Query 009911
Match_columns 522
No_of_seqs 462 out of 3028
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 18:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738 AAA+-type ATPase [Post 100.0 6E-101 1E-105 761.3 48.8 488 6-522 2-491 (491)
2 KOG0739 AAA+-type ATPase [Post 100.0 7.1E-57 1.5E-61 433.3 33.5 295 219-521 114-437 (439)
3 COG1222 RPT1 ATP-dependent 26S 100.0 7.3E-51 1.6E-55 402.3 24.7 254 223-502 136-394 (406)
4 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-50 4.1E-55 425.3 26.0 269 225-518 421-692 (693)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 3.2E-48 7E-53 402.7 25.9 287 223-520 496-789 (802)
6 KOG0736 Peroxisome assembly fa 100.0 2.8E-47 6.1E-52 404.4 25.9 285 229-520 663-952 (953)
7 KOG0740 AAA+-type ATPase [Post 100.0 2.2E-46 4.7E-51 385.3 25.7 299 212-522 127-426 (428)
8 KOG0737 AAA+-type ATPase [Post 100.0 1.4E-44 3.1E-49 359.7 24.4 285 229-520 83-381 (386)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 2.5E-44 5.4E-49 373.8 25.3 268 231-504 183-497 (802)
10 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-42 6.4E-47 389.0 30.4 287 227-521 442-731 (733)
11 KOG0734 AAA+-type ATPase conta 100.0 3.7E-42 8E-47 352.7 19.8 260 233-520 299-566 (752)
12 KOG0652 26S proteasome regulat 100.0 4.8E-40 1E-44 312.0 19.6 261 215-501 148-413 (424)
13 KOG0726 26S proteasome regulat 100.0 2.6E-40 5.7E-45 317.9 16.2 253 223-501 170-427 (440)
14 KOG0727 26S proteasome regulat 100.0 2.5E-39 5.5E-44 305.8 21.9 246 230-501 147-397 (408)
15 COG0464 SpoVK ATPases of the A 100.0 9.4E-39 2E-43 346.2 26.8 265 219-515 218-492 (494)
16 KOG0728 26S proteasome regulat 100.0 1.1E-38 2.3E-43 301.3 22.5 255 223-503 132-391 (404)
17 PTZ00454 26S protease regulato 100.0 1.8E-38 3.8E-43 331.9 26.5 253 225-503 132-389 (398)
18 COG1223 Predicted ATPase (AAA+ 100.0 8.9E-39 1.9E-43 303.4 20.9 242 232-502 115-357 (368)
19 KOG0731 AAA+-type ATPase conta 100.0 1.7E-38 3.7E-43 344.4 23.0 245 230-501 303-554 (774)
20 CHL00195 ycf46 Ycf46; Provisio 100.0 3.6E-37 7.8E-42 328.6 28.1 255 233-518 223-483 (489)
21 PRK03992 proteasome-activating 100.0 6.8E-37 1.5E-41 321.0 25.3 257 225-507 118-379 (389)
22 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-36 2.6E-41 320.9 24.0 269 233-519 662-935 (952)
23 PTZ00361 26 proteosome regulat 100.0 1.4E-36 3.1E-41 319.5 24.4 254 222-501 167-425 (438)
24 KOG0729 26S proteasome regulat 100.0 6.7E-37 1.4E-41 291.4 17.9 255 220-501 159-419 (435)
25 COG0465 HflB ATP-dependent Zn 100.0 3.7E-36 8E-41 321.4 20.5 242 232-500 144-390 (596)
26 TIGR01241 FtsH_fam ATP-depende 100.0 2.5E-35 5.4E-40 319.0 26.2 264 231-521 48-321 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 7.2E-34 1.6E-38 296.4 25.2 248 227-500 111-363 (364)
28 TIGR03689 pup_AAA proteasome A 100.0 5.7E-33 1.2E-37 296.0 25.1 255 224-500 168-478 (512)
29 KOG0651 26S proteasome regulat 100.0 8.9E-34 1.9E-38 275.5 16.5 253 223-501 117-374 (388)
30 CHL00176 ftsH cell division pr 100.0 9.3E-33 2E-37 303.3 25.7 241 233-500 178-423 (638)
31 PRK10733 hflB ATP-dependent me 100.0 7E-32 1.5E-36 299.2 25.8 261 234-521 148-418 (644)
32 KOG0730 AAA+-type ATPase [Post 100.0 3E-32 6.4E-37 287.9 21.0 222 233-465 180-404 (693)
33 TIGR01243 CDC48 AAA family ATP 100.0 5E-31 1.1E-35 297.8 26.2 264 232-504 172-439 (733)
34 KOG0741 AAA+-type ATPase [Post 100.0 5.5E-32 1.2E-36 277.9 16.6 271 233-514 214-506 (744)
35 KOG0732 AAA+-type ATPase conta 100.0 7.7E-31 1.7E-35 291.5 17.0 260 233-504 260-529 (1080)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.5E-30 9.8E-35 295.7 21.1 203 268-500 1627-1877(2281)
37 PLN00020 ribulose bisphosphate 100.0 6.9E-29 1.5E-33 250.2 20.6 191 268-462 145-351 (413)
38 KOG0742 AAA+-type ATPase [Post 99.9 3.7E-21 8.1E-26 193.2 19.8 214 235-463 352-593 (630)
39 KOG0744 AAA+-type ATPase [Post 99.9 1.6E-21 3.5E-26 191.1 16.2 235 237-499 141-413 (423)
40 TIGR02881 spore_V_K stage V sp 99.9 5.1E-21 1.1E-25 190.8 20.0 215 237-468 5-244 (261)
41 KOG0736 Peroxisome assembly fa 99.9 7E-21 1.5E-25 203.9 20.3 225 272-506 432-659 (953)
42 CHL00181 cbbX CbbX; Provisiona 99.9 2.2E-20 4.7E-25 188.2 21.9 213 238-468 23-260 (287)
43 TIGR02880 cbbX_cfxQ probable R 99.9 5.9E-20 1.3E-24 185.1 21.2 213 239-468 23-259 (284)
44 PF00004 AAA: ATPase family as 99.8 1.7E-20 3.6E-25 166.2 14.5 130 274-411 1-132 (132)
45 KOG0735 AAA+-type ATPase [Post 99.8 1.5E-19 3.2E-24 192.1 19.3 235 238-502 408-650 (952)
46 PF05496 RuvB_N: Holliday junc 99.8 6.2E-20 1.3E-24 174.7 13.4 201 230-458 16-225 (233)
47 TIGR02639 ClpA ATP-dependent C 99.8 2.6E-18 5.6E-23 194.2 22.4 256 221-518 165-451 (731)
48 KOG0743 AAA+-type ATPase [Post 99.8 7.9E-19 1.7E-23 180.4 15.3 205 235-455 198-413 (457)
49 PRK12323 DNA polymerase III su 99.8 5.7E-18 1.2E-22 182.9 22.5 192 228-460 6-231 (700)
50 COG2256 MGS1 ATPase related to 99.8 2.4E-18 5.1E-23 174.2 18.1 178 233-457 19-212 (436)
51 PRK07003 DNA polymerase III su 99.8 7.7E-18 1.7E-22 184.0 22.6 192 228-460 6-226 (830)
52 PRK00080 ruvB Holliday junctio 99.8 5.6E-17 1.2E-21 167.1 25.1 207 230-464 17-232 (328)
53 TIGR00635 ruvB Holliday juncti 99.8 2E-17 4.2E-22 168.6 21.4 201 236-464 2-211 (305)
54 PRK14956 DNA polymerase III su 99.8 7.2E-17 1.6E-21 170.6 24.2 191 228-459 8-227 (484)
55 COG2255 RuvB Holliday junction 99.8 5E-17 1.1E-21 157.7 20.4 208 231-466 19-235 (332)
56 PRK14949 DNA polymerase III su 99.8 9.4E-17 2E-21 178.6 24.2 197 228-459 6-225 (944)
57 PRK14960 DNA polymerase III su 99.7 1.4E-16 3.1E-21 172.6 23.4 206 228-478 5-239 (702)
58 PRK07994 DNA polymerase III su 99.7 2.1E-16 4.5E-21 173.4 24.5 192 228-460 6-226 (647)
59 PRK11034 clpA ATP-dependent Cl 99.7 7.6E-17 1.6E-21 180.8 21.3 240 220-501 168-434 (758)
60 KOG2028 ATPase related to the 99.7 1.3E-16 2.7E-21 159.0 19.6 183 273-501 164-369 (554)
61 TIGR00763 lon ATP-dependent pr 99.7 4.1E-17 8.8E-22 185.5 17.9 240 239-500 321-586 (775)
62 PRK14962 DNA polymerase III su 99.7 2.3E-16 5E-21 168.8 22.3 189 228-457 4-221 (472)
63 PRK14958 DNA polymerase III su 99.7 2.6E-16 5.7E-21 170.1 22.5 192 228-460 6-226 (509)
64 PLN03025 replication factor C 99.7 4.6E-16 9.9E-21 159.7 23.2 187 228-456 3-202 (319)
65 PRK08691 DNA polymerase III su 99.7 5.2E-16 1.1E-20 169.7 23.5 193 228-461 6-227 (709)
66 PRK14961 DNA polymerase III su 99.7 5.4E-16 1.2E-20 161.8 22.4 191 228-459 6-225 (363)
67 COG0464 SpoVK ATPases of the A 99.7 3.8E-16 8.3E-21 169.6 21.6 225 256-503 2-229 (494)
68 KOG0989 Replication factor C, 99.7 6.1E-16 1.3E-20 151.7 20.6 183 225-445 23-222 (346)
69 PRK13342 recombination factor 99.7 2.6E-16 5.7E-21 167.0 19.8 187 228-459 2-201 (413)
70 TIGR03345 VI_ClpV1 type VI sec 99.7 3.6E-16 7.8E-21 178.3 22.1 212 220-460 169-408 (852)
71 PRK14964 DNA polymerase III su 99.7 5.9E-16 1.3E-20 165.2 22.3 193 228-461 3-224 (491)
72 PRK07764 DNA polymerase III su 99.7 5.6E-16 1.2E-20 174.9 23.0 191 228-459 5-226 (824)
73 TIGR02902 spore_lonB ATP-depen 99.7 1.5E-16 3.3E-21 173.2 17.8 231 225-500 52-332 (531)
74 PRK04195 replication factor C 99.7 2.8E-16 6E-21 170.0 19.0 195 227-460 3-205 (482)
75 PRK14951 DNA polymerase III su 99.7 1.1E-15 2.3E-20 167.4 22.5 193 228-461 6-232 (618)
76 PRK14959 DNA polymerase III su 99.7 1.8E-15 3.8E-20 164.8 23.6 190 227-457 5-223 (624)
77 PRK06645 DNA polymerase III su 99.7 1.7E-15 3.8E-20 162.8 22.5 199 228-461 11-236 (507)
78 TIGR00390 hslU ATP-dependent p 99.7 2.8E-16 6.1E-21 162.5 14.8 183 240-422 14-343 (441)
79 COG0466 Lon ATP-dependent Lon 99.7 5.9E-16 1.3E-20 166.3 17.2 238 239-500 324-584 (782)
80 PRK10865 protein disaggregatio 99.7 6.8E-16 1.5E-20 176.5 18.5 181 220-429 160-358 (857)
81 PRK05896 DNA polymerase III su 99.7 3.3E-15 7.2E-20 161.9 22.8 191 227-458 5-224 (605)
82 PRK14952 DNA polymerase III su 99.7 4.4E-15 9.5E-20 162.0 22.8 190 229-459 4-224 (584)
83 CHL00095 clpC Clp protease ATP 99.7 2E-15 4.4E-20 172.7 21.0 213 220-461 161-400 (821)
84 PRK14963 DNA polymerase III su 99.7 5.3E-15 1.2E-19 159.6 22.8 190 228-458 4-221 (504)
85 PRK00149 dnaA chromosomal repl 99.7 7.3E-15 1.6E-19 157.7 23.4 245 233-509 117-377 (450)
86 PRK05201 hslU ATP-dependent pr 99.7 5.2E-16 1.1E-20 160.6 13.8 183 240-422 17-345 (443)
87 TIGR03346 chaperone_ClpB ATP-d 99.7 2.9E-15 6.3E-20 171.9 21.4 212 220-460 155-394 (852)
88 COG2812 DnaX DNA polymerase II 99.7 1.3E-15 2.8E-20 162.3 17.0 199 228-461 6-227 (515)
89 TIGR00362 DnaA chromosomal rep 99.7 8.9E-15 1.9E-19 155.0 23.5 243 234-509 106-365 (405)
90 PRK14957 DNA polymerase III su 99.7 8.2E-15 1.8E-19 158.6 23.5 192 228-460 6-226 (546)
91 PRK12402 replication factor C 99.7 4.1E-15 8.8E-20 153.4 20.4 194 227-459 4-228 (337)
92 PRK14969 DNA polymerase III su 99.7 6.4E-15 1.4E-19 160.2 22.6 193 228-461 6-227 (527)
93 PHA02544 44 clamp loader, smal 99.7 2.7E-15 6E-20 153.6 17.4 163 227-425 10-173 (316)
94 PRK07133 DNA polymerase III su 99.6 1.3E-14 2.9E-19 160.1 22.5 198 227-459 7-224 (725)
95 PRK07940 DNA polymerase III su 99.6 5.4E-15 1.2E-19 154.9 18.3 186 236-455 3-215 (394)
96 PRK06305 DNA polymerase III su 99.6 3.2E-14 6.9E-19 152.1 24.0 190 228-458 7-226 (451)
97 PRK05342 clpX ATP-dependent pr 99.6 1.1E-14 2.5E-19 153.2 20.0 226 240-466 73-382 (412)
98 PRK14965 DNA polymerase III su 99.6 2.2E-14 4.9E-19 157.7 22.9 191 228-459 6-225 (576)
99 KOG2004 Mitochondrial ATP-depe 99.6 1.4E-15 3E-20 162.6 12.8 172 238-425 411-596 (906)
100 PRK09111 DNA polymerase III su 99.6 3.4E-14 7.3E-19 155.9 23.6 212 228-478 14-253 (598)
101 PRK05563 DNA polymerase III su 99.6 2.8E-14 6.1E-19 156.2 22.8 192 228-460 6-226 (559)
102 TIGR02397 dnaX_nterm DNA polym 99.6 2.3E-14 4.9E-19 149.1 21.0 192 228-460 4-224 (355)
103 PRK14088 dnaA chromosomal repl 99.6 5.1E-14 1.1E-18 150.3 23.0 245 232-509 99-362 (440)
104 PRK14086 dnaA chromosomal repl 99.6 4.7E-14 1E-18 153.1 22.8 215 272-509 315-544 (617)
105 PRK14955 DNA polymerase III su 99.6 5.6E-14 1.2E-18 148.4 22.8 191 228-459 6-233 (397)
106 PRK14953 DNA polymerase III su 99.6 6.9E-14 1.5E-18 150.5 22.8 193 227-460 5-226 (486)
107 PRK00440 rfc replication facto 99.6 1.5E-13 3.3E-18 140.5 24.3 192 226-459 5-208 (319)
108 PRK13341 recombination factor 99.6 6.8E-14 1.5E-18 156.4 22.7 187 228-459 18-222 (725)
109 PRK14950 DNA polymerase III su 99.6 7.9E-14 1.7E-18 154.0 22.9 190 228-458 6-225 (585)
110 PRK08451 DNA polymerase III su 99.6 9E-14 1.9E-18 149.9 22.7 194 228-462 4-226 (535)
111 PRK14948 DNA polymerase III su 99.6 8.5E-14 1.8E-18 153.7 23.1 189 228-457 6-225 (620)
112 PF05673 DUF815: Protein of un 99.6 5.4E-14 1.2E-18 135.9 18.7 193 230-456 19-243 (249)
113 PRK14954 DNA polymerase III su 99.6 1.2E-13 2.5E-18 151.9 23.6 194 229-457 7-231 (620)
114 TIGR02928 orc1/cdc6 family rep 99.6 1.4E-13 3.1E-18 143.6 23.3 259 237-520 14-325 (365)
115 PRK10787 DNA-binding ATP-depen 99.6 1.9E-14 4.1E-19 162.7 17.0 235 239-501 323-583 (784)
116 PRK14970 DNA polymerase III su 99.6 1.9E-13 4.2E-18 143.0 23.0 191 228-459 7-214 (367)
117 PRK12422 chromosomal replicati 99.6 2.8E-13 6.1E-18 144.4 23.9 201 232-458 105-317 (445)
118 PRK06647 DNA polymerase III su 99.6 1.7E-13 3.7E-18 149.7 22.6 191 228-459 6-225 (563)
119 TIGR00382 clpX endopeptidase C 99.6 7.2E-14 1.6E-18 146.5 18.1 227 240-466 79-388 (413)
120 PRK06893 DNA replication initi 99.6 2.7E-13 5.9E-18 132.6 20.8 189 232-458 10-207 (229)
121 PRK00411 cdc6 cell division co 99.6 3.1E-13 6.8E-18 142.6 22.2 260 236-520 28-333 (394)
122 PRK14087 dnaA chromosomal repl 99.6 5.4E-13 1.2E-17 142.6 24.1 217 271-509 141-376 (450)
123 PRK08084 DNA replication initi 99.6 8.8E-13 1.9E-17 129.5 23.1 208 232-498 16-234 (235)
124 PRK08903 DnaA regulatory inact 99.6 6.8E-13 1.5E-17 129.5 21.9 202 233-498 13-224 (227)
125 TIGR03420 DnaA_homol_Hda DnaA 99.5 7.7E-13 1.7E-17 128.7 21.4 190 234-464 11-211 (226)
126 PTZ00112 origin recognition co 99.5 1.4E-12 3.1E-17 143.7 24.2 191 238-455 755-979 (1164)
127 KOG0991 Replication factor C, 99.5 4.4E-13 9.6E-18 126.8 17.2 187 228-456 17-213 (333)
128 TIGR02903 spore_lon_C ATP-depe 99.5 8.1E-13 1.8E-17 146.3 21.2 240 225-501 141-431 (615)
129 PRK14971 DNA polymerase III su 99.5 1.3E-12 2.9E-17 144.2 22.3 190 229-459 8-227 (614)
130 PRK08727 hypothetical protein; 99.5 3.5E-12 7.6E-17 125.1 22.0 180 272-499 42-230 (233)
131 PRK05642 DNA replication initi 99.5 3.9E-12 8.5E-17 124.8 21.6 179 272-498 46-233 (234)
132 PRK07471 DNA polymerase III su 99.5 3.9E-12 8.5E-17 132.3 21.6 187 232-456 13-240 (365)
133 PRK11034 clpA ATP-dependent Cl 99.5 9.4E-13 2E-17 148.0 18.2 213 240-467 460-720 (758)
134 PF00308 Bac_DnaA: Bacterial d 99.5 5.2E-12 1.1E-16 122.7 20.3 197 232-459 2-213 (219)
135 KOG1969 DNA replication checkp 99.5 1.8E-12 3.8E-17 139.5 18.3 219 227-466 260-519 (877)
136 COG2607 Predicted ATPase (AAA+ 99.5 7.1E-12 1.5E-16 119.4 19.7 194 230-457 52-276 (287)
137 TIGR02640 gas_vesic_GvpN gas v 99.5 2.7E-12 5.8E-17 128.2 17.7 140 272-425 22-198 (262)
138 PRK09112 DNA polymerase III su 99.4 1.1E-11 2.4E-16 128.3 22.0 191 232-458 17-244 (351)
139 COG1219 ClpX ATP-dependent pro 99.4 5.8E-13 1.3E-17 131.2 11.7 131 240-370 63-204 (408)
140 COG0593 DnaA ATPase involved i 99.4 1.5E-11 3.1E-16 128.0 22.6 217 270-510 112-341 (408)
141 TIGR02639 ClpA ATP-dependent C 99.4 2.8E-12 6E-17 145.4 18.7 212 239-467 455-716 (731)
142 PRK13407 bchI magnesium chelat 99.4 1.3E-12 2.9E-17 133.8 13.5 169 233-425 3-216 (334)
143 COG0542 clpA ATP-binding subun 99.4 8.4E-12 1.8E-16 138.1 19.5 213 219-460 151-391 (786)
144 PRK06620 hypothetical protein; 99.4 7.4E-12 1.6E-16 121.1 16.6 174 232-457 10-192 (214)
145 CHL00081 chlI Mg-protoporyphyr 99.4 8.9E-12 1.9E-16 128.1 17.7 167 234-425 13-232 (350)
146 PRK09087 hypothetical protein; 99.4 1.1E-11 2.4E-16 120.9 17.6 172 272-500 45-222 (226)
147 PRK05564 DNA polymerase III su 99.4 2E-11 4.4E-16 125.0 20.3 172 236-448 2-185 (313)
148 PRK07399 DNA polymerase III su 99.4 9.5E-11 2.1E-15 119.7 21.7 183 236-456 2-223 (314)
149 PF01078 Mg_chelatase: Magnesi 99.3 6.6E-13 1.4E-17 125.9 5.0 151 236-415 1-205 (206)
150 COG1224 TIP49 DNA helicase TIP 99.3 7.5E-11 1.6E-15 118.1 18.5 142 331-514 292-447 (450)
151 COG1474 CDC6 Cdc6-related prot 99.3 1.3E-10 2.8E-15 120.9 21.1 253 240-520 19-312 (366)
152 cd00009 AAA The AAA+ (ATPases 99.3 4.4E-11 9.6E-16 106.3 15.3 141 242-410 2-150 (151)
153 TIGR02030 BchI-ChlI magnesium 99.3 2.7E-11 5.9E-16 124.5 15.5 163 236-424 2-218 (337)
154 TIGR03345 VI_ClpV1 type VI sec 99.3 5.2E-11 1.1E-15 136.3 19.0 210 239-466 567-834 (852)
155 PHA02244 ATPase-like protein 99.3 1.1E-10 2.4E-15 119.7 18.4 129 272-414 120-263 (383)
156 CHL00095 clpC Clp protease ATP 99.3 4.8E-11 1E-15 136.9 17.5 212 239-467 510-786 (821)
157 PRK04132 replication factor C 99.3 1.5E-10 3.3E-15 130.6 20.5 159 270-458 563-735 (846)
158 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.2E-16 124.7 10.6 142 272-426 65-234 (327)
159 TIGR02442 Cob-chelat-sub cobal 99.3 1.1E-10 2.3E-15 130.2 18.4 164 236-425 2-214 (633)
160 COG1220 HslU ATP-dependent pro 99.3 2.9E-11 6.4E-16 120.1 12.1 92 331-422 251-346 (444)
161 PRK13531 regulatory ATPase Rav 99.3 1.4E-10 3E-15 122.9 17.9 158 240-423 22-192 (498)
162 KOG0745 Putative ATP-dependent 99.3 5.7E-11 1.2E-15 121.4 13.9 98 272-369 227-332 (564)
163 COG0714 MoxR-like ATPases [Gen 99.3 2.7E-11 5.7E-16 125.0 11.7 160 240-425 26-203 (329)
164 PRK05707 DNA polymerase III su 99.3 3E-10 6.6E-15 116.7 19.2 152 268-448 19-198 (328)
165 TIGR00678 holB DNA polymerase 99.3 8.4E-11 1.8E-15 111.4 13.7 144 269-445 12-183 (188)
166 COG0542 clpA ATP-binding subun 99.2 1.1E-10 2.3E-15 129.4 15.7 212 239-467 492-759 (786)
167 PRK08058 DNA polymerase III su 99.2 2.4E-10 5.2E-15 117.8 16.8 149 236-423 3-180 (329)
168 COG0470 HolB ATPase involved i 99.2 5E-11 1.1E-15 122.1 11.7 150 238-422 1-178 (325)
169 PRK10865 protein disaggregatio 99.2 4.1E-10 8.8E-15 129.4 20.2 210 238-467 568-833 (857)
170 TIGR00764 lon_rel lon-related 99.2 2.2E-10 4.8E-15 126.7 16.5 52 233-298 13-64 (608)
171 PF07724 AAA_2: AAA domain (Cd 99.2 6.4E-11 1.4E-15 110.5 10.1 121 270-393 2-131 (171)
172 TIGR03346 chaperone_ClpB ATP-d 99.2 5E-10 1.1E-14 129.0 19.1 213 238-467 565-830 (852)
173 PF05621 TniB: Bacterial TniB 99.2 1.4E-09 2.9E-14 108.7 19.0 242 213-477 9-284 (302)
174 KOG2035 Replication factor C, 99.2 8.1E-10 1.8E-14 107.4 16.8 178 228-445 3-220 (351)
175 PF07728 AAA_5: AAA domain (dy 99.2 3.2E-11 6.9E-16 108.3 5.9 118 273-403 1-139 (139)
176 PRK11331 5-methylcytosine-spec 99.2 5E-10 1.1E-14 117.8 15.2 149 237-411 174-357 (459)
177 TIGR03015 pepcterm_ATPase puta 99.2 1.3E-09 2.8E-14 108.9 17.2 192 272-501 44-267 (269)
178 TIGR00602 rad24 checkpoint pro 99.1 8.6E-10 1.9E-14 121.5 16.8 204 226-461 72-327 (637)
179 smart00350 MCM minichromosome 99.1 7.3E-10 1.6E-14 120.7 15.8 172 239-426 204-401 (509)
180 smart00382 AAA ATPases associa 99.1 6.2E-10 1.3E-14 97.9 11.4 127 272-412 3-147 (148)
181 KOG0741 AAA+-type ATPase [Post 99.1 2.2E-09 4.8E-14 112.2 16.9 145 269-422 536-683 (744)
182 PF13177 DNA_pol3_delta2: DNA 99.1 8.5E-10 1.8E-14 102.1 11.5 134 242-412 1-161 (162)
183 TIGR00368 Mg chelatase-related 99.1 1.9E-09 4.1E-14 116.4 15.4 181 235-466 189-423 (499)
184 PRK07993 DNA polymerase III su 99.1 1E-08 2.2E-13 105.7 19.0 151 268-448 21-199 (334)
185 TIGR02031 BchD-ChlD magnesium 99.1 5.1E-09 1.1E-13 115.7 17.8 140 272-425 17-174 (589)
186 PRK06871 DNA polymerase III su 99.0 7.3E-09 1.6E-13 105.9 17.4 129 269-424 22-178 (325)
187 KOG0990 Replication factor C, 99.0 3E-09 6.5E-14 105.5 13.8 189 227-457 30-232 (360)
188 COG1239 ChlI Mg-chelatase subu 99.0 5.9E-09 1.3E-13 107.5 16.2 168 235-427 14-234 (423)
189 PF06068 TIP49: TIP49 C-termin 99.0 8.4E-09 1.8E-13 105.1 16.8 64 237-307 23-88 (398)
190 PF07726 AAA_3: ATPase family 99.0 1.4E-10 3E-15 101.6 3.0 120 273-404 1-130 (131)
191 PRK06964 DNA polymerase III su 99.0 2.8E-08 6.1E-13 102.4 20.4 133 268-423 18-202 (342)
192 PRK08769 DNA polymerase III su 99.0 1.2E-08 2.7E-13 104.1 16.7 170 243-451 9-206 (319)
193 TIGR02974 phageshock_pspF psp 99.0 5.5E-09 1.2E-13 107.6 14.3 176 272-462 23-233 (329)
194 COG0606 Predicted ATPase with 99.0 2E-10 4.3E-15 119.9 3.6 154 235-416 176-383 (490)
195 COG1221 PspF Transcriptional r 99.0 2.3E-09 5E-14 111.4 10.6 204 235-463 75-310 (403)
196 PRK11608 pspF phage shock prot 99.0 1E-08 2.2E-13 105.6 15.2 200 237-461 5-239 (326)
197 PTZ00111 DNA replication licen 99.0 1.2E-08 2.6E-13 115.0 16.8 171 239-425 451-657 (915)
198 PRK09862 putative ATP-dependen 99.0 1.2E-08 2.6E-13 109.9 15.5 152 235-415 188-391 (506)
199 PRK08116 hypothetical protein; 98.9 1.1E-08 2.4E-13 102.3 13.8 173 220-422 66-257 (268)
200 PRK06090 DNA polymerase III su 98.9 3.5E-08 7.7E-13 100.7 17.2 130 268-423 22-178 (319)
201 TIGR01817 nifA Nif-specific re 98.9 1.5E-08 3.2E-13 111.5 15.2 202 233-462 191-428 (534)
202 PRK12377 putative replication 98.9 1.1E-08 2.3E-13 101.0 12.4 146 227-403 63-222 (248)
203 PRK13765 ATP-dependent proteas 98.9 4E-08 8.6E-13 108.8 16.6 52 232-297 25-76 (637)
204 smart00763 AAA_PrkA PrkA AAA d 98.9 3E-08 6.4E-13 101.9 14.4 62 237-304 49-118 (361)
205 PRK15424 propionate catabolism 98.9 1.5E-08 3.3E-13 110.2 12.0 200 235-461 216-464 (538)
206 COG3829 RocR Transcriptional r 98.8 1.1E-08 2.4E-13 108.3 10.3 202 232-460 239-477 (560)
207 KOG1942 DNA helicase, TBP-inte 98.8 1.5E-07 3.3E-12 92.3 17.0 109 330-462 296-418 (456)
208 PF00158 Sigma54_activat: Sigm 98.8 6E-08 1.3E-12 90.3 13.8 105 272-391 23-143 (168)
209 PRK07952 DNA replication prote 98.8 4E-08 8.7E-13 96.7 12.5 103 228-342 62-174 (244)
210 COG2204 AtoC Response regulato 98.8 6E-08 1.3E-12 102.7 14.2 202 235-463 138-375 (464)
211 PRK15429 formate hydrogenlyase 98.8 7.4E-08 1.6E-12 109.0 15.7 201 234-462 372-609 (686)
212 PRK08699 DNA polymerase III su 98.8 4.9E-08 1.1E-12 100.3 12.9 131 269-423 19-183 (325)
213 PF03215 Rad17: Rad17 cell cyc 98.8 1.4E-07 3E-12 102.3 16.8 209 226-463 7-269 (519)
214 TIGR02329 propionate_PrpR prop 98.8 3.4E-08 7.4E-13 107.5 12.1 203 235-462 209-450 (526)
215 PRK05022 anaerobic nitric oxid 98.8 8.1E-08 1.8E-12 104.9 14.7 203 236-464 185-422 (509)
216 PRK10820 DNA-binding transcrip 98.8 8.4E-08 1.8E-12 104.9 14.3 203 232-461 198-436 (520)
217 KOG2227 Pre-initiation complex 98.7 1.7E-06 3.6E-11 90.2 20.9 214 218-462 133-379 (529)
218 PRK11388 DNA-binding transcrip 98.7 2.7E-07 5.9E-12 103.7 16.6 202 234-461 321-553 (638)
219 PRK08181 transposase; Validate 98.7 1.3E-07 2.8E-12 94.5 11.2 99 272-392 107-209 (269)
220 PF09336 Vps4_C: Vps4 C termin 98.7 1.6E-08 3.4E-13 77.7 3.0 44 477-520 19-62 (62)
221 PRK06835 DNA replication prote 98.6 1.1E-07 2.4E-12 97.7 10.1 111 272-403 184-305 (329)
222 KOG2680 DNA helicase TIP49, TB 98.6 2.6E-06 5.7E-11 84.0 18.6 91 392-501 339-430 (454)
223 KOG1051 Chaperone HSP104 and r 98.6 8.6E-07 1.9E-11 100.1 17.1 132 240-391 564-710 (898)
224 PF01637 Arch_ATPase: Archaeal 98.6 1.7E-07 3.8E-12 90.5 10.3 181 241-448 2-229 (234)
225 COG3604 FhlA Transcriptional r 98.6 6.6E-07 1.4E-11 93.9 14.3 200 234-462 219-456 (550)
226 KOG1970 Checkpoint RAD17-RFC c 98.6 1.5E-06 3.3E-11 92.0 16.9 74 225-303 69-142 (634)
227 PRK13406 bchD magnesium chelat 98.6 1.1E-06 2.4E-11 96.8 16.3 149 243-416 8-173 (584)
228 PRK07276 DNA polymerase III su 98.6 5.7E-06 1.2E-10 83.4 20.1 169 244-456 8-199 (290)
229 PF14532 Sigma54_activ_2: Sigm 98.6 1.9E-07 4.1E-12 84.0 8.5 98 272-404 22-129 (138)
230 COG1241 MCM2 Predicted ATPase 98.6 3.6E-07 7.8E-12 100.9 12.0 183 218-425 274-483 (682)
231 KOG1514 Origin recognition com 98.6 1.8E-06 3.9E-11 93.8 16.7 228 240-504 398-659 (767)
232 PRK06921 hypothetical protein; 98.6 3.8E-07 8.3E-12 91.2 11.0 68 271-341 117-188 (266)
233 TIGR02915 PEP_resp_reg putativ 98.5 4.6E-07 9.9E-12 97.3 11.7 198 236-462 137-372 (445)
234 PRK06526 transposase; Provisio 98.5 2.4E-07 5.1E-12 92.0 8.3 70 272-343 99-172 (254)
235 PF13173 AAA_14: AAA domain 98.5 3.3E-07 7.1E-12 81.3 8.1 69 272-342 3-73 (128)
236 KOG0478 DNA replication licens 98.5 2.9E-06 6.2E-11 91.7 16.6 186 217-425 416-626 (804)
237 PF12775 AAA_7: P-loop contain 98.5 1.5E-07 3.2E-12 94.4 6.5 142 272-427 34-195 (272)
238 PF01695 IstB_IS21: IstB-like 98.5 1.4E-07 3E-12 88.8 5.8 69 271-341 47-119 (178)
239 PRK08939 primosomal protein Dn 98.5 4.8E-07 1E-11 92.2 9.5 69 271-341 156-228 (306)
240 COG1484 DnaC DNA replication p 98.5 1.6E-06 3.5E-11 86.1 12.9 69 271-341 105-178 (254)
241 PRK05917 DNA polymerase III su 98.5 1.5E-06 3.1E-11 87.4 12.2 119 268-412 16-154 (290)
242 PRK10923 glnG nitrogen regulat 98.5 2.8E-06 6.1E-11 91.9 15.1 199 236-462 136-371 (469)
243 PRK09183 transposase/IS protei 98.5 7.9E-07 1.7E-11 88.6 9.8 70 272-342 103-176 (259)
244 PRK05818 DNA polymerase III su 98.4 4.8E-06 1E-10 82.1 14.4 116 269-412 5-147 (261)
245 PF13401 AAA_22: AAA domain; P 98.4 3E-06 6.6E-11 74.7 11.1 72 272-343 5-100 (131)
246 KOG0482 DNA replication licens 98.4 6E-06 1.3E-10 86.5 14.5 247 239-501 343-639 (721)
247 PF03969 AFG1_ATPase: AFG1-lik 98.3 7.2E-07 1.6E-11 92.8 6.1 137 269-439 60-207 (362)
248 PRK07132 DNA polymerase III su 98.3 1.9E-05 4.1E-10 80.2 16.2 126 270-423 17-160 (299)
249 PRK11361 acetoacetate metaboli 98.3 9.4E-06 2E-10 87.4 14.9 171 272-461 167-375 (457)
250 TIGR01818 ntrC nitrogen regula 98.3 1.3E-05 2.8E-10 86.5 15.3 197 238-462 134-367 (463)
251 KOG0480 DNA replication licens 98.3 4E-06 8.7E-11 90.0 10.0 177 237-427 344-544 (764)
