.+-...-.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~- 73 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITI----------ADAGPTPMVPMVAPGGRIAYATVNKS------ESLVKIDLVTGETLGRID- 73 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC----------TTCTTCCCCEEECTTSSEEEEEETTT------TEEEEEETTTCCEEEEEE-
T ss_pred CeEEEEECCCCcEEEEEEc----------CCCCCCccceEEcCCCCEEEEEeCCC------CeEEEEECCCCCeEeeEE-
Confidence 5789999988754432221 010000122222 2 34777776432 359999999887543221
Q ss_pred CCCCCC----CcceEEEEE-CC-EEEEEcccC---CCCC--ccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CC
Q 009910 192 GDIPVA----RSGHTVVRA-SS-VLILFGGED---GKRR--KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DD 259 (522)
Q Consensus 192 ~~~p~~----r~~~~~~~~-~~-~iyv~GG~~---~~~~--~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~ 259 (522)
.+.. ..-+.++.. ++ .+|+..... .... ..+.+++||+.+.+....-..+.. -..++.. ++
T Consensus 74 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg 146 (337)
T 1pby_B 74 --LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWARDG 146 (337)
T ss_dssp --CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECTTS
T ss_pred --cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEECCCC
Confidence 1110 011223332 34 677663210 0100 136799999988765543211111 1223333 44
Q ss_pred cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEe
Q 009910 260 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (522)
Q Consensus 260 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 290 (522)
+.+|+.+ +.++++|+.+++-...
T Consensus 147 ~~l~~~~--------~~i~~~d~~~~~~~~~ 169 (337)
T 1pby_B 147 SKLYGLG--------RDLHVMDPEAGTLVED 169 (337)
T ss_dssp SCEEEES--------SSEEEEETTTTEEEEE
T ss_pred CEEEEeC--------CeEEEEECCCCcEeee
Confidence 4466652 4699999988765433
No 191
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=92.34 E-value=2.5 Score=40.26 Aligned_cols=194 Identities=10% Similarity=0.074 Sum_probs=95.0
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEEC----CEEEEEcccCCCCCccCcEEEEEcC
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
..+++.|+... ....+..||..+++...... ......-.+++... +.+++.|+.++ .+.+||+.
T Consensus 31 ~~l~~~~s~~~---~d~~v~iw~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~ 98 (357)
T 3i2n_A 31 AKFVTMGNFAR---GTGVIQLYEIQHGDLKLLRE---IEKAKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLE 98 (357)
T ss_dssp SEEEEEEC--C---CCEEEEEEEECSSSEEEEEE---EEESSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTT
T ss_pred ceEEEecCccC---CCcEEEEEeCCCCcccceee---ecccCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCC
Confidence 36666665421 12358888988887654432 11111122222222 47777776543 37888887
Q ss_pred CCc--EEEeecCCCCCCCCcceEEEE-------ECCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEeeeCCCCCCCcc
Q 009910 233 SLT--WLPLHCTGTGPSPRSNHVAAL-------YDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRA 301 (522)
Q Consensus 233 t~~--W~~~~~~g~~p~~r~~~~~~~-------~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~p~~r~ 301 (522)
+.+ -..+. ....+ -.++.. -++. +++.|+.++ .+.+||+.+.. ...+..... ...+.
T Consensus 99 ~~~~~~~~~~---~~~~~--v~~~~~~~~~~~s~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~-~~~~~ 166 (357)
T 3i2n_A 99 APEMPVYSVK---GHKEI--INAIDGIGGLGIGEGAP-EIVTGSRDG-----TVKVWDPRQKDDPVANMEPVQG-ENKRD 166 (357)
T ss_dssp SCSSCSEEEC---CCSSC--EEEEEEESGGGCC-CCC-EEEEEETTS-----CEEEECTTSCSSCSEEECCCTT-SCCCC
T ss_pred CCCccEEEEE---ecccc--eEEEeeccccccCCCcc-EEEEEeCCC-----eEEEEeCCCCCCcceeccccCC-CCCCc
Confidence 654 22221 11111 111111 1344 566666543 58899987654 333322110 11112
Q ss_pred ceEEEE-----ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCC-ccEEEEEcCCCC
Q 009910 302 GCCGVL-----CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVAFGGIKK 375 (522)
Q Consensus 302 ~~~~~~-----~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~l~v~GG~~~ 375 (522)
-.+++. -++.+++.|+.++ .+.+||+.+.+-...... ......+.+...+ .+..++.|+.++
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNG-----DIKLFDLRNMALRWETNI-------KNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTS-----EEEEEETTTTEEEEEEEC-------SSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred eEEEEEEeccCCCCCEEEEEccCC-----eEEEEECccCceeeecCC-------CCceEEEEcCCCCCCCCEEEEECCCC
Confidence 222221 3667777777553 489999988764333211 1123334443210 233556666543
Q ss_pred CCCCcEEEEEcccCC
Q 009910 376 EPSNQVEVLSIEKNE 390 (522)
Q Consensus 376 ~~~~~v~~y~~~~~~ 390 (522)
.|.+||+.+.+
T Consensus 235 ----~i~i~d~~~~~ 245 (357)
T 3i2n_A 235 ----KFHVFDMRTQH 245 (357)
T ss_dssp ----EEEEEEEEEEE
T ss_pred ----eEEEEeCcCCC
Confidence 58888877654
No 192
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.26 E-value=13 Score=39.10 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=68.4
Q ss_pred eEEEEECCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCc--cceEEEEECCEEEEEcccCC
Q 009910 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPAC--RGHSLISWGKKVLLVGGKTD 167 (522)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~iyv~GG~~~ 167 (522)
.+.++.++.||+.... +.++.+|..+. .|+.-..... ...+.+ ...+.+..+++||+...
T Consensus 62 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~-------~~~~~~~~~~~g~a~~~~~v~~~t~--- 125 (582)
T 1flg_A 62 SQAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPD-------DIRPCCDVVNRGAAIYGDKVFFGTL--- 125 (582)
T ss_dssp CCCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCT-------TCCCSSCSCCCCCEEETTEEEEEET---
T ss_pred eccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCc-------ccccccccCCCccEEECCEEEEEeC---
Confidence 3446789999998652 23899999765 6877543210 000010 11234567889887532
Q ss_pred CCCCceeEEEEECCCCc--EEEeeecCCCCCCC--cceEEEEECC------EEEEEcccCCCCCccCcEEEEEcCCCc--
Q 009910 168 SGSDRVSVWTFDTETEC--WSVVEAKGDIPVAR--SGHTVVRASS------VLILFGGEDGKRRKLNDLHMFDLKSLT-- 235 (522)
Q Consensus 168 ~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r--~~~~~~~~~~------~iyv~GG~~~~~~~~~~v~~yd~~t~~-- 235 (522)
...++.+|.+|++ |+.-.. .+... ...+-++.++ .||+ |........-..++.||+++.+
T Consensus 126 ----dg~l~AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 126 ----DASVVALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp ----TTEEEEEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEE
T ss_pred ----CCEEEEEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEE
Confidence 1359999999876 876432 11111 1122234455 5554 4321111123569999998765
Q ss_pred EEEe
Q 009910 236 WLPL 239 (522)
Q Consensus 236 W~~~ 239 (522)
|+.-
T Consensus 198 W~~~ 201 (582)
T 1flg_A 198 WMRP 201 (582)
T ss_dssp EEEE
T ss_pred eecC
Confidence 8653
No 193
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=92.18 E-value=9.8 Score=37.58 Aligned_cols=234 Identities=12% Similarity=0.100 Sum_probs=110.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++.+++.|+.+ ..+.++|+.+.+-..... . . . ....++..++.+++.|+.+. .+..
T Consensus 158 dg~~lasgs~D-----g~v~iWd~~~~~~~~~~~----------~-h-~-~~v~~~s~~~~~l~sgs~d~------~i~~ 213 (420)
T 4gga_A 158 EGNYLAVGTSS-----AEVQLWDVQQQKRLRNMT----------S-H-S-ARVGSLSWNSYILSSGSRSG------HIHH 213 (420)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEEC----------C-C-S-SCEEEEEEETTEEEEEETTS------EEEE
T ss_pred CCCEEEEEECC-----CeEEEEEcCCCcEEEEEe----------C-C-C-CceEEEeeCCCEEEEEeCCC------ceeE
Confidence 45667777644 468899998765432221 0 1 1 12334455667777777542 4777
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCcceEEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAA 255 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~ 255 (522)
+|..+......... ............-++..++.|+.++ .+.++|..+.+ +..+........+ -.+.+
T Consensus 214 ~d~~~~~~~~~~~~--~h~~~~~~~~~~~~g~~l~s~~~D~------~v~i~~~~~~~~~~~~~~~~~~~~~~--V~~~~ 283 (420)
T 4gga_A 214 HDVRVAEHHVATLS--GHSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVA 283 (420)
T ss_dssp EETTSSSCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCCSSCSCCSEEECCCSSC--EEEEE
T ss_pred eeecccceeeEEec--ccccceeeeeecCCCCeeeeeeccc------cceEEeeccccccceeeeeecccCCc--eeeee
Confidence 78776543322211 1111111111122456666666543 36677776543 1111100011111 11122
Q ss_pred EE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEE
Q 009910 256 LY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 256 ~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd 331 (522)
.. +...+.+.||... ..|.+||+.++.-...... . ....+++.. ++.+++.+|... +.|.+||
T Consensus 284 ~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~~~~~---~--~~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd 350 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA---H--SQVCSILWSPHYKELISGHGFAQ----NQLVIWK 350 (420)
T ss_dssp ECTTCTTEEEEEECTTT----CEEEEEETTTTEEEEEEEC---S--SCEEEEEEETTTTEEEEEECTTT----CCEEEEE
T ss_pred eCCCcccEEEEEeecCC----CEEEEEeCCccccceeecc---c--cceeeeeecCCCCeEEEEEecCC----CEEEEEE
Confidence 22 3443344445322 2588999988765444332 1 112222222 456665555433 3489999
Q ss_pred CCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 332 ~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
..+.+ .+...... ......+.+..++ .+++.||.++ .|-++|+....
T Consensus 351 ~~~~~--~v~~l~gH----~~~V~~l~~spdg--~~l~S~s~D~----tvriWdv~~~~ 397 (420)
T 4gga_A 351 YPTMA--KVAELKGH----TSRVLSLTMSPDG--ATVASAAADE----TLRLWRCFELD 397 (420)
T ss_dssp TTTCC--EEEEECCC----SSCEEEEEECTTS--SCEEEEETTT----EEEEECCSCSS
T ss_pred CCCCc--EEEEEcCC----CCCEEEEEEcCCC--CEEEEEecCC----eEEEEECCCCC
Confidence 87654 33332221 1112333343333 3566777653 47777775543
No 194
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=92.06 E-value=9.4 Score=37.13 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=39.8
Q ss_pred CCEEEEEcccCC-----CCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEE
Q 009910 309 GTKWYIAGGGSR-----KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (522)
Q Consensus 309 ~~~iyi~GG~~~-----~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~ 383 (522)
++++|+....+. ....+.++++|+++.+ .+...+.. . ...+.+..++ .+||+.++ +.|.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~----~--p~~ia~spdg-~~l~v~n~------~~v~v 329 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGR----D--ALSMTIDQQR-NLMLTLDG------GNVNV 329 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECT----T--CCEEEEETTT-TEEEEECS------SCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecC----C--eeEEEECCCC-CEEEEeCC------CeEEE
Confidence 578998754111 1234689999998875 33333321 2 2333444334 47887663 57999
Q ss_pred EEcccC
Q 009910 384 LSIEKN 389 (522)
Q Consensus 384 y~~~~~ 389 (522)
+|+.+.
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 998887
No 195
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.03 E-value=15 Score=39.32 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=67.7
Q ss_pred EEEECCEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecCCC-----CCCCcceEEEEECCEEEEEcccCCCCCccC
Q 009910 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI-----PVARSGHTVVRASSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 152 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 224 (522)
-++.++.||+.... ..++.+|..+++ |+.-...... .......+.++.+++||+... -.
T Consensus 62 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg 127 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DG 127 (668)
T ss_dssp CEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CC
Confidence 34679999997642 359999998876 8864321000 000012234567888887531 24
Q ss_pred cEEEEEcCCCc--EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc--EEEe
Q 009910 225 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 290 (522)
Q Consensus 225 ~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 290 (522)
.++.+|.++.+ |+.-... .........+.++.++. +|+..+.........++.||+++++ |+.-
T Consensus 128 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 59999998765 8765311 00011112233445554 6653221111234579999998764 8764
No 196
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.79 E-value=7.2 Score=37.73 Aligned_cols=199 Identities=11% Similarity=0.081 Sum_probs=93.9
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeee------c-CCCC--CCCcceEEEEE--CCEEEEEcccCCCCCccC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA------K-GDIP--VARSGHTVVRA--SSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~------~-~~~p--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 224 (522)
++.+++.|+.+. .+.+||..+........ . ...+ ....-.+++.. ++.+++.|+.+ .
T Consensus 55 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~ 122 (408)
T 4a11_B 55 EGRYMLSGGSDG------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD------K 122 (408)
T ss_dssp TCCEEEEEETTS------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT------S
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC------C
Confidence 466777777542 37888887754221110 0 0001 11111222222 44577777654 3
Q ss_pred cEEEEEcCCCcEEEeecCCCCCCCCcceEEEEEC---CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCcc
Q 009910 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (522)
Q Consensus 225 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~ 301 (522)
.+.+||+.+.+-.... ..+.+. .+..... +..+++.|+.++ .+.+||+.+..-...-. .....
T Consensus 123 ~i~iwd~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~v~~~d~~~~~~~~~~~----~~~~~ 188 (408)
T 4a11_B 123 TLKVWDTNTLQTADVF---NFEETV--YSHHMSPVSTKHCLVAVGTRGP-----KVQLCDLKSGSCSHILQ----GHRQE 188 (408)
T ss_dssp EEEEEETTTTEEEEEE---ECSSCE--EEEEECSSCSSCCEEEEEESSS-----SEEEEESSSSCCCEEEC----CCCSC
T ss_pred eEEEeeCCCCccceec---cCCCce--eeeEeecCCCCCcEEEEEcCCC-----eEEEEeCCCcceeeeec----CCCCc
Confidence 4888999887655443 222221 1222221 222566665543 58999987654322211 01111
Q ss_pred ceEEEEE-CC-EEEEEcccCCCCCcCeEEEEECCCCc--eEEeccCCCC--------CCCCCCCcEEEEEeeCCccEEEE
Q 009910 302 GCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSS--------SVTSNKGFTLVLVQHKEKDFLVA 369 (522)
Q Consensus 302 ~~~~~~~-~~-~iyi~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~--------~~~~r~~~~~~~~~~~~~~~l~v 369 (522)
-.+++.. ++ .+++.|+.++. +.+||+.+.. ...+...... ..........+.+..+ +..++
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 261 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSR-----VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD--GLHLL 261 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSC-----EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT--SSEEE
T ss_pred EEEEEECCCCCcEEEEEcCCCc-----EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC--CCEEE
Confidence 1222222 33 37778876654 8899986643 2222110000 0011112233333322 33566
Q ss_pred EcCCCCCCCCcEEEEEcccCCc
Q 009910 370 FGGIKKEPSNQVEVLSIEKNES 391 (522)
Q Consensus 370 ~GG~~~~~~~~v~~y~~~~~~w 391 (522)
.|+.++ .+.+||+.+.+-
T Consensus 262 ~~~~dg----~i~vwd~~~~~~ 279 (408)
T 4a11_B 262 TVGTDN----RMRLWNSSNGEN 279 (408)
T ss_dssp EEETTS----CEEEEETTTCCB
T ss_pred EecCCC----eEEEEECCCCcc
Confidence 666543 589999987653
No 197
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=91.73 E-value=8.5 Score=35.93 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=19.5
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCC-CceEEecc
Q 009910 309 GTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAIT 342 (522)
Q Consensus 309 ~~~iyi~GG~~~~~~~~~v~~yd~~~-~~W~~~~~ 342 (522)
++++++.||.++. +.+||+.+ ..|..+..
T Consensus 317 ~~~~l~s~~~dg~-----v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDDGK-----VRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETTSC-----EEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCCCc-----EEEEecCcCcchhheee
Confidence 5677777776654 88888766 36766553
No 198
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=91.71 E-value=4.7 Score=40.97 Aligned_cols=183 Identities=15% Similarity=0.218 Sum_probs=97.6
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++++|+|-| +..|+||..+++.....- + .++. --++....+++|+|-|.. .|+
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w-----~-----gi~~--iDAA~~~~g~~YfFkG~~--------y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSW-----P-----AVGN--CTSALRWLGRYYCFQGNQ--------FLR 210 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECC-----T-----TSCC--CSEEEEETTEEEEEETTE--------EEE
T ss_pred CCeEEEEec-------ccEEEEecccceeecccC-----C-----CCCc--cchheeeCCceEEEECCE--------EEE
Confidence 678899987 568999998876553211 1 1222 245566679999997753 889
Q ss_pred EECCCCcEEEeee---c---CCCC---------------------C-CCcceEEEE-ECCEEEEEcccCCCCCccCcEEE
Q 009910 178 FDTETECWSVVEA---K---GDIP---------------------V-ARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHM 228 (522)
Q Consensus 178 yd~~t~~W~~~~~---~---~~~p---------------------~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~ 228 (522)
||..+.+-...-+ . ..+| . ...--+++. .++++|+|-|. ..|+
T Consensus 211 fd~~~~~v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR 282 (460)
T 1qhu_A 211 FNPVSGEVPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWR 282 (460)
T ss_dssp ECTTTCCCCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEE
T ss_pred EcCccCcccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEE
Confidence 9886643211000 0 0001 0 111224444 46899999663 3555
Q ss_pred EEcCCCcEEEeecC---CCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEee--------eCCCCC
Q 009910 229 FDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK--------IRGFHP 297 (522)
Q Consensus 229 yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--------~~~~~p 297 (522)
+|.....+...... ..+|.. --+|...+++ +|+|=| +.+|+|+...+ .+.+. ..|. |
T Consensus 283 ~~~~~~~~~p~~Is~~WpglP~~--IDAAf~~~~~-~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGl-p 350 (460)
T 1qhu_A 283 LDTNRDGWHSWPIAHQWPQGPST--VDAAFSWEDK-LYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGS-P 350 (460)
T ss_dssp CTTGGGCCCCEEGGGTCTTSCSS--CSEEEEETTE-EEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCC-C
T ss_pred EecCCCCcCccchhhhccCCCCC--CcEEEEECCe-EEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccC-C
Confidence 55543322211110 133433 2234445665 888865 36888986431 22211 1221 2
Q ss_pred CC--ccceEEEE-E--CCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 298 SP--RAGCCGVL-C--GTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 298 ~~--r~~~~~~~-~--~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
.. ...--|+. . .+++|+|-| +..|+||...
T Consensus 351 ~~~~~~~IDAA~~~~~~~ktyfFkG-------~~ywryd~~~ 385 (460)
T 1qhu_A 351 PVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKS 385 (460)
T ss_dssp SSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGG
T ss_pred CccccCcccEEEEeCCCCEEEEEEC-------CEEEEEECCC
Confidence 22 11122333 2 589999988 4589999864
No 199
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=91.68 E-value=6.6 Score=35.20 Aligned_cols=152 Identities=13% Similarity=0.196 Sum_probs=82.4
Q ss_pred eEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec---CCCCCCCcceEEEEE--CCEEEEEcccCCCCCccC
Q 009910 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 224 (522)
-+++..++++|+|=|.. +|+++.....+...... ..+|. ... ++... ++++|+|-| +
T Consensus 27 DAi~~~~g~~y~Fkg~~--------~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG--------~ 88 (207)
T 1pex_A 27 DAITSLRGETMIFKDRF--------FWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG--------R 88 (207)
T ss_dssp SEEEEETTEEEEEETTE--------EEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET--------T
T ss_pred eEEEeCCCcEEEEECCE--------EEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc--------C
Confidence 35556799999996642 88888765444322211 13553 233 33333 589999965 3
Q ss_pred cEEEEEcCCCcE---EEeecCCCCCCC--CcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCC---
Q 009910 225 DLHMFDLKSLTW---LPLHCTGTGPSP--RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--- 295 (522)
Q Consensus 225 ~v~~yd~~t~~W---~~~~~~g~~p~~--r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~--- 295 (522)
..|+|+-.+..- ..+... .+|.. ... +|... ++..+|+|-| +..|+||..+++ +.. +.
T Consensus 89 ~~w~~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~gk~yfFkG-------~~ywr~d~~~~~---~d~-gyPr~ 155 (207)
T 1pex_A 89 KFWALNGYDILEGYPKKISEL-GLPKEVKKIS-AAVHFEDTGKTLLFSG-------NQVWRYDDTNHI---MDK-DYPRL 155 (207)
T ss_dssp EEEEESTTCCCTTCSEESTTT-TCCTTCCCCC-EEEECTTTSEEEEEET-------TEEEEEETTTTE---ECS-SCCCB
T ss_pred EEEEEeCCeeccCCceecccc-CCCCCCcccc-EEEEeCCCCEEEEEeC-------CEEEEEeCcCcc---ccC-CCCcc
Confidence 467775322110 122211 13321 222 23333 3345899876 368999987542 211 00
Q ss_pred -----CCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 296 -----HPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 296 -----~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
+-.+..-.+|...++++|+|-| +..|+||..+.+-..
T Consensus 156 i~~~~~Gip~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 156 IEEDFPGIGDKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHHSTTSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred HHHcCCCCCCCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence 0011222344456899999977 458999987766443
No 200
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.48 E-value=11 Score=36.94 Aligned_cols=282 Identities=13% Similarity=0.079 Sum_probs=134.9
Q ss_pred CceEEeeecCCCCCCccceEEEEE---CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCc---
Q 009910 74 ENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC--- 147 (522)
Q Consensus 74 ~~W~~l~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r--- 147 (522)
..|+.+.. .+....-++++.. .+.||+.+.... .-..+++.+-...+|+.+..... .+ ..+.+
T Consensus 43 ~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~-~~-----~~~~~~~~ 111 (394)
T 3b7f_A 43 RTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPA-FN-----KAPEGETG 111 (394)
T ss_dssp CSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCC-CC-----CCC----C
T ss_pred CCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCcccc-CC-----Cccccccc
Confidence 58998741 1222223444443 356887653211 11247777667789998864210 00 00010
Q ss_pred ----cceEEEEE----CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCC--------------CCcceEEEE
Q 009910 148 ----RGHSLISW----GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV--------------ARSGHTVVR 205 (522)
Q Consensus 148 ----~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~--------------~r~~~~~~~ 205 (522)
.-.+++.. .+.||+.+-. .-+++.+-...+|+.+......|. ....+++++
T Consensus 112 ~~~~~i~~l~~~~~~~~~~l~~g~~~-------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~ 184 (394)
T 3b7f_A 112 RVVDHVFWLTPGHASEPGTWYAGTSP-------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILV 184 (394)
T ss_dssp CCCCEEEEEEECCTTSTTCEEEEEET-------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEE
T ss_pred ccccceeEEEeCCCCCCCEEEEEecC-------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEE
Confidence 11233333 4677765321 238888888889998753111121 112234444
Q ss_pred E---CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC---CCCCCC-----CcceEEEEECC--cEEEEEcCCCCCC
Q 009910 206 A---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSP-----RSNHVAALYDD--KNLLIFGGSSKSK 272 (522)
Q Consensus 206 ~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---g~~p~~-----r~~~~~~~~~~--~~lyv~GG~~~~~ 272 (522)
. .+.||+.... ..+++.+-...+|+.+... ..+|.+ ...++++.... ..||+...
T Consensus 185 d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----- 252 (394)
T 3b7f_A 185 DPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----- 252 (394)
T ss_dssp CTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-----
T ss_pred CCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-----
Confidence 3 2567775321 2377777777899988521 012221 22344444432 54666321
Q ss_pred CCCcEEEEEcCCCcEEEeeeCCCCCCC--ccceEEEEE---CCEEEEEcccCC-------CCCcCeEEEEECCCCceEEe
Q 009910 273 TLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLC---GTKWYIAGGGSR-------KKRHAETLIFDILKGEWSVA 340 (522)
Q Consensus 273 ~~~~v~~yd~~~~~W~~~~~~~~~p~~--r~~~~~~~~---~~~iyi~GG~~~-------~~~~~~v~~yd~~~~~W~~~ 340 (522)
..+++.+....+|+.+... .|.. ....+.+.. .+.||+...... ......+++-.-...+|+.+
T Consensus 253 --~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 253 --CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp --TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred --CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence 3589998889999988641 1321 233333332 356777531110 01112355443334789987
Q ss_pred cc-CCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCCcccc
Q 009910 341 IT-SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (522)
Q Consensus 341 ~~-~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~w~~~ 394 (522)
.. +|............+++...+...||+ |+.. ..|++-+-...+|...
T Consensus 329 ~~glp~~~~~~~~~~~~~~~~p~~~~~l~~-g~~~----g~l~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 329 DRGLPTDQAWLTVKRQAMTADAHAPVGVYF-GTTG----GEIWASADEGEHWQCI 378 (394)
T ss_dssp CBTSCCSSCCCCCCTBSEEECCSSSCCEEE-ECTT----SCEEEESSTTSBCEEE
T ss_pred CCCCCCccccceEEEEEEEECCCCCCEEEE-EeCC----CeEEEECCCCCCceEc
Confidence 63 121100000111223333223344664 4421 2366555555677765
No 201
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.01 E-value=26 Score=40.12 Aligned_cols=231 Identities=10% Similarity=-0.045 Sum_probs=109.5
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE---CCEEEEEcccCCCCCCcee
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 174 (522)
+++.++.|+.+ ..+.++|..+.+....-. .....-.++... +..+++.|+.+. .
T Consensus 668 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~l~sg~~d~------~ 724 (1249)
T 3sfz_A 668 DDSYIATCSAD-----KKVKIWDSATGKLVHTYD------------EHSEQVNCCHFTNKSNHLLLATGSNDF------F 724 (1249)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEEEE------------CCSSCEEEEEECSSSSCCEEEEEETTS------C
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCceEEEEc------------CCCCcEEEEEEecCCCceEEEEEeCCC------e
Confidence 45566666643 468899998765433221 001111122222 234555555432 3
Q ss_pred EEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCC------C-
Q 009910 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG------P- 246 (522)
Q Consensus 175 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~------p- 246 (522)
+..||..+.+-...-. ..... -.+++. -++..++.|+.++ .+.+||+.+..-......... +
T Consensus 725 v~vwd~~~~~~~~~~~---~h~~~-v~~~~~sp~~~~l~s~s~dg------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 725 LKLWDLNQKECRNTMF---GHTNS-VNHCRFSPDDELLASCSADG------TLRLWDVRSANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp EEEEETTSSSEEEEEC---CCSSC-EEEEEECSSTTEEEEEESSS------EEEEEEGGGTEEEEEEECCCCC-------
T ss_pred EEEEECCCcchhheec---CCCCC-EEEEEEecCCCEEEEEECCC------eEEEEeCCCCcccceecccccccccCCcc
Confidence 8889998876443221 11111 112222 2456777776543 478888876643322110000 0
Q ss_pred --CCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-ECCEEEEEcccCCCC
Q 009910 247 --SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKK 322 (522)
Q Consensus 247 --~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~ 322 (522)
......+++.. ++. .++.++ .+.+..||..+.........+ ....-.+++. -++.++++|+.++.
T Consensus 795 ~~~~~~v~~~~~s~dg~-~l~~~~------~~~v~~~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~dg~- 863 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGD-KIIVAA------KNKVLLFDIHTSGLLAEIHTG---HHSTIQYCDFSPYDHLAVIALSQYC- 863 (1249)
T ss_dssp -CCCCCBCCCCBCTTSS-EEEEEE------TTEEEEEETTTCCEEEEEECS---SSSCCCEEEECSSTTEEEEECSSSC-
T ss_pred ccccceEEEEEECCCCC-EEEEEc------CCcEEEEEecCCCceeEEcCC---CCCceEEEEEcCCCCEEEEEeCCCe-
Confidence 00011112222 344 444443 246899999887655443321 1111122222 25677777776543
Q ss_pred CcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
+.+||..+..-.... .. .......+.+..++ ..++.|+.++ .+.+|++.+
T Consensus 864 ----v~vwd~~~~~~~~~~--~~----h~~~v~~v~~spdg--~~l~s~s~dg----~v~vw~~~~ 913 (1249)
T 3sfz_A 864 ----VELWNIDSRLKVADC--RG----HLSWVHGVMFSPDG--SSFLTASDDQ----TIRVWETKK 913 (1249)
T ss_dssp ----EEEEETTTTEEEEEE--CC----CSSCEEEEEECTTS--SEEEEEETTS----CEEEEEHHH
T ss_pred ----EEEEEcCCCceeeec--CC----CccceEEEEECCCC--CEEEEEeCCC----eEEEEEccc
Confidence 889998876533221 11 11122333443322 3556666543 467777543
No 202
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=90.47 E-value=14 Score=36.13 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=76.8
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
+++.++.|+.+. .+.+||+.+.+-...- .. ....-.+++...+...++.|+.+ ..+.+||+.+..
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~---~~-h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMIL---QG-HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE---CC-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEE---cc-CCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCe
Confidence 467777777643 4889999887654332 11 11112233333333256666654 358899998876
Q ss_pred EEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCC-CCCCCCcEEEEEeeCC
Q 009910 287 WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS-VTSNKGFTLVLVQHKE 363 (522)
Q Consensus 287 W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-~~~r~~~~~~~~~~~~ 363 (522)
....... .. ...+++.. ++++++.|+.++. +.+||+.+..-......+... .........+.+..+
T Consensus 199 ~~~~~~~---~~--~v~~~~~~~~~~~~l~~~s~d~~-----v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~- 267 (393)
T 1erj_A 199 CSLTLSI---ED--GVTTVAVSPGDGKYIAAGSLDRA-----VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD- 267 (393)
T ss_dssp EEEEEEC---SS--CEEEEEECSTTCCEEEEEETTSC-----EEEEETTTCCEEEEEC------CCCSSCEEEEEECTT-
T ss_pred eEEEEEc---CC--CcEEEEEECCCCCEEEEEcCCCc-----EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC-
Confidence 5433221 11 11122222 5678888887654 889998876543322111100 011112233333322
Q ss_pred ccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 364 KDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 364 ~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
+.+++.|+.++ .|.+||+...
T Consensus 268 -g~~l~s~s~d~----~v~~wd~~~~ 288 (393)
T 1erj_A 268 -GQSVVSGSLDR----SVKLWNLQNA 288 (393)
T ss_dssp -SSEEEEEETTS----EEEEEEC---
T ss_pred -CCEEEEEeCCC----EEEEEECCCC
Confidence 33566777653 5788887654
No 203
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=90.39 E-value=12 Score=35.32 Aligned_cols=145 Identities=10% Similarity=0.097 Sum_probs=71.5
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEE-cccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 175 (522)
++..++.|+.+ ..+.+||+.+.+-.. +.. .. . .-.++... ++.+++.|+.+. .+
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~-----------h~-~-~v~~~~~~~~~~~l~s~s~D~------~i 131 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRFVG-----------HK-S-DVMSVDIDKKASMIISGSRDK------TI 131 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-----------CS-S-CEEEEEECTTSCEEEEEETTS------CE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEEcc-----------CC-C-cEEEEEEcCCCCEEEEEeCCC------eE
Confidence 45566666644 468889998765322 211 00 0 11122222 466777777643 37
Q ss_pred EEEECCCCcEEEeeecCCCCCCCcceEEEEE-------CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 009910 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (522)
Q Consensus 176 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 248 (522)
..||.....-..+.. ....-.++... ++.+++.||.+. .+.++|+.+.+-...- .. ..
T Consensus 132 ~vwd~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~---~~-h~ 196 (319)
T 3frx_A 132 KVWTIKGQCLATLLG-----HNDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADF---IG-HN 196 (319)
T ss_dssp EEEETTSCEEEEECC-----CSSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEE---CC-CC
T ss_pred EEEECCCCeEEEEec-----cCCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheee---cC-CC
Confidence 778877654333321 11111112221 233566666543 3788898776533321 11 11
Q ss_pred CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
..-.+++...+..+++.|+.++ .+.+||+.+.+
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg-----~i~iwd~~~~~ 229 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDG-----EIMLWNLAAKK 229 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTC-----EEEEEETTTTE
T ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Confidence 1112333333433677776543 58899987764
No 204
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.37 E-value=14 Score=36.34 Aligned_cols=196 Identities=9% Similarity=0.042 Sum_probs=100.5
Q ss_pred EEEEECCC--CcEEEeeecCCCCCCCcceEEEEE---CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC-
Q 009910 175 VWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP- 248 (522)
Q Consensus 175 v~~yd~~t--~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~- 248 (522)
+++++... .+|+...+ .+....-++++.. .+.||+.+..... -..+++.+-...+|+.+.....++..
T Consensus 33 l~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~~ 106 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKAP 106 (394)
T ss_dssp EEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCCC
T ss_pred eEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCcc
Confidence 77777655 78998753 1222233455544 4678876532111 12477777677899998632112211
Q ss_pred -C-----cce--EEEEE--C-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCC--------------Cccce
Q 009910 249 -R-----SNH--VAALY--D-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--------------PRAGC 303 (522)
Q Consensus 249 -r-----~~~--~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~--------------~r~~~ 303 (522)
+ ... +.+.. + ...+|+.+. ...|++.+-...+|+.+......|. ....+
T Consensus 107 ~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 107 EGETGRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp ----CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred cccccccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 1 111 22222 1 344776432 1358888888889999864211121 11122
Q ss_pred EEEEE---CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCC--CCCCC----CCcEEEEEeeCCccEEEEEcCCC
Q 009910 304 CGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS--SVTSN----KGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 304 ~~~~~---~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~--~~~~r----~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
+.+.. .+.||+.... .-+++.+-...+|+.+...... .+... .....+.+...+.+.||+..+
T Consensus 181 ~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-- 252 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-- 252 (394)
T ss_dssp EEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--
T ss_pred EEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--
Confidence 33332 2567775432 2388888888999987532111 11111 112333343333356666332
Q ss_pred CCCCCcEEEEEcccCCcccc
Q 009910 375 KEPSNQVEVLSIEKNESSMG 394 (522)
Q Consensus 375 ~~~~~~v~~y~~~~~~w~~~ 394 (522)
..|++.+-...+|...
T Consensus 253 ----~gl~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 253 ----CGIYRMDRREGVWKRI 268 (394)
T ss_dssp ----TEEEEEETTTTEEECG
T ss_pred ----CeEEEeCCCCCcceEC
Confidence 2477777777788665
No 205
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=89.85 E-value=12 Score=34.34 Aligned_cols=198 Identities=7% Similarity=-0.068 Sum_probs=107.7
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCC
Q 009910 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTD 167 (522)
Q Consensus 92 ~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 167 (522)
++.++. ++.||+.-.. .+.++++++.+..-..+... .. ..-+.++.. ++.||+.-..
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~----------~~--~~p~~ia~d~~~~~lyv~d~~-- 99 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQ----------DL--GSPEGIALDHLGRTIFWTDSQ-- 99 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECT----------TC--CCEEEEEEETTTTEEEEEETT--
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEEC----------CC--CCccEEEEEecCCeEEEEECC--
Confidence 455554 4789987532 35789999987643322210 01 122444443 5789987432
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCC
Q 009910 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (522)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 245 (522)
...++++++....-+.+... .+. .-..+++. +++||+.-... ..+.++++++....-+.+... .+
T Consensus 100 ----~~~I~~~~~~g~~~~~~~~~-~~~---~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~-~~ 166 (267)
T 1npe_A 100 ----LDRIEVAKMDGTQRRVLFDT-GLV---NPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQD-NL 166 (267)
T ss_dssp ----TTEEEEEETTSCSCEEEECS-SCS---SEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECT-TC
T ss_pred ----CCEEEEEEcCCCCEEEEEEC-CCC---CccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEEC-CC
Confidence 23588999876543333321 111 12334443 58999974221 135688998875443333211 11
Q ss_pred CCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCc
Q 009910 246 PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (522)
Q Consensus 246 p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~ 324 (522)
. .-...+.- +++.||+.-.. .+.|+++|+....-..+.... ..| .+++..++.+|+.....
T Consensus 167 ~---~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~--~~P---~gi~~d~~~lyva~~~~----- 228 (267)
T 1npe_A 167 G---LPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEGL--QYP---FAVTSYGKNLYYTDWKT----- 228 (267)
T ss_dssp S---CEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEECC--CSE---EEEEEETTEEEEEETTT-----
T ss_pred C---CCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecCC--CCc---eEEEEeCCEEEEEECCC-----
Confidence 1 11233333 34568886432 357999999765433332221 222 34445588999975432
Q ss_pred CeEEEEECCCCceEE
Q 009910 325 AETLIFDILKGEWSV 339 (522)
Q Consensus 325 ~~v~~yd~~~~~W~~ 339 (522)
+.|+++|+.+.+-..
T Consensus 229 ~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 229 NSVIAMDLAISKEMD 243 (267)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CeEEEEeCCCCCceE
Confidence 459999998776543
No 206
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=89.81 E-value=14 Score=39.37 Aligned_cols=164 Identities=10% Similarity=-0.007 Sum_probs=81.6
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
+++.+++...... ...++|.+|..+..|..+... .... ...+..++.+|+....+ .....++++|+.+..
T Consensus 237 DG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~----~~~~-~~~~~~~g~l~~~s~~~---~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 237 DGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG----VGAK-YEVHAWKDRFYVLTDEG---APRQRVFEVDPAKPA 306 (695)
T ss_dssp TSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC----SSCC-EEEEEETTEEEEEECTT---CTTCEEEEEBTTBCS
T ss_pred CCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC----CCce-EEEEecCCcEEEEECCC---CCCCEEEEEeCCCCC
Confidence 4444444433221 356799998878888888741 1111 22223466655553322 124679999987754
Q ss_pred ---EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE-EC-C
Q 009910 236 ---WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CG-T 310 (522)
Q Consensus 236 ---W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~-~~-~ 310 (522)
|+.+... .+ ...-...+..++. +++....+. ...++.+++....-+.+.. |.......... -+ +
T Consensus 307 ~~~~~~l~~~--~~-~~~l~~~~~~~~~-lv~~~~~dg---~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~ 375 (695)
T 2bkl_A 307 RASWKEIVPE--DS-SASLLSVSIVGGH-LSLEYLKDA---TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLD 375 (695)
T ss_dssp GGGCEEEECC--CS-SCEEEEEEEETTE-EEEEEEETT---EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCS
T ss_pred ccCCeEEecC--CC-CCeEEEEEEECCE-EEEEEEECC---EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCC
Confidence 8887521 11 1111223334554 666554332 3468888876543333321 21111001101 12 3
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 311 ~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
.+++... + ...-..++.||+.+.+.+.+..
