BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009911
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 271 bits (693), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 142/324 (43%), Positives = 215/324 (66%), Gaps = 16/324 (4%)
Query: 201 GDSEDGKSKKKEYEGPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWM 260
G +E + + +P + ++ ++++ P V W+D+AG+ AK ++E VV P+
Sbjct: 47 GPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLR 106
Query: 261 PEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVR 320
P+ F G+R P KG+L+FGPPGTGKTL+ K +A++ G TFF++S+++L SKW GE E+MVR
Sbjct: 107 PDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVR 166
Query: 321 CLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSR 380
LF +AR P+ IFIDEIDSL + RG GEHESSRR+K+E LVQ+DG T ++ED
Sbjct: 167 ALFAVARCQQPAVIFIDEIDSLLSQRG-DGEHESSRRIKTEFLVQLDGA--TTSSEDR-- 221
Query: 381 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE--VSKDVDIDE 438
++V+ ATN P +IDEA RRRL KR+YIPLP +RK+++ INL + E + +I++
Sbjct: 222 --ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIV-INLMSKEQCCLSEEEIEQ 278
Query: 439 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALT 498
+ +++D +SG D+T +CR+ASL +R + +T D I ++ D++ P+A DFE A
Sbjct: 279 IVQQSDAFSGADMTQLCREASLGPIR---SLQTAD-IATITPDQVR--PIAYIDFENAFR 332
Query: 499 KVQRSVSQADIEKHEKWFQEFGSA 522
V+ SVS D+E +E W + FG
Sbjct: 333 TVRPSVSPKDLELYENWNKTFGCG 356
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 262 bits (669), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 213/353 (60%), Gaps = 44/353 (12%)
Query: 204 EDGKSKKKEYEGPDPD---LAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWM 260
E G E E DP+ L L+ ++ P V+W DVAGL AK L+EAV+LP+
Sbjct: 97 EKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKF 156
Query: 261 PEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-GTTFFNVSSATLASKWRGESERMV 319
P F G R PW+G+L+FGPPGTGK+ LAKAVATE +TFF++SS+ L SKW GESE++V
Sbjct: 157 PHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLV 216
Query: 320 RCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGS 379
+ LF LAR PS IFIDEIDSLC +R + E E++RR+K+E LVQ+ GV G + DG
Sbjct: 217 KNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGV---GVDNDG- 271
Query: 380 RKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438
++VL ATN PW +D A+RRR EKRIYIPLP +R + +++L + + S + D E
Sbjct: 272 ---ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQE 328
Query: 439 VARRTDGYSGDDLTNVCRDASLNGMR--------RKIAGKTRDEIKNMSKDEISK----D 486
+ R+TDGYSG D++ + RDA + +R +K+ G +R + + D ++ D
Sbjct: 329 LGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGD 388
Query: 487 P-------------------VAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520
P V+M D +L+ + +V++ D+ K +K+ ++FG
Sbjct: 389 PGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFG 441
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/321 (44%), Positives = 202/321 (62%), Gaps = 41/321 (12%)
Query: 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVA 292
P V+W DVAGL AK L+EAV+LP+ P F G R PW+G+L+FGPPGTGK+ LAKAVA
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66
Query: 293 TEC-GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351
TE +TFF++SS+ L SKW GESE++V+ LF LAR PS IFIDEIDSLC +R + E
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENE 125
Query: 352 HESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPL 411
E++RR+K+E LVQ+ GV G + DG ++VL ATN PW +D A+RRR EKRIYIPL
Sbjct: 126 SEAARRIKTEFLVQMQGV---GVDNDG----ILVLGATNIPWVLDSAIRRRFEKRIYIPL 178
Query: 412 PNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMR------ 464
P +R + K++L T + S + D E+ R+TDGYSG D++ + RDA + +R
Sbjct: 179 PEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238
Query: 465 --RKIAGKTRDEIKNMSKDEISK----DP-------------------VAMCDFEEALTK 499
+K+ G +R + ++ D ++ DP V+M D +L+
Sbjct: 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSN 298
Query: 500 VQRSVSQADIEKHEKWFQEFG 520
+ +V++ D+ K +K+ ++FG
Sbjct: 299 TKPTVNEHDLLKLKKFTEDFG 319
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 258 bits (658), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 202/312 (64%), Gaps = 16/312 (5%)
Query: 211 KEYEGPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRP 270
K + D +LA ++ ++++ V++DD+AG AK+ L+E V+LP PE F G+R P
Sbjct: 88 KNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAP 147
Query: 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYA 330
+G+L+FGPPG GKT+LAKAVA E TFFN+S+A+L SK+ GE E++VR LF +AR
Sbjct: 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQ 207
Query: 331 PSTIFIDEIDS-LCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAAT 389
PS IFID++DS LC R GEH++SRR+K+E L++ DGV + G + V+V+ AT
Sbjct: 208 PSIIFIDQVDSLLCERR--EGEHDASRRLKTEFLIEFDGVQSAGDDR------VLVMGAT 259
Query: 390 NFPWDIDEALRRRLEKRIYIPLPNFESR-KELIKINLKTVEVSKDVDIDEVARRTDGYSG 448
N P ++DEA+ RR KR+Y+ LPN E+R L + K ++ ++AR TDGYSG
Sbjct: 260 NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319
Query: 449 DDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQAD 508
DLT + +DA+L +R +++KNMS E+ + + DF E+L K++RSVS
Sbjct: 320 SDLTALAKDAALGPIRE----LKPEQVKNMSASEMRN--IRLSDFTESLKKIKRSVSPQT 373
Query: 509 IEKHEKWFQEFG 520
+E + +W ++FG
Sbjct: 374 LEAYIRWNKDFG 385
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 207/356 (58%), Gaps = 42/356 (11%)
Query: 198 SANGDSEDGKSKKKEYEGPD------PDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLE 251
SA S G K + EG D L L +L P V+W+DVAGL AK L+
Sbjct: 5 SAGSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALK 64
Query: 252 EAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311
EAV+LP+ P F+G R+P G+L++GPPGTGK+ LAKAVATE +TFF+VSS+ L SKW
Sbjct: 65 EAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124
Query: 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN 371
GESE++V+ LF +AR PS IFID++D+L RG GE E+SRR+K+ELLVQ++GV N
Sbjct: 125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN 183
Query: 372 TGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINL-KTVEV 430
V+VL ATN PW +D A+RRR E+RIYIPLP+ +R + +IN+ T V
Sbjct: 184 DSQG-------VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV 236
Query: 431 SKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTR--------DEIKNMS--- 479
D + T+GYSG D+ V +DA + + RKI T DE + ++
Sbjct: 237 LTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSATHFKDVSTEDDETRKLTPSS 295
Query: 480 ---------------KDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520