252 cd01120 RecA-like_NTPases RecA 98.2 1.1E-05 2.3E-10 73.3 11.1 72 274-345 2-100 (165)
253 PF05729 NACHT: NACHT domain 98.2 2E-05 4.4E-10 71.9 12.7 140 273-427 2-165 (166)
254 PRK15115 response regulator Gl 98.2 3.6E-05 7.7E-10 82.7 16.2 171 272-461 158-366 (444)
255 KOG0477 DNA replication licens 98.2 2.3E-05 5E-10 84.0 14.0 78 216-301 435-512 (854)
256 PF12774 AAA_6: Hydrolytic ATP 98.2 3.1E-05 6.7E-10 75.8 13.8 133 273-421 34-176 (231)
257 PHA00729 NTP-binding motif con 98.1 2.9E-05 6.3E-10 75.2 12.6 27 272-298 18-44 (226)
258 PF00910 RNA_helicase: RNA hel 98.1 1.1E-05 2.4E-10 69.2 7.9 24 274-297 1-24 (107)
259 KOG1968 Replication factor C, 98.1 6E-06 1.3E-10 94.0 7.7 210 226-460 308-534 (871)
260 PF00493 MCM: MCM2/3/5 family 98.1 2E-06 4.4E-11 88.8 2.8 168 240-427 26-223 (331)
261 TIGR02688 conserved hypothetic 98.0 0.0002 4.3E-09 75.1 17.2 100 272-391 210-314 (449)
262 COG3267 ExeA Type II secretory 98.0 0.00025 5.3E-09 69.2 16.4 181 273-471 53-262 (269)
263 PLN03210 Resistant to P. syrin 98.0 0.00016 3.5E-09 86.7 17.5 70 218-297 161-233 (1153)
264 PF14516 AAA_35: AAA-like doma 98.0 0.0004 8.8E-09 71.8 18.1 174 269-457 29-242 (331)
265 KOG2228 Origin recognition com 98.0 0.0003 6.6E-09 71.0 16.3 160 240-425 26-219 (408)
266 PF00931 NB-ARC: NB-ARC domain 98.0 9.7E-05 2.1E-09 74.3 12.9 157 270-454 18-202 (287)
267 COG3283 TyrR Transcriptional r 98.0 8.5E-05 1.8E-09 75.3 12.1 159 232-417 198-375 (511)
268 TIGR02237 recomb_radB DNA repa 97.9 8.1E-05 1.8E-09 71.5 11.3 76 269-344 10-111 (209)
269 KOG1051 Chaperone HSP104 and r 97.9 4E-05 8.7E-10 86.9 10.1 139 272-427 209-365 (898)
270 PRK10365 transcriptional regul 97.9 0.00015 3.2E-09 77.8 13.9 170 272-460 163-370 (441)
271 PRK00771 signal recognition pa 97.9 0.00089 1.9E-08 71.5 19.5 36 270-305 94-132 (437)
272 KOG0481 DNA replication licens 97.9 0.00014 3.1E-09 76.6 12.3 76 217-301 318-394 (729)
273 TIGR01618 phage_P_loop phage n 97.9 4.8E-05 1E-09 73.7 8.2 101 269-371 10-131 (220)
274 COG1618 Predicted nucleotide k 97.9 0.00019 4E-09 65.3 11.3 24 272-295 6-29 (179)
275 cd01124 KaiC KaiC is a circadi 97.8 0.00022 4.7E-09 66.9 12.3 71 274-344 2-109 (187)
276 PRK11823 DNA repair protein Ra 97.8 0.00021 4.6E-09 76.7 13.1 99 269-367 78-195 (446)
277 cd01121 Sms Sms (bacterial rad 97.8 0.00026 5.7E-09 74.1 12.9 99 269-367 80-197 (372)
278 COG1485 Predicted ATPase [Gene 97.8 0.00032 6.9E-09 71.4 12.9 30 268-297 62-91 (367)
279 KOG2170 ATPase of the AAA+ sup 97.7 0.0011 2.3E-08 66.2 15.4 96 240-343 84-191 (344)
280 PF13207 AAA_17: AAA domain; P 97.7 3.1E-05 6.7E-10 67.4 4.2 31 274-304 2-32 (121)
281 COG4650 RtcR Sigma54-dependent 97.7 3.9E-05 8.5E-10 75.7 5.2 135 272-419 209-366 (531)
282 PRK09361 radB DNA repair and r 97.7 0.0004 8.7E-09 67.5 12.1 76 269-345 21-122 (225)
283 PRK15455 PrkA family serine pr 97.7 6.2E-05 1.3E-09 81.6 6.6 72 223-302 63-135 (644)
284 PRK06581 DNA polymerase III su 97.7 0.0064 1.4E-07 59.3 19.7 169 270-467 14-199 (263)
285 COG3284 AcoR Transcriptional a 97.7 0.00014 3E-09 78.9 9.1 174 273-462 338-540 (606)
286 PRK08118 topology modulation p 97.7 9.5E-05 2.1E-09 68.8 6.7 33 273-305 3-35 (167)
287 COG1373 Predicted ATPase (AAA+ 97.7 0.0021 4.6E-08 68.1 17.4 121 273-419 39-161 (398)
288 PHA02624 large T antigen; Prov 97.6 0.00022 4.8E-09 77.7 9.8 124 272-411 432-561 (647)
289 COG5271 MDN1 AAA ATPase contai 97.6 0.00067 1.4E-08 79.7 13.7 141 272-426 1544-1704(4600)
290 COG3854 SpoIIIAA ncharacterize 97.6 0.00018 4E-09 69.0 7.9 71 271-341 137-229 (308)
291 KOG2383 Predicted ATPase [Gene 97.6 0.0014 3E-08 67.7 14.6 161 268-459 111-297 (467)
292 PRK14974 cell division protein 97.6 0.0017 3.6E-08 67.1 15.2 34 271-304 140-176 (336)
293 PRK09376 rho transcription ter 97.6 0.00085 1.9E-08 70.0 12.4 25 273-297 171-195 (416)
294 COG5245 DYN1 Dynein, heavy cha 97.6 0.00017 3.7E-09 83.7 7.8 151 264-427 1487-1660(3164)
295 PRK07261 topology modulation p 97.5 0.00016 3.4E-09 67.5 6.4 34 273-306 2-35 (171)
296 PRK13949 shikimate kinase; Pro 97.5 0.00039 8.5E-09 64.7 8.9 32 273-304 3-34 (169)
297 PF13671 AAA_33: AAA domain; P 97.5 0.00036 7.7E-09 62.4 8.0 33 274-308 2-34 (143)
298 PRK00131 aroK shikimate kinase 97.5 0.00011 2.4E-09 67.9 4.7 33 271-303 4-36 (175)
299 TIGR02012 tigrfam_recA protein 97.5 0.00075 1.6E-08 69.1 11.0 76 270-345 54-148 (321)
300 TIGR02858 spore_III_AA stage I 97.5 0.00036 7.9E-09 69.9 8.5 68 272-339 112-203 (270)
301 PHA02774 E1; Provisional 97.5 0.00045 9.8E-09 75.0 9.7 113 272-411 435-554 (613)
302 PRK06067 flagellar accessory p 97.5 0.0015 3.2E-08 64.0 12.6 75 269-343 23-133 (234)
303 PRK08533 flagellar accessory p 97.5 0.0018 3.9E-08 63.5 13.0 74 270-343 23-130 (230)
304 PF03266 NTPase_1: NTPase; In 97.4 0.00011 2.4E-09 68.3 3.9 23 273-295 1-23 (168)
305 KOG2543 Origin recognition com 97.4 0.0024 5.2E-08 65.6 13.3 59 240-307 8-66 (438)
306 cd00983 recA RecA is a bacter 97.4 0.0014 3E-08 67.3 11.8 75 271-345 55-148 (325)
307 PF05707 Zot: Zonular occluden 97.4 0.0003 6.5E-09 66.9 6.4 122 274-411 3-145 (193)
308 cd03283 ABC_MutS-like MutS-lik 97.4 0.00091 2E-08 64.0 9.6 67 272-339 26-114 (199)
309 KOG3347 Predicted nucleotide k 97.4 0.00015 3.2E-09 65.0 3.7 33 272-304 8-40 (176)
310 PRK13947 shikimate kinase; Pro 97.4 0.00018 3.9E-09 66.7 4.4 32 273-304 3-34 (171)
311 PRK05800 cobU adenosylcobinami 97.4 0.0019 4.2E-08 60.2 11.3 34 273-306 3-36 (170)
312 COG5271 MDN1 AAA ATPase contai 97.4 0.0011 2.3E-08 78.1 11.1 139 273-425 890-1047(4600)
313 cd01394 radB RadB. The archaea 97.4 0.0019 4.1E-08 62.4 11.6 36 269-304 17-55 (218)
314 PF13604 AAA_30: AAA domain; P 97.4 0.00061 1.3E-08 65.1 7.9 35 272-306 19-56 (196)
315 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.003 6.4E-08 62.1 12.8 37 267-303 17-56 (237)
316 PRK04296 thymidine kinase; Pro 97.3 0.0018 3.8E-08 61.5 10.7 31 273-303 4-37 (190)
317 PRK11889 flhF flagellar biosyn 97.3 0.0067 1.5E-07 63.5 15.6 59 243-304 216-277 (436)
318 PRK00625 shikimate kinase; Pro 97.3 0.00022 4.8E-09 66.7 4.3 32 273-304 2-33 (173)
319 PRK03839 putative kinase; Prov 97.3 0.00021 4.5E-09 67.0 4.1 31 273-303 2-32 (180)
320 PF06745 KaiC: KaiC; InterPro 97.3 0.0039 8.5E-08 60.6 13.2 96 269-368 17-149 (226)
321 COG0703 AroK Shikimate kinase 97.3 0.0002 4.4E-09 66.3 3.8 33 272-304 3-35 (172)
322 COG4088 Predicted nucleotide k 97.3 0.0016 3.6E-08 61.6 9.7 24 273-296 3-26 (261)
323 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.0026 5.6E-08 61.6 11.4 22 272-293 30-51 (213)
324 cd00464 SK Shikimate kinase (S 97.3 0.00026 5.7E-09 64.1 4.2 31 273-303 1-31 (154)
325 COG4619 ABC-type uncharacteriz 97.3 0.0013 2.7E-08 60.5 8.4 27 269-295 27-53 (223)
326 PF06309 Torsin: Torsin; Inte 97.3 0.0015 3.2E-08 57.5 8.6 49 240-295 27-77 (127)
327 TIGR00416 sms DNA repair prote 97.3 0.0032 6.8E-08 67.9 12.9 76 269-344 92-184 (454)
328 PRK12723 flagellar biosynthesi 97.2 0.0054 1.2E-07 64.6 14.1 25 271-295 174-198 (388)
329 TIGR01613 primase_Cterm phage/ 97.2 0.0037 7.9E-08 63.9 12.5 85 243-340 54-138 (304)
330 PRK10867 signal recognition pa 97.2 0.03 6.4E-07 59.9 19.6 72 269-340 98-193 (433)
331 cd01131 PilT Pilus retraction 97.2 0.00052 1.1E-08 65.6 5.6 67 273-339 3-83 (198)
332 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0025 5.3E-08 62.2 10.5 37 269-305 17-62 (235)
333 PRK14532 adenylate kinase; Pro 97.2 0.00036 7.8E-09 65.8 4.3 30 273-302 2-31 (188)
334 PF00448 SRP54: SRP54-type pro 97.2 0.002 4.4E-08 61.5 9.2 24 272-295 2-25 (196)
335 PRK06762 hypothetical protein; 97.2 0.0016 3.5E-08 60.0 8.4 38 272-309 3-40 (166)
336 PRK10536 hypothetical protein; 97.2 0.0068 1.5E-07 59.9 13.0 22 273-294 76-97 (262)
337 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00039 8.5E-09 65.1 4.2 29 274-302 2-30 (183)
338 cd01393 recA_like RecA is a b 97.2 0.0031 6.7E-08 61.1 10.6 37 269-305 17-62 (226)
339 cd03216 ABC_Carb_Monos_I This 97.2 0.0017 3.6E-08 60.0 8.2 71 270-340 25-110 (163)
340 PRK14722 flhF flagellar biosyn 97.1 0.0027 6E-08 66.3 10.6 24 272-295 138-161 (374)
341 PF12780 AAA_8: P-loop contain 97.1 0.036 7.9E-07 55.5 18.3 89 239-339 9-98 (268)
342 cd00046 DEXDc DEAD-like helica 97.1 0.0017 3.6E-08 56.5 7.9 25 272-296 1-25 (144)
343 PRK13695 putative NTPase; Prov 97.1 0.0048 1E-07 57.5 11.2 23 273-295 2-24 (174)
344 PRK06217 hypothetical protein; 97.1 0.00044 9.6E-09 65.1 4.2 32 273-304 3-34 (183)
345 PF00437 T2SE: Type II/IV secr 97.1 0.00066 1.4E-08 67.9 5.6 97 234-340 100-207 (270)
346 cd01128 rho_factor Transcripti 97.1 0.0017 3.7E-08 64.3 8.3 26 272-297 17-42 (249)
347 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0013 2.9E-08 65.7 7.4 93 235-340 57-159 (264)
348 cd00544 CobU Adenosylcobinamid 97.1 0.0052 1.1E-07 57.2 10.9 71 274-346 2-89 (169)
349 PRK04841 transcriptional regul 97.1 0.012 2.6E-07 68.8 16.5 153 272-449 33-221 (903)
350 cd02021 GntK Gluconate kinase 97.1 0.00051 1.1E-08 62.2 4.0 30 274-303 2-31 (150)
351 cd02020 CMPK Cytidine monophos 97.1 0.00055 1.2E-08 61.4 4.0 30 274-303 2-31 (147)
352 PRK13808 adenylate kinase; Pro 97.1 0.0022 4.8E-08 65.9 8.8 30 273-302 2-31 (333)
353 PF13191 AAA_16: AAA ATPase do 97.1 0.00062 1.3E-08 63.4 4.5 59 240-307 2-63 (185)
354 PRK14531 adenylate kinase; Pro 97.1 0.00064 1.4E-08 64.0 4.5 31 272-302 3-33 (183)
355 PRK13948 shikimate kinase; Pro 97.1 0.00072 1.6E-08 63.8 4.8 35 269-303 8-42 (182)
356 cd01428 ADK Adenylate kinase ( 97.0 0.00058 1.3E-08 64.4 4.2 30 274-303 2-31 (194)
357 cd00984 DnaB_C DnaB helicase C 97.0 0.0069 1.5E-07 59.3 11.9 35 269-303 11-49 (242)
358 PRK13900 type IV secretion sys 97.0 0.0015 3.2E-08 67.5 7.3 69 272-340 161-245 (332)
359 TIGR00064 ftsY signal recognit 97.0 0.016 3.5E-07 58.3 14.6 37 269-305 70-109 (272)
360 TIGR01313 therm_gnt_kin carboh 97.0 0.00055 1.2E-08 63.0 3.7 30 274-303 1-30 (163)
361 PRK14530 adenylate kinase; Pro 97.0 0.00068 1.5E-08 65.6 4.5 30 273-302 5-34 (215)
362 cd00227 CPT Chloramphenicol (C 97.0 0.00066 1.4E-08 63.4 4.2 35 272-306 3-37 (175)
363 cd02027 APSK Adenosine 5'-phos 97.0 0.0032 6.9E-08 57.3 8.6 34 274-307 2-38 (149)
364 PRK10416 signal recognition pa 97.0 0.025 5.5E-07 58.1 16.1 62 243-304 85-150 (318)
365 cd01122 GP4d_helicase GP4d_hel 97.0 0.0091 2E-07 59.6 12.7 36 269-304 28-67 (271)
366 PF07693 KAP_NTPase: KAP famil 97.0 0.022 4.8E-07 58.3 15.8 29 270-298 19-47 (325)
367 PF05970 PIF1: PIF1-like helic 97.0 0.0033 7.2E-08 65.9 9.6 38 271-308 22-62 (364)
368 cd03243 ABC_MutS_homologs The 97.0 0.0071 1.5E-07 57.8 11.2 21 272-292 30-50 (202)
369 PRK03731 aroL shikimate kinase 97.0 0.00082 1.8E-08 62.3 4.5 33 272-304 3-35 (171)
370 PRK09354 recA recombinase A; P 97.0 0.0061 1.3E-07 63.1 11.2 74 271-344 60-152 (349)
371 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0054 1.2E-07 60.7 10.5 34 274-307 2-38 (249)
372 KOG0479 DNA replication licens 97.0 0.0022 4.8E-08 68.8 7.9 168 240-425 303-498 (818)
373 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0046 1E-07 55.9 9.1 69 270-340 25-98 (144)
374 PRK13946 shikimate kinase; Pro 97.0 0.00073 1.6E-08 63.7 4.0 33 272-304 11-43 (184)
375 TIGR02782 TrbB_P P-type conjug 96.9 0.00082 1.8E-08 68.4 4.5 68 272-339 133-213 (299)
376 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.011 2.3E-07 56.5 11.9 21 272-292 29-49 (200)
377 PF08433 KTI12: Chromatin asso 96.9 0.0078 1.7E-07 60.4 11.3 71 274-344 4-84 (270)
378 cd01130 VirB11-like_ATPase Typ 96.9 0.0013 2.8E-08 62.2 5.4 69 271-339 25-109 (186)
379 PRK05057 aroK shikimate kinase 96.9 0.00097 2.1E-08 62.3 4.5 33 272-304 5-37 (172)
380 PRK12724 flagellar biosynthesi 96.9 0.034 7.4E-07 58.9 16.4 24 272-295 224-247 (432)
381 PRK04328 hypothetical protein; 96.9 0.013 2.8E-07 58.1 12.8 35 269-303 21-58 (249)
382 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.014 3.1E-07 56.6 12.8 35 270-304 15-52 (224)
383 PF05272 VirE: Virulence-assoc 96.9 0.0016 3.5E-08 62.3 6.0 114 272-410 53-168 (198)
384 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.01 2.3E-07 59.1 12.1 35 269-303 34-71 (259)
385 TIGR01420 pilT_fam pilus retra 96.9 0.0015 3.2E-08 68.0 6.1 68 272-339 123-204 (343)
386 PF04665 Pox_A32: Poxvirus A32 96.9 0.0097 2.1E-07 58.4 11.4 129 272-424 14-169 (241)
387 COG0563 Adk Adenylate kinase a 96.9 0.0013 2.9E-08 61.7 5.2 28 273-300 2-29 (178)
388 TIGR03499 FlhF flagellar biosy 96.9 0.0077 1.7E-07 60.9 11.0 35 271-305 194-233 (282)
389 COG1066 Sms Predicted ATP-depe 96.9 0.009 2E-07 62.2 11.4 98 269-366 91-206 (456)
390 COG1116 TauB ABC-type nitrate/ 96.9 0.0052 1.1E-07 60.0 9.2 24 272-295 30-53 (248)
391 PF01583 APS_kinase: Adenylyls 96.9 0.0032 7E-08 57.7 7.4 65 273-337 4-80 (156)
392 PTZ00088 adenylate kinase 1; P 96.9 0.001 2.2E-08 65.2 4.3 31 273-303 8-38 (229)
393 PRK14528 adenylate kinase; Pro 96.9 0.0011 2.4E-08 62.7 4.4 32 272-303 2-33 (186)
394 PRK06547 hypothetical protein; 96.9 0.0012 2.6E-08 61.7 4.6 34 270-303 14-47 (172)
395 PRK05973 replicative DNA helic 96.9 0.016 3.5E-07 56.9 12.5 35 269-303 62-99 (237)
396 TIGR02525 plasmid_TraJ plasmid 96.9 0.0019 4.1E-08 67.7 6.4 68 273-340 151-235 (372)
397 PTZ00202 tuzin; Provisional 96.8 0.083 1.8E-06 56.1 18.1 60 237-305 261-320 (550)
398 PRK12726 flagellar biosynthesi 96.8 0.018 3.9E-07 60.1 13.3 85 215-304 155-242 (407)
399 COG4178 ABC-type uncharacteriz 96.8 0.0034 7.4E-08 68.9 8.2 27 269-295 417-443 (604)
400 smart00534 MUTSac ATPase domai 96.8 0.016 3.4E-07 54.7 11.8 19 274-292 2-20 (185)
401 PRK13833 conjugal transfer pro 96.8 0.0031 6.8E-08 64.7 7.5 68 272-339 145-224 (323)
402 PF13521 AAA_28: AAA domain; P 96.8 0.0027 5.8E-08 58.4 6.5 34 274-308 2-35 (163)
403 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0012 2.6E-08 61.8 4.2 30 273-302 5-34 (188)
404 COG1102 Cmk Cytidylate kinase 96.8 0.0011 2.5E-08 60.3 3.7 28 274-301 3-30 (179)
405 PRK05703 flhF flagellar biosyn 96.8 0.019 4.1E-07 61.4 13.6 34 272-305 222-260 (424)
406 PRK02496 adk adenylate kinase; 96.8 0.0012 2.6E-08 62.1 4.0 30 273-302 3-32 (184)
407 TIGR01448 recD_rel helicase, p 96.8 0.0067 1.4E-07 69.1 10.7 102 272-396 339-459 (720)
408 PRK13764 ATPase; Provisional 96.8 0.0022 4.8E-08 70.8 6.4 68 272-340 258-334 (602)
409 cd03238 ABC_UvrA The excision 96.8 0.01 2.2E-07 55.6 10.0 25 270-294 20-44 (176)
410 PF13245 AAA_19: Part of AAA d 96.8 0.0023 5E-08 51.3 4.9 33 273-305 12-51 (76)
411 TIGR01351 adk adenylate kinase 96.8 0.0013 2.8E-08 63.4 4.0 29 274-302 2-30 (210)
412 cd03228 ABCC_MRP_Like The MRP 96.8 0.0073 1.6E-07 56.1 8.9 26 270-295 27-52 (171)
413 COG2874 FlaH Predicted ATPases 96.7 0.014 3E-07 55.8 10.5 112 274-403 31-178 (235)
414 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0092 2E-07 56.0 9.5 69 270-340 24-99 (177)
415 PLN02200 adenylate kinase fami 96.7 0.0018 3.9E-08 63.6 4.9 36 271-308 43-78 (234)
416 TIGR00959 ffh signal recogniti 96.7 0.18 4E-06 53.9 20.3 71 270-340 98-192 (428)
417 PRK00279 adk adenylate kinase; 96.7 0.0016 3.4E-08 63.0 4.3 30 273-302 2-31 (215)
418 COG1126 GlnQ ABC-type polar am 96.7 0.0085 1.8E-07 57.4 8.9 22 272-293 29-50 (240)
419 PF09848 DUF2075: Uncharacteri 96.7 0.0061 1.3E-07 63.6 8.9 23 273-295 3-25 (352)
420 COG2804 PulE Type II secretory 96.7 0.004 8.6E-08 66.5 7.4 93 234-340 234-337 (500)
421 smart00487 DEXDc DEAD-like hel 96.7 0.024 5.1E-07 52.4 12.1 33 272-304 25-62 (201)
422 PF13481 AAA_25: AAA domain; P 96.7 0.014 3.1E-07 54.9 10.4 74 272-345 33-156 (193)
423 PRK04040 adenylate kinase; Pro 96.7 0.0021 4.4E-08 61.0 4.6 31 272-302 3-35 (188)
424 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.027 5.9E-07 54.7 12.6 35 269-303 18-55 (229)
425 COG1936 Predicted nucleotide k 96.7 0.0015 3.1E-08 60.3 3.3 30 273-303 2-31 (180)
426 PRK13894 conjugal transfer ATP 96.7 0.0047 1E-07 63.4 7.5 68 272-339 149-228 (319)
427 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0057 1.2E-07 63.1 8.1 37 272-308 163-199 (325)
428 COG0529 CysC Adenylylsulfate k 96.6 0.0092 2E-07 55.3 8.4 68 269-336 21-99 (197)
429 TIGR00767 rho transcription te 96.6 0.0061 1.3E-07 63.9 8.2 25 272-296 169-193 (415)
430 PRK08154 anaerobic benzoate ca 96.6 0.0031 6.8E-08 64.5 6.0 35 269-303 131-165 (309)
431 TIGR02655 circ_KaiC circadian 96.6 0.022 4.7E-07 62.1 12.8 76 269-344 261-367 (484)
432 PF07931 CPT: Chloramphenicol 96.6 0.021 4.5E-07 53.4 10.8 37 273-309 3-39 (174)
433 COG1125 OpuBA ABC-type proline 96.6 0.0078 1.7E-07 58.9 8.0 23 273-295 29-51 (309)
434 PF13238 AAA_18: AAA domain; P 96.6 0.0018 3.9E-08 56.4 3.3 22 274-295 1-22 (129)
435 TIGR02533 type_II_gspE general 96.6 0.0057 1.2E-07 66.5 7.7 94 234-340 218-321 (486)
436 PRK08099 bifunctional DNA-bind 96.6 0.006 1.3E-07 64.7 7.7 31 272-302 220-250 (399)
437 PF00406 ADK: Adenylate kinase 96.6 0.0019 4.1E-08 58.7 3.4 32 276-309 1-32 (151)
438 cd03247 ABCC_cytochrome_bd The 96.6 0.018 3.9E-07 53.8 10.1 26 270-295 27-52 (178)
439 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.021 4.6E-07 54.8 10.8 23 272-294 30-52 (204)
440 PRK13851 type IV secretion sys 96.5 0.0047 1E-07 64.0 6.6 69 271-339 162-245 (344)
441 TIGR02788 VirB11 P-type DNA tr 96.5 0.0029 6.3E-08 64.8 5.1 70 271-340 144-228 (308)
442 PRK04301 radA DNA repair and r 96.5 0.016 3.5E-07 59.5 10.5 36 270-305 101-145 (317)
443 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.024 5.2E-07 51.7 10.6 70 270-341 24-109 (157)
444 cd03115 SRP The signal recogni 96.5 0.01 2.2E-07 55.0 8.2 33 273-305 2-37 (173)
445 COG1855 ATPase (PilT family) [ 96.5 0.0011 2.5E-08 69.1 1.8 61 218-295 227-287 (604)
446 TIGR01425 SRP54_euk signal rec 96.5 0.063 1.4E-06 57.2 14.8 36 270-305 99-137 (429)
447 cd03246 ABCC_Protease_Secretio 96.5 0.031 6.7E-07 52.0 11.2 26 270-295 27-52 (173)
448 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0098 2.1E-07 56.8 8.0 66 270-335 14-98 (199)
449 PRK01184 hypothetical protein; 96.5 0.0026 5.7E-08 59.7 4.0 29 273-302 3-31 (184)
450 PRK14527 adenylate kinase; Pro 96.5 0.0024 5.2E-08 60.5 3.7 31 272-302 7-37 (191)
451 cd02019 NK Nucleoside/nucleoti 96.5 0.0034 7.5E-08 49.2 4.0 22 274-295 2-23 (69)
452 PRK04182 cytidylate kinase; Pr 96.5 0.0027 5.8E-08 59.0 3.9 30 273-302 2-31 (180)
453 PLN02840 tRNA dimethylallyltra 96.5 0.017 3.6E-07 61.2 10.1 36 272-307 22-57 (421)
454 PLN02674 adenylate kinase 96.4 0.0032 6.9E-08 62.1 4.4 35 272-308 32-66 (244)
455 PRK00889 adenylylsulfate kinas 96.4 0.017 3.7E-07 53.7 9.1 36 271-306 4-42 (175)
456 cd03214 ABC_Iron-Siderophores_ 96.4 0.019 4.2E-07 53.7 9.5 26 270-295 24-49 (180)
457 PRK06731 flhF flagellar biosyn 96.4 0.075 1.6E-06 53.3 14.1 26 270-295 74-99 (270)
458 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0031 6.7E-08 58.1 4.0 30 273-302 2-31 (171)
459 PRK14526 adenylate kinase; Pro 96.4 0.0034 7.3E-08 60.7 4.3 29 273-301 2-30 (211)
460 cd01125 repA Hexameric Replica 96.4 0.036 7.7E-07 54.5 11.7 22 273-294 3-24 (239)
461 PF08303 tRNA_lig_kinase: tRNA 96.4 0.063 1.4E-06 49.4 12.2 132 277-428 5-146 (168)
462 cd03223 ABCD_peroxisomal_ALDP 96.4 0.026 5.7E-07 52.2 10.1 26 270-295 26-51 (166)
463 PRK08233 hypothetical protein; 96.4 0.0037 7.9E-08 58.2 4.3 31 273-303 5-36 (182)
464 TIGR02768 TraA_Ti Ti-type conj 96.4 0.01 2.2E-07 67.9 8.6 71 272-342 369-451 (744)
465 cd03230 ABC_DR_subfamily_A Thi 96.4 0.03 6.5E-07 52.1 10.3 26 270-295 25-50 (173)
466 PHA02530 pseT polynucleotide k 96.4 0.0033 7.1E-08 63.8 4.1 31 272-302 3-34 (300)
467 COG4175 ProV ABC-type proline/ 96.4 0.018 4E-07 58.0 9.1 63 328-412 180-249 (386)
468 PF01745 IPT: Isopentenyl tran 96.3 0.0054 1.2E-07 58.6 5.1 38 273-310 3-40 (233)
469 COG4608 AppF ABC-type oligopep 96.3 0.028 6E-07 55.7 10.2 25 272-296 40-64 (268)
470 cd02682 MIT_AAA_Arch MIT: doma 96.3 0.04 8.7E-07 43.9 9.2 65 9-76 5-69 (75)
471 TIGR02236 recomb_radA DNA repa 96.3 0.029 6.4E-07 57.3 10.9 36 271-306 95-139 (310)
472 PLN02199 shikimate kinase 96.3 0.0043 9.2E-08 62.5 4.5 34 271-304 102-135 (303)
473 PRK12727 flagellar biosynthesi 96.3 0.047 1E-06 59.4 12.6 25 271-295 350-374 (559)
474 COG1117 PstB ABC-type phosphat 96.3 0.023 5E-07 54.4 9.1 23 273-295 35-57 (253)
475 PRK06696 uridine kinase; Valid 96.3 0.0044 9.5E-08 60.3 4.4 36 272-307 23-61 (223)
476 PRK09519 recA DNA recombinatio 96.3 0.021 4.6E-07 64.9 10.3 75 270-344 59-152 (790)
477 PLN03187 meiotic recombination 96.3 0.037 8.1E-07 57.4 11.4 35 270-304 125-168 (344)
478 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.039 8.5E-07 53.7 10.9 22 272-293 32-53 (222)
479 PRK10078 ribose 1,5-bisphospho 96.3 0.0041 9E-08 58.6 4.0 30 272-301 3-32 (186)
480 PRK12608 transcription termina 96.3 0.013 2.8E-07 61.0 7.9 24 273-296 135-158 (380)
481 TIGR02238 recomb_DMC1 meiotic 96.3 0.037 7.9E-07 56.8 11.1 36 270-305 95-139 (313)
482 COG1134 TagH ABC-type polysacc 96.3 0.032 7E-07 54.4 10.0 24 272-295 54-77 (249)
483 PTZ00035 Rad51 protein; Provis 96.2 0.038 8.2E-07 57.3 11.3 26 270-295 117-142 (337)
484 PF13086 AAA_11: AAA domain; P 96.2 0.0061 1.3E-07 58.6 5.1 22 274-295 20-41 (236)
485 cd03227 ABC_Class2 ABC-type Cl 96.2 0.04 8.6E-07 50.8 10.2 23 272-294 22-44 (162)
486 TIGR00174 miaA tRNA isopenteny 96.2 0.013 2.8E-07 59.2 7.4 35 274-308 2-36 (287)
487 TIGR02655 circ_KaiC circadian 96.2 0.044 9.5E-07 59.7 12.0 35 269-303 19-57 (484)
488 PRK13889 conjugal transfer rel 96.2 0.015 3.3E-07 67.9 8.8 102 273-396 364-477 (988)
489 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.0093 2E-07 61.3 6.3 53 238-296 61-113 (358)
490 COG0324 MiaA tRNA delta(2)-iso 96.2 0.0062 1.4E-07 61.7 4.9 38 272-309 4-41 (308)
491 PRK10436 hypothetical protein; 96.2 0.012 2.6E-07 63.4 7.3 94 234-340 194-297 (462)
492 COG2805 PilT Tfp pilus assembl 96.2 0.012 2.7E-07 58.9 6.8 68 273-340 127-208 (353)
493 cd03213 ABCG_EPDR ABCG transpo 96.2 0.026 5.7E-07 53.6 8.9 26 270-295 34-59 (194)
494 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0054 1.2E-07 54.7 3.9 29 270-298 21-49 (133)
495 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.059 1.3E-06 49.6 10.8 23 273-295 4-26 (159)
496 PF04212 MIT: MIT (microtubule 96.1 0.084 1.8E-06 41.3 10.1 65 7-74 2-66 (69)
497 PRK10263 DNA translocase FtsK; 96.1 0.043 9.3E-07 64.8 11.8 74 333-423 1143-1218(1355)
498 PRK10875 recD exonuclease V su 96.1 0.038 8.3E-07 61.7 11.1 24 272-295 168-191 (615)
499 COG3172 NadR Predicted ATPase/ 96.1 0.014 3E-07 53.2 6.2 67 272-338 9-86 (187)
500 PRK05541 adenylylsulfate kinas 96.1 0.0084 1.8E-07 55.8 5.1 27 270-296 6-32 (176)
No 1
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-101 Score=761.26 Aligned_cols=488 Identities=56% Similarity=0.878 Sum_probs=409.5
Q ss_pred chHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 009911 6 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRAFKEVPG 85 (522)
Q Consensus 6 ~~~~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i~~~~~~f~~~~~ 85 (522)
++.+||+|+++||+|||+||||+|++||+|++.||++|+.+..|++.++||+|++|+|.+|+++|++|+.+++.|+.+.+
T Consensus 2 ~~~g~~~~ak~ar~~al~G~~d~~~~~~~g~~~~~~r~l~s~~d~~~~~k~~~~~q~l~~e~e~vk~i~~~~~~~~~a~~ 81 (491)
T KOG0738|consen 2 SLAGISENAKLAREYALLGNYDSAGIYYRGLLYLMNRYLVSTGDPYAQGKWSQVEQALTEEYELVKQIVRDLRDLKEAST 81 (491)
T ss_pred chhhHHHHHHHHHHHHHhcCcchhHHHHHhHHHHHHHHHhccCCcccchHHHHHHHHhhHHHHHHHHHHHHHHhhccccC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccCCCCCCCCCCCCC
Q 009911 86 SRRTSSPPINAKSSFVFQPLDEYPTSSGAPMDDPDVWRPPSRDTPSRRPARAGQVGMRKSPQDGAWARGATNRTGTSSRG 165 (522)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (522)
.. -+.+.+++|+.||+||++|.|. ..+++++....+..++.++.++ +.+..++..+.