T Consensus 376 ~l~~~~s-s-~~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 376 DAYYVFT-S-FTTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEEEE-E-TTEEEEEEEEETTTCCEEEEEE
T ss_pred EEEEEEc-C-CCCCCEEEEEECCCCcEEEEec
Confidence 4443321 1 1122568899998887766543
No 207
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=89.75 E-value=22 Score=37.30 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=66.2
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecCCCCCC---CcceEEEEECCEEEEEcccCCCCCccCc
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVA---RSGHTVVRASSVLILFGGEDGKRRKLND 225 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 225 (522)
+-++.++.||+..... .++.+|.++++ |+.-........+ ....+.++.+++||+.. .-..
T Consensus 63 ~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t-------~dg~ 128 (582)
T 1flg_A 63 QAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-------LDAS 128 (582)
T ss_dssp CCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-------TTTE
T ss_pred ccEEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe-------CCCE
Confidence 3356799999976531 29999998876 8865421110000 01123456788988852 1245
Q ss_pred EEEEEcCCCc--EEEeecCCCCCCCC--cceEEEEECC----c-EEEEEcCCCC-CCCCCcEEEEEcCCC--cEEE
Q 009910 226 LHMFDLKSLT--WLPLHCTGTGPSPR--SNHVAALYDD----K-NLLIFGGSSK-SKTLNDLYSLDFETM--IWTR 289 (522)
Q Consensus 226 v~~yd~~t~~--W~~~~~~g~~p~~r--~~~~~~~~~~----~-~lyv~GG~~~-~~~~~~v~~yd~~~~--~W~~ 289 (522)
++.+|.++.+ |+.-.. .+... ...+-++.++ + .||+ |.... ......++.||++++ .|+.
T Consensus 129 l~AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 129 VVALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 8999998865 876431 11111 1112234444 2 2544 43211 112457999999865 4864
No 208
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=89.74 E-value=14 Score=35.07 Aligned_cols=197 Identities=11% Similarity=0.108 Sum_probs=93.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
.+ +++.|+.+. .+..||+.++.+..+...........-.+++.. ++.+++.|+.+.. +.+||....
T Consensus 24 ~~-~las~~~D~------~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~------v~iw~~~~~ 90 (330)
T 2hes_X 24 QG-ILATGSTDR------KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST------VSIWAKEES 90 (330)
T ss_dssp TT-EEEEEESSS------CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC------EEEEEC---
T ss_pred CC-EEEEEcCCC------EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc------EEEEEcccC
Confidence 44 666666542 378888887655544321000011111222222 4677777776543 677776432
Q ss_pred -----cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC--CcEEEeeeCCCCCCCccceEEEE
Q 009910 235 -----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVL 307 (522)
Q Consensus 235 -----~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~p~~r~~~~~~~ 307 (522)
.+..+... .. ....-.+++...+..+++.|+.++ .+.+||+.. ..++.+.... ........+.
T Consensus 91 ~~~~~~~~~~~~~-~~-h~~~V~~v~~sp~g~~las~s~D~-----~v~iwd~~~~~~~~~~~~~~~---~h~~~v~~v~ 160 (330)
T 2hes_X 91 ADRTFEMDLLAII-EG-HENEVKGVAWSNDGYYLATCSRDK-----SVWIWETDESGEEYECISVLQ---EHSQDVKHVI 160 (330)
T ss_dssp ----CCCEEEEEE-C-----CEEEEEECTTSCEEEEEETTS-----CEEEEECCTTCCCCEEEEEEC---CCSSCEEEEE
T ss_pred cCccccceeEEEE-cC-CCCcEEEEEECCCCCEEEEEeCCC-----EEEEEeccCCCCCeEEEEEec---cCCCceEEEE
Confidence 22222210 00 011111223333333667776654 488888842 3454444331 1111122233
Q ss_pred E--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEE
Q 009910 308 C--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 385 (522)
Q Consensus 308 ~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~ 385 (522)
. ++.+++.|+.++. +.++|..+..|+.+...... ......+.+...+....++.|+.++ .|-+||
T Consensus 161 ~~p~~~~l~s~s~D~~-----i~iW~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~s~D~----~v~iw~ 227 (330)
T 2hes_X 161 WHPSEALLASSSYDDT-----VRIWKDYDDDWECVAVLNGH----EGTVWSSDFDKTEGVFRLCSGSDDS----TVRVWK 227 (330)
T ss_dssp ECSSSSEEEEEETTSC-----EEEEEEETTEEEEEEEECCC----SSCEEEEEECCSSSSCEEEEEETTS----CEEEEE
T ss_pred ECCCCCEEEEEcCCCe-----EEEEECCCCCeeEEEEccCC----CCcEEEEEecCCCCeeEEEEEeCCC----eEEEEE
Confidence 2 5677788877654 88888877777665543221 1112223333222234566777653 466776
Q ss_pred ccc
Q 009910 386 IEK 388 (522)
Q Consensus 386 ~~~ 388 (522)
+..
T Consensus 228 ~~~ 230 (330)
T 2hes_X 228 YMG 230 (330)
T ss_dssp EEE
T ss_pred ecC
Confidence 654
No 209
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=89.43 E-value=6.1 Score=37.42 Aligned_cols=112 Identities=9% Similarity=0.128 Sum_probs=54.6
Q ss_pred EEEEEcccCCCCCccCcEEEEEcCC-CcEEEeecCCCCCCCCcceEEEEE-CC-----cEEEEEcCCCCCCCCCcEEEEE
Q 009910 209 VLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLHCTGTGPSPRSNHVAALY-DD-----KNLLIFGGSSKSKTLNDLYSLD 281 (522)
Q Consensus 209 ~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~~-~~-----~~lyv~GG~~~~~~~~~v~~yd 281 (522)
++++.||.+. .+.++|..+ ..|..+. .+..-...-..+.+ .+ . +++.|+.++ .+.+||
T Consensus 180 ~~l~sgs~D~------~v~lWd~~~~~~~~~~~---~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~-----~v~iw~ 244 (316)
T 3bg1_A 180 KRFASGGCDN------LIKLWKEEEDGQWKEEQ---KLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDG-----RVFIWT 244 (316)
T ss_dssp CBEECCBTTS------BCCEEEECTTSCEEEEE---CCBCCSSCEEEEECCCCSSCSCC-EEEEEETTC-----EEEEEE
T ss_pred ceEEEecCCC------eEEEEEeCCCCccceee---ecccCCCceEEEEecCCCCCCCc-eEEEEcCCC-----eEEEEE
Confidence 4566666543 255667653 4576654 22211111122222 22 4 666666543 477888
Q ss_pred cCC---CcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECC-CCceEEeccC
Q 009910 282 FET---MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITS 343 (522)
Q Consensus 282 ~~~---~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~ 343 (522)
+.+ ..|...... .....-.+++.. ++++++.||.++. +.+++.. ...|..+...
T Consensus 245 ~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~~~D~~-----v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 245 CDDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVSGGDNK-----VTLWKESVDGQWVCISDV 303 (316)
T ss_dssp CSSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEEESSSC-----EEEEEECTTSCEEEEEEC
T ss_pred ccCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEEcCCCe-----EEEEEECCCCcEEEeeec
Confidence 765 233211100 001111122222 5677788886654 7777754 4678877654
No 210
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.41 E-value=26 Score=37.77 Aligned_cols=190 Identities=9% Similarity=0.042 Sum_probs=101.9
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
++.|+|.. .+.+++||+.+.++..... ..+. .-.+++..++.|+|... . .+++
T Consensus 73 ~g~lWigT-------~~Gl~~yd~~~~~f~~~~~-----------~~~~-~i~~i~~~~g~lWigt~-~-------Gl~~ 125 (758)
T 3ott_A 73 NTYLYMGT-------DNGILVYNYRADRYEQPET-----------DFPT-DVRTMALQGDTLWLGAL-N-------GLYT 125 (758)
T ss_dssp TTEEEEEE-------TTEEEEEETTTTEECCCSC-----------CCCS-CEEEEEEETTEEEEEET-T-------EEEE
T ss_pred CCcEEEEe-------CCCeEEEeCCCCEEECccc-----------CCCc-eEEEEEecCCcEEEEcC-C-------ccee
Confidence 46688753 2457899999887654111 0111 11233445788887421 1 3899
Q ss_pred EECCCCcEEEeeec-CCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCC-CCCcceEE
Q 009910 178 FDTETECWSVVEAK-GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVA 254 (522)
Q Consensus 178 yd~~t~~W~~~~~~-~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~r~~~~~ 254 (522)
||+.+++....... ..++... -.+++.. ++.|+|.- . +.+.+||+.+.++.......... ....-.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigt--~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 196 (758)
T 3ott_A 126 YQLQSRKLTSFDTRRNGLPNNT-IYSIIRTKDNQIYVGT--Y------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSL 196 (758)
T ss_dssp EETTTCCEEEECHHHHCCSCSC-EEEEEECTTCCEEEEE--T------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEE
T ss_pred EeCCCCeEEEeccCCCCcCCCe-EEEEEEcCCCCEEEEe--C------CCHhhCccCCCceEEecCCCccccccceeEEE
Confidence 99999988876321 1233222 1223333 57888731 1 34889999998887663211100 01111222
Q ss_pred EEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEEC
Q 009910 255 ALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDI 332 (522)
Q Consensus 255 ~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~ 332 (522)
..-. +..|+| |-. ..+++||+.+++++..... +.. .-.+.+.. ++.|+|.- . .-+++||+
T Consensus 197 ~~d~~~~~lWi-gt~------~Gl~~~~~~~~~~~~~~~l---~~~-~i~~i~~d~~g~lWigT-~------~Gl~~~~~ 258 (758)
T 3ott_A 197 LEDTTRQCVWI-GTE------GYLFQYFPSTGQIKQTEAF---HNN-SIKSLALDGNGDLLAGT-D------NGLYVYHN 258 (758)
T ss_dssp EEETTTTEEEE-EEE------EEEEEEETTTTEEEEEEEE---EEE-EEEEEEECTTCCEEEEE-T------TEEEEECC
T ss_pred EEECCCCEEEE-EEC------CCCeEEcCCCCeEEeccCC---CCC-eEEEEEEcCCCCEEEEe-C------CceeEEec
Confidence 2222 343565 321 2489999999888766432 111 11122222 45666642 1 12889999
Q ss_pred CCCceEEec
Q 009910 333 LKGEWSVAI 341 (522)
Q Consensus 333 ~~~~W~~~~ 341 (522)
.+.+++.+.
T Consensus 259 ~~~~~~~~~ 267 (758)
T 3ott_A 259 DTTPLQHII 267 (758)
T ss_dssp TTSCCEEEC
T ss_pred CCCcEEEEE
Confidence 888877654
No 211
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=89.27 E-value=15 Score=34.85 Aligned_cols=208 Identities=10% Similarity=0.042 Sum_probs=104.5
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCC--cEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCce
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRV 173 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 173 (522)
++.|||.... .+.+.+||+... .-..+......... ......-..++.. ++.||+..++. ..
T Consensus 101 ~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~----~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~ 166 (329)
T 3fvz_A 101 DGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSD----QNHFCQPTDVAVEPSTGAVFVSDGYC-----NS 166 (329)
T ss_dssp TSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCS----TTCCSSEEEEEECTTTCCEEEEECSS-----CC
T ss_pred CCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCC----ccccCCCcEEEEeCCCCeEEEEeCCC-----CC
Confidence 4668887642 256889998765 22222211100000 0001112334444 57899987521 23
Q ss_pred eEEEEECCCCcEEEeeecCCC----CCC-CcceEEEEE-C-CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCC
Q 009910 174 SVWTFDTETECWSVVEAKGDI----PVA-RSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~----p~~-r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p 246 (522)
.+.+||+....-..+...+.- +.. ..-+.+++. + +.||+.... .+.+.+||+.+.+....-. ...
T Consensus 167 ~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~~~~~~G~~~~~~~--~~~ 238 (329)
T 3fvz_A 167 RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQCFKTDTKEFVREIK--HAS 238 (329)
T ss_dssp EEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEC--CTT
T ss_pred eEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEEEECCCCcEEEEEe--ccc
Confidence 589999655544444322211 111 112344443 3 799998532 3569999998776654421 111
Q ss_pred CCCcceEEEEECCcEEEEEcCCCC--CCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCC
Q 009910 247 SPRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKR 323 (522)
Q Consensus 247 ~~r~~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~ 323 (522)
....-.+.+... ..+|+..|... ......+.++|+.+++....-.... .....-.+.++- ++.|||....++
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~~p~~ia~~~dG~lyvad~~~~--- 313 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-KHFDMPHDIVASEDGTVYIGDAHTN--- 313 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS-SCCSSEEEEEECTTSEEEEEESSSC---
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-CccCCeeEEEECCCCCEEEEECCCC---
Confidence 111122333444 44666666422 2234579999988776554422100 111112233332 568999876543
Q ss_pred cCeEEEEECCC
Q 009910 324 HAETLIFDILK 334 (522)
Q Consensus 324 ~~~v~~yd~~~ 334 (522)
.|++|+++.
T Consensus 314 --~I~~~~~~~ 322 (329)
T 3fvz_A 314 --TVWKFTLTE 322 (329)
T ss_dssp --CEEEEEEEE
T ss_pred --EEEEEeCCc
Confidence 488888653
No 212
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=88.97 E-value=15 Score=34.42 Aligned_cols=188 Identities=13% Similarity=0.034 Sum_probs=90.8
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCc----EEEeeecCCCCCCCcceEEEE-ECCE-EEEEcccCCCCCccCcEEEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC----WSVVEAKGDIPVARSGHTVVR-ASSV-LILFGGEDGKRRKLNDLHMF 229 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~v~~y 229 (522)
++.+++.|+.+ ..+.+||..+.. ...... ....-.+++. -++. +++.|+.++ .+.+|
T Consensus 22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg------~i~~w 84 (342)
T 1yfq_A 22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLR-----YKHPLLCCNFIDNTDLQIYVGTVQG------EILKV 84 (342)
T ss_dssp GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEE-----CSSCEEEEEEEESSSEEEEEEETTS------CEEEE
T ss_pred CCCEEEEEcCC------CeEEEEEeCCCCccccceeeee-----cCCceEEEEECCCCCcEEEEEcCCC------eEEEE
Confidence 45556666643 247777776655 322221 1111223333 3566 777777543 48899
Q ss_pred Ec-CCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc-------EEEeeeCCCCCCCcc
Q 009910 230 DL-KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-------WTRIKIRGFHPSPRA 301 (522)
Q Consensus 230 d~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~~~~p~~r~ 301 (522)
|+ .+.+...+. ..+....-.+++...+. +++.|+.++ .+..||+.+.. .+.+... .....
T Consensus 85 d~~~~~~~~~~~---~~~~~~~v~~l~~~~~~-~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (342)
T 1yfq_A 85 DLIGSPSFQALT---NNEANLGICRICKYGDD-KLIAASWDG-----LIEVIDPRNYGDGVIAVKNLNSNNT---KVKNK 152 (342)
T ss_dssp CSSSSSSEEECB---SCCCCSCEEEEEEETTT-EEEEEETTS-----EEEEECHHHHTTBCEEEEESCSSSS---SSCCC
T ss_pred EeccCCceEecc---ccCCCCceEEEEeCCCC-EEEEEcCCC-----eEEEEcccccccccccccCCeeeEE---eeCCc
Confidence 99 888765554 21112222233334455 566666543 58888875300 1111111 22222
Q ss_pred ceEEEEECCEEEEEcccCCCCCcCeEEEEECCC-Cc--eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCC
Q 009910 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK-GE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (522)
Q Consensus 302 ~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~-~~--W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~ 378 (522)
-.+++...+. +++|+.++ .+.+||+.+ .. ...... + .......+.+... .+.+++.|+.++
T Consensus 153 v~~~~~~~~~-l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~-~-----~~~~i~~i~~~~~-~~~~l~~~~~dg--- 216 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMNNS-----QVQWFRLPLCEDDNGTIEES-G-----LKYQIRDVALLPK-EQEGYACSSIDG--- 216 (342)
T ss_dssp EEEEEECSSE-EEEEESTT-----EEEEEESSCCTTCCCEEEEC-S-----CSSCEEEEEECSG-GGCEEEEEETTS---
T ss_pred eEEEEecCCc-EEEEeCCC-----eEEEEECCccccccceeeec-C-----CCCceeEEEECCC-CCCEEEEEecCC---
Confidence 2233334555 56665543 489999887 33 222221 1 1112233344320 234666777543
Q ss_pred CcEEEEEcccC
Q 009910 379 NQVEVLSIEKN 389 (522)
Q Consensus 379 ~~v~~y~~~~~ 389 (522)
.+.+|+.+..
T Consensus 217 -~i~i~~~~~~ 226 (342)
T 1yfq_A 217 -RVAVEFFDDQ 226 (342)
T ss_dssp -EEEEEECCTT
T ss_pred -cEEEEEEcCC
Confidence 4666665543
No 213
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=88.92 E-value=25 Score=36.78 Aligned_cols=237 Identities=12% Similarity=0.113 Sum_probs=118.2
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 175 (522)
++.+||.... .+.+.++|+.+.+-...-+. ...-|.++.. +..+|+.+. ...+
T Consensus 166 ~~~~~V~~~~-----~~~V~viD~~t~~v~~~i~~-------------g~~p~~v~~SpDGr~lyv~~~-------dg~V 220 (567)
T 1qks_A 166 ENLFSVTLRD-----AGQIALIDGSTYEIKTVLDT-------------GYAVHISRLSASGRYLFVIGR-------DGKV 220 (567)
T ss_dssp GGEEEEEETT-----TTEEEEEETTTCCEEEEEEC-------------SSCEEEEEECTTSCEEEEEET-------TSEE
T ss_pred CceEEEEeCC-----CCeEEEEECCCCeEEEEEeC-------------CCCccceEECCCCCEEEEEcC-------CCeE
Confidence 4567776542 36899999998754332221 1112333332 457787542 1359
Q ss_pred EEEECC--CCcEEEeeecCCCCCCCcceEEEEE-----CC-EEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCC---
Q 009910 176 WTFDTE--TECWSVVEAKGDIPVARSGHTVVRA-----SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT--- 244 (522)
Q Consensus 176 ~~yd~~--t~~W~~~~~~~~~p~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~--- 244 (522)
..||+. +.+- +.. ++....-..+++. ++ .+|+.. + ..+.+.++|..+.+=...-..+.
T Consensus 221 ~viD~~~~t~~~--v~~---i~~G~~P~~ia~s~~~~pDGk~l~v~n-~-----~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 221 NMIDLWMKEPTT--VAE---IKIGSEARSIETSKMEGWEDKYAIAGA-Y-----WPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp EEEETTSSSCCE--EEE---EECCSEEEEEEECCSTTCTTTEEEEEE-E-----ETTEEEEEETTTCCEEEEEECCEECT
T ss_pred EEEECCCCCCcE--eEE---EecCCCCceeEEccccCCCCCEEEEEE-c-----cCCeEEEEECCCCcEEEEEecccccc
Confidence 999996 5432 221 2222222233333 44 566652 2 23567889987765433221111
Q ss_pred -----CCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCE-EEEEcc
Q 009910 245 -----GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGG 317 (522)
Q Consensus 245 -----~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyi~GG 317 (522)
.|.+|.....+...+..+++.= ...+.++..|........+... +..+.-|....- +++ +|+...
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~~~pdgr~~~va~~ 361 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAAN 361 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEG
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEEEEecCCCccceeeee---eccccccCceECCCCCEEEEEeC
Confidence 1334443333333334233321 2235789999877665555444 445555555443 344 444433
Q ss_pred cCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 318 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
. .+.|.++|..+++-..........|.+.+ ++..+ +.+.+.+|+.+-.+ .+.|-++|..+.
T Consensus 362 ~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~--g~~~~-~p~~g~v~~t~~~g---~~~Vsvid~~~~ 422 (567)
T 1qks_A 362 A-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANFV-HPTFGPVWATSHMG---DDSVALIGTDPE 422 (567)
T ss_dssp G-----GTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEEE-ETTTEEEEEEEBSS---SSEEEEEECCTT
T ss_pred C-----CCeEEEEECCCCcEEEEEeccCcCCCCcc--ceeeE-CCCCCcEEEeCCCC---CCeEEEecCCCC
Confidence 2 35699999998864443322012233322 22223 23334566655322 225778877653
No 214
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=88.86 E-value=12 Score=33.11 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=82.6
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCC--CcEEEeeec---CCCCCCCcceEEEEE--CCEEEEEcccCCCCCcc
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAK---GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKL 223 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~---~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 223 (522)
+++..++++|+|=|.. +|+++... ......... ..+|.. .. ++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg~~--------~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG-------- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKDGK--------YWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp EEEEETTEEEEEETTE--------EEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET--------
T ss_pred EEEEeCCEEEEEECCE--------EEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC--------
Confidence 4556799999996642 89998765 233222111 235542 23 33333 678999966
Q ss_pred CcEEEEEcCCCcE-EEeecCCCCCCC--CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEE-----EeeeCCC
Q 009910 224 NDLHMFDLKSLTW-LPLHCTGTGPSP--RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIRGF 295 (522)
Q Consensus 224 ~~v~~yd~~t~~W-~~~~~~g~~p~~--r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~~~~~~ 295 (522)
+..|+|+..+..- ..+... .+|.. ....+.. ..+..+|+|-| +..|+||..+++=. .+... -
T Consensus 73 ~~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~-~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~-w 142 (195)
T 1itv_A 73 RQVWVYTGASVLGPRRLDKL-GLGADVAQVTGALR-SGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRM-F 142 (195)
T ss_dssp TEEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEE-CSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHH-S
T ss_pred CEEEEEcCCccCCCEEeeec-ccCCCccceeEEEE-cCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhc-C
Confidence 3477887542111 111111 23331 2333333 33445899866 36899998764311 01000 0
Q ss_pred CCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceE
Q 009910 296 HPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (522)
Q Consensus 296 ~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~ 338 (522)
+-.|..-.+|...++.+|++-| +..|+||..+.+=.
T Consensus 143 ~Gvp~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~v~ 178 (195)
T 1itv_A 143 PGVPLDTHDVFQFREKAYFCQD-------RFYWRVSSRSELNQ 178 (195)
T ss_dssp TTSCSSCSEEEEETTEEEEEET-------TEEEEEECCTTCCE
T ss_pred CCCCCCCCEEEEeCCeEEEEeC-------CEEEEEECCccEEe
Confidence 0112223455556899999987 45899998776533
No 215
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=88.83 E-value=16 Score=34.63 Aligned_cols=238 Identities=11% Similarity=0.044 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCC--cEEEeee
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEA 190 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~ 190 (522)
+.++++|+.+.+....... ..-..-+.++.. ++.||+..... ..+.+||+... .-..+..
T Consensus 69 ~~i~~~d~~~g~~~~~~~~-----------~~~~~p~gia~d~~g~l~v~d~~~------~~v~~~~~~g~~~~~~~~~~ 131 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK-----------NLFYLPHGLSIDTDGNYWVTDVAL------HQVFKLDPHSKEGPLLILGR 131 (329)
T ss_dssp CCEEEECTTTCCEEEEECT-----------TTCSSEEEEEECTTSCEEEEETTT------TEEEEECTTCSSCCSEEESB
T ss_pred CcEEEEECCCCeEEeccCC-----------CccCCceEEEECCCCCEEEEECCC------CEEEEEeCCCCeEEEEEecc
Confidence 4699999987665432211 000112333333 56788875432 35899998765 2222321
Q ss_pred cC---CCCCCC-cceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCC----CCCCc-ceEEEEECC
Q 009910 191 KG---DIPVAR-SGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG----PSPRS-NHVAALYDD 259 (522)
Q Consensus 191 ~~---~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~----p~~r~-~~~~~~~~~ 259 (522)
.+ .-.... .-..+++. ++.||+..++. .+.+.+||+....-..+...+.. +.... -+.+++-.+
T Consensus 132 ~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~ 206 (329)
T 3fvz_A 132 SMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206 (329)
T ss_dssp TTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred cCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence 00 001111 12234443 57999986521 24588999655443333211111 11111 223444443
Q ss_pred -cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCC--CCCcCeEEEEECCCCc
Q 009910 260 -KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR--KKRHAETLIFDILKGE 336 (522)
Q Consensus 260 -~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~--~~~~~~v~~yd~~~~~ 336 (522)
..|||.... .+.|.+||+++++....-... .....-.+.+...+.+|...|... ......++++|+.+.+
T Consensus 207 ~g~l~v~d~~-----~~~I~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 207 LDQLCVADRE-----NGRIQCFKTDTKEFVREIKHA--SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEECCT--TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEEecc--ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 568887643 246999999866654433221 122222233334567777766432 2233568999988877
Q ss_pred eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 337 W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
....-. +.. ........+++.. .+.|||.... .+.|.+|+++..
T Consensus 280 ~~~~~~-~~~--~~~~~p~~ia~~~--dG~lyvad~~----~~~I~~~~~~~~ 323 (329)
T 3fvz_A 280 IIDVFK-PVR--KHFDMPHDIVASE--DGTVYIGDAH----TNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEC-CSS--SCCSSEEEEEECT--TSEEEEEESS----SCCEEEEEEEEC
T ss_pred EEEEEc-CCC--CccCCeeEEEECC--CCCEEEEECC----CCEEEEEeCCcc
Confidence 655321 100 1112233444442 2468877654 336999998764
No 216
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=88.65 E-value=15 Score=33.96 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=102.0
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
+.|.++|+.+.+....-.. ..+...-.+++.. +++.++.|+.+. .+..+|..+++-.....
T Consensus 45 ~tV~iWd~~tg~~~~~~~~----------~~~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~~-- 106 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQM----------EQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT-- 106 (318)
T ss_dssp TEEEEEETTTCCEEEEEEC----------CSTTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEE--
T ss_pred CEEEEEECCCCCEEEEEEe----------cCCCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEEEec--
Confidence 4688899988766544321 1111111222222 567777777643 48889998886433321
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEE-ECCcEEEEEcCCCCC
Q 009910 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDKNLLIFGGSSKS 271 (522)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~~lyv~GG~~~~ 271 (522)
.... ........+.+++.|+.+. .+..++..+........ ... ......... ..+. +++.|+.++
T Consensus 107 -~h~~--~~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~-~l~s~~~d~- 172 (318)
T 4ggc_A 107 -SHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATL--SGH-SQEVCGLRWAPDGR-HLASGGNDN- 172 (318)
T ss_dssp -CCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEE--ECC-SSCEEEEEECTTSS-EEEEEETTS-
T ss_pred -Cccc--eEEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEE--cCc-cCceEEEEEcCCCC-EEEEEecCc-
Confidence 1111 1223334455666665432 24455555443322211 011 111112222 2344 566665543
Q ss_pred CCCCcEEEEEcCCCcE--EEeeeCCCCCCCccceEEEEE--CCEE-EEEcccCCCCCcCeEEEEECCCCceEEeccCCCC
Q 009910 272 KTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVLC--GTKW-YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (522)
Q Consensus 272 ~~~~~v~~yd~~~~~W--~~~~~~~~~p~~r~~~~~~~~--~~~i-yi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 346 (522)
.+.+||..+..- ....... .....-.+.+.. +..+ ++.+|... ..+.++|.....-.......
T Consensus 173 ----~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~i~lwd~~~~~~~~~~~~~-- 240 (318)
T 4ggc_A 173 ----LVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDAH-- 240 (318)
T ss_dssp ----CEEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTT----CEEEEEETTTCCEEEEEECS--
T ss_pred ----ceeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEecCCC----CEEEEEecccccccccccce--
Confidence 478888865431 1111110 000111112222 3333 34444322 34778888776654433211
Q ss_pred CCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 347 ~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.....+.... ....+++.+|... ..|.+||+.+.+
T Consensus 241 -----~~v~~~~~~~-~~~~~~~~sg~~d---~~i~iwd~~~~~ 275 (318)
T 4ggc_A 241 -----SQVCSILWSP-HYKELISGHGFAQ---NQLVIWKYPTMA 275 (318)
T ss_dssp -----SCEEEEEEET-TTTEEEEEECTTT---CCEEEEETTTCC
T ss_pred -----eeeeeeeecc-cccceEEEEEcCC---CEEEEEECCCCc
Confidence 1122333332 3345555555432 358899987665
No 217
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.25 E-value=20 Score=34.82 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=75.3
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCC--cEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
++.+++.|+.+. .+..||+... .-..+.. ..... .+++.. ++..++.|+.+.. +.+||+.
T Consensus 217 ~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~~----h~~~v-~~v~~~p~~~~l~s~s~D~~------i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCDT------TVRLWDLRITSRAVRTYHG----HEGDI-NSVKFFPDGQRFGTGSDDGT------CRLFDMR 279 (380)
T ss_dssp SCCEEEEEETTS------CEEEEETTTTCCCCEEECC----CSSCC-CEEEECTTSSEEEEECSSSC------EEEEETT
T ss_pred CCCEEEEEECCC------eEEEEECCCCCcceEEECC----cCCCe-EEEEEecCCCeEEEEcCCCe------EEEEECC
Confidence 567888887653 3788887632 1222211 11111 122222 4677777776543 8889998
Q ss_pred CCcEEEeecCCCC--CCCC-cceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEee-eCCCCCCCccceEEEE
Q 009910 233 SLTWLPLHCTGTG--PSPR-SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK-IRGFHPSPRAGCCGVL 307 (522)
Q Consensus 233 t~~W~~~~~~g~~--p~~r-~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~p~~r~~~~~~~ 307 (522)
+..-...-..... .... .-.+++.. ++. +++.|+.++ .+.+||..+..-.... .....-..+. .+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~ 352 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNG-----DCYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGL 352 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTS-----CEEEEETTTCCEEEEECCSCSSCCCCC-CEEEE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCC-----CEEEEECCCCceEEEEecccCCCCCce-EEEEE
Confidence 7654333210000 0000 11233333 455 666676543 5899998765543221 1100011111 12222
Q ss_pred -ECCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 308 -CGTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 308 -~~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
-+++.++.|+.++. +.++++...
T Consensus 353 s~dg~~l~sgs~D~~-----i~iW~~~~~ 376 (380)
T 3iz6_a 353 SSDGSALCTGSWDKN-----LKIWAFSGH 376 (380)
T ss_dssp CSSSSEEEEECTTSC-----EEEEECCSS
T ss_pred CCCCCEEEEeeCCCC-----EEEEecCCC
Confidence 26778888887654 777776543
No 218
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=88.08 E-value=18 Score=34.18 Aligned_cols=141 Identities=17% Similarity=0.120 Sum_probs=71.4
Q ss_pred ceeEEEEECCCCcE-EEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCC--c-cCcEEEEEcCCCcEEEeecCCCCCC
Q 009910 172 RVSVWTFDTETECW-SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR--K-LNDLHMFDLKSLTWLPLHCTGTGPS 247 (522)
Q Consensus 172 ~~~v~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--~-~~~v~~yd~~t~~W~~~~~~g~~p~ 247 (522)
...++++|+.+++. ..+.. + .....+...+.+++.+....... . ...++.+| +.++..+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~-- 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE---K-- 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE---E--
T ss_pred cceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc---C--
Confidence 45799999999887 66652 2 22233333433555554332111 2 45788888 777777652 1
Q ss_pred CCcceEEEEECCcEEEEEcCCCC--CCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcC
Q 009910 248 PRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 325 (522)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~ 325 (522)
.......-+++.|++.+.... ......++.+| ++.++.+... . ...........+.+|+.+...+ ..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~-~~~~~~~~~~sdg~~~~~~~~~---~~ 285 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE---V-DRGVGQAKIKDGKVYFTLFEEG---SV 285 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT---C-CSEEEEEEEETTEEEEEEEETT---EE
T ss_pred --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc---C-CcccCCccEEcCcEEEEEecCC---cE
Confidence 112222445653444432221 12345799999 6666655332 1 1111111222244776665443 24
Q ss_pred eEEEEECCCCceEEe
Q 009910 326 ETLIFDILKGEWSVA 340 (522)
Q Consensus 326 ~v~~yd~~~~~W~~~ 340 (522)
.+| ++ +.+...+
T Consensus 286 ~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 286 NLY-IW--DGEIKPI 297 (347)
T ss_dssp EEE-EE--SSSEEEE
T ss_pred EEE-Ec--CCceEEE
Confidence 577 77 3444444
No 219
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=87.59 E-value=19 Score=33.92 Aligned_cols=144 Identities=12% Similarity=0.118 Sum_probs=72.8
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
+.+++.|+.+. .+.+||..+........ +. ....-.+++.. ++..++.|+.+ ..+.+||+.+.
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~ 118 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKA---QQMHTGPVLDVCWSDDGSKVFTASCD------KTAKMWDLSSN 118 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEE---EEECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEE---eccccCCEEEEEECcCCCEEEEEcCC------CcEEEEEcCCC
Confidence 37788877642 47788877633222111 11 11111222222 46666677654 34889999888
Q ss_pred cEEEeecCCCCCCCCcceEEEE--ECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i 312 (522)
+..... .... .-.+++. ..+..+++.|+.++ .+.+||+.+..-...-.. + ....+.....+.+
T Consensus 119 ~~~~~~---~~~~--~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~---~--~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 119 QAIQIA---QHDA--PVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPMMVLQL---P--ERCYCADVIYPMA 183 (368)
T ss_dssp EEEEEE---ECSS--CEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCSEEEEC---S--SCEEEEEEETTEE
T ss_pred Cceeec---cccC--ceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEEEEEec---C--CCceEEEecCCee
Confidence 766553 1111 1122332 34444677776543 588999876542222111 1 1222333345544
Q ss_pred EEEcccCCCCCcCeEEEEECCCCc
Q 009910 313 YIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 313 yi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
++ ++.++ .+.+||.....
T Consensus 184 ~~-~~~~~-----~i~~~~~~~~~ 201 (368)
T 3mmy_A 184 VV-ATAER-----GLIVYQLENQP 201 (368)
T ss_dssp EE-EEGGG-----CEEEEECSSSC
T ss_pred EE-EeCCC-----cEEEEEecccc
Confidence 44 43332 37888876653
No 220
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=87.49 E-value=13 Score=33.14 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=76.1
Q ss_pred EEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC---CCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcE
Q 009910 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDL 277 (522)
Q Consensus 202 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v 277 (522)
+++..++.+|+|=| ..+|+++.....+...... ..+|. ... +|.... +..+|+|-|. .+
T Consensus 28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG~-------~~ 90 (207)
T 1pex_A 28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRGR-------KF 90 (207)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEETT-------EE
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEccC-------EE
Confidence 45567999999954 3367776654433322111 13443 222 233332 3348998763 57
Q ss_pred EEEEcCCCcE---EEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCC-----
Q 009910 278 YSLDFETMIW---TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS----- 347 (522)
Q Consensus 278 ~~yd~~~~~W---~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~----- 347 (522)
|+|+-.+..- +.+...|-+..+..--+|+.. ++++|+|-| +..|+||..+++-. ..-|...
T Consensus 91 w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d--~gyPr~i~~~~~ 161 (207)
T 1pex_A 91 WALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMD--KDYPRLIEEDFP 161 (207)
T ss_dssp EEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEEC--SSCCCBHHHHST
T ss_pred EEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCcccc--CCCCccHHHcCC
Confidence 8886332110 122222211111122233333 479999987 46899998765311 1111110
Q ss_pred CCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 348 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 348 ~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
..+. ..-++... .+.+|.|-|. ..|.||..+.+
T Consensus 162 Gip~-~iDaAf~~---~g~~YfFkg~------~y~rf~~~~~~ 194 (207)
T 1pex_A 162 GIGD-KVDAVYEK---NGYIYFFNGP------IQFEYSIWSNR 194 (207)
T ss_dssp TSCS-CCSEEEEE---TTEEEEEETT------EEEEEETTTTE
T ss_pred CCCC-CccEEEEc---CCcEEEEECC------EEEEEeCCccE
Confidence 0111 12222222 3568888776 48888876654
No 221
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=87.44 E-value=23 Score=39.89 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=112.7
Q ss_pred ECCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEE
Q 009910 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 97 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
.++.+++.+... ....+|.+++.+..-..+... .. .......-+++.++++. ...++
T Consensus 212 s~d~l~~~~~~d---g~~~l~~~~~~g~~~~~l~~~------------~~-~~~~~~SpDG~~la~~~-------~~~i~ 268 (1045)
T 1k32_A 212 VGHRIYFITDID---GFGQIYSTDLDGKDLRKHTSF------------TD-YYPRHLNTDGRRILFSK-------GGSIY 268 (1045)
T ss_dssp ETTEEEEEECTT---SSCEEEEEETTSCSCEECCCC------------CS-SCEEEEEESSSCEEEEE-------TTEEE
T ss_pred eCCEEEEEEecc---CceEEEEEeCCCCcceEecCC------------CC-cceeeEcCCCCEEEEEe-------CCEEE
Confidence 356666665432 234678888766554444331 11 11112233555444442 12588
Q ss_pred EEECCCCcEEEeeecCCC--C----CCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 009910 177 TFDTETECWSVVEAKGDI--P----VARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (522)
Q Consensus 177 ~yd~~t~~W~~~~~~~~~--p----~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 248 (522)
.+|+.+.....+...... + ....-.+++. -+++.++++. ...++.++..+.....+. ..+..
T Consensus 269 ~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-------~~~i~~~~~~~~~~~~~~---~~~~~ 338 (1045)
T 1k32_A 269 IFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-------RGQAFIQDVSGTYVLKVP---EPLRI 338 (1045)
T ss_dssp EECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-------TTEEEEECTTSSBEEECS---CCSCE
T ss_pred EecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-------cCEEEEEcCCCCceEEcc---CCCcc
Confidence 888866554433210000 0 0001223333 3455455543 235888888777655543 11211
Q ss_pred CcceEEEEECCcEEEEEcCCCCCCCCCcEE-EEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCe
Q 009910 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLY-SLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAE 326 (522)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~-~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~ 326 (522)
+....+.. +++.++ +++. ...+| ++|..+..-..+.. .... ....+.. +++.++++... .+
T Consensus 339 ~~~~~~~s-dg~~l~-~~s~-----~~~l~~~~d~~~~~~~~l~~----~~~~-~~~~~~SpDG~~la~~~~~-----~~ 401 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFI-HGTR-----EGDFLGIYDYRTGKAEKFEE----NLGN-VFAMGVDRNGKFAVVANDR-----FE 401 (1045)
T ss_dssp EEEEECSS-SEEEEE-EEET-----TEEEEEEEETTTCCEEECCC----CCCS-EEEEEECTTSSEEEEEETT-----SE
T ss_pred eEEeeeEc-CCCeEE-EEEC-----CCceEEEEECCCCCceEecC----Cccc-eeeeEECCCCCEEEEECCC-----Ce
Confidence 11222222 444344 3332 24788 99998876655531 1111 1222222 56666666543 36
Q ss_pred EEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCC------CCCCcEEEEEcccCC
Q 009910 327 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK------EPSNQVEVLSIEKNE 390 (522)
Q Consensus 327 v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~------~~~~~v~~y~~~~~~ 390 (522)
++++|+.+.+-..+..... .....+.+..+++ .+++++... .....++++|+.+.+
T Consensus 402 v~~~d~~tg~~~~~~~~~~------~~v~~~~~SpDG~--~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 402 IMTVDLETGKPTVIERSRE------AMITDFTISDNSR--FIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEETTTCCEEEEEECSS------SCCCCEEECTTSC--EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEEEECCCCceEEeccCCC------CCccceEECCCCC--eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999999888766542111 1112233333333 334443322 223578888887654
No 222
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=87.35 E-value=35 Score=36.80 Aligned_cols=267 Identities=16% Similarity=0.201 Sum_probs=136.6
Q ss_pred CCCceEEeeecCCCCCC-ccceEEEEE--C-CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCC--
Q 009910 72 NSENWMVLSIAGDKPIP-RFNHAAAVI--G-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP-- 145 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~-R~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-- 145 (522)
....|+.+.. .... |. +++++. + +.||+.. .. ..+|+.+-...+|+.+.... ...