DE+ + + + DF +A+ + +V++ D+ K E++ ++FG
Sbjct: 296 PGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 251 bits (640), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 205/351 (58%), Gaps = 44/351 (12%)
Query: 197 DSANGDSEDGKSKKKEYEGPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVL 256
D G+ G+ KK L L +L P V+W+DVAGL AK L+EAV+L
Sbjct: 3 DPFTGEDNGGEDNKK--------LRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVIL 54
Query: 257 PLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESE 316
P+ P F+G R+P G+L++GPPGTGK+ LAKAVATE +TFF+VSS+ L SKW GESE
Sbjct: 55 PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 114
Query: 317 RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNE 376
++V+ LF +AR PS IFID++D+L RG GE E+SRR+K+ELLVQ++GV N
Sbjct: 115 KLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDSQG- 172
Query: 377 DGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINL-KTVEVSKDVD 435
V+VL ATN PW +D A+RRR E+RIYIPLP+ +R + +IN+ T V D
Sbjct: 173 ------VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED 226
Query: 436 IDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTR--------DEIKNMS-------- 479
+ T+GYSG D+ V +DA + + RKI T DE + ++
Sbjct: 227 YRTLGAMTEGYSGSDIAVVVKDALMQPI-RKIQSATHFKDVSTEDDETRKLTPCSPGDDG 285
Query: 480 ----------KDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520
DE+ + + + DF +A+ + +V++ D+ K E++ ++FG
Sbjct: 286 AIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 336
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 198/326 (60%), Gaps = 36/326 (11%)
Query: 222 AMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPG 281
++ R L P V+W+DVAGL AK L+EAV+LP+ P F+G R+P G+L++GPPG
Sbjct: 11 GLVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPG 70
Query: 282 TGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDS 341
TGK+ LAKAVATE +TFF+VSS+ L SKW GESE++V+ LF +AR PS IFIDE+D+
Sbjct: 71 TGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDA 130
Query: 342 LCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR 401
L RG GE E+SRR+K+ELLVQ++GV N V+VL ATN PW +D A+RR
Sbjct: 131 LTGTRG-EGESEASRRIKTELLVQMNGVGNDSQG-------VLVLGATNIPWQLDSAIRR 182
Query: 402 RLEKRIYIPLPNFESRKELIKINL-KTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASL 460
R E+RIYIPLP+ +R + +IN+ T V D + T+GYSG D+ V +DA +
Sbjct: 183 RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 242
Query: 461 NGMRRKIAGKTR--------DEIKNMS------------------KDEISKDPVAMCDFE 494
+ RKI T DE + ++ DE+ + + + DF
Sbjct: 243 QPI-RKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 301
Query: 495 EALTKVQRSVSQADIEKHEKWFQEFG 520
+A+ + +V++ D+ K E++ ++FG
Sbjct: 302 KAIKSTRPTVNEDDLLKQEQFTRDFG 327
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 196/320 (61%), Gaps = 36/320 (11%)
Query: 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLL 287
+L P V+W+DVAGL AK L+EAV+LP+ P F+G R+P G+L++GPPGTGK+ L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 288 AKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG 347
AKAVATE +TFF+VSS+ L SKW GESE++V+ LF +AR PS IFID++D+L RG
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 348 ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRI 407
GE E+SRR+K+ELLVQ++GV N V+VL ATN PW +D A+RRR E+RI
Sbjct: 128 -EGESEASRRIKTELLVQMNGVGNDSQG-------VLVLGATNIPWQLDSAIRRRFERRI 179
Query: 408 YIPLPNFESRKELIKINL-KTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRK 466
YIPLP+ +R + +IN+ T V D + T+GYSG D+ V +DA + + RK
Sbjct: 180 YIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI-RK 238
Query: 467 IAGKTR--------DEIKNMS------------------KDEISKDPVAMCDFEEALTKV 500
I T DE + ++ DE+ + + + DF +A+
Sbjct: 239 IQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKST 298
Query: 501 QRSVSQADIEKHEKWFQEFG 520
+ +V++ D+ K E++ ++FG
Sbjct: 299 RPTVNEDDLLKQEQFTRDFG 318
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 194/302 (64%), Gaps = 13/302 (4%)
Query: 220 LAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGP 279
L ++ +++E V W D+AG AK+ L+E V+LP PE F G+R P KG+L+FGP
Sbjct: 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62
Query: 280 PGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEI 339
PG GKTLLA+AVATEC TF N+S+A+L SK+ G+ E++VR LF +AR PS IFIDE+
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 340 DSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEAL 399
DS + +S EHE+SRR+K+E LV+ DG+ N DG R ++VLAATN P ++DEA
Sbjct: 123 DS-LLSERSSSEHEASRRLKTEFLVEFDGLPG---NPDGDR--IVVLAATNRPQELDEAA 176
Query: 400 RRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVD-IDEVARRTDGYSGDDLTNVCRDA 458
RR KR+Y+ LP+ ++R+ L+ L+ D + + +A+ TDGYSG DLT + +DA
Sbjct: 177 LRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDA 236
Query: 459 SLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQE 518
+L +R +++K + D + + DF +L +++RSV+ + +EKW Q+
Sbjct: 237 ALEPIRE----LNVEQVKCL--DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQD 290
Query: 519 FG 520
+G
Sbjct: 291 YG 292
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 176/310 (56%), Gaps = 32/310 (10%)
Query: 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGK 284
R+ + P V W+D+ GL + KR L+E V P+ P+ F P KGVL +GPPG GK
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
Query: 285 TLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCN 344
TLLAKA+A EC F ++ L + W GESE VR +FD AR AP +F DE+DS+
Sbjct: 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584
Query: 345 AR--GASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR- 401
AR ++ RV +++L ++DG++ ++K V ++ ATN P ID A+ R
Sbjct: 585 ARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGATNRPDIIDPAILRP 636
Query: 402 -RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASL 460
RL++ IYIPLP+ +SR ++K NL+ V+KDVD++ +A+ T+G+SG DLT +C+ A
Sbjct: 637 GRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC- 695
Query: 461 NGMRRKIAGKTRDEIKNMSKDEISKDPVAM-------------CDFEEALTKVQRSVSQA 507
K+A + E + + E +P AM FEEA+ +RSVS
Sbjct: 696 -----KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 750
Query: 508 DIEKHEKWFQ 517
DI K+E + Q
Sbjct: 751 DIRKYEMFAQ 760
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 146/236 (61%), Gaps = 12/236 (5%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVAT 293
V +DDV G + ++E V LPL P F+ I +P +G+L++GPPGTGKTL+A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 294 ECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHE 353