T Consensus 82 ~~-------------------~~~s~~d~P~~dp~Vw~~p~p~--~~r~~~~~~kt~~~~~~~~~~~--~~~~~~~~~r~ 138 (491)
T KOG0738|consen 82 PT-------------------LKFSGHDEPPIDPDVWAKPKPV--ERRPAPASRKTRPSSPFGKKKA--PTTAASPAGRP 138 (491)
T ss_pred cc-------------------cccCCCCCCCCCccccCCCCcc--ccCCCccccccccccccCCCCC--CCCCCCCCCCC
Confidence 32 1123345688999999999873 1222222222211222222222 12222332222
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCCC-CCCC-CCCCcCcccccccCCCChhHHHHHhhhhhccCCCCCcccccCc
Q 009911 166 GKAAGPSRGNTGVRASTTGKKGTGSGKSGKA-DSAN-GDSEDGKSKKKEYEGPDPDLAAMLERDVLETSPGVRWDDVAGL 243 (522)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~di~G~ 243 (522)
.+.+.. ...+..++......+......+.+ .... ....+++.++....+++.+|++.++++|+...|+++|+||+|+
T Consensus 139 ~~~s~t-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl 217 (491)
T KOG0738|consen 139 IGKSST-QNLSTDRADSSTARETNGESKGLGNSNEQPHASLKGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGL 217 (491)
T ss_pred CCCccc-cCCCCCcccccccccccccccccccccCCcccccccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcch
Confidence 222211 111111111111111111111111 0000 1112344555666788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHH
Q 009911 244 TEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLF 323 (522)
Q Consensus 244 ~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f 323 (522)
+++|+.|+|+|++|+++|+||+++++||+||||+||||||||+||+|||++|+.+||+|+++++.++|.|++|++++.+|
T Consensus 218 ~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLF 297 (491)
T KOG0738|consen 218 HEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLF 297 (491)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhc
Q 009911 324 DLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRL 403 (522)
Q Consensus 324 ~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf 403 (522)
++|+.++|++|||||||.|++.|+..++|+.+++++++||.+|||+..... ..+.|+|+|+||.||+||++|+|||
T Consensus 298 emARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e----~~k~VmVLAATN~PWdiDEAlrRRl 373 (491)
T KOG0738|consen 298 EMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE----NSKVVMVLAATNFPWDIDEALRRRL 373 (491)
T ss_pred HHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc----cceeEEEEeccCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654 3577999999999999999999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhcccccc
Q 009911 404 EKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEI 483 (522)
Q Consensus 404 ~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~ 483 (522)
++.|+||+|+.+.|..||+++++...+.++++++.||+.++||||+||.++|++|.|++|||.+.++++++|..+.++++
T Consensus 374 EKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~ 453 (491)
T KOG0738|consen 374 EKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEP 453 (491)
T ss_pred hhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC
Q 009911 484 SKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGSA 522 (522)
Q Consensus 484 ~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg~~ 522 (522)
. .|++++||+.||.+++||++.+++++|++|+.+|||+
T Consensus 454 ~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 454 K-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred c-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 5 9999999999999999999999999999999999995
No 2
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-57 Score=433.26 Aligned_cols=295 Identities=48% Similarity=0.870 Sum_probs=267.7
Q ss_pred hHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 219 DLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.|...|...|+.+.|+|.|+||+|++.+|+.|+|+|++|+..|++|.+.+.||+++||||||||||+.||+++|++.+.+
T Consensus 114 KLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 114 KLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred HHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCC
Q 009911 299 FFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDG 378 (522)
Q Consensus 299 ~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~ 378 (522)
||.|+.++|+++|.|++++++.++|++|+.+.|+||||||||.+|+.+ ..++.+.+++++.+||.+|.++....
T Consensus 194 FFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r-~enEseasRRIKTEfLVQMqGVG~d~----- 267 (439)
T KOG0739|consen 194 FFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSR-SENESEASRRIKTEFLVQMQGVGNDN----- 267 (439)
T ss_pred eEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCC-CCCchHHHHHHHHHHHHhhhccccCC-----
Confidence 999999999999999999999999999999999999999999999887 46678899999999999999987654
Q ss_pred CcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC-CCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 379 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE-VSKDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 379 ~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~-l~~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
..|+|+++||-||.||.+++|||+++||||+|+...|..+|+.++.... ...+-|+.+|+.+|+||||+||.-+|++
T Consensus 268 --~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrD 345 (439)
T KOG0739|consen 268 --DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRD 345 (439)
T ss_pred --CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehh
Confidence 3499999999999999999999999999999999999999999987654 3356789999999999999999999999
Q ss_pred HHHHHHHHHhhcC---------ChHH-------------------HhhccccccCCCCccHHHHHHHHHhhCCCCCHHHH
Q 009911 458 ASLNGMRRKIAGK---------TRDE-------------------IKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADI 509 (522)
Q Consensus 458 A~~~a~~r~~~~~---------~~~~-------------------i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~ 509 (522)
|.|..+|+..... +++. +.....+.+-..+||+.||..+|.+.+|.|+.+++
T Consensus 346 almePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl 425 (439)
T KOG0739|consen 346 ALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDL 425 (439)
T ss_pred hhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHH
Confidence 9999998864310 1111 22233345557799999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 009911 510 EKHEKWFQEFGS 521 (522)
Q Consensus 510 ~~~~~w~~~fg~ 521 (522)
.++++|.+.||-
T Consensus 426 ~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 426 LKHEKFTEDFGQ 437 (439)
T ss_pred HHHHHHHHhhcc
Confidence 999999999994
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-51 Score=402.33 Aligned_cols=254 Identities=44% Similarity=0.705 Sum_probs=236.5
Q ss_pred HHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 223 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 223 ~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
++.-.-+++.|.++++||.|+++.++.|+|.+.+||.+|++|..++ .|++|||||||||||||+||+|+|+++++.|+.
T Consensus 136 ~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIr 215 (406)
T COG1222 136 RVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIR 215 (406)
T ss_pred hhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEE
Confidence 3444556788999999999999999999999999999999999877 888999999999999999999999999999999
Q ss_pred eehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 009911 302 VSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGS 379 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~ 379 (522)
+.++.|..+|.|+...+++.+|.+|+.++||||||||||++..+|... +......+.+-+||++|||+...+.
T Consensus 216 vvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n----- 290 (406)
T COG1222 216 VVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN----- 290 (406)
T ss_pred eccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC-----
Confidence 999999999999999999999999999999999999999999988433 4455567777899999999987654
Q ss_pred cceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 380 RKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 380 ~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
|-||++||+++.|||||+| ||++.|+||+||.+.|.+||+++.+...+..++||+.||..++|+||+||.++|.+
T Consensus 291 ---vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 291 ---VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred ---eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCC
Q 009911 458 ASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQR 502 (522)
Q Consensus 458 A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~ 502 (522)
|.|.|+|.. ...||++||.+|..++-.
T Consensus 368 AGm~AiR~~------------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 368 AGMFAIRER------------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HhHHHHHhc------------------cCeecHHHHHHHHHHHHh
Confidence 999999987 568999999999998753
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-50 Score=425.27 Aligned_cols=269 Identities=46% Similarity=0.728 Sum_probs=255.2
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.+.++.+.|+++|+||.|++++|+.|++.+.+|+.+++.|.+.+ .|++|||||||||||||++|+++|++++++|+.+.
T Consensus 421 ~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk 500 (693)
T KOG0730|consen 421 LREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK 500 (693)
T ss_pred hhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc
Confidence 45666788999999999999999999999999999999999887 88899999999999999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009911 304 SATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIV 383 (522)
Q Consensus 304 ~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~V 383 (522)
+.++.++|.|++|+.++.+|+.|+..+|+|||+||||++...|+ +..+....|++++||++|||+.... .|
T Consensus 501 gpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~-g~~~~v~~RVlsqLLtEmDG~e~~k--------~V 571 (693)
T KOG0730|consen 501 GPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG-GSSSGVTDRVLSQLLTEMDGLEALK--------NV 571 (693)
T ss_pred CHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC-CCccchHHHHHHHHHHHcccccccC--------cE
Confidence 99999999999999999999999999999999999999999997 4444889999999999999998664 39
Q ss_pred EEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009911 384 MVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 384 ivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
+|||+||+|+.||++|+| ||++.||||+||.+.|.+||+.+++...+.+++|+..||..|+||||+||.++|++|.+.
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 009911 462 GMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQE 518 (522)
Q Consensus 462 a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~ 518 (522)
++++.+. ...|+.+||++|++..+++++.+++++|++|.+.
T Consensus 652 a~~e~i~----------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 652 ALRESIE----------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HHHHhcc----------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 9999864 5689999999999999999999999999999764
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-48 Score=402.72 Aligned_cols=287 Identities=41% Similarity=0.622 Sum_probs=256.8
Q ss_pred HHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 223 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 223 ~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
...++.+-..|.|+|+||.|+++++.+|..++..|..+|+.|+..+ ..+.|||||||||||||.||+|+|++.|..|+.
T Consensus 496 SakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis 575 (802)
T KOG0733|consen 496 SAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS 575 (802)
T ss_pred chhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence 3456777889999999999999999999999999999999999765 567899999999999999999999999999999
Q ss_pred eehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcc
Q 009911 302 VSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRK 381 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 381 (522)
|...+|.++|.|++|..++.+|..|+..+|||||+||||+|++.|+... ...+.+++++||.+|||+....+
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R~g------- 647 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEERRG------- 647 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccccc-------
Confidence 9999999999999999999999999999999999999999999986544 77889999999999999986644
Q ss_pred eEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHc--cCCCCCcccHHHHHHHcC--CCcHHHHHHHH
Q 009911 382 IVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLK--TVEVSKDVDIDEVARRTD--GYSGDDLTNVC 455 (522)
Q Consensus 382 ~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~--~~~l~~~~dl~~LA~~t~--Gys~~dI~~lv 455 (522)
|.||++||+|+.+|++++| ||++.+|+++|+.++|..||+...+ ...+..++|++.||..+. ||||+||..||
T Consensus 648 -V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 648 -VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred -eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 9999999999999999999 9999999999999999999999998 677889999999999877 99999999999
Q ss_pred HHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Q 009911 456 RDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520 (522)
Q Consensus 456 ~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg 520 (522)
++|.+.++++.+...+... ..+... .....+|+.||++|+.+++|||++.|-++|+.-.+.+|
T Consensus 727 reAsi~AL~~~~~~~~~~~-~~~~~~-~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 727 REASILALRESLFEIDSSE-DDVTVR-SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HHHHHHHHHHHHhhccccC-ccccee-eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 9999999999875332110 000000 01346889999999999999999999999998887776
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-47 Score=404.41 Aligned_cols=285 Identities=39% Similarity=0.609 Sum_probs=259.6
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
..+.|+|+|+||.|++++|..|.+.+.+||.++++|....++..|||||||||||||.+|+|+|++|...|+.|...+|.
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 46789999999999999999999999999999999998877778999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchh-hHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEe
Q 009911 309 SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHE-SSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLA 387 (522)
Q Consensus 309 ~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~-~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIa 387 (522)
..|.|++|++++.+|+.||..+|||||+||+|+|+++|+.+++.. ...|++++||.+||++.... .+.|+||+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~------s~~VFViG 816 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS------SQDVFVIG 816 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC------CCceEEEe
Confidence 999999999999999999999999999999999999998876644 67899999999999998642 25599999
Q ss_pred ecCCCCCccHHHHh--hcccccccCCC-CHHHHHHHHHHHHccCCCCCcccHHHHHHHcC-CCcHHHHHHHHHHHHHHHH
Q 009911 388 ATNFPWDIDEALRR--RLEKRIYIPLP-NFESRKELIKINLKTVEVSKDVDIDEVARRTD-GYSGDDLTNVCRDASLNGM 463 (522)
Q Consensus 388 ttn~p~~ld~aL~r--Rf~~~i~i~~P-d~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~-Gys~~dI~~lv~~A~~~a~ 463 (522)
+||+|+.||++|+| ||++.+|+..+ |.+.+..+|+...++..++.++|+.++|+.+. .|||+|+..||.+|.+.|+
T Consensus 817 ATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Ai 896 (953)
T KOG0736|consen 817 ATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAI 896 (953)
T ss_pred cCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHH
Confidence 99999999999999 99999999887 56789999999999999999999999999987 5999999999999999999
Q ss_pred HHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Q 009911 464 RRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520 (522)
Q Consensus 464 ~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg 520 (522)
+|.+..+....+.... .+.....|+++||.+++++.+||+|..|+++|+--.+.|.
T Consensus 897 kR~i~~ie~g~~~~~e-~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 897 KRTIHDIESGTISEEE-QESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHhhhccccccc-cCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9998765544333322 2333678999999999999999999999999999988885
No 7
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-46 Score=385.29 Aligned_cols=299 Identities=48% Similarity=0.801 Sum_probs=272.6
Q ss_pred ccCCCChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHH
Q 009911 212 EYEGPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAV 291 (522)
Q Consensus 212 ~~~~~~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LArai 291 (522)
....++..+.+.+.++|....+++.|+|+.|++.+|+.+.+++++|+..++.|.+++.+.+++||.||||+|||+|++||
T Consensus 127 ~~~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~ai 206 (428)
T KOG0740|consen 127 KVKEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAI 206 (428)
T ss_pred hhccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHH
Confidence 45567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC
Q 009911 292 ATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 292 A~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
|.++++.|+.+++++|.++|.|+.+++++.+|..|+..+|+||||||||.++.+| ...+++..++++.++|.++++...
T Consensus 207 AsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s 285 (428)
T KOG0740|consen 207 ATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNS 285 (428)
T ss_pred HhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccC
Confidence 9999999999999999999999999999999999999999999999999999999 788899999999999999998776
Q ss_pred CCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccC-CCCCcccHHHHHHHcCCCcHHH
Q 009911 372 TGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTV-EVSKDVDIDEVARRTDGYSGDD 450 (522)
Q Consensus 372 ~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~-~l~~~~dl~~LA~~t~Gys~~d 450 (522)
... +.|+||+|||.||.+|++++|||.++++||+|+++.|..+|+.++.+. ....+.|++.|++.|+||++.|
T Consensus 286 ~~~------drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsd 359 (428)
T KOG0740|consen 286 APD------DRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSD 359 (428)
T ss_pred CCC------CeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCccccc
Confidence 543 469999999999999999999999999999999999999999999776 3445678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC
Q 009911 451 LTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGSA 522 (522)
Q Consensus 451 I~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg~~ 522 (522)
|.++|++|++..++........+ . ......++++..||..|++.+.+++|...+++|.+|..+||+.
T Consensus 360 i~~l~kea~~~p~r~~~~~~~~~---~--~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 360 ITALCKEAAMGPLRELGGTTDLE---F--IDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred HHHHHHHhhcCchhhcccchhhh---h--cchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 99999999998888765421111 1 1112368999999999999999999999999999999999974
No 8
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-44 Score=359.67 Aligned_cols=285 Identities=42% Similarity=0.723 Sum_probs=251.8
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhc--cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQG--IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~--~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
....-.|+|+||.|++.+++.|++.+.+|+.++++|.. +.+|++||||+||||||||++|+++|++.|+.|++|+.++
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 33445899999999999999999999999999999963 3478999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVL 386 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivI 386 (522)
+.++|.|+.++.++.+|..|...+|+||||||+|.++..| ...+|+....++++|...+||+..... ..|+|+
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~------~rVlVl 235 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDS------ERVLVL 235 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCC------ceEEEE
Confidence 9999999999999999999999999999999999999999 789999999999999999999987643 569999
Q ss_pred eecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 387 AATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 387 attn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
|+||+|.++|++++||+.+.++|++|+..+|..||+..++...+.+++|+..+|..|+||||.||.++|+.|+..++|..
T Consensus 236 gATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 236 GATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIREL 315 (386)
T ss_pred eCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcC----ChHHHhhcccc------ccCCCCccHHHHHHHHHhhCCCCCHHH--HHHHHHHHHHhc
Q 009911 467 IAGK----TRDEIKNMSKD------EISKDPVAMCDFEEALTKVQRSVSQAD--IEKHEKWFQEFG 520 (522)
Q Consensus 467 ~~~~----~~~~i~~~~~~------~~~~~~lt~~df~~AL~~~~~svs~~~--~~~~~~w~~~fg 520 (522)
+... +.+.+..-... ....++++++||..|+.++.+++..+. ....+.|...||
T Consensus 316 ~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~ 381 (386)
T KOG0737|consen 316 LVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYG 381 (386)
T ss_pred HHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhc
Confidence 7653 11111111111 112589999999999998887754332 356777877776
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-44 Score=373.81 Aligned_cols=268 Identities=38% Similarity=0.633 Sum_probs=238.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 231 TSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 231 ~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
..+++.|.||.|++.....|.+.+.+ +.+|+.|..++ .|++|||||||||||||+||++||.+++++|+.+++.++.+
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34589999999999999999999988 88888887655 89999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeec
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAAT 389 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIatt 389 (522)
.+.|++|+.++.+|+.|..+.||||||||||+|.++|.. ...+..++++.+||..||++..... ....|+||++|
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~----~g~~VlVIgAT 336 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKT----KGDPVLVIGAT 336 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhccccccc----CCCCeEEEecC
Confidence 999999999999999999999999999999999999864 6778899999999999999987654 34559999999
Q ss_pred CCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 390 NFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 390 n~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
|+|+.||++|+| ||++.|.+..|+..+|..||+..++++.+..++|+..||+.|.||.|+||..||.+|.+.+++|.+
T Consensus 337 nRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~l 416 (802)
T KOG0733|consen 337 NRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRIL 416 (802)
T ss_pred CCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCC------------------hHH--Hh--------------------hc----cccccCCCCccHHHHHHHHHhhCCC
Q 009911 468 AGKT------------------RDE--IK--------------------NM----SKDEISKDPVAMCDFEEALTKVQRS 503 (522)
Q Consensus 468 ~~~~------------------~~~--i~--------------------~~----~~~~~~~~~lt~~df~~AL~~~~~s 503 (522)
.... .+. |+ +. +.+.+....|.++||++||..++||
T Consensus 417 d~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPS 496 (802)
T KOG0733|consen 417 DQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPS 496 (802)
T ss_pred hcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcc
Confidence 5221 011 22 00 1123345578999999999999987
Q ss_pred C
Q 009911 504 V 504 (522)
Q Consensus 504 v 504 (522)
.
T Consensus 497 a 497 (802)
T KOG0733|consen 497 A 497 (802)
T ss_pred h
Confidence 5
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.9e-42 Score=389.00 Aligned_cols=287 Identities=44% Similarity=0.722 Sum_probs=256.6
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
......|.++|+||+|++.+|+.|.+.+.+|+.+++.|...+ .+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 442 ~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~ 521 (733)
T TIGR01243 442 EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP 521 (733)
T ss_pred hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 344557899999999999999999999999999999998754 6778999999999999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 306 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 306 ~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
++.++|.|+++..++.+|..|+...|+||||||||.|+..++.........+++++||..|+++.... .++|
T Consensus 522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~--------~v~v 593 (733)
T TIGR01243 522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS--------NVVV 593 (733)
T ss_pred HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC--------CEEE
Confidence 99999999999999999999999999999999999999988766566677899999999999876543 3999
Q ss_pred EeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009911 386 LAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGM 463 (522)
Q Consensus 386 Iattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~ 463 (522)
|+|||+|+.||++++| ||++.|++|+|+.++|.+||+.+++...+..++++..||..++||||+||.++|++|.+.++
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~ 673 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAAL 673 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999888899999999999999999999999999999999
Q ss_pred HHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC
Q 009911 464 RRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 521 (522)
Q Consensus 464 ~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg~ 521 (522)
++.+.....+.+.....+.....+|+++||.+||++++|+++.++++.|++|.++|+.
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 674 RESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 9876543322222222222335689999999999999999999999999999999985
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-42 Score=352.71 Aligned_cols=260 Identities=39% Similarity=0.626 Sum_probs=231.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~ 311 (522)
.+++|+|+-|++++|++|.|.+.+ |..|.-|..+ ++-++||||+||||||||+||||+|.+.+++||..+.+++-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 489999999999999999998877 6777777754 47779999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC
Q 009911 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF 391 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~ 391 (522)
.|...+.++.+|..|+..+||||||||||++.++|.....+ ..++.+++||..||++..+.+ |+||++||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeG--------iIvigATNf 448 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEG--------IIVIGATNF 448 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCc--------eEEEeccCC
Confidence 99999999999999999999999999999999999766555 889999999999999997755 999999999
Q ss_pred CCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 009911 392 PWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAG 469 (522)
Q Consensus 392 p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~ 469 (522)
|+.||++|.| ||+++|.+|.||...|.+||+.++.++.+..++|+.-||+-|.||+|+||.++|+.|++.+....
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--- 525 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--- 525 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC---
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999988877655
Q ss_pred CChHHHhhccccccCCCCccHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHHhc
Q 009911 470 KTRDEIKNMSKDEISKDPVAMCDFEEALTKV-----QRSVSQADIEKHEKWFQEFG 520 (522)
Q Consensus 470 ~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~-----~~svs~~~~~~~~~w~~~fg 520 (522)
...|+|.||+-|-.++ +++...++..+-..-|.|=|
T Consensus 526 ---------------a~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~G 566 (752)
T KOG0734|consen 526 ---------------AEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGG 566 (752)
T ss_pred ---------------cccccHHHHhhhhhheeecccccccccChhhhhhhhhhccC
Confidence 5689999999987764 34444444444444444433
No 12
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-40 Score=311.97 Aligned_cols=261 Identities=37% Similarity=0.598 Sum_probs=239.4
Q ss_pred CCChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHH
Q 009911 215 GPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~ 293 (522)
...+++..++....++..|.-.++||.|++..++.|.+++++|+.+++.|..++ +|++|||+|||||||||++|++.|.
T Consensus 148 tLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 148 TLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 355677778888888999999999999999999999999999999999999876 8889999999999999999999999
Q ss_pred HhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCC
Q 009911 294 ECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 294 ~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
..+.+|+.+....|...|.|+..+.++..|..|+..+|+||||||+|.|..+|-.+ .......+.+-+||+++|++..
T Consensus 228 qT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss 307 (424)
T KOG0652|consen 228 QTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS 307 (424)
T ss_pred hccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999887432 2233445666788999999987
Q ss_pred CCCCCCCCcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHH
Q 009911 372 TGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGD 449 (522)
Q Consensus 372 ~~~~~~~~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~ 449 (522)
... |-||++||+.+-|||+|+| |+++.|.||.|+.+.|.+|++++.++....+++++++||+.|++|.|+
T Consensus 308 ~~~--------vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGA 379 (424)
T KOG0652|consen 308 DDR--------VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGA 379 (424)
T ss_pred ccc--------eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCch
Confidence 654 9999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 450 DLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 450 dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
+...+|-+|.|.++||. ...|+.+||.+++..++
T Consensus 380 QcKAVcVEAGMiALRr~------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 380 QCKAVCVEAGMIALRRG------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred hheeeehhhhHHHHhcc------------------cccccHHHHHHHHHHHH
Confidence 99999999999999987 56899999999988765
No 13
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=317.93 Aligned_cols=253 Identities=38% Similarity=0.645 Sum_probs=231.1
Q ss_pred HHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 223 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 223 ~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
++.-.-+++.|.-++.||.|++..++.|++.+.+||.+|++|..++ .|++||+|||+||||||.||+|+|+...++|+.
T Consensus 170 mv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlR 249 (440)
T KOG0726|consen 170 MVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLR 249 (440)
T ss_pred cceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhh
Confidence 3334456778899999999999999999999999999999999876 788999999999999999999999999999999
Q ss_pred eehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC--CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 009911 302 VSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG--ASGEHESSRRVKSELLVQVDGVNNTGTNEDGS 379 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~--~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~ 379 (522)
+-.++|..+|.|+..++++++|..|..++|+|+||||||++..+|- +++......+.+-+||++++++...+.
T Consensus 250 vvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD----- 324 (440)
T KOG0726|consen 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD----- 324 (440)
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC-----
Confidence 9999999999999999999999999999999999999999998873 233344455666689999999987654
Q ss_pred cceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 380 RKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 380 ~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
|-||.+||..+.|||+|.| |+++.|.||.||...+..||.++.....+..+++++.|...-+.+||+||.++|.+
T Consensus 325 ---vKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 325 ---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred ---eEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 458 ASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 458 A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
|.++++|.. ...++++||..|.+++-
T Consensus 402 aGllAlRer------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 402 AGLLALRER------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred HhHHHHHHH------------------HhhccHHHHHHHHHHHH
Confidence 999999987 46899999999988763
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=305.78 Aligned_cols=246 Identities=39% Similarity=0.640 Sum_probs=227.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
++.|.+++.||.|++-.|+.+++++.+||.+.++++.++ .|++|||||||||||||+||+++|+..-+.|+.+..+++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 456789999999999999999999999999999999776 7889999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC--CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 009911 309 SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG--ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVL 386 (522)
Q Consensus 309 ~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~--~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivI 386 (522)
.+|.|+...+++.+|..|+..+|+||||||||++..+|- ..+......+++-+||++||++..... |-||
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n--------vkvi 298 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN--------VKVI 298 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc--------eEEE
Confidence 999999999999999999999999999999999998873 234556677888999999999987644 9999
Q ss_pred eecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009911 387 AATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMR 464 (522)
Q Consensus 387 attn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~ 464 (522)
.+||+.+.+|++|+| |+++.|.||+||..+++-+|.....+..+.+++|++.+..+-+..|++||..+|++|.|.+.|
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 465 RKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 465 r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
.. .-.|...||++|.+..-
T Consensus 379 ~n------------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 379 EN------------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred hc------------------ceeeeHHHHHHHHHhhc
Confidence 76 34678889999988643
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-39 Score=346.20 Aligned_cols=265 Identities=49% Similarity=0.782 Sum_probs=240.0
Q ss_pred hHHHHHhh-----hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhc-cCCCCceEEEEcCCCCcHHHHHHHHH
Q 009911 219 DLAAMLER-----DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQG-IRRPWKGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 219 ~~~e~~~~-----~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~-~~~~~~~vLL~GppGtGKT~LAraiA 292 (522)
++.+.+++ .+....+.++|+|++|++++++.+.+.+.+|+..++.|.. ..++++++|||||||||||+||+++|
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 218 DFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred HHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHH
Confidence 34445544 5667789999999999999999999999999999999886 45677899999999999999999999
Q ss_pred HHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC
Q 009911 293 TECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT 372 (522)
Q Consensus 293 ~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~ 372 (522)
++++.+|+.+..+++.++|.|++++.++.+|..|+...||||||||||+++..++... +....+++++|+..|+++...
T Consensus 298 ~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 298 LESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred hhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999885432 233379999999999988866
Q ss_pred CCCCCCCcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCC--CCCcccHHHHHHHcCCCcH
Q 009911 373 GTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVE--VSKDVDIDEVARRTDGYSG 448 (522)
Q Consensus 373 ~~~~~~~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~--l~~~~dl~~LA~~t~Gys~ 448 (522)
.. |+||++||.|+.+|++++| ||++.|+||+||.++|.+||+.++.... +..++++..|++.++||++
T Consensus 377 ~~--------v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sg 448 (494)
T COG0464 377 EG--------VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSG 448 (494)
T ss_pred Cc--------eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCH
Confidence 44 9999999999999999999 9999999999999999999999998544 4578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 009911 449 DDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKW 515 (522)
Q Consensus 449 ~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w 515 (522)
+||..+|++|.+.++++.. ..+||++||..|++...|+++ |++|
T Consensus 449 adi~~i~~ea~~~~~~~~~-----------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 449 ADIAALVREAALEALREAR-----------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 9999999999999999864 468999999999999999988 8887
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=301.28 Aligned_cols=255 Identities=38% Similarity=0.621 Sum_probs=233.7
Q ss_pred HHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 223 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 223 ~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
++.-..+++.|..+++=|.|++..++.+++.+.+|..+|++|..++ ..++|||||||||||||.||+++|+...+.|+.
T Consensus 132 LVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~fir 211 (404)
T KOG0728|consen 132 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 211 (404)
T ss_pred hhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEE
Confidence 4455678889999999999999999999999999999999999766 456899999999999999999999999999999
Q ss_pred eehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 009911 302 VSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGS 379 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~ 379 (522)
++.+++..+|.|+...+++.+|-+|+.++|+|||+||||++.+.|..+ +.+....+.+-+||+++|++....
T Consensus 212 vsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk------ 285 (404)
T KOG0728|consen 212 VSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK------ 285 (404)
T ss_pred echHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc------
Confidence 999999999999999999999999999999999999999999887533 334455677788999999988654
Q ss_pred cceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 380 RKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 380 ~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
++-||.+||+.+-+|++|+| |+++.|.||.|+.+.|.+||+++.+...+...+++..+|+...|.||+++..+|.+
T Consensus 286 --nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 286 --NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred --ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 49999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCC
Q 009911 458 ASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRS 503 (522)
Q Consensus 458 A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~s 503 (522)
|.|.++|.. ...+|.+||+-|+.++-..
T Consensus 364 agm~alrer------------------rvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 364 AGMYALRER------------------RVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred hhHHHHHHh------------------hccccHHHHHHHHHHHHhc
Confidence 999999977 5689999999999987543
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=331.92 Aligned_cols=253 Identities=38% Similarity=0.627 Sum_probs=226.5
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
....+...|.++|+||+|++.+++.|++.+.+|+..+++|...+ .+++++||+||||||||++|+++|++++.+|+.+.
T Consensus 132 ~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 132 QLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred hhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 33445668999999999999999999999999999999998765 67789999999999999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCCcc
Q 009911 304 SATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGSRK 381 (522)
Q Consensus 304 ~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 381 (522)
++.+..+|.|+.+..++.+|..|+...|+||||||||.++.++... +......+++..|+..++++....
T Consensus 212 ~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-------- 283 (398)
T PTZ00454 212 GSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-------- 283 (398)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC--------
Confidence 9999999999999999999999999999999999999998776322 223345677788899998776543
Q ss_pred eEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 009911 382 IVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 382 ~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
.++||++||+++.+|++++| ||++.|+|+.|+.++|..||+.++....+..++++..||..++|||++||.++|++|.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 38999999999999999998 9999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCC
Q 009911 460 LNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRS 503 (522)
Q Consensus 460 ~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~s 503 (522)
+.++++. ...|+++||.+|+.++...
T Consensus 364 ~~A~r~~------------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 364 MQAVRKN------------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHcC------------------CCccCHHHHHHHHHHHHhc
Confidence 9999875 4589999999999997543
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.9e-39 Score=303.35 Aligned_cols=242 Identities=34% Similarity=0.500 Sum_probs=215.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~ 311 (522)
.++++|+|++|++++|+..+-.+.+ |..|+.|.... +++||+|||||||||++|+++|++..++|+.+.++.|.+.+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 4578999999999999987766654 56666665543 47999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC
Q 009911 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF 391 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~ 391 (522)
.|+....++.+|+.|+..+|||+||||+|+|.-.|.-..-......+++.||..||++..+.+ |+.||+||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG--------VvtIaaTN~ 263 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG--------VVTIAATNR 263 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc--------eEEEeecCC
Confidence 999999999999999999999999999999987775554455667889999999999986644 999999999
Q ss_pred CCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHH-HHHHHHHHHHHHHhhcC
Q 009911 392 PWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTN-VCRDASLNGMRRKIAGK 470 (522)
Q Consensus 392 p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~-lv~~A~~~a~~r~~~~~ 470 (522)
|+.||+++++||...|.|.+|+.++|..|++.+.+.+.+.-+.++..|+..+.|+|++||.. +++.|.+.++...