T Consensus 9 ~~~~w~~~~~---~~~~g~i-~~i~~~p~~~~~~~~~~-~~-----ggv~rS~D~G~tW~~i~~~~---------~~~~~ 69 (737)
T 2cn3_A 9 VPYKWDNVVI---GGGGGFM-PGIVFNETEKDLIYARA-AI-----GGAYRWDPSTETWIPLLDHF---------QMDEY 69 (737)
T ss_dssp CCEEEEEECC---CSBCSCC-CEEEECSSSTTCEEEEC-SS-----SCEEEEETTTTEEEECCTTC---------CGGGG
T ss_pred CCCeeEEccc---CCCccee-eEEEECCCCCCEEEEEe-cC-----CcEEEeCCCCCCEEECcCcc---------Ccccc
Confidence 5568999962 1111 32 333332 2 4577743 11 36899988899999976520 000
Q ss_pred Cccc-eEEEEE---CCEEEEEcccCC--CCCCceeEEEEECCCCcEEEeeecCC----CCCCCcceEEEEE---CCEEEE
Q 009910 146 ACRG-HSLISW---GKKVLLVGGKTD--SGSDRVSVWTFDTETECWSVVEAKGD----IPVARSGHTVVRA---SSVLIL 212 (522)
Q Consensus 146 ~r~~-~~~~~~---~~~iyv~GG~~~--~~~~~~~v~~yd~~t~~W~~~~~~~~----~p~~r~~~~~~~~---~~~iyv 212 (522)
.... +++++. .+.||+..|... .......+++=.-.-.+|+.+..... +|.....+.+++. .+.||+
T Consensus 70 ~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~ 149 (737)
T 2cn3_A 70 SYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYL 149 (737)
T ss_dssp GGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEE
T ss_pred cCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEE
Confidence 0112 233333 267888765321 11112345555555578998864211 1211122445543 256666
Q ss_pred EcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC--------------cceEEEEECC---------cEEEEEcCCC
Q 009910 213 FGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR--------------SNHVAALYDD---------KNLLIFGGSS 269 (522)
Q Consensus 213 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r--------------~~~~~~~~~~---------~~lyv~GG~~ 269 (522)
-. ..+ ..+++=+=.-.+|+++. .+|... .+...+.++. ..||+.-+..
T Consensus 150 g~-~~g-----~gl~~S~DgG~tW~~~~---~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~ 220 (737)
T 2cn3_A 150 GT-RCG-----NGLWRSTDYGVTWSKVE---SFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADK 220 (737)
T ss_dssp EC-STT-----CCEEEESSTTSSCEECT---TCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCS
T ss_pred ee-ccC-----CcEEEeCCCCcceeccc---CCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCC
Confidence 32 110 23444333346899886 333210 1122233321 1366642111
Q ss_pred CCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCC----CCcCeEEEEECCCCceEEeccCC
Q 009910 270 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK----KRHAETLIFDILKGEWSVAITSP 344 (522)
Q Consensus 270 ~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~----~~~~~v~~yd~~~~~W~~~~~~p 344 (522)
. ..+++=.-...+|+.+... |.....+.++.. ++.+|+..+.... .....+|+++-...+|+.+...|
T Consensus 221 ~----~~v~~S~DgG~tW~~~~~~---p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~ 293 (737)
T 2cn3_A 221 N----ESIYRSTDGGVTWKAVPGQ---PKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIP 293 (737)
T ss_dssp S----CCEEEESSTTSCCEECTTC---CCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSC
T ss_pred C----ccEEEEcCCCCceEECCCC---CCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCC
Confidence 1 1255444446789998633 544444444433 6789987643211 13457999999999999987544
Q ss_pred CCCCCCCCCcEEEEEeeCCccEEEEEcCC
Q 009910 345 SSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (522)
Q Consensus 345 ~~~~~~r~~~~~~~~~~~~~~~l~v~GG~ 373 (522)
......+.+++.+++...+.+.||+.+..
T Consensus 294 ~~~~~~~~~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 294 YSSSDNRFCFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp TTSTTCCSEEEEEEECTTCTTCEEEEEEC
T ss_pred CCCcccccccccEEEcCCCCCEEEEEecc
Confidence 32112345566666665556778877653
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=87.15 E-value=8.6 Score=36.15 Aligned_cols=155 Identities=11% Similarity=-0.002 Sum_probs=77.7
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.||+.+-.. ..+++|++ +++.+.+.. +.. ....++. -+++||+.... ...+.+||++ .
T Consensus 56 g~~l~~~d~~~------~~i~~~~~-~g~~~~~~~----~~~-~~~gl~~d~dG~l~v~~~~------~~~v~~~~~~-g 116 (305)
T 3dr2_A 56 QRTLVWSDLVG------RRVLGWRE-DGTVDVLLD----ATA-FTNGNAVDAQQRLVHCEHG------RRAITRSDAD-G 116 (305)
T ss_dssp GTEEEEEETTT------TEEEEEET-TSCEEEEEE----SCS-CEEEEEECTTSCEEEEETT------TTEEEEECTT-S
T ss_pred CCEEEEEECCC------CEEEEEeC-CCCEEEEeC----CCC-ccceeeECCCCCEEEEECC------CCEEEEECCC-C
Confidence 45677775432 34889998 455554442 211 1223333 25778876311 2458889886 6
Q ss_pred cEEEeecCC-CCCCCCcceEEEEECCcEEEEE----cCCCC--------CCCCCcEEEEEcCCCcEEEeeeCCCCCCCcc
Q 009910 235 TWLPLHCTG-TGPSPRSNHVAALYDDKNLLIF----GGSSK--------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (522)
Q Consensus 235 ~W~~~~~~g-~~p~~r~~~~~~~~~~~~lyv~----GG~~~--------~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~ 301 (522)
+.+.+.... ..+..+ -...+.-.+..+|+. |-... ......|++||+++++.+.+. .. ..+
T Consensus 117 ~~~~~~~~~~~~~~~~-~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~--~~p-- 190 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNS-PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL--DHP-- 190 (305)
T ss_dssp CEEEEECEETTEECSC-CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE--SSE--
T ss_pred CEEEEEeccCCCccCC-CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC--CCC--
Confidence 666553110 111111 122344444447774 42210 112357999999888887764 21 111
Q ss_pred ceEEEEE-CC-EEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 302 GCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 302 ~~~~~~~-~~-~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
.+.+.. ++ .||+............|++||+....
T Consensus 191 -~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 191 -NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp -EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred -cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 122332 33 58877543211122569999987654
No 224
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=87.11 E-value=15 Score=32.38 Aligned_cols=153 Identities=17% Similarity=0.212 Sum_probs=81.1
Q ss_pred EEEEECCEEEEEcCcCCCCCcccEEEEEcCC--CcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCC
Q 009910 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDS 168 (522)
Q Consensus 93 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 168 (522)
+++.+++++|+|=| +.+|+++... ......... ..-+ .+|.... |+... ++++|+|-|.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is-~~w~-----glP~~ID-Aa~~~~~~~~~yfFkG~--- 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIA-DKWP-----ALPRKLD-SVFEEPLSKKLFFFSGR--- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHH-HHCT-----TSCSSCS-EEEECTTTCCEEEEETT---
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhh-hccC-----CCCCCcc-EEEEECCCCeEEEEeCC---
Confidence 34557899999976 5578887655 222221110 0001 1222222 33333 6889999774
Q ss_pred CCCceeEEEEECCCCcEEEeeecC-CCCC--CCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEE-----ee
Q 009910 169 GSDRVSVWTFDTETECWSVVEAKG-DIPV--ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-----LH 240 (522)
Q Consensus 169 ~~~~~~v~~yd~~t~~W~~~~~~~-~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-----~~ 240 (522)
.+|+|+..+..- ...... .+|. .....+....++++|+|-| +..|+||..+++-.. +.
T Consensus 74 -----~yw~~~~~~~~~-Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gyPr~i~ 139 (195)
T 1itv_A 74 -----QVWVYTGASVLG-PRRLDKLGLGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASEVD 139 (195)
T ss_dssp -----EEEEEETTEEEE-EEEGGGGTCCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEEHH
T ss_pred -----EEEEEcCCccCC-CEEeeecccCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCCccChh
Confidence 389998653211 111000 2343 2344444433589999965 357999987654211 11
Q ss_pred -cCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 241 -CTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 241 -~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
.-..+|. .-.+|...++. +|+|-|. ..|+||..+..
T Consensus 140 ~~w~Gvp~--~idaa~~~~g~-~Yffkg~-------~y~~~~~~~~~ 176 (195)
T 1itv_A 140 RMFPGVPL--DTHDVFQFREK-AYFCQDR-------FYWRVSSRSEL 176 (195)
T ss_dssp HHSTTSCS--SCSEEEEETTE-EEEEETT-------EEEEEECCTTC
T ss_pred hcCCCCCC--CCCEEEEeCCe-EEEEeCC-------EEEEEECCccE
Confidence 0012232 22345455655 8998773 68999987664
No 225
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=86.81 E-value=23 Score=34.16 Aligned_cols=157 Identities=13% Similarity=0.041 Sum_probs=78.3
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
++++.++++...+ ..+.++|+.+.+-.... ..... -.+++...+..+++.|+. +.+.+++..++.
T Consensus 144 Dg~~la~as~~~d----~~i~iwd~~~~~~~~~~---~~~~~--V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~ 208 (365)
T 4h5i_A 144 EGTVAAIASSKVP----AIMRIIDPSDLTEKFEI---ETRGE--VKDLHFSTDGKVVAYITG------SSLEVISTVTGS 208 (365)
T ss_dssp TSSCEEEEESCSS----CEEEEEETTTTEEEEEE---ECSSC--CCEEEECTTSSEEEEECS------SCEEEEETTTCC
T ss_pred CCCEEEEEECCCC----CEEEEeECCCCcEEEEe---CCCCc--eEEEEEccCCceEEeccc------eeEEEEEeccCc
Confidence 4555554432221 35888999887654432 11111 223444444435666542 357788877765
Q ss_pred EEEeeeCCCCCCCccceEEE--EECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCc
Q 009910 287 WTRIKIRGFHPSPRAGCCGV--LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 364 (522)
Q Consensus 287 W~~~~~~~~~p~~r~~~~~~--~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~ 364 (522)
....... ........++ .-+++.++.++.++.. ...++.+|............... .......++.+..+
T Consensus 209 ~~~~~~~---~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spd-- 280 (365)
T 4h5i_A 209 CIARKTD---FDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMK-- 280 (365)
T ss_dssp EEEEECC---CCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTT--
T ss_pred ceeeeec---CCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeeeec--CCCCCeEeEEECCC--
Confidence 5433322 1111112222 2378888877755431 12466677666555432211100 11122334444433
Q ss_pred cEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 365 DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 365 ~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.+++.|+.++ .|.+||.++.+
T Consensus 281 g~~lasgs~D~----~V~iwd~~~~~ 302 (365)
T 4h5i_A 281 GELAVLASNDN----SIALVKLKDLS 302 (365)
T ss_dssp SCEEEEEETTS----CEEEEETTTTE
T ss_pred CCceEEEcCCC----EEEEEECCCCc
Confidence 34778888754 58999987765
No 226
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=86.74 E-value=23 Score=34.71 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=81.3
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
++.+++.|+.+. .+..||+.+.+-...-. .+ ....-.+++.. ++.+++.|+.++ .+.+||+.+
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~ 245 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLERLQIIE---NSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF 245 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCCEEEEEE---CCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeEEEc---cCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence 467777777542 58899998876433221 11 11112222222 567777777653 488999988
Q ss_pred CcEEEeecCCCCCCCCcceEEEEE----CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCC-C-------CC----
Q 009910 234 LTWLPLHCTGTGPSPRSNHVAALY----DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-F-------HP---- 297 (522)
Q Consensus 234 ~~W~~~~~~g~~p~~r~~~~~~~~----~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~-~-------~p---- 297 (522)
.+....- ..+....-.+++.. .+..+++.|+.++ .+.+||+.+..-...-... . .|
T Consensus 246 ~~~~~~~---~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 246 NVLIRSW---SFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp TEEEEEE---BCTTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred ccEEEEE---ecCCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence 6554321 11111111111111 2343566665443 5889998766533222110 0 01
Q ss_pred ----------CCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceE
Q 009910 298 ----------SPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (522)
Q Consensus 298 ----------~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~ 338 (522)
....-.+++..++++++.||.++. |.+||+.+.+-.
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~ 363 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATSS-----IVMFSLNELSSS 363 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTE-----EEEEETTCGGGC
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCCe-----EEEEECCCcccc
Confidence 011112334447888888887654 899998876533
No 227
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=86.28 E-value=27 Score=34.42 Aligned_cols=184 Identities=16% Similarity=0.239 Sum_probs=102.9
Q ss_pred CCCCceEEeeecCCCCCCccceEEEEECCEEEEEcCcCCCCCcccEEEEEcC-------CCcEEEcccccccCCCCCCCC
Q 009910 71 GNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD-------RFSWTAASSKLYLSPSSLPLK 143 (522)
Q Consensus 71 ~~~~~W~~l~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-------~~~W~~~~~~~~~~~~~~~~~ 143 (522)
.....|+.-... ..|..-.-|+.+.+++.=|.+|=..++....++=.+-.. ...=+.++.. -
T Consensus 267 F~~spW~~t~L~-~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se----------y 335 (670)
T 3ju4_A 267 FHKSPWRKTDLG-LIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE----------Y 335 (670)
T ss_dssp STTSCCEEEECC-SCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG----------G
T ss_pred eccCCceecccc-cccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhh----------h
Confidence 356677766532 456667788999999888888854444433443222111 1122333331 1
Q ss_pred CCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcc--eEEEEECCEEEEEcccCCCC-
Q 009910 144 IPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVRASSVLILFGGEDGKR- 220 (522)
Q Consensus 144 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~- 220 (522)
.+...-.++-.+++.||+.--...+...-+.+.+-+.....|+.+. .|..... .-.+..++.||+||-....+
T Consensus 336 ~~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~nE 411 (670)
T 3ju4_A 336 EPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR----FPHNVHHTTLPFAKVGDDLIMFGSERAENE 411 (670)
T ss_dssp CTTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE----CTTCCCSSCCCEEEETTEEEEEEECSSTTC
T ss_pred ccccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhhee----ccccccccCCCcceeCCEEEEEeccccccc
Confidence 2223345666779999998544334444567888888889999987 4533222 12456799999999653211
Q ss_pred --------Cc---cCcEEE--EE-----cCCCcEEEeec---CCCCCCCCcceEEEEECCc-EEEEEcCCC
Q 009910 221 --------RK---LNDLHM--FD-----LKSLTWLPLHC---TGTGPSPRSNHVAALYDDK-NLLIFGGSS 269 (522)
Q Consensus 221 --------~~---~~~v~~--yd-----~~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~-~lyv~GG~~ 269 (522)
++ ....+. .+ .+.-+|..+.. .|..-..-.+...+++.+. ..|+|||.+
T Consensus 412 WE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd 482 (670)
T 3ju4_A 412 WEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 482 (670)
T ss_dssp SSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred cccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcc
Confidence 11 111222 22 23345776642 2333333344455555555 557999974
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=86.08 E-value=39 Score=36.02 Aligned_cols=148 Identities=15% Similarity=0.089 Sum_probs=80.5
Q ss_pred eeEEEEECCCC--cEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCC---cEEEeecCCCCCC
Q 009910 173 VSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPS 247 (522)
Q Consensus 173 ~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~g~~p~ 247 (522)
+++|.+|..+. +|..+.. +...........++.||+....+. ....++.+|+.+. .|+.+.+. ..
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~---~~ 328 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPE---RQ 328 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECC---CS
T ss_pred cEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecC---CC
Confidence 57999998776 6887763 211122223446789999875432 2457999998763 48887521 11
Q ss_pred CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE---CCEEEEEcccCCCCCc
Q 009910 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRH 324 (522)
Q Consensus 248 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~ 324 (522)
.. . .. ...++.|++..-.+. ...++++|++....+.+.. |.... ...... ++.+++... ....-
T Consensus 329 ~~-~-~~-s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~~----p~~~~-~~~~~~~~d~~~l~~~~s--s~~tP 395 (693)
T 3iuj_A 329 QV-L-TV-HSGSGYLFAEYMVDA---TARVEQFDYEGKRVREVAL----PGLGS-VSGFNGKHDDPALYFGFE--NYAQP 395 (693)
T ss_dssp SC-E-EE-EEETTEEEEEEEETT---EEEEEEECTTSCEEEEECC----SSSSE-EEECCCCTTCSCEEEEEE--CSSSC
T ss_pred CE-E-EE-EEECCEEEEEEEECC---eeEEEEEECCCCeeEEeec----CCCce-EEeeecCCCCCEEEEEec--CCCCC
Confidence 11 1 33 333443444322111 3468999988665555432 22111 111111 234444322 11223
Q ss_pred CeEEEEECCCCceEEeccC
Q 009910 325 AETLIFDILKGEWSVAITS 343 (522)
Q Consensus 325 ~~v~~yd~~~~~W~~~~~~ 343 (522)
..++.||+.+.+++.+...
T Consensus 396 ~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 396 PTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp CEEEEECTTTCCEEEEECC
T ss_pred CEEEEEECCCCeEEEEEeC
Confidence 5799999988888776643
No 229
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=85.29 E-value=30 Score=34.07 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=70.6
Q ss_pred EEEEcccCCCCCccCcEEEEEcCCC---cEEEeecCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 210 LILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 210 iyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
+++.|+.++ .+.+||+.+. .+..............-.+++... +..+++.|+.+ ..+.+||+.+.
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~ 264 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNN 264 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCS
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 777776543 3888898762 222110000001111222333332 33366666543 35899998765
Q ss_pred c----EEEeeeCCCCCCCccceEEEEE---CCEEEEEcccCCCCCcCeEEEEECCCCc--eEEeccCCCCCCCCCCCcEE
Q 009910 286 I----WTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTL 356 (522)
Q Consensus 286 ~----W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~~~~r~~~~~ 356 (522)
. -..+.. . .....++.+ +..+++.|+.++ .|.+||+.+.. -..+.. .......
T Consensus 265 ~~~~~~~~~~~-----~-~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~~-------h~~~v~~ 326 (430)
T 2xyi_A 265 NTSKPSHTVDA-----H-TAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFES-------HKDEIFQ 326 (430)
T ss_dssp CSSSCSEEEEC-----C-SSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEEC-------CSSCEEE
T ss_pred CCCcceeEeec-----C-CCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEeec-------CCCCEEE
Confidence 2 111211 1 111222233 334788888664 38899987632 111111 1112333
Q ss_pred EEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 357 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 357 ~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
+.+...+ ..+++.||.++ .|.+||+...
T Consensus 327 i~~sp~~-~~~l~s~~~d~----~i~iwd~~~~ 354 (430)
T 2xyi_A 327 VQWSPHN-ETILASSGTDR----RLHVWDLSKI 354 (430)
T ss_dssp EEECSSC-TTEEEEEETTS----CCEEEEGGGT
T ss_pred EEECCCC-CCEEEEEeCCC----cEEEEeCCCC
Confidence 4443323 34677777543 5888888763
No 230
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=85.22 E-value=25 Score=34.51 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=57.1
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCC-CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
++.+++.|+.++ .+.+||+.+.+-...- ..+ ....-.+++...+..+++.|+.++ .+.+||+.+.
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~ 246 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFN 246 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCc
Confidence 367777776543 4889999876643322 111 112222333333343677776653 5999999876
Q ss_pred cEEEeeeCCCCCCCccceEEEEE-----CCEEEEEcccCCCCCcCeEEEEECCCCce
Q 009910 286 IWTRIKIRGFHPSPRAGCCGVLC-----GTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (522)
Q Consensus 286 ~W~~~~~~~~~p~~r~~~~~~~~-----~~~iyi~GG~~~~~~~~~v~~yd~~~~~W 337 (522)
.....-.. +....-.+++.. ++.+++.|+.++ .+.+||+.+.+-
T Consensus 247 ~~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~ 295 (437)
T 3gre_A 247 VLIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHC 295 (437)
T ss_dssp EEEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEE
T ss_pred cEEEEEec---CCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcE
Confidence 54332211 111111111111 244666665543 488999887653
No 231
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=84.86 E-value=6.5 Score=34.89 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=78.6
Q ss_pred EEEECCEEEEEcCcCCCCCcccEEEEEcCCCc---EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCC
Q 009910 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFS---WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS 170 (522)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 170 (522)
++.+++++|+|-| +.+|+++..... =..+... -+ .+|....++....++++|+|-|.
T Consensus 11 ~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~---w~-----glP~~iDAa~~~~~g~~yfFkg~----- 70 (196)
T 3c7x_A 11 VAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQF---WR-----GLPASINTAYERKDGKFVFFKGD----- 70 (196)
T ss_dssp EEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHH---ST-----TCCSSCCEEEECTTSCEEEEETT-----
T ss_pred EEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHh---cc-----CCCCCccEEEEeCCCcEEEecCC-----
Confidence 4467899999987 567887532100 0111110 00 12333333332346889999663
Q ss_pred CceeEEEEECCCCcE---EEeeecC-CCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEE-----ee
Q 009910 171 DRVSVWTFDTETECW---SVVEAKG-DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-----LH 240 (522)
Q Consensus 171 ~~~~v~~yd~~t~~W---~~~~~~~-~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-----~~ 240 (522)
.+|+|+..+... ..+.... .+|..+...+... .++++|+|=| +..|+||..+++-.. +.
T Consensus 71 ---~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG--------~~yw~yd~~~~~v~~gyPk~i~ 139 (196)
T 3c7x_A 71 ---KHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG--------NKYYRFNEELRAVDSEYPKNIK 139 (196)
T ss_dssp ---EEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECTTCSEEGG
T ss_pred ---EEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC--------CEEEEEeCCcccccCCCCccHH
Confidence 389998542110 1121111 2554444433332 2589999965 347999987653211 11
Q ss_pred cCCCCCCCCcceEEEEECCc-EEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 241 CTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 241 ~~g~~p~~r~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
.-..+|. .-.+|....+. .+|+|-| +..|+||..+.+
T Consensus 140 ~~~gip~--~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 140 VWEGIPE--SPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp GSBTCCS--SCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred HCCCcCC--CcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 0012222 22344444332 5899866 368999987653
No 232
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=84.18 E-value=31 Score=33.25 Aligned_cols=182 Identities=9% Similarity=-0.032 Sum_probs=91.0
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
..+.++|+.+.+....... ...- .+++. -++++++.|+.+ .+.+++..++........
T Consensus 157 ~~i~iwd~~~~~~~~~~~~------------~~~V-~~v~fspdg~~l~s~s~~-------~~~~~~~~~~~~~~~~~~- 215 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIET------------RGEV-KDLHFSTDGKVVAYITGS-------SLEVISTVTGSCIARKTD- 215 (365)
T ss_dssp CEEEEEETTTTEEEEEEEC------------SSCC-CEEEECTTSSEEEEECSS-------CEEEEETTTCCEEEEECC-
T ss_pred CEEEEeECCCCcEEEEeCC------------CCce-EEEEEccCCceEEeccce-------eEEEEEeccCcceeeeec-
Confidence 4678899988765433221 0111 12222 256666666532 377788877765443320
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCC-CCcceEEEEECCcEEEEEcCCCCC
Q 009910 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKS 271 (522)
Q Consensus 193 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~lyv~GG~~~~ 271 (522)
.............-++..++.++.+... ...++.+|............ .+.. ...-.+++...+..+++.|+.++
T Consensus 216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~- 291 (365)
T 4h5i_A 216 FDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDN- 291 (365)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTS-
T ss_pred CCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCC-
Confidence 0111111112223467888887765542 23467777766655433210 1111 11112333334444777787654
Q ss_pred CCCCcEEEEEcCCCcEEEeeeCCCCCCC-ccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 272 KTLNDLYSLDFETMIWTRIKIRGFHPSP-RAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 272 ~~~~~v~~yd~~~~~W~~~~~~~~~p~~-r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
.|.+||.++.+- +... ... ...-.++.+ ++++++.|+.++. |.++|+..
T Consensus 292 ----~V~iwd~~~~~~--~~~~---~~gH~~~V~~v~fSpdg~~laS~S~D~t-----vrvw~ip~ 343 (365)
T 4h5i_A 292 ----SIALVKLKDLSM--SKIF---KQAHSFAITEVTISPDSTYVASVSAANT-----IHIIKLPL 343 (365)
T ss_dssp ----CEEEEETTTTEE--EEEE---TTSSSSCEEEEEECTTSCEEEEEETTSE-----EEEEECCT
T ss_pred ----EEEEEECCCCcE--EEEe---cCcccCCEEEEEECCCCCEEEEEeCCCe-----EEEEEcCC
Confidence 489999887642 2221 111 111223333 6788888876654 77888643
No 233
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=83.68 E-value=34 Score=33.35 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=40.7
Q ss_pred CCEEEEEcccCC----CCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEE
Q 009910 309 GTKWYIAGGGSR----KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (522)
Q Consensus 309 ~~~iyi~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y 384 (522)
++++|+...... ....++|+++|+.+.+-.. ..+. ....+++ .+..+++..+|+..+. .+.|.++
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~--~i~~----g~~p~~i-~~s~Dg~~~l~v~~~~----~~~V~Vi 346 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS--QISL----GHDVDAI-SVAQDGGPDLYALSAG----TEVLHIY 346 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE--EEEC----CCCcCeE-EECCCCCeEEEEEcCC----CCeEEEE
Confidence 578998754211 1234689999998866432 2121 1122333 3333333356665422 2579999
Q ss_pred EcccCCcc
Q 009910 385 SIEKNESS 392 (522)
Q Consensus 385 ~~~~~~w~ 392 (522)
|..+.+-.
T Consensus 347 D~~t~~vv 354 (373)
T 2mad_H 347 DAGAGDQD 354 (373)
T ss_pred ECCCCCEE
Confidence 99887643
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=83.58 E-value=30 Score=32.57 Aligned_cols=207 Identities=11% Similarity=-0.064 Sum_probs=102.8
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCC
Q 009910 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTD 167 (522)
Q Consensus 92 ~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 167 (522)
+++++. ++.|||.-.. +.+++||+.+...+.+..... ..+...-..++.. ++.||+.-....
T Consensus 83 ~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~~--------~~~~~~p~~i~~d~~~G~l~v~d~~~~ 148 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSVD--------GVPFKWLYAVTVDQRTGIVYFTDVSTL 148 (322)
T ss_dssp EEEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEET--------TEECSCEEEEEECTTTCCEEEEESCSS
T ss_pred ceEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccCC--------CCcccccceEEEecCCCEEEEECCccc
Confidence 455555 4789987421 247889988765554432100 0001112333333 468888632110
Q ss_pred C-----------CCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-C-CEEEEEcccCCCCCccCcEEEEEcCC-
Q 009910 168 S-----------GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKS- 233 (522)
Q Consensus 168 ~-----------~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~t- 233 (522)
. ......+++||+.+.+.+.+.. .+. ....++.. + +.||+.-. ..+.+++|++..
T Consensus 149 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~---~p~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 149 YDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--ELH---VPGGAEVSADSSFVLVAEF------LSHQIVKYWLEGP 217 (322)
T ss_dssp CCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--EES---CCCEEEECTTSSEEEEEEG------GGTEEEEEESSST
T ss_pred ccccccceehcccCCCceEEEEeCCCCEEEEecc--CCc---cCcceEECCCCCEEEEEeC------CCCeEEEEECCCC
Confidence 0 1123569999999887665532 111 12233443 3 35888621 135689999875
Q ss_pred --CcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCC-----CCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEE
Q 009910 234 --LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS-----KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (522)
Q Consensus 234 --~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~-----~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~ 306 (522)
.+.+... ..+.| ..+++-.+..|||.-..... .....+.+||++...-..+......+ .....+++
T Consensus 218 ~~~~~~~~~---~~~gP---~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~ 290 (322)
T 2fp8_A 218 KKGTAEVLV---KIPNP---GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQ 290 (322)
T ss_dssp TTTCEEEEE---ECSSE---EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEE
T ss_pred cCCccceEE---eCCCC---CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEE
Confidence 2344433 12211 22333333347776422100 01245899999765555554321111 12222334
Q ss_pred EECCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 307 LCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 307 ~~~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
..+++|||.+... +.|.+|++..+
T Consensus 291 ~~~g~L~v~~~~~-----~~i~~~~~~~~ 314 (322)
T 2fp8_A 291 EHDGLLYIGTLFH-----GSVGILVYDKK 314 (322)
T ss_dssp EETTEEEEECSSC-----SEEEEEEC---
T ss_pred EeCCEEEEeecCC-----CceEEEecccc
Confidence 4588999875432 45888887543
No 235
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=83.22 E-value=30 Score=32.43 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=57.5
Q ss_pred CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
+.+++.|+.++ .+.+||+.+.+-...- .. ....-.+++... +..+++.|+.++ .+.+||+.+..
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~ 149 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHY---VG-HGNAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDT 149 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEE---ES-CCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTTE
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeee---cC-CCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecCe
Confidence 57888887543 4888998876533221 10 111122233332 333677776543 59999998775
Q ss_pred EEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 287 WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 287 W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
-...-.. .......-.+++.. ++..++.|+.++. +.+||+.+.+
T Consensus 150 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~ 194 (366)
T 3k26_A 150 LVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMDHS-----LKLWRINSKR 194 (366)
T ss_dssp EEEEECS-TTSCSSCEEEEEECTTSSEEEEEETTSC-----EEEEESCSHH
T ss_pred EEEEecc-cccccCceeEEEECCCCCEEEEecCCCC-----EEEEECCCCc
Confidence 4433210 00111112222222 5667777776544 8899987653
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=83.09 E-value=40 Score=33.72 Aligned_cols=121 Identities=11% Similarity=-0.041 Sum_probs=61.1
Q ss_pred CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccC---CCCCCceeE
Q 009910 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT---DSGSDRVSV 175 (522)
Q Consensus 99 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~v 175 (522)
+.+||.-....... +.+.++|+.+++=...-+.+ .. + +.++...++.+|+.--.. ..+...+.|
T Consensus 85 ~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~vG---------~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 85 RRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDGG---------FL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp TEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEEC---------SS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEECCCcCCCC-CeEEEEECCCCEEEEEEECC---------CC-C--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 55777654222112 78999999987543332211 11 1 222222256788863110 011123569
Q ss_pred EEEECCCCcEE-EeeecCCCC--CCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEE
Q 009910 176 WTFDTETECWS-VVEAKGDIP--VARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (522)
Q Consensus 176 ~~yd~~t~~W~-~~~~~~~~p--~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 237 (522)
.++|+.+.+-. .+...+... ....-+.+++ .+.++|+..- ...+.+.++|+.+++-.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~-----~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF-----SPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC-----SSSCEEEEEETTTTEEE
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec-----CCCCeEEEEECCCCeEE
Confidence 99999998753 333210000 0011223333 3457888621 12467999999887643
No 237
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=82.10 E-value=35 Score=32.29 Aligned_cols=145 Identities=10% Similarity=0.009 Sum_probs=76.9
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.+|+++... ..+++||+.+++...+. .+. . -.+++ .-++++++... +.+++||+.+.
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~----~~~-~-v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g 119 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHA----LPF-M-GSALAKISDSKQLIASD--------DGLFLRDTATG 119 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEE----CSS-C-EEEEEEEETTEEEEEET--------TEEEEEETTTC
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEE----CCC-c-ceEEEEeCCCeEEEEEC--------CCEEEEECCCC
Confidence 36788876432 25999999988766554 222 1 22233 34678877531 24999999999
Q ss_pred cEEEeecCCC-CCCCCcceEEEEECCcEEEEEcC-CCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CC-
Q 009910 235 TWLPLHCTGT-GPSPRSNHVAALYDDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT- 310 (522)
Q Consensus 235 ~W~~~~~~g~-~p~~r~~~~~~~~~~~~lyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~- 310 (522)
+.+.+..... .+..+. ...+.-.+..+|+... .........+++++ +++.+.+.... . ...+.+.. ++
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~--~---~~~~i~~s~dg~ 191 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRS-NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADI--S---IPNSICFSPDGT 191 (326)
T ss_dssp CEEEEECSSTTCTTEEE-EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEE--S---SEEEEEECTTSC
T ss_pred cEEEEeeCCCCCCCCCC-CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCC--c---ccCCeEEcCCCC
Confidence 8877652111 111121 2233333333665321 11112345799999 46665543210 1 11122332 34
Q ss_pred EEEEEcccCCCCCcCeEEEEECC
Q 009910 311 KWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 311 ~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
.+|+..... ..|++||..
T Consensus 192 ~lyv~~~~~-----~~I~~~d~~ 209 (326)
T 2ghs_A 192 TGYFVDTKV-----NRLMRVPLD 209 (326)
T ss_dssp EEEEEETTT-----CEEEEEEBC
T ss_pred EEEEEECCC-----CEEEEEEcc
Confidence 677764322 469999975
No 238
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=81.84 E-value=33 Score=34.64 Aligned_cols=154 Identities=10% Similarity=0.042 Sum_probs=82.6
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec---CCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCc
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 225 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 225 (522)
+++..++++|+|-|.. +|+++.....+...... ..+|.. .. ++... ++++|+|=| +.
T Consensus 267 Ai~~~~ge~y~Fkg~~--------~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg--------~~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG--------NK 328 (450)
T ss_dssp EEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET--------TE
T ss_pred eEEecCCeEEEEeCCE--------EEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC--------CE
Confidence 5667899999997743 78887665544432221 124432 22 33332 689999955 34
Q ss_pred EEEEEcCCC--cE-EEee-cCCCCCC--CCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEE-----EeeeC
Q 009910 226 LHMFDLKSL--TW-LPLH-CTGTGPS--PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIR 293 (522)
Q Consensus 226 v~~yd~~t~--~W-~~~~-~~g~~p~--~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-----~~~~~ 293 (522)
+|+|+..+. .+ ..+. .. .+|. .... +|... .+..+|+|-| +..|+||..+.+-. .+..
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~-g~P~~~~~ID-AA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~- 398 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSF-GFPRTVKHID-AALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAH- 398 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHH-CCCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHH-
T ss_pred EEEecCCcccCCCceeeehhh-cCCCCCCccc-eEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhh-
Confidence 777764320 00 1111 01 1232 1223 23333 2345898876 37999997654211 1110
Q ss_pred CCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 294 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 294 ~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
.-+-.+..--+|+..++++|+|-| +..|+||..+.+-..
T Consensus 399 ~fpgip~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 399 DFPGIGHKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 437 (450)
T ss_dssp HSTTSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred cCCCCCCCccEEEEcCCeEEEEeC-------CEEEEEECCcceEec
Confidence 000112223345556899999987 458999988776544
No 239
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=81.71 E-value=40 Score=34.70 Aligned_cols=155 Identities=7% Similarity=-0.025 Sum_probs=76.9
Q ss_pred CEEEEEcccCCCCCccCcEEEEEc--CCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 208 SVLILFGGEDGKRRKLNDLHMFDL--KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 208 ~~iyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
+++++.+..... .....+|..++ ....- .+. ..+..+ ..+...+++.+++..+.. +.+.+||++++
T Consensus 75 d~~l~~~~~~~g-~~~~~l~~~~~~~~g~~~-~l~---~~~~~~--~~~~s~dg~~~~~~s~~~-----~~~~l~d~~~g 142 (582)
T 3o4h_A 75 GRVILVRDVSKG-AEQHALFKVNTSRPGEEQ-RLE---AVKPMR--ILSGVDTGEAVVFTGATE-----DRVALYALDGG 142 (582)
T ss_dssp SEEEEEEECSTT-SCCEEEEEEETTSTTCCE-ECT---TSCSBE--EEEEEECSSCEEEEEECS-----SCEEEEEEETT
T ss_pred CeEEEEeccCCC-CcceEEEEEeccCCCccc-ccc---CCCCce--eeeeCCCCCeEEEEecCC-----CCceEEEccCC
Confidence 455554443111 12346777887 43322 332 222222 334444554344443322 23557899888
Q ss_pred cEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCcc
Q 009910 286 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (522)
Q Consensus 286 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~ 365 (522)
.-+.+... +. ...+..-+++.+++++.+.. ....++++|+.+.+++.+...+ .......+..++ .
T Consensus 143 ~~~~l~~~---~~---~~~~~spDG~~la~~~~~~~-~~~~i~~~d~~~g~~~~l~~~~-------~~~~~~~~SpDG-~ 207 (582)
T 3o4h_A 143 GLRELARL---PG---FGFVSDIRGDLIAGLGFFGG-GRVSLFTSNLSSGGLRVFDSGE-------GSFSSASISPGM-K 207 (582)
T ss_dssp EEEEEEEE---SS---CEEEEEEETTEEEEEEEEET-TEEEEEEEETTTCCCEEECCSS-------CEEEEEEECTTS-C
T ss_pred cEEEeecC---CC---ceEEECCCCCEEEEEEEcCC-CCeEEEEEcCCCCCceEeecCC-------CccccceECCCC-C
Confidence 87777653 22 11222235555555543321 1245999999999988765321 112333444333 3
Q ss_pred EEEEEcCCCCCCCCcEEEEEcccCCcc
Q 009910 366 FLVAFGGIKKEPSNQVEVLSIEKNESS 392 (522)
Q Consensus 366 ~l~v~GG~~~~~~~~v~~y~~~~~~w~ 392 (522)
.|+ .+..++ ...++++|+++.+..
T Consensus 208 ~l~-~~~~~~--~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 208 VTA-GLETAR--EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEE-EEECSS--CEEEEEECTTTCCEE
T ss_pred EEE-EccCCC--eeEEEEEcCCCCcEE
Confidence 444 333222 246888888776543
No 240
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=80.98 E-value=59 Score=34.33 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCc-EEEeecCCCCC-CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEee
Q 009910 224 NDLHMFDLKSLT-WLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 291 (522)
Q Consensus 224 ~~v~~yd~~t~~-W~~~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 291 (522)
..++++|+.+.+ ...+....... ........+...+..++++.... ......++++|+.+++...+.