E G FF ++ + SK GESE +R F+ A AP+ IFIDE+D++ R + E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGE 319
Query: 354 SSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPL 411
RR+ S+LL +DG+ R V+V+AATN P ID ALRR R ++ + I +
Sbjct: 320 VERRIVSQLLTLMDGLKQ--------RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 412 PNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467
P+ R E+++I+ K ++++ DVD+++VA T G+ G DL +C +A+L +R+K+
Sbjct: 372 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 176/310 (56%), Gaps = 32/310 (10%)
Query: 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGK 284
R+ + P V W+D+ GL + KR L+E V P+ P+ F P KGVL +GPPG GK
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
Query: 285 TLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCN 344
TLLAKA+A EC F ++ L + W GESE VR +FD AR AP +F DE+DS+
Sbjct: 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584
Query: 345 AR--GASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR- 401
AR ++ RV +++L ++DG++ ++K V ++ ATN P ID A+ R
Sbjct: 585 ARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGATNRPDIIDPAILRP 636
Query: 402 -RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASL 460
RL++ IYIPLP+ +SR ++K NL+ V+KDVD++ +A+ T+G+SG DLT +C+ A
Sbjct: 637 GRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC- 695
Query: 461 NGMRRKIAGKTRDEIKNMSKDEISKDPVAM-------------CDFEEALTKVQRSVSQA 507
K+A + E + + E +P AM FEEA+ +RSVS
Sbjct: 696 -----KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 750
Query: 508 DIEKHEKWFQ 517
DI K+E + Q
Sbjct: 751 DIRKYEMFAQ 760
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 146/236 (61%), Gaps = 12/236 (5%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVAT 293
V +DD+ G + ++E V LPL P F+ I +P +G+L++GPPGTGKTL+A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 294 ECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHE 353
E G FF ++ + SK GESE +R F+ A AP+ IFIDE+D++ R + E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGE 319
Query: 354 SSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPL 411
RR+ S+LL +DG+ R V+V+AATN P ID ALRR R ++ + I +
Sbjct: 320 VERRIVSQLLTLMDGLKQ--------RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 412 PNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467
P+ R E+++I+ K ++++ DVD+++VA T G+ G DL +C +A+L +R+K+
Sbjct: 372 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 176/310 (56%), Gaps = 32/310 (10%)
Query: 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGK 284
R+ + P V W+D+ GL + KR L+E V P+ P+ F P KGVL +GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 285 TLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCN 344
TLLAKA+A EC F ++ L + W GESE VR +FD AR AP +F DE+DS+
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 345 AR--GASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR- 401
AR ++ RV +++L ++DG++ ++K V ++ ATN P ID A+ R
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGATNRPDIIDPAILRP 174
Query: 402 -RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASL 460
RL++ IYIPLP+ +SR ++K NL+ V+KDVD++ +A+ T+G+SG DLT +C+ A
Sbjct: 175 GRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC- 233
Query: 461 NGMRRKIAGKTRDEIKNMSKDEISKDPVAMC-------------DFEEALTKVQRSVSQA 507
K+A + E + + E +P AM FEEA+ +RSVS
Sbjct: 234 -----KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 288
Query: 508 DIEKHEKWFQ 517
DI K+E + Q
Sbjct: 289 DIRKYEMFAQ 298
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 156/274 (56%), Gaps = 31/274 (11%)
Query: 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAV 291
P VR++D+ GL + + + E V LPL PE F+ + P KG+L++GPPGTGKTLLAKAV
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 292 ATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNAR--GAS 349
ATE TF V + L K+ GE +V+ +F LA+ APS IFIDEID++ R +
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131
Query: 350 GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRI 407
G +R +LL ++DG + G V ++ ATN P +D A+ R R ++ I
Sbjct: 132 GGDREVQRTLMQLLAEMDGFDARGD--------VKIIGATNRPDILDPAILRPGRFDRII 183
Query: 408 YIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467
+P P+ + R E++KI+ + + +++DV+++E+A+ T+G G +L +C +A +N +R
Sbjct: 184 EVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE-- 241
Query: 468 AGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501
+D V M DF +A+ K+
Sbjct: 242 ----------------LRDYVTMDDFRKAVEKIM 259
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 146/236 (61%), Gaps = 12/236 (5%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVAT 293
V +DDV G + ++E V LPL P F+ I +P +G+L++GPPGTGKTL+A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 294 ECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHE 353
E G FF ++ + SK GESE +R F+ A AP+ IFIDE+D++ R + E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGE 319
Query: 354 SSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPL 411
RR+ S+LL +DG+ R V+V+AATN P ID ALRR R ++ + I +
Sbjct: 320 VERRIVSQLLTLMDGLKQ--------RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 412 PNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467
P+ R E+++I+ K ++++ DVD+++VA T G+ G DL +C +A+L +R+K+
Sbjct: 372 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 146/236 (61%), Gaps = 12/236 (5%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVAT 293
V +DD+ G + ++E V LPL P F+ I +P +G+L++GPPGTGKTL+A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 294 ECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHE 353
E G FF ++ + SK GESE +R F+ A AP+ IFIDE+D++ R + E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGE 319
Query: 354 SSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPL 411
RR+ S+LL +DG+ R V+V+AATN P ID ALRR R ++ + I +
Sbjct: 320 VERRIVSQLLTLMDGLKQ--------RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 412 PNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467
P+ R E+++I+ K ++++ DVD+++VA T G+ G DL +C +A+L +R+K+
Sbjct: 372 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 146/236 (61%), Gaps = 12/236 (5%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVAT 293
V +DD+ G + ++E V LPL P F+ I +P +G+L++GPPGTGKTL+A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 294 ECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHE 353
E G FF ++ + SK GESE +R F+ A AP+ IFIDE+D++ R + E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGE 319
Query: 354 SSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPL 411
RR+ S+LL +DG+ R V+V+AATN P ID ALRR R ++ + I +