T Consensus 264 p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---- 339 (368)
T COG1223 264 PELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---- 339 (368)
T ss_pred hhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----
Confidence 99999999999999999999999999999999999999998999999999999999999986 6777777666644
Q ss_pred ChHHHhhccccccCCCCccHHHHHHHHHhhCC
Q 009911 471 TRDEIKNMSKDEISKDPVAMCDFEEALTKVQR 502 (522)
Q Consensus 471 ~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~ 502 (522)
...|+.+||+.||++.++
T Consensus 340 --------------~e~v~~edie~al~k~r~ 357 (368)
T COG1223 340 --------------REKVEREDIEKALKKERK 357 (368)
T ss_pred --------------hhhhhHHHHHHHHHhhcc
Confidence 568999999999997553
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=344.37 Aligned_cols=245 Identities=43% Similarity=0.681 Sum_probs=224.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
+....|+|.|++|++++|++|.|+|.+ |.+|+.|+.++ ++++|+||+||||||||.||+|+|.+.|+||+.++++++.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 334579999999999999999999987 78888888665 8889999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC---CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 309 SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG---ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 309 ~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~---~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
..+.|.....++.+|..|+..+||||||||||.+...++ ..+.+......+++||..||++..... |+|
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~--------vi~ 453 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG--------VIV 453 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc--------EEE
Confidence 999999899999999999999999999999999998884 335566677889999999999976543 999
Q ss_pred EeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 386 LAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 386 Iattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
+++||+++-||++|+| ||++.|+++.|+...|.+|++.+++...+. +++++..||.+|.||+|+||.++|++|.+.+
T Consensus 454 ~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a 533 (774)
T KOG0731|consen 454 LAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLA 533 (774)
T ss_pred EeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHH
Confidence 9999999999999999 999999999999999999999999999885 7899999999999999999999999999999
Q ss_pred HHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 463 MRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 463 ~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
.|+. ...|+..||..|++++-
T Consensus 534 ~r~~------------------~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 534 ARKG------------------LREIGTKDLEYAIERVI 554 (774)
T ss_pred HHhc------------------cCccchhhHHHHHHHHh
Confidence 9987 56899999999999643
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.6e-37 Score=328.56 Aligned_cols=255 Identities=24% Similarity=0.347 Sum_probs=221.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWR 312 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~ 312 (522)
+.++|+||+|++.+|+.|.+..... .......+..+++||||+||||||||++|+++|++++.+|+.++++.+.++|.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 5789999999999999998754321 11111222356789999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC
Q 009911 313 GESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP 392 (522)
Q Consensus 313 g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p 392 (522)
|+++..++.+|..|+..+||||||||||.++..+...++.....+++..|+..|+... ..|+||+|||++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~----------~~V~vIaTTN~~ 370 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK----------SPVFVVATANNI 370 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC----------CceEEEEecCCh
Confidence 9999999999999999999999999999998876555666778899999999887422 238999999999
Q ss_pred CCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCC--CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhh
Q 009911 393 WDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEV--SKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIA 468 (522)
Q Consensus 393 ~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l--~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~ 468 (522)
+.||++++| ||++.|+|+.|+.++|.+||+.++..... ..+.++..||..|+||||+||.++|.+|...++.+
T Consensus 371 ~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~--- 447 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE--- 447 (489)
T ss_pred hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc---
Confidence 999999998 99999999999999999999999987643 24789999999999999999999999998777653
Q ss_pred cCChHHHhhccccccCCCCccHHHHHHHHHhhCCC--CCHHHHHHHHHHHHH
Q 009911 469 GKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRS--VSQADIEKHEKWFQE 518 (522)
Q Consensus 469 ~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~s--vs~~~~~~~~~w~~~ 518 (522)
..+++.+||..|+.++.|+ ...++++.+.+|...
T Consensus 448 ----------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 448 ----------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred ----------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 3579999999999999986 588899999999864
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.8e-37 Score=320.99 Aligned_cols=257 Identities=43% Similarity=0.680 Sum_probs=226.3
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
....+...|.+.|+||+|++++++.|.+++.+|+.+++.|...+ .++++|||+||||||||++|+++|++++.+|+.++
T Consensus 118 ~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~ 197 (389)
T PRK03992 118 QAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 197 (389)
T ss_pred heeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEee
Confidence 34446678899999999999999999999999999999998765 67789999999999999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc--hhhHHHHHHHHHHHhhhcCCCCCCCCCCcc
Q 009911 304 SATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE--HESSRRVKSELLVQVDGVNNTGTNEDGSRK 381 (522)
Q Consensus 304 ~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~--~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 381 (522)
++.+...|.|+.+..++.+|..++...|+||||||||.++..+..... .....+.+..|+..++++....
T Consensus 198 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~-------- 269 (389)
T PRK03992 198 GSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG-------- 269 (389)
T ss_pred hHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC--------
Confidence 999999999999999999999999999999999999999877643321 2233455567777777665432
Q ss_pred eEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 009911 382 IVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 382 ~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
.++||+|||.++.+|++++| ||++.|+|+.|+.++|.+||+.++....+..++++..||..++||+++||..+|++|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 38999999999999999998 9999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHH
Q 009911 460 LNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQA 507 (522)
Q Consensus 460 ~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~ 507 (522)
+.++++. ...|+++||.+|+.+++++..++
T Consensus 350 ~~a~~~~------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 350 MFAIRDD------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHcC------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 9998864 45799999999999998765443
No 22
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=320.89 Aligned_cols=269 Identities=36% Similarity=0.605 Sum_probs=230.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~ 311 (522)
..++|+||.|+.++|+.|.+.+.+|-..|.+|...+ +-..|||||||||||||.||.++|..++..|+.+.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 459999999999999999999999999999999765 5557999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC
Q 009911 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF 391 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~ 391 (522)
.|.+|..++.+|..|+..+|||||+||+|+++++|+-. ......|++++||.+|||...-.+ |.|+|+|.+
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Egl~G--------V~i~aaTsR 812 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEGLDG--------VYILAATSR 812 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhccccccce--------EEEEEecCC
Confidence 99999999999999999999999999999999998632 345678999999999999876544 999999999
Q ss_pred CCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 009911 392 PWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAG 469 (522)
Q Consensus 392 p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~ 469 (522)
|+.+|+||+| |+++.++.+.|+..+|.+|++.+.....+..++|++.+|.+|+||||+||..++-+|.+.+.++.+..
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999999999998899999999999999999999999999999999999988754
Q ss_pred CChHHHhhccccccCCCCccHHHHHHHH--HhhCCCCCHHHHHHHHHHHHHh
Q 009911 470 KTRDEIKNMSKDEISKDPVAMCDFEEAL--TKVQRSVSQADIEKHEKWFQEF 519 (522)
Q Consensus 470 ~~~~~i~~~~~~~~~~~~lt~~df~~AL--~~~~~svs~~~~~~~~~w~~~f 519 (522)
.+.+. . ..-++...+..-. .+.+++.+.-+-.++-+-+.+|
T Consensus 893 ~~~~~--------~-~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~ 935 (952)
T KOG0735|consen 893 EDEEG--------V-VPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQF 935 (952)
T ss_pred cCccc--------c-CCccchhhhhhhhhccCCCccccccchhhhhhHHHhh
Confidence 33111 0 1113333333222 3556666665555555544444
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=319.54 Aligned_cols=254 Identities=37% Similarity=0.626 Sum_probs=225.7
Q ss_pred HHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 222 AMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 222 e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
.++....+++.|.++|+||+|++..++.|.+++.+|+.++++|...+ .++++|||+||||||||++|+++|++++.+|+
T Consensus 167 ~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 167 PLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred hhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 34444557788999999999999999999999999999999998765 67789999999999999999999999999999
Q ss_pred EeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCC
Q 009911 301 NVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDG 378 (522)
Q Consensus 301 ~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~ 378 (522)
.+..+.+...|.|+....++.+|..|+...|+||||||||.++.++... +......+.+..||..++++....
T Consensus 247 ~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~----- 321 (438)
T PTZ00361 247 RVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG----- 321 (438)
T ss_pred EEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC-----
Confidence 9999999999999999999999999999999999999999999776422 222234556677888888775432
Q ss_pred CcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 379 SRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 379 ~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
.+.||++||.++.+|++++| ||++.|+|+.|+.++|.+||+.++....+..++++..++..++|||++||.++|+
T Consensus 322 ---~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 322 ---DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred ---CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 38999999999999999997 9999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 457 DASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 457 ~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
+|.+.|+++. ...|+.+||.+|+.++.
T Consensus 399 eA~~~Alr~~------------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 399 EAGLLALRER------------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHhc------------------CCccCHHHHHHHHHHHH
Confidence 9999999876 45799999999999874
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-37 Score=291.35 Aligned_cols=255 Identities=38% Similarity=0.623 Sum_probs=229.8
Q ss_pred HHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 220 LAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
+...+.-.-+++.|.+++.|+.|..+.++.|++.+.+||.+|+.|-.++ .|++|||||||||||||.+|+++|+..++.
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 3334445557788999999999999999999999999999999998776 788999999999999999999999999999
Q ss_pred EEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC---CCchhhHHHHHHHHHHHhhhcCCCCCC
Q 009911 299 FFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA---SGEHESSRRVKSELLVQVDGVNNTGTN 375 (522)
Q Consensus 299 ~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~---~~~~~~~~~~~~~Ll~~ld~~~~~~~~ 375 (522)
|+.+-.++|..+|.|+...+++.+|++|+....||||+||||++.+.|-. .+++ ...+.+-+|++++|++...+.
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdn-evqrtmleli~qldgfdprgn- 316 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDN-EVQRTMLELINQLDGFDPRGN- 316 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcH-HHHHHHHHHHHhccCCCCCCC-
Confidence 99999999999999999999999999999999999999999999887632 3333 345556788899999887654
Q ss_pred CCCCcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHH
Q 009911 376 EDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTN 453 (522)
Q Consensus 376 ~~~~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~ 453 (522)
+-|+.+||+|+.||++|+| |+++.+.|.+||.+.|..||+++.+...+..++-++-||+.+..-+|++|+.
T Consensus 317 -------ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirs 389 (435)
T KOG0729|consen 317 -------IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRS 389 (435)
T ss_pred -------eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHH
Confidence 8999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 454 VCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 454 lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
+|.+|.|.++|.. ....|..||.+|+.++-
T Consensus 390 vcteagmfairar------------------rk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 390 VCTEAGMFAIRAR------------------RKVATEKDFLDAVNKVV 419 (435)
T ss_pred HHHHhhHHHHHHH------------------hhhhhHHHHHHHHHHHH
Confidence 9999999998876 34688899999988763
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-36 Score=321.39 Aligned_cols=242 Identities=43% Similarity=0.666 Sum_probs=223.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhh-ccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ-GIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK 310 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~-~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~ 310 (522)
...++|.|++|.+++|+.|.|.+.+ |..|.-|+ -+.+.++||||+||||||||+||+++|.+.++||+.++.+++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4579999999999999999999887 55555555 445888999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC--CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee
Q 009911 311 WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA 388 (522)
Q Consensus 311 ~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~--~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat 388 (522)
|.|.....++.+|..|+..+||||||||||++...|+. .+.+..-...+++||..||++..+.. |+||++
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g--------viviaa 294 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG--------VIVIAA 294 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc--------eEEEec
Confidence 99999999999999999999999999999999988853 45677778899999999999985433 999999
Q ss_pred cCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 389 TNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 389 tn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
||+|+-+|++|+| ||++.|.++.||...|++|++.+++...+..++|+..+|+.|.||+++|+.+++++|.+.+.|+.
T Consensus 295 TNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n 374 (596)
T COG0465 295 TNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN 374 (596)
T ss_pred CCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhcCChHHHhhccccccCCCCccHHHHHHHHHhh
Q 009911 467 IAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKV 500 (522)
Q Consensus 467 ~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~ 500 (522)
...|++.||.+|+.++
T Consensus 375 ------------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 ------------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred ------------------CeeEeccchHHHHHHH
Confidence 5689999999999986
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.5e-35 Score=318.96 Aligned_cols=264 Identities=42% Similarity=0.648 Sum_probs=226.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 231 TSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 231 ~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
..+.++|+||+|++++++.|.+.+.. +..++.|... ..+++++||+||||||||++|+++|++++.+|+.++++.+..
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 35689999999999999999998876 6677766643 466789999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEe
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLA 387 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIa 387 (522)
.+.|..+..++.+|..++...|+||||||||.++..+... ..+.....+++.||..|+++..... |+||+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~--------v~vI~ 198 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG--------VIVIA 198 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC--------eEEEE
Confidence 9999999999999999999999999999999999876532 2344556788999999998865433 99999
Q ss_pred ecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 009911 388 ATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRR 465 (522)
Q Consensus 388 ttn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r 465 (522)
|||.|+.+|++++| ||++.|+++.|+.++|.+||+.++....+..++++..+|..+.||+++||.++|++|...+.++
T Consensus 199 aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 199 ATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK 278 (495)
T ss_pred ecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999998 9999999999999999999999998887778899999999999999999999999998877665
Q ss_pred HhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCC-----CCCHHHHHHHHHHHHHhcC
Q 009911 466 KIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQR-----SVSQADIEKHEKWFQEFGS 521 (522)
Q Consensus 466 ~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~-----svs~~~~~~~~~w~~~fg~ 521 (522)
. ..+|+.+||..|+.++.. .....+.++...++.|.|.
T Consensus 279 ~------------------~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGh 321 (495)
T TIGR01241 279 N------------------KTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGH 321 (495)
T ss_pred C------------------CCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhH
Confidence 4 458999999999998642 2222344555666666653
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=7.2e-34 Score=296.44 Aligned_cols=248 Identities=46% Similarity=0.743 Sum_probs=217.5
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
..+...|.+.|+||+|++++++.|.+++.+|+..+++|...+ .+++++||+||||||||++|+++|++++.+|+.+.+.
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 335567899999999999999999999999999999888654 6778999999999999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009911 306 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIV 383 (522)
Q Consensus 306 ~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~V 383 (522)
.+...+.|.....++.+|..++...|+||||||+|.++..+.... ......+.+..++..++++.... .+
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~--------~v 262 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG--------NV 262 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC--------CE
Confidence 999999999999999999999999999999999999987654322 12223455566777777654332 38
Q ss_pred EEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009911 384 MVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 384 ivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
.||+|||.++.+|+++++ ||++.|+|+.|+.++|.+||+.++....+..++++..|+..++||+++||..+|++|.+.
T Consensus 263 ~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~ 342 (364)
T TIGR01242 263 KVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMF 342 (364)
T ss_pred EEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998 999999999999999999999999888888889999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhh
Q 009911 462 GMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKV 500 (522)
Q Consensus 462 a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~ 500 (522)
++++. ...|+.+||.+|+.++
T Consensus 343 a~~~~------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 343 AIREE------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHhC------------------CCccCHHHHHHHHHHh
Confidence 98875 4689999999999875
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=5.7e-33 Score=296.01 Aligned_cols=255 Identities=33% Similarity=0.541 Sum_probs=210.5
Q ss_pred HhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCc----
Q 009911 224 LERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTT---- 298 (522)
Q Consensus 224 ~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~---- 298 (522)
+...+++..|+++|+||+|++..++.|++.+.+|+.++++|...+ .+++++|||||||||||++|+++|++++.+
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 556678889999999999999999999999999999999998644 567899999999999999999999998654
Q ss_pred ------EEEeehhhhhhhhhchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 299 ------FFNVSSATLASKWRGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 299 ------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
|+.+....+..+|.|+++..++.+|+.++.. .|+||||||+|.++..++....++..+.+++.||..|++
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 6677888889999999999999999988764 699999999999998876555556667888999999998
Q ss_pred cCCCCCCCCCCcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHcc-CCCC---------CcccH
Q 009911 369 VNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKT-VEVS---------KDVDI 436 (522)
Q Consensus 369 ~~~~~~~~~~~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~-~~l~---------~~~dl 436 (522)
+.... .|+||+|||.++.||++|+| ||++.|+|+.|+.++|.+||+.++.. +.+. ...++
T Consensus 328 l~~~~--------~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~ 399 (512)
T TIGR03689 328 VESLD--------NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATA 399 (512)
T ss_pred cccCC--------ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHH
Confidence 86543 39999999999999999999 99999999999999999999998864 2221 11122
Q ss_pred HHHHHH-----------------------------cCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCC
Q 009911 437 DEVARR-----------------------------TDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDP 487 (522)
Q Consensus 437 ~~LA~~-----------------------------t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~ 487 (522)
..++.. .+.+||++|.++|..|...++++.+.. ....
T Consensus 400 ~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~--------------~~~~ 465 (512)
T TIGR03689 400 AALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG--------------GQVG 465 (512)
T ss_pred HHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc--------------CCcC
Confidence 222222 456788888888888888888776521 1458
Q ss_pred ccHHHHHHHHHhh
Q 009911 488 VAMCDFEEALTKV 500 (522)
Q Consensus 488 lt~~df~~AL~~~ 500 (522)
|+++|+..|+..-
T Consensus 466 ~~~~~l~~a~~~e 478 (512)
T TIGR03689 466 LRIEHLLAAVLDE 478 (512)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999863
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-34 Score=275.51 Aligned_cols=253 Identities=37% Similarity=0.626 Sum_probs=224.2
Q ss_pred HHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 223 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 223 ~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
++-+...+...+++|+.+.|+..+.+.|++-+.+|+..+++|...+ .|+++++||||||+|||++|++||..+|+.|+.
T Consensus 117 ~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~ 196 (388)
T KOG0651|consen 117 LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK 196 (388)
T ss_pred HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEE
Confidence 5556666667789999999999999999999999999999999855 788999999999999999999999999999999
Q ss_pred eehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC--CCchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 009911 302 VSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGS 379 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~--~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~ 379 (522)
+.++.+.++|.|++.+++++.|..|+.+.||||||||||++.+.+.. ...+....+.+-+|+++|+++.....
T Consensus 197 v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~r----- 271 (388)
T KOG0651|consen 197 VVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHR----- 271 (388)
T ss_pred eeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhccc-----
Confidence 99999999999999999999999999999999999999999987732 12233444555566777777665443
Q ss_pred cceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 380 RKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 380 ~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
|-+|+|||+|+.|+++|+| |+++.+++|+|+...|..|++.+...+.....+|.+.+.+.++||.++|++++|++
T Consensus 272 ---Vk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tE 348 (388)
T KOG0651|consen 272 ---VKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTE 348 (388)
T ss_pred ---ccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhccc
Confidence 9999999999999999999 99999999999999999999999888888888999999999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 458 ASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 458 A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
|-+.+.+.. ...+-++||..++.+..
T Consensus 349 ag~Fa~~~~------------------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 349 AGMFAIPEE------------------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred ccccccchh------------------hHHHhHHHHHHHHHHHH
Confidence 988777754 45788999999988765
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=9.3e-33 Score=303.25 Aligned_cols=241 Identities=39% Similarity=0.652 Sum_probs=212.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~ 311 (522)
..++|+||+|++++++.|.+.+.. +..++.|... ...+++|||+||||||||++|+++|.+++.+|+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999998766 5666666644 35678999999999999999999999999999999999998888
Q ss_pred hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC--CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeec
Q 009911 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAAT 389 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~--~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIatt 389 (522)
.|.....++.+|..++...|+||||||||.++..++. .+.+.....++..||..|+++.... .|+||++|
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~--------~ViVIaaT 328 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK--------GVIVIAAT 328 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC--------CeeEEEec
Confidence 8888888999999999999999999999999877643 2334556678889999998876443 39999999
Q ss_pred CCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 390 NFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 390 n~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
|+++.+|++++| ||++.|.|+.|+.++|.+||+.++....+..++++..||..+.||+++||.++|++|.+.+.++.
T Consensus 329 N~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~- 407 (638)
T CHL00176 329 NRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK- 407 (638)
T ss_pred CchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-
Confidence 999999999998 99999999999999999999999988877888999999999999999999999999988887765
Q ss_pred hcCChHHHhhccccccCCCCccHHHHHHHHHhh
Q 009911 468 AGKTRDEIKNMSKDEISKDPVAMCDFEEALTKV 500 (522)
Q Consensus 468 ~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~ 500 (522)
...|+++||.+|+.++
T Consensus 408 -----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------------CCCcCHHHHHHHHHHH
Confidence 4579999999999986
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=7e-32 Score=299.16 Aligned_cols=261 Identities=38% Similarity=0.597 Sum_probs=223.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhc-cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQG-IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWR 312 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~-~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~ 312 (522)
...|+|+.|++.+++.|.+.+.++ ..+..+.. ....++++||+||||||||++++++|++++.+|+.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 467999999999999999988763 34444443 2355679999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC--CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecC
Q 009911 313 GESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATN 390 (522)
Q Consensus 313 g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~--~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn 390 (522)
+.....++.+|..++...|+||||||||.++..++. .+.+.....+++.||..|+++.... .|+||+|||
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~--------~vivIaaTN 298 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE--------GIIVIAATN 298 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC--------CeeEEEecC
Confidence 999899999999999999999999999999987754 2344556778899999999886543 399999999
Q ss_pred CCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhh
Q 009911 391 FPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIA 468 (522)
Q Consensus 391 ~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~ 468 (522)
.|+.+|++++| ||++.|+|+.|+.++|.+||+.++....+..++++..||+.+.|||++||.++|++|...+.++.
T Consensus 299 ~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~-- 376 (644)
T PRK10733 299 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-- 376 (644)
T ss_pred ChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 99999999998 99999999999999999999999999988889999999999999999999999999999888764
Q ss_pred cCChHHHhhccccccCCCCccHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHhcC
Q 009911 469 GKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSV-----SQADIEKHEKWFQEFGS 521 (522)
Q Consensus 469 ~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~sv-----s~~~~~~~~~w~~~fg~ 521 (522)
...|+++||.+|+.++..+. ...+.+++...+.|+|.
T Consensus 377 ----------------~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gh 418 (644)
T PRK10733 377 ----------------KRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGH 418 (644)
T ss_pred ----------------CCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHH
Confidence 46899999999998764332 22334556666667664
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-32 Score=287.93 Aligned_cols=222 Identities=42% Similarity=0.745 Sum_probs=208.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~ 311 (522)
+++. +++.|+......+++.+.+|+..+..+...+ .+++++|+|||||||||+++++||++.++.++.+++..+..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 8899999999999999999999999998665 7779999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhC-CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecC
Q 009911 312 RGESERMVRCLFDLARAYA-PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATN 390 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn 390 (522)
.|+++..++.+|+.|..++ |++|||||||.+++++..... ..+++..+|+..|+++..... ++||++||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~~~--------vivl~atn 328 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPDAK--------VIVLAATN 328 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCcCc--------EEEEEecC
Confidence 9999999999999999999 999999999999998754433 788999999999999985543 99999999
Q ss_pred CCCCccHHHHh-hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 009911 391 FPWDIDEALRR-RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRR 465 (522)
Q Consensus 391 ~p~~ld~aL~r-Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r 465 (522)
+|..||++++| ||++.+.+..|+..+|..|++.+++.+.+..++++..+|..+.||+|+||..+|++|.+.+.++
T Consensus 329 rp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 329 RPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR 404 (693)
T ss_pred CccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh
Confidence 99999999999 9999999999999999999999999999888899999999999999999999999999999887
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=5e-31 Score=297.82 Aligned_cols=264 Identities=41% Similarity=0.683 Sum_probs=228.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK 310 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~ 310 (522)
.+.++|+||+|++.+++.|.+++.+|+.++++|...+ .+++++||+||||||||+||+++|++++.+|+.+++..+.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4789999999999999999999999999999998765 667899999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecC
Q 009911 311 WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATN 390 (522)
Q Consensus 311 ~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn 390 (522)
+.|..+..++.+|+.+....|+||||||||.++..+... ..+...+++..|+..|+++.... .++||++||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~~~--------~vivI~atn 322 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKGRG--------RVIVIGATN 322 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhccccCC--------CEEEEeecC
Confidence 999999999999999999999999999999999776432 33455788899999999876543 389999999
Q ss_pred CCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhh
Q 009911 391 FPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIA 468 (522)
Q Consensus 391 ~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~ 468 (522)
.++.+|+++++ ||+..+.++.|+.++|.+||+.++....+..++++..++..++||+++||..+|+.|.+.+++|.+.
T Consensus 323 ~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 323 RPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred ChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 9999999999999999999999998888888899999999999999999999999999999998764
Q ss_pred cCChH-HHhhccccccCCCCccHHHHHHHHHhhCCCC
Q 009911 469 GKTRD-EIKNMSKDEISKDPVAMCDFEEALTKVQRSV 504 (522)
Q Consensus 469 ~~~~~-~i~~~~~~~~~~~~lt~~df~~AL~~~~~sv 504 (522)
....+ .......+.+....++++||..|+..++|+.
T Consensus 403 ~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 403 EGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence 21100 0011222223456799999999999988764
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.5e-32 Score=277.87 Aligned_cols=271 Identities=32% Similarity=0.508 Sum_probs=224.8
Q ss_pred CCCCccc--ccCcH-HHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEeehhhh
Q 009911 233 PGVRWDD--VAGLT-EAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGT-TFFNVSSATL 307 (522)
Q Consensus 233 ~~~~~~d--i~G~~-~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~-~~i~v~~~~l 307 (522)
|.-.|++ |.|++ +.-...+++.......|++...++ ...+|+|||||||||||.+||.|.+.+++ .--.|+..++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 4445554 67766 445566677777777788877665 44589999999999999999999999976 4456789999
Q ss_pred hhhhhchhHHHHHHHHHHHHhh--------CCcEEEEechhhhhhccCCCCc-hhhHHHHHHHHHHHhhhcCCCCCCCCC
Q 009911 308 ASKWRGESERMVRCLFDLARAY--------APSTIFIDEIDSLCNARGASGE-HESSRRVKSELLVQVDGVNNTGTNEDG 378 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~--------~p~VL~IDEiD~l~~~~~~~~~-~~~~~~~~~~Ll~~ld~~~~~~~~~~~ 378 (522)
.++|.|++|..++.+|..|... .-.||++||||++|.+|++... ......++++||..||++..-+.
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNN---- 369 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNN---- 369 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhc----
Confidence 9999999999999999888632 1349999999999999987544 66778999999999999876543
Q ss_pred CcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccC----CCCCcccHHHHHHHcCCCcHHHHH
Q 009911 379 SRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTV----EVSKDVDIDEVARRTDGYSGDDLT 452 (522)
Q Consensus 379 ~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~----~l~~~~dl~~LA~~t~Gys~~dI~ 452 (522)
++||+-||+.+.+|+||+| ||+..+++.+||+..|.+|++++.... .+..++|+.+||..|..|||++|.
T Consensus 370 ----ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle 445 (744)
T KOG0741|consen 370 ----ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE 445 (744)
T ss_pred ----EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH
Confidence 9999999999999999999 999999999999999999999887543 467899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCC--CHHHHHHHHH
Q 009911 453 NVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSV--SQADIEKHEK 514 (522)
Q Consensus 453 ~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~sv--s~~~~~~~~~ 514 (522)
.+|+.|...|+.|.+..-.. ..+....+....|+++||..||..++|.. |.++++.|..
T Consensus 446 glVksA~S~A~nR~vk~~~~---~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 446 GLVKSAQSFAMNRHVKAGGK---VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHHHHHHhhhccCcc---eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 99999999999998754311 11222334467999999999999999965 8888888864
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.7e-31 Score=291.49 Aligned_cols=260 Identities=38% Similarity=0.650 Sum_probs=219.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeehhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSSAT 306 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~~~ 306 (522)
..+.|++|+|++.++..|+|.|.+||.+|++|.... .|++|||++||||||||+.|+++|..| ...|+.-...+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 478999999999999999999999999999999765 778999999999999999999999998 35677778889
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVL 386 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivI 386 (522)
..++|.|+.+..++.+|+.|+.++|+|||+||||-|++.+... .......++..||..|+|+...+. |+||
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-qEqih~SIvSTLLaLmdGldsRgq--------Vvvi 410 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-QEQIHASIVSTLLALMDGLDSRGQ--------VVVI 410 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-HHHhhhhHHHHHHHhccCCCCCCc--------eEEE
Confidence 9999999999999999999999999999999999998887433 334556788999999999998765 9999
Q ss_pred eecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009911 387 AATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGM 463 (522)
Q Consensus 387 attn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~ 463 (522)
++||+|+.+|++|+| ||++.++||+|+.+.|..|+.++.....-. ...-+..||..+.||.|+||+.+|.+|++.++
T Consensus 411 gATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~ 490 (1080)
T KOG0732|consen 411 GATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIAL 490 (1080)
T ss_pred cccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Confidence 999999999999999 999999999999999999999988765422 22336789999999999999999999999999
Q ss_pred HHHhhcCChH-HHhhccccccCCCCccHHHHHHHHHhhCCCC
Q 009911 464 RRKIAGKTRD-EIKNMSKDEISKDPVAMCDFEEALTKVQRSV 504 (522)
Q Consensus 464 ~r~~~~~~~~-~i~~~~~~~~~~~~lt~~df~~AL~~~~~sv 504 (522)
++....+-.. ....+. .....|..+||..|+.+..++.
T Consensus 491 ~r~~Pq~y~s~~kl~~d---~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 491 RRSFPQIYSSSDKLLID---VALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred ccccCeeeccccccccc---chhhhhhhHhhhhhhhccCCCC
Confidence 9875432211 111111 1123388889999988876544
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=4.5e-30 Score=295.70 Aligned_cols=203 Identities=22% Similarity=0.273 Sum_probs=168.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh----------hc------------------------
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW----------RG------------------------ 313 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~----------~g------------------------ 313 (522)
..+++||||+||||||||+||+|+|++++++|+.++++++..++ .|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 36789999999999999999999999999999999999998654 11
Q ss_pred -------hhH--HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009911 314 -------ESE--RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVM 384 (522)
Q Consensus 314 -------~~e--~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Vi 384 (522)
..+ ..++.+|+.|+.++||||||||||.|+.+. .....+..|+..|++..... ....|+
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s~~ltL~qLLneLDg~~~~~-----s~~~VI 1774 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------SNYLSLGLLVNSLSRDCERC-----STRNIL 1774 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------cceehHHHHHHHhccccccC-----CCCCEE
Confidence 112 237889999999999999999999997541 11224788899998764221 123499
Q ss_pred EEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHH--ccCCCCCc-ccHHHHHHHcCCCcHHHHHHHHHHHH
Q 009911 385 VLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINL--KTVEVSKD-VDIDEVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 385 vIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l--~~~~l~~~-~dl~~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
||||||+|+.||+||+| ||++.|+|+.|+..+|.+++..++ +++.+..+ +|+..||..|.||||+||.+||++|+
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999988654 44455533 68999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhh
Q 009911 460 LNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKV 500 (522)
Q Consensus 460 ~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~ 500 (522)
+.++++. ...|++++|..|+.+.
T Consensus 1855 liAirq~------------------ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1855 SISITQK------------------KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHcC------------------CCccCHHHHHHHHHHH
Confidence 9999987 4578888888888764
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=6.9e-29 Score=250.20 Aligned_cols=191 Identities=20% Similarity=0.206 Sum_probs=154.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhh-----CCcEEEEechhhh
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAY-----APSTIFIDEIDSL 342 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~-----~p~VL~IDEiD~l 342 (522)
.+++.+++||||||||||++|++||+++|++|+.+++.+|.++|.|++++.++.+|..|+.. +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 36778999999999999999999999999999999999999999999999999999999864 6999999999999
Q ss_pred hhccCCCCchhhHHHH-HHHHHHHhhhcCCCCC---C-CCCCcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHH
Q 009911 343 CNARGASGEHESSRRV-KSELLVQVDGVNNTGT---N-EDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFE 415 (522)
Q Consensus 343 ~~~~~~~~~~~~~~~~-~~~Ll~~ld~~~~~~~---~-~~~~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~ 415 (522)
++.++. .......++ ..+|++.+|++....- . .......|+||+|||+|+.||++|+| ||++.+ ..|+.+
T Consensus 225 ~g~r~~-~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGT-TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCC-CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 998863 334444444 4899999997532110 0 01133559999999999999999999 999865 589999
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHcCC----CcHHHHHHHHHHHHHHH
Q 009911 416 SRKELIKINLKTVEVSKDVDIDEVARRTDG----YSGDDLTNVCRDASLNG 462 (522)
Q Consensus 416 ~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~G----ys~~dI~~lv~~A~~~a 462 (522)
+|..||+.+++...+. ..++..|+..+.| |.|+--..+..++...-
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~ 351 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKW 351 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHH
Confidence 9999999999887665 5788889998887 45554444555554433
No 38
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.7e-21 Score=193.22 Aligned_cols=214 Identities=24% Similarity=0.430 Sum_probs=162.7
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhch
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGE 314 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~ 314 (522)
-.|++||-...+.+.|..+...--. -+.-..|.++||||||||||||++|+-||...|..+-.+...++..- -.+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATAN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 3477888888888888776643211 11223456799999999999999999999999999888777665421 122
Q ss_pred hHHHHHHHHHHHHhhCCc-EEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC
Q 009911 315 SERMVRCLFDLARAYAPS-TIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW 393 (522)
Q Consensus 315 ~e~~l~~~f~~a~~~~p~-VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~ 393 (522)
.-..|+.+|+++.....+ +|||||+|.++-.|......+..+..++.||-.--. ....++++.+||+|.
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----------qSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSRDIVLVLATNRPG 496 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----------cccceEEEeccCCcc
Confidence 334589999999987655 679999999998887777788888888888732211 223488889999999
Q ss_pred CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-----------------------Cccc----HHHHHHHcCCC
Q 009911 394 DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-----------------------KDVD----IDEVARRTDGY 446 (522)
Q Consensus 394 ~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-----------------------~~~d----l~~LA~~t~Gy 446 (522)
++|.++-.|++..++||+|..++|..||..++.++.+. ..++ +.+.|..|+||
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999988654311 1112 45789999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q 009911 447 SGDDLTNVCRDASLNGM 463 (522)
Q Consensus 447 s~~dI~~lv~~A~~~a~ 463 (522)
||++|..|+--.....+
T Consensus 577 SGREiakLva~vQAavY 593 (630)
T KOG0742|consen 577 SGREIAKLVASVQAAVY 593 (630)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999864443333
No 39
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-21 Score=191.07 Aligned_cols=235 Identities=28% Similarity=0.349 Sum_probs=175.7
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccC--CCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEeehh
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR--RPWKGVLMFGPPGTGKTLLAKAVATECG---------TTFFNVSSA 305 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~--~~~~~vLL~GppGtGKT~LAraiA~~lg---------~~~i~v~~~ 305 (522)
|+.++--.++|+.|..|+...+...+...... .-.+=+||+||||||||+|++++|+.+. ..++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 44455556889999999876654444333222 1224589999999999999999999984 367999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhC---C--cEEEEechhhhhhccC---CCCchhhHHHHHHHHHHHhhhcCCCCCCCC
Q 009911 306 TLASKWRGESERMVRCLFDLARAYA---P--STIFIDEIDSLCNARG---ASGEHESSRRVKSELLVQVDGVNNTGTNED 377 (522)
Q Consensus 306 ~l~~~~~g~~e~~l~~~f~~a~~~~---p--~VL~IDEiD~l~~~~~---~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~ 377 (522)
.+.++|.+++.+.+..+|+...... . ..++|||+++|...|. +..+....-|+++.+|.+||.+....