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-AQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-TSCEEEEEEEETTTCCEEEEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC-CCCeEEEEEEeCCCCcceEEE
Confidence 378899998776 24443100000 01111223333444355443221 122356899999888766653
No 241
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=80.89 E-value=37 Score=31.75 Aligned_cols=244 Identities=9% Similarity=-0.024 Sum_probs=121.6
Q ss_pred CCceEEeeecCCCCCCccceEEEEE-CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceE
Q 009910 73 SENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS 151 (522)
Q Consensus 73 ~~~W~~l~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~ 151 (522)
....+.+. ..|.+......++. ++.||+.--. ...+++||+.+.. ..... .+. .-+.
T Consensus 19 ~~~~~~~~---~~p~~~~pegia~~~~g~lyv~d~~-----~~~I~~~d~~g~~-~~~~~------------~~~-~p~g 76 (306)
T 2p4o_A 19 LAPAKIIT---SFPVNTFLENLASAPDGTIFVTNHE-----VGEIVSITPDGNQ-QIHAT------------VEG-KVSG 76 (306)
T ss_dssp CCCEEEEE---EECTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTTCCE-EEEEE------------CSS-EEEE
T ss_pred CCCceEeE---eCCCCCCcceEEECCCCCEEEEeCC-----CCeEEEECCCCce-EEEEe------------CCC-Ccee
Confidence 34455554 34544455555543 4668887521 2568999988742 22211 111 2234
Q ss_pred EEEE-CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEE
Q 009910 152 LISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMF 229 (522)
Q Consensus 152 ~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~y 229 (522)
++.. ++++|+...... ...+++||+.+++.+.+.. .+..+.....+.. ++.+|+.-- ....+|++
T Consensus 77 ia~~~dG~l~vad~~~~----~~~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~ 143 (306)
T 2p4o_A 77 LAFTSNGDLVATGWNAD----SIPVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS------YRGAIWLI 143 (306)
T ss_dssp EEECTTSCEEEEEECTT----SCEEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET------TTTEEEEE
T ss_pred EEEcCCCcEEEEeccCC----cceEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC------CCCeEEEE
Confidence 4443 567888643211 1248899999988877664 3444544444433 456777521 23579999
Q ss_pred EcCCCcEEE--eecCC--CCCC-CCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-CcE---EEeeeCCCCCCCc
Q 009910 230 DLKSLTWLP--LHCTG--TGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIW---TRIKIRGFHPSPR 300 (522)
Q Consensus 230 d~~t~~W~~--~~~~g--~~p~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W---~~~~~~~~~p~~r 300 (522)
|+.+.+-.. ..... ..+. ..........+++.+|+.-- ..+.|++|++.. ... +.+... ..|
T Consensus 144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~-----~~~~I~~~~~~~~g~~~~~~~~~~~---~~P- 214 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT-----EKMLLLRIPVDSTDKPGEPEIFVEQ---TNI- 214 (306)
T ss_dssp ETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET-----TTTEEEEEEBCTTSCBCCCEEEEES---CCC-
T ss_pred eCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC-----CCCEEEEEEeCCCCCCCccEEEecc---CCC-
Confidence 987642111 11000 0111 11111222445555887532 235799999864 221 111111 111
Q ss_pred cceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEee--CCccEEEEEcC
Q 009910 301 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQH--KEKDFLVAFGG 372 (522)
Q Consensus 301 ~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~--~~~~~l~v~GG 372 (522)
..+++- +++||+.-... +.|.+||+. .+...+...+. +......+++.. .+.+.|||.-.
T Consensus 215 --~gi~vd~dG~l~va~~~~-----~~V~~~~~~-G~~~~~~~~~~----~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 215 --DDFAFDVEGNLYGATHIY-----NSVVRIAPD-RSTTIIAQAEQ----GVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp --SSEEEBTTCCEEEECBTT-----CCEEEECTT-CCEEEEECGGG----TCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred --CCeEECCCCCEEEEeCCC-----CeEEEECCC-CCEEEEeeccc----ccCCceEEEEecccCCCCEEEEECC
Confidence 123332 67888875432 459999986 44443322111 112234455542 34456777544
No 242
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.50 E-value=70 Score=34.78 Aligned_cols=269 Identities=10% Similarity=0.106 Sum_probs=129.3
Q ss_pred CCceEEeeecCCCCCCccceEEEEE---CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccc
Q 009910 73 SENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (522)
Q Consensus 73 ~~~W~~l~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~ 149 (522)
..+|+.+. . .....-.++++. .+.+|+. +.. ..+++-+-...+|+.+...... .......-
T Consensus 3 ~~~W~~~~---~-~~~g~i~~i~~~p~~~~~~~a~-~~~-----ggv~rS~DgG~tW~~~~~~~~~------~~~~~~~i 66 (789)
T 1sqj_A 3 HYEFKNVA---I-GGGGYITGIVAHPKTKDLLYAR-TDI-----GGAYRWDAGTSKWIPLNDFIEA------QDMNIMGT 66 (789)
T ss_dssp -CEEEECC---C-CBCSCEEEEEECSSSTTCEEEE-ESS-----SCEEEEETTTTEEEESCTTCCG------GGGGGCSE
T ss_pred cccceEcc---C-CCCCcEEEEEECCCCCCEEEEE-ecC-----CCEEEecCCCCCeeECccCCCc------ccccCCce
Confidence 45798885 2 222222333332 1446553 322 3577777778899997641100 00011223
Q ss_pred eEEEEEC---CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCC---CCC-cceEEEEE---CCEEEEEcccCCC
Q 009910 150 HSLISWG---KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP---VAR-SGHTVVRA---SSVLILFGGEDGK 219 (522)
Q Consensus 150 ~~~~~~~---~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p---~~r-~~~~~~~~---~~~iyv~GG~~~~ 219 (522)
++++... +.+|+..|..... ....+++=+-.-.+|+.+......+ ..| ..+.+++. .+.+|+ |...
T Consensus 67 ~~ia~dp~~~~~i~~~~g~~~~~-~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~-g~~~-- 142 (789)
T 1sqj_A 67 ESIALDPNNPDRLYLAQGRYVGD-EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM-GTRT-- 142 (789)
T ss_dssp EEEEEETTEEEEEEEEECSCTTS-SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-ECSS--
T ss_pred eEEEECCCCCCEEEEEeCccCCC-cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-Eecc--
Confidence 4444432 5688876642111 1134665555567899986421111 122 22345443 246666 3321
Q ss_pred CCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCC
Q 009910 220 RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH 296 (522)
Q Consensus 220 ~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 296 (522)
..+++=+-.-.+|+++.....+...-.......+ +...+|+..... ..+++=.-...+|+.+...
T Consensus 143 ----~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-----~~v~~S~DgG~TW~~~~~~--- 210 (789)
T 1sqj_A 143 ----EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP-----QGMYVTHDGGVSWEPVAGQ--- 210 (789)
T ss_dssp ----SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST-----TCEEEESSTTSSCEECTTC---
T ss_pred ----CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC-----CeEEEEcCCCcCcccCCCC---
Confidence 2355433344789998621111011122233333 233466654321 2355444446789998632
Q ss_pred CCCc----------------cceEEEEE--CCEEEEEcccCCC---CCcCeEEEEECCCCceEEeccCCCC-CCCC----
Q 009910 297 PSPR----------------AGCCGVLC--GTKWYIAGGGSRK---KRHAETLIFDILKGEWSVAITSPSS-SVTS---- 350 (522)
Q Consensus 297 p~~r----------------~~~~~~~~--~~~iyi~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~-~~~~---- 350 (522)
|... ..+.+++. .+.||+..+.... .....+++.+-...+|+.+...+.. .+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~ 290 (789)
T 1sqj_A 211 PSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQ 290 (789)
T ss_dssp CCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSC
T ss_pred cCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcCCCCcccccccccc
Confidence 2211 11444333 7889987432111 1235689999889999998753321 0100
Q ss_pred CC---CcEEEEEeeCCccEEEEEcCC
Q 009910 351 NK---GFTLVLVQHKEKDFLVAFGGI 373 (522)
Q Consensus 351 r~---~~~~~~~~~~~~~~l~v~GG~ 373 (522)
.. ++..+++...+.+.||+.+..
T Consensus 291 ~~~~~g~~~lav~p~~~~~v~~~~~~ 316 (789)
T 1sqj_A 291 TFPAGGFCGLSVDATNPNRLVVITLD 316 (789)
T ss_dssp CSCCCEEEEEEEETTEEEEEEEEEEC
T ss_pred ccccCceEEEEECCCCCCEEEEEEec
Confidence 12 344555543334568877653
No 243
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=80.05 E-value=20 Score=31.63 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=78.3
Q ss_pred EEEEECCEEEEEcccCCCCCCceeEEEEECCCCc--E-EEeeec-CCCCCCCcceEEEEECCEEEEEcccCCCCCccCcE
Q 009910 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--W-SVVEAK-GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (522)
Q Consensus 151 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W-~~~~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 226 (522)
+++..++++|+|-|.. +|+++..... . ..+... ..+|. ....+....++++|+|-| +..
T Consensus 10 A~~~~~g~~~fFkg~~--------~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKERW--------FWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DKH 72 (196)
T ss_dssp EEEEETTEEEEEETTE--------EEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TEE
T ss_pred EEEEcCCEEEEEECCE--------EEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CEE
Confidence 4456789999997742 8888643200 0 111110 13554 333332234688999965 447
Q ss_pred EEEEcCCCcE---EEeecCC-CCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE-----eeeCCCCC
Q 009910 227 HMFDLKSLTW---LPLHCTG-TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKIRGFHP 297 (522)
Q Consensus 227 ~~yd~~t~~W---~~~~~~g-~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~~~~~p 297 (522)
|+|+..+... ..+...+ .+|......+.....++.+|+|-| +..|+||..+++-.. +..-+..|
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gip 145 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGIP 145 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTCC
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCcC
Confidence 8887532110 1222111 244333333222223445898876 368999987643211 11000112
Q ss_pred CCccceEEEEE-CC-EEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 298 SPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 298 ~~r~~~~~~~~-~~-~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
..-.+|... ++ ++|++-| +..|+||..+.+
T Consensus 146 --~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 146 --ESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp --SSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred --CCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 222344444 44 8999977 458999987754
No 244
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=79.75 E-value=17 Score=38.72 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=56.9
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCC---CccCcEEEEEcCCCcEEEeecCCCCCCCCc
Q 009910 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 250 (522)
.++.+|+.+++-..+..............+..-+++.++++..+... .....++++|+.+.+-..+... .....+.
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~ 116 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-EVSNAKL 116 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT-TCCSCCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC-ccccccc
Confidence 58899998887555442111100011212222356666666543221 1246799999998876555421 1111111
Q ss_pred ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeee
Q 009910 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 292 (522)
...+..-+++ .++++.. ++++++|..++.-.++..
T Consensus 117 ~~~~~SPdG~-~la~~~~------~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 117 QYAGWGPKGQ-QLIFIFE------NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp SBCCBCSSTT-CEEEEET------TEEEEESSSSSCCEEEEC
T ss_pred cccEECCCCC-EEEEEEC------CeEEEEECCCCceEEEec
Confidence 1122223455 3444432 379999998877766654
No 245
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=79.36 E-value=48 Score=35.55 Aligned_cols=154 Identities=11% Similarity=-0.040 Sum_probs=81.1
Q ss_pred ECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcC
Q 009910 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (522)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~ 232 (522)
.++.||+.-. ....|+++++....-..+... .+..++ .+++ .++.||+.-- .....|+++++.
T Consensus 463 ~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~td~-----~~~~~I~~~~~d 527 (699)
T 1n7d_A 463 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWTDW-----GTPAKIKKGGLN 527 (699)
T ss_dssp SSSBCEECCT------TTSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEECCC-----SSSCCEEBCCSS
T ss_pred eCCcEEEEec------cCCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEccc-----CCCCeEEEEeCC
Confidence 3678888632 123588999887654444321 122222 2333 3577887531 112568888876
Q ss_pred CCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCE
Q 009910 233 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (522)
Q Consensus 233 t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 311 (522)
...-+.+.. ..+..|. ++++- .++.||+.-.. .+.|+++|+....-+.+.... .......++++.++.
T Consensus 528 G~~~~~l~~-~~l~~Pn---Glavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~--~~~~~P~glavd~~~ 596 (699)
T 1n7d_A 528 GVDIYSLVT-ENIQWPN---GITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDE--KRLAHPFSLAVFEDK 596 (699)
T ss_dssp SCCCCEESC-SSCSSCC---CEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCS--SSCSSCCCCEEETTE
T ss_pred CCCeeEEEe-CCCCCcc---EEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecC--CcCCCceEeEEECCE
Confidence 543333321 1222221 23332 33448886432 357999998765444443211 111223355567889
Q ss_pred EEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 312 WYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 312 iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
||+.-... ..|.++|+.+.+-..
T Consensus 597 lywtd~~~-----~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 597 VFWTDIIN-----EAIFSANRLTGSDVN 619 (699)
T ss_dssp EEEECSTT-----TCEEEEETTTEEEEE
T ss_pred EEEEeCCC-----CeEEEEEccCCCceE
Confidence 99986432 459999987655433
No 246
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=78.99 E-value=55 Score=33.67 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=71.8
Q ss_pred ceeEEEEEC--CCCcEEEeeecCCCCCCCcceEEEEEC-CEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 009910 172 RVSVWTFDT--ETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (522)
Q Consensus 172 ~~~v~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 248 (522)
...+|..++ ....- .+.. .+..+ ..+...+ +.+++..+... .+.+||+++.+-..+. ..+.
T Consensus 89 ~~~l~~~~~~~~g~~~-~l~~---~~~~~--~~~~s~dg~~~~~~s~~~~------~~~l~d~~~g~~~~l~---~~~~- 152 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ-RLEA---VKPMR--ILSGVDTGEAVVFTGATED------RVALYALDGGGLRELA---RLPG- 152 (582)
T ss_dssp CEEEEEEETTSTTCCE-ECTT---SCSBE--EEEEEECSSCEEEEEECSS------CEEEEEEETTEEEEEE---EESS-
T ss_pred ceEEEEEeccCCCccc-cccC---CCCce--eeeeCCCCCeEEEEecCCC------CceEEEccCCcEEEee---cCCC-
Confidence 456888888 44332 3321 22122 2233333 45555544332 2447799888777765 2222
Q ss_pred CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeE
Q 009910 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET 327 (522)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v 327 (522)
...+..-+++ .+++++.+.. ....++++|++++.++.+... +. .....+.. +++.++.+..++ ...+
T Consensus 153 --~~~~~spDG~-~la~~~~~~~-~~~~i~~~d~~~g~~~~l~~~---~~--~~~~~~~SpDG~~l~~~~~~~---~~~i 220 (582)
T 3o4h_A 153 --FGFVSDIRGD-LIAGLGFFGG-GRVSLFTSNLSSGGLRVFDSG---EG--SFSSASISPGMKVTAGLETAR---EARL 220 (582)
T ss_dssp --CEEEEEEETT-EEEEEEEEET-TEEEEEEEETTTCCCEEECCS---SC--EEEEEEECTTSCEEEEEECSS---CEEE
T ss_pred --ceEEECCCCC-EEEEEEEcCC-CCeEEEEEcCCCCCceEeecC---CC--ccccceECCCCCEEEEccCCC---eeEE
Confidence 2223334666 4554443211 123599999999988877432 11 11222222 555444433222 2468
Q ss_pred EEEECCCCceE
Q 009910 328 LIFDILKGEWS 338 (522)
Q Consensus 328 ~~yd~~~~~W~ 338 (522)
+++|+++.+.+
T Consensus 221 ~~~d~~~~~~~ 231 (582)
T 3o4h_A 221 VTVDPRDGSVE 231 (582)
T ss_dssp EEECTTTCCEE
T ss_pred EEEcCCCCcEE
Confidence 99999888776
No 247
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=78.63 E-value=45 Score=31.48 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
++.+++.|+.+. .+.++|+.+.+....-. . ....-.+++.. ++. .++.||.++ .+..||+...
T Consensus 87 ~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~--~--h~~~v~~v~~sp~~~-~l~s~~~d~-----~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWDK------TLRLWDLRTGTTYKRFV--G--HQSEVYSVAFSPDNR-QILSAGAER-----EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETTS------EEEEEETTSSCEEEEEE--C--CCSCEEEEEECSSTT-EEEEEETTS-----CEEEEESSSC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCcEEEEEc--C--CCCcEEEEEECCCCC-EEEEEcCCC-----EEEEEeccCC
Confidence 456666776543 48889998765433210 1 11112233333 344 566676543 4888888643
No 248
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=78.09 E-value=42 Score=30.76 Aligned_cols=232 Identities=12% Similarity=0.075 Sum_probs=105.8
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 177 (522)
+++.++.|+.+ ..+.++|..+.+-...... . . .........+.+++.|+... .+..
T Consensus 78 ~~~~l~sgs~D-----g~v~iw~~~~~~~~~~~~~----------h--~-~~~~~~~~~~~~l~s~~~~~------~~~~ 133 (318)
T 4ggc_A 78 EGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTS----------H--S-ARVGSLSWNSYILSSGSRSG------HIHH 133 (318)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC----------C--S-SCEEEEEEETTEEEEEETTS------EEEE
T ss_pred CCCEEEEEECC-----CcEEEeecCCceeEEEecC----------c--c-ceEEEeecCCCEEEEEecCC------ceEe
Confidence 45677777754 4678899888754332220 1 1 11223334455566665432 3555
Q ss_pred EECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcE--EEeecCCCCCCCCcceEEE
Q 009910 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW--LPLHCTGTGPSPRSNHVAA 255 (522)
Q Consensus 178 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~g~~p~~r~~~~~~ 255 (522)
++..+......... ..............+..++.|+.++ .+.+||..+.+- ...........+ -.+.+
T Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~~~ 203 (318)
T 4ggc_A 134 HDVRVAEHHVATLS--GHSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVA 203 (318)
T ss_dssp EETTSSSCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCBTTBSCCSEEECCCCSC--EEEEE
T ss_pred eecCCCceeEEEEc--CccCceEEEEEcCCCCEEEEEecCc------ceeEEECCCCcccccceeeecccCCc--eEEEE
Confidence 66555543322211 1111111112223456666666543 377888876431 111100011111 11122
Q ss_pred EE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEE
Q 009910 256 LY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (522)
Q Consensus 256 ~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd 331 (522)
.. +...+++.+|.. ...+..+|.....-...... ... ....+.. ++.+++.+|... ..+.+||
T Consensus 204 ~~~~~~~~~~~~~~~~----~~~i~lwd~~~~~~~~~~~~---~~~--v~~~~~~~~~~~~~~~sg~~d----~~i~iwd 270 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTS----DRHIRIWNVCSGACLSAVDA---HSQ--VCSILWSPHYKELISGHGFAQ----NQLVIWK 270 (318)
T ss_dssp ECTTSTTEEEEEECTT----TCEEEEEETTTCCEEEEEEC---SSC--EEEEEEETTTTEEEEEECTTT----CCEEEEE
T ss_pred ecCCCCcEEEEEecCC----CCEEEEEecccccccccccc---eee--eeeeeecccccceEEEEEcCC----CEEEEEE
Confidence 22 334344444432 23577888877665444332 111 1122222 456666555432 3489999
Q ss_pred CCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 332 ~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
..+.+-. ...... ......+.+..++ .+++.||.++ .|-++|+..
T Consensus 271 ~~~~~~~--~~l~gH----~~~V~~l~~spdg--~~l~S~s~D~----~v~iWd~~~ 315 (318)
T 4ggc_A 271 YPTMAKV--AELKGH----TSRVLSLTMSPDG--ATVASAAADE----TLRLWRCFE 315 (318)
T ss_dssp TTTCCEE--EEECCC----SSCEEEEEECTTS--SCEEEEETTT----EEEEECCSC
T ss_pred CCCCcEE--EEEcCC----CCCEEEEEEcCCC--CEEEEEecCC----eEEEEECCC
Confidence 8876533 222211 1122333443333 3667777654 466776643
No 249
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=77.89 E-value=56 Score=32.18 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=105.5
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccce-EEEEECCEEEEEcccCCCCCCceeEE
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH-SLISWGKKVLLVGGKTDSGSDRVSVW 176 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~v~ 176 (522)
++.||+.... .+.+.++|+.+..-..+... . ...+ +....++.||+...... ..++
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~-----------~--~~~~ia~~~~g~~l~~~d~~~~-----~~I~ 197 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPG-----------F--KGGKPAVTKDKQRVYSIGWEGT-----HTVY 197 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEET-----------C--CBCBCEECTTSSEEEEEBSSTT-----CEEE
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeecc-----------C--CCCceeEecCCCcEEEEecCCC-----ceEE
Confidence 4779988642 25789999998766655431 0 0112 11112456776643211 1599
Q ss_pred EEECCCCc-EEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcc-e
Q 009910 177 TFDTETEC-WSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN-H 252 (522)
Q Consensus 177 ~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~-~ 252 (522)
++|+.+.. ...+.... .+....-+.+++. ++.||+.-. ...+++||+.+.....+...+........ .
T Consensus 198 ~~d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 198 VYMKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp EEEGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred EEEcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence 99987654 23331100 1012222344443 578998321 24699999998876555221111111222 1
Q ss_pred -EEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCC--------Ccc--ceEEEEE-CCEEEEEcc-c
Q 009910 253 -VAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--------PRA--GCCGVLC-GTKWYIAGG-G 318 (522)
Q Consensus 253 -~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~--------~r~--~~~~~~~-~~~iyi~GG-~ 318 (522)
..+... +..||+.... .+.|++|++... ...+...+..+. .+. -.++++. ++.||+... .
T Consensus 270 ~~ia~~p~~g~lyv~d~~-----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~ 343 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQN-----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK 343 (409)
T ss_dssp CEEEEETTTTEEEEEETT-----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred ccEEEeCCCCEEEEEeCC-----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence 455554 4568886432 356999998765 333322210000 011 1223332 567998854 3
Q ss_pred CCCCCcCeEEEEECCCCceEEecc
Q 009910 319 SRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 319 ~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
. ..|.++|+.+.+.+.+..
T Consensus 344 ~-----~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 344 G-----YCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp T-----CEEEEEETTTTEEEEEEE
T ss_pred C-----CEEEEEECCCCEEEEEeC
Confidence 2 458999976776665543
No 250
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=77.81 E-value=31 Score=31.16 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=57.1
Q ss_pred ECCEEEEEcccCCCCCCceeEEEEECCCC----cEEEeee--c---CCCCCC----CcceEEEE--ECCEEEEEcccCCC
Q 009910 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVVEA--K---GDIPVA----RSGHTVVR--ASSVLILFGGEDGK 219 (522)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~--~---~~~p~~----r~~~~~~~--~~~~iyv~GG~~~~ 219 (522)
.++++|+|=|. .+|+||..++ ....-+. . ..+|.. ... ++.. .++++|+|-|
T Consensus 69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~ID-AA~~~~~~gk~yfFkG---- 135 (225)
T 3oyo_A 69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSID-SAFRSTKGKEVYLFKG---- 135 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCC-EEEECSSTTEEEEEET----
T ss_pred CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccc-eEEEECCCCcEEEEeC----
Confidence 58999999774 3999986432 2221110 0 123331 233 2323 3689999965
Q ss_pred CCccCcEEEEEcCCCcEEEe--ecCCCCCC------CCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcC
Q 009910 220 RRKLNDLHMFDLKSLTWLPL--HCTGTGPS------PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE 283 (522)
Q Consensus 220 ~~~~~~v~~yd~~t~~W~~~--~~~g~~p~------~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~ 283 (522)
+..|+||..+++...- ......|. +..--+|... .+..+|+|-|. ..|+||..
T Consensus 136 ----~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~-------~ywr~d~~ 197 (225)
T 3oyo_A 136 ----NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ-------NYVRIDFT 197 (225)
T ss_dssp ----TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT-------EEEEEECC
T ss_pred ----CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC-------EEEEEeCC
Confidence 4579999776654431 00001221 2222234443 34458999763 68999987
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=75.76 E-value=53 Score=30.77 Aligned_cols=208 Identities=11% Similarity=-0.004 Sum_probs=102.8
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCC------
Q 009910 150 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGK------ 219 (522)
Q Consensus 150 ~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~------ 219 (522)
++++.. ++.|||.-.. ..+.+||+.++..+.+.....-.....-..+++. ++.||+.-.....
T Consensus 83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 445555 5789987322 1388999887766555421000011122334443 5788886321100
Q ss_pred -----CCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCC---CcEEEe
Q 009910 220 -----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFET---MIWTRI 290 (522)
Q Consensus 220 -----~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~---~~W~~~ 290 (522)
......+++||+.+.+...+......| ...+... ++.+||.-.. .+.|++|++.. ...+.+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-----~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLKELHVP-----GGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-----CEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEeccCCccC-----cceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceE
Confidence 012356999999887765543111122 2233433 3457776321 24699999875 344444
Q ss_pred eeCCCCCCCccceEEEEE-CCEEEEEcccCCC-----CCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCc
Q 009910 291 KIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK-----KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 364 (522)
Q Consensus 291 ~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~-----~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~ 364 (522)
... +. -..+++- ++.|||....... .....+.+||+....-..+.. +.. ......+.++.. .
T Consensus 226 ~~~---~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g--~~~~~~~~~~~~---~ 293 (322)
T 2fp8_A 226 VKI---PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPP--FAGEHFEQIQEH---D 293 (322)
T ss_dssp EEC---SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTT--TTTSCCCEEEEE---T
T ss_pred EeC---CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCC--CccccceEEEEe---C
Confidence 332 21 1223332 5678887543111 012458999997655544443 211 101122233332 3
Q ss_pred cEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 365 DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 365 ~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
+.|||.... .+.|.+|++..+.
T Consensus 294 g~L~v~~~~----~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 294 GLLYIGTLF----HGSVGILVYDKKG 315 (322)
T ss_dssp TEEEEECSS----CSEEEEEEC----
T ss_pred CEEEEeecC----CCceEEEeccccc
Confidence 568866433 3468888876553
No 252
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=75.41 E-value=45 Score=29.86 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=77.5
Q ss_pred EEEEECCEEEEEcCcCCCCCcccEEEEEcCCC-cEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCCC
Q 009910 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF-SWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGS 170 (522)
Q Consensus 93 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~ 170 (522)
+++.+++++|+|=| +.+|+++.... ........ ..-+ .+|....++... .++++|+|=|.
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~-~~wp-----~lp~~IDAA~~~~~~~k~yfFkG~----- 96 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVA-TFWP-----ELPEKIDAVYEAPQEEKAVFFAGN----- 96 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGG-GTCT-----TSCSCCSEEEEETTTTEEEEEETT-----
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHH-HhcC-----CCCCCccEEEEECCCCEEEEEeCC-----
Confidence 44557899999977 45677665442 12211110 0001 122323333332 26899999663
Q ss_pred CceeEEEEECCCCc--E-EEeeecCCCCCC--CcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEE-----
Q 009910 171 DRVSVWTFDTETEC--W-SVVEAKGDIPVA--RSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP----- 238 (522)
Q Consensus 171 ~~~~v~~yd~~t~~--W-~~~~~~~~~p~~--r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~----- 238 (522)
.+|+||..+.. + +.+..- .+|.. ... ++.. .++++|+|-| +..|+||..+++-..
T Consensus 97 ---~yW~y~~~~~~~gyPk~I~~~-g~p~~~~~ID-AAf~~~~~g~~YfFkG--------~~ywr~d~~~~~v~~gyPr~ 163 (218)
T 1gen_A 97 ---EYWIYSASTLERGYPKPLTSL-GLPPDVQRVD-AAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPKL 163 (218)
T ss_dssp ---EEEEEETTEECTTCSEEGGGG-TCCTTCCCCS-EEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCEE
T ss_pred ---EEEEEcCccccCCCCccHhhc-CCCCCcCCcc-EEEEEcCCCeEEEEEC--------CEEEEEECccccccCCCCcc
Confidence 38999853100 0 011110 13321 233 3333 3589999965 458999987663221
Q ss_pred ee-cCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 239 LH-CTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 239 ~~-~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
+. .-..+|. .-.+|.... +..+|+|-|. ..|+||..+..
T Consensus 164 i~~~w~g~p~--~idaAf~~~~~g~~YfFkg~-------~y~~~~~~~~~ 204 (218)
T 1gen_A 164 IADAWNAIPD--NLDAVVDLQGGGHSYFFKGA-------YYLKLENQSLK 204 (218)
T ss_dssp HHHHSSSCCS--SCSEEEECTTTCEEEEEETT-------EEEEEETTEEE
T ss_pred hhhccCCCCC--CCCEEEEEcCCCcEEEEECC-------EEEEEECCcee
Confidence 10 0012222 223444444 3458998663 68899876543
No 253
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=75.21 E-value=82 Score=32.70 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=53.1
Q ss_pred EEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCC-CceE
Q 009910 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK-GEWS 338 (522)
Q Consensus 262 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~-~~W~ 338 (522)
+++.|+.+ +.+..||..+.....+...+ ... ...++.+ ++++++.|+.+.. +..||..+ .+
T Consensus 462 ~lasgs~D-----~~v~lwd~~~~~~~~~~~~~---h~~-~v~~v~fspdg~~las~s~d~~-----v~~w~~~~~~~-- 525 (611)
T 1nr0_A 462 FVAVGGQD-----SKVHVYKLSGASVSEVKTIV---HPA-EITSVAFSNNGAFLVATDQSRK-----VIPYSVANNFE-- 525 (611)
T ss_dssp EEEEEETT-----SEEEEEEEETTEEEEEEEEE---CSS-CEEEEEECTTSSEEEEEETTSC-----EEEEEGGGTTE--
T ss_pred EEEEeCCC-----CeEEEEEccCCceeeeeccC---CCC-ceEEEEECCCCCEEEEEcCCCC-----EEEEEcCCCCc--
Confidence 55555543 25788887776654433211 111 1122222 6677777776544 88888765 32
Q ss_pred EeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 339 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 339 ~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+.. . ....-......+.+..++ .+++.|+.++ .|.++++++.+
T Consensus 526 ~~~~-~-~~~~H~~~V~~v~fspdg--~~lasgs~D~----~v~lW~~~~~~ 569 (611)
T 1nr0_A 526 LAHT-N-SWTFHTAKVACVSWSPDN--VRLATGSLDN----SVIVWNMNKPS 569 (611)
T ss_dssp ESCC-C-CCCCCSSCEEEEEECTTS--SEEEEEETTS----CEEEEETTCTT
T ss_pred eeee-e-eeeecccceeEEEECCCC--CEEEEEECCC----cEEEEECCCcc
Confidence 2111 0 000011223344444333 3677777654 58888886543
No 254
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=75.08 E-value=66 Score=31.55 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=53.6
Q ss_pred EEEEcCCCCCCCCCcEEEEEcCCC---cEEE--eeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 262 LLIFGGSSKSKTLNDLYSLDFETM---IWTR--IKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 262 lyv~GG~~~~~~~~~v~~yd~~~~---~W~~--~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
+++.|+.++ .+.+||+.+. .+.. .... ......-.+++.. ++.+++.|+.++ .|.+||+.+
T Consensus 196 ~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~l~s~~~dg-----~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH-----TICLWDINATPKEHRVIDAKNIF--TGHTAVVEDVAWHLLHESLFGSVADDQ-----KLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS-----CEEEEETTSCCBGGGEEECSEEE--CCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTC
T ss_pred eEEEEeCCC-----eEEEEeCCCCCCCCceeccceee--cCCCCCEeeeEEeCCCCCEEEEEeCCC-----eEEEEECCC
Confidence 667776543 4889998762 2221 1111 0111112223332 466777777654 489999876
Q ss_pred Cc-eEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccC
Q 009910 335 GE-WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 335 ~~-W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~ 389 (522)
.. ...+.... ........+.+... ...+++.|+.++ .|.+||+...
T Consensus 264 ~~~~~~~~~~~----~~~~~v~~i~~~p~-~~~~l~tg~~dg----~v~vwd~~~~ 310 (430)
T 2xyi_A 264 NNTSKPSHTVD----AHTAEVNCLSFNPY-SEFILATGSADK----TVALWDLRNL 310 (430)
T ss_dssp SCSSSCSEEEE----CCSSCEEEEEECSS-CTTEEEEEETTS----EEEEEETTCT
T ss_pred CCCCcceeEee----cCCCCeEEEEeCCC-CCCEEEEEeCCC----eEEEEeCCCC
Confidence 52 11111100 11122334444332 234777887654 5888888763
No 255
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=74.40 E-value=57 Score=30.51 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=95.3
Q ss_pred cccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecC
Q 009910 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (522)
Q Consensus 113 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 192 (522)
...++++|+.+.+-..+.. .......-+++.+++..... +.....+|.+|+.+++...+..
T Consensus 42 ~~~l~~~d~~~~~~~~l~~----------------~~~~~~SpDg~~la~~~~~~-~~~~~~l~~~~~~~g~~~~l~~-- 102 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIEN----------------ATMPRISPDGKKIAFMRANE-EKKVSEIWVADLETLSSKKILE-- 102 (347)
T ss_dssp EEEEEEEETTTCCEEEEES----------------CEEEEECTTSSEEEEEEEET-TTTEEEEEEEETTTTEEEEEEE--
T ss_pred cceEEEEeCCCCceEEccc----------------CCCeEECCCCCEEEEEEecc-CCCcceEEEEECCCCceEEEEc--
Confidence 5678999998876554411 01111111343333332211 1134569999999988777653
Q ss_pred CCCCCCcceEEEEE-CCEEEEEcccCC----------------CC-----CccCcEEEEEcCCCcE-EEeecCCCCCCCC
Q 009910 193 DIPVARSGHTVVRA-SSVLILFGGEDG----------------KR-----RKLNDLHMFDLKSLTW-LPLHCTGTGPSPR 249 (522)
Q Consensus 193 ~~p~~r~~~~~~~~-~~~iyv~GG~~~----------------~~-----~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r 249 (522)
.+. ....+.. +++.+++..... .+ .....++++|+.+.+. ..+. . +
T Consensus 103 -~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~---~-~--- 171 (347)
T 2gop_A 103 -AKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE---K-P--- 171 (347)
T ss_dssp -ESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE---E-E---
T ss_pred -CCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec---C-C---
Confidence 221 2222222 454444443210 00 1135699999998887 6665 2 2
Q ss_pred cceEEEEECCcEEEEEcCCCCCC---C-CCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCE-EEEEcccCC--CC
Q 009910 250 SNHVAALYDDKNLLIFGGSSKSK---T-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK-WYIAGGGSR--KK 322 (522)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG~~~~~---~-~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~-iyi~GG~~~--~~ 322 (522)
.....+...+. +++.+...... . ..++|.+| ++.++.+... .......-+++ |++.+.... ..
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~~~~~~~~ 241 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGKPEKKYMS 241 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEECCSSSCCC
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEccccCCcc
Confidence 23344455666 55555333211 2 45789998 6777766431 11122233554 444442221 12
Q ss_pred CcCeEEEEECCCCceEEec
Q 009910 323 RHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 323 ~~~~v~~yd~~~~~W~~~~ 341 (522)
....++.+| +.++..+.
T Consensus 242 ~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 242 EHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp SSCEEEEEC--SSCEEESS
T ss_pred ccceEEEEC--CCceEecc
Confidence 346799999 66666654
No 256
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=73.81 E-value=0.52 Score=46.65 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=55.5
Q ss_pred EECCEEEEEcccCCCCCCceeEEEEECCCCc--EEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEc
Q 009910 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 154 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
+.++.||+.+. + ..++.+|..+++ |+.-. +. ...+.+..++.+|+.|+.+ ..++.+|.
T Consensus 7 v~~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~--~~-----~~s~p~~~~g~~~v~~s~d------g~l~a~d~ 66 (369)
T 2hz6_A 7 LPETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE--DP-----VLQVPTHVEEPAFLPDPND------GSLYTLGS 66 (369)
T ss_dssp -CTTEEEEEET-T------SEEEEEETTTCCEEEEEEC--CC-----SCCCC-----CCEEECTTT------CCEEEC--
T ss_pred eeCCEEEEEcC-C------CEEEEEECCCCCEEEEecC--CC-----ceecceEcCCCEEEEeCCC------CEEEEEEC
Confidence 34667776432 2 259999998875 76532 11 1122234567788876433 34889998
Q ss_pred CCC--cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC--cEEEeeeCCCCCCCccceEEEE
Q 009910 232 KSL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVL 307 (522)
Q Consensus 232 ~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r~~~~~~~ 307 (522)
++. .|..-. ..+... ..+.+...+..+| +|+.+ ..++.+|++++ .|+.-... . . ..+.
T Consensus 67 ~tG~~~w~~~~---~~~~~~-~~sp~~~~~~~v~-~g~~d-----g~v~a~D~~tG~~~w~~~~~~---~-~----~~~p 128 (369)
T 2hz6_A 67 KNNEGLTKLPF---TIPELV-QASPCRSSDGILY-MGKKQ-----DIWYVIDLLTGEKQQTLSSAF---A-D----SLSP 128 (369)
T ss_dssp ---CCSEECSC---CHHHHH-TTCSCC-----CC-CCEEE-----EEEEEECCC--------------------------
T ss_pred CCCceeeeeec---cCcccc-ccCceEecCCEEE-EEeCC-----CEEEEEECCCCcEEEEecCCC---c-c----cccc
Confidence 654 465321 111000 0111111233244 33321 35888888765 36533211 0 0 0111
Q ss_pred ECCEEEEEcccCCCCCcCeEEEEECCCCc--eEE
Q 009910 308 CGTKWYIAGGGSRKKRHAETLIFDILKGE--WSV 339 (522)
Q Consensus 308 ~~~~iyi~GG~~~~~~~~~v~~yd~~~~~--W~~ 339 (522)
.++.+|+ |+.+ ..++.+|+.+.+ |+.
T Consensus 129 ~~~~v~~-~~~d-----g~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 129 STSLLYL-GRTE-----YTITMYDTKTRELRWNA 156 (369)
T ss_dssp ----EEE-EEEE-----EEEECCCSSSSSCCCEE
T ss_pred cCCEEEE-EecC-----CEEEEEECCCCCEEEeE
Confidence 3445554 4332 348888887654 775
No 257
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=73.27 E-value=35 Score=36.58 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=107.4
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCC----cEEE
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSV 187 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~ 187 (522)
+.+.++++.+.....+... . ..-++++.. ++.||+.--. ...|+++++.+. .-..