Sbjct: 320 VERRIVSQLLTLMDGLKQ--------RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 412 PNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467
P+ R E+++I+ K ++++ DVD+++VA T G+ G DL +C +A+L +R+K+
Sbjct: 372 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 146/236 (61%), Gaps = 12/236 (5%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVAT 293
V +DD+ G + ++E V LPL P F+ I +P +G+L++GPPGTGKTL+A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 294 ECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHE 353
E G FF ++ + SK GESE +R F+ A AP+ IFIDE+D++ R + E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGE 319
Query: 354 SSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPL 411
RR+ S+LL +DG+ R V+V+AATN P ID ALRR R ++ + I +
Sbjct: 320 VERRIVSQLLTLMDGLKQ--------RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 412 PNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467
P+ R E+++I+ K ++++ DVD+++VA T G+ G DL +C +A+L +R+K+
Sbjct: 372 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 154/256 (60%), Gaps = 19/256 (7%)
Query: 217 DPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGV 274
DP ++ M+ +E P +D V GLT+ + ++E + LP+ PE F+ GI +P KGV
Sbjct: 131 DPLVSLMM----VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGV 185
Query: 275 LMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTI 334
+++GPPGTGKTLLA+AVA F VS A L K+ GE RMVR LF +AR +APS I
Sbjct: 186 ILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSII 245
Query: 335 FIDEIDSLCNAR--GASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP 392
F+DEIDS+ + R G+ G +R ELL Q+DG + K + ++ ATN
Sbjct: 246 FMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--------KNIKIIMATNRL 297
Query: 393 WDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDD 450
+D AL R R++++I P P+ +R E+++I+ + + +++ +++ +VA + +G SG D
Sbjct: 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGAD 357
Query: 451 LTNVCRDASLNGMRRK 466
+ VC +A + +R +
Sbjct: 358 VKGVCTEAGMYALRER 373
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 17/237 (7%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAKAVA 292
+ +D + GLTE R L E + LPL PE FQ GI+ P KGVL++GPPGTGKTLLAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-PPKGVLLYGPPGTGKTLLAKAVA 236
Query: 293 TECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNAR---GAS 349
G F ++ + K+ GES R++R +F A+ + P IF+DE+D++ R G S
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 350 GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRI 407
+ E R + ELL Q+DG +N G KI+M ATN P +D AL R RL++++
Sbjct: 297 ADREIQRTL-MELLTQMDGFDNLGQT-----KIIM---ATNRPDTLDPALLRPGRLDRKV 347
Query: 408 YIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMR 464
IPLPN R E+ KI+ V+ + + D + + +DG++G D+ N +A +R
Sbjct: 348 EIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 163/287 (56%), Gaps = 26/287 (9%)
Query: 231 TSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLA 288
T P V W D+ L + + L A++ P+ P+ F+ G+ P GVL+ GPPG GKTLLA
Sbjct: 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLA 61
Query: 289 KAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA 348
KAVA E G F +V L + + GESER VR +F A+ AP IF DE+D+LC R +
Sbjct: 62 KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALC-PRRS 120
Query: 349 SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKR 406
E +S RV ++LL ++DG+ +R+ V ++AATN P ID A+ R RL+K
Sbjct: 121 DRETGASVRVVNQLLTEMDGLE--------ARQQVFIMAATNRPDIIDPAILRPGRLDKT 172
Query: 407 IYIPLPNFESRKELIKINLKT---VEVSKDVDIDEVA--RRTDGYSGDDLTNVCRDASLN 461
+++ LP R ++K K + DV+++ +A R D Y+G DL+ + R+AS+
Sbjct: 173 LFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASIC 232
Query: 462 GMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQAD 508
+R+++A + S +E + V+ FEEA KV+ S+S+ D
Sbjct: 233 ALRQEMA-------RQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 164/299 (54%), Gaps = 39/299 (13%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAKAVA 292
V + DV G EA L+E V L P F G R P KG+L+ GPPGTGKTLLA+AVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTLLARAVA 70
Query: 293 TECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA--SG 350
E FF++S + + G VR LF A+A+AP +FIDEID++ RGA G
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130
Query: 351 EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIY 408
H+ + ++LLV++DG + S++ ++V+AATN P +D AL R R +K+I
Sbjct: 131 GHDEREQTLNQLLVEMDGFD--------SKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 409 IPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIA 468
+ P+ RK++++I+ + +++DV+++ +A+RT G+ G DL N+ +A+L R
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE--- 239
Query: 469 GKTRDEIKNMSKDEISKDPVAMCDFEEALTKV-----QRSVSQADIEKHEKWFQEFGSA 522
+D + M DFEEA+ +V ++S+ + EK + E G A
Sbjct: 240 ---------------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHA 283
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 141/235 (60%), Gaps = 16/235 (6%)
Query: 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAKA 290
P VR+ D+AG EAK + E V L PE + G + P KGVL+ GPPGTGKTLLAKA
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKA 63
Query: 291 VATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG 350
VA E FF++ ++ + G VR LF+ A+ APS IFIDEID++ +R A G
Sbjct: 64 VAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG 123
Query: 351 ---EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEK 405
++ + ++LL ++DG + V+VLAATN P +D AL R R ++
Sbjct: 124 VVSGNDEREQTLNQLLAEMDGFGSENAP-------VIVLAATNRPEILDPALMRPGRFDR 176
Query: 406 RIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASL 460
++ + P+F R E++K+++K V+++ DV++ EVA+ T G +G DL N+ +A+L
Sbjct: 177 QVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAAL 231
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 156/274 (56%), Gaps = 26/274 (9%)
Query: 223 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPP 280
ML D ++T+ + DVAG EAK + E V L P FQ G + P KGVLM GPP
Sbjct: 1 MLTEDQIKTT----FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPP 54
Query: 281 GTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEID 340
GTGKTLLAKA+A E FF +S + + G VR +F+ A+ AP IFIDEID
Sbjct: 55 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEID 114
Query: 341 SLCNARGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEA 398
++ RGA G H+ + +++LV++DG NE ++V+AATN P +D A
Sbjct: 115 AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG---NEG-----IIVIAATNRPDVLDPA 166