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~---- 296 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP---- 296 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC----
Confidence 9999999999999999998776432 2 2567999999998773 33455567799999999999998654
Q ss_pred CCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC------------------CcccHHHH
Q 009911 378 GSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS------------------KDVDIDEV 439 (522)
Q Consensus 378 ~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~------------------~~~dl~~L 439 (522)
+|++++|+|-.+.+|.|+..|-+...|+..|+...+..|++.++.++.-. .+.....+
T Consensus 297 ----NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~ 372 (423)
T KOG0744|consen 297 ----NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNIL 372 (423)
T ss_pred ----CEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHH
Confidence 49999999999999999999999999999999999999999887543110 01112233
Q ss_pred HHH-cCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHh
Q 009911 440 ARR-TDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTK 499 (522)
Q Consensus 440 A~~-t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~ 499 (522)
+.. +.|.||+.|+.|---|... . ....+++..+|..|+..
T Consensus 373 ~~~~~~gLSGRtlrkLP~Laha~----y----------------~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 373 IELSTVGLSGRTLRKLPLLAHAE----Y----------------FRTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHhhcCCccchHhhhhHHHHHh----c----------------cCCCccChHHHHHHHHH
Confidence 443 3788888888765433211 1 11358999999988754
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=5.1e-21 Score=190.83 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=156.3
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhh-ccC--CCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEeehhh
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQ-GIR--RPWKGVLMFGPPGTGKTLLAKAVATEC-------GTTFFNVSSAT 306 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~-~~~--~~~~~vLL~GppGtGKT~LAraiA~~l-------g~~~i~v~~~~ 306 (522)
+++++|++++|+.|.+++.++........ +.. ....++||+||||||||++|+++|+.+ ...++++++..
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 57899999999999999887654433222 222 223589999999999999999999875 24788999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVL 386 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivI 386 (522)
+.+.|.|+....+..+|..+. .+||||||+|.|... .+.......+..|+..|+.... .+++|
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~----~~~~~~~~~i~~Ll~~~e~~~~----------~~~vi 147 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG----GEKDFGKEAIDTLVKGMEDNRN----------EFVLI 147 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC----CccchHHHHHHHHHHHHhccCC----------CEEEE
Confidence 999999999888888887764 479999999998632 2233445677888888875422 14444
Q ss_pred eecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHc---------CCCcHHHH
Q 009911 387 AATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRT---------DGYSGDDL 451 (522)
Q Consensus 387 attn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t---------~Gys~~dI 451 (522)
+++... ..++++|++||...|.||.++.+++..|++.++...... ++..+..|+... ..-.++.+
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~ 227 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYV 227 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 444322 246789999998899999999999999999988765432 122234443321 12357888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009911 452 TNVCRDASLNGMRRKIA 468 (522)
Q Consensus 452 ~~lv~~A~~~a~~r~~~ 468 (522)
.+++..|......|.+.
T Consensus 228 ~n~~e~a~~~~~~r~~~ 244 (261)
T TIGR02881 228 RNIIEKAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88998888777777653
No 41
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7e-21 Score=203.89 Aligned_cols=225 Identities=24% Similarity=0.360 Sum_probs=180.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~ 351 (522)
..+||+|+||||||++++++|.++|.++++++|.++.....+.++..+..+|..|+.+.|+|||+-++|.+.-....
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg--- 508 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG--- 508 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998743322
Q ss_pred hhhHHHHHHHHHHHhh-hcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC
Q 009911 352 HESSRRVKSELLVQVD-GVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV 430 (522)
Q Consensus 352 ~~~~~~~~~~Ll~~ld-~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l 430 (522)
....+++..+-..+. .... .....++||++++..+.+++.+++.|-+.|.++.|+.++|.+||++++..+.+
T Consensus 509 -ged~rl~~~i~~~ls~e~~~------~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~ 581 (953)
T KOG0736|consen 509 -GEDARLLKVIRHLLSNEDFK------FSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPL 581 (953)
T ss_pred -chhHHHHHHHHHHHhccccc------CCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 333444444444443 1111 13355999999999999999999999899999999999999999999999999
Q ss_pred CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHH--hhccccccCCCCccHHHHHHHHHhhCCCCCH
Q 009911 431 SKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEI--KNMSKDEISKDPVAMCDFEEALTKVQRSVSQ 506 (522)
Q Consensus 431 ~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i--~~~~~~~~~~~~lt~~df~~AL~~~~~svs~ 506 (522)
..++.+..+|.++.||+.+++..++.++...+..+..+....... ............++++||.+|+.+++...++
T Consensus 582 n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~ 659 (953)
T KOG0736|consen 582 NQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSD 659 (953)
T ss_pred chHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999988866665555432210000 0111122345789999999999988754443
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=2.2e-20 Score=188.22 Aligned_cols=213 Identities=19% Similarity=0.260 Sum_probs=157.6
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhc--cC--CCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEeehhh
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQG--IR--RPWKGVLMFGPPGTGKTLLAKAVATECG-------TTFFNVSSAT 306 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~--~~--~~~~~vLL~GppGtGKT~LAraiA~~lg-------~~~i~v~~~~ 306 (522)
.+++|++++|+.|.+++.+.. ....+.. .. .++.++||+||||||||++|+++|+.+. .+|+.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 369999999999999887633 3344432 22 2345699999999999999999999862 3699999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVL 386 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivI 386 (522)
+.+.|.|+++..+..+|+.+. .+||||||+|.+...+ ........++..|+..|+... ..++||
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~---~~~~~~~e~~~~L~~~me~~~----------~~~~vI 165 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPD---NERDYGSEAIEILLQVMENQR----------DDLVVI 165 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCC---CccchHHHHHHHHHHHHhcCC----------CCEEEE
Confidence 999999988777777777654 4899999999986432 223456778888998887432 226666
Q ss_pred eecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC--CCCcccHHHHHHH------cCCCc-HHHHH
Q 009911 387 AATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE--VSKDVDIDEVARR------TDGYS-GDDLT 452 (522)
Q Consensus 387 attn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~--l~~~~dl~~LA~~------t~Gys-~~dI~ 452 (522)
++++.. ..++++|++||+..|+|+.++.+++.+|++.++.... +.++ ....|... .+.|. +++++
T Consensus 166 ~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~-~~~~L~~~i~~~~~~~~~GNaR~vr 244 (287)
T CHL00181 166 FAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE-AEKALLDYIKKRMEQPLFANARSVR 244 (287)
T ss_pred EeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHhCCCCCCccHHHHH
Confidence 666432 1345999999999999999999999999999987643 2222 22223332 23444 89999
Q ss_pred HHHHHHHHHHHHHHhh
Q 009911 453 NVCRDASLNGMRRKIA 468 (522)
Q Consensus 453 ~lv~~A~~~a~~r~~~ 468 (522)
+++..|......|...
T Consensus 245 n~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 245 NALDRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999998888777754
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=5.9e-20 Score=185.07 Aligned_cols=213 Identities=19% Similarity=0.211 Sum_probs=158.1
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccC----CCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEeehhhh
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIR----RPWKGVLMFGPPGTGKTLLAKAVATECG-------TTFFNVSSATL 307 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~----~~~~~vLL~GppGtGKT~LAraiA~~lg-------~~~i~v~~~~l 307 (522)
+++|++++|+.|.+.+.+ +..+..+...+ .+..++||+||||||||++|+++|..+. .+|+.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 599999999999998877 33444444222 2456899999999999999999998873 37999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEe
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLA 387 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIa 387 (522)
.+.+.|+++..+..+|+.+. ++||||||++.|...+ ........++..|+..|+... ..++||+
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~---~~~~~~~~~~~~Ll~~le~~~----------~~~~vI~ 165 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPD---NERDYGQEAIEILLQVMENQR----------DDLVVIL 165 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCC---CccchHHHHHHHHHHHHhcCC----------CCEEEEE
Confidence 98899988877888887764 3899999999986432 123455677888998887432 2266666
Q ss_pred ecCCC--C---CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHc------CC-CcHHHHHHH
Q 009911 388 ATNFP--W---DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRT------DG-YSGDDLTNV 454 (522)
Q Consensus 388 ttn~p--~---~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t------~G-ys~~dI~~l 454 (522)
+++.. + .++++|++||...|.||.++.+++..|++.++...... ....+..|+... +. -.++.++++
T Consensus 166 a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ 245 (284)
T TIGR02880 166 AGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNA 245 (284)
T ss_pred eCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 66532 2 34799999999999999999999999999999775432 112233444431 21 258999999
Q ss_pred HHHHHHHHHHHHhh
Q 009911 455 CRDASLNGMRRKIA 468 (522)
Q Consensus 455 v~~A~~~a~~r~~~ 468 (522)
+..+....-.|...
T Consensus 246 ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 246 IDRARLRQANRLFC 259 (284)
T ss_pred HHHHHHHHHHHHhc
Confidence 99998887777654
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=1.7e-20 Score=166.22 Aligned_cols=130 Identities=39% Similarity=0.628 Sum_probs=116.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhC-CcEEEEechhhhhhccCCCCch
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYA-PSTIFIDEIDSLCNARGASGEH 352 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~~~~~~~~ 352 (522)
|||+||||||||++|+.+|+.++.+++.+++..+.+.+.+.....+..+|..+.... |+||||||+|.++... .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 699999999999999999999999999999999998889999999999999999887 9999999999999887 44566
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHH-hhcccccccCC
Q 009911 353 ESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALR-RRLEKRIYIPL 411 (522)
Q Consensus 353 ~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~-rRf~~~i~i~~ 411 (522)
.....+...|+..++...... ..++||+|||.++.+++.++ +||++.|++|+
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~-------~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKN-------SRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTS-------SSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeeccccccccc-------ccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 777888999999999876542 33999999999999999999 99999998874
No 45
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.5e-19 Score=192.14 Aligned_cols=235 Identities=23% Similarity=0.286 Sum_probs=181.8
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeehhhhhhhhhc
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG----TTFFNVSSATLASKWRG 313 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg----~~~i~v~~~~l~~~~~g 313 (522)
.|++-...+|+...+....|. .+ ..+|||+||+|||||.|+++++.++. +++..++|+++......
T Consensus 408 ~d~i~~~s~kke~~n~~~spv--------~~--~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV--------FR--HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhcccc--------cc--cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 456666777777666555542 12 24899999999999999999999984 57788999999887777
Q ss_pred hhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC-CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC
Q 009911 314 ESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG-ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP 392 (522)
Q Consensus 314 ~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~-~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p 392 (522)
...+.+..+|..+.+++|+||++|++|.|++..+ ..+........+..+++++-...... +..+.||++.+..
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~------~~~ia~Iat~qe~ 551 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKR------NRKIAVIATGQEL 551 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHcc------CcEEEEEEechhh
Confidence 7888999999999999999999999999997322 22333344444556665554444332 2448999999999
Q ss_pred CCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 009911 393 WDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAG 469 (522)
Q Consensus 393 ~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~ 469 (522)
..+++.|.+ +|+.++.+|.|+..+|.+||+..+.+.... ...|++-++..|+||...|+..++.+|...+++..+..
T Consensus 552 qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~ 631 (952)
T KOG0735|consen 552 QTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN 631 (952)
T ss_pred hhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc
Confidence 999998888 899999999999999999999988765422 22345559999999999999999999999998555321
Q ss_pred CChHHHhhccccccCCCCccHHHHHHHHHhhCC
Q 009911 470 KTRDEIKNMSKDEISKDPVAMCDFEEALTKVQR 502 (522)
Q Consensus 470 ~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~ 502 (522)
. ...+|.++|.++|+.+-|
T Consensus 632 -------------~-~klltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 632 -------------G-PKLLTKELFEKSLKDFVP 650 (952)
T ss_pred -------------C-cccchHHHHHHHHHhcCh
Confidence 1 227899999999998764
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=6.2e-20 Score=174.69 Aligned_cols=201 Identities=21% Similarity=0.298 Sum_probs=129.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
....+.+|+|++|+++++..+.-++..- .....+..++|||||||+||||||+.||++++..|..+++..+..
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa-------~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAA-------KKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHH-------HCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHH-------HhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 3456778999999999999987765421 111223459999999999999999999999999999988765321
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC-----CCC---CCCCCcc
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN-----TGT---NEDGSRK 381 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~-----~~~---~~~~~~~ 381 (522)
.++ +..++... ....||||||||.| .+.++..|+..|+...- .+. ...-..+
T Consensus 89 --~~d----l~~il~~l--~~~~ILFIDEIHRl------------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 89 --AGD----LAAILTNL--KEGDILFIDEIHRL------------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp --CHH----HHHHHHT----TT-EEEECTCCC--------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred --HHH----HHHHHHhc--CCCcEEEEechhhc------------cHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 111 22222222 24579999999665 46677889999986432 110 0001123
Q ss_pred eEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 382 IVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSK-DVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 382 ~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~-~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
.+.+|++|+....+...|++||.....+..++.++...|++.....+.+.- +....++|.++.| +++-..++++.+
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 477899999999999999999998889999999999999997766555432 2336789999997 677666666543
No 47
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=2.6e-18 Score=194.20 Aligned_cols=256 Identities=22% Similarity=0.321 Sum_probs=177.6
Q ss_pred HHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----
Q 009911 221 AAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----- 295 (522)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----- 295 (522)
.+.+..++.+...+-.+++++|.++..+.+.+.+.. +...++||+||||||||++|+++|..+
T Consensus 165 l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~ 232 (731)
T TIGR02639 165 LEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKV 232 (731)
T ss_pred HHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 334444555555667788999999998887776532 223589999999999999999999998
Q ss_pred -----CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 296 -----GTTFFNVSSATLA--SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 296 -----g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
+..++.+++..+. .+|.|+.+..++.+|+.+....++||||||||.|++.....+. ...+.+.|...+.
T Consensus 233 p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~---~~~~~~~L~~~l~- 308 (731)
T TIGR02639 233 PENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG---SMDASNLLKPALS- 308 (731)
T ss_pred chhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc---cHHHHHHHHHHHh-
Confidence 7889999998887 4789999999999999998878899999999999865432211 1122333433332
Q ss_pred cCCCCCCCCCCcceEEEEeecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC----C-CCcccHHH
Q 009911 369 VNNTGTNEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE----V-SKDVDIDE 438 (522)
Q Consensus 369 ~~~~~~~~~~~~~~VivIattn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~----l-~~~~dl~~ 438 (522)
. ..+.+|++||.. ...|++|.|||. .|.|+.|+.+++..||+.....+. + ..+..+..
T Consensus 309 ---~--------g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~ 376 (731)
T TIGR02639 309 ---S--------GKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEA 376 (731)
T ss_pred ---C--------CCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHH
Confidence 1 227788888853 468999999996 799999999999999997665421 1 23344667
Q ss_pred HHHHcCCCcHH-----HHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC-C---CCCHHHH
Q 009911 439 VARRTDGYSGD-----DLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ-R---SVSQADI 509 (522)
Q Consensus 439 LA~~t~Gys~~-----dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~-~---svs~~~~ 509 (522)
++..+..|-+. ..-.++++|......+. .......|+.+|+..++.... - .++.++.
T Consensus 377 ~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~--------------~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~ 442 (731)
T TIGR02639 377 AVELSARYINDRFLPDKAIDVIDEAGASFRLRP--------------KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDR 442 (731)
T ss_pred HHHhhhcccccccCCHHHHHHHHHhhhhhhcCc--------------ccccccccCHHHHHHHHHHHhCCChhhhhhHHH
Confidence 77777766433 33455665543221110 001135689999999998864 1 2345556
Q ss_pred HHHHHHHHH
Q 009911 510 EKHEKWFQE 518 (522)
Q Consensus 510 ~~~~~w~~~ 518 (522)
+++..-.+.
T Consensus 443 ~~l~~l~~~ 451 (731)
T TIGR02639 443 EKLKNLEKN 451 (731)
T ss_pred HHHHHHHHH
Confidence 666554443
No 48
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.9e-19 Score=180.42 Aligned_cols=205 Identities=23% Similarity=0.343 Sum_probs=160.1
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCC-ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhc
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPW-KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRG 313 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~-~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g 313 (522)
.+|+-++--.++|+.|.+-+...+...++|+..+++| +|.|||||||||||+++-|+|+.++..++.++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 6788888889999999999988889999999999998 59999999999999999999999999999998877432
Q ss_pred hhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC-----ch-hhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEe
Q 009911 314 ESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG-----EH-ESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLA 387 (522)
Q Consensus 314 ~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~-----~~-~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIa 387 (522)
..+ ++.++... ...+||+|.+||.-+.-+.... .+ ....-.++-||+.+||+....+ ..-+||.
T Consensus 274 n~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg------~ERIivF 343 (457)
T KOG0743|consen 274 DSD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG------DERIIVF 343 (457)
T ss_pred cHH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC------CceEEEE
Confidence 222 56555433 3358999999997654322111 11 1345677899999999998753 3378999
Q ss_pred ecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCC--CcHHHHHHHH
Q 009911 388 ATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDG--YSGDDLTNVC 455 (522)
Q Consensus 388 ttn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~G--ys~~dI~~lv 455 (522)
|||..+.|||||+| |++.+|++...+......+++.++..-. +..-+.++.+..++ .|++|+...+
T Consensus 344 TTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 344 TTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred ecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 99999999999999 9999999999999999999999885422 12224444444444 5899987643
No 49
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.7e-18 Score=182.92 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=141.4
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---------- 297 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---------- 297 (522)
+.++|.+.+|+||+|++.+++.|.+++.. ++..+.+||+||+|+|||++|+++|+.+++
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 45678999999999999999999998853 234467899999999999999999999976
Q ss_pred -------------------cEEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhh
Q 009911 298 -------------------TFFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHES 354 (522)
Q Consensus 298 -------------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~ 354 (522)
.+++++...- ..-..++.+.+... .....|+||||+|.|.
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------- 137 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------- 137 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------
Confidence 2233332210 11122444444433 2234699999999874
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCC-c
Q 009911 355 SRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSK-D 433 (522)
Q Consensus 355 ~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~-~ 433 (522)
....+.||+.|++... .++||.+|++++.|.+.|++|| ..+.|..++.++....++..+....+.. +
T Consensus 138 -~~AaNALLKTLEEPP~----------~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~ 205 (700)
T PRK12323 138 -NHAFNAMLKTLEEPPE----------HVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEV 205 (700)
T ss_pred -HHHHHHHHHhhccCCC----------CceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCH
Confidence 3456889999986443 3788888999999999999999 5899999999999888887775544332 2
Q ss_pred ccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 434 VDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 434 ~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
..+..|+..++| +.++..+++..+..
T Consensus 206 eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 206 NALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 336778888886 67777777776543
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.79 E-value=2.4e-18 Score=174.19 Aligned_cols=178 Identities=26% Similarity=0.401 Sum_probs=127.4
Q ss_pred CCCCcccccCcHHHH---HHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 233 PGVRWDDVAGLTEAK---RLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 233 ~~~~~~di~G~~~vk---~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
.+.+++|++|++.+. .-|..++.. ....+++|||||||||||||+.||..++..|..+++..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 356678888877764 233333321 11249999999999999999999999999999999865
Q ss_pred hhhchhHHHHHHHHHHHHhhC----CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 310 KWRGESERMVRCLFDLARAYA----PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~----p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
.| -+-++.+++.++... ..||||||||++- +..+..||..|+. ...++|
T Consensus 84 --~g--vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn------------K~QQD~lLp~vE~-----------G~iilI 136 (436)
T COG2256 84 --SG--VKDLREIIEEARKNRLLGRRTILFLDEIHRFN------------KAQQDALLPHVEN-----------GTIILI 136 (436)
T ss_pred --cc--HHHHHHHHHHHHHHHhcCCceEEEEehhhhcC------------hhhhhhhhhhhcC-----------CeEEEE
Confidence 22 334888998886433 5799999997653 4556788888862 233555
Q ss_pred EeecCCC-CCccHHHHhhcccccccCCCCHHHHHHHHHHHHcc--CCCC------CcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 386 LAATNFP-WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKT--VEVS------KDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 386 Iattn~p-~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~--~~l~------~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
-+||.+| ..+.++|++|+ ..+.+...+.++...+++..+.. ..+. ++..++.|+..++| |.+.+++
T Consensus 137 GATTENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN 211 (436)
T COG2256 137 GATTENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALN 211 (436)
T ss_pred eccCCCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHH
Confidence 5666677 79999999999 58889999999999999884432 1222 23335667777666 6666655
Q ss_pred H
Q 009911 457 D 457 (522)
Q Consensus 457 ~ 457 (522)
.
T Consensus 212 ~ 212 (436)
T COG2256 212 L 212 (436)
T ss_pred H
Confidence 3
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=7.7e-18 Score=184.00 Aligned_cols=192 Identities=18% Similarity=0.170 Sum_probs=142.3
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++..+.+||+||+|||||+++++||+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 45678999999999999999999998753 2344678999999999999999999998752
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
+++++..+- ..-..++.+++.+.. ....||||||+|.|.. ...
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------~A~ 136 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------HAF 136 (830)
T ss_pred ccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------HHH
Confidence 333333211 111224555554432 2346999999998742 346
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.||+.|+.... .+.||.+||+++.|.+.|++|| ..|.|..++.++....|+..+....+. ++..+..
T Consensus 137 NALLKtLEEPP~----------~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~l 205 (830)
T PRK07003 137 NAMLKTLEEPPP----------HVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRL 205 (830)
T ss_pred HHHHHHHHhcCC----------CeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 889999986543 2788999999999999999999 589999999999999888877654433 3445778
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|++.++| +.++..+++.++..
T Consensus 206 IA~~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 206 LARAAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 8898887 56677777666553
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=5.6e-17 Score=167.12 Aligned_cols=207 Identities=21% Similarity=0.234 Sum_probs=143.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
.++.+.+|+|++|.+++++.|..++... .....+..++||+||||||||++|+++|++++..+..++...+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~-------~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAA-------KKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHH-------HhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 4567789999999999999998877431 111344568999999999999999999999999887776553321
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC-----CCCC---CCCCcc
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN-----TGTN---EDGSRK 381 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~-----~~~~---~~~~~~ 381 (522)
...+..++... ..++||||||||.+... ....|+..|+.... .... ......
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPV------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcchH------------HHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 11233333322 34689999999987421 12234444443211 0000 000112
Q ss_pred eEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 382 IVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 382 ~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
.+.+|++|+.+..++++|++||...+.++.|+.+++.+|++.......+. ++..+..|+..+.|+ ++.+..+++.+..
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~ 228 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRD 228 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHH
Confidence 36789999999999999999998889999999999999999877654433 233478899999985 4777778876655
Q ss_pred HHHH
Q 009911 461 NGMR 464 (522)
Q Consensus 461 ~a~~ 464 (522)
.+..
T Consensus 229 ~a~~ 232 (328)
T PRK00080 229 FAQV 232 (328)
T ss_pred HHHH
Confidence 5543
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=2e-17 Score=168.62 Aligned_cols=201 Identities=21% Similarity=0.257 Sum_probs=137.7
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchh
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGES 315 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~ 315 (522)
+|+|++|++++++.|..++.... .....+.+++|+||||||||+||+++|++++..+..++...+.. .+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~-------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~~- 71 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK-------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PGD- 71 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH-------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--chh-
Confidence 68999999999999988775321 11233458999999999999999999999998887766543221 111
Q ss_pred HHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-----C---CCCCCCcceEEEEe
Q 009911 316 ERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-----G---TNEDGSRKIVMVLA 387 (522)
Q Consensus 316 e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-----~---~~~~~~~~~VivIa 387 (522)
+...+.. ...+.+|||||||.+... ....|+..|+..... . .........+.+|+
T Consensus 72 ---l~~~l~~--~~~~~vl~iDEi~~l~~~------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 72 ---LAAILTN--LEEGDVLFIDEIHRLSPA------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred ---HHHHHHh--cccCCEEEEehHhhhCHH------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 2222222 234689999999987532 223344444432210 0 00000112378889
Q ss_pred ecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009911 388 ATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMR 464 (522)
Q Consensus 388 ttn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~ 464 (522)
+|+.+..+++++++||...+.++.++.+++.++++..+....+. ++..+..|+..+.|+. +.+..++..+...+..
T Consensus 135 ~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHH
Confidence 99999999999999998888999999999999999877644332 2334678999999865 6677888776555443
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=7.2e-17 Score=170.56 Aligned_cols=191 Identities=20% Similarity=0.216 Sum_probs=140.3
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+.+.|..++.. ++.++.+||+||+|||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 45678899999999999999999888754 2334579999999999999999999998763
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
|+++++..- .| -..++.+.+.+. .....|+||||+|.|. ...+
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~----~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~ 138 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASN----RG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSF 138 (484)
T ss_pred CCcHHHHHHccCCccceeechhhc----cc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHH
Confidence 344443211 11 122344433332 2234699999998874 3467
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.||+.|+.... .+++|.+|+.++.|.+++++||. .+.|..++.++....++..+....+. ++..+..
T Consensus 139 NALLKtLEEPp~----------~viFILaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~ 207 (484)
T PRK14956 139 NALLKTLEEPPA----------HIVFILATTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFW 207 (484)
T ss_pred HHHHHHhhcCCC----------ceEEEeecCChhhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 889999876432 37888888889999999999995 78888888888888888877654432 3445788
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~ 459 (522)
||+.++| +.++..+++..+.
T Consensus 208 Ia~~S~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 208 IAKKGDG-SVRDMLSFMEQAI 227 (484)
T ss_pred HHHHcCC-hHHHHHHHHHHHH
Confidence 9998887 5677777776654
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=5e-17 Score=157.74 Aligned_cols=208 Identities=22% Similarity=0.270 Sum_probs=150.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh
Q 009911 231 TSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK 310 (522)
Q Consensus 231 ~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~ 310 (522)
...+..|+|++|++.+|+.|.-++.-. +......-++||+||||.||||||..||+++|+.+...++..+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AA-------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK- 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAA-------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK- 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHH-------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC-
Confidence 345788999999999999999887543 223344569999999999999999999999999988877665432
Q ss_pred hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC--------CCCCCCCCCcce
Q 009911 311 WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN--------NTGTNEDGSRKI 382 (522)
Q Consensus 311 ~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~--------~~~~~~~~~~~~ 382 (522)
.|+ +..++.. .....||||||||++... +-..|...|+.+. .......-+-..
T Consensus 91 -~gD----laaiLt~--Le~~DVLFIDEIHrl~~~------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 -PGD----LAAILTN--LEEGDVLFIDEIHRLSPA------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -hhh----HHHHHhc--CCcCCeEEEehhhhcChh------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 222 2222221 123479999999887532 3344556666442 111111123345
Q ss_pred EEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009911 383 VMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSK-DVDIDEVARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 383 VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~-~~dl~~LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
+.+|++|.+...|...|+.||.....+..++.++...|++.....+.+.- +....++|+++.| +++-...|+++..-.
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDf 230 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDF 230 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999998776655442 2346789999998 677666777777666
Q ss_pred HHHHH
Q 009911 462 GMRRK 466 (522)
Q Consensus 462 a~~r~ 466 (522)
+..+.
T Consensus 231 a~V~~ 235 (332)
T COG2255 231 AQVKG 235 (332)
T ss_pred HHHhc
Confidence 65544
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=9.4e-17 Score=178.59 Aligned_cols=197 Identities=19% Similarity=0.173 Sum_probs=138.9
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE-------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF------- 300 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i------- 300 (522)
+.++|++.+|+||+|++.+++.|+.++.. ++..+.+||+||+|||||++|+++|+.+++.-.
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 35678899999999999999999988753 234456799999999999999999999976410
Q ss_pred Ee-ehhhhhhh-------hhc---hhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHH
Q 009911 301 NV-SSATLASK-------WRG---ESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQ 365 (522)
Q Consensus 301 ~v-~~~~l~~~-------~~g---~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ 365 (522)
.+ +|..+... +.+ ..-..++.+.+.+.. ....||||||+|.|. ...++.||+.
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLKt 142 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLKT 142 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHHH
Confidence 00 01111100 000 111224444443321 234699999998774 4567899999
Q ss_pred hhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcC
Q 009911 366 VDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTD 444 (522)
Q Consensus 366 ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~ 444 (522)
|+..... +.||++|+.+..|.+.|++|| ..+.|..++.++....|+..+....+. .+..+..|+..+.
T Consensus 143 LEEPP~~----------vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~ 211 (944)
T PRK14949 143 LEEPPEH----------VKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAAN 211 (944)
T ss_pred HhccCCC----------eEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 9875432 667777888889999999999 589999999999998888877653332 2334677888888
Q ss_pred CCcHHHHHHHHHHHH
Q 009911 445 GYSGDDLTNVCRDAS 459 (522)
Q Consensus 445 Gys~~dI~~lv~~A~ 459 (522)
| +.+++.++|..+.
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6778888887665
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.4e-16 Score=172.59 Aligned_cols=206 Identities=19% Similarity=0.215 Sum_probs=147.2
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---------- 297 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---------- 297 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++..+.+||+||+|+|||++|+++|+.+++
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 35678899999999999999999998753 344578999999999999999999999875
Q ss_pred --------------cEEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 298 --------------TFFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 298 --------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
.++++++++-. .-..++.+...+.. ....|+||||+|.|.. ...
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------~A~ 135 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------HSF 135 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------HHH
Confidence 34444443211 11234444443321 2346999999987742 346
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|++.|+..... +.||.+|+.+..+...+++|| ..+.|..++.++....++..+....+. .+..+..
T Consensus 136 NALLKtLEEPP~~----------v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~ 204 (702)
T PRK14960 136 NALLKTLEEPPEH----------VKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQ 204 (702)
T ss_pred HHHHHHHhcCCCC----------cEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7889888865432 667777788888999999999 589999999999999888877654433 3344778
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhc
Q 009911 439 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNM 478 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~ 478 (522)
||..+.| +.+++.+++..+.... ...++.+.+..+
T Consensus 205 IA~~S~G-dLRdALnLLDQaIayg----~g~IT~edV~~l 239 (702)
T PRK14960 205 IAESAQG-SLRDALSLTDQAIAYG----QGAVHHQDVKEM 239 (702)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHH
Confidence 8888876 7777777776654321 223555555443
No 58
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=2.1e-16 Score=173.37 Aligned_cols=192 Identities=21% Similarity=0.240 Sum_probs=140.6
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|...+.. ++..+.+||+||+|+|||++|+++|+.+++.
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 34678899999999999999999988753 2334568999999999999999999999763
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
|+++++..- . .-..++.+.+.+. .....|+||||+|.|. ...+
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas~----~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~ 136 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAASR----T--KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSF 136 (647)
T ss_pred CCHHHHHHHcCCCCCceeeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHH
Confidence 233333210 0 1122444443332 2234699999998774 3467
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.||+.|+..... +.||.+|+.+..|.+.+++|| ..+.|..++.++....|+..+....+. ++..+..
T Consensus 137 NALLKtLEEPp~~----------v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~ 205 (647)
T PRK07994 137 NALLKTLEEPPEH----------VKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQL 205 (647)
T ss_pred HHHHHHHHcCCCC----------eEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8999999975433 677777888999999999999 689999999999999998877544332 3344677
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|+..++| +.+++.+++..|..
T Consensus 206 Ia~~s~G-s~R~Al~lldqaia 226 (647)
T PRK07994 206 LARAADG-SMRDALSLTDQAIA 226 (647)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 8888887 67777778876643
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=7.6e-17 Score=180.76 Aligned_cols=240 Identities=21% Similarity=0.277 Sum_probs=167.9
Q ss_pred HHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----
Q 009911 220 LAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---- 295 (522)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---- 295 (522)
..+.+..++.+....-.++.++|.+...+.+.+.+.. +...++||+||||||||++|+++|..+
T Consensus 168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~ 235 (758)
T PRK11034 168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_pred HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4455556666666666788899999998888886643 123589999999999999999999875
Q ss_pred ------CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhh
Q 009911 296 ------GTTFFNVSSATLA--SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 296 ------g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld 367 (522)
+..++.++...+. .+|.|+.+..++.+|..+....++||||||||.|++.+...+... .+.+.|...+.
T Consensus 236 vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~---d~~nlLkp~L~ 312 (758)
T PRK11034 236 VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV---DAANLIKPLLS 312 (758)
T ss_pred CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH---HHHHHHHHHHh
Confidence 6677888777766 467899999999999988888889999999999987653222111 12222222221
Q ss_pred hcCCCCCCCCCCcceEEEEeecCCCC-----CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHH-----
Q 009911 368 GVNNTGTNEDGSRKIVMVLAATNFPW-----DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDID----- 437 (522)
Q Consensus 368 ~~~~~~~~~~~~~~~VivIattn~p~-----~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~----- 437 (522)
. ..+.||++|+.++ ..|++|.|||+ .|.++.|+.+++..||+.....+....++.+.
T Consensus 313 ----~--------g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~ 379 (758)
T PRK11034 313 ----S--------GKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVR 379 (758)
T ss_pred ----C--------CCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHH
Confidence 1 2288899888763 67999999996 79999999999999999877665555445443
Q ss_pred HHHHHcC-----CCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 438 EVARRTD-----GYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 438 ~LA~~t~-----Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
.++..+. .+-+.....++++|...... .. .. .....|+.+|+.+.+.+..
T Consensus 380 ~a~~ls~ryi~~r~lPdKaidlldea~a~~~~--~~----~~--------~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 380 AAVELAVKYINDRHLPDKAIDVIDEAGARARL--MP----VS--------KRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHhhccccCccChHHHHHHHHHHHHhhcc--Cc----cc--------ccccccChhhHHHHHHHHh
Confidence 3333333 34556788888888654321 10 00 0123577778877777654
No 60
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.74 E-value=1.3e-16 Score=158.97 Aligned_cols=183 Identities=23% Similarity=0.359 Sum_probs=123.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeehhhhhhhhhchhHHHHHHHHHHHHhh-----CCcEEEEechhhhhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTT---FFNVSSATLASKWRGESERMVRCLFDLARAY-----APSTIFIDEIDSLCN 344 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~---~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~-----~p~VL~IDEiD~l~~ 344 (522)
+++||||||||||+||+.|+.....+ |+++++++-. ...++.+|+.++.. ...|||||||+++.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~-------t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN- 235 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK-------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN- 235 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc-------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-
Confidence 99999999999999999999988665 8888876522 23388888887643 46899999997653
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC-CCccHHHHhhcccccccCCCCHHHHHHHHHH
Q 009911 345 ARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP-WDIDEALRRRLEKRIYIPLPNFESRKELIKI 423 (522)
Q Consensus 345 ~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p-~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~ 423 (522)
+..+..||-.++ ....++|-+||.+| ..+..+|++|| +++.+.....+....||..