T Consensus 386 ~~I~~id~~~~~~~~~~~~-----------~--~~p~gla~d~~~~~Ly~sD~~------~~~I~~~~~~g~~~~~~~~~ 446 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN-----------L--RNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDT 446 (699)
T ss_dssp TC-CEECTTSCCEECCSCC-----------C--TTCCCCEEETTTTEEEECCTT------TTSBEEEESCCCCC-CCCCC
T ss_pred cceEEEeCCCCcceeeecc-----------C--cceEEEccccccCeEEEEecC------CCeEEEEecCCCCCCcceEE
Confidence 3567777777665544321 1 112333333 5788886321 234888888751 1111
Q ss_pred eeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEE
Q 009910 188 VEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 264 (522)
Q Consensus 188 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv 264 (522)
+.. ..+.. -..+++ .++.||+.- ...+.|+++++....-+.+... .+..|+ .+++- .++.||+
T Consensus 447 ~i~-~~~~~---P~glavD~~~g~LY~tD------~~~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~ 512 (699)
T 1n7d_A 447 VIS-RDIQA---PDGLAVDWIHSNIYWTD------SVLGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYW 512 (699)
T ss_dssp BCC-SCC-----CCCEECCCSSSBCEECC------TTTSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEE
T ss_pred EEe-CCCCC---cceEEEEeeCCcEEEEe------ccCCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEE
Confidence 110 01111 122333 467888852 1245689999887654444211 222232 22332 2333776
Q ss_pred EcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
.-- .....|+++++....-+.+... ....| .++++- +++||+.-.. ...|+++|+....-+.+..
T Consensus 513 td~----~~~~~I~~~~~dG~~~~~l~~~-~l~~P---nGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~ 579 (699)
T 1n7d_A 513 TDW----GTPAKIKKGGLNGVDIYSLVTE-NIQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILE 579 (699)
T ss_dssp CCC----SSSCCEEBCCSSSCCCCEESCS-SCSSC---CCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECC
T ss_pred ccc----CCCCeEEEEeCCCCCeeEEEeC-CCCCc---cEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEe
Confidence 431 1124688888765443333221 01111 123332 5789987643 2569999987655444442
Q ss_pred CCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 343 ~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+. .....+++++.. +.||+.-.. .+.|.++++.+.+
T Consensus 580 ~~~---~~~~P~glavd~----~~lywtd~~----~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 580 DEK---RLAHPFSLAVFE----DKVFWTDII----NEAIFSANRLTGS 616 (699)
T ss_dssp CSS---SCSSCCCCEEET----TEEEEECST----TTCEEEEETTTEE
T ss_pred cCC---cCCCceEeEEEC----CEEEEEeCC----CCeEEEEEccCCC
Confidence 211 112233444433 467776532 3468999876544
No 258
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=71.77 E-value=30 Score=31.15 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=54.3
Q ss_pred ECCEEEEEcCcCCCCCcccEEEEEcCCCcEE--EcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCcee
Q 009910 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWT--AASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (522)
Q Consensus 97 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 174 (522)
.++++|+|=| +.+|+++.....+. .+... -+ .+|....+ +...++++|+|=|. .
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~---wp-----gLP~~IDA-A~~~~~~~yfFkG~--------~ 82 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQ---WP-----QGPSTVDA-AFSWEDKLYLIQDT--------K 82 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGT---CT-----TSCSSCSE-EEEETTEEEEEETT--------E
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhh---cc-----CCCCCccE-EEEECCcEEEecCC--------E
Confidence 4688999976 45666665432211 11110 00 12232333 33458999999663 3
Q ss_pred EEEEECCCC-cE-----EEeeecCCCCCC----CcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 175 VWTFDTETE-CW-----SVVEAKGDIPVA----RSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 175 v~~yd~~t~-~W-----~~~~~~~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
+|+|+..++ +- +.+...-.+|.. +...+... .++++|+|-| +..|+||..+
T Consensus 83 yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~ 144 (219)
T 1hxn_A 83 VYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG--------RRLWWLDLKS 144 (219)
T ss_dssp EEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET--------TEEEEEEGGG
T ss_pred EEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC--------CEEEEEeCCC
Confidence 999987542 11 111100124433 23322222 2579999965 3479999754
No 259
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=71.73 E-value=98 Score=32.07 Aligned_cols=192 Identities=11% Similarity=0.042 Sum_probs=95.3
Q ss_pred EEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEE
Q 009910 159 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (522)
Q Consensus 159 iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 237 (522)
.++.|+.+. .+..||..+.+....-. .....-.+++. -++++++.||.+. .+.++|..+.+-.
T Consensus 162 ~l~s~s~D~------~v~lwd~~~~~~~~~l~----~H~~~V~~v~fspdg~~las~s~D~------~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 162 RIISGSDDN------TVAIFEGPPFKFKSTFG----EHTKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEEETTS------CEEEEETTTBEEEEEEC----CCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEE
T ss_pred EEEEEeCCC------eEEEEECCCCeEeeeec----cccCceEEEEECCCCCEEEEEECCC------cEEEEECCCCcEe
Confidence 466666542 37778876654332210 01111122222 2567888887654 3788898776644
Q ss_pred EeecCCCC---CCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEE
Q 009910 238 PLHCTGTG---PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYI 314 (522)
Q Consensus 238 ~~~~~g~~---p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi 314 (522)
..-..... .....-.+++...+...++.|+.++ .+.++|+.+......-..+ .........+..++..++
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-----~v~lWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKVEKTIPVG--TRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECC--SSGGGCEEEEEECSSCEE
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceeeeecCC--CCccceeEEEEEcCCEEE
Confidence 32100000 1111112233333333667776543 5889999887665443321 111112223334666666
Q ss_pred EcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 315 AGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 315 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.++.++. +..+|+.+..-.... .. -......+.+..++ ..++.|+.++ .|.++|+.+.+
T Consensus 299 s~s~d~~-----i~~~~~~~~~~~~~~--~g----h~~~v~~l~~spdg--~~l~s~s~D~----~v~~Wd~~~~~ 357 (611)
T 1nr0_A 299 SISANGF-----INFVNPELGSIDQVR--YG----HNKAITALSSSADG--KTLFSADAEG----HINSWDISTGI 357 (611)
T ss_dssp EEETTCC-----EEEEETTTTEEEEEE--CC----CSSCEEEEEECTTS--SEEEEEETTS----CEEEEETTTCC
T ss_pred EEeCCCc-----EEEEeCCCCCcceEE--cC----CCCCEEEEEEeCCC--CEEEEEeCCC----cEEEEECCCCc
Confidence 6665543 788888776533221 11 11122334443323 3566666543 57888877654
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=70.58 E-value=1.2e+02 Score=32.59 Aligned_cols=142 Identities=9% Similarity=0.009 Sum_probs=71.8
Q ss_pred eeEEEEECCCCcE--EEeeecCCCCCCCcceEEEE-ECC-EEEEEcccCCCCCccCcEEEEEcCCC--cE--EEeecCCC
Q 009910 173 VSVWTFDTETECW--SVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSL--TW--LPLHCTGT 244 (522)
Q Consensus 173 ~~v~~yd~~t~~W--~~~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~--~W--~~~~~~g~ 244 (522)
..+|+.++.+..= ..+-. .+...+...... -++ .|++..... ..++++++|+.+. .+ +.+.. .
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~---~~~~~~~~~~~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~--~ 317 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYE---EHNPLFSAFMYKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRP--R 317 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEE---CCCTTCEEEEEECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSC--C
T ss_pred CEEEEEECCCCchhcEEEEe---cCCCceEEEEEECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeec--C
Confidence 5788888877531 12211 122222222222 234 455443321 2468999999875 46 55531 1
Q ss_pred CCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-CcEEE-eeeCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 245 GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (522)
Q Consensus 245 ~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~-~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~ 322 (522)
...+ .++.....++.||+..-.+ ......++.+|+.+ ..|+. +... ............++.|++..-.++
T Consensus 318 ~~~~--~~s~~~~~g~~l~~~t~~~-~a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g-- 389 (751)
T 2xe4_A 318 EKGV--RYDVQMHGTSHLVILTNEG-GAVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAG-- 389 (751)
T ss_dssp CTTC--CEEEEEETTTEEEEEECTT-TCTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETT--
T ss_pred CCCc--eEEEeeeeCCEEEEEeCCC-CCCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCC--
Confidence 1111 1222213355577775443 12245799999876 67876 5332 111111223334677777654333
Q ss_pred CcCeEEEEEC
Q 009910 323 RHAETLIFDI 332 (522)
Q Consensus 323 ~~~~v~~yd~ 332 (522)
...++++|+
T Consensus 390 -~~~l~~~dl 398 (751)
T 2xe4_A 390 -LTRIWTMMA 398 (751)
T ss_dssp -EEEEEEEEC
T ss_pred -EEEEEEEec
Confidence 356888986
No 261
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=70.49 E-value=81 Score=30.58 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=59.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccC---CCCCccCcEEEEEc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGED---GKRRKLNDLHMFDL 231 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~---~~~~~~~~v~~yd~ 231 (522)
+..+|+.-+.... ....+.+||+.+++-. .. +|.....+.+.. .+..+|+..-.. ..+...+.+.+||+
T Consensus 32 ~~~~yv~~~~~~~--~~~~v~v~D~~t~~~~--~~---i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 32 GRRSYINLPAHHS--AIIQQWVLDAGSGSIL--GH---VNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCEEEEeCCcccC--CccEEEEEECCCCeEE--EE---ecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3567777541111 1117899999987643 21 343333322222 345788874211 11122466889999
Q ss_pred CCCcEE-EeecCCC-----CCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEE
Q 009910 232 KSLTWL-PLHCTGT-----GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (522)
Q Consensus 232 ~t~~W~-~~~~~g~-----~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 288 (522)
.+.+-. .++..+. ...|+ ..+..-+++.+|+..-. ..+.+.++| ++++-.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~--~~~~spDG~~l~v~n~~----~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSW--MNANTPNNADLLFFQFA----AGPAVGLVV-QGGSSD 160 (373)
T ss_pred CCCcEEEEEECCCccccccCCCcc--ceEECCCCCEEEEEecC----CCCeEEEEE-CCCCEE
Confidence 876532 2221100 01122 12223356667775321 135699999 877543
No 262
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=69.34 E-value=53 Score=31.59 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=73.6
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCc---EEEeeecCCCCCCCcceE-EEEE--CCEEEEEcccCCCCCccCcEEEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC---WSVVEAKGDIPVARSGHT-VVRA--SSVLILFGGEDGKRRKLNDLHMF 229 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~v~~y 229 (522)
++.+||.+.... ..++++++.... |-.-. ..+..+.+.. ++.. ++.|++..+ ...+++|
T Consensus 147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~~---~~~~~~~G~nGIv~~pdg~~Liv~~~-------~g~L~~f 211 (334)
T 2p9w_A 147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWES---GNGGQRPGYSGITFDPHSNKLIAFGG-------PRALTAF 211 (334)
T ss_dssp TSCEEEEEEESS-----CEEEEECTTSCCEEEEEECC---CCSSSCCSCSEEEEETTTTEEEEESS-------SSSEEEE
T ss_pred CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeecC---CCcccccCcceEEEeCCCCEEEEEcC-------CCeEEEE
Confidence 589999765431 349999998653 43222 1223344433 4444 346777654 2459999
Q ss_pred EcCCCcEEEeecC--CCC-CCCCcce-EEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCC---Cccc
Q 009910 230 DLKSLTWLPLHCT--GTG-PSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAG 302 (522)
Q Consensus 230 d~~t~~W~~~~~~--g~~-p~~r~~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~---~r~~ 302 (522)
|+.+....+++.. |.. ...-... ...-++++.++|.-+. +.++++-...+ |+.....+..|. ++..
T Consensus 212 D~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~ 284 (334)
T 2p9w_A 212 DVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA------PYAISFRSWDN-WKSANIKKTKRSELQNSGF 284 (334)
T ss_dssp ECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET------TEEEEEECSST-TSEEEEEEEECGGGGSSCE
T ss_pred cCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC------CCEEEEECCCC-cceeEEeeeecCccccCce
Confidence 9885433123211 211 1011111 1233677744554332 34555555555 988776554444 2333
Q ss_pred eEEEE----ECCEEEEEcccC
Q 009910 303 CCGVL----CGTKWYIAGGGS 319 (522)
Q Consensus 303 ~~~~~----~~~~iyi~GG~~ 319 (522)
.++++ .+++||++.+.-
T Consensus 285 tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 285 TAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEEEEEEETTEEEEEEEECCG
T ss_pred eEEEEeccccCCeEEEEeeec
Confidence 33334 478999988643
No 263
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=69.22 E-value=76 Score=29.81 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=33.9
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.+++.|+.+. .+..+|+.+.+....-. .. ...-.+++. -++..++.||.+. .+.+||+...
T Consensus 87 ~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~---~h-~~~v~~v~~sp~~~~l~s~~~d~------~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWDK------TLRLWDLRTGTTYKRFV---GH-QSEVYSVAFSPDNRQILSAGAER------EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETTS------EEEEEETTSSCEEEEEE---CC-CSCEEEEEECSSTTEEEEEETTS------CEEEEESSSC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCcEEEEEc---CC-CCcEEEEEECCCCCEEEEEcCCC------EEEEEeccCC
Confidence 455666676542 48889998876432211 01 111122222 2456667777543 3778887643
No 264
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=68.36 E-value=91 Score=30.34 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=81.4
Q ss_pred eEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcE--EEeeec-CCCCCCCcceEEEEE--CCEEEEEcccCCCCCccC
Q 009910 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAK-GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 224 (522)
-+++.+++++|+|=|.. +|+++.....- ..+... ..+|. ... ++... ++++|+|-| +
T Consensus 184 DAv~~~~g~~~fFkg~~--------~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg--------~ 245 (365)
T 3ba0_A 184 DAVTTVGNKIFFFKDRF--------FWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD--------D 245 (365)
T ss_dssp SCEEEETTEEEEEETTE--------EEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET--------T
T ss_pred eeEEEcCCeEEEEeCCE--------EEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC--------C
Confidence 34566799999996642 77776544321 111110 13552 333 33333 789999965 3
Q ss_pred cEEEEEcCCCc--E-EEeecCCCCCCC--CcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeee----CC
Q 009910 225 DLHMFDLKSLT--W-LPLHCTGTGPSP--RSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI----RG 294 (522)
Q Consensus 225 ~v~~yd~~t~~--W-~~~~~~g~~p~~--r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~~ 294 (522)
..|+|+..... + ..+... .+|.. ... +|.... +..+|+|-| +..|+||..+.+-..--+ .+
T Consensus 246 ~yWr~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~ 316 (365)
T 3ba0_A 246 KYWLISNLRPEPNYPKSIHSF-GFPNFVKKID-AAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKN 316 (365)
T ss_dssp EEEECSTTSCTTTCSEETTTT-TCCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHH
T ss_pred EEEEEcCCcccCCCCceeeec-cCCCCCCCcC-EEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhc
Confidence 36676543211 1 122211 13331 222 333333 345899866 368999976653111000 00
Q ss_pred CCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 295 FHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 295 ~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
-+..+..-.+|... ++++|+|-| +..|+||..+.+-..
T Consensus 317 f~g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 317 FQGIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp STTCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 01122223345555 789999977 458999998877554
No 265
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=67.29 E-value=99 Score=30.35 Aligned_cols=151 Identities=11% Similarity=0.022 Sum_probs=82.7
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
++.||+.... ...+.++|+.+++-..+.... ...+ ++. .++.||+..... . ..++++|+.+
T Consensus 141 ~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~-----~~~~-ia~~~~g~~l~~~d~~~-~----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRD------DPRVRLISVDDNKVTTVHPGF-----KGGK-PAVTKDKQRVYSIGWEG-T----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEEETC-----CBCB-CEECTTSSEEEEEBSST-T----CEEEEEEGGG
T ss_pred CCCEEEEecC------CCcEEEEECCCCEEEEeeccC-----CCCc-eeEecCCCcEEEEecCC-C----ceEEEEEcCC
Confidence 5789998642 235999999988877665421 1122 333 234667654321 1 2699999875
Q ss_pred Cc-EEEeecCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccc-e-EEEEE-
Q 009910 234 LT-WLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-C-CGVLC- 308 (522)
Q Consensus 234 ~~-W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~-~-~~~~~- 308 (522)
.. ...+... ..+....-+.+++.. +..||+... ...+++||+++.....+...+........ . ..+..
T Consensus 204 ~~~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 204 GWAPTRIGQL-GSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp TTCEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CceeEEeeec-cchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 43 2233110 010112223444444 555888422 24699999988876655332111111112 1 44444
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 309 -GTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 309 -~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
++.||+..... ..|++||+...
T Consensus 277 ~~g~lyv~d~~~-----~~I~~~~~~g~ 299 (409)
T 3hrp_A 277 VDSNFYMSDQNL-----SSVYKITPDGE 299 (409)
T ss_dssp TTTEEEEEETTT-----TEEEEECTTCC
T ss_pred CCCEEEEEeCCC-----CEEEEEecCCC
Confidence 58999985432 45999998765
No 266
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=67.07 E-value=79 Score=29.15 Aligned_cols=178 Identities=10% Similarity=0.132 Sum_probs=88.2
Q ss_pred EECCEEEEEcCcCCCCCcccEEEEEcC-CCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCCce
Q 009910 96 VIGNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRV 173 (522)
Q Consensus 96 ~~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 173 (522)
+.++.||+... ...+++||+. ...|...... . ...+.+.. ++.||+. ... .
T Consensus 105 ~~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~~~----------~----~~~~~~~~~~g~l~vg-t~~------~ 157 (330)
T 3hxj_A 105 IFEDILYVTSM------DGHLYAINTDGTEKWRFKTKK----------A----IYATPIVSEDGTIYVG-SND------N 157 (330)
T ss_dssp EETTEEEEECT------TSEEEEECTTSCEEEEEECSS----------C----CCSCCEECTTSCEEEE-CTT------S
T ss_pred EECCEEEEEec------CCEEEEEcCCCCEEEEEcCCC----------c----eeeeeEEcCCCEEEEE-cCC------C
Confidence 34788887532 1468899988 3356554321 0 11223344 5677763 221 2
Q ss_pred eEEEEECCCC-cEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCC-CcEEEeecCCCCCCCCc
Q 009910 174 SVWTFDTETE-CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLHCTGTGPSPRS 250 (522)
Q Consensus 174 ~v~~yd~~t~-~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~g~~p~~r~ 250 (522)
.++.||+... .|.... +.... .+.+. .++.||+.. ..+++||... ..|+... +...
T Consensus 158 ~l~~~d~~g~~~~~~~~-----~~~~~-~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~-----~~~~- 216 (330)
T 3hxj_A 158 YLYAINPDGTEKWRFKT-----NDAIT-SAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYA-----GYWT- 216 (330)
T ss_dssp EEEEECTTSCEEEEEEC-----SSCCC-SCCEECTTCCEEEES---------SSEEEECTTSCEEEEECC-----SSCC-
T ss_pred EEEEECCCCCEeEEEec-----CCCce-eeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEcc-----CCcc-
Confidence 4899999822 255432 22222 23333 356777643 4588999432 3465542 1111
Q ss_pred ceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc-EEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEE
Q 009910 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 328 (522)
Q Consensus 251 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~ 328 (522)
..+.+...+..||+.. . -..+++||+.... |+. ... ..... +.+.. ++.||+... . ..++
T Consensus 217 ~~~~~~~~~g~l~v~t-~-----~~gl~~~~~~g~~~~~~-~~~----~~~~~-~~~~~~~g~l~v~t~-~-----ggl~ 278 (330)
T 3hxj_A 217 VTRPAISEDGTIYVTS-L-----DGHLYAINPDGTEKWRF-KTG----KRIES-SPVIGNTDTIYFGSY-D-----GHLY 278 (330)
T ss_dssp CSCCEECTTSCEEEEE-T-----TTEEEEECTTSCEEEEE-ECS----SCCCS-CCEECTTSCEEEECT-T-----CEEE
T ss_pred eeceEECCCCeEEEEc-C-----CCeEEEECCCCCEeEEe-eCC----CCccc-cceEcCCCeEEEecC-C-----CCEE
Confidence 1223344443366642 1 1358888875444 443 221 11111 22333 577776432 1 2488
Q ss_pred EEECCCC-ceEE
Q 009910 329 IFDILKG-EWSV 339 (522)
Q Consensus 329 ~yd~~~~-~W~~ 339 (522)
+||++.. .|..
T Consensus 279 ~~d~~g~~~~~~ 290 (330)
T 3hxj_A 279 AINPDGTEKWNF 290 (330)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEE
Confidence 9997543 4554
No 267
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=66.82 E-value=71 Score=28.54 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=78.6
Q ss_pred eEEEEECCEEEEEcccCCCCCCceeEEEEECCCCc-EEEeeec---CCCCCCCcceEEEE-ECCEEEEEcccCCCCCccC
Q 009910 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 224 (522)
-|++..++++|+|=|.. +|+++..... ....... ..+|. ....+... .++++|+|=| +
T Consensus 34 DAi~~~~g~~~fFkg~~--------~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG--------~ 96 (218)
T 1gen_A 34 DGIAQIRGEIFFFKDRF--------IWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG--------N 96 (218)
T ss_dssp SEEEEETTEEEEEETTE--------EEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET--------T
T ss_pred eEEEeCCCcEEEEECCE--------EEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC--------C
Confidence 35566799999997642 8888765422 2211111 12342 33333222 2589999955 4
Q ss_pred cEEEEEcCCCc---EEEeecCCCCCCCC-cceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE-----eeeCC
Q 009910 225 DLHMFDLKSLT---WLPLHCTGTGPSPR-SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKIRG 294 (522)
Q Consensus 225 ~v~~yd~~t~~---W~~~~~~g~~p~~r-~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~~~ 294 (522)
..|+||-.+.. =..+... .+|... .--+|... .+..+|+|-| +..|+||..+++-.. +...
T Consensus 97 ~yW~y~~~~~~~gyPk~I~~~-g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~- 167 (218)
T 1gen_A 97 EYWIYSASTLERGYPKPLTSL-GLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADA- 167 (218)
T ss_dssp EEEEEETTEECTTCSEEGGGG-TCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHH-
T ss_pred EEEEEcCccccCCCCccHhhc-CCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhc-
Confidence 57888842100 0111110 122211 12233332 3445899876 368999987653211 1000
Q ss_pred CCCCCccceEEEEEC--CEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 295 FHPSPRAGCCGVLCG--TKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 295 ~~p~~r~~~~~~~~~--~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
-+..+..-.+|.... +.+|++-| +..|+||..+..
T Consensus 168 w~g~p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 168 WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp SSSCCSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred cCCCCCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 001122233444444 89999977 458899886554
No 268
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=66.82 E-value=99 Score=31.09 Aligned_cols=151 Identities=12% Similarity=0.101 Sum_probs=75.2
Q ss_pred EEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC---CCCCCCCcceEEEEE--CCcEEEEEcCCCCCCCCCc
Q 009910 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLND 276 (522)
Q Consensus 202 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~ 276 (522)
+++.+++.+|+|-|. ..|+++.....+...... ..+|.. .. ++... +++ +|+|=|. .
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~-~~fFKg~-------~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDE-VRFFKGN-------K 328 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTE-EEEEETT-------E
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCe-EEEEeCC-------E
Confidence 556689999999663 355555444333322211 123332 22 23333 455 8888663 5
Q ss_pred EEEEEcCCC--cE-EEee-eCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceE-----Eec-cCC
Q 009910 277 LYSLDFETM--IW-TRIK-IRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWS-----VAI-TSP 344 (522)
Q Consensus 277 v~~yd~~~~--~W-~~~~-~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~-----~~~-~~p 344 (522)
+|+|+..+. .+ +.+. ..+-+..+..--+|... ++++|+|-| +..|+||..+.+-. .+. ..|
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fp 401 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFP 401 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCC
Confidence 888874321 00 1111 11111112222244444 589999987 46999997654321 111 111
Q ss_pred CCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 345 SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 345 ~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
. .+..--+++. . .+++|.|-|. ..|.||..+.+
T Consensus 402 g---ip~~iDAA~~-~---~g~~YFFkg~------~ywr~d~~~~~ 434 (450)
T 1su3_A 402 G---IGHKVDAVFM-K---DGFFYFFHGT------RQYKFDPKTKR 434 (450)
T ss_dssp T---SCSCCSEEEE-E---TTEEEEEETT------EEEEEETTTTE
T ss_pred C---CCCCccEEEE-c---CCeEEEEeCC------EEEEEECCcce
Confidence 1 1111122222 2 3568888776 48888876654
No 269
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=64.94 E-value=1.6e+02 Score=31.81 Aligned_cols=242 Identities=10% Similarity=0.088 Sum_probs=117.0
Q ss_pred CCCceEEeeecCCCCCCccce--EEEEE--C-CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCC-CC
Q 009910 72 NSENWMVLSIAGDKPIPRFNH--AAAVI--G-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLK-IP 145 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~~R~~~--~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~ 145 (522)
.+.+|+.+... +.++ ++++. + +.+|+.+- . ..+++-+-...+|+++...... ...+.. ..
T Consensus 8 ~~~~~~~~~~g------~~g~i~~i~~~p~~~~~~y~~~~-~-----ggv~~S~DgG~tW~~~~~~~~~--~~~~~~~~~ 73 (763)
T 3a0f_A 8 VTAELKPVTIS------GGGFISGLVAHPTEKDLIYARTD-I-----GGTYRWNAAKWEWEPITDFIIN--NALAGNGAN 73 (763)
T ss_dssp --CEEEECSCC------BCSCEEEEEECSSSTTCEEEEES-S-----SCEEEEETTTTEEEESCTTCBT--TCSSSCCCC
T ss_pred EEEEEEeeEec------CCCceeEEEeCCCCCCEEEEEec-c-----CcEEEECCCCCCeeECccCccc--cccCCCccc
Confidence 56778888632 3333 22322 2 34666531 1 3577777778899998752100 000000 01
Q ss_pred CccceEEEEE---CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCC---CCCc-ceEEEEE---CCEEEEEcc
Q 009910 146 ACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP---VARS-GHTVVRA---SSVLILFGG 215 (522)
Q Consensus 146 ~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p---~~r~-~~~~~~~---~~~iyv~GG 215 (522)
...-++++.. .+.+|+..|..........+++=+-.-.+|+++......+ ..|. ...+++. .+.+|+.+
T Consensus 74 ~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~- 152 (763)
T 3a0f_A 74 LLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS- 152 (763)
T ss_dssp CCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC-
T ss_pred ccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe-
Confidence 1122333332 2678886653211111234555444557899987311111 1232 1234443 36777753
Q ss_pred cCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC---cceEEEEE---CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE
Q 009910 216 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR---SNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (522)
Q Consensus 216 ~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r---~~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (522)
. ...+++=+=.-.+|+++. .+|... .....+.+ +...+|+...... .+++=+-...+|+.
T Consensus 153 ~------~~~l~~S~DgG~TW~~~~---~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g-----~v~~S~DgG~tW~~ 218 (763)
T 3a0f_A 153 R------TQGLWRSTDRAQTWSRMN---QLPDSSTYGIGIISVIFDPKNVGTAYVASHAVG-----GLWVTWDGGANWSQ 218 (763)
T ss_dssp S------SSCEEEESSTTSSCEECT---TSCCCSCTTTCEEEEEECSSSTTCEEEEESSTT-----CEEEESSSSSSCEE
T ss_pred C------CCcEEEECCCCcCccccc---cCcccCCCccceEEEEECCCCCCEEEEEEeCCC-----eEEEECCCCCCccc
Confidence 1 123444333346899986 344321 22223333 2233676543211 35554445678999
Q ss_pred eeeCCCCC-----------------CCccceEEEEE-CCEEEEEcccCC---CCCcCeEEEEECCCCceEEecc
Q 009910 290 IKIRGFHP-----------------SPRAGCCGVLC-GTKWYIAGGGSR---KKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 290 ~~~~~~~p-----------------~~r~~~~~~~~-~~~iyi~GG~~~---~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
+...+... .++..+.++.. ++.+|+...... ......+++.+-...+|+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 219 VGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp CTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCT
T ss_pred cCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCC
Confidence 86431100 22333444333 578888743210 1123568999988999999864
No 270
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=64.90 E-value=1.2e+02 Score=30.30 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=62.1
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEccc---CCCCCccCcEEEEE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGE---DGKRRKLNDLHMFD 230 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~---~~~~~~~~~v~~yd 230 (522)
.+.+||.-..... ..+.|.++|+.+++-...-+.+ ... .++. .+..+|+.--. ...+...+.+.++|
T Consensus 84 ~~~vyV~n~~~~~--~~~~VsVID~~t~~vv~~I~vG-----~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 84 ARRVYIQDPAHFA--AITQQFVIDGSTGRILGMTDGG-----FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp TTEEEEEECTTTC--SSEEEEEEETTTTEEEEEEEEC-----SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEECCCcCC--CCCeEEEEECCCCEEEEEEECC-----CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 4678887543211 1178999999998754332222 222 2332 24578876310 00111246799999
Q ss_pred cCCCcEEE-eecCCCCC---CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcE
Q 009910 231 LKSLTWLP-LHCTGTGP---SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (522)
Q Consensus 231 ~~t~~W~~-~~~~g~~p---~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 287 (522)
+.+.+-.. +...+... ...-...+..-+++.+|+..-. ..+.+.++|+.+++-
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeE
Confidence 99987443 22110000 0011122333456678886321 135799999888654
No 271
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=64.35 E-value=1e+02 Score=29.77 Aligned_cols=71 Identities=6% Similarity=0.102 Sum_probs=36.1
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCCC--ceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEc
Q 009910 309 GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (522)
Q Consensus 309 ~~~iyi~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~ 386 (522)
++++++.| .+ ..+.++|+.+. .+..+...+............+.+...+ ..+++.|+.++ .|.+||+
T Consensus 188 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg----~i~iwd~ 256 (447)
T 3dw8_B 188 DYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKG----TIRLCDM 256 (447)
T ss_dssp TSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTS----CEEEEET
T ss_pred CCCEEEEe-CC-----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCC----eEEEEEC
Confidence 45666665 33 35889998732 2332221111111112223344444333 14677777654 5888888
Q ss_pred ccCC
Q 009910 387 EKNE 390 (522)
Q Consensus 387 ~~~~ 390 (522)
.+.+
T Consensus 257 ~~~~ 260 (447)
T 3dw8_B 257 RASA 260 (447)
T ss_dssp TTCS
T ss_pred cCCc
Confidence 7765
No 272
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=64.20 E-value=1.7e+02 Score=31.86 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=110.7
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCC----cEEE
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSV 187 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~ 187 (522)
..+.++++....+..+... ...-.+++.. +++||+.-.. ...|+++++... ....
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~-------------~~~~~gl~~d~~~~~lY~sD~~------~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp SSEEEECTTSCCCEEEECS-------------CSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEE
T ss_pred cceeEeeccCCcceeeecC-------------CCceEEEeecccCCeeEEeecc------ceeEEEEeccCCCCCcceeE
Confidence 4566777766666555431 1112333333 5789987432 235888887652 2333
Q ss_pred eeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEE
Q 009910 188 VEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 264 (522)
Q Consensus 188 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv 264 (522)
+... .+.. -..+++ .+++||+.-. ..+.|+++++....-+.+.. ..+..|+ ..++- .++.||+
T Consensus 465 vi~~-~l~~---P~GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~~~~l~~-~~l~~P~---gIaVDp~~g~LYw 530 (791)
T 3m0c_C 465 VISR-DIQA---PDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFR-ENGSKPR---AIVVDPVHGFMYW 530 (791)
T ss_dssp EECS-SCSC---CCEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEE-CTTCCEE---EEEEETTTTEEEE
T ss_pred EEec-CCCC---cceeeeeecCCcEEEEec------CCCeEEEEeCCCCeEEEEEe-CCCCCcc---eEEEecCCCCEEE
Confidence 3210 1221 223444 3679999732 24579999998766555432 1233332 33333 2345887
Q ss_pred EcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
.--. ....|+++++....-+.+.... +.. -.+.++- +++||+.-.. ...|+++|+....-+.+..
T Consensus 531 tD~g----~~~~I~~~~~dG~~~~~lv~~~-l~~---P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 531 TDWG----TPAKIKKGGLNGVDIYSLVTEN-IQW---PNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILE 597 (791)
T ss_dssp EECS----SSCEEEEEETTSCCEEEEECSS-CSC---EEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEE
T ss_pred ecCC----CCCeEEEEecCCCceEEEEeCC-CCC---ceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEec
Confidence 6411 1246999998766555443321 111 1133332 6899998542 3569999997765444443
Q ss_pred CCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 343 ~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
.... ....+++++.. ++||+.--. .+.|++.+..+
T Consensus 598 ~~~~---l~~P~glav~~----~~lYwtD~~----~~~I~~~dk~t 632 (791)
T 3m0c_C 598 DEKR---LAHPFSLAVFE----DKVFWTDII----NEAIFSANRLT 632 (791)
T ss_dssp CTTT---TSSEEEEEEET----TEEEEEETT----TTEEEEEETTT
T ss_pred CCCc---cCCCCEEEEeC----CEEEEEECC----CCEEEEEeCCC
Confidence 2211 12234444432 467765432 23456665443
No 273
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=62.61 E-value=1.9e+02 Score=32.80 Aligned_cols=187 Identities=10% Similarity=0.057 Sum_probs=101.4
Q ss_pred cceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEe-ec-CCCCCCCCcceEEEEE--CCcEEEEEcCCCCCCCC
Q 009910 199 SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL-HC-TGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTL 274 (522)
Q Consensus 199 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~-~g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~ 274 (522)
.++++....+.+ ++|.-... .....++.|+.....|..- .. .+.......++++++. ++...+|+|-- .....
T Consensus 335 ~GfSa~~t~d~~-~~GapG~~-~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP-~~~~~ 411 (1095)
T 3k6s_A 335 EGFSAVFTPDGP-VLGAVGSF-TWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAP-RYQHT 411 (1095)
T ss_dssp TTSSEECCTTCC-EEEESCST-TTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEET-TGGGT
T ss_pred ccccceecCCcc-eEcccccC-CccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcc-ccccc
Confidence 455555555555 77765443 3456688888765444322 11 1122233345555442 23335676622 11234
Q ss_pred CcEEEEEcCCCcEEEeee-CCCCCCCccceEEEEEC------CEEEEEcccC--CCCCcCeEEEEECCC--CceEEeccC
Q 009910 275 NDLYSLDFETMIWTRIKI-RGFHPSPRAGCCGVLCG------TKWYIAGGGS--RKKRHAETLIFDILK--GEWSVAITS 343 (522)
Q Consensus 275 ~~v~~yd~~~~~W~~~~~-~~~~p~~r~~~~~~~~~------~~iyi~GG~~--~~~~~~~v~~yd~~~--~~W~~~~~~ 343 (522)
..+++|......|+.... .+......++.+.+..+ ..++++|.-. .......+++|.... ..|+.....
T Consensus 412 G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l 491 (1095)
T 3k6s_A 412 GKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVL 491 (1095)
T ss_dssp CEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSC
T ss_pred ceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEEe
Confidence 579999988888987664 33334456777776642 2576777432 123346788886543 458754333
Q ss_pred CCCC--CCCCCCcEEEEEeeC---CccEEEEEcC-CCCCCCCcEEEEEcccC
Q 009910 344 PSSS--VTSNKGFTLVLVQHK---EKDFLVAFGG-IKKEPSNQVEVLSIEKN 389 (522)
Q Consensus 344 p~~~--~~~r~~~~~~~~~~~---~~~~l~v~GG-~~~~~~~~v~~y~~~~~ 389 (522)
.... +..+++.+++.+++- +..-|+ +|. ........|++|.-..+
T Consensus 492 ~g~~~~~~~~FG~sva~~gD~NgDG~~Dl~-VGAP~~~~~~G~vyi~~g~~~ 542 (1095)
T 3k6s_A 492 YGEQGHPWGRFGAALTVLGDVNGDKLTDVV-IGAPGEEENRGAVYLFHGVLG 542 (1095)
T ss_dssp CCCCSCSSCCBTSCEEEEECSSSSSCCEEE-EECTTTTTSCCBEEEEEBCSS
T ss_pred ecccCCccccCccceEeecccCCCCCcCEE-EeCCcCCCCCCEEEEecCCCC
Confidence 2222 356788888887542 223353 443 22234667888887655
No 274
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=62.32 E-value=1e+02 Score=28.67 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=73.5
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++..++.|+.+. .+.+||+.+++-...-. .... .-.++.. -++.+++.|+.+.. +.+||+...
T Consensus 76 dg~~l~s~s~D~------~v~~wd~~~~~~~~~~~---~h~~-~v~~~~~~~~~~~l~s~s~D~~------i~vwd~~~~ 139 (319)
T 3frx_A 76 DGAYALSASWDK------TLRLWDVATGETYQRFV---GHKS-DVMSVDIDKKASMIISGSRDKT------IKVWTIKGQ 139 (319)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSS-CEEEEEECTTSCEEEEEETTSC------EEEEETTSC
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCeeEEEc---cCCC-cEEEEEEcCCCCEEEEEeCCCe------EEEEECCCC
Confidence 566667776542 48889998876322211 0111 1112222 24677777776543 777888655
Q ss_pred cEEEeecCCCCCCCCcceEEEEEC------CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYD------DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~------~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~ 308 (522)
.-..+. .. ...-.+..... +..+++.|+.++ .+..||+.+..-...-. + ....-.+++..
T Consensus 140 ~~~~~~---~h--~~~v~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~-~---h~~~v~~~~~s 205 (319)
T 3frx_A 140 CLATLL---GH--NDWVSQVRVVPNEKADDDSVTIISAGNDK-----MVKAWNLNQFQIEADFI-G---HNSNINTLTAS 205 (319)
T ss_dssp EEEEEC---CC--SSCEEEEEECCC------CCEEEEEETTS-----CEEEEETTTTEEEEEEC-C---CCSCEEEEEEC
T ss_pred eEEEEe---cc--CCcEEEEEEccCCCCCCCccEEEEEeCCC-----EEEEEECCcchhheeec-C---CCCcEEEEEEc
Confidence 433332 10 11111122221 222556665543 48889987654332211 1 11111122222
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 309 -GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 309 -~~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
++++++.|+.++ .+.++|+.+.+
T Consensus 206 p~g~~l~s~~~dg-----~i~iwd~~~~~ 229 (319)
T 3frx_A 206 PDGTLIASAGKDG-----EIMLWNLAAKK 229 (319)
T ss_dssp TTSSEEEEEETTC-----EEEEEETTTTE
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCCc
Confidence 667778888664 38899988765
No 275
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=61.46 E-value=1.3e+02 Score=29.58 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=44.0
Q ss_pred CCEEEEEccc----CCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEE
Q 009910 309 GTKWYIAGGG----SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (522)
Q Consensus 309 ~~~iyi~GG~----~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y 384 (522)
++++|+.-+. +.....++|+++|+.+.+-..-... ...-.+ +.+..+++..||+.-+. .++|.++
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~~-lavs~D~~~~ly~tn~~----~~~VsVi 359 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDS-INVSQDEKPLLYALSTG----DKTLYIH 359 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECE-EEECSSSSCEEEEEETT----TTEEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcce-EEECCCCCeEEEEEcCC----CCeEEEE
Confidence 6899997432 1223457899999998775543211 111123 44444445578875432 3479999
Q ss_pred EcccCCccc
Q 009910 385 SIEKNESSM 393 (522)
Q Consensus 385 ~~~~~~w~~ 393 (522)
|..+.+-..