Query: 399 LRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCR 456
L R R ++++ + LP+ R++++K++++ V ++ D+D +AR T G+SG DL N+
Sbjct: 167 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226
Query: 457 DASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAM 490
+A+L A + + +M + E +KD + M
Sbjct: 227 EAAL------FAARGNKRVVSMVEFEKAKDKIMM 254
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 163/299 (54%), Gaps = 39/299 (13%)
Query: 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAKAVA 292
V + DV G EA L+E V L P F G R P KG+L+ GPPGTG TLLA+AVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATLLARAVA 70
Query: 293 TECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA--SG 350
E FF++S + + G VR LF A+A+AP +FIDEID++ RGA G
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130
Query: 351 EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIY 408
H+ + ++LLV++DG + S++ ++V+AATN P +D AL R R +K+I
Sbjct: 131 GHDEREQTLNQLLVEMDGFD--------SKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 409 IPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIA 468
+ P+ RK++++I+ + +++DV+++ +A+RT G+ G DL N+ +A+L R
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE--- 239
Query: 469 GKTRDEIKNMSKDEISKDPVAMCDFEEALTKV-----QRSVSQADIEKHEKWFQEFGSA 522
+D + M DFEEA+ +V ++S+ + EK + E G A
Sbjct: 240 ---------------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHA 283
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 151/273 (55%), Gaps = 24/273 (8%)
Query: 217 DPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGV 274
DP + M +E P V + DV G + L E V LPL PE F GI P KG+
Sbjct: 192 DPSVTMM----TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP-KGI 246
Query: 275 LMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTI 334
L++GPPGTGKTL A+AVA TF V + L K+ GE RMVR LF++AR I
Sbjct: 247 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACII 306
Query: 335 FIDEIDSLCNAR---GASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF 391
F DEID++ AR GA G++E R + EL+ Q+DG + G + V+ ATN
Sbjct: 307 FFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQLDGFDPRGN--------IKVMFATNR 357
Query: 392 PWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGD 449
P +D AL R R+++++ LP+ E R + +I+ K++ V + + + ++R +G
Sbjct: 358 PNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGA 417
Query: 450 DLTNVCRDASLNGM--RRKIAGKTRDEIKNMSK 480
+L +VC +A + + RRK+A + +D +K + K
Sbjct: 418 ELRSVCTEAGMFAIRARRKVATE-KDFLKAVDK 449
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 156/278 (56%), Gaps = 20/278 (7%)
Query: 217 DPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGV 274
DP ++ M ++ SP + D+ GL + ++E+V LPL PE ++ GI+ P KGV
Sbjct: 165 DPMVSVM----KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK-PPKGV 219
Query: 275 LMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTI 334
+++G PGTGKTLLAKAVA + TF + + L K+ G+ R+ R +F +A APS +
Sbjct: 220 ILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIV 279
Query: 335 FIDEIDSLCNAR--GASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP 392
FIDEID++ R SG +R ELL Q+DG ++ G V V+ ATN
Sbjct: 280 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD--------VKVIMATNKI 331
Query: 393 WDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDD 450
+D AL R R++++I P+ ++K+++ I+ + +S+DV+++ + D SG D
Sbjct: 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGAD 391
Query: 451 LTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPV 488
+ +C +A L +R + T ++ K +K+ + K+ V
Sbjct: 392 IQAMCTEAGLLALRERRMQVTAEDFKQ-AKERVMKNKV 428
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 17/239 (7%)
Query: 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAKA 290
P + DV GL + L EA+VLP+ + F+ GIR P KG LM+GPPGTGKTLLA+A
Sbjct: 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARA 234
Query: 291 VATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNAR---G 347
A + TF +++ L + GE ++VR F LA+ AP+ IFIDE+D++ R
Sbjct: 235 CAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE 294
Query: 348 ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEK 405
SG+ E R + ELL Q+DG + S V VLAATN +D AL R RL++
Sbjct: 295 KSGDREVQRTM-LELLNQLDGFS--------SDDRVKVLAATNRVDVLDPALLRSGRLDR 345
Query: 406 RIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMR 464
+I PLP+ +SR ++++I+ + + D++ E+AR TD ++G L V +A + +R
Sbjct: 346 KIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 131/239 (54%), Gaps = 14/239 (5%)
Query: 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAV 291
P V + DV GL K+ + EAV LPL + ++ I P +GVL++GPPGTGKT+L KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 292 ATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNAR--GAS 349
A F V+ + K+ GE RMVR +F LAR APS IFIDE+DS+ R +
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 350 GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRI 407
G +R+ ELL Q+DG + + TN V V+ ATN +D AL R RL+++I
Sbjct: 287 GSDREVQRILIELLTQMDGFDQS-TN-------VKVIMATNRADTLDPALLRPGRLDRKI 338
Query: 408 YIP-LPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRR 465
P L + R+ + + ++ + D+D + R D SG + + ++A L +R+
Sbjct: 339 EFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 19/240 (7%)
Query: 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAKAV 291
GV + DVAG+ EAK + E V L PE F G + P KG L+ GPPG GKTLLAKAV
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAV 59
Query: 292 ATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351
ATE F ++ A G VR LF ARA AP ++IDEID++ R +
Sbjct: 60 ATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119
Query: 352 HESS---RRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKR 406
S+ + ++LLV++DG+ G+ V+VLA+TN +D AL R RL++
Sbjct: 120 GFSNTEEEQTLNQLLVEMDGM--------GTTDHVIVLASTNRADILDGALMRPGRLDRH 171
Query: 407 IYIPLPNFESRKELIKINLKTVEVSKDVDI--DEVARRTDGYSGDDLTNVCRDASLNGMR 464
++I LP + R+E+ + +LK++++++ +A T G+SG D+ N+C +A+L+ R
Sbjct: 172 VFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 16/229 (6%)
Query: 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKT 285
VL +P V + DVAG EAK L+E V L P F G R P KGVL+ GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 286 LLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNA 345
LA+AVA E F S + + G VR LF+ A+ +AP +FIDEID++
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 346 RGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR-- 401
RG+ G ++ + ++LLV++DG ++V+AATN P +D AL R
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGFEKD--------TAIVVMAATNRPDILDPALLRPG 199