T Consensus 236 -----------ksQQD~fLP~VE-----------~G~I~lIGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 236 -----------KSQQDTFLPHVE-----------NGDITLIGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred -----------hhhhhcccceec-----------cCceEEEecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHH
Confidence 344566665554 12224444566666 79999999999 5778888888888888887
Q ss_pred HHccC--------CCC------CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCcc
Q 009911 424 NLKTV--------EVS------KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVA 489 (522)
Q Consensus 424 ~l~~~--------~l~------~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt 489 (522)
....+ .+. .+--++.|+..++|-....|.. +..+..+.+.|.- .....+|+
T Consensus 293 aia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~-Lems~~m~~tr~g--------------~~~~~~lS 357 (554)
T KOG2028|consen 293 AIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA-LEMSLSMFCTRSG--------------QSSRVLLS 357 (554)
T ss_pred HHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH-HHHHHHHHHhhcC--------------Ccccceec
Confidence 44311 111 1222677888888754433332 2233223333321 11256899
Q ss_pred HHHHHHHHHhhC
Q 009911 490 MCDFEEALTKVQ 501 (522)
Q Consensus 490 ~~df~~AL~~~~ 501 (522)
.+|+.+.|..-.
T Consensus 358 idDvke~lq~s~ 369 (554)
T KOG2028|consen 358 IDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHhhcc
Confidence 999999998754
No 61
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=4.1e-17 Score=185.50 Aligned_cols=240 Identities=20% Similarity=0.184 Sum_probs=153.9
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh---------h
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA---------S 309 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~---------~ 309 (522)
|++|++++++.+.+++..+.... ......+||+||||||||++|++||+.++.+|+.+++..+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 58999999999999886543111 11223799999999999999999999999999998765432 2
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-----CCCCCCcceEE
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-----TNEDGSRKIVM 384 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-----~~~~~~~~~Vi 384 (522)
.|.|.....+...|..+....| ||||||||.+...... ...+.|+..|+...... .....+...++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~--------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG--------DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC--------CHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 3455555556667777665555 8999999999753211 12356676666321110 00111224588
Q ss_pred EEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHc-----cCCCC------CcccHHHHHH-HcCCCcHHHHH
Q 009911 385 VLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLK-----TVEVS------KDVDIDEVAR-RTDGYSGDDLT 452 (522)
Q Consensus 385 vIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~-----~~~l~------~~~dl~~LA~-~t~Gys~~dI~ 452 (522)
||+|||.++.++++|++||. .|.|+.|+.+++..|++.++. ...+. .+..+..|++ .+..+..++|.
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~ 544 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLE 544 (775)
T ss_pred EEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHH
Confidence 99999999999999999995 899999999999999987662 11121 1222444544 22234456666
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhh
Q 009911 453 NVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKV 500 (522)
Q Consensus 453 ~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~ 500 (522)
..+........++....- ...........++.+++...|...
T Consensus 545 r~i~~~~~~~~~~~~~~~------~~~~~~~~~v~i~~~~~~~~lg~~ 586 (775)
T TIGR00763 545 RQIEKICRKAAVKLVEQG------EKKKSEAESVVITPDNLKKYLGKP 586 (775)
T ss_pred HHHHHHHHHHHHHHHhcc------CcccCCcccccCCHHHHHHhcCcc
Confidence 666555544444332100 000001113578888887777643
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.3e-16 Score=168.80 Aligned_cols=189 Identities=19% Similarity=0.198 Sum_probs=135.0
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---------- 297 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---------- 297 (522)
+.++++|.+|+||+|++.+++.|..++.. ++.++++||+||||||||++|+++|+.+++
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 45678899999999999999999887754 234467999999999999999999999875
Q ss_pred --------------cEEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 298 --------------TFFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 298 --------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
.++.++++.- .| -..++.+.+.+.. ....||||||+|.|. ...+
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~~----~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~ 134 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAASN----RG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAF 134 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCccc----CC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHH
Confidence 3555554321 11 1224555544432 134699999998874 2345
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|+..++.... .+++|++|+.+..+.+++++||. .+.|..++.++...+++..+....+. ++..+..
T Consensus 135 ~~LLk~LE~p~~----------~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~ 203 (472)
T PRK14962 135 NALLKTLEEPPS----------HVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSF 203 (472)
T ss_pred HHHHHHHHhCCC----------cEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 778888875432 26666677778899999999995 89999999999999998877543322 3344778
Q ss_pred HHHHcCCCcHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~ 457 (522)
|+..+.| +.+++.+++..
T Consensus 204 Ia~~s~G-dlR~aln~Le~ 221 (472)
T PRK14962 204 IAKRASG-GLRDALTMLEQ 221 (472)
T ss_pred HHHHhCC-CHHHHHHHHHH
Confidence 8887765 44444444443
No 63
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.6e-16 Score=170.05 Aligned_cols=192 Identities=19% Similarity=0.174 Sum_probs=141.1
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 46788999999999999999999998853 2344678999999999999999999999653
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
++++++..- ..-..++.+.+.+.. ....|+||||+|.|.. ...
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------~a~ 136 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------HSF 136 (509)
T ss_pred CCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------HHH
Confidence 455554321 111224555444332 1235999999998752 346
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|++.|+..... +.||.+|+.+..+...+++|| ..+.|..++.++....++..+....+. .+..+..
T Consensus 137 naLLk~LEepp~~----------~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ 205 (509)
T PRK14958 137 NALLKTLEEPPSH----------VKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDL 205 (509)
T ss_pred HHHHHHHhccCCC----------eEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7899999875432 667777788889999999999 588899888888888887777654433 3344778
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|+..+.| +.+++.+++..+..
T Consensus 206 ia~~s~G-slR~al~lLdq~ia 226 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQSIA 226 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHHHh
Confidence 8888876 77888888876643
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.73 E-value=4.6e-16 Score=159.69 Aligned_cols=187 Identities=19% Similarity=0.188 Sum_probs=131.8
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEe
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG-----TTFFNV 302 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-----~~~i~v 302 (522)
|.++|.|.+|+|++|++++++.|..++... .. .++||+||||||||++|+++|+++. ..++++
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~----------~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG----------NM--PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC----------CC--ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 778999999999999999999998876431 12 3799999999999999999999983 246677
Q ss_pred ehhhhhhhhhchhHHHHHHHHHH-HHh------hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCC
Q 009911 303 SSATLASKWRGESERMVRCLFDL-ARA------YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTN 375 (522)
Q Consensus 303 ~~~~l~~~~~g~~e~~l~~~f~~-a~~------~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~ 375 (522)
++++..+. ..++..... +.. ....||+|||+|.+.. ..++.|+..|+.....
T Consensus 71 n~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------~aq~aL~~~lE~~~~~--- 129 (319)
T PLN03025 71 NASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------GAQQALRRTMEIYSNT--- 129 (319)
T ss_pred cccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------HHHHHHHHHHhcccCC---
Confidence 76543211 123322221 111 2356999999998753 2346677777654322
Q ss_pred CCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHH
Q 009911 376 EDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNV 454 (522)
Q Consensus 376 ~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~l 454 (522)
+.+|.+||.+..+.++|++|| ..+.|+.|+.++....++..+....+. ++..+..|+..+.| ..+.+.+.
T Consensus 130 -------t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~ 200 (319)
T PLN03025 130 -------TRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNN 200 (319)
T ss_pred -------ceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 456678888889999999999 589999999999999888877654332 33457788887765 33444444
Q ss_pred HH
Q 009911 455 CR 456 (522)
Q Consensus 455 v~ 456 (522)
++
T Consensus 201 Lq 202 (319)
T PLN03025 201 LQ 202 (319)
T ss_pred HH
Confidence 43
No 65
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=5.2e-16 Score=169.65 Aligned_cols=193 Identities=17% Similarity=0.206 Sum_probs=143.3
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++.++.+||+||+|+|||++|+++|+.+++.
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 45788999999999999999999998763 3445789999999999999999999998653
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
+++++... ...-..++.+++.+.. ....||||||+|.|. ....
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~ 136 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAF 136 (709)
T ss_pred ccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHH
Confidence 12222211 1112345666554432 234699999998763 2345
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.||+.|+..... +.||.+|+.+..+...+++|| ..|.|+.++.++....++..+....+. ++..+..
T Consensus 137 NALLKtLEEPp~~----------v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~ 205 (709)
T PRK08691 137 NAMLKTLEEPPEH----------VKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQL 205 (709)
T ss_pred HHHHHHHHhCCCC----------cEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 7899999865432 677777888999999999999 589999999999999998888765443 2334778
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
|++.+.| +.+++.+++..+...
T Consensus 206 Ia~~A~G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 206 LGRAAAG-SMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHh
Confidence 8888875 788888888766543
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=5.4e-16 Score=161.83 Aligned_cols=191 Identities=18% Similarity=0.206 Sum_probs=137.4
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.|.+|+||+|++.+++.|..++.. ++.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45678899999999999999999987753 2344678999999999999999999998642
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
++++++.. ...-..++.+.+.+.. ....|+||||+|.+. ....
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~ 136 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSF 136 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHH
Confidence 22222211 0112234555544332 123599999998874 2345
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-CCcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-SKDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-~~~~dl~~ 438 (522)
+.|++.++.... .+.+|.+|+.++.+.+++++|| ..+.|+.++.++...+++..+..... .++..+..
T Consensus 137 naLLk~lEe~~~----------~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ 205 (363)
T PRK14961 137 NALLKTLEEPPQ----------HIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKL 205 (363)
T ss_pred HHHHHHHhcCCC----------CeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 678888886432 2566667777888999999999 58999999999999999887765443 23345677
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~ 459 (522)
++..+.| +.+++.+++..+.
T Consensus 206 ia~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 206 IAYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 8888876 6777777776654
No 67
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.8e-16 Score=169.62 Aligned_cols=225 Identities=43% Similarity=0.619 Sum_probs=197.2
Q ss_pred ccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEE
Q 009911 256 LPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTI 334 (522)
Q Consensus 256 ~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL 334 (522)
+|+..+..++.. ..++++++++||||+|||++++++|.. +..++.++......++.|.++..+..+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 356666666654 467789999999999999999999999 777788889999999999999999999999999999999
Q ss_pred EEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHh--hcccccccCCC
Q 009911 335 FIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 412 (522)
Q Consensus 335 ~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~P 412 (522)
++||+|.+...+.. .......++...|+..++++. . .. +++++.+|.+..+++++++ ||++.+.+..|
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~-~-------~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK-R-------GQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc-C-------Cc-eEEEeecCCccccChhHhCccccceeeecCCC
Confidence 99999999988865 566678899999999999887 2 24 8888899999999999999 99999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHH
Q 009911 413 NFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCD 492 (522)
Q Consensus 413 d~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~d 492 (522)
+...+.+|+........+..+.++..++..+.||+++++..+|+++.+.+.++.+ ........++.+|
T Consensus 151 ~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------------~~~~~~~~~~~~~ 218 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------------DLVGEYIGVTEDD 218 (494)
T ss_pred CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------------ccCcccccccHHH
Confidence 9999999999998888877789999999999999999999999999999988863 1112356899999
Q ss_pred HHHHHHhhCCC
Q 009911 493 FEEALTKVQRS 503 (522)
Q Consensus 493 f~~AL~~~~~s 503 (522)
|.++|+++.++
T Consensus 219 ~~~~l~~~~~~ 229 (494)
T COG0464 219 FEEALKKVLPS 229 (494)
T ss_pred HHHHHHhcCcc
Confidence 99999998653
No 68
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.72 E-value=6.1e-16 Score=151.68 Aligned_cols=183 Identities=22% Similarity=0.265 Sum_probs=127.5
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------c
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT------T 298 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~------~ 298 (522)
.+.|.++|.+.+|+|++|++.+.+.|...+.. +...++|||||||||||+.|+++|+++.. .
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 35688999999999999999999999998853 12238999999999999999999999966 3
Q ss_pred EEEeehhhhhhhhhchhHHHHHHHHHHHHh---------hCC-cEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 299 FFNVSSATLASKWRGESERMVRCLFDLARA---------YAP-STIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 299 ~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~---------~~p-~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
+.++++++..+..... ..+ .-|..... +.| .||+|||.|.|.. ..++.|...|+.
T Consensus 91 vl~lnaSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts------------daq~aLrr~mE~ 155 (346)
T KOG0989|consen 91 VLELNASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS------------DAQAALRRTMED 155 (346)
T ss_pred hhhhcccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH------------HHHHHHHHHHhc
Confidence 3444444433321111 111 11222221 112 5999999998864 356889999987
Q ss_pred cCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCC
Q 009911 369 VNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDG 445 (522)
Q Consensus 369 ~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~G 445 (522)
.... +.+|..||+.+.|...+.+||.+ +.|+....+.....|+.......+. ++..+..|+..++|
T Consensus 156 ~s~~----------trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 156 FSRT----------TRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred cccc----------eEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 5433 78999999999999999999975 5565555555555555555444433 23346778887776
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.72 E-value=2.6e-16 Score=166.99 Aligned_cols=187 Identities=26% Similarity=0.372 Sum_probs=130.5
Q ss_pred hhccCCCCCcccccCcHHHHHH---HHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 228 VLETSPGVRWDDVAGLTEAKRL---LEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~---L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
+.+++.+.+|+|++|++++... |..++.. ....++||+||||||||++|+++|+.++..|+.+++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3466788999999999998655 7776642 122489999999999999999999999999999987
Q ss_pred hhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCc
Q 009911 305 ATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSR 380 (522)
Q Consensus 305 ~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 380 (522)
.... ...++.+++.+. .....||||||+|.+. ...++.|+..++.-
T Consensus 70 ~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le~~----------- 119 (413)
T PRK13342 70 VTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVEDG----------- 119 (413)
T ss_pred cccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhhcC-----------
Confidence 6421 122444554443 2246799999999874 23446677766531
Q ss_pred ceEEEEee-cCCC-CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC--C--CCcccHHHHHHHcCCCcHHHHHHH
Q 009911 381 KIVMVLAA-TNFP-WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE--V--SKDVDIDEVARRTDGYSGDDLTNV 454 (522)
Q Consensus 381 ~~VivIat-tn~p-~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~--l--~~~~dl~~LA~~t~Gys~~dI~~l 454 (522)
. +++|++ |.++ ..++++|++|| ..+.|+.++.++...+++..+.... + ..+..+..|+..+.| ..+.+.++
T Consensus 120 ~-iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~ 196 (413)
T PRK13342 120 T-ITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNL 196 (413)
T ss_pred c-EEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHH
Confidence 1 445544 4444 68999999999 6899999999999999998775421 1 122335677777755 45555566
Q ss_pred HHHHH
Q 009911 455 CRDAS 459 (522)
Q Consensus 455 v~~A~ 459 (522)
+..+.
T Consensus 197 Le~~~ 201 (413)
T PRK13342 197 LELAA 201 (413)
T ss_pred HHHHH
Confidence 65543
No 70
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=3.6e-16 Score=178.35 Aligned_cols=212 Identities=20% Similarity=0.297 Sum_probs=152.6
Q ss_pred HHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----
Q 009911 220 LAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---- 295 (522)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---- 295 (522)
..+.+..++.+...+-.+++++|.++..+.+.+.+.. +...++||+||||||||++|+.+|..+
T Consensus 169 ~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~ 236 (852)
T TIGR03345 169 ALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGD 236 (852)
T ss_pred hHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4444555666666777899999999987777775532 223589999999999999999999987
Q ss_pred ------CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHh
Q 009911 296 ------GTTFFNVSSATLA--SKWRGESERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 296 ------g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~l 366 (522)
+..++.++...+. ..+.|+.+..++.+|+.+.. ..+.||||||||.|.+.++..+..+. -+.|+..+
T Consensus 237 v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~n~Lkp~l 312 (852)
T TIGR03345 237 VPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDA----ANLLKPAL 312 (852)
T ss_pred CCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccH----HHHhhHHh
Confidence 3568888887776 36889999999999998865 35789999999999875533222221 12233333
Q ss_pred hhcCCCCCCCCCCcceEEEEeecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-----CCcccH
Q 009911 367 DGVNNTGTNEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-----SKDVDI 436 (522)
Q Consensus 367 d~~~~~~~~~~~~~~~VivIattn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-----~~~~dl 436 (522)
. . ..+.+|++|+.. ..+|++|.|||. .|.|+.|+.+++..||+.+...+.. ..+..+
T Consensus 313 ~----~--------G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al 379 (852)
T TIGR03345 313 A----R--------GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAV 379 (852)
T ss_pred h----C--------CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHH
Confidence 2 1 227788888753 468999999996 8999999999999998766644322 134457
Q ss_pred HHHHHHcCCCcH-----HHHHHHHHHHHH
Q 009911 437 DEVARRTDGYSG-----DDLTNVCRDASL 460 (522)
Q Consensus 437 ~~LA~~t~Gys~-----~dI~~lv~~A~~ 460 (522)
..++..+.+|.. ...-.|+.+|..
T Consensus 380 ~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 380 VAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred HHHHHHcccccccccCccHHHHHHHHHHH
Confidence 788888887753 444556666644
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=5.9e-16 Score=165.23 Aligned_cols=193 Identities=17% Similarity=0.192 Sum_probs=144.3
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---------- 297 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---------- 297 (522)
+..+|.+.+|+||+|++.+++.|..++.. ++.++++||+||+|+|||++|+.+|+.+++
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 45678999999999999999999887653 345579999999999999999999997643
Q ss_pred --------------cEEEeehhhhhhhhhchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 298 --------------TFFNVSSATLASKWRGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 298 --------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
.++++++.+-. .-..++.+.+.+... ...|+||||+|.|. ...+
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~ 133 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAF 133 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHH
Confidence 34555554211 123356666555432 34699999998774 2356
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|++.|+..... +.+|.+|+.+..+.+.+++|| ..+.|..++.++....++..+....+. ++..+..
T Consensus 134 NaLLK~LEePp~~----------v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~l 202 (491)
T PRK14964 134 NALLKTLEEPAPH----------VKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKL 202 (491)
T ss_pred HHHHHHHhCCCCC----------eEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8899999875432 667777788889999999999 479999999999998888877654433 3445778
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
|++.++| +.+++.+++..+...
T Consensus 203 Ia~~s~G-slR~alslLdqli~y 224 (491)
T PRK14964 203 IAENSSG-SMRNALFLLEQAAIY 224 (491)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh
Confidence 8888876 778888888776543
No 72
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=5.6e-16 Score=174.95 Aligned_cols=191 Identities=20% Similarity=0.139 Sum_probs=136.9
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++..+.+||+||+|||||++|++||+.+++.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 45789999999999999999999988753 2344678999999999999999999999752
Q ss_pred -----------------EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHH
Q 009911 299 -----------------FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRR 357 (522)
Q Consensus 299 -----------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~ 357 (522)
|++++..+.. .-..++.+.+.+. .....|+||||+|.|. ..
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~ 135 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQ 135 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HH
Confidence 2223221110 0112333322221 2334699999999885 24
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccH
Q 009911 358 VKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDI 436 (522)
Q Consensus 358 ~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl 436 (522)
..+.||+.|+..... ++||.+|+.++.|.+.|++|| ..+.|..++.++...+|+..+....+. .+..+
T Consensus 136 a~NaLLK~LEEpP~~----------~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal 204 (824)
T PRK07764 136 GFNALLKIVEEPPEH----------LKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVL 204 (824)
T ss_pred HHHHHHHHHhCCCCC----------eEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 568899999976543 667777788888999999999 589999999999998888887654443 23335
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHH
Q 009911 437 DEVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 437 ~~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
..|+..+.| +.+++.++++...
T Consensus 205 ~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 205 PLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 667777775 6677777776543
No 73
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.71 E-value=1.5e-16 Score=173.21 Aligned_cols=231 Identities=22% Similarity=0.294 Sum_probs=154.6
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC--------- 295 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l--------- 295 (522)
.+.+.+++++.+|++++|.+...+.|+..+..+ .+.+|||+||||||||++|+++++.+
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~ 119 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGP------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK 119 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcC
Confidence 346677888999999999999999998765322 23589999999999999999998753
Q ss_pred -CCcEEEeehhhhhhhhhchhHHHHH----------HHHH----------HHHhhCCcEEEEechhhhhhccCCCCchhh
Q 009911 296 -GTTFFNVSSATLASKWRGESERMVR----------CLFD----------LARAYAPSTIFIDEIDSLCNARGASGEHES 354 (522)
Q Consensus 296 -g~~~i~v~~~~l~~~~~g~~e~~l~----------~~f~----------~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~ 354 (522)
+.+|+.++|+.......+..+..+. ..|. .......++|||||||.|.
T Consensus 120 ~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~----------- 188 (531)
T TIGR02902 120 EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH----------- 188 (531)
T ss_pred CCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC-----------
Confidence 3689999986421100000000000 0000 0111234799999998774
Q ss_pred HHHHHHHHHHHhhhcCCC-------CCC------------CCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHH
Q 009911 355 SRRVKSELLVQVDGVNNT-------GTN------------EDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFE 415 (522)
Q Consensus 355 ~~~~~~~Ll~~ld~~~~~-------~~~------------~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~ 415 (522)
...++.|+..|+.-... ..+ .....+..+|++||+.|+.+++++++||. .++|+.++.+
T Consensus 189 -~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~e 266 (531)
T TIGR02902 189 -PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV-EIFFRPLLDE 266 (531)
T ss_pred -HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhh-eeeCCCCCHH
Confidence 34567777777542100 000 00122335666778889999999999995 7889999999
Q ss_pred HHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHH
Q 009911 416 SRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFE 494 (522)
Q Consensus 416 ~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~ 494 (522)
++..|++..++...+. ++..++.|+..+. +++++.++|+.|...+..+. ...|+.+|+.
T Consensus 267 ei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~------------------~~~It~~dI~ 326 (531)
T TIGR02902 267 EIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG------------------RKRILAEDIE 326 (531)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC------------------CcEEcHHHHH
Confidence 9999999988765543 2233556666543 78999999998876665432 3469999999
Q ss_pred HHHHhh
Q 009911 495 EALTKV 500 (522)
Q Consensus 495 ~AL~~~ 500 (522)
.++..-
T Consensus 327 ~vl~~~ 332 (531)
T TIGR02902 327 WVAENG 332 (531)
T ss_pred HHhCCc
Confidence 998743
No 74
>PRK04195 replication factor C large subunit; Provisional
Probab=99.71 E-value=2.8e-16 Score=169.98 Aligned_cols=195 Identities=24% Similarity=0.320 Sum_probs=141.1
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.|+++|.+.+|+||+|.+.+++.|..++.... .+.+.+++||+||||||||++|+++|++++..++++++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 57899999999999999999999999885422 1234579999999999999999999999999999999876
Q ss_pred hhhhhhchhHHHHHHHHHHHHh------hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCc
Q 009911 307 LASKWRGESERMVRCLFDLARA------YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSR 380 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~------~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 380 (522)
... ...+..+...+.. ..+.||+|||+|.|.... .......|+..++...
T Consensus 75 ~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d~~~~~aL~~~l~~~~---------- 130 (482)
T PRK04195 75 QRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------DRGGARAILELIKKAK---------- 130 (482)
T ss_pred ccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------chhHHHHHHHHHHcCC----------
Confidence 432 1123333322221 246799999999886421 1123455666665211
Q ss_pred ceEEEEeecCCCCCccH-HHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 381 KIVMVLAATNFPWDIDE-ALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 381 ~~VivIattn~p~~ld~-aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
..||+++|.++.+.. .|++|+ ..|.|+.|+..+...+++..+....+. ++..+..|+..+.| ||+.+++..
T Consensus 131 --~~iIli~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 131 --QPIILTANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred --CCEEEeccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 346677888888887 788888 589999999999999999888654432 23447788887665 677766654
Q ss_pred HH
Q 009911 459 SL 460 (522)
Q Consensus 459 ~~ 460 (522)
..
T Consensus 204 q~ 205 (482)
T PRK04195 204 QA 205 (482)
T ss_pred HH
Confidence 43
No 75
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.1e-15 Score=167.39 Aligned_cols=193 Identities=18% Similarity=0.192 Sum_probs=140.0
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++.++.+||+||+|+|||++|+++|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 45778999999999999999999998754 2344678999999999999999999998752
Q ss_pred --------------------EEEeehhhhhhhhhchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhh
Q 009911 299 --------------------FFNVSSATLASKWRGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHES 354 (522)
Q Consensus 299 --------------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~ 354 (522)
++++++..- ..-..++.+.+.+... .-.|+||||+|.|..
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------- 138 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------- 138 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH----------
Confidence 233332210 1112355555544321 135999999988752
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-Cc
Q 009911 355 SRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KD 433 (522)
Q Consensus 355 ~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~ 433 (522)
...+.||+.|+..... +.+|.+|+.+..+...+++|| ..+.|..++.++....++..+....+. ++
T Consensus 139 --~a~NaLLKtLEEPP~~----------~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~ 205 (618)
T PRK14951 139 --TAFNAMLKTLEEPPEY----------LKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEP 205 (618)
T ss_pred --HHHHHHHHhcccCCCC----------eEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 3467888888864432 667777788888999999999 589999999999988888777654433 23
Q ss_pred ccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009911 434 VDIDEVARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 434 ~dl~~LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
..+..|+..++| +.+++.+++..+...
T Consensus 206 ~AL~~La~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 206 QALRLLARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 347788888886 777777777655443
No 76
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.8e-15 Score=164.76 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=134.7
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT-------- 298 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~-------- 298 (522)
.+.++|.+.+|+||+|++.+++.|..++.. ++..+.+||+||+|||||++|+++|+.+.+.
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 356789999999999999999999998853 2334689999999999999999999999753
Q ss_pred ----------------EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 299 ----------------FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 299 ----------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
++++++..- .+ -..++.+.+.+. .....||||||+|.|. ...
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~----~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a 135 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASN----RG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REA 135 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccc----cC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHH
Confidence 344433210 01 112333322221 2234699999999874 234
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-CCcccHH
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-SKDVDID 437 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-~~~~dl~ 437 (522)
++.|++.|+.... .+++|.+|+.+..+...|++||. .|.|+.++.++...+|+..+....+ .++..+.
T Consensus 136 ~naLLk~LEEP~~----------~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~ 204 (624)
T PRK14959 136 FNALLKTLEEPPA----------RVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVR 204 (624)
T ss_pred HHHHHHHhhccCC----------CEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6888888886432 27777888888899999999995 7899999999999888877765443 2334467
Q ss_pred HHHHHcCCCcHHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~ 457 (522)
.|+..+.| +.+++.+++..
T Consensus 205 lIA~~s~G-dlR~Al~lLeq 223 (624)
T PRK14959 205 LIARRAAG-SVRDSMSLLGQ 223 (624)
T ss_pred HHHHHcCC-CHHHHHHHHHH
Confidence 78887775 44555555543
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.7e-15 Score=162.81 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=143.4
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE-------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF------- 300 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i------- 300 (522)
+.++|.+.+|+|++|++.+.+.|..++.. ++.++++||+||+|||||++|+++|+.+++...
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 45778999999999999999999887643 244579999999999999999999999965210
Q ss_pred -----Eeehhhhhhhh----------hchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHHHH
Q 009911 301 -----NVSSATLASKW----------RGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVKSE 361 (522)
Q Consensus 301 -----~v~~~~l~~~~----------~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~ 361 (522)
.-+|..+.... .......++.+++.+... ...|+||||+|.+. ...++.
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~na 147 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNA 147 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHH
Confidence 00111111100 011233466666665432 24699999998774 244678
Q ss_pred HHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHH
Q 009911 362 LLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVA 440 (522)
Q Consensus 362 Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA 440 (522)
|++.|+.... .+++|.+|+.++.+.+++++|| ..+.|..++.++...+++..+....+. ++..+..|+
T Consensus 148 LLk~LEepp~----------~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 148 LLKTLEEPPP----------HIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred HHHHHhhcCC----------CEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8888885432 2667777788889999999999 479999999999999999888765443 234477899
Q ss_pred HHcCCCcHHHHHHHHHHHHHH
Q 009911 441 RRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 441 ~~t~Gys~~dI~~lv~~A~~~ 461 (522)
..++| +.+++.++++.+...
T Consensus 217 ~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHh
Confidence 98887 778888888776544
No 78
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.69 E-value=2.8e-16 Score=162.54 Aligned_cols=183 Identities=26% Similarity=0.374 Sum_probs=137.2
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhcc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh-hhhc-hh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGI--RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS-KWRG-ES 315 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~--~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~-~~~g-~~ 315 (522)
|+|++++++.+..++........+.... ..++++|||+||||||||++|+++|..++.+|+.++++.+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 8999999999988887543222222211 234589999999999999999999999999999999887763 5666 45
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 009911 316 ERMVRCLFDLA--------------------------------------------------------------------- 326 (522)
Q Consensus 316 e~~l~~~f~~a--------------------------------------------------------------------- 326 (522)
+..++.+|..|
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 56666655544
Q ss_pred ----------------------------------------------------------------------HhhCCcEEEE
Q 009911 327 ----------------------------------------------------------------------RAYAPSTIFI 336 (522)
Q Consensus 327 ----------------------------------------------------------------------~~~~p~VL~I 336 (522)
+..+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0123469999
Q ss_pred echhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC----CCCccHHHHhhcccccccCCC
Q 009911 337 DEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF----PWDIDEALRRRLEKRIYIPLP 412 (522)
Q Consensus 337 DEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~----p~~ld~aL~rRf~~~i~i~~P 412 (522)
||||+|+.+....+.+.....++..||..+++-.-..........+++|||+..+ |.+|-|.|.-||...+.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 9999999765433444455679999999999854433323345566889888753 567889999999999999999
Q ss_pred CHHHHHHHHH
Q 009911 413 NFESRKELIK 422 (522)
Q Consensus 413 d~~~R~~Ilk 422 (522)
+.++...||.
T Consensus 334 ~~edL~rILt 343 (441)
T TIGR00390 334 TTDDFERILT 343 (441)
T ss_pred CHHHHHHHhc
Confidence 9999998884
No 79
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.9e-16 Score=166.26 Aligned_cols=238 Identities=21% Similarity=0.253 Sum_probs=158.4
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh---------
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS--------- 309 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~--------- 309 (522)
|-.|++++|+.+.|++...... ..... .-++|+||||+|||+|++.||+.+|..|+.++..-+.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~----~~~kG--pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT----KKLKG--PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh----ccCCC--cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 5789999999999999763222 12222 36889999999999999999999999999999765432
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCC-----CCCCCcceEE
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGT-----NEDGSRKIVM 384 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~-----~~~~~~~~Vi 384 (522)
.|.|.....+-+-+..|....| |++|||||++...-... --++||..+|--.+... ....+...|+
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD--------PaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD--------PASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC--------hHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 3555555555555666766665 88999999997553211 12567776663332221 1233556799
Q ss_pred EEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHc-----cCCCC-CcccHH--HHHHHcCCCcHHHHHHHHH
Q 009911 385 VLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLK-----TVEVS-KDVDID--EVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 385 vIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~-----~~~l~-~~~dl~--~LA~~t~Gys~~dI~~lv~ 456 (522)
||+|+|..+.++.+|+.|++ .|.++-++.++..+|-+.++- ...+. .++.+. .|-.. |+...+
T Consensus 469 FiaTANsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~i--------I~~YTR 539 (782)
T COG0466 469 FIATANSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDI--------IRYYTR 539 (782)
T ss_pred EEeecCccccCChHHhccee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHH--------HHHHhH
Confidence 99999999999999999995 999999999999999998762 22232 122221 12222 333445
Q ss_pred HHHHHHHHHHhhcCChHHHhhccccccCC-CCccHHHHHHHHHhh
Q 009911 457 DASLNGMRRKIAGKTRDEIKNMSKDEISK-DPVAMCDFEEALTKV 500 (522)
Q Consensus 457 ~A~~~a~~r~~~~~~~~~i~~~~~~~~~~-~~lt~~df~~AL~~~ 500 (522)
+|....+.|.+..+....+.++-...... ..++..++.+.|...
T Consensus 540 EAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 540 EAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 55555555555444444444433333333 367777777777654
No 80
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.68 E-value=6.8e-16 Score=176.54 Aligned_cols=181 Identities=22% Similarity=0.339 Sum_probs=135.5
Q ss_pred HHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----
Q 009911 220 LAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---- 295 (522)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---- 295 (522)
..+.+..++.+...+-.+++++|.+...+.+.+.+.. +...++||+||||||||++|+++|..+
T Consensus 160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 227 (857)
T PRK10865 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGE 227 (857)
T ss_pred HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 3344445556666667788999999987777776642 233589999999999999999999998
Q ss_pred ------CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHh
Q 009911 296 ------GTTFFNVSSATLA--SKWRGESERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 296 ------g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~l 366 (522)
+.+++.++...+. .+|.|+.+..++.+|+.... ..++||||||||.|.+.....+.... .+.|...+
T Consensus 228 vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~----~~~lkp~l 303 (857)
T PRK10865 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDA----GNMLKPAL 303 (857)
T ss_pred CchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhH----HHHhcchh
Confidence 7789999888776 46889999999999987643 56889999999999866533332222 22222222
Q ss_pred hhcCCCCCCCCCCcceEEEEeecCCCC-----CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC
Q 009911 367 DGVNNTGTNEDGSRKIVMVLAATNFPW-----DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE 429 (522)
Q Consensus 367 d~~~~~~~~~~~~~~~VivIattn~p~-----~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~ 429 (522)
. . ..+.+|++|+..+ .+|+++.|||+ .|.++.|+.+++..|++.....+.