T Consensus 360 D~~t~k~~~ 368 (386)
T 3sjl_D 360 DAESGEELR 368 (386)
T ss_dssp ETTTCCEEE
T ss_pred ECCCCcEEE
Confidence 999887444
No 276
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=60.97 E-value=94 Score=27.91 Aligned_cols=148 Identities=12% Similarity=0.046 Sum_probs=76.2
Q ss_pred ECCEEEEEcccCCCCCCceeEEEEEC------CCCcEEEeeec---CCCCC-----CCcceEEEEECCEEEEEcccCCCC
Q 009910 155 WGKKVLLVGGKTDSGSDRVSVWTFDT------ETECWSVVEAK---GDIPV-----ARSGHTVVRASSVLILFGGEDGKR 220 (522)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~------~t~~W~~~~~~---~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~ 220 (522)
.++.+|+|-|. -+|+++. ........... ..+|. .....+....++++|+|=|
T Consensus 12 ~~ge~~fFk~~--------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg----- 78 (225)
T 3oyo_A 12 SEYEVYFFAKN--------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG----- 78 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET-----
T ss_pred CCCEEEEEECC--------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC-----
Confidence 37899999663 2888882 11112111100 12452 2333222225799999965
Q ss_pred CccCcEEEEEcCC----CcEEEee--c---CCCCCCC----CcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCc
Q 009910 221 RKLNDLHMFDLKS----LTWLPLH--C---TGTGPSP----RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (522)
Q Consensus 221 ~~~~~v~~yd~~t----~~W~~~~--~---~g~~p~~----r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 286 (522)
+..|+||..+ .....-+ . -..+|.. ... +|... .+..+|+|-| +..|+||..+.+
T Consensus 79 ---~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~ID-AA~~~~~~gk~yfFkG-------~~yw~~d~~~~~ 147 (225)
T 3oyo_A 79 ---NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSID-SAFRSTKGKEVYLFKG-------NKYVRIAYDSKQ 147 (225)
T ss_dssp ---TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCC-EEEECSSTTEEEEEET-------TEEEEEETTTTE
T ss_pred ---CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccc-eEEEECCCCcEEEEeC-------CeEEEEECCCCe
Confidence 3578887632 2221100 0 0123321 222 22232 2445999977 368999976665
Q ss_pred EEEeee-CC-CCCC------CccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECC
Q 009910 287 WTRIKI-RG-FHPS------PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 287 W~~~~~-~~-~~p~------~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
...-+. .. ..|. +..-.+|... ++++|++-| +..|+||..
T Consensus 148 ~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 148 LVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp EEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred ecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 443110 00 0111 2233344443 789999987 458999987
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=60.19 E-value=1.3e+02 Score=29.36 Aligned_cols=220 Identities=11% Similarity=0.061 Sum_probs=115.0
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCC----cEEE
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSV 187 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~ 187 (522)
+++.++++....+..+... ...-.+++.. ++.||+.--. ...++++++... ....
T Consensus 92 ~~I~~i~l~~~~~~~~~~~-------------~~~~~~l~~d~~~~~lywsD~~------~~~I~~~~~~g~~~~~~~~~ 152 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDT 152 (400)
T ss_dssp TEEEEECTTSCSCEEEECS-------------CSCEEEEEEETTTTEEEEEETT------TTEEEEEEC------CCCEE
T ss_pred ceeEEEccCCcceeEeccc-------------cCcceEEeeeeccCceEEEecC------CCeEEEEEcccCCCCCcceE
Confidence 5677888887766665431 1122344443 5889987322 235888888752 2233
Q ss_pred eeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEE
Q 009910 188 VEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 264 (522)
Q Consensus 188 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv 264 (522)
+.. ..+ ..-..+++ .++.||+.-. ..+.++++|++...-..+... .+..|+ ..++- .++.||+
T Consensus 153 ~~~-~~~---~~p~glavD~~~~~lY~~d~------~~~~I~~~~~~g~~~~~l~~~-~~~~P~---~iavdp~~g~ly~ 218 (400)
T 3p5b_L 153 VIS-RDI---QAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRE-NGSKPR---AIVVDPVHGFMYW 218 (400)
T ss_dssp EEC-SSC---SCEEEEEEETTTTEEEEEET------TTTEEEEECTTTCSEEEEEEC-SSCCEE---EEEEETTTTEEEE
T ss_pred EEe-CCC---CCcccEEEEecCCceEEEEC------CCCeEEEEeCCCCceEEEEeC-CCCCcc---eEEEecccCeEEE
Confidence 321 011 12233444 3689999742 235689999987665544321 222232 33333 2445777
Q ss_pred EcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
.--. ....|++++++...=+.+...+ . ..-.+.++- +++||+.-.. ...|+++|++...-+.+..
T Consensus 219 td~~----~~~~I~~~~~dG~~~~~~~~~~-l---~~P~glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~ 285 (400)
T 3p5b_L 219 TDWG----TPAKIKKGGLNGVDIYSLVTEN-I---QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILE 285 (400)
T ss_dssp EECS----SSCCEEEEETTSCSCEEEECSS-C---SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEEEE
T ss_pred EeCC----CCCEEEEEeCCCCccEEEEECC-C---CceEEEEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEEEe
Confidence 5311 1246999998765434432211 1 111233333 6899998543 3569999998765444443
Q ss_pred CCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 343 ~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+. .....+++++.. +.||+.-- ..+.|+++|..+.+
T Consensus 286 ~~~---~l~~P~gl~v~~----~~lywtd~----~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 286 DEK---RLAHPFSLAVFE----DKVFWTDI----INEAIFSANRLTGS 322 (400)
T ss_dssp CSS---TTSSEEEEEEET----TEEEEEES----SSCSEEEEESSSCC
T ss_pred CCC---CCCCCEEEEEeC----CEEEEecC----CCCeEEEEEcCCCC
Confidence 221 112234554432 56777652 23468888865554
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=58.49 E-value=1.5e+02 Score=31.89 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=79.7
Q ss_pred cccEEEEEcCCC--cE--EEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEcccCCCCCCceeEEEEECCC-CcEE
Q 009910 113 LDDVQVLNFDRF--SW--TAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWS 186 (522)
Q Consensus 113 ~~~v~~yd~~~~--~W--~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t-~~W~ 186 (522)
.++++++|+.+. .+ +.+... . ....++.. ..++.||+..-.+ ......++.+|..+ ..|+
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~----------~--~~~~~s~~~~~g~~l~~~t~~~--~a~~~~L~~~d~~~~~~~~ 359 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPR----------E--KGVRYDVQMHGTSHLVILTNEG--GAVNHKLLIAPRGQPSDWS 359 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCC----------C--TTCCEEEEEETTTEEEEEECTT--TCTTCEEEEEETTSTTCCC
T ss_pred CceEEEEECCCCCCCceeEEeecC----------C--CCceEEEeeeeCCEEEEEeCCC--CCCCcEEEEEcCCCcccce
Confidence 467888888764 45 444331 0 00112222 3378888886543 12334699999886 6787
Q ss_pred E-eeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEc-------CCCc-EEEeecCCCCCCCCcceEEEE-
Q 009910 187 V-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL-------KSLT-WLPLHCTGTGPSPRSNHVAAL- 256 (522)
Q Consensus 187 ~-~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-------~t~~-W~~~~~~g~~p~~r~~~~~~~- 256 (522)
. +-+. .....-......++.|++..-.+. ...++++|+ .+.+ -..+. +|... +....
T Consensus 360 ~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~~~~~~~~g~~~~~l~----l~~~~--~~~~~~ 426 (751)
T 2xe4_A 360 HVLVDH---SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMADSQDGVFKAGTGLREVV----MEEPI--FTVHLV 426 (751)
T ss_dssp CEEECC---CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEECCTTTSCCCTTTCCEECC----CCCSS--CEEEEC
T ss_pred eeEECC---CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEecccccccccCCccceEEC----CCCce--eEEEec
Confidence 6 4321 111111233345677777654332 467899996 3444 44442 33322 22222
Q ss_pred ------ECCc-EEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC
Q 009910 257 ------YDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 293 (522)
Q Consensus 257 ------~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 293 (522)
.++. .+|.+.+. .....++.||+.+++.+.+...
T Consensus 427 ~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~~~ 467 (751)
T 2xe4_A 427 ESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVKVR 467 (751)
T ss_dssp GGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEEEC
T ss_pred cCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEecc
Confidence 1333 33333322 2235789999988888777653
No 279
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=57.74 E-value=2.3e+02 Score=31.49 Aligned_cols=195 Identities=11% Similarity=0.062 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCC
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 193 (522)
.++|+++..+.+-..+... +.........-+++.+++...........++|.+|..+++-..+..
T Consensus 33 ~~l~~~~~~gg~~~~lt~~------------~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~--- 97 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVSN------------LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY--- 97 (1045)
T ss_dssp TEEEEEETTTCCEEEEECS------------SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC---
T ss_pred CcEEEEECCCCcEEEeeeC------------CCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEccc---
Confidence 4789999988776666531 1111111222255555554432111234579999999887555542
Q ss_pred CCCC---Cc-c-eEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcC
Q 009910 194 IPVA---RS-G-HTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 267 (522)
Q Consensus 194 ~p~~---r~-~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG 267 (522)
.+.. |. . ..++. -++++++.+..+........+|.+|+.+.+-..+. ..+. ...+... . +++.|.
T Consensus 98 ~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~----~~~~~sp-G-~l~~~~ 168 (1045)
T 1k32_A 98 FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPA----THILFAD-G-RRVIGR 168 (1045)
T ss_dssp CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSC----SEEEEET-T-EEEEEE
T ss_pred CCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEec---CCCc----ceeeeCC-C-EEEEec
Confidence 1110 00 0 12222 25666666654432223457999999888776664 2221 1222334 3 444443
Q ss_pred CCC---------CCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceE
Q 009910 268 SSK---------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (522)
Q Consensus 268 ~~~---------~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~ 338 (522)
... .....++|.++.. .....+.. ......+.+..++++++.+..++ ...+|.+++.+..-.
T Consensus 169 ~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~-----~~~~v~~~~~s~d~l~~~~~~dg---~~~l~~~~~~g~~~~ 239 (1045)
T 1k32_A 169 NTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVD-----MSTHVSSPVIVGHRIYFITDIDG---FGQIYSTDLDGKDLR 239 (1045)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEEC-----CSSCCEEEEEETTEEEEEECTTS---SCEEEEEETTSCSCE
T ss_pred cCCCccccccccCCCcCCEEEECCC-CCeEECcC-----CCCcccceEEeCCEEEEEEeccC---ceEEEEEeCCCCcce
Confidence 211 1123567776654 66666632 12222334444678877765432 356899998776655
Q ss_pred Eec
Q 009910 339 VAI 341 (522)
Q Consensus 339 ~~~ 341 (522)
.+.
T Consensus 240 ~l~ 242 (1045)
T 1k32_A 240 KHT 242 (1045)
T ss_dssp ECC
T ss_pred Eec
Confidence 554
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=57.34 E-value=1.4e+02 Score=28.87 Aligned_cols=218 Identities=9% Similarity=-0.029 Sum_probs=116.3
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (522)
+.+.++++.......+... ...-.+++.. ++.||+.-- ....++++++.....+.+...
T Consensus 96 ~~I~~i~~~~~~~~~~~~~-------------~~~~~gl~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN-------------LENAIALDFHHRRELVFWSDV------TLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SCEEEECTTSCCCEEEECS-------------CSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCCEEEEECS
T ss_pred ccceeeccCCCcEEEEecC-------------CCccEEEEEecCCCeEEEEeC------CCCcEEEEecCCCCcEEEEeC
Confidence 5678888887665554431 1112334433 588998732 123699999998876665421
Q ss_pred CCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCC
Q 009910 192 GDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (522)
Q Consensus 192 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~ 268 (522)
.+..+ ..+++ .++.||+.-. ..+.+++++++...-+.+.. ..+..|+ ..++- .++.||+.--.
T Consensus 157 -~~~~p---~glavd~~~g~lY~~d~------~~~~I~~~~~dg~~~~~l~~-~~l~~P~---giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 157 -GLESP---GGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLW-QSLEKPR---AIALHPMEGTIYWTDWG 222 (386)
T ss_dssp -SCSCC---CCEEEETTTTEEEEEET------TTTEEEECBTTSCSCEEEEC-SSCSCEE---EEEEETTTTEEEEEECS
T ss_pred -CCCCc---cEEEEEeCCCeEEEEcC------CCCeEEEEeCCCCceEEeec-CCCCCCc---EEEEEcCCCeEEEeccC
Confidence 12222 23333 3689998732 23468888887654333321 1222232 23333 24557776321
Q ss_pred CCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEE--ECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCC
Q 009910 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (522)
Q Consensus 269 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 346 (522)
. ...|++++++...-+.+...+ . ..-.+.++ .+++||+.-... ..|+++|++...-..+.....
T Consensus 223 ~----~~~I~r~~~dG~~~~~~~~~~---~-~~PnGlavd~~~~~lY~aD~~~-----~~I~~~d~dG~~~~~~~~~~~- 288 (386)
T 3v65_B 223 N----TPRIEASSMDGSGRRIIADTH---L-FWPNGLTIDYAGRRMYWVDAKH-----HVIERANLDGSHRKAVISQGL- 288 (386)
T ss_dssp S----SCEEEEEETTSCSCEEEECSS---C-SCEEEEEEEGGGTEEEEEETTT-----TEEEEECTTSCSCEEEECSSC-
T ss_pred C----CCEEEEEeCCCCCcEEEEECC---C-CCeeeEEEeCCCCEEEEEECCC-----CEEEEEeCCCCeeEEEEECCC-
Confidence 1 357999998765444443221 1 11123333 278999985432 569999987654333332111
Q ss_pred CCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 347 ~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
..-+++++. .+.||+.-- ..+.|.+++..+.+
T Consensus 289 ----~~P~giav~----~~~ly~td~----~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 289 ----PHPFAITVF----EDSLYWTDW----HTKSINSANKFTGK 320 (386)
T ss_dssp ----SSEEEEEEE----TTEEEEEET----TTTEEEEEETTTCC
T ss_pred ----CCceEEEEE----CCEEEEeeC----CCCeEEEEECCCCc
Confidence 112344442 256777642 23468888854443
No 281
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=57.29 E-value=1.4e+02 Score=28.89 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=79.9
Q ss_pred EEEEECCEEEEEcCcCCCCCcccEEEEEcCCCcE--EEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEcccCCCC
Q 009910 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSW--TAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG 169 (522)
Q Consensus 93 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~ 169 (522)
+++.+++++|+|=| +.+|+++.....- ..+... -| .+|.....+... .++++|+|-|.
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~---wp-----gLP~~iDAa~~~~~~g~~~fFkg~---- 245 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSL---WP-----TLPSGIEAAYEIEARNQVFLFKDD---- 245 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHH---CS-----SCCSSCCEEEEEGGGTEEEEEETT----
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhh---cc-----CCCCCccEEEEecCCCEEEEEeCC----
Confidence 44567899999976 4466665443211 111111 00 122223333333 27899999664
Q ss_pred CCceeEEEEECCCCc--E-EEeeecCCCCCC--CcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecC
Q 009910 170 SDRVSVWTFDTETEC--W-SVVEAKGDIPVA--RSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~--W-~~~~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 242 (522)
.+|+|+..... + ..+... .+|.. ... ++... ++++|+|-| +..|+||..+.+-..--+.
T Consensus 246 ----~yWr~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyPk 311 (365)
T 3ba0_A 246 ----KYWLISNLRPEPNYPKSIHSF-GFPNFVKKID-AAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYPK 311 (365)
T ss_dssp ----EEEECSTTSCTTTCSEETTTT-TCCTTCCCCC-EEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCC
T ss_pred ----EEEEEcCCcccCCCCceeeec-cCCCCCCCcC-EEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCCc
Confidence 28888754321 1 122211 14432 233 33333 479999955 4589999876542210000
Q ss_pred ------CCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE
Q 009910 243 ------GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (522)
Q Consensus 243 ------g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 289 (522)
..+| ..--+|....+..+|+|=| +..|+||..+.+-..
T Consensus 312 ~I~~~f~g~p--~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 312 LITKNFQGIG--PKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp CHHHHSTTCC--SSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred chhhcCCCCC--CccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 0122 2223444453444888866 369999988776554
No 282
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=57.19 E-value=1.3e+02 Score=31.76 Aligned_cols=113 Identities=9% Similarity=-0.039 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCc---EEEeecCCCC-CCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEE----cCCCcEEEeee---
Q 009910 224 NDLHMFDLKSLT---WLPLHCTGTG-PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD----FETMIWTRIKI--- 292 (522)
Q Consensus 224 ~~v~~yd~~t~~---W~~~~~~g~~-p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd----~~~~~W~~~~~--- 292 (522)
.+++++|+.+.+ |..+.....+ .........+...++.+++... +.......++.+| +.++++..+..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~-~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~ 302 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWL-KRVQNVSVLSICDFREDWQTWDCPKTQEHIE 302 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEE-ESSTTEEEEEEEEECSSSSSEECCGGGEEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEe-ccccCeEEEEEEcccCCCCCCceEEEEeccc
Confidence 378889988765 2344210000 0111122333334454554421 1112234699999 77766554431
Q ss_pred CCCCCCCccc---e-EEEE-ECC-EEEEEcccCCCCCcCeEEEEECCCCceEEec
Q 009910 293 RGFHPSPRAG---C-CGVL-CGT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 293 ~~~~p~~r~~---~-~~~~-~~~-~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~ 341 (522)
.+ ...... + ..+. -++ .|++...... ....++.+|+.+.+.+.+.
T Consensus 303 ~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~--g~~~l~~~~~~~~~~~~lt 353 (719)
T 1z68_A 303 ES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKD--GYKHIHYIKDTVENAIQIT 353 (719)
T ss_dssp EC--SSSCSSSSSCCCCEECTTSSCEEEEEECTT--SCEEEEEESSCSTTCEECS
T ss_pred cc--CCceEccccCCccEECCCCCeEEEEEEccC--CceEEEEEECCCCceEecc
Confidence 11 111111 0 1122 244 4555332211 1357999999888766654
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=56.35 E-value=1.5e+02 Score=28.75 Aligned_cols=196 Identities=7% Similarity=-0.029 Sum_probs=105.0
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEcccCCCC
Q 009910 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (522)
Q Consensus 92 ~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 169 (522)
.+++.. ++.||+.-- ..+.++++++.....+.+.... .....+.++-..++.||+.-..
T Consensus 119 ~gl~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~----------~~~p~glavd~~~g~lY~~d~~---- 179 (386)
T 3v65_B 119 IALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTG----------LESPGGLAVDWVHDKLYWTDSG---- 179 (386)
T ss_dssp EEEEEETTTTEEEEEET-----TTTEEEEEETTSCCEEEEECSS----------CSCCCCEEEETTTTEEEEEETT----
T ss_pred EEEEEecCCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCC----------CCCccEEEEEeCCCeEEEEcCC----
Confidence 344443 477888742 1357899999887665543311 1111222222237899987432
Q ss_pred CCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 009910 170 SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (522)
Q Consensus 170 ~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~ 247 (522)
...++++++....-..+.. ..+..+ ..+++. ++.||+.--. ....++++++....-+.+... .+..
T Consensus 180 --~~~I~~~~~dg~~~~~l~~-~~l~~P---~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~~~~-~~~~ 247 (386)
T 3v65_B 180 --TSRIEVANLDGAHRKVLLW-QSLEKP---RAIALHPMEGTIYWTDWG-----NTPRIEASSMDGSGRRIIADT-HLFW 247 (386)
T ss_dssp --TTEEEECBTTSCSCEEEEC-SSCSCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCSCEEEECS-SCSC
T ss_pred --CCeEEEEeCCCCceEEeec-CCCCCC---cEEEEEcCCCeEEEeccC-----CCCEEEEEeCCCCCcEEEEEC-CCCC
Confidence 2358888887655443332 122222 234443 6789886311 135799999876544443211 1211
Q ss_pred CCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCe
Q 009910 248 PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAE 326 (522)
Q Consensus 248 ~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~ 326 (522)
| ...++- .++.||+.-. ..+.|+++|+....-+.+...+ .+ .-.++++.++.||+..-.. ..
T Consensus 248 P---nGlavd~~~~~lY~aD~-----~~~~I~~~d~dG~~~~~~~~~~-~~---~P~giav~~~~ly~td~~~-----~~ 310 (386)
T 3v65_B 248 P---NGLTIDYAGRRMYWVDA-----KHHVIERANLDGSHRKAVISQG-LP---HPFAITVFEDSLYWTDWHT-----KS 310 (386)
T ss_dssp E---EEEEEEGGGTEEEEEET-----TTTEEEEECTTSCSCEEEECSS-CS---SEEEEEEETTEEEEEETTT-----TE
T ss_pred e---eeEEEeCCCCEEEEEEC-----CCCEEEEEeCCCCeeEEEEECC-CC---CceEEEEECCEEEEeeCCC-----Ce
Confidence 1 123332 3555888742 2357999998754433333221 11 2235555788999986322 45
Q ss_pred EEEEECCCC
Q 009910 327 TLIFDILKG 335 (522)
Q Consensus 327 v~~yd~~~~ 335 (522)
|.++|..+.
T Consensus 311 V~~~~~~~G 319 (386)
T 3v65_B 311 INSANKFTG 319 (386)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 889985443
No 284
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=56.24 E-value=78 Score=28.33 Aligned_cols=142 Identities=18% Similarity=0.307 Sum_probs=73.9
Q ss_pred ECCEEEEEcccCCCCCCceeEEEEECCCCcEE--Eeeec-CCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEc
Q 009910 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWS--VVEAK-GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 155 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~--~~~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
.++++|+|=|.. +|+++.....+. .+... ..+|. ... ++...++++|+|=| +..|+|+.
T Consensus 27 ~~g~~yfFkg~~--------~Wr~~~~~~~~~p~~Is~~wpgLP~-~ID-AA~~~~~~~yfFkG--------~~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSGSH--------YWRLDTNRDGWHSWPIAHQWPQGPS-TVD-AAFSWEDKLYLIQD--------TKVYVFLT 88 (219)
T ss_dssp TTSCEEEEETTE--------EEESSSSSCTTCCEEGGGTCTTSCS-SCS-EEEEETTEEEEEET--------TEEEEEEC
T ss_pred CCCcEEEEeCCE--------EEEEcCCCCCCCceEhhhhccCCCC-Ccc-EEEEECCcEEEecC--------CEEEEEeC
Confidence 478999996642 788775443321 12110 13453 233 34445899999955 45889986
Q ss_pred CCC-cE-----EEeecCCCCCCC----CcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCC---cEEEeeeCCCCC
Q 009910 232 KSL-TW-----LPLHCTGTGPSP----RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHP 297 (522)
Q Consensus 232 ~t~-~W-----~~~~~~g~~p~~----r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~p 297 (522)
.++ +- ..+...-.+|.. +.. +|... +++.+|+|-| +..|+||..+. .|..... +
T Consensus 89 ~~~~~~~~gyPk~i~~~~G~p~~~~~~~ID-AA~~~~~~gk~yfFkG-------~~ywr~d~~~~P~~i~~~~~g----~ 156 (219)
T 1hxn_A 89 KGGYTLVNGYPKRLEKELGSPPVISLEAVD-AAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPW----P 156 (219)
T ss_dssp SSSCEECTTCCEEHHHHHCCCSSCCCSCCC-EEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECC----S
T ss_pred CCCceecCCCCeehhhccCCCCcccccccc-eeEEecCCCEEEEEeC-------CEEEEEeCCCCceEhhhcCCC----C
Confidence 532 10 111100013332 122 22223 3445899877 36899997542 3433221 1
Q ss_pred CCccceEEEE------------ECCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 298 SPRAGCCGVL------------CGTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 298 ~~r~~~~~~~------------~~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
.... .+|.. .++.+|++-| +.-|+||..+
T Consensus 157 p~~v-dAa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~~ 197 (219)
T 1hxn_A 157 HEKV-DGALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHVD 197 (219)
T ss_dssp CSCC-SEEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSHH
T ss_pred CCCc-CEEEEccccccccceeccCCeEEEEEC-------CEEEEEeCCc
Confidence 1222 23333 3467999877 3578887644
No 285
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=54.53 E-value=2.4e+02 Score=30.54 Aligned_cols=246 Identities=15% Similarity=0.173 Sum_probs=116.1
Q ss_pred CCCceEEeeecCCCCC-----CccceEEEEEC---CEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCC
Q 009910 72 NSENWMVLSIAGDKPI-----PRFNHAAAVIG---NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLK 143 (522)
Q Consensus 72 ~~~~W~~l~~~~~~p~-----~R~~~~~~~~~---~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 143 (522)
...+|+.+. ..+. .+.-+++++.. +.+|+..|.........+++=+-...+|+.+..... .+ ..
T Consensus 45 gG~tW~~~~---~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~-~~----~~ 116 (789)
T 1sqj_A 45 GTSKWIPLN---DFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFP-MG----AN 116 (789)
T ss_dssp TTTEEEESC---TTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSC-CC----TT
T ss_pred CCCCeeECc---cCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcc-cC----cc
Confidence 567899985 2221 12334444432 468887664221111334443334569999864110 00 00
Q ss_pred CCCc-cceEEEEE---CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcc
Q 009910 144 IPAC-RGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGG 215 (522)
Q Consensus 144 ~~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG 215 (522)
.+.+ ..+.+++. .+.+|+ |... ..+++=+-.-.+|+.+.....+...-.+.....+ .+.||+...
T Consensus 117 ~~~~~~~~~iav~p~~~~~v~~-g~~~------~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 117 DMGRNNGERLAVNPFNSNEVWM-GTRT------EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASAT 189 (789)
T ss_dssp STTTTSCCCEEEETTEEEEEEE-ECSS------SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEES
T ss_pred CCCccceeEEEEcCCCCCEEEE-Eecc------CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEc
Confidence 1222 22344443 245666 3321 2266554445789988631111111122222332 246777543
Q ss_pred cCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC----------------cceEEEEEC-CcEEEEEcCCCC---CCCCC
Q 009910 216 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR----------------SNHVAALYD-DKNLLIFGGSSK---SKTLN 275 (522)
Q Consensus 216 ~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----------------~~~~~~~~~-~~~lyv~GG~~~---~~~~~ 275 (522)
.. ..+++=.-.-.+|+.+. ..|... ..|.+++.. +..||+..+... .....
T Consensus 190 ~~------~~v~~S~DgG~TW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g 260 (789)
T 1sqj_A 190 AP------QGMYVTHDGGVSWEPVA---GQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFG 260 (789)
T ss_dssp ST------TCEEEESSTTSSCEECT---TCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCC
T ss_pred CC------CeEEEEcCCCcCcccCC---CCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCc
Confidence 21 22333222346899986 223211 114444432 444777632110 01235
Q ss_pred cEEEEEcCCCcEEEeeeCCCC--CCC----cc---ceEEEEE----CCEEEEEcccCCC-CCcCeEEEEECCCCceEEec
Q 009910 276 DLYSLDFETMIWTRIKIRGFH--PSP----RA---GCCGVLC----GTKWYIAGGGSRK-KRHAETLIFDILKGEWSVAI 341 (522)
Q Consensus 276 ~v~~yd~~~~~W~~~~~~~~~--p~~----r~---~~~~~~~----~~~iyi~GG~~~~-~~~~~v~~yd~~~~~W~~~~ 341 (522)
.+++.+-...+|+.+...+.. |.+ .+ +...+.+ .+.||+.++.... .....+++-+-...+|+.+.
T Consensus 261 ~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 261 EVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp CEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEESSTTSSEEEHH
T ss_pred eEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEecCCCCCceeCc
Confidence 689999889999998753110 111 12 3333333 2467777653210 01134666655678999986
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=53.21 E-value=2.5e+02 Score=30.44 Aligned_cols=188 Identities=12% Similarity=-0.005 Sum_probs=101.5
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCC----cEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcccCCCCCC
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRF----SWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSD 171 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 171 (522)
++.||+.-.. .+.++++++... ....+... .... -.++++ .++.||+.-..
T Consensus 435 ~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~~----------~l~~--P~GLAvD~~~~~LY~tD~~------ 491 (791)
T 3m0c_C 435 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISR----------DIQA--PDGLAVDWIHSNIYWTDSV------ 491 (791)
T ss_dssp TTEEEEEETT-----TTEEEEEEC--------CEEEECS----------SCSC--CCEEEEETTTTEEEEEETT------
T ss_pred CCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEec----------CCCC--cceeeeeecCCcEEEEecC------
Confidence 4778887532 246778887652 22222211 0111 123333 36799987322
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 249 (522)
...|+++++....-+.+.. ..+..+ ..+++ .++.||+.-- .....|+++++....-+.+.. ..+..
T Consensus 492 ~~~I~v~~ldG~~~~~l~~-~~l~~P---~gIaVDp~~g~LYwtD~-----g~~~~I~~~~~dG~~~~~lv~-~~l~~-- 559 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFR-ENGSKP---RAIVVDPVHGFMYWTDW-----GTPAKIKKGGLNGVDIYSLVT-ENIQW-- 559 (791)
T ss_dssp TTEEEEEETTSSSEEEEEE-CTTCCE---EEEEEETTTTEEEEEEC-----SSSCEEEEEETTSCCEEEEEC-SSCSC--
T ss_pred CCeEEEEeCCCCeEEEEEe-CCCCCc---ceEEEecCCCCEEEecC-----CCCCeEEEEecCCCceEEEEe-CCCCC--
Confidence 3369999998776555542 123222 23444 3589998631 112569999987655444431 12222
Q ss_pred cceEEEEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC-CCCCCCccceEEEEECCEEEEEcccCCCCCcCe
Q 009910 250 SNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAE 326 (522)
Q Consensus 250 ~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~ 326 (522)
....++ .++.||+.-. ..+.|+++++....-+.+... +.++ ...++++.+++||+.--.. ..
T Consensus 560 --P~GLavD~~~~~LYwaD~-----~~~~I~~~d~dG~~~~~v~~~~~~l~---~P~glav~~~~lYwtD~~~-----~~ 624 (791)
T 3m0c_C 560 --PNGITLDLLSGRLYWVDS-----KLHSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDIIN-----EA 624 (791)
T ss_dssp --EEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCEEEEECTTTTS---SEEEEEEETTEEEEEETTT-----TE
T ss_pred --ceEEEEecCCCeEEEEeC-----CCCcEEEEecCCCceEEEecCCCccC---CCCEEEEeCCEEEEEECCC-----CE
Confidence 223333 3556888742 245799999976554444332 1222 2345666789999986433 45
Q ss_pred EEEEECCCC
Q 009910 327 TLIFDILKG 335 (522)
Q Consensus 327 v~~yd~~~~ 335 (522)
|+++|..+.
T Consensus 625 I~~~dk~tG 633 (791)
T 3m0c_C 625 IFSANRLTG 633 (791)
T ss_dssp EEEEETTTC
T ss_pred EEEEeCCCC
Confidence 888886554
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=51.59 E-value=1.5e+02 Score=27.56 Aligned_cols=197 Identities=12% Similarity=0.004 Sum_probs=103.9
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCC----CcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEc
Q 009910 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVG 163 (522)
Q Consensus 92 ~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~G 163 (522)
++.++. ++.||+.-.. .+.++++++.+ ..-..+... ... .-..+++ .++.||+.-
T Consensus 33 ~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~----------~~~--~p~glavd~~~~~ly~~d 95 (316)
T 1ijq_A 33 VALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISR----------DIQ--APDGLAVDWIHSNIYWTD 95 (316)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECS----------SCS--CCCEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeC----------CCC--CcCEEEEeecCCeEEEEE
Confidence 455554 4789988642 35789999876 222222110 011 1133444 378999873
Q ss_pred ccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeec
Q 009910 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (522)
Q Consensus 164 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 241 (522)
.. ...+.++|+....-..+.. ..+..+ ..+++. ++.||+..-. ....++++++....-+.+..
T Consensus 96 ~~------~~~I~~~~~~g~~~~~~~~-~~~~~P---~~iavdp~~g~ly~~d~~-----~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 96 SV------LGTVSVADTKGVKRKTLFR-ENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp TT------TTEEEEEETTSSSEEEEEE-CTTCCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCCEEEEEC
T ss_pred CC------CCEEEEEeCCCCceEEEEE-CCCCCc---ceEEeCCCCCEEEEEccC-----CCCeEEEEcCCCCCeEEEEE
Confidence 22 2358899988665443332 122222 234443 6889987421 12569999987554333321
Q ss_pred CCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCC
Q 009910 242 TGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (522)
Q Consensus 242 ~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~ 320 (522)
..+..| ...++- .++.||+.-.. .+.|+++|++...-+.+.... .....-.++++.++.+|+.--..
T Consensus 161 -~~~~~P---~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~--~~~~~P~giav~~~~ly~~d~~~- 228 (316)
T 1ijq_A 161 -ENIQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDE--KRLAHPFSLAVFEDKVFWTDIIN- 228 (316)
T ss_dssp -SSCSCE---EEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECT--TTTSSEEEEEEETTEEEEEETTT-
T ss_pred -CCCCCc---eEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEeecC--CccCCcEEEEEECCEEEEEECCC-
Confidence 111111 233333 35568886432 357999999765444443321 11122245555688999876322
Q ss_pred CCCcCeEEEEECCCCc
Q 009910 321 KKRHAETLIFDILKGE 336 (522)
Q Consensus 321 ~~~~~~v~~yd~~~~~ 336 (522)
..|.++|+.+.+
T Consensus 229 ----~~V~~~~~~~g~ 240 (316)
T 1ijq_A 229 ----EAIFSANRLTGS 240 (316)
T ss_dssp ----TEEEEEETTTCC
T ss_pred ----CeEEEEeCCCCc
Confidence 458899986544
No 288
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=51.49 E-value=1.7e+02 Score=31.03 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=52.6
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCCcce--EEEEECCEEEEEcccCCC---CCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 009910 174 SVWTFDTETECWSVVEAKGDIPVARSGH--TVVRASSVLILFGGEDGK---RRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 248 (522)
.++.||+.+++=..+-.......-.... -...-+++.++++..... .....++++||+.+.+-..+. ..+.
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~---~~~~- 112 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE---RIPN- 112 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS---CCCT-
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc---cCCC-
Confidence 5999999998755442211111100001 111224555555543211 122467899999998765553 2221
Q ss_pred CcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeee
Q 009910 249 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 249 r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 292 (522)
. ....+.. +++ .++|+- -++|+++|..++.-.++..
T Consensus 113 ~-~~~~~~SPdG~-~la~~~------~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 113 N-TQWVTWSPVGH-KLAYVW------NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp T-EEEEEECSSTT-CEEEEE------TTEEEEESSTTSCCEECCS
T ss_pred c-ceeeEECCCCC-EEEEEE------CCeEEEEECCCCceEEEcC
Confidence 1 2222222 344 334431 1468888877766555543
No 289
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=50.01 E-value=1.8e+02 Score=27.73 Aligned_cols=218 Identities=9% Similarity=-0.030 Sum_probs=116.7
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeec
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 191 (522)
+.+.++++.....+.+... . ..-.+++.. ++.||+.--. ...++++++.....+.+...
T Consensus 53 ~~I~~i~~~g~~~~~~~~~-----------~--~~~~~l~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN-----------L--ENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEEECTTSCCEEEEECS-----------C--SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECS
T ss_pred cceEEEeCCCCeeEEeecC-----------C--CceEEEEEeccccEEEEEecc------CCceEEEecCCCCceEEEeC
Confidence 4678888887766655431 1 112333333 5889987321 23599999988766555321
Q ss_pred CCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEcCC
Q 009910 192 GDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (522)
Q Consensus 192 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~GG~ 268 (522)
.+..+ ..+++ .++.||+.-. ..+.+++++++...-+.+.. ..+..|+ ..++- .++.||+.--.
T Consensus 114 -~~~~p---~glavd~~~g~ly~~d~------~~~~I~~~~~dG~~~~~l~~-~~l~~P~---~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 114 -GLESP---GGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLW-QSLEKPR---AIALHPMEGTIYWTDWG 179 (349)
T ss_dssp -SCSCC---CEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEEC-TTCSCEE---EEEEETTTTEEEEEECS
T ss_pred -CCCCc---cEEEEecCCCeEEEEcC------CCCeEEEEcCCCCceEEEEe-CCCCCcc---eEEEecCcCeEEEeccC
Confidence 12222 23444 3689998732 23568999987654343321 1233332 23333 24557876422
Q ss_pred CCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCC
Q 009910 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (522)
Q Consensus 269 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 346 (522)
. ...|++++++...-+.+... .. ..-.+.++- +++||+.-... ..|+++|++...-+.+.....
T Consensus 180 ~----~~~I~r~~~dG~~~~~~~~~---~~-~~PnGla~d~~~~~lY~aD~~~-----~~I~~~~~dG~~~~~~~~~~~- 245 (349)
T 3v64_C 180 N----TPRIEASSMDGSGRRIIADT---HL-FWPNGLTIDYAGRRMYWVDAKH-----HVIERANLDGSHRKAVISQGL- 245 (349)
T ss_dssp S----SCEEEEEETTSCSCEESCCS---SC-SCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSC-
T ss_pred C----CCEEEEEeCCCCCcEEEEEC---CC-CCcceEEEeCCCCEEEEEECCC-----CEEEEEeCCCCceEEEEeCCC-
Confidence 1 35799999876544443221 11 111233332 68999985432 569999987654344332111
Q ss_pred CCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 347 ~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
..-+++++. .+.||+.--. .+.|.+++..+.+
T Consensus 246 ----~~P~giav~----~~~ly~td~~----~~~V~~~~~~~G~ 277 (349)
T 3v64_C 246 ----PHPFAITVF----EDSLYWTDWH----TKSINSANKFTGK 277 (349)
T ss_dssp ----SSEEEEEEE----TTEEEEEETT----TTEEEEEETTTCC
T ss_pred ----CCceEEEEE----CCEEEEecCC----CCeEEEEEccCCC
Confidence 112344442 2567776432 3468888754443
No 290
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=49.73 E-value=2e+02 Score=28.40 Aligned_cols=170 Identities=17% Similarity=0.202 Sum_probs=91.4
Q ss_pred CCccceEEEEECCEEEEEcccCCCCCCce-eEEEEECC----CCcE-EEeeecCCCCCCCcceEEEEECCEEEEEcccCC
Q 009910 145 PACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTE----TECW-SVVEAKGDIPVARSGHTVVRASSVLILFGGEDG 218 (522)
Q Consensus 145 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~v~~yd~~----t~~W-~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 218 (522)
+...-|+.+.+++.=|++|=.++.-.+.. -+..|... ...- +.++. .....-+..|+-.+++.||+.--...