Query: 402 RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDD 450
R +++I I P+ + R+++++I+ + +++DVD+ +A+RT G+ G D
Sbjct: 200 RFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 16/229 (6%)
Query: 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKT 285
VL +P V + DVAG EAK L+E V L P F G R P KGVL+ GPPG GKT
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 63
Query: 286 LLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNA 345
LA+AVA E F S + + G VR LF+ A+ +AP +FIDEID++
Sbjct: 64 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 123
Query: 346 RGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR-- 401
RG+ G ++ + ++LLV++DG ++V+AATN P +D AL R
Sbjct: 124 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--------IVVMAATNRPDILDPALLRPG 175
Query: 402 RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDD 450
R +++I I P+ + R+++++I+ + +++DVD+ +A+RT G+ G D
Sbjct: 176 RFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 16/229 (6%)
Query: 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKT 285
VL +P V + DVAG EAK + +V L P F G R P KGVL+ GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 286 LLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNA 345
LA+AVA E F S + + G VR LF+ A+ +AP +FIDEID++
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 346 RGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR-- 401
RG+ G ++ + ++LLV++DG ++V+AATN P +D AL R
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--------IVVMAATNRPDILDPALLRPG 199
Query: 402 RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDD 450
R +++I I P+ + R+++++I+ + +++DVD+ +A+RT G+ G D
Sbjct: 200 RFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 16/229 (6%)
Query: 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKT 285
VL +P V + DVAG EAK + +V L P F G R P KGVL+ GPPG GKT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKT 78
Query: 286 LLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNA 345
LA+AVA E F S + + G VR LF+ A+ +AP +FIDEID++
Sbjct: 79 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 138
Query: 346 RGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR-- 401
RG+ G ++ + ++LLV++DG ++V+AATN P +D AL R
Sbjct: 139 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--------IVVMAATNRPDILDPALLRPG 190
Query: 402 RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDD 450
R +++I I P+ + R+++++I+ + +++DVD+ +A+RT G+ G D
Sbjct: 191 RFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|2RPA|A Chain A, The Solution Structure Of N-Terminal Domain Of
Microtubule S Enzyme
Length = 78
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 4 TNSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKAL 63
T SL + +++KLAREYAL G YD++++++ G + Q+NK+L ++ D +R KW V + +
Sbjct: 6 TMSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEI 65
Query: 64 LEETDVVKQL 73
E VK +
Sbjct: 66 NVEAKQVKDI 75
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS-KWRG-ESERMVRCLFDLARAY 329
K +LM GP G GKT +A+ +A F V + + G E + ++R L D A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 330 APST-----IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI-- 382
+ +FIDEID +C SG S V+ +LL V+G +T + + G K
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG--STVSTKHGMVKTDH 168
Query: 383 VMVLAATNF----PWDIDEALRRRLEKRI 407
++ +A+ F P D+ L+ RL R+
Sbjct: 169 ILFIASGAFQVARPSDLIPELQGRLPIRV 197
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 33/171 (19%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVA------------TECGTTFFNVSSATLASKWRGES 315
RR L+ G G GKT +A+ +A +C ++ S +K+RG+
Sbjct: 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263
Query: 316 ERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTN 375
E+ + L S +FIDEI ++ A ASG QVD N
Sbjct: 264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-------------QVDAANLIKPL 310
Query: 376 EDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELI 421
+ + V+ +T + ++ D AL RR +K I I P+ E ++I
Sbjct: 311 LSSGK--IRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQII 358
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 238 DDVAGLTEAKRLLEEAVV----LPLWMPEYF--QGIRRPWKG--VLMFGPPGTGKTLLAK 289
DD L EA RLL+E + + EY Q + + KG + + GPPG GKT LAK
Sbjct: 67 DDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAK 126
Query: 290 AVATECGTTFFNVSSATL--ASKWRGESERMV-----RCLFDLARAYAPSTIF-IDEIDS 341
++A G F +S + S+ RG V R + + +A + +F +DEID
Sbjct: 127 SIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDK 186
Query: 342 LCN 344
+ +
Sbjct: 187 MSS 189
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 35/166 (21%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATEC------------GTTFFNVSSATLASKWRGE- 314
RR ++ G PG GKT + + +A ++ + +K+RGE
Sbjct: 40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 99
Query: 315 SERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGT 374
ER+ L DLA+ +FIDE+ ++ A A G ++ +K L
Sbjct: 100 EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL------------ 147
Query: 375 NEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFE 415
+R + + AT + D AL RR +K +++ P+ E
Sbjct: 148 ----ARGELHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVE 188
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 238 DDVAGLTEAKRLLEEAVVLP---LWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE 294
D V G +AK++L AV L + G+ +L+ GP G+GKTLLA+ +A
Sbjct: 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74
Query: 295 CGTTFFNVSSATLA-SKWRGE------SERMVRCLFDLARAYAPSTIFIDEIDSL 342
F + TL + + GE + + +C +D+ +A ++ID+ID +
Sbjct: 75 LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR-GIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 238 DDVAGLTEAKRLLEEAVVLP---LWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE 294
D V G +AK++L AV L + G+ +L+ GP G+GKTLLA+ +A
Sbjct: 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74
Query: 295 CGTTFFNVSSATLA-SKWRGE------SERMVRCLFDLARAYAPSTIFIDEIDSL 342
F + TL + + GE + + +C +D+ +A ++ID+ID +
Sbjct: 75 LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR-GIVYIDQIDKI 128
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLAR 327
+ P + +L+FGPPG GKT LA +A E G S + DLA
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG------------DLAA 82
Query: 328 AYAPS-----TIFIDEIDSLCN 344
A S +FIDEI L
Sbjct: 83 ILANSLEEGDILFIDEIHRLSR 104
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLAR 327
+ P + +L+FGPPG GKT LA +A E G S + DLA