T Consensus 304 ~----~--------g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 304 A----R--------GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred h----c--------CCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 1 1 2277888887764 58999999997 689999999999999997765543
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=3.3e-15 Score=161.87 Aligned_cols=191 Identities=22% Similarity=0.248 Sum_probs=137.5
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT--------- 297 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~--------- 297 (522)
.+.++|.|.+|+||+|++.+++.|..++.. ++.++++||+||+|+|||++|+++|+.+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 467889999999999999999999987743 233478999999999999999999999854
Q ss_pred ---------------cEEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 298 ---------------TFFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 298 ---------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
.++++++... .+ -..++.+.+.+.. ....|++|||+|.|.. ..
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~----ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------~A 135 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASN----NG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------SA 135 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccc----cC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------HH
Confidence 2233332210 11 1224555444432 2245999999998742 24
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-CCcccHH
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-SKDVDID 437 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-~~~~dl~ 437 (522)
.+.|++.|+..... +++|.+|+.+..+.+++++||. .+.|+.++..+....++..+....+ .++..+.
T Consensus 136 ~NaLLKtLEEPp~~----------tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~ 204 (605)
T PRK05896 136 WNALLKTLEEPPKH----------VVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAID 204 (605)
T ss_pred HHHHHHHHHhCCCc----------EEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 57899999865432 6777777888999999999995 8999999999999888877755432 2233467
Q ss_pred HHHHHcCCCcHHHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~A 458 (522)
.|+..+.| +.+++.+++..+
T Consensus 205 ~La~lS~G-dlR~AlnlLekL 224 (605)
T PRK05896 205 KIADLADG-SLRDGLSILDQL 224 (605)
T ss_pred HHHHHcCC-cHHHHHHHHHHH
Confidence 78888876 566666666653
No 82
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.4e-15 Score=162.05 Aligned_cols=190 Identities=21% Similarity=0.165 Sum_probs=136.4
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT---------- 298 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~---------- 298 (522)
.++|.+.+|+||+|++.+++.|..++.. ++.++.+||+||+|||||++|+++|+.+++.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 4678999999999999999999998853 2344568999999999999999999988642
Q ss_pred ----------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 299 ----------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 299 ----------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
++++++.... .-..++.+.+.+.. ....|+||||+|.|. ...
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A 134 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAG 134 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHH
Confidence 2333322110 11223444333321 234599999998774 236
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHH
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDID 437 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~ 437 (522)
++.||+.|+..... +++|.+|+.+..+.++|++|| ..+.|..++.++....++..+....+. ++..+.
T Consensus 135 ~NALLK~LEEpp~~----------~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~ 203 (584)
T PRK14952 135 FNALLKIVEEPPEH----------LIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYP 203 (584)
T ss_pred HHHHHHHHhcCCCC----------eEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78899999875432 677777788899999999999 589999999999888888877654432 233456
Q ss_pred HHHHHcCCCcHHHHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
.++..+.| +.+++.++++.+.
T Consensus 204 ~Ia~~s~G-dlR~aln~Ldql~ 224 (584)
T PRK14952 204 LVIRAGGG-SPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHcCC-CHHHHHHHHHHHH
Confidence 67776664 6777777777654
No 83
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.67 E-value=2e-15 Score=172.69 Aligned_cols=213 Identities=21% Similarity=0.307 Sum_probs=155.7
Q ss_pred HHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----
Q 009911 220 LAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---- 295 (522)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---- 295 (522)
..+.+..++.+....-.|+.++|.++..+.+.+.+.. +..+++||+||||||||++|+.+|..+
T Consensus 161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~ 228 (821)
T CHL00095 161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRD 228 (821)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4455566666666677799999999999999987753 334699999999999999999999987
Q ss_pred ------CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhh
Q 009911 296 ------GTTFFNVSSATLA--SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 296 ------g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld 367 (522)
+.+++.++...+. .+|.|+.+..++.+|+.+....+.||||||||.|.+.....+... +.+.|...+.
T Consensus 229 vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~----~a~lLkp~l~ 304 (821)
T CHL00095 229 VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAID----AANILKPALA 304 (821)
T ss_pred CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCccc----HHHHhHHHHh
Confidence 4789999998886 478899999999999999888889999999999987654332221 2222222222
Q ss_pred hcCCCCCCCCCCcceEEEEeecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHcc----CCC-CCcccHH
Q 009911 368 GVNNTGTNEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKT----VEV-SKDVDID 437 (522)
Q Consensus 368 ~~~~~~~~~~~~~~~VivIattn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~----~~l-~~~~dl~ 437 (522)
. ..+.+|++|+.. ...+++|.+||. .|.++.|+.++...|++..... +.+ ..+..+.
T Consensus 305 ----r--------g~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~ 371 (821)
T CHL00095 305 ----R--------GELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALE 371 (821)
T ss_pred ----C--------CCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1 226777777765 257899999996 6899999999999998865432 122 2334467
Q ss_pred HHHHHcCCCcH-----HHHHHHHHHHHHH
Q 009911 438 EVARRTDGYSG-----DDLTNVCRDASLN 461 (522)
Q Consensus 438 ~LA~~t~Gys~-----~dI~~lv~~A~~~ 461 (522)
.++..+.+|.+ ...-.++++|...
T Consensus 372 ~i~~ls~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 372 AAAKLSDQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred HHHHHhhccCccccCchHHHHHHHHHHHH
Confidence 77888887754 3344566665543
No 84
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=5.3e-15 Score=159.59 Aligned_cols=190 Identities=20% Similarity=0.227 Sum_probs=136.7
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|..++.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 34788999999999999999999998764 2344667999999999999999999998541
Q ss_pred --------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHH
Q 009911 299 --------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKS 360 (522)
Q Consensus 299 --------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~ 360 (522)
++++++..- ..-..++.+...+.. ..+.||||||+|.+. ...++
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~n 134 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFN 134 (504)
T ss_pred ChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHH
Confidence 444443210 112224444333322 245699999998653 34567
Q ss_pred HHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHH
Q 009911 361 ELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEV 439 (522)
Q Consensus 361 ~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~L 439 (522)
.|++.|+.... .+++|.+++.+..+.+.+++||. .+.|..++.++....++..+....+. ++..+..|
T Consensus 135 aLLk~LEep~~----------~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~i 203 (504)
T PRK14963 135 ALLKTLEEPPE----------HVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLV 203 (504)
T ss_pred HHHHHHHhCCC----------CEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88888876432 26677778888999999999995 89999999999999998877654433 33446788
Q ss_pred HHHcCCCcHHHHHHHHHHH
Q 009911 440 ARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 440 A~~t~Gys~~dI~~lv~~A 458 (522)
+..+.| +.+++.++++.+
T Consensus 204 a~~s~G-dlR~aln~Lekl 221 (504)
T PRK14963 204 ARLADG-AMRDAESLLERL 221 (504)
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 888876 455666666544
No 85
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.67 E-value=7.3e-15 Score=157.69 Aligned_cols=245 Identities=18% Similarity=0.286 Sum_probs=155.2
Q ss_pred CCCCccccc-Cc--HHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeeh
Q 009911 233 PGVRWDDVA-GL--TEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSS 304 (522)
Q Consensus 233 ~~~~~~di~-G~--~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~ 304 (522)
+..+|++++ |. ..+...+..+...| ....++++||||+|+|||+|++++++++ +..++.+++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 455788754 42 23455555544322 1233579999999999999999999998 567889999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009911 305 ATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVM 384 (522)
Q Consensus 305 ~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Vi 384 (522)
..+...+..........-|.. ....+.+|+|||||.+..+. ..+..|+..++.+...+. .+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~-~~~~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~l~~~~~--------~i 247 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKE-KYRSVDVLLIDDIQFLAGKE----------RTQEEFFHTFNALHEAGK--------QI 247 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHH-HHhcCCEEEEehhhhhcCCH----------HHHHHHHHHHHHHHHCCC--------cE
Confidence 887765543322111112221 12246899999999885432 123455555555543322 35
Q ss_pred EEeecCCCCC---ccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 385 VLAATNFPWD---IDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 385 vIattn~p~~---ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
||++...|.. +++.|++||. ..+.+..|+.++|..|++..+....+. ++..++.||..+.| +.+.|..+++..
T Consensus 248 iits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 248 VLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred EEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 5655555544 6789999995 478999999999999999988754332 33447889998886 777888888766
Q ss_pred HHHHHHHHhhcCChHHHhhccccc--cCCCCccHHHHHHHHHhhCCCCCHHHH
Q 009911 459 SLNGMRRKIAGKTRDEIKNMSKDE--ISKDPVAMCDFEEALTKVQRSVSQADI 509 (522)
Q Consensus 459 ~~~a~~r~~~~~~~~~i~~~~~~~--~~~~~lt~~df~~AL~~~~~svs~~~~ 509 (522)
...+.... ..++.+.+.+.-.+. .....++.+++.+++.+.- .++.+++
T Consensus 327 ~~~~~~~~-~~it~~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~-~i~~~~l 377 (450)
T PRK00149 327 IAYASLTG-KPITLELAKEALKDLLAAQKKKITIENIQKVVAEYY-NIKVSDL 377 (450)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHc-CCCHHHH
Confidence 54443322 234544444433322 1233577777777777766 5555555
No 86
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.67 E-value=5.2e-16 Score=160.64 Aligned_cols=183 Identities=26% Similarity=0.383 Sum_probs=137.0
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccC--CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh-hhhc-hh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIR--RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS-KWRG-ES 315 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~--~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~-~~~g-~~ 315 (522)
|+|++++++.+..++........+..+.+ ..++++||+||||||||++|+++|..++.+|+.++++.+.. .|.| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 99999999999988865322222222222 23479999999999999999999999999999999987774 6777 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 009911 316 ERMVRCLFDLAR-------------------------------------------------------------------- 327 (522)
Q Consensus 316 e~~l~~~f~~a~-------------------------------------------------------------------- 327 (522)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 556666655550
Q ss_pred ----------------------------------------------------------------------hhCCcEEEEe
Q 009911 328 ----------------------------------------------------------------------AYAPSTIFID 337 (522)
Q Consensus 328 ----------------------------------------------------------------------~~~p~VL~ID 337 (522)
...-+|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0134699999
Q ss_pred chhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC----CCCccHHHHhhcccccccCCCC
Q 009911 338 EIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF----PWDIDEALRRRLEKRIYIPLPN 413 (522)
Q Consensus 338 EiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~----p~~ld~aL~rRf~~~i~i~~Pd 413 (522)
|||+|+...+..+.+.....++..||..+++-.-.......+..+|+|||+..+ |.+|-|.|.-||...+.+..++
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~ 336 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDALT 336 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCCC
Confidence 999999775433444455679999999999854433323334566888888753 5678899999999999999999
Q ss_pred HHHHHHHHH
Q 009911 414 FESRKELIK 422 (522)
Q Consensus 414 ~~~R~~Ilk 422 (522)
.++...||.
T Consensus 337 ~~dL~~ILt 345 (443)
T PRK05201 337 EEDFVRILT 345 (443)
T ss_pred HHHHHHHhc
Confidence 999999884
No 87
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.67 E-value=2.9e-15 Score=171.89 Aligned_cols=212 Identities=23% Similarity=0.335 Sum_probs=152.7
Q ss_pred HHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----
Q 009911 220 LAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---- 295 (522)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---- 295 (522)
..+.+..++.+...+-.++.++|.+...+.+.+.+.. +...+++|+||||||||++|+++|..+
T Consensus 155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 222 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD 222 (852)
T ss_pred HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence 4444555666667777889999999988888776642 233589999999999999999999986
Q ss_pred ------CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHhh-CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHh
Q 009911 296 ------GTTFFNVSSATLA--SKWRGESERMVRCLFDLARAY-APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 296 ------g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~l 366 (522)
+.+++.++...+. .+|.|+.+..++.+|+.+... .+.||||||||.|.+.....+. ....+.|...+
T Consensus 223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~----~d~~~~Lk~~l 298 (852)
T TIGR03346 223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA----MDAGNMLKPAL 298 (852)
T ss_pred CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch----hHHHHHhchhh
Confidence 6788999888775 468899999999999988654 5899999999999864322221 12222222222
Q ss_pred hhcCCCCCCCCCCcceEEEEeecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCC-----cccH
Q 009911 367 DGVNNTGTNEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSK-----DVDI 436 (522)
Q Consensus 367 d~~~~~~~~~~~~~~~VivIattn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~-----~~dl 436 (522)
.. ..+.+|++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+...+.... +..+
T Consensus 299 ----~~--------g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i 365 (852)
T TIGR03346 299 ----AR--------GELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAI 365 (852)
T ss_pred ----hc--------CceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence 11 227788888766 357999999996 689999999999999998766554432 3345
Q ss_pred HHHHHHcCCCcH-----HHHHHHHHHHHH
Q 009911 437 DEVARRTDGYSG-----DDLTNVCRDASL 460 (522)
Q Consensus 437 ~~LA~~t~Gys~-----~dI~~lv~~A~~ 460 (522)
..++..+.+|.. ..--.|+++|..
T Consensus 366 ~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 366 VAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred HHHHHhccccccccCCchHHHHHHHHHHH
Confidence 667777777643 344455665544
No 88
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.3e-15 Score=162.26 Aligned_cols=199 Identities=20% Similarity=0.210 Sum_probs=149.4
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-------E
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTF-------F 300 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~-------i 300 (522)
+..+|++..|+|++|++.+.+.|..++.. .+..++.||+||.|||||++||.+|+.+++.- -
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 45679999999999999999999999865 34557899999999999999999999997642 1
Q ss_pred Ee-ehhhhhhh-hhc---------hhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHH
Q 009911 301 NV-SSATLASK-WRG---------ESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQ 365 (522)
Q Consensus 301 ~v-~~~~l~~~-~~g---------~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ 365 (522)
.+ .|..+... +.. ..-..++.+.+.+.. ....|++|||+|.| +....+.||+.
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKT 142 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKT 142 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhcc
Confidence 11 11111111 010 011234555554432 23459999999665 45677999999
Q ss_pred hhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCc-ccHHHHHHHcC
Q 009911 366 VDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKD-VDIDEVARRTD 444 (522)
Q Consensus 366 ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~-~dl~~LA~~t~ 444 (522)
+++.... |++|.+|..+..++..+++||+ ++.|...+.++....|...+....+.-+ ..+.-+|+..+
T Consensus 143 LEEPP~h----------V~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~ 211 (515)
T COG2812 143 LEEPPSH----------VKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE 211 (515)
T ss_pred cccCccC----------eEEEEecCCcCcCchhhhhccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC
Confidence 9876543 8999999999999999999995 8899999999999999988876665533 44778888888
Q ss_pred CCcHHHHHHHHHHHHHH
Q 009911 445 GYSGDDLTNVCRDASLN 461 (522)
Q Consensus 445 Gys~~dI~~lv~~A~~~ 461 (522)
| |.+|...++.+|...
T Consensus 212 G-s~RDalslLDq~i~~ 227 (515)
T COG2812 212 G-SLRDALSLLDQAIAF 227 (515)
T ss_pred C-ChhhHHHHHHHHHHc
Confidence 7 789999999887655
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.67 E-value=8.9e-15 Score=155.03 Aligned_cols=243 Identities=19% Similarity=0.296 Sum_probs=153.6
Q ss_pred CCCccc-ccCcHH--HHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeehh
Q 009911 234 GVRWDD-VAGLTE--AKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSSA 305 (522)
Q Consensus 234 ~~~~~d-i~G~~~--vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~~ 305 (522)
..+|++ ++|... +...+.++...| ....+.++||||+|+|||+|++++++++ +..++.+++.
T Consensus 106 ~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 106 KYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 456777 445332 344444433321 2234579999999999999999999987 6788999988
Q ss_pred hhhhhhhchhHH-HHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009911 306 TLASKWRGESER-MVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVM 384 (522)
Q Consensus 306 ~l~~~~~g~~e~-~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Vi 384 (522)
++...+...... .+..+.... ....+|+|||||.+.++. ..+..|+..++.+...+. .+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~~~~~~~--------~i 235 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKE----------RTQEEFFHTFNALHENGK--------QI 235 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCH----------HHHHHHHHHHHHHHHCCC--------CE
Confidence 776544322211 111222222 235799999999886431 223455555555443321 35
Q ss_pred EEeecCCCC---CccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 385 VLAATNFPW---DIDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 385 vIattn~p~---~ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
||++...|. .+++.+++||. ..+.|+.|+.++|..|++..+....+. ++..+..||..+.| +.++|..+++..
T Consensus 236 iits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l 314 (405)
T TIGR00362 236 VLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRL 314 (405)
T ss_pred EEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 566655564 35688999996 468999999999999999988765443 34447889998885 778888888766
Q ss_pred HHHHHHHHhhcCChHHHhhcccccc--CCCCccHHHHHHHHHhhCCCCCHHHH
Q 009911 459 SLNGMRRKIAGKTRDEIKNMSKDEI--SKDPVAMCDFEEALTKVQRSVSQADI 509 (522)
Q Consensus 459 ~~~a~~r~~~~~~~~~i~~~~~~~~--~~~~lt~~df~~AL~~~~~svs~~~~ 509 (522)
...+.... ..++.+.+...-.+.. ....++.+++.+++.+.- .|+.+++
T Consensus 315 ~~~a~~~~-~~it~~~~~~~L~~~~~~~~~~it~~~I~~~Va~~~-~v~~~~l 365 (405)
T TIGR00362 315 LAYASLTG-KPITLELAKEALKDLLRAKKKEITIENIQEVVAKYY-NIKVSDL 365 (405)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHhccccCCCCCHHHHHHHHHHHc-CCCHHHH
Confidence 55443322 2345444433332221 133588888888888766 6666655
No 90
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=8.2e-15 Score=158.58 Aligned_cols=192 Identities=19% Similarity=0.213 Sum_probs=136.6
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---------- 297 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---------- 297 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++..+.+||+||+|+|||++|+++|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 45678899999999999999999987753 234457899999999999999999998864
Q ss_pred --------------cEEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 298 --------------TFFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 298 --------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
.+++++...- .| -..++.+.+.+.. ....|+||||+|.+. ...+
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~ 136 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSF 136 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHH
Confidence 2333332111 11 1123444443332 234699999998764 3456
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.||+.|+..... +.+|.+|+.+..+.+.+++|| ..+.|..++.++....++..+....+. ++..+..
T Consensus 137 naLLK~LEepp~~----------v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~ 205 (546)
T PRK14957 137 NALLKTLEEPPEY----------VKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEY 205 (546)
T ss_pred HHHHHHHhcCCCC----------ceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8899999865432 566666677888888899999 589999999999888888777654433 3344677
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|+..+.| +.+++.+++..+..
T Consensus 206 Ia~~s~G-dlR~alnlLek~i~ 226 (546)
T PRK14957 206 IAYHAKG-SLRDALSLLDQAIS 226 (546)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 8888765 66777777765543
No 91
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.67 E-value=4.1e-15 Score=153.38 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=131.8
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEE
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG-----TTFFN 301 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-----~~~i~ 301 (522)
-|.++|.+.+|++|+|.+++++.|..++..+ . ..++||+||||||||++|+++|+++. ..++.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~----------~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSP----------N--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCC----------C--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 4788999999999999999999999987532 1 13799999999999999999999984 35678
Q ss_pred eehhhhhhhhh-------------ch-------hHHHHHHHHHHHHhh-----CCcEEEEechhhhhhccCCCCchhhHH
Q 009911 302 VSSATLASKWR-------------GE-------SERMVRCLFDLARAY-----APSTIFIDEIDSLCNARGASGEHESSR 356 (522)
Q Consensus 302 v~~~~l~~~~~-------------g~-------~e~~l~~~f~~a~~~-----~p~VL~IDEiD~l~~~~~~~~~~~~~~ 356 (522)
+++.++..... +. ....++.+....... .+.+|||||+|.+..
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------------ 139 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------------ 139 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH------------
Confidence 88766532210 00 012233333333222 246999999987742
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-Cccc
Q 009911 357 RVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVD 435 (522)
Q Consensus 357 ~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~d 435 (522)
.....|+..++..... +.+|.+++.+..+.+.|++|+ ..+.++.|+.++...+++..+....+. ++..
T Consensus 140 ~~~~~L~~~le~~~~~----------~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~a 208 (337)
T PRK12402 140 DAQQALRRIMEQYSRT----------CRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDG 208 (337)
T ss_pred HHHHHHHHHHHhccCC----------CeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 2234566666654322 334555666777888999998 578999999999999999877654433 3345
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHH
Q 009911 436 IDEVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 436 l~~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
+..|+..+.| +++.+++...
T Consensus 209 l~~l~~~~~g----dlr~l~~~l~ 228 (337)
T PRK12402 209 LELIAYYAGG----DLRKAILTLQ 228 (337)
T ss_pred HHHHHHHcCC----CHHHHHHHHH
Confidence 6778877643 4555554333
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=6.4e-15 Score=160.21 Aligned_cols=193 Identities=20% Similarity=0.206 Sum_probs=139.7
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++..+.+||+||+|+|||++|+++|+.+++.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45678899999999999999999988754 2344678999999999999999999998652
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
++++++.. ...-..++.+.+.+.. ....|+||||+|.|. ....
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~ 136 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAF 136 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHH
Confidence 22232211 0112335566655532 123599999998774 2345
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.||+.|+..... +++|.+|+++..+...+++|| ..+.|..++.++....+...+....+. ++..+..
T Consensus 137 naLLK~LEepp~~----------~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~ 205 (527)
T PRK14969 137 NAMLKTLEEPPEH----------VKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQL 205 (527)
T ss_pred HHHHHHHhCCCCC----------EEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7899999875432 667777788888888899999 589999999999988888777544333 2334677
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
|+..+.| +.+++.+++..+...
T Consensus 206 la~~s~G-slr~al~lldqai~~ 227 (527)
T PRK14969 206 LARAAAG-SMRDALSLLDQAIAY 227 (527)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh
Confidence 8888775 677788888766543
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.65 E-value=2.7e-15 Score=153.58 Aligned_cols=163 Identities=22% Similarity=0.181 Sum_probs=117.1
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.|.++|.+.+|+|++|++++++.|..++.. +..++.+||+||||+|||++|+++|++++..++.+++..
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 578999999999999999999999988742 223346666999999999999999999999999998876
Q ss_pred hhhhhhchhHHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 307 LASKWRGESERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
.. .......+......... ..+.||||||+|.+... .....|...++.... .+.|
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L~~~le~~~~----------~~~~ 134 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHLRSFMEAYSK----------NCSF 134 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHHHHHHHhcCC----------CceE
Confidence 11 11111112221111111 24689999999877211 123444455654332 2577
Q ss_pred EeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHH
Q 009911 386 LAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINL 425 (522)
Q Consensus 386 Iattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l 425 (522)
|++||.+..+.+++++||. .+.++.|+.+++..+++..+
T Consensus 135 Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 135 IITANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred EEEcCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 8888999999999999995 78999999999988776543
No 94
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=1.3e-14 Score=160.10 Aligned_cols=198 Identities=18% Similarity=0.214 Sum_probs=139.8
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE---ee
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN---VS 303 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~---v~ 303 (522)
.+.++|+|.+|+||+|++.+++.|...+.. ++.++.+||+||+|+|||++|+++|+.+.+.-.. -.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 356789999999999999999999998853 2345678999999999999999999998663210 00
Q ss_pred hhhh---hhh----h--hc---hhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhh
Q 009911 304 SATL---ASK----W--RG---ESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 304 ~~~l---~~~----~--~g---~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld 367 (522)
|... .+. + .+ ..-..++.+.+.+.. ....|++|||+|.|.. ...+.||+.|+
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLE 143 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLE 143 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhh
Confidence 1000 000 0 00 112336666665543 2346999999998742 35688999998
Q ss_pred hcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCC
Q 009911 368 GVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGY 446 (522)
Q Consensus 368 ~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gy 446 (522)
.... .+++|.+|+.++.|.+.+++||. .+.|..++.++....++..+....+. .+..+..||..+.|
T Consensus 144 EPP~----------~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G- 211 (725)
T PRK07133 144 EPPK----------HVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG- 211 (725)
T ss_pred cCCC----------ceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 6543 26777777888999999999995 89999999999988888776554433 22336778888876
Q ss_pred cHHHHHHHHHHHH
Q 009911 447 SGDDLTNVCRDAS 459 (522)
Q Consensus 447 s~~dI~~lv~~A~ 459 (522)
+.+++..++..+.
T Consensus 212 slR~AlslLekl~ 224 (725)
T PRK07133 212 SLRDALSIAEQVS 224 (725)
T ss_pred CHHHHHHHHHHHH
Confidence 5666777666544
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=5.4e-15 Score=154.91 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=128.1
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE----------------
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTF---------------- 299 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~---------------- 299 (522)
.|++|+|++.+++.|..++..+......+ ....++++||+||+|+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 48999999999999999997654321111 122457899999999999999999999875531
Q ss_pred -------EEeehhhhhhhhhchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 300 -------FNVSSATLASKWRGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 300 -------i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
+.+.+.. ... .-..++.+++.+... ...|+||||+|.|.. ...+.||+.|+.
T Consensus 81 ~~~hpD~~~i~~~~---~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------~aanaLLk~LEe 143 (394)
T PRK07940 81 AGTHPDVRVVAPEG---LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------RAANALLKAVEE 143 (394)
T ss_pred cCCCCCEEEecccc---ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------HHHHHHHHHhhc
Confidence 1121110 001 122366777666532 235999999998853 235779998886
Q ss_pred cCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcH
Q 009911 369 VNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSG 448 (522)
Q Consensus 369 ~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~ 448 (522)
.... +++|.+|++++.+.+++++|| ..++|+.|+.++...++.... .+. ......++..+.|..+
T Consensus 144 p~~~----------~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~ 208 (394)
T PRK07940 144 PPPR----------TVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIG 208 (394)
T ss_pred CCCC----------CeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHH
Confidence 4332 455555566899999999999 589999999998877776322 222 3346678899999877
Q ss_pred HHHHHHH
Q 009911 449 DDLTNVC 455 (522)
Q Consensus 449 ~dI~~lv 455 (522)
..+..+.
T Consensus 209 ~A~~l~~ 215 (394)
T PRK07940 209 RARRLAT 215 (394)
T ss_pred HHHHHhc
Confidence 6655443
No 96
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=3.2e-14 Score=152.07 Aligned_cols=190 Identities=19% Similarity=0.201 Sum_probs=132.8
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.++..|..++.. ++.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 45678899999999999999999988753 2344689999999999999999999988542
Q ss_pred ----------------EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 299 ----------------FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 299 ----------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
++.+++... .| -..++.+.+... .....||||||+|.+.. ..
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------~~ 137 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------EA 137 (451)
T ss_pred cccHHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------------HH
Confidence 222322110 11 112333222222 23457999999998742 24
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHH
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDID 437 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~ 437 (522)
.+.|++.|+.... .+++|.+|+.+..+.+++++||. .+.|..++.++....++..+....+. ++..+.
T Consensus 138 ~n~LLk~lEep~~----------~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~ 206 (451)
T PRK06305 138 FNSLLKTLEEPPQ----------HVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALL 206 (451)
T ss_pred HHHHHHHhhcCCC----------CceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5788888886433 25666777888999999999995 79999999999888888776554332 334577
Q ss_pred HHHHHcCCCcHHHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~A 458 (522)
.|+..+.| +.+++.+++...
T Consensus 207 ~L~~~s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 207 PIARAAQG-SLRDAESLYDYV 226 (451)
T ss_pred HHHHHcCC-CHHHHHHHHHHH
Confidence 78888775 555555555543
No 97
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.64 E-value=1.1e-14 Score=153.18 Aligned_cols=226 Identities=22% Similarity=0.269 Sum_probs=145.6
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhh----ccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh-hhhhch
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQ----GIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA-SKWRGE 314 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~----~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~-~~~~g~ 314 (522)
|+|++++++.|..++..+...-.... ....+..++||+||||||||++|+++|..++.+|+.++++.+. ..|.|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999887754322211100 1123456899999999999999999999999999999998875 356666
Q ss_pred h-HHHHHHHHHHH----HhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcC----CCCCCCCCCcceE
Q 009911 315 S-ERMVRCLFDLA----RAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVN----NTGTNEDGSRKIV 383 (522)
Q Consensus 315 ~-e~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~----~~~~~~~~~~~~V 383 (522)
. +..+..++..+ ....++||||||||.+....... ..+.....++..||..|++.. ..++ .......+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg-~~~~~~~~ 231 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG-RKHPQQEF 231 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCC-cCcCCCCe
Confidence 4 44445544322 23467899999999998663221 112233468899999998642 1111 11111223
Q ss_pred EEEeecCC--------CC--------------------------------------------CccHHHHhhcccccccCC
Q 009911 384 MVLAATNF--------PW--------------------------------------------DIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 384 ivIattn~--------p~--------------------------------------------~ld~aL~rRf~~~i~i~~ 411 (522)
++|.|+|- .. -+.|.|+.|++..+.|..
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~ 311 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEE 311 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCC
Confidence 44444332 10 034677778988899999
Q ss_pred CCHHHHHHHHHH----HHcc-------CCCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 412 PNFESRKELIKI----NLKT-------VEVS---KDVDIDEVARR--TDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 412 Pd~~~R~~Ilk~----~l~~-------~~l~---~~~dl~~LA~~--t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
.+.++...|+.. .++. ..+. ++.-+..||+. ..+|-.+.|+.+++......+.+.
T Consensus 312 L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 312 LDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 999999998873 2221 1111 12225667775 445667888888887777666554
No 98
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.2e-14 Score=157.67 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=138.9
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++++++.|..++.. ++.++.+||+||+|+|||++|+++|+.+++.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 35678899999999999999999998753 2445678999999999999999999998642
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
++++++... ..-..++.+.+.+... ...|+||||+|.|. ....
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~ 136 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAF 136 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHH
Confidence 333332210 1122355555544321 23599999998774 2346
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|++.|+..... ++||.+|+.++.|.+.|++||. .+.|..++.++....+...+....+. ++..+..
T Consensus 137 naLLk~LEepp~~----------~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~ 205 (576)
T PRK14965 137 NALLKTLEEPPPH----------VKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALAL 205 (576)
T ss_pred HHHHHHHHcCCCC----------eEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8899999875432 6777788889999999999994 89999999988888888777654432 3345778
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~ 459 (522)
|+..++| +.+++.+++..+.
T Consensus 206 la~~a~G-~lr~al~~Ldqli 225 (576)
T PRK14965 206 VARKGDG-SMRDSLSTLDQVL 225 (576)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 8888886 5666666666544
No 99
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.4e-15 Score=162.60 Aligned_cols=172 Identities=24% Similarity=0.303 Sum_probs=124.9
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh--------
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS-------- 309 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~-------- 309 (522)
+|-.|++++|+.+.|++..-.. ......+-++|+||||+|||++++.||+.+|..||.++..-+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 3678999999999999865221 11122346889999999999999999999999999998665432
Q ss_pred -hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-----CCCCCCcceE
Q 009911 310 -KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-----TNEDGSRKIV 383 (522)
Q Consensus 310 -~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-----~~~~~~~~~V 383 (522)
.|.|.....+-+.+.......| +++|||||++...- .++ . -++||..||--.+.+ -+...+...|
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~--qGD---P---asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH--QGD---P---ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC--CCC---h---HHHHHHhcChhhccchhhhccccccchhhe
Confidence 2555544444455566666565 88999999997322 111 1 245666665332222 1122345669
Q ss_pred EEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHH
Q 009911 384 MVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINL 425 (522)
Q Consensus 384 ivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l 425 (522)
+||||+|..+.|+++|+.|++ .|.++=+..++...|-+.+|
T Consensus 556 LFicTAN~idtIP~pLlDRME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhh-eeeccCccHHHHHHHHHHhh
Confidence 999999999999999999995 89999999999999988776
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.4e-14 Score=155.90 Aligned_cols=212 Identities=18% Similarity=0.162 Sum_probs=146.6
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee----
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS---- 303 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~---- 303 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++.++.+||+||+|+|||++|+++|+.+++.....+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 45678899999999999999999997753 345578999999999999999999999875421111
Q ss_pred ---------hhhhhhhh----------hchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHHH
Q 009911 304 ---------SATLASKW----------RGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVKS 360 (522)
Q Consensus 304 ---------~~~l~~~~----------~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~ 360 (522)
|..+.... ....-..++.+++.+... ...||||||+|.|. ....+
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~n 150 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFN 150 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHH
Confidence 11111000 001122356666555432 24699999998874 23468
Q ss_pred HHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHH
Q 009911 361 ELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEV 439 (522)
Q Consensus 361 ~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~L 439 (522)
.|++.|+..... ++||.+|+.++.+.+.+++||. .+.|..++.++....++..+....+. .+..+..|
T Consensus 151 aLLKtLEePp~~----------~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lI 219 (598)
T PRK09111 151 ALLKTLEEPPPH----------VKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALI 219 (598)
T ss_pred HHHHHHHhCCCC----------eEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 899999876543 5566667778888899999995 79999999999999888877654433 23446777
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhc
Q 009911 440 ARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNM 478 (522)
Q Consensus 440 A~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~ 478 (522)
+..+.| +.+++.+++..+.... ...++.+.+..+
T Consensus 220 a~~a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~l 253 (598)
T PRK09111 220 ARAAEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDM 253 (598)
T ss_pred HHHcCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHH
Confidence 888876 6777777776654332 123555555544
No 101
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=2.8e-14 Score=156.22 Aligned_cols=192 Identities=22% Similarity=0.263 Sum_probs=140.8
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---------- 297 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---------- 297 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++..+.+||+||+|||||++|+.+|+.+++
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34678899999999999999999998753 234567999999999999999999999854
Q ss_pred --------------cEEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 298 --------------TFFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 298 --------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
.++++++.. ...-..++.+.+.+.. ....|+||||+|.|. ....
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~ 136 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAF 136 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHH
Confidence 233443321 1122335666655543 224599999998774 2346
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|++.++..... +++|.+|+.++.+.+.+++||. .+.|..|+..+....++..+....+. ++..+..
T Consensus 137 naLLKtLEepp~~----------~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ 205 (559)
T PRK05563 137 NALLKTLEEPPAH----------VIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRL 205 (559)
T ss_pred HHHHHHhcCCCCC----------eEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7888888865432 6666677788999999999995 78899999999999888877654433 2344677
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|+..++| +.+++.+++..+..