T Consensus 282 ~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyYdgvLyLtTRgt~ 359 (670)
T 3ju4_A 282 SVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEPCIKYYDGVLYLITRGTR 359 (670)
T ss_dssp TCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEEEEEEETTEEEEEEEESC
T ss_pred ceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEecCcC
Confidence 44467999999988888876554333322 23333211 1112 22322 22233344566678999999854333
Q ss_pred CCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCC----------CCCC---CCcE--EEEE--
Q 009910 219 KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS----------KSKT---LNDL--YSLD-- 281 (522)
Q Consensus 219 ~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~----------~~~~---~~~v--~~yd-- 281 (522)
..+.-+.+.+-+..-..|..+........ ...-.+.+++. ||+||-.. ...+ .... .+.+
T Consensus 360 ~~~~GS~L~rs~d~Gq~w~slrfp~nvHh--tnlPFakvgD~-l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r~nv~ 436 (670)
T 3ju4_A 360 GDRLGSSLHRSRDIGQTWESLRFPHNVHH--TTLPFAKVGDD-LIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVN 436 (670)
T ss_dssp TTSCCCEEEEESSTTSSCEEEECTTCCCS--SCCCEEEETTE-EEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEEEETT
T ss_pred CCCCcceeeeecccCCchhheeccccccc--cCCCcceeCCE-EEEEeccccccccccCCCcccccccCCceEEEEeecc
Confidence 33455678888888899999863211111 11123566777 99998431 1111 1112 2233
Q ss_pred ---cCCCcEEEeeeC---CCCCCCccceEEEE-ECCEE-EEEcccC
Q 009910 282 ---FETMIWTRIKIR---GFHPSPRAGCCGVL-CGTKW-YIAGGGS 319 (522)
Q Consensus 282 ---~~~~~W~~~~~~---~~~p~~r~~~~~~~-~~~~i-yi~GG~~ 319 (522)
.+.-+|..+... |.....-.+.+.+. -++-| |||||.+
T Consensus 437 ~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd 482 (670)
T 3ju4_A 437 NWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 482 (670)
T ss_dssp TCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred cCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcc
Confidence 245568877762 32233334444444 47766 4889864
No 291
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=47.14 E-value=1.9e+02 Score=27.41 Aligned_cols=194 Identities=8% Similarity=-0.004 Sum_probs=105.1
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEcccCC
Q 009910 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTD 167 (522)
Q Consensus 92 ~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~ 167 (522)
.+.+.. ++.||+.--. .+.++++++.....+.+.... +..| .++++ .++.||+.-..
T Consensus 76 ~~l~~d~~~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~--------~~~p----~glavd~~~g~ly~~d~~-- 136 (349)
T 3v64_C 76 IALDFHHRRELVFWSDVT-----LDRILRANLNGSNVEEVVSTG--------LESP----GGLAVDWVHDKLYWTDSG-- 136 (349)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS--------CSCC----CEEEEETTTTEEEEEETT--
T ss_pred EEEEEeccccEEEEEecc-----CCceEEEecCCCCceEEEeCC--------CCCc----cEEEEecCCCeEEEEcCC--
Confidence 344443 4789887421 357899999877654443210 1111 23333 37899987432
Q ss_pred CCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCC
Q 009910 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (522)
Q Consensus 168 ~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 245 (522)
...++++++....-..+.. ..+..+ ..+++. ++.||+.--.. ...++++++....-+.+... .+
T Consensus 137 ----~~~I~~~~~dG~~~~~l~~-~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~-~~ 202 (349)
T 3v64_C 137 ----TSRIEVANLDGAHRKVLLW-QSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT-HL 202 (349)
T ss_dssp ----TTEEEEEETTSCSCEEEEC-TTCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCCS-SC
T ss_pred ----CCeEEEEcCCCCceEEEEe-CCCCCc---ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC-CC
Confidence 2358899988765444331 122222 234443 67899873211 35699999876544433211 11
Q ss_pred CCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCc
Q 009910 246 PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (522)
Q Consensus 246 p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~ 324 (522)
..| .+.++- .++.||+.-. ..+.|+++|+....-+.+...+ .. .-.++++.++.||+..-..
T Consensus 203 ~~P---nGla~d~~~~~lY~aD~-----~~~~I~~~~~dG~~~~~~~~~~-~~---~P~giav~~~~ly~td~~~----- 265 (349)
T 3v64_C 203 FWP---NGLTIDYAGRRMYWVDA-----KHHVIERANLDGSHRKAVISQG-LP---HPFAITVFEDSLYWTDWHT----- 265 (349)
T ss_dssp SCE---EEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCEEEECSS-CS---SEEEEEEETTEEEEEETTT-----
T ss_pred CCc---ceEEEeCCCCEEEEEEC-----CCCEEEEEeCCCCceEEEEeCC-CC---CceEEEEECCEEEEecCCC-----
Confidence 111 233333 3556888642 2357999998764433333221 11 2234555788999985433
Q ss_pred CeEEEEECCCC
Q 009910 325 AETLIFDILKG 335 (522)
Q Consensus 325 ~~v~~yd~~~~ 335 (522)
..|.++|..+.
T Consensus 266 ~~V~~~~~~~G 276 (349)
T 3v64_C 266 KSINSANKFTG 276 (349)
T ss_dssp TEEEEEETTTC
T ss_pred CeEEEEEccCC
Confidence 45888885444
No 292
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=46.84 E-value=1.1e+02 Score=32.17 Aligned_cols=154 Identities=14% Similarity=0.192 Sum_probs=75.3
Q ss_pred eEEEEECCEEEEEcccCCCCCCceeEEEEECCCC-cEEEeeec---CCCCCCCcceEEEE-ECCEEEEEcccCCCCCccC
Q 009910 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 150 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 224 (522)
-+++..++++|+|=|. .+|+++.... ........ ..+|. ....+... .++++|+|=| +
T Consensus 447 DAit~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG--------~ 509 (631)
T 1ck7_A 447 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG--------N 509 (631)
T ss_dssp SEEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET--------T
T ss_pred ceeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec--------C
Confidence 3556668899999664 2888876552 22222111 12342 23322222 2578999954 3
Q ss_pred cEEEEEcCC--CcE-EEeecCCCCCCCCcceEEEEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEE-----eeeCC
Q 009910 225 DLHMFDLKS--LTW-LPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKIRG 294 (522)
Q Consensus 225 ~v~~yd~~t--~~W-~~~~~~g~~p~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~~~ 294 (522)
..|+|+..+ ..+ ..+... .+|.....--|+.. .++.+|+|-| +..|+||..++.=.. +.. .
T Consensus 510 ~yWry~~~~l~~GYPk~Is~~-G~P~~~~~IDAAf~~~~~gktYFFkG-------~~ywryd~~~~~vd~gYPk~i~~-~ 580 (631)
T 1ck7_A 510 EYWIYSASTLERGYPKPLTSL-GLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIAD-A 580 (631)
T ss_dssp EEEEEETTEECTTCCEEGGGG-TCCTTCCCCCBCCCCTTTCEEEEEET-------TEEEEEETTTTEECTTCCEETTT-S
T ss_pred EEEEECCCccccCCCccchhc-CCCCCCCcceeEEEecCCCeEEEEEC-------CEEEEEcCCcccccCCCCcchHh-h
Confidence 478888521 001 111111 12221111112222 3345899876 369999976542110 100 0
Q ss_pred CCCCCccceEEEEEC--CEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 295 FHPSPRAGCCGVLCG--TKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 295 ~~p~~r~~~~~~~~~--~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
-+..+..-.+|.... +++|++-| +..|+||..+..
T Consensus 581 w~G~p~~iDAAf~~~~~g~~YFFkG-------~~Ywr~d~~~~~ 617 (631)
T 1ck7_A 581 WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 617 (631)
T ss_dssp CSSCCTTCCEEECCTTSCBCEEEET-------TEEECCBTTBTT
T ss_pred cCCCCCCCcEeEEEcCCCeEEEEEC-------CEEEEEeCccce
Confidence 001122223344333 78999877 347788876543
No 293
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=46.17 E-value=54 Score=37.21 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=77.7
Q ss_pred CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC--CCCCCCccceEEEEE---CCEEEEEcccCCCCC
Q 009910 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPSPRAGCCGVLC---GTKWYIAGGGSRKKR 323 (522)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~ 323 (522)
-.++++....+. + ++|.-........++.|+.....|..-... +.......+++++.. +...+|+|--. ...
T Consensus 334 q~GfSa~~t~d~-~-~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~-~~~ 410 (1095)
T 3k6s_A 334 QEGFSAVFTPDG-P-VLGAVGSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR-YQH 410 (1095)
T ss_dssp CTTSSEECCTTC-C-EEEESCSTTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT-GGG
T ss_pred cccccceecCCc-c-eEcccccCCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc-ccc
Confidence 345566666666 4 777554444456788887765444322211 111233445665542 33456666322 223
Q ss_pred cCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEee--CCccEEEEEcCCCC---CCCCcEEEEEccc
Q 009910 324 HAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQH--KEKDFLVAFGGIKK---EPSNQVEVLSIEK 388 (522)
Q Consensus 324 ~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~--~~~~~l~v~GG~~~---~~~~~v~~y~~~~ 388 (522)
...+++|......|+..............|+++++.+. ++..-|+++|.-.. .....|++|....
T Consensus 411 ~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~ 480 (1095)
T 3k6s_A 411 TGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPR 480 (1095)
T ss_dssp TCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCS
T ss_pred cceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCC
Confidence 46799999888889887665555556677888876543 23345666664321 2245688876543
No 294
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=45.76 E-value=1.6e+02 Score=26.20 Aligned_cols=197 Identities=9% Similarity=-0.037 Sum_probs=104.6
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCc
Q 009910 150 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 225 (522)
Q Consensus 150 ~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 225 (522)
+.++.. ++.||+.-.. ...+++||+.+..-..+... .+ ..-+.+++. ++.||+.-. ..+.
T Consensus 39 ~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~-~~---~~p~~ia~d~~~~~lyv~d~------~~~~ 102 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTIIRQ-DL---GSPEGIALDHLGRTIFWTDS------QLDR 102 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEECT-TC---CCEEEEEEETTTTEEEEEET------TTTE
T ss_pred EEEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEEEC-CC---CCccEEEEEecCCeEEEEEC------CCCE
Confidence 445554 5789987432 23599999987654433211 11 123445543 579998742 2356
Q ss_pred EEEEEcCCCcEEEeecCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceE
Q 009910 226 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (522)
Q Consensus 226 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~ 304 (522)
++++|+....-..+... .+..| ..+++.. ++.||+..... ..+.+++++++...-+.+... .. ..-.+
T Consensus 103 I~~~~~~g~~~~~~~~~-~~~~P---~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~---~~-~~P~g 171 (267)
T 1npe_A 103 IEVAKMDGTQRRVLFDT-GLVNP---RGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQD---NL-GLPNG 171 (267)
T ss_dssp EEEEETTSCSCEEEECS-SCSSE---EEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECT---TC-SCEEE
T ss_pred EEEEEcCCCCEEEEEEC-CCCCc---cEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEEC---CC-CCCcE
Confidence 89999876543333211 11122 2334443 45588865321 135788999875543333321 11 11223
Q ss_pred EEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEE
Q 009910 305 GVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 382 (522)
Q Consensus 305 ~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~ 382 (522)
.++- ++.||+.-... +.|+++|+....-..+.. ... .+ ++++ +. .+.||+.-.. .+.|.
T Consensus 172 ia~d~~~~~lyv~d~~~-----~~I~~~~~~g~~~~~~~~-~~~--~P---~gi~-~d---~~~lyva~~~----~~~v~ 232 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGT-----HRAECLNPAQPGRRKVLE-GLQ--YP---FAVT-SY---GKNLYYTDWK----TNSVI 232 (267)
T ss_dssp EEEETTTTEEEEEETTT-----TEEEEEETTEEEEEEEEE-CCC--SE---EEEE-EE---TTEEEEEETT----TTEEE
T ss_pred EEEcCCCCEEEEEECCC-----CEEEEEecCCCceEEEec-CCC--Cc---eEEE-Ee---CCEEEEEECC----CCeEE
Confidence 3333 57899876432 469999997654333321 111 11 2333 32 3568875432 34699
Q ss_pred EEEcccCCcc
Q 009910 383 VLSIEKNESS 392 (522)
Q Consensus 383 ~y~~~~~~w~ 392 (522)
++|+.+.+-.
T Consensus 233 ~~d~~~g~~~ 242 (267)
T 1npe_A 233 AMDLAISKEM 242 (267)
T ss_dssp EEETTTTEEE
T ss_pred EEeCCCCCce
Confidence 9999876543
No 295
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=45.31 E-value=1.9e+02 Score=26.65 Aligned_cols=150 Identities=9% Similarity=-0.041 Sum_probs=80.3
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEcCCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 234 (522)
++.||+.--. ...+++||+.... ..... .+ ..-+.++.. ++++|+...... ...+++||+.+.
T Consensus 42 ~g~lyv~d~~------~~~I~~~d~~g~~-~~~~~---~~--~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~~~g 105 (306)
T 2p4o_A 42 DGTIFVTNHE------VGEIVSITPDGNQ-QIHAT---VE--GKVSGLAFTSNGDLVATGWNAD----SIPVVSLVKSDG 105 (306)
T ss_dssp TSCEEEEETT------TTEEEEECTTCCE-EEEEE---CS--SEEEEEEECTTSCEEEEEECTT----SCEEEEEECTTS
T ss_pred CCCEEEEeCC------CCeEEEECCCCce-EEEEe---CC--CCceeEEEcCCCcEEEEeccCC----cceEEEEcCCCC
Confidence 5678887421 2358999988753 33222 22 123344443 567888642211 124888999888
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEe--eeCCC--CCCCc--cceEEEEE
Q 009910 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI--KIRGF--HPSPR--AGCCGVLC 308 (522)
Q Consensus 235 ~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~~~~--~p~~r--~~~~~~~~ 308 (522)
+.+.+. ..+..+.....+...+..+|+.-. ....+|++|+.+..-+.. ..... .+... ...+...-
T Consensus 106 ~~~~~~---~~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d 177 (306)
T 2p4o_A 106 TVETLL---TLPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 177 (306)
T ss_dssp CEEEEE---ECTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred eEEEEE---eCCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence 887765 334445444555556665777532 134799999876422111 11000 01111 11122223
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 309 GTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 309 ~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
++.||+.--. .+.|++||+..
T Consensus 178 g~~lyv~d~~-----~~~I~~~~~~~ 198 (306)
T 2p4o_A 178 GNFLYVSNTE-----KMLLLRIPVDS 198 (306)
T ss_dssp TTEEEEEETT-----TTEEEEEEBCT
T ss_pred CCEEEEEeCC-----CCEEEEEEeCC
Confidence 5688887532 25699999875
No 296
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=45.02 E-value=2.5e+02 Score=28.16 Aligned_cols=179 Identities=13% Similarity=0.009 Sum_probs=81.3
Q ss_pred CCEEEEEcCcCCCCCcccEEEEEcCCC----cEEEcc-cccccCCCCCCCCCCCccceEEEEE-CCEEEEEcccCCCCCC
Q 009910 98 GNKMIVVGGESGNGLLDDVQVLNFDRF----SWTAAS-SKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSD 171 (522)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 171 (522)
..++||-|..+ +.++++|..++ +-...- +..- . .+.....-|.+... ++ |||..-.+..+..
T Consensus 95 r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~-~-----~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 95 RRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEV-K-----KVSGYSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp SCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHH-H-----HHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred CCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhc-c-----cccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence 45677776543 78999999766 222211 0000 0 00001122333333 45 7774222223344
Q ss_pred ceeEEEEECCCCcEEEeeecCCCCCCCcceEEE-EE-CCEEEEEc---------ccCCCC---CccCcEEEEEcCCCcEE
Q 009910 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RA-SSVLILFG---------GEDGKR---RKLNDLHMFDLKSLTWL 237 (522)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-~~-~~~iyv~G---------G~~~~~---~~~~~v~~yd~~t~~W~ 237 (522)
...+..+|.+|.+-...-+.+..|.. ..+-.. .- .+.+|.-- |..... +..+.+.+||+.+.+-.
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 56799999998763322111112211 111121 12 34444431 222221 34678999999876432
Q ss_pred EeecCCCCCCC--CcceEEEEE--CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeee
Q 009910 238 PLHCTGTGPSP--RSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 238 ~~~~~g~~p~~--r~~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 292 (522)
..- .+... .-.+....+ +++.+||..-.+-....+.|++|..+.+.|+....
T Consensus 242 ~tI---~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 242 HSL---TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp EEE---ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred eEE---ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 211 11111 000111111 34556765442222234567766665688887664
No 297
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=43.50 E-value=3.1e+02 Score=28.66 Aligned_cols=153 Identities=8% Similarity=-0.068 Sum_probs=68.5
Q ss_pred ceeEEEEECCCCc---EEEeeecCCC-CCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEE----cCCCcEEEeec-
Q 009910 172 RVSVWTFDTETEC---WSVVEAKGDI-PVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFD----LKSLTWLPLHC- 241 (522)
Q Consensus 172 ~~~v~~yd~~t~~---W~~~~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd----~~t~~W~~~~~- 241 (522)
..+++.+|+.+++ |..+.....+ ........++. -++++++...... .....++++| +.+.++..+..
T Consensus 223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~--~~~~~l~~~d~~~~~~~g~~~~~~~~ 300 (719)
T 1z68_A 223 VVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV--QNVSVLSICDFREDWQTWDCPKTQEH 300 (719)
T ss_dssp EEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS--TTEEEEEEEEECSSSSSEECCGGGEE
T ss_pred eeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc--cCeEEEEEEcccCCCCCCceEEEEec
Confidence 3478899988865 2233210000 01111112222 2466666532211 1235799999 77665544321
Q ss_pred --CCCCCCCCcc-----eEEEEECCcEEEEE-cCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEECCEEE
Q 009910 242 --TGTGPSPRSN-----HVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWY 313 (522)
Q Consensus 242 --~g~~p~~r~~-----~~~~~~~~~~lyv~-GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iy 313 (522)
.+ ...... ..+..-+++.+++. ...++ ...++.+|+.+...+.+... ... .......-++.||
T Consensus 301 ~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g---~~~l~~~~~~~~~~~~lt~~---~~~-v~~~~~~d~~~i~ 371 (719)
T 1z68_A 301 IEES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKDG---YKHIHYIKDTVENAIQITSG---KWE-AINIFRVTQDSLF 371 (719)
T ss_dssp EEEC--SSSCSSSSSCCCCEECTTSSCEEEEEECTTS---CEEEEEESSCSTTCEECSCS---SSC-EEEEEEECSSEEE
T ss_pred cccc--CCceEccccCCccEECCCCCeEEEEEEccCC---ceEEEEEECCCCceEecccC---ceE-EEEEEEEeCCEEE
Confidence 00 011111 11222244434443 32222 35799999988776655431 111 1111222345666
Q ss_pred EEcccC-CCCCcCeEEEEECCCC
Q 009910 314 IAGGGS-RKKRHAETLIFDILKG 335 (522)
Q Consensus 314 i~GG~~-~~~~~~~v~~yd~~~~ 335 (522)
+.+... .......+|..+..+.
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSS
T ss_pred EEEecCCCCCceEEEEEEeCCCC
Confidence 655330 1123356888887554
No 298
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=42.26 E-value=26 Score=31.71 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeee---cCCCCCC------CcceEEEE--ECCEEEEEcccCCCCCccC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA---KGDIPVA------RSGHTVVR--ASSVLILFGGEDGKRRKLN 224 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~~~~p~~------r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 224 (522)
++++|+|-|. .+|+||..+++-..--| ....|.. ..-.++.. .++++|+|-| +
T Consensus 129 ~~k~yfFkG~--------~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg--------~ 192 (227)
T 3lp9_A 129 GKEVYLFKGD--------QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD--------D 192 (227)
T ss_dssp TTEEEEEETT--------EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET--------T
T ss_pred CCEEEEEECC--------EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC--------C
Confidence 6899999774 39999987664211000 0013321 12223333 3589999965 3
Q ss_pred cEEEEEcCCC
Q 009910 225 DLHMFDLKSL 234 (522)
Q Consensus 225 ~v~~yd~~t~ 234 (522)
.-|+||..+.
T Consensus 193 ~Ywr~d~~~~ 202 (227)
T 3lp9_A 193 HYARVKVTPX 202 (227)
T ss_dssp EEEEEECCSS
T ss_pred EEEEEECCcc
Confidence 4788998765
No 299
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=42.04 E-value=5.4 Score=39.11 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=30.6
Q ss_pred EEECCEEEEEcccCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEE
Q 009910 204 VRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD 281 (522)
Q Consensus 204 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 281 (522)
++.++.||+.+ .+ ..++.+|.++.+ |+.-. +.. ..+.+..++. +|+.++.+ ..++.+|
T Consensus 6 ~v~~~~v~~gs-~d------g~v~a~d~~tG~~~W~~~~--~~~-----~s~p~~~~g~-~~v~~s~d-----g~l~a~d 65 (369)
T 2hz6_A 6 TLPETLLFVST-LD------GSLHAVSKRTGSIKWTLKE--DPV-----LQVPTHVEEP-AFLPDPND-----GSLYTLG 65 (369)
T ss_dssp --CTTEEEEEE-TT------SEEEEEETTTCCEEEEEEC--CCS-----CCCC-----C-CEEECTTT-----CCEEEC-
T ss_pred eeeCCEEEEEc-CC------CEEEEEECCCCCEEEEecC--CCc-----eecceEcCCC-EEEEeCCC-----CEEEEEE
Confidence 34456666643 22 358999988764 76542 111 1122334555 77766443 3589999
Q ss_pred cCCC--cEEE
Q 009910 282 FETM--IWTR 289 (522)
Q Consensus 282 ~~~~--~W~~ 289 (522)
.+++ .|+.
T Consensus 66 ~~tG~~~w~~ 75 (369)
T 2hz6_A 66 SKNNEGLTKL 75 (369)
T ss_dssp ----CCSEEC
T ss_pred CCCCceeeee
Confidence 8654 4653
No 300
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=40.71 E-value=2.5e+02 Score=26.85 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=16.9
Q ss_pred EEEEEcccCCCCCcCeEEEEECCCCce
Q 009910 311 KWYIAGGGSRKKRHAETLIFDILKGEW 337 (522)
Q Consensus 311 ~iyi~GG~~~~~~~~~v~~yd~~~~~W 337 (522)
.+++.|+.++. +.+||+.+...
T Consensus 240 ~~l~s~~~dg~-----i~iwd~~~~~~ 261 (447)
T 3dw8_B 240 NTFVYSSSKGT-----IRLCDMRASAL 261 (447)
T ss_dssp TEEEEEETTSC-----EEEEETTTCSS
T ss_pred cEEEEEeCCCe-----EEEEECcCCcc
Confidence 68888887654 89999887663
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=40.12 E-value=2.6e+02 Score=26.78 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=79.5
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCc---EEEeecCCCCCCCCcceEE-EEE-CCcEEEEEcCCCCCCCCCcEEEEE
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLT---WLPLHCTGTGPSPRSNHVA-ALY-DDKNLLIFGGSSKSKTLNDLYSLD 281 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~~-~~~-~~~~lyv~GG~~~~~~~~~v~~yd 281 (522)
+|.+||.+-... ..|+++++.... |-.-. +.+..+.+... +.. ++..|++..+ . ..+++||
T Consensus 147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~~---~~~~~~~G~nGIv~~pdg~~Liv~~~-~-----g~L~~fD 212 (334)
T 2p9w_A 147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWES---GNGGQRPGYSGITFDPHSNKLIAFGG-P-----RALTAFD 212 (334)
T ss_dssp TSCEEEEEEESS-----CEEEEECTTSCCEEEEEECC---CCSSSCCSCSEEEEETTTTEEEEESS-S-----SSEEEEE
T ss_pred CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeecC---CCcccccCcceEEEeCCCCEEEEEcC-C-----CeEEEEc
Confidence 479999764321 459999997553 43221 22233444444 444 3555666654 2 4699999
Q ss_pred cCCCcEEEeeeC--CCCCCCccceE--EEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCC-CCCCcEE
Q 009910 282 FETMIWTRIKIR--GFHPSPRAGCC--GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT-SNKGFTL 356 (522)
Q Consensus 282 ~~~~~W~~~~~~--~~~p~~r~~~~--~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~-~r~~~~~ 356 (522)
+.+.....++.. |........-. ....+++++++.-.. +.++.+-...+ |+........... ...+++.
T Consensus 213 ~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~-----~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt 286 (334)
T 2p9w_A 213 VSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA-----PYAISFRSWDN-WKSANIKKTKRSELQNSGFTA 286 (334)
T ss_dssp CSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET-----TEEEEEECSST-TSEEEEEEEECGGGGSSCEEE
T ss_pred CCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC-----CCEEEEECCCC-cceeEEeeeecCccccCceeE
Confidence 875432112211 21101011111 223588886554432 22444443344 8765432211111 1345666
Q ss_pred EEEe-eCCccEEEEEcCCCCCC----CCcEEEEEcccC
Q 009910 357 VLVQ-HKEKDFLVAFGGIKKEP----SNQVEVLSIEKN 389 (522)
Q Consensus 357 ~~~~-~~~~~~l~v~GG~~~~~----~~~v~~y~~~~~ 389 (522)
+++. .+.++.||++-+.-.+. .....++|+...
T Consensus 287 ~t~~~~~~~~~iYvv~~~f~~~~~g~r~~f~~~di~~~ 324 (334)
T 2p9w_A 287 VADYYQGSEQGLYAVSAFFDNGAHGGRSDYPLYKLDNS 324 (334)
T ss_dssp EEEEEETTEEEEEEEECCGGGTTTSCCCCEEEEECCGG
T ss_pred EEEeccccCCeEEEEeeecCCcccCCcceeechhhhhh
Confidence 6551 12347799987653222 345566665443
No 302
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=39.57 E-value=2.2e+02 Score=25.90 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=69.5
Q ss_pred EECCEEEEEcccCCCCCCceeEEEEECC-CCcEEEeeecCCCCCCCcceEEEEE-CCEEEEEcccCCCCCccCcEEEEEc
Q 009910 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDL 231 (522)
Q Consensus 154 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 231 (522)
..++.||+.... ..+++||+. ...|..... ... ..+.+.. ++.||+. .. -..++.||+
T Consensus 105 ~~~~~l~v~t~~-------~~l~~~d~~g~~~~~~~~~-----~~~-~~~~~~~~~g~l~vg-t~------~~~l~~~d~ 164 (330)
T 3hxj_A 105 IFEDILYVTSMD-------GHLYAINTDGTEKWRFKTK-----KAI-YATPIVSEDGTIYVG-SN------DNYLYAINP 164 (330)
T ss_dssp EETTEEEEECTT-------SEEEEECTTSCEEEEEECS-----SCC-CSCCEECTTSCEEEE-CT------TSEEEEECT
T ss_pred EECCEEEEEecC-------CEEEEEcCCCCEEEEEcCC-----Cce-eeeeEEcCCCEEEEE-cC------CCEEEEECC
Confidence 348888874321 248999988 334655431 111 2223344 5677763 21 145899998
Q ss_pred CCC-cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCC-CcEEEeeeCCCCCCCccceEEEEE-
Q 009910 232 KSL-TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC- 308 (522)
Q Consensus 232 ~t~-~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~p~~r~~~~~~~~- 308 (522)
... .|.... +... ..+.+...+..+|+.. ..+++||... ..|+.... .. ...+.+..
T Consensus 165 ~g~~~~~~~~-----~~~~-~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~~-----~~-~~~~~~~~~ 224 (330)
T 3hxj_A 165 DGTEKWRFKT-----NDAI-TSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYAG-----YW-TVTRPAISE 224 (330)
T ss_dssp TSCEEEEEEC-----SSCC-CSCCEECTTCCEEEES--------SSEEEECTTSCEEEEECCS-----SC-CCSCCEECT
T ss_pred CCCEeEEEec-----CCCc-eeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEccC-----Cc-ceeceEECC
Confidence 722 255432 1111 1223333344366643 4689999442 34554321 11 11222333
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCCCc-eEE
Q 009910 309 GTKWYIAGGGSRKKRHAETLIFDILKGE-WSV 339 (522)
Q Consensus 309 ~~~iyi~GG~~~~~~~~~v~~yd~~~~~-W~~ 339 (522)
++.||+.. .. ..+++||+.... |+.
T Consensus 225 ~g~l~v~t-~~-----~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 225 DGTIYVTS-LD-----GHLYAINPDGTEKWRF 250 (330)
T ss_dssp TSCEEEEE-TT-----TEEEEECTTSCEEEEE
T ss_pred CCeEEEEc-CC-----CeEEEECCCCCEeEEe
Confidence 45777743 21 248888875544 543
No 303
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=39.14 E-value=3.9e+02 Score=28.62 Aligned_cols=216 Identities=13% Similarity=0.124 Sum_probs=102.5
Q ss_pred CEEEEEcCcCCC-CCcccEEEEEcCCCcEEEcccccccCCCCCCCCCCCc-cceEEEEE---CCEEEEEcccCCCCCCce
Q 009910 99 NKMIVVGGESGN-GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC-RGHSLISW---GKKVLLVGGKTDSGSDRV 173 (522)
Q Consensus 99 ~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~ 173 (522)
+.+|+..|.... .....+++=+-...+|+++..... .+...+.+ ....+++. .+.+|+.+-. .
T Consensus 88 ~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~-----~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~-------~ 155 (763)
T 3a0f_A 88 DRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVP-----MGANDMGRNGGERLAVNPHWTDELWFGSRT-------Q 155 (763)
T ss_dssp TCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSC-----CCTTSTTTTSBCCEEECTTSTTCEEEECSS-------S
T ss_pred CEEEEEecccccCCCCceEEEECCCCCCceeccCCcc-----cCccccCccccceEEECCCCCCEEEEEeCC-------C
Confidence 578887653211 112234433333569999863100 00001122 12334443 3677775421 2
Q ss_pred eEEEEECCCCcEEEeeecCCCCCCC---cceEEEEE----CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCC
Q 009910 174 SVWTFDTETECWSVVEAKGDIPVAR---SGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (522)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~~~~p~~r---~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p 246 (522)
.+++=+-.-.+|+++.. +|... .+.....+ .+.+|+...... .+++=+-.-.+|+.+. ..|
T Consensus 156 ~l~~S~DgG~TW~~~~~---~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g------~v~~S~DgG~tW~~~~---~~~ 223 (763)
T 3a0f_A 156 GLWRSTDRAQTWSRMNQ---LPDSSTYGIGIISVIFDPKNVGTAYVASHAVG------GLWVTWDGGANWSQVG---GQP 223 (763)
T ss_dssp CEEEESSTTSSCEECTT---SCCCSCTTTCEEEEEECSSSTTCEEEEESSTT------CEEEESSSSSSCEECT---TCC
T ss_pred cEEEECCCCcCcccccc---CcccCCCccceEEEEECCCCCCEEEEEEeCCC------eEEEECCCCCCccccC---CCc
Confidence 36554444568998863 44321 22222222 246777543211 2443333346899986 223
Q ss_pred --------------------CCCcceEEEEECCcEEEEEcCCCC---CCCCCcEEEEEcCCCcEEEeeeCCCCC------
Q 009910 247 --------------------SPRSNHVAALYDDKNLLIFGGSSK---SKTLNDLYSLDFETMIWTRIKIRGFHP------ 297 (522)
Q Consensus 247 --------------------~~r~~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~W~~~~~~~~~p------ 297 (522)
.+...+.++...+..+|+...... ......+++.+-...+|+.+...+..+
T Consensus 224 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~~~~~~~~~ 303 (763)
T 3a0f_A 224 TQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAP 303 (763)
T ss_dssp CSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCTTSSSSCEESCC
T ss_pred cccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCCCCCCCcccccc
Confidence 223334444433334777632100 112357899998899999986431100
Q ss_pred -----CCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 009910 298 -----SPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (522)
Q Consensus 298 -----~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (522)
.+..++..+.+ .+.||+.+.... ....+++=.-...+|+.+
T Consensus 304 ~~~~~~~~gg~~~i~v~~~~~v~~~~~~~~--~~~~l~~S~DgG~tW~~~ 351 (763)
T 3a0f_A 304 TGNKKVVPGGWNGISVGNGDTVVVSTLDAN--GEDSVYLSRDAGNSWKDL 351 (763)
T ss_dssp CCCTTSCCCEEEEEEECSTBCEEEEEESCT--TSCCEEEESBTTSSEEEH
T ss_pred ccccccccCCceeEEEcCCCeEEEEecCCC--CCCCEEEECCCCCCcccC
Confidence 00113333444 356776664211 123355544446789987
No 304
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=38.72 E-value=3.5e+02 Score=27.96 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=41.3
Q ss_pred EEEEEcccCCCCCccCcEEEEEcCC-----CcEEEeec-CCCCCCCCcceEEEEE-CCcEEEEEc-CCCCCCCCCcEEEE
Q 009910 209 VLILFGGEDGKRRKLNDLHMFDLKS-----LTWLPLHC-TGTGPSPRSNHVAALY-DDKNLLIFG-GSSKSKTLNDLYSL 280 (522)
Q Consensus 209 ~iyv~GG~~~~~~~~~~v~~yd~~t-----~~W~~~~~-~g~~p~~r~~~~~~~~-~~~~lyv~G-G~~~~~~~~~v~~y 280 (522)
+-+++||....+ ..++.+|+.. -.|+.-.. ...+.........+.+ +++.+.||| |++...-...++++
T Consensus 152 rtvLvggmg~GG---~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~ 228 (570)
T 3hx6_A 152 HTVLIGSLRAGG---KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLII 228 (570)
T ss_dssp EEEEEEECTTSC---SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEE
T ss_pred eEEEEEecCCCC---cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEE
Confidence 456777765543 3466666643 23655421 0123333333344444 345455665 66554445679999
Q ss_pred EcCCCc
Q 009910 281 DFETMI 286 (522)
Q Consensus 281 d~~~~~ 286 (522)
|.+++.
T Consensus 229 d~~tG~ 234 (570)
T 3hx6_A 229 DMETGA 234 (570)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 998875
No 305
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=38.40 E-value=4.3e+02 Score=28.89 Aligned_cols=196 Identities=8% Similarity=0.037 Sum_probs=91.7
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
++.+++.|+.+. .+..||..+.+-... .+....-.+++...+++++.|+.+ +.+.++|+.+.+
T Consensus 28 dg~~lAsgs~Dg------~I~lw~~~~~~~~~~-----~~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~~~~ 90 (902)
T 2oaj_A 28 TQNLLAIATVTG------EVHIYGQQQVEVVIK-----LEDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLYSQK 90 (902)
T ss_dssp TTTEEEEEETTS------EEEEECSTTCEEEEE-----CSSCCCEEEEEEETTTEEEEEETT------CEEEEEETTTCS
T ss_pred CCCEEEEEeCCC------EEEEEeCCCcEEEEE-----cCCCCCEEEEEEcCCCEEEEEECc------CeEEEEECCCCc
Confidence 456666666542 477777665543221 111111223333335555555543 348888988765
Q ss_pred EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCC-----CCCCCc--cceEEEEE
Q 009910 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-----FHPSPR--AGCCGVLC 308 (522)
Q Consensus 236 W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~-----~~p~~r--~~~~~~~~ 308 (522)
-...- ..+ ..-.+++...+...++.|+.++ .+..||+.+..-....... ..+... .-.+++..
T Consensus 91 ~~~~~---~~~--~~V~~v~~sp~g~~l~sgs~dg-----~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 91 VLTTV---FVP--GKITSIDTDASLDWMLIGLQNG-----SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEEE---ECS--SCEEEEECCTTCSEEEEEETTS-----CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEEE---cCC--CCEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 43221 111 1111222223332566665543 5899999877643221100 001111 11123333
Q ss_pred C--CEEEEEcccCCCCCcCeEEEEECCCCceEEeccCC--CCCCC---------C-CCCcEEEEEeeCCccEEEEEcCCC
Q 009910 309 G--TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP--SSSVT---------S-NKGFTLVLVQHKEKDFLVAFGGIK 374 (522)
Q Consensus 309 ~--~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~~~~---------~-r~~~~~~~~~~~~~~~l~v~GG~~ 374 (522)
. ..++++|+.++ .+ ++|+.+.+-...-... ...+. . ......+.+..+ +..++.|+.+
T Consensus 161 p~~~~~l~~g~~dg-----~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd--g~~lasgs~D 232 (902)
T 2oaj_A 161 PRDIGTVLISYEYV-----TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN--SLHIITIHED 232 (902)
T ss_dssp TTEEEEEEEECSSC-----EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT--SSEEEEEETT
T ss_pred cCCCCEEEEEeCCC-----cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC--CCEEEEEECC
Confidence 2 35666666543 37 9999887644322111 00000 0 011233444333 3467777765
Q ss_pred CCCCCcEEEEEcccCC
Q 009910 375 KEPSNQVEVLSIEKNE 390 (522)
Q Consensus 375 ~~~~~~v~~y~~~~~~ 390 (522)
+ .|.+||+.+.+
T Consensus 233 g----~i~lWd~~~g~ 244 (902)
T 2oaj_A 233 N----SLVFWDANSGH 244 (902)
T ss_dssp C----CEEEEETTTCC
T ss_pred C----eEEEEECCCCc
Confidence 4 58888886654
No 306
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=36.39 E-value=3.1e+02 Score=26.63 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=13.1
Q ss_pred cceEEEEECCcEEEEEcC
Q 009910 250 SNHVAALYDDKNLLIFGG 267 (522)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG 267 (522)
..|++++..+..+|..|-
T Consensus 338 ~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 338 WRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCCEEEecC
Confidence 467777776666999984
No 307
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=35.31 E-value=3.3e+02 Score=26.69 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=75.9
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-EC-CEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-AS-SVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
++.||+.--. ..+.++|+.+++.+.+.. ...+ -..+++ -+ +.||+....+.. ....+..++...
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~----~~~~-P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~g 214 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS----GLSK-VRTICWTHEADSMIITNDQNNN--DRPNNYILTRES 214 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC----CCSC-EEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGGG
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec----CCCC-cceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCCC
Confidence 4788887321 679999999998887753 1112 222333 23 458887543221 223466677543
Q ss_pred CcEE---EeecCCCCCCCCcceEEEEEC-CcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-
Q 009910 234 LTWL---PLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 308 (522)
Q Consensus 234 ~~W~---~~~~~g~~p~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~- 308 (522)
.|. .+. .+..| +.+++.. +..||+.--. .+.|++|++.+..-..+...+....|+ ..++.
T Consensus 215 -~~~~~~~l~---~~~~p---~giavdp~~g~lyv~d~~-----~~~V~~~~~~~~~~~~~~~~~~~~~P~---gia~~p 279 (430)
T 3tc9_A 215 -GFKVITELT---KGQNC---NGAETHPINGELYFNSWN-----AGQVFRYDFTTQETTPLFTIQDSGWEF---HIQFHP 279 (430)
T ss_dssp -TSCSEEEEE---ECSSC---CCEEECTTTCCEEEEETT-----TTEEEEEETTTTEEEEEEECSSSSCCE---EEEECT
T ss_pred -ceeeeeeec---cCCCc---eEEEEeCCCCEEEEEECC-----CCEEEEEECCCCcEEEEEEcCCCCcce---eEEEcC
Confidence 232 332 22222 3444543 4447775321 247999999877654444332111121 23332
Q ss_pred -CCEEEEEcccCCCCCcCeEEEEECC
Q 009910 309 -GTKWYIAGGGSRKKRHAETLIFDIL 333 (522)
Q Consensus 309 -~~~iyi~GG~~~~~~~~~v~~yd~~ 333 (522)
++.||+.--.. ..|++++..