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG------------DLAA 82
Query: 328 AYAPS-----TIFIDEIDSLCN 344
A S +FIDEI L
Sbjct: 83 ILANSLEEGDILFIDEIHRLSR 104
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLAR 327
+ P + +L+FGPPG GKT LA +A E G S + DLA
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG------------DLAA 82
Query: 328 AYAPS-----TIFIDEIDSLCN 344
A S +FIDEI L
Sbjct: 83 ILANSLEEGDILFIDEIHRLSR 104
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESE----RMVRCLF 323
R P VL+ GPP +GKT LA +A E F + S K G SE + ++ +F
Sbjct: 60 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS---PDKMIGFSETAKCQAMKKIF 116
Query: 324 DLARAYAPSTIFIDEIDSLCN 344
D A S + +D+I+ L +
Sbjct: 117 DDAYKSQLSCVVVDDIERLLD 137
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESE----RMVRCLF 323
R P VL+ GPP +GKT LA +A E F + S K G SE + ++ +F
Sbjct: 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS---PDKMIGFSETAKCQAMKKIF 117
Query: 324 DLARAYAPSTIFIDEIDSLCN 344
D A S + +D+I+ L +
Sbjct: 118 DDAYKSQLSCVVVDDIERLLD 138
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333
VL+ GPPG GKT LA +A+E T S L + M L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 334 IFIDEIDSLCNA 345
+FIDEI L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333
VL+ GPPG GKT LA +A+E T S L + M L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 334 IFIDEIDSLCNA 345
+FIDEI L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333
VL+ GPPG GKT LA +A+E T S L + M L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 334 IFIDEIDSLCNA 345
+FIDEI L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333
VL+ GPPG GKT LA +A+E T S L + M L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 334 IFIDEIDSLCNA 345
+FIDEI L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333
VL+ GPPG GKT LA +A+E T S L + M L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 334 IFIDEIDSLCNA 345
+FIDEI L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 267 IRRPWKGVLMFGPPGTGKTLLAKAVATEC----------GTTFFNVSSATL--ASKWRGE 314
+RR ++ G PG GKT + + +A G ++ +L +K+RGE
Sbjct: 50 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 109
Query: 315 -SERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG 350
ER+ + ++ ++ +FIDE+ ++ A A G
Sbjct: 110 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG 146
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333
VL+ GPPG G+T LA +A+E T S L + M L L R
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAILTSLERG---DV 105
Query: 334 IFIDEIDSLCNA 345
+FIDEI L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 43/75 (57%)
Query: 412 PNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKT 471
PN E+R +++KI+ + + +++ +++ ++A G SG ++ VC +A + +R + T
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 472 RDEIKNMSKDEISKD 486
+++ + + KD
Sbjct: 71 QEDFEMAVAKVMQKD 85
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 262 EYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT 297
E + + + VL+ GPPGTGKT LA A+A E G+
Sbjct: 68 ELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGS 103
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 262 EYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT 297
E + + + VL+ GPPGTGKT LA A+A E G+
Sbjct: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 267 IRRPWKGVLMFGPPGTGKTLLAKAVATEC----------GTTFFNVSSATL--ASKWRGE 314
+RR ++ G PG GKT + + +A G ++ +L +K+RGE
Sbjct: 187 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 246
Query: 315 -SERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG 373
ER+ + ++ ++ +FIDE+ ++ A A G ++ +K L
Sbjct: 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL----------- 295
Query: 374 TNEDGSRKIVMVLAATNF----PWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE 429
+R + ++ AT + D AL RR + +Y+ P E +++ + E
Sbjct: 296 -----ARGELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYE 349
Query: 430 VSKDVDIDEVA 440
V V I + A
Sbjct: 350 VHHGVRISDSA 360
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 410 PLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAG 469
P PN E+R +++KI+ + +++ +++ ++A G SG ++ VC +A +R +
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 470 KTRDEIKNMSKDEISKDPVAMCDFEEALTKV 500
T++ DFE A+ KV
Sbjct: 61 VTQE------------------DFEXAVAKV 73
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATEC------------GTTFFNVSSATLASKWRGE- 314
RR ++ G PG GKT + + +A + ++SS +K+RG+
Sbjct: 40 RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDF 99
Query: 315 SERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351
ER+ L ++ A +FIDEI ++ A GA E
Sbjct: 100 EERLKSILKEVQDAEGQVVMFIDEIHTVVGA-GAVAE 135
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF-------NVSSATLASKWRGESERMVR 320
RR ++ G PG GKT +A+ +A + V + + +K+RGE E ++
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257
Query: 321 CLFDLARAYAPSTIFID 337
+ D R +FID
Sbjct: 258 KVMDEIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF-------NVSSATLASKWRGESERMVR 320
RR ++ G PG GKT +A+ +A + V + + +K+RGE E ++
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257
Query: 321 CLFDLARAYAPSTIFID 337
+ D R +FID
Sbjct: 258 KVMDEIRQAGNIILFID 274
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 42/180 (23%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPST 333
++++GPPGTGKT LA+ +A +S+ T K E+ R + R +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---TI 109
Query: 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP- 392
+F+DE+ H ++ + L + EDG+ I + A T P
Sbjct: 110 LFVDEV------------HRFNKSQQDAFLPHI---------EDGT--ITFIGATTENPS 146
Query: 393 WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLT 452
++++ AL R R+Y L+K +L T ++ + V + +T GY G D+
Sbjct: 147 FELNSALLSR--ARVY-----------LLK-SLSTEDIEQ-VLTQAMEDKTRGYGGQDIV 191
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK 310
++ +++GPPG GKT A VA E G +++ + SK
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 257 PLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302
PL PE+ +L+ G PG GKT L K +A++ G + NV
Sbjct: 2 PLGSPEFML-----LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARA----- 328
+L+ GP G+GKTL+A+ +A +S AT ++ E + L L +A
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIP-IAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 329 --YAPSTIFIDEIDSLCN-------ARGASGE 351
+FIDEID + R SGE
Sbjct: 134 QKAQKGIVFIDEIDKISRLSENRSITRDVSGE 165
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 272 KGVLMFGPPGTGKTLLAKAVATECG--TTFFNVSSATLASKWRGESERMV----RCLFDL 325
+ VL+ G PGTGKT +A +A G T F ++ + + S ++E + R +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 326 ARAYAPSTIFIDEIDSLCNAR 346
+A A T+ + EID + N+R
Sbjct: 131 IKAGAVHTVSLHEID-VINSR 150
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.0 bits (71), Expect = 0.84, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTFFNV 302
+L+ G PG GKT L K +A++ G + NV
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 263 YFQG-IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTF-FNVSSAT 306
YFQG + RP +++ GP GTGK+ L K + E +F F+V S T
Sbjct: 11 YFQGSMSRP---IVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTT 53
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI--VMVLAATNF 391
+FIDEID +C SG S V+ +LL V+G +T + + G K ++ +A+ F
Sbjct: 254 VFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG--STVSTKHGXVKTDHILFIASGAF 311
Query: 392 ----PWDIDEALRRRLEKRIYI 409
P D+ L+ RL R+ +
Sbjct: 312 QVARPSDLIPELQGRLPIRVEL 333
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK-WRG-ESERMVRCLFDLA 326
K +LM GP G GKT +A+ +A F V + + G E + ++R L D A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI--VMVLAATNF 391
+FIDEID +C +SG S V+ +LL V+G T + + G K ++ +A+ F
Sbjct: 253 VFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGC--TVSTKHGMVKTDHILFIASGAF 310
Query: 392 ----PWDIDEALRRRLEKRIYI 409
P D+ L+ RL R+ +
Sbjct: 311 QIAKPSDLIPELQGRLPIRVEL 332
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK-WRG-ESERMVRCLFDLA 326
K +LM GP G GKT +A+ +A F V + + G E + ++R L D A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI--VMVLAATNF 391
+FIDEID +C +SG S V+ +LL V+G T + + G K ++ +A+ F
Sbjct: 252 VFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGC--TVSTKHGMVKTDHILFIASGAF 309
Query: 392 ----PWDIDEALRRRLEKRIYI 409
P D+ L+ RL R+ +
Sbjct: 310 QIAKPSDLIPELQGRLPIRVEL 331
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK-WRG-ESERMVRCLFDLA 326
K +LM GP G GKT +A+ +A F V + + G E + ++R L D A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI--VMVLAATNF 391
+FIDEID +C +SG S V+ +LL V+G T + + G K ++ +A+ F
Sbjct: 259 VFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGC--TVSTKHGMVKTDHILFIASGAF 316
Query: 392 ----PWDIDEALRRRLEKRIYI 409
P D+ L+ RL R+ +
Sbjct: 317 QIAKPSDLIPELQGRLPIRVEL 338
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI--VMVLAATNF 391
+FIDEID +C SG S V+ +LL V+G +T + + G K ++ +A+ F
Sbjct: 254 VFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG--STVSTKHGMVKTDHILFIASGAF 311
Query: 392 ----PWDIDEALRRRLEKRIYI 409
P D+ L+ RL R+ +
Sbjct: 312 QVARPSDLIPELQGRLPIRVEL 333
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304
K +LM GP G GKT +A+ +A F V +
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 274 VLMFGPPGTGKTLLAKAVATEC-GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPS 332
+L +GPPGTGKT A+A E G + N+ AS RG + + + + +A +
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG-----IDVVRNQIKDFAST 103
Query: 333 ---------TIFIDEIDSLCNA 345
I +DE D++ NA
Sbjct: 104 RQIFSKGFKLIILDEADAMTNA 125
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 279 PPGTGKTLLAKAVATECGTTFFNVSS 304
PPGT + L+A+AVA E G F+V+S
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVAS 172
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 313 GESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRV--KSELLVQVDG-- 368
G ++ V L D+ AY + ++ NA+ S + + + E+LV G
Sbjct: 489 GRTKEQVMLLIDIELAYMNTNH--EDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWL 546
Query: 369 -VNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESR 417
+NN G + GS++ VL A N W D+ + EK+ + + N + R
Sbjct: 547 TINNIGIMKGGSKEYWFVLTAENLSWYKDDEEK---EKKYMLSVDNLKLR 593
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Query: 267 IRRPWKGVLMFGPPGTGKTLLAKAVATE-----------CGTTFFNVSSATLASKWRGES 315
++RP L+ GPPGTGKT+ + + C + NV+ LA+K R
Sbjct: 373 LQRPLS--LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS--NVAVDHLAAKLRDLG 428
Query: 316 ERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSEL 362
++VR L +R S++ + +L RGA GE ++ ++K E+
Sbjct: 429 LKVVR-LTAKSREDVESSVSNLALHNLV-GRGAKGELKNLLKLKDEV 473
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 412 PNFESRKELIKINL-KTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRR 465
P+ +R + +IN+ T V D + T+GYSG D+ V +DA + +R+
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 245 EAKRLLEEAVVLP----LWMPEYFQGIRRPWKGVLMFGPPGTGKTLL 287
EA ++ +V+P + + F + +G+++ GPPG+GKT++
Sbjct: 1018 EAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 245 EAKRLLEEAVVLP----LWMPEYFQGIRRPWKGVLMFGPPGTGKTLL 287
EA ++ +V+P + + F + +G+++ GPPG+GKT++
Sbjct: 1237 EAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 313 GESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRV--KSELLVQVDG-- 368
G ++ V L D+ AY + ++ NA+ S + + + E+LV G
Sbjct: 466 GRTKEQVMLLIDIELAYMNTNH--EDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWL 523
Query: 369 -VNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESR 417
+NN G + GS++ VL A N W D+ + EK + + N + R
Sbjct: 524 TINNIGIMKGGSKEYWFVLTAENLSWYKDDEEK---EKEYMLSVDNLKLR 570
>pdb|3TRE|A Chain A, Structure Of A Translation Elongation Factor P (Efp) From
Coxiella Burnetii
Length = 191
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 223 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVV-LPLWMPE 262
+E + ET PGVR D G T+ +L AVV +PL++ E
Sbjct: 133 FVELKITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNE 173
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 428 VEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKD 486
+ +S++VD+++ R D SG D+ ++C+++ + +R + + K I KD
Sbjct: 17 MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTF-FNVSSAT 306
+++ GP GTGK+ L K + E +F F+VSS T
Sbjct: 5 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTT 38
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 274 VLMFGPPGTGKTLLAKAVATECGTTF-FNVSSAT 306
+++ GP GTGK+ L K + E +F F+VSS T
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTT 37
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 272 KGVLMFGPPGTGKTLLAKAVATECG--TTFFNVSSATLASKWRGESERMVRCL 322
+ VL+ G PGTGKT +A A G T F ++ + + S ++E + +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAF 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,973,847
Number of Sequences: 62578
Number of extensions: 591947
Number of successful extensions: 1278
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 105
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)