T Consensus 280 dG~~lyv~d~~~-----~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQ-----HYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTT-----TEEEEEEEE
T ss_pred CCCEEEEEECCC-----CEEEEEeCC
Confidence 34599885432 458887654
No 308
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=34.99 E-value=4.1e+02 Score=27.62 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=58.4
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCC-CCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
+|+.++.++.++. +.+||.++ .+..+. ...+ ..+..++++...++.+++.||.++ .+..||+.++
T Consensus 96 dG~~LAs~s~dg~------V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DG-----tVkIWd~~~~ 161 (588)
T 2j04_A 96 IDDWMAVLSNNGN------VSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDG-----ELQFFSIRKN 161 (588)
T ss_dssp SSSCEEEEETTSC------EEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTS-----EEEEEECCCC
T ss_pred CCCEEEEEeCCCc------EEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCC-----EEEEEECCCC
Confidence 5677777765543 67777544 333333 1222 234455665555554777777654 5889998876
Q ss_pred c--------EEEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCc
Q 009910 286 I--------WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (522)
Q Consensus 286 ~--------W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~ 336 (522)
. ...+..... .....-.+.+...+. ++.++.+.. +..+|+.++.
T Consensus 162 ~l~~~~~i~l~ti~~~~~-gh~~~V~sVawSPdg-Laass~D~t-----VrlWd~~~~~ 213 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDA-GSKDWVTHIVWYEDV-LVAALSNNS-----VFSMTVSASS 213 (588)
T ss_dssp TTTCCCCEEEEEEECSCT-TCCCCEEEEEEETTE-EEEEETTCC-----EEEECCCSSS
T ss_pred ccccccceeeeeeecccc-cccccEEEEEEcCCc-EEEEeCCCe-----EEEEECCCCc
Confidence 3 233321100 011112233334555 677776543 8888887765
No 309
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=34.08 E-value=3e+02 Score=25.78 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCCCCCCCc-EEEEEcCCCcEEEeeeCCCCCCCccceEEEEE-CCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 258 DDKNLLIFGGSSKSKTLND-LYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
.+..+++.|+.++ . +.+||..+.+-...-..+. ....-.+++.. ++++++.|+.++ .+.+||+...
T Consensus 205 ~~g~~l~s~s~d~-----~~v~iwd~~~~~~~~~~~~g~--h~~~v~~~~~s~~~~~l~s~s~d~-----~v~iw~~~~~ 272 (355)
T 3vu4_A 205 RKSDMVATCSQDG-----TIIRVFKTEDGVLVREFRRGL--DRADVVDMKWSTDGSKLAVVSDKW-----TLHVFEIFND 272 (355)
T ss_dssp TTSSEEEEEETTC-----SEEEEEETTTCCEEEEEECTT--CCSCEEEEEECTTSCEEEEEETTC-----EEEEEESSCC
T ss_pred CCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEEcCC--CCCcEEEEEECCCCCEEEEEECCC-----EEEEEEccCC
Confidence 3333677776543 4 8899988764332221110 11111222222 567777777654 4888887653
No 310
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=32.79 E-value=3.1e+02 Score=25.63 Aligned_cols=60 Identities=8% Similarity=0.071 Sum_probs=32.6
Q ss_pred CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCC
Q 009910 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (522)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 285 (522)
.+.+.+.||.+ ..+.++|..+.+-...- ..+.+ ..++.+....+++.. -+.+.+||+.+.
T Consensus 70 ~~~~~~~~~~d------~~v~iWd~~~~~~~~~~---~~~~~---v~~v~~~~~~~~~~~-------~~~i~i~d~~~~ 129 (355)
T 3vu4_A 70 TNYVAFVTGVK------EVVHIWDDVKKQDVSRI---KVDAP---VKDLFLSREFIVVSY-------GDVISVFKFGNP 129 (355)
T ss_dssp SSEEEEECSST------TEEEEEETTTTEEEEEE---ECSSC---EEEEEECSSEEEEEE-------TTEEEEEESSTT
T ss_pred CCEEEEEECCc------cEEEEEECCCCcEEEEE---ECCCc---eEEEEEcCCEEEEEE-------cCEEEEEECCCC
Confidence 34566677643 26889999887643322 12221 223334444344432 135889998765
No 311
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=32.35 E-value=23 Score=21.65 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=10.8
Q ss_pred hHHHHHHHhhhcc
Q 009910 506 YLVLQAYINFMSQ 518 (522)
Q Consensus 506 ~~~~~~~~~~~~~ 518 (522)
|..|+.|||.+..
T Consensus 21 ~~~LrhYiNlvTR 33 (36)
T 2bf9_A 21 YNDLQQYLNVVTR 33 (36)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 6789999999864
No 312
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=32.05 E-value=4e+02 Score=26.69 Aligned_cols=213 Identities=15% Similarity=0.054 Sum_probs=98.5
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCC----cEEEeeecCCC----CCCCcceEEEE-ECCEEEEEcccCCCCCccCcE
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVVEAKGDI----PVARSGHTVVR-ASSVLILFGGEDGKRRKLNDL 226 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~~~~----p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v 226 (522)
.+++|+-|..+ +.++++|..++ +-.+.-...++ ...+ -|.+.. -++ |||----+..+...+.+
T Consensus 95 r~~l~v~~l~s------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 95 RRFLIVPGLRS------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR-LHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp SCEEEEEBTTT------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE-EEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred CCEEEEccCCC------CeEEEEECCCCCCCceeeeeechhhcccccCCCc-ccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 46677766543 45999999877 33222100001 1112 233333 345 77732111122345789
Q ss_pred EEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEEEc---------CCCCC----CCCCcEEEEEcCCCcEEEeee
Q 009910 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFG---------GSSKS----KTLNDLYSLDFETMIWTRIKI 292 (522)
Q Consensus 227 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv~G---------G~~~~----~~~~~v~~yd~~~~~W~~~~~ 292 (522)
.++|.++.+-...-..+..|... ....... +.+.+|+-- |.... ...+.|.+||..+++ .+..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~-~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~t 243 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYL-AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHS 243 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCC-CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEE
T ss_pred EEEECCCCeEEEEEccCCCCccc-cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeE
Confidence 99999987633322111222211 1112222 344333321 22221 346789999998763 3332
Q ss_pred CCCCCCCccceE----EEEE---CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccC--CCC-----CC-CC------C
Q 009910 293 RGFHPSPRAGCC----GVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS--PSS-----SV-TS------N 351 (522)
Q Consensus 293 ~~~~p~~r~~~~----~~~~---~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~-----~~-~~------r 351 (522)
. +.+..+.. ...+ +..+|+..-.+.....+.|++|..+..+|+..... +.. .+ .+ .
T Consensus 244 I---~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~ 320 (462)
T 2ece_A 244 L---TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVP 320 (462)
T ss_dssp E---ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEEC
T ss_pred E---ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCC
Confidence 2 12111111 1111 34677765523222335566555545778765532 110 00 00 1
Q ss_pred CCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcc
Q 009910 352 KGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (522)
Q Consensus 352 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~ 387 (522)
...+.+.+..++ .+||+-- ...++|.+||+.
T Consensus 321 ~~pa~I~lS~DG-rfLYVSn----rg~d~VavfdV~ 351 (462)
T 2ece_A 321 PLVTDIDISLDD-KFLYLSL----WGIGEVRQYDIS 351 (462)
T ss_dssp CCCCCEEECTTS-CEEEEEE----TTTTEEEEEECS
T ss_pred CceeEEEECCCC-CEEEEEe----CCCCEEEEEEec
Confidence 223444554444 5666532 124589999986
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=30.82 E-value=3.7e+02 Score=25.82 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=81.5
Q ss_pred CCEEEEEcccCCCC------CCceeEEEEECCC--CcEEEeeecCC-CC-CCCcceEEEEE---CC--EEEEEcccCCCC
Q 009910 156 GKKVLLVGGKTDSG------SDRVSVWTFDTET--ECWSVVEAKGD-IP-VARSGHTVVRA---SS--VLILFGGEDGKR 220 (522)
Q Consensus 156 ~~~iyv~GG~~~~~------~~~~~v~~yd~~t--~~W~~~~~~~~-~p-~~r~~~~~~~~---~~--~iyv~GG~~~~~ 220 (522)
++.+|+.-|.-.++ .....+++||+.+ .+-+++...+. .. ..-.-|.+... ++ +|||+--...
T Consensus 60 ~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~-- 137 (355)
T 3sre_A 60 NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS-- 137 (355)
T ss_dssp TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT--
T ss_pred CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC--
Confidence 45666665422211 1344699999883 45556654331 11 12234555543 23 6888744321
Q ss_pred CccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCC--CC----------CCCCCcEEEEEcCCCcEE
Q 009910 221 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS--SK----------SKTLNDLYSLDFETMIWT 288 (522)
Q Consensus 221 ~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~--~~----------~~~~~~v~~yd~~~~~W~ 288 (522)
.....++.+|+.+...+.+......+..+..-.++.-++. +|+-+.. .. ......+++||+. +.+
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE
Confidence 2234577777777766655432223333444344444444 7775431 11 1234578999984 444
Q ss_pred EeeeCCCCCCCccceEEEEE---CCEEEEEcccCCCCCcCeEEEEECCC
Q 009910 289 RIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILK 334 (522)
Q Consensus 289 ~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~~~v~~yd~~~ 334 (522)
.+... ......+.+ +..+|+.--.. ..|++|+...
T Consensus 215 ~~~~~------l~~pNGia~spDg~~lYvadt~~-----~~I~~~~~~~ 252 (355)
T 3sre_A 215 VVAEG------FDFANGINISPDGKYVYIAELLA-----HKIHVYEKHA 252 (355)
T ss_dssp EEEEE------ESSEEEEEECTTSSEEEEEEGGG-----TEEEEEEECT
T ss_pred EeecC------CcccCcceECCCCCEEEEEeCCC-----CeEEEEEECC
Confidence 44321 111122333 34788875433 4699999763
No 314
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=30.59 E-value=3.3e+02 Score=25.20 Aligned_cols=220 Identities=11% Similarity=0.061 Sum_probs=115.4
Q ss_pred ccEEEEEcCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEcccCCCCCCceeEEEEECCC----CcEEE
Q 009910 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTET----ECWSV 187 (522)
Q Consensus 114 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~ 187 (522)
+++.++|+.+.....+.+. ...-++++.. ++.||+.-.. ...++++++.+ ..-+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-------------~~~p~g~~~d~~~~~ly~~D~~------~~~I~~~~~~g~~~~~~~~~ 70 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDT 70 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-------------CSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEE
T ss_pred CeEEEEECCCcceEehhcC-------------CCceEEEEEEeCCCEEEEEECC------CCcEEEEECCCCCCCcccEE
Confidence 5688899988766554321 1122444444 5789987432 23599999876 22222
Q ss_pred eeecCCCCCCCcceEEEE--ECCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCcceEEEEE-CCcEEEE
Q 009910 188 VEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 264 (522)
Q Consensus 188 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~lyv 264 (522)
+-. ..+..+ ..+++ .++.||+.-. ..+.++++|+....-..+.. ..+..|+ ..++- .++.||+
T Consensus 71 ~~~-~~~~~p---~glavd~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~~~-~~~~~P~---~iavdp~~g~ly~ 136 (316)
T 1ijq_A 71 VIS-RDIQAP---DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFR-ENGSKPR---AIVVDPVHGFMYW 136 (316)
T ss_dssp EEC-SSCSCC---CEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEE-CTTCCEE---EEEEETTTTEEEE
T ss_pred EEe-CCCCCc---CEEEEeecCCeEEEEEC------CCCEEEEEeCCCCceEEEEE-CCCCCcc---eEEeCCCCCEEEE
Confidence 221 112222 34444 4689999732 23568999987654333321 1222232 33343 3555887
Q ss_pred EcCCCCCCCCCcEEEEEcCCCcEEEeeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEEecc
Q 009910 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (522)
Q Consensus 265 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 342 (522)
..-.. ...|++++++...-+.+... .. ..-.+.++- +++||+.-... ..|+++|++...-+.+..
T Consensus 137 ~d~~~----~~~I~~~~~dG~~~~~~~~~---~~-~~P~gla~d~~~~~lY~~D~~~-----~~I~~~d~dg~~~~~~~~ 203 (316)
T 1ijq_A 137 TDWGT----PAKIKKGGLNGVDIYSLVTE---NI-QWPNGITLDLLSGRLYWVDSKL-----HSISSIDVNGGNRKTILE 203 (316)
T ss_dssp EECSS----SCEEEEEETTSCCEEEEECS---SC-SCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEEE
T ss_pred EccCC----CCeEEEEcCCCCCeEEEEEC---CC-CCceEEEEeccCCEEEEEECCC-----CeEEEEecCCCceEEEee
Confidence 64211 24799999876544444321 11 112233443 67999986432 469999997654444432
Q ss_pred CCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEcccCC
Q 009910 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (522)
Q Consensus 343 ~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~~~ 390 (522)
.+. ....-+++++ . .+.||+.--. .+.|.++++.+.+
T Consensus 204 ~~~---~~~~P~giav-~---~~~ly~~d~~----~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 204 DEK---RLAHPFSLAV-F---EDKVFWTDII----NEAIFSANRLTGS 240 (316)
T ss_dssp CTT---TTSSEEEEEE-E---TTEEEEEETT----TTEEEEEETTTCC
T ss_pred cCC---ccCCcEEEEE-E---CCEEEEEECC----CCeEEEEeCCCCc
Confidence 111 1112234444 2 2567765422 3478899886554
No 315
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=30.34 E-value=80 Score=33.11 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=73.3
Q ss_pred CcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCC--CCCCCccceEEEEE--C---CEEEEEcccCCC
Q 009910 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG--FHPSPRAGCCGVLC--G---TKWYIAGGGSRK 321 (522)
Q Consensus 249 r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~p~~r~~~~~~~~--~---~~iyi~GG~~~~ 321 (522)
-.++++...++ .+|+|.-........++.|+.....|....... .......++++++. + ..-+|+|.-..
T Consensus 166 q~G~Sa~~~~d--~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~- 242 (597)
T 3v4v_A 166 QAGISSFYTKD--LIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQH- 242 (597)
T ss_dssp CBTSSEEECSS--EEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETTG-
T ss_pred cCceeeEecCC--ceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecccc-
Confidence 34556655555 356774322222346889999888887543221 11124456666553 1 23466664321
Q ss_pred CCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCC--ccEEEEEcCCCC---CCCCcEEEEEc
Q 009910 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE--KDFLVAFGGIKK---EPSNQVEVLSI 386 (522)
Q Consensus 322 ~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~--~~~l~v~GG~~~---~~~~~v~~y~~ 386 (522)
.....+++|......|+............+.+.++++.+.++ ..-| ++|.-.. .....|++|--
T Consensus 243 ~~~G~V~v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~Dl-vVGap~~~~~~~~G~v~vy~~ 311 (597)
T 3v4v_A 243 EQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDL-LVGAPMQSTIREEGRVFVYIN 311 (597)
T ss_dssp GGTCEEEEEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEE-EEEETTCCSSSCCCEEEEEEE
T ss_pred cCCceEEEEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceE-EEEcccccCCCcCCeEEEEEE
Confidence 133678999877788987665444444566777777664333 2334 4543211 12456777743
No 316
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=29.54 E-value=4e+02 Score=25.81 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=12.9
Q ss_pred cceEEEEECCcEEEEEcC
Q 009910 250 SNHVAALYDDKNLLIFGG 267 (522)
Q Consensus 250 ~~~~~~~~~~~~lyv~GG 267 (522)
..|++++..+..+|.+|-
T Consensus 234 ~~ht~~l~~~G~v~~wG~ 251 (406)
T 4d9s_A 234 WRHTISVSYSGALYTYGW 251 (406)
T ss_dssp SSEEEEEETTCCEEEEEC
T ss_pred CCcEEEEcCCCCEEEeeC
Confidence 456777766666999984
No 317
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=28.81 E-value=29 Score=21.23 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.7
Q ss_pred hHHHHHHHhhhcc
Q 009910 506 YLVLQAYINFMSQ 518 (522)
Q Consensus 506 ~~~~~~~~~~~~~ 518 (522)
|..|+.|||.+..
T Consensus 21 ~~~Lr~YiNlvTR 33 (36)
T 1bba_A 21 AAELRRYINMLTR 33 (36)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhc
Confidence 6789999999864
No 318
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=28.18 E-value=5.7e+02 Score=27.18 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=58.6
Q ss_pred cCcEEEEEcCC--CcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCC-----CCCCCcEEEEEcCC--------CcE
Q 009910 223 LNDLHMFDLKS--LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-----SKTLNDLYSLDFET--------MIW 287 (522)
Q Consensus 223 ~~~v~~yd~~t--~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~-----~~~~~~v~~yd~~~--------~~W 287 (522)
.+.++..|... ..|.++. .|. ...-....++. +|+....+- ......+...|+.+ ..|
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~----~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 340 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKIN----MPS--DATLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSL 340 (711)
T ss_dssp CEEEEEEECSSSSCEEEECC----SCT--TCEEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTC
T ss_pred ceeEEEEcCCCCCCcceEee----cCC--cceEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccc
Confidence 47788888764 5687773 333 22123345665 888654331 12456799999764 469
Q ss_pred EEeeeCCCCCCCccceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceE
Q 009910 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (522)
Q Consensus 288 ~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~ 338 (522)
+.+-.. -..+.-......++.+|+..-.++ ...++++|+.++.|.
T Consensus 341 ~~~~~~---~~~~~l~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 341 KILFTP---TANEVFNFISTTKDRVFLATYDNV---VAKVVTFTLENEQWT 385 (711)
T ss_dssp EEEECC---CTTEEEEEEEECSSCEEEEEEETT---EEEEEEECEETTEEC
T ss_pred eEEECC---CCCCeEEEEEEECCEEEEEEEECC---EEEEEEEECCCCceE
Confidence 874331 112222233444677776543222 246888998888774
No 319
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=28.07 E-value=5.6e+02 Score=27.14 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=61.1
Q ss_pred EEEEEcCCCcEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCC----CCCCCcEEEEEcCCCcEEEeeeCCCC-CCCc
Q 009910 226 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK----SKTLNDLYSLDFETMIWTRIKIRGFH-PSPR 300 (522)
Q Consensus 226 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~~~~-p~~r 300 (522)
+++=.-.-.+|+.+. .+|.....|.++...+..+|+..+... ......+++++-...+|+.+...+.. +..+
T Consensus 224 v~~S~DgG~tW~~~~---~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~ 300 (737)
T 2cn3_A 224 IYRSTDGGVTWKAVP---GQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNR 300 (737)
T ss_dssp EEEESSTTSCCEECT---TCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCC
T ss_pred EEEEcCCCCceEECC---CCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccc
Confidence 443322346799986 555544444444433445777643211 11345799999999999998764211 0224
Q ss_pred cceEEEEE----CCEEEEEcccCCCCCcCeEEEEECCCCceEEe
Q 009910 301 AGCCGVLC----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (522)
Q Consensus 301 ~~~~~~~~----~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~ 340 (522)
++++.+.+ .+.||+.+.... .....+++-.-...+|+.+
T Consensus 301 ~~~~~i~v~p~~~~~ly~~~~~~~-~~~~~l~~S~DgG~tW~~~ 343 (737)
T 2cn3_A 301 FCFAGLAVDRQNPDIIMVTSMNAW-WPDEYIFRSTDGGATWKNI 343 (737)
T ss_dssp SEEEEEEECTTCTTCEEEEEECCC-SSCCCEEEESSTTSSCEES
T ss_pred cccccEEEcCCCCCEEEEEecccC-CCCccEEEeCCCCccccch
Confidence 45554444 357888765311 1112355544456788887
No 320
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=26.40 E-value=5.6e+02 Score=26.58 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=87.0
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE----CCEEEEEcccCC----C-------C
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDG----K-------R 220 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~----~-------~ 220 (522)
+..+||--. ....|.+.|+++.+-..+-. +|....-|.++.. .+++|+-+-... + .
T Consensus 101 G~~lfVnd~------~~~rVavIdl~t~~~~~ii~---ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 101 GRFLFMNDK------ANTRVARVRCDVMKCDAILE---IPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp EEEEEEEET------TTTEEEEEETTTTEEEEEEE---CSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred CCEEEEEcC------CCCEEEEEECCCceEeeEEe---CCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence 456777422 23459999999988666543 6766666776652 467777653211 1 1
Q ss_pred CccCcEEEEEcCCCc--EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCC----------------------------
Q 009910 221 RKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK---------------------------- 270 (522)
Q Consensus 221 ~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~---------------------------- 270 (522)
+..+.+-+.|.++.+ |+..- .+ -| ...++..+++.+|+.--.+.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~V-gg-~p----d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLV-SG-NL----DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEE-SS-CC----CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred ccCceEEEEECCCCeEEEEEEe-CC-Cc----cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 334568889998865 55432 11 11 23334445554554431110
Q ss_pred ----CCCCCcEEEEEcCCCcEEE-eeeCCCCCCCccceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 271 ----SKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 271 ----~~~~~~v~~yd~~~~~W~~-~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
....+.+-+.|..+...+. +... |.+..-|++..- +..+|+.+..+ +.+.+||.++.
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~I---pvg~~PhGv~~sPDGk~v~V~~~~s-----~~VsVid~~~~ 309 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYI---PIANNPHGCNMAPDKKHLCVAGKLS-----PTVTVLDVTRF 309 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEE---EEESSCCCEEECTTSSEEEEECTTS-----SBEEEEEGGGH
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEE---ecCCCceEEEEcCCCCEEEEeCCCC-----CeEEEEECccc
Confidence 1123568888887733222 1111 444455666554 44577766644 45999998865
No 321
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=25.49 E-value=4.2e+02 Score=24.74 Aligned_cols=165 Identities=8% Similarity=-0.057 Sum_probs=0.0
Q ss_pred eeEEEEECC-CCcEEEeeecCCCC-CCCcceEEEEECCEEEEEcccCCCCCccCcEEEEEcCCCc----EEEeecCCCCC
Q 009910 173 VSVWTFDTE-TECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCTGTGP 246 (522)
Q Consensus 173 ~~v~~yd~~-t~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~g~~p 246 (522)
+.+++||.. +++...+....... ...-.+.+..-+++.+++.+.... .-.++.+|..+.+ ...+. .+|
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~---~v~v~~~~~~~g~~~~~~~~~~---~~~ 240 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN---RICEYVIDPATHMPVYTHHSFP---LIP 240 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT---EEEEEEECTTTCCEEEEEEEEE---SSC
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC---eEEEEEEeCCCCcEEEccceEE---cCC
Q ss_pred CC------------CcceEE-EEECCcEEEEEcCCCCCCCCCcEEEEEcC-CCcEEEeee-CCCCCCCccceEEEE---E
Q 009910 247 SP------------RSNHVA-ALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKI-RGFHPSPRAGCCGVL---C 308 (522)
Q Consensus 247 ~~------------r~~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~-~~~~p~~r~~~~~~~---~ 308 (522)
.. .....+ ..-+++.||+..........+.+.+|++. +++.+.+.. .......-...+..- -
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCC
Q 009910 309 GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 348 (522)
Q Consensus 309 ~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 348 (522)
++.||+.+..++. +.+|+.+...-+.+...+.+.|
T Consensus 321 g~~l~v~~~~~~~-----v~v~~~~~~~l~~~~~~~~~~p 355 (365)
T 1jof_A 321 DEWMAITDDQEGW-----LEIYRWKDEFLHRVARVRIPEP 355 (365)
T ss_dssp TTEEEEECSSSCE-----EEEEEEETTEEEEEEEEECCST
T ss_pred CCEEEEEEcCCCe-----EEEEEEchhhCceeeEEEcCCC
No 322
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=25.43 E-value=25 Score=21.71 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=10.6
Q ss_pred hHHHHHHHhhhcc
Q 009910 506 YLVLQAYINFMSQ 518 (522)
Q Consensus 506 ~~~~~~~~~~~~~ 518 (522)
|..|+.|||.+..
T Consensus 21 ~~~Lr~YinlvTR 33 (37)
T 1f8p_A 21 YSALRHYINLITR 33 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 5789999999864
No 323
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=23.60 E-value=7.4e+02 Score=26.95 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=75.1
Q ss_pred CEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCCCc
Q 009910 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (522)
Q Consensus 157 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (522)
+++++.|+.+ ..+..+|+.+.+-...-. .+ .. -.+++. -++..++.|+.++ .+.+||+.+.+
T Consensus 69 g~~L~S~s~D------~~v~lWd~~~~~~~~~~~---~~-~~-V~~v~~sp~g~~l~sgs~dg------~V~lwd~~~~~ 131 (902)
T 2oaj_A 69 GIYLVVINAK------DTVYVLSLYSQKVLTTVF---VP-GK-ITSIDTDASLDWMLIGLQNG------SMIVYDIDRDQ 131 (902)
T ss_dssp TTEEEEEETT------CEEEEEETTTCSEEEEEE---CS-SC-EEEEECCTTCSEEEEEETTS------CEEEEETTTTE
T ss_pred CCEEEEEECc------CeEEEEECCCCcEEEEEc---CC-CC-EEEEEECCCCCEEEEEcCCC------cEEEEECCCCc
Confidence 4445555532 358888998876432211 11 11 111222 2456666666543 48889998776
Q ss_pred EEEeecC------CCC-CCCCcceEEEEECC-cEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCC---CCCC-----
Q 009910 236 WLPLHCT------GTG-PSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF---HPSP----- 299 (522)
Q Consensus 236 W~~~~~~------g~~-p~~r~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~p~~----- 299 (522)
-...... ..+ .....-.+++...+ ..+++.|+.+ ..+ .||+.+..-...-.... .|..
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d-----g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY-----VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS-----CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCC
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC-----CcE-EEECCCCceEEEEecccCCcCCCcccccc
Confidence 4322110 000 00011123333332 2366666544 247 99998775433221100 0100
Q ss_pred ----c-cceEEEEE--CCEEEEEcccCCCCCcCeEEEEECCCCceEE
Q 009910 300 ----R-AGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (522)
Q Consensus 300 ----r-~~~~~~~~--~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~ 339 (522)
+ ....++.+ +++.++.|+.++. +.+||+.+.+-..
T Consensus 206 ~~~~h~~~V~~v~fspdg~~lasgs~Dg~-----i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSLHIITIHEDNS-----LVFWDANSGHMIM 247 (902)
T ss_dssp TTSCBCCCEEEEEECTTSSEEEEEETTCC-----EEEEETTTCCEEE
T ss_pred cccccCCCeEEEEEcCCCCEEEEEECCCe-----EEEEECCCCcEEE
Confidence 0 11222333 6777888887654 8999998876543
No 324
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=22.52 E-value=5e+02 Score=24.57 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=36.2
Q ss_pred CCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCCCCCcEEEEEccc
Q 009910 309 GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (522)
Q Consensus 309 ~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~y~~~~ 388 (522)
++++++.||.+.. +.++|+.+..-..... . .......+.+. .+...+++.|+.++ .|.+||+.+
T Consensus 155 d~~~las~s~D~t-----v~~Wd~~~~~~~~~~~-~-----~~~~v~~v~~~-p~~~~~l~~~~~d~----~v~~wd~~t 218 (393)
T 4gq1_A 155 AEQVIASVGDDCT-----LIIWRLTDEGPILAGY-P-----LSSPGISVQFR-PSNPNQLIVGERNG----NIRIFDWTL 218 (393)
T ss_dssp EEEEEEEEETTSE-----EEEEEEETTEEEEEEE-E-----CSSCEEEEEEE-TTEEEEEEEEETTS----EEEEEETTC
T ss_pred CCCEEEEEECCCe-----EEEEECCCCceeeeec-C-----CCCCcEEEEEC-CCCCceEEecCCCC----EEEEEECCC
Confidence 5678888887654 7788876554221110 1 01111233333 23345677777653 588888876
Q ss_pred CC
Q 009910 389 NE 390 (522)
Q Consensus 389 ~~ 390 (522)
.+
T Consensus 219 ~~ 220 (393)
T 4gq1_A 219 NL 220 (393)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 325
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=21.74 E-value=5.4e+02 Score=24.73 Aligned_cols=195 Identities=12% Similarity=0.003 Sum_probs=102.9
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCcccEEEEEcCCC----cEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEc
Q 009910 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRF----SWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVG 163 (522)
Q Consensus 92 ~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~G 163 (522)
.++++. ++.||+.--. ...++++++... ....+... ... .-.++++ .++.||+.-
T Consensus 115 ~~l~~d~~~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~~~----------~~~--~p~glavD~~~~~lY~~d 177 (400)
T 3p5b_L 115 VALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISR----------DIQ--APDGLAVDWIHSNIYWTD 177 (400)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEEC------CCCEEEECS----------SCS--CEEEEEEETTTTEEEEEE
T ss_pred eEEeeeeccCceEEEecC-----CCeEEEEEcccCCCCCcceEEEeC----------CCC--CcccEEEEecCCceEEEE
Confidence 344444 5778887432 246788888752 12222210 011 1123343 378999984
Q ss_pred ccCCCCCCceeEEEEECCCCcEEEeeecCCCCCCCcceEEEEE--CCEEEEEcccCCCCCccCcEEEEEcCCCcEEEeec
Q 009910 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (522)
Q Consensus 164 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 241 (522)
.. ...++++++....-..+.. ..+..| ..+++. ++.||+.--. ....++++++....=+.+..
T Consensus 178 ~~------~~~I~~~~~~g~~~~~l~~-~~~~~P---~~iavdp~~g~ly~td~~-----~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 178 SV------LGTVSVADTKGVKRKTLFR-ENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp TT------TTEEEEECTTTCSEEEEEE-CSSCCE---EEEEEETTTTEEEEEECS-----SSCCEEEEETTSCSCEEEEC
T ss_pred CC------CCeEEEEeCCCCceEEEEe-CCCCCc---ceEEEecccCeEEEEeCC-----CCCEEEEEeCCCCccEEEEE
Confidence 32 2358899998776555442 122222 234443 5789886311 12469999987644333321
Q ss_pred CCCCCCCCcceEEEEE-CCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeC-CCCCCCccceEEEEECCEEEEEcccC
Q 009910 242 TGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCGVLCGTKWYIAGGGS 319 (522)
Q Consensus 242 ~g~~p~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~iyi~GG~~ 319 (522)
..+..| ...++- .++.||+.-. ..+.|+++|++...-+.+... ...+ ...++++.++.||+.--..
T Consensus 243 -~~l~~P---~glavd~~~~~lY~aD~-----~~~~I~~~d~dG~~~~~~~~~~~~l~---~P~gl~v~~~~lywtd~~~ 310 (400)
T 3p5b_L 243 -ENIQWP---NGITLDLLSGRLYWVDS-----KLHSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDIIN 310 (400)
T ss_dssp -SSCSCE---EEEEEETTTTEEEEEET-----TTTEEEEEETTSCCCEEEEECSSTTS---SEEEEEEETTEEEEEESSS
T ss_pred -CCCCce---EEEEEEeCCCEEEEEEC-----CCCEEEEEeCCCCccEEEEeCCCCCC---CCEEEEEeCCEEEEecCCC
Confidence 112111 123333 3556888732 246799999976544444332 1112 2345566789999986322
Q ss_pred CCCCcCeEEEEECCCC
Q 009910 320 RKKRHAETLIFDILKG 335 (522)
Q Consensus 320 ~~~~~~~v~~yd~~~~ 335 (522)
..|+++|..+.
T Consensus 311 -----~~V~~~~~~~G 321 (400)
T 3p5b_L 311 -----EAIFSANRLTG 321 (400)
T ss_dssp -----CSEEEEESSSC
T ss_pred -----CeEEEEEcCCC
Confidence 34889986554
No 326
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=21.50 E-value=2.9e+02 Score=29.05 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=54.3
Q ss_pred EEEEECCEEEEEcccCCCCCccCcEEEEEcCCC-cEEEeecC---CCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcE
Q 009910 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCT---GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (522)
Q Consensus 202 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~---g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v 277 (522)
+++..++++|+|=|. ..|+++.... ........ ..+|. ....+.....+..+|+|-| +..
T Consensus 448 Ait~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG-------~~y 511 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEY 511 (631)
T ss_dssp EEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-------TEE
T ss_pred eeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-------CEE
Confidence 455678899999552 3666655431 22221111 12332 2232222223344888866 368
Q ss_pred EEEEcCCC--cE-EEeeeCCCCCCCccceEEEE--ECCEEEEEcccCCCCCcCeEEEEECCCC
Q 009910 278 YSLDFETM--IW-TRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKG 335 (522)
Q Consensus 278 ~~yd~~~~--~W-~~~~~~~~~p~~r~~~~~~~--~~~~iyi~GG~~~~~~~~~v~~yd~~~~ 335 (522)
|+|+..+. .+ +.+...+.+..+..--+|.. .++++|+|-| +..|+||..+.
T Consensus 512 Wry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG-------~~ywryd~~~~ 567 (631)
T 1ck7_A 512 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKK 567 (631)
T ss_dssp EEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEET-------TEEEEEETTTT
T ss_pred EEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEEC-------CEEEEEcCCcc
Confidence 99985210 00 11111111111111122332 2689999987 46899998665
No 327
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=21.10 E-value=48 Score=20.95 Aligned_cols=14 Identities=29% Similarity=0.781 Sum_probs=11.3
Q ss_pred hHHHHHHHhhhccc
Q 009910 506 YLVLQAYINFMSQR 519 (522)
Q Consensus 506 ~~~~~~~~~~~~~~ 519 (522)
|..|+.|||.+...
T Consensus 25 ~~~Lr~YinlvTR~ 38 (41)
T 2l60_A 25 YASLRHYLNLVTRQ 38 (41)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccc
Confidence 57899999998743
No 328
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=20.36 E-value=7.3e+02 Score=25.69 Aligned_cols=181 Identities=15% Similarity=0.148 Sum_probs=89.9
Q ss_pred CCEEEEEcccCCCCCCceeEEEEECCCCcEEEeeecCCCC-CCCcceEEEE-ECCEEEEEcccCCCCCccCcEEEEEcCC
Q 009910 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (522)
Q Consensus 156 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t 233 (522)
+++.++.++.++ .|..+|..+ .+..+. ..++ ..+..++++. -++++++.||.++. +.+||+.+
T Consensus 96 dG~~LAs~s~dg------~V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DGt------VkIWd~~~ 160 (588)
T 2j04_A 96 IDDWMAVLSNNG------NVSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDGE------LQFFSIRK 160 (588)
T ss_dssp SSSCEEEEETTS------CEEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTSE------EEEEECCC
T ss_pred CCCEEEEEeCCC------cEEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCCE------EEEEECCC
Confidence 566666666543 266777544 444433 2233 2334555554 46788888887543 78899887
Q ss_pred Cc--------EEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCc----EEEeeeCCCCCCCcc
Q 009910 234 LT--------WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGFHPSPRA 301 (522)
Q Consensus 234 ~~--------W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~p~~r~ 301 (522)
+. ...+...... ..-.-.+.+...++ ++.++.+ +.+..+|+.++. |+.+... .. ..
T Consensus 161 ~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~D-----~tVrlWd~~~~~~~~~~~tL~~~---h~-~~ 228 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALSN-----NSVFSMTVSASSHQPVSRMIQNA---SR-RK 228 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEETT-----CCEEEECCCSSSSCCCEEEEECC---CS-SC
T ss_pred Cccccccceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeCC-----CeEEEEECCCCccccceeeeccc---cc-Cc
Confidence 63 2222100000 11122334445666 4445443 358888887655 3344211 11 11
Q ss_pred ceEEEEECCEEEEEcccCCCCCcCeEEEEECCCCceEEeccCCCCCCCCCCCcEEEEEeeCCccEEEEEcCCCCC
Q 009910 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (522)
Q Consensus 302 ~~~~~~~~~~iyi~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~r~~~~~~~~~~~~~~~l~v~GG~~~~ 376 (522)
-.+++..+ ..++.++ + ..|..||+.+..-..... ........+.+.+.....++++++.++.
T Consensus 229 V~svaFsg-~~LASa~-~-----~tIkLWd~~~~~~~~~~~------gh~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 229 ITDLKIVD-YKVVLTC-P-----GYVHKIDLKNYSISSLKT------GSLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp CCCEEEET-TEEEEEC-S-----SEEEEEETTTTEEEEEEC------SCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred EEEEEEEC-CEEEEEe-C-----CeEEEEECCCCeEEEEEc------CCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 12222334 4444444 2 469999998877644331 1112233445522234457777776543
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=20.15 E-value=1.5e+02 Score=28.49 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=49.1
Q ss_pred CcEEEEEcCCC--cEEEeecCCCCCCCCcceEEEEECCcEEEEEcCCCCCCCCCcEEEEEcCCCcEEEeeeCCC--CCCC
Q 009910 224 NDLHMFDLKSL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--HPSP 299 (522)
Q Consensus 224 ~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~p~~ 299 (522)
..++.+|.++. .|+.-.. ...|.-.....+...++. +|+..... -..++.||.+++.|..-...+. .-.|
T Consensus 20 G~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~-~~vv~p~~----dG~l~a~~~~~G~~~~~~~~~~lv~~SP 93 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYE-TLIIEPFG----DGNIYYFNAHQGLQKLPLSIRQLVSTSP 93 (339)
T ss_dssp SCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSE-EEEECCST----TTEEEEEETTTEEEEEEEEHHHHHTTCS
T ss_pred CeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCc-EEEEEECC----CCEEEEEECCCCcEEeeeccccceeccc
Confidence 34888888775 4876432 001110000000011233 66554221 1368999998877653322210 0111
Q ss_pred ccceEEEEE-------CCEEEEEcccCCCCCcCeEEEEECCCCc--eEE
Q 009910 300 RAGCCGVLC-------GTKWYIAGGGSRKKRHAETLIFDILKGE--WSV 339 (522)
Q Consensus 300 r~~~~~~~~-------~~~iyi~GG~~~~~~~~~v~~yd~~~~~--W~~ 339 (522)
..+.+..++ .+..+++|+.++ .++.+|+.+++ |+.
T Consensus 94 ~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g-----~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 94 LHLKTNIVVNDSGKIVEDEKVYTGSMRT-----IMYTINMLNGEIISAF 137 (339)
T ss_dssp EEEECC----------CCEEEEECEEEE-----EEEEEETTTCCEEEEE
T ss_pred cccCCCceeecccccccCCEEEEEecCC-----EEEEEECCCCcEEEEE
Confidence 111122222 555666676543 38888888764 554
Done!