T Consensus 206 ia~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 206 IARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 8888876 77777777776544
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.63 E-value=2.3e-14 Score=149.05 Aligned_cols=192 Identities=22% Similarity=0.266 Sum_probs=136.8
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.+++++..|+|++|++.+++.|.+.+.. ++.++.+||+||||+|||++|+++|+.+.+.
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 46778899999999999999999987753 2344679999999999999999999997532
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
++.++... ......++.+++.+... ...||+|||+|.+.. ...
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~~ 134 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SAF 134 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HHH
Confidence 23332221 11122355666655432 235999999987742 245
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|++.++.... .+++|.+|+++..+.+++++||. .+.++.|+.++...+++..+....+. ++..+..
T Consensus 135 ~~Ll~~le~~~~----------~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~ 203 (355)
T TIGR02397 135 NALLKTLEEPPE----------HVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALEL 203 (355)
T ss_pred HHHHHHHhCCcc----------ceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 778888875432 26667777888888899999994 78999999999999999877655432 2344667
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|+..+.| +.+.+.+.+..+..
T Consensus 204 l~~~~~g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 204 IARAADG-SLRDALSLLDQLIS 224 (355)
T ss_pred HHHHcCC-ChHHHHHHHHHHHh
Confidence 7887775 56666666655543
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=5.1e-14 Score=150.25 Aligned_cols=245 Identities=18% Similarity=0.236 Sum_probs=149.7
Q ss_pred CCCCCccccc-CcHH--HHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEee
Q 009911 232 SPGVRWDDVA-GLTE--AKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVS 303 (522)
Q Consensus 232 ~~~~~~~di~-G~~~--vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~ 303 (522)
.+..+|++++ |... +...+.++...| . ..++++||||+|+|||+|++++++++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~-~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP----------G-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc----------C-CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4567788876 5332 233333332211 1 13579999999999999999999986 46788889
Q ss_pred hhhhhhhhhchhH-HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcce
Q 009911 304 SATLASKWRGESE-RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI 382 (522)
Q Consensus 304 ~~~l~~~~~g~~e-~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~ 382 (522)
+.++...+..... ..+.. |.......+.+|+|||++.+.+.. ....+|+..++.+...+.
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~----------~~q~elf~~~n~l~~~~k-------- 228 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT----------GVQTELFHTFNELHDSGK-------- 228 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH----------HHHHHHHHHHHHHHHcCC--------
Confidence 8887655432211 11122 222222357899999999875431 122445555554443321
Q ss_pred EEEEeecCCCCC---ccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 383 VMVLAATNFPWD---IDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 383 VivIattn~p~~---ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
.+||++...|.. +.+.+++||. ..+.+..||.+.|..|++..+....+. ++..+..||....| +.+.|..++.
T Consensus 229 ~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~ 307 (440)
T PRK14088 229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAII 307 (440)
T ss_pred eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHH
Confidence 456666566654 4578888984 467889999999999999887643332 23347889998875 6777887777
Q ss_pred HHHHHHHHHHhhcCChHHHhhcccccc----CCCCccHHHHHHHHHhhCCCCCHHHH
Q 009911 457 DASLNGMRRKIAGKTRDEIKNMSKDEI----SKDPVAMCDFEEALTKVQRSVSQADI 509 (522)
Q Consensus 457 ~A~~~a~~r~~~~~~~~~i~~~~~~~~----~~~~lt~~df~~AL~~~~~svs~~~~ 509 (522)
.....+.... ..++.+.+.++-.+.+ ....++.+++.+++.+.- .++.+++
T Consensus 308 ~l~~~~~~~~-~~it~~~a~~~L~~~~~~~~~~~~i~~~~I~~~V~~~~-~i~~~~l 362 (440)
T PRK14088 308 KLLVYKETTG-EEVDLKEAILLLKDFIKPNRVKAMDPIDELIEIVAKVT-GVSREEI 362 (440)
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHc-CCcHHHH
Confidence 5544443322 2244444333222211 122478888888877776 6666655
No 104
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=4.7e-14 Score=153.08 Aligned_cols=215 Identities=17% Similarity=0.232 Sum_probs=141.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhcc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNAR 346 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~ 346 (522)
+.++|||++|+|||+|+.+||+++ +..++++++..+...+...........|.. +.....+|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCCH
Confidence 469999999999999999999987 568899999888766544322211122332 23346899999999886432
Q ss_pred CCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC-C---CCccHHHHhhc--ccccccCCCCHHHHHHH
Q 009911 347 GASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF-P---WDIDEALRRRL--EKRIYIPLPNFESRKEL 420 (522)
Q Consensus 347 ~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~-p---~~ld~aL~rRf--~~~i~i~~Pd~~~R~~I 420 (522)
.....|+..++.+...+. .+|| |++. | ..+++.|++|| ...+.|..||.+.|.+|
T Consensus 394 ----------~tqeeLF~l~N~l~e~gk--------~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 394 ----------STQEEFFHTFNTLHNANK--------QIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred ----------HHHHHHHHHHHHHHhcCC--------CEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 122445555555543321 2444 5554 3 35678999999 45668899999999999
Q ss_pred HHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhcccccc---CCCCccHHHHHHH
Q 009911 421 IKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEI---SKDPVAMCDFEEA 496 (522)
Q Consensus 421 lk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~---~~~~lt~~df~~A 496 (522)
|+..+....+. ++.-+..|+.+..+ +.+.|..++......+.... ..++.+.+..+-.+.+ ....|+.+++.++
T Consensus 455 L~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~~~~~~~it~d~I~~~ 532 (617)
T PRK14086 455 LRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIPEDSAPEITAAAIMAA 532 (617)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhccccCCcCCHHHHHHH
Confidence 99888765544 23346788888874 67788887776544443322 2344444433333222 1346888888888
Q ss_pred HHhhCCCCCHHHH
Q 009911 497 LTKVQRSVSQADI 509 (522)
Q Consensus 497 L~~~~~svs~~~~ 509 (522)
+.+.- .|+.+++
T Consensus 533 Va~~f-~v~~~dl 544 (617)
T PRK14086 533 TADYF-GLTVEDL 544 (617)
T ss_pred HHHHh-CCCHHHH
Confidence 88877 6666666
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=5.6e-14 Score=148.39 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=131.1
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 35678899999999999999999887753 2445679999999999999999999999762
Q ss_pred -----------------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCc
Q 009911 299 -----------------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGE 351 (522)
Q Consensus 299 -----------------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~ 351 (522)
++.++... ...-..++.+.+.+.. ....||||||+|.+..
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------- 141 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------- 141 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-------
Confidence 11111110 0012234444433321 1235999999988742
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-
Q 009911 352 HESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV- 430 (522)
Q Consensus 352 ~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l- 430 (522)
...+.|++.++..... +++|.+|+.+..+.+++++|+. .+.|..++.++....++..+.....
T Consensus 142 -----~~~~~LLk~LEep~~~----------t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 142 -----AAFNAFLKTLEEPPPH----------AIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred -----HHHHHHHHHHhcCCCC----------eEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 2456788888755432 4555555667888899999995 8999999998888888877754432
Q ss_pred CCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 009911 431 SKDVDIDEVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 431 ~~~~dl~~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
-++..+..|+..+.| +.+.+.+.++.+.
T Consensus 206 i~~~al~~l~~~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 206 VDADALQLIGRKAQG-SMRDAQSILDQVI 233 (397)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 233446778888876 5555666665443
No 106
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6.9e-14 Score=150.49 Aligned_cols=193 Identities=22% Similarity=0.259 Sum_probs=136.0
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT-------- 298 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~-------- 298 (522)
.+.++|.+.+|+|++|++.+.+.|...+.. ++..+.+||+||+|+|||++|+.+|+.+++.
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 356778899999999999999999988853 2344578999999999999999999998641
Q ss_pred ----------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 299 ----------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 299 ----------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
+++++++. ...-..++.+.+.+.. ....|++|||+|.|. ...
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a 135 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEA 135 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHH
Confidence 22222111 0111224445444432 234699999998774 234
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHH
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDID 437 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~ 437 (522)
.+.|+..++..... +++|.+|+.++.+.+++++||. .+.|+.++.++...+++..+....+. ++..+.
T Consensus 136 ~naLLk~LEepp~~----------~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~ 204 (486)
T PRK14953 136 FNALLKTLEEPPPR----------TIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALD 204 (486)
T ss_pred HHHHHHHHhcCCCC----------eEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 57788888765322 4555556778888899999995 79999999999999999887765443 233467
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
.|+..+.| +.+++.++++.+..
T Consensus 205 ~La~~s~G-~lr~al~~Ldkl~~ 226 (486)
T PRK14953 205 LLAQASEG-GMRDAASLLDQAST 226 (486)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHH
Confidence 78888775 56777777766643
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.61 E-value=1.5e-13 Score=140.48 Aligned_cols=192 Identities=20% Similarity=0.255 Sum_probs=131.0
Q ss_pred hhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEE
Q 009911 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG-----TTFF 300 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-----~~~i 300 (522)
..|.++|.|.+|+|++|.+++++.|..++... .. .++||+||+|||||++++++++++. ..++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~----------~~--~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK----------NM--PHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCC----------CC--CeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 45889999999999999999999999887431 11 2699999999999999999999973 3455
Q ss_pred EeehhhhhhhhhchhHHHHH-HHHHHHHh-----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCC
Q 009911 301 NVSSATLASKWRGESERMVR-CLFDLARA-----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGT 374 (522)
Q Consensus 301 ~v~~~~l~~~~~g~~e~~l~-~~f~~a~~-----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~ 374 (522)
.++++.... . ..+. .+...+.. ..+.+|+|||+|.+... ....|+..++.....
T Consensus 73 ~~~~~~~~~-----~-~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~------------~~~~L~~~le~~~~~-- 132 (319)
T PRK00440 73 ELNASDERG-----I-DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD------------AQQALRRTMEMYSQN-- 132 (319)
T ss_pred Eeccccccc-----h-HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH------------HHHHHHHHHhcCCCC--
Confidence 555433211 1 1121 22222221 22459999999887421 235566666643322
Q ss_pred CCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHH
Q 009911 375 NEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTN 453 (522)
Q Consensus 375 ~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~ 453 (522)
+.+|.++|.+..+.+++.+|+. .+.++.++.++...+++..+....+. ++..+..|+..+.| +.+.+.+
T Consensus 133 --------~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~ 202 (319)
T PRK00440 133 --------TRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAIN 202 (319)
T ss_pred --------CeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3455667778888889999995 68999999999999999887654432 33457888888776 4444555
Q ss_pred HHHHHH
Q 009911 454 VCRDAS 459 (522)
Q Consensus 454 lv~~A~ 459 (522)
.++.+.
T Consensus 203 ~l~~~~ 208 (319)
T PRK00440 203 ALQAAA 208 (319)
T ss_pred HHHHHH
Confidence 554433
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.60 E-value=6.8e-14 Score=156.42 Aligned_cols=187 Identities=21% Similarity=0.320 Sum_probs=125.9
Q ss_pred hhccCCCCCcccccCcHHHHH---HHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 228 VLETSPGVRWDDVAGLTEAKR---LLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~---~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
+.+++.+.+|+|++|++.+.. .|..++.. . ...++||+||||||||++|+++|+.++.+|+.+++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~----------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA----------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 445577889999999999874 45555432 1 12489999999999999999999999999999887
Q ss_pred hhhhhhhhchhHHHHHHHHHHHH-----hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 009911 305 ATLASKWRGESERMVRCLFDLAR-----AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGS 379 (522)
Q Consensus 305 ~~l~~~~~g~~e~~l~~~f~~a~-----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~ 379 (522)
.... . ..++.++..+. .....+|||||||.+.. ..+..|+..++.
T Consensus 86 ~~~~-----i--~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------~qQdaLL~~lE~----------- 135 (725)
T PRK13341 86 VLAG-----V--KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------AQQDALLPWVEN----------- 135 (725)
T ss_pred hhhh-----h--HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------HHHHHHHHHhcC-----------
Confidence 6321 1 11222333221 12356999999988742 234566665542
Q ss_pred cceEEEEee-cCCC-CCccHHHHhhcccccccCCCCHHHHHHHHHHHHcc-------CCCC-CcccHHHHHHHcCCCcHH
Q 009911 380 RKIVMVLAA-TNFP-WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKT-------VEVS-KDVDIDEVARRTDGYSGD 449 (522)
Q Consensus 380 ~~~VivIat-tn~p-~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~-------~~l~-~~~dl~~LA~~t~Gys~~ 449 (522)
..+++|++ |.++ ..+++++++|+ ..+.|+.++.+++..+++..+.. ..+. ++..+..|+....| ..+
T Consensus 136 -g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R 212 (725)
T PRK13341 136 -GTITLIGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DAR 212 (725)
T ss_pred -ceEEEEEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHH
Confidence 11555554 4444 57899999998 57999999999999999988762 1111 23336778877754 455
Q ss_pred HHHHHHHHHH
Q 009911 450 DLTNVCRDAS 459 (522)
Q Consensus 450 dI~~lv~~A~ 459 (522)
.+.++++.+.
T Consensus 213 ~lln~Le~a~ 222 (725)
T PRK13341 213 SLLNALELAV 222 (725)
T ss_pred HHHHHHHHHH
Confidence 5556665544
No 109
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=7.9e-14 Score=153.97 Aligned_cols=190 Identities=17% Similarity=0.210 Sum_probs=133.3
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTF-------- 299 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~-------- 299 (522)
+.++|.+.+|+||+|++.+++.|..++.. ++..+.+||+||+|+|||++|+++|+.+++..
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45789999999999999999999887753 23345789999999999999999999986422
Q ss_pred -----------------EEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 300 -----------------FNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 300 -----------------i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
++++... ...-..++.+.+.+.. ....||||||+|.|.. ..
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a 136 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST------------AA 136 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HH
Confidence 2222110 0111224444433332 2246999999987742 34
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHH
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDID 437 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~ 437 (522)
++.|++.|+..... ++||.+++..+.+.+.+++||. .+.|..++..+...+++..+....+. ++..+.
T Consensus 137 ~naLLk~LEepp~~----------tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~ 205 (585)
T PRK14950 137 FNALLKTLEEPPPH----------AIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALE 205 (585)
T ss_pred HHHHHHHHhcCCCC----------eEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 57788888865432 5666667777888899999995 78999999999888888776554432 233467
Q ss_pred HHHHHcCCCcHHHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~A 458 (522)
.|+..+.| +.+++.++++..
T Consensus 206 ~La~~s~G-dlr~al~~LekL 225 (585)
T PRK14950 206 AIARAATG-SMRDAENLLQQL 225 (585)
T ss_pred HHHHHcCC-CHHHHHHHHHHH
Confidence 78888876 666777766643
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=9e-14 Score=149.87 Aligned_cols=194 Identities=20% Similarity=0.192 Sum_probs=139.3
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---------- 297 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---------- 297 (522)
+.++|.+.+|+||+|++.+++.|...+.. ++.++.+||+||+|+|||++|+++|+.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 45688999999999999999999988753 234467799999999999999999999842
Q ss_pred --------------cEEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 298 --------------TFFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 298 --------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
.++++++..- . .-..++.+...... ....|++|||+|.|. ...+
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~----~--gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~ 134 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASN----R--GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAF 134 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccc----c--CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHH
Confidence 2333333210 0 11234444443321 123599999998774 3456
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.||+.|+..... +.+|.+|+.+..+.+++++||. .++|..++.++....++..+....+. ++..+..
T Consensus 135 NALLK~LEEpp~~----------t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~ 203 (535)
T PRK08451 135 NALLKTLEEPPSY----------VKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEI 203 (535)
T ss_pred HHHHHHHhhcCCc----------eEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8899999875432 5666667778999999999994 88999999998888888777654332 3345778
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
|+..+.| +.+++.+++..+...+
T Consensus 204 Ia~~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 204 LARSGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHcCC-cHHHHHHHHHHHHHhc
Confidence 8888876 7788888887766543
No 111
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=8.5e-14 Score=153.66 Aligned_cols=189 Identities=20% Similarity=0.221 Sum_probs=134.1
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+..|++++|++.+++.|..++.. ++..+++||+||+|+|||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 45678899999999999999999998764 2234589999999999999999999998763
Q ss_pred -----------------EEEeehhhhhhhhhchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHH
Q 009911 299 -----------------FFNVSSATLASKWRGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRR 357 (522)
Q Consensus 299 -----------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~ 357 (522)
+++++.. ....-..++.+++.+... ...||||||+|.|. ..
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~ 136 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TA 136 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HH
Confidence 2222211 112234566666655432 24699999998874 23
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccH
Q 009911 358 VKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDI 436 (522)
Q Consensus 358 ~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl 436 (522)
..+.||+.|+..... +++|++|+++..+.+.|++||. .+.|+.++.++....+...+....+. ....+
T Consensus 137 a~naLLK~LEePp~~----------tvfIL~t~~~~~llpTIrSRc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al 205 (620)
T PRK14948 137 AFNALLKTLEEPPPR----------VVFVLATTDPQRVLPTIISRCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEAL 205 (620)
T ss_pred HHHHHHHHHhcCCcC----------eEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 568899999864432 6677777888889999999994 78888888888777777666543322 22346
Q ss_pred HHHHHHcCCCcHHHHHHHHHH
Q 009911 437 DEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 437 ~~LA~~t~Gys~~dI~~lv~~ 457 (522)
..|+..+.| +.+++.++++.
T Consensus 206 ~~La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 206 TLVAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred HHHHHHcCC-CHHHHHHHHHH
Confidence 778888876 34555555553
No 112
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.60 E-value=5.4e-14 Score=135.90 Aligned_cols=193 Identities=24% Similarity=0.311 Sum_probs=135.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSAT 306 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~ 306 (522)
....++.+++++|++..|+.|.+-.... .. +.|.++|||||++|||||++++++..++ |..+|+|....
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~F------l~--G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQF------LQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHH------Hc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 3455789999999999999998866432 22 3467899999999999999999999877 78999998877
Q ss_pred hhhhhhchhHHHHHHHHHHHHhh-CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAY-APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
+.. +..+++..+.. .+-|||||++- + ..... -...|-..|+|--.. .+.+|+|
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs--F-----e~~d~----~yk~LKs~LeGgle~------~P~Nvli 144 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLS--F-----EEGDT----EYKALKSVLEGGLEA------RPDNVLI 144 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCC--C-----CCCcH----HHHHHHHHhcCcccc------CCCcEEE
Confidence 643 45555555532 35799999973 1 11111 224444555654322 4567999
Q ss_pred EeecCCCCCccH-----------------------HHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCc-ccHHH---
Q 009911 386 LAATNFPWDIDE-----------------------ALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKD-VDIDE--- 438 (522)
Q Consensus 386 Iattn~p~~ld~-----------------------aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~-~dl~~--- 438 (522)
.+|+|+...+.+ +|-.||...|.|..|+.++..+|++.++....+.-+ .++..
T Consensus 145 yATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al 224 (249)
T PF05673_consen 145 YATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEAL 224 (249)
T ss_pred EEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999997543321 455699999999999999999999999976655433 22322
Q ss_pred -HHHHcCCCcHHHHHHHHH
Q 009911 439 -VARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 439 -LA~~t~Gys~~dI~~lv~ 456 (522)
-|..-.|.||+--.+.++
T Consensus 225 ~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 225 QWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 333445677776666654
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.2e-13 Score=151.92 Aligned_cols=194 Identities=15% Similarity=0.209 Sum_probs=131.1
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE--------
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF-------- 300 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i-------- 300 (522)
.++|++.+|+||+|++.+++.|..++.. ++.++++||+||+|||||++|+++|+.+.+.--
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 4678899999999999999999987743 244468999999999999999999999977310
Q ss_pred ---E-e----ehhhhhh-------hhhch---hHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 301 ---N-V----SSATLAS-------KWRGE---SERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 301 ---~-v----~~~~l~~-------~~~g~---~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
. + +|..+.. .+.+. .-..++.+.+.+. .....|+||||+|.|.. ..
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------~a 143 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------AA 143 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------HH
Confidence 0 0 0100000 00110 1223444443332 12346999999988742 23
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-CCcccHH
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-SKDVDID 437 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-~~~~dl~ 437 (522)
.+.|++.|+..... +++|.+|+.+..+.+.|++|+ ..+.|..++.++....++..+....+ .++..+.
T Consensus 144 ~naLLK~LEePp~~----------tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 144 FNAFLKTLEEPPPH----------AIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred HHHHHHHHhCCCCC----------eEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 57899999875533 455555667789999999999 48999999999888888776654332 2344577
Q ss_pred HHHHHcCCCcHHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~ 457 (522)
.|+..+.| +.+++.+.++.
T Consensus 213 ~La~~s~G-dlr~al~eLeK 231 (620)
T PRK14954 213 LIARKAQG-SMRDAQSILDQ 231 (620)
T ss_pred HHHHHhCC-CHHHHHHHHHH
Confidence 78888876 45555555543
No 114
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.60 E-value=1.4e-13 Score=143.63 Aligned_cols=259 Identities=20% Similarity=0.184 Sum_probs=156.5
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEeehhhh
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG---------TTFFNVSSATL 307 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg---------~~~i~v~~~~l 307 (522)
.++++|.++..+.|..++...+ . ...+.+++|+||||||||++++++++.+. ..++.++|...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~------~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL------R--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH------c--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 3579999999988888774311 1 12235899999999999999999998763 56788887543
Q ss_pred hh----------hhh--c--------hhHHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHh
Q 009911 308 AS----------KWR--G--------ESERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 308 ~~----------~~~--g--------~~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~l 366 (522)
.+ ... + .....+..++..... ..+.||+|||+|.+.... ..++..|+...
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~~ 156 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRAR 156 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhccc
Confidence 21 110 1 012234445544432 346789999999997221 11233333221
Q ss_pred hhcCCCCCCCCCCcceEEEEeecCCCC---CccHHHHhhcc-cccccCCCCHHHHHHHHHHHHccC---CCCCcccHHH-
Q 009911 367 DGVNNTGTNEDGSRKIVMVLAATNFPW---DIDEALRRRLE-KRIYIPLPNFESRKELIKINLKTV---EVSKDVDIDE- 438 (522)
Q Consensus 367 d~~~~~~~~~~~~~~~VivIattn~p~---~ld~aL~rRf~-~~i~i~~Pd~~~R~~Ilk~~l~~~---~l~~~~dl~~- 438 (522)
+... .....+.+|+++|.++ .+++.+.+||. ..+.|+.++.++..+|++..+... ....+..+..
T Consensus 157 ~~~~-------~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 229 (365)
T TIGR02928 157 SNGD-------LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLC 229 (365)
T ss_pred cccC-------CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHH
Confidence 1000 0123488888888875 57788888885 578999999999999999887521 1111222233
Q ss_pred --HHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhcc--------ccccCCCCccHHHHHHHHHhh-----CCC
Q 009911 439 --VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMS--------KDEISKDPVAMCDFEEALTKV-----QRS 503 (522)
Q Consensus 439 --LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~--------~~~~~~~~lt~~df~~AL~~~-----~~s 503 (522)
++..+.|. .+.+.++|+.|...+..+....++.+.+.... .+.+...+.....+..|+... ...
T Consensus 230 ~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~ 308 (365)
T TIGR02928 230 AALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLAANDEDPF 308 (365)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 44444553 45566688888887776655455555443221 122334455555666666522 223
Q ss_pred CCHHHHHHHHHHHHHhc
Q 009911 504 VSQADIEKHEKWFQEFG 520 (522)
Q Consensus 504 vs~~~~~~~~~w~~~fg 520 (522)
.+.+-++.|.++...+|
T Consensus 309 ~~~~~~~~y~~~~~~~~ 325 (365)
T TIGR02928 309 RTGEVYEVYKEVCEDIG 325 (365)
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 35566677777777665
No 115
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.59 E-value=1.9e-14 Score=162.68 Aligned_cols=235 Identities=19% Similarity=0.197 Sum_probs=150.2
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh---------
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS--------- 309 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~--------- 309 (522)
|+.|++.+|+.+.+++...... .......++|+||||+|||++++.+|..++.+|+.++......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 5899999999999988743211 1112347999999999999999999999999999888654321
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC-----CCCCCCCCcceEE
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN-----TGTNEDGSRKIVM 384 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~-----~~~~~~~~~~~Vi 384 (522)
.|.|.....+...+..+.... .||||||||++..... ....+.|+..+|.-.+ ..-....+...|+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~--------g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR--------GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC--------CCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 233333333333444433333 4899999999864321 1234677777763111 1001112335589
Q ss_pred EEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHcc-----CCCC-C--ccc---HHHHHH-HcCCCcHHHHH
Q 009911 385 VLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKT-----VEVS-K--DVD---IDEVAR-RTDGYSGDDLT 452 (522)
Q Consensus 385 vIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~-----~~l~-~--~~d---l~~LA~-~t~Gys~~dI~ 452 (522)
+|+|+|.. .++++|++||. .|.+..++.++..+|.+.++.. ..+. . .++ +..|++ .+..|-.+.|+
T Consensus 468 ~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~Le 545 (784)
T PRK10787 468 FVATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLE 545 (784)
T ss_pred EEEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHH
Confidence 99999887 59999999995 7899999999999999887731 1111 1 111 334443 22234456677
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 453 NVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 453 ~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
.++...+...+.+.+. ........|+.+++.+.|....
T Consensus 546 R~I~~i~r~~l~~~~~-----------~~~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 546 REISKLCRKAVKQLLL-----------DKSLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred HHHHHHHHHHHHHHHh-----------cCCCceeeecHHHHHHHhCCCc
Confidence 7776655555444321 1112345788999988887543
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.9e-13 Score=143.00 Aligned_cols=191 Identities=20% Similarity=0.226 Sum_probs=134.4
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.++|.+.+|+||+|++.+++.|...+.. +..++++|||||||+|||++|+++|+.+.+.
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45788999999999999999999988853 2344689999999999999999999998652
Q ss_pred ---EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC
Q 009911 299 ---FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 299 ---~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
+++++... ......++.+++.+.. ....||||||+|.+.. ..++.|++.++....
T Consensus 76 ~~~~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~~~ 137 (367)
T PRK14970 76 SFNIFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEPPA 137 (367)
T ss_pred CcceEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCCCC
Confidence 12222111 1112345566665542 2346999999987742 235677777765322
Q ss_pred CCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHH
Q 009911 372 TGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDD 450 (522)
Q Consensus 372 ~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~d 450 (522)
.+++|.+++.+..+.+++.+||. .+.++.|+.++...++...+....+. ++..+..|+..+.| +.+.
T Consensus 138 ----------~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~ 205 (367)
T PRK14970 138 ----------HAIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRD 205 (367)
T ss_pred ----------ceEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHH
Confidence 14566667778899999999995 78999999999988888777654432 33456778887765 5566
Q ss_pred HHHHHHHHH
Q 009911 451 LTNVCRDAS 459 (522)
Q Consensus 451 I~~lv~~A~ 459 (522)
+.+.++...
T Consensus 206 ~~~~lekl~ 214 (367)
T PRK14970 206 ALSIFDRVV 214 (367)
T ss_pred HHHHHHHHH
Confidence 666665443
No 117
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=2.8e-13 Score=144.40 Aligned_cols=201 Identities=18% Similarity=0.288 Sum_probs=123.6
Q ss_pred CCCCCccccc-CcHH--HHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 232 SPGVRWDDVA-GLTE--AKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 232 ~~~~~~~di~-G~~~--vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
.+..+|++++ |... +...+.++...+- ...+.+.++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~------~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE------QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc------cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 3456788876 5322 2334444332110 0111234689999999999999999999986 6888999887
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 306 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 306 ~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
.+...+.......-...|... .....+|+||||+.+.++. ..+.+|+..++.+...+. .+|
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~----------~~qeelf~l~N~l~~~~k--------~II 239 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKG----------ATQEEFFHTFNSLHTEGK--------LIV 239 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCCh----------hhHHHHHHHHHHHHHCCC--------cEE
Confidence 766543322211011123222 2346799999999875432 122344444443332211 455
Q ss_pred EeecCCCC---CccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 386 LAATNFPW---DIDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 386 Iattn~p~---~ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
++++..|. .+++.|++||. ..+.++.|+.++|..|++..+....+. ++..++.||....+ +.+.|..++...
T Consensus 240 lts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 240 ISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred EecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 55555553 56789999995 688899999999999999888765433 23336668887774 555666655544
No 118
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.7e-13 Score=149.74 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=136.5
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+..+|.|.+|+||+|++.+++.|...+.. ++.++.+||+||+|+|||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 34678899999999999999999998853 2345679999999999999999999998652
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
++.+++.. ...-..++.+.+.+. .....|++|||+|.|. ...+
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~ 136 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAF 136 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHH
Confidence 22222110 011122444443332 2234699999998774 2356
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|++.++..... +++|.+|+.+..+.++|++||. .+.|..++.++...+++..+....+. ++..+..
T Consensus 137 naLLK~LEepp~~----------~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~l 205 (563)
T PRK06647 137 NALLKTIEEPPPY----------IVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKW 205 (563)
T ss_pred HHHHHhhccCCCC----------EEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7889888864432 6677777778899999999995 78899999999998888777554432 3344677
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~ 459 (522)
|+..+.| +.+++.+++..+.
T Consensus 206 La~~s~G-dlR~alslLdkli 225 (563)
T PRK06647 206 IAYKSTG-SVRDAYTLFDQVV 225 (563)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 8888876 6777777776554
No 119
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.57 E-value=7.2e-14 Score=146.49 Aligned_cols=227 Identities=21% Similarity=0.283 Sum_probs=145.7
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhh------hccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh-hhhh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYF------QGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA-SKWR 312 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~------~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~-~~~~ 312 (522)
|+|++++++.|..++......-... .+......+|||+||||||||++|+++|..++.+|+.++++.+. ..|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 8999999999988774322111100 00112246899999999999999999999999999999988875 3566
Q ss_pred chh-HHHHHHHHHHH----HhhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcCCC---CCCCCCCcce
Q 009911 313 GES-ERMVRCLFDLA----RAYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVNNT---GTNEDGSRKI 382 (522)
Q Consensus 313 g~~-e~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~~~---~~~~~~~~~~ 382 (522)
|.. +..+..++..+ ....++||||||||.+..+..... .......+++.||..|++.... ..........
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 44455544322 234578999999999987542211 1112236888999999865421 1111122344
Q ss_pred EEEEeecCCC---------------------------C-----------------------CccHHHHhhcccccccCCC
Q 009911 383 VMVLAATNFP---------------------------W-----------------------DIDEALRRRLEKRIYIPLP 412 (522)
Q Consensus 383 VivIattn~p---------------------------~-----------------------~ld~aL~rRf~~~i~i~~P 412 (522)
.++|.|+|-. . -+.|+|+.|++..+.|...
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 6677776641 0 0336667788888999999
Q ss_pred CHHHHHHHHHHH----HccC-------CCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 413 NFESRKELIKIN----LKTV-------EVS---KDVDIDEVARR--TDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 413 d~~~R~~Ilk~~----l~~~-------~l~---~~~dl~~LA~~--t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
+.++..+|+... ++.+ .+. ++.-++.||+. ...|-++-|+.+++...+..+-..
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999988752 2211 111 12225567765 345667888888887776666554
No 120
>PRK06893 DNA replication initiation factor; Validated
Probab=99.57 E-value=2.7e-13 Score=132.64 Aligned_cols=189 Identities=14% Similarity=0.155 Sum_probs=115.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA 308 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~ 308 (522)
.+..+|++++|.+... .+..+.. .+..... ..++||||||||||+|++++|+++ +..+..++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~-------~~~~~~~--~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRK-------NFIDLQQ--PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHH-------HhhccCC--CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567899999755432 1111111 1111111 368999999999999999999986 3344555543211
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee
Q 009911 309 SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA 388 (522)
Q Consensus 309 ~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat 388 (522)
.. ...+++.. ....+|+||||+.+.+.. .....|+..++.....+ ..++|+++
T Consensus 80 ~~--------~~~~~~~~--~~~dlLilDDi~~~~~~~----------~~~~~l~~l~n~~~~~~-------~~illits 132 (229)
T PRK06893 80 YF--------SPAVLENL--EQQDLVCLDDLQAVIGNE----------EWELAIFDLFNRIKEQG-------KTLLLISA 132 (229)
T ss_pred hh--------hHHHHhhc--ccCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHHHcC-------CcEEEEeC
Confidence 10 11222222 245799999999875331 11223555555443322 12455556
Q ss_pred cCCCCCcc---HHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 389 TNFPWDID---EALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 389 tn~p~~ld---~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
+..|..++ +.|++|+. ..+.++.|+.+++.+|++..+....+. ++.-+..|+.+.+| +.+.+..++...
T Consensus 133 ~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 133 DCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 66665544 89999874 578899999999999999877544432 33446789998885 566677666643
No 121
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.56 E-value=3.1e-13 Score=142.58 Aligned_cols=260 Identities=18% Similarity=0.209 Sum_probs=155.7
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeehhhhhh-
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSSATLAS- 309 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~~~l~~- 309 (522)
..+.++|-++..+.|..++...+ . ...+.+++|+||||||||++++.+++.+ +..++.++|....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~------~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL------R--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh------C--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 34568998988888887764211 1 1223479999999999999999999887 57788888753321
Q ss_pred ---------hhhc--------hhHHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC
Q 009911 310 ---------KWRG--------ESERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 310 ---------~~~g--------~~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
...+ .....+..+++.... ..+.||+|||+|.+..... ...+..|+..++....
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~--------~~~l~~l~~~~~~~~~ 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG--------NDVLYSLLRAHEEYPG 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC--------chHHHHHHHhhhccCC
Confidence 1111 112333444444333 2457899999999872211 1234555544443321
Q ss_pred CCCCCCCCcceEEEEeecCCC---CCccHHHHhhcc-cccccCCCCHHHHHHHHHHHHccCC---CCCcccHHHHHHHcC
Q 009911 372 TGTNEDGSRKIVMVLAATNFP---WDIDEALRRRLE-KRIYIPLPNFESRKELIKINLKTVE---VSKDVDIDEVARRTD 444 (522)
Q Consensus 372 ~~~~~~~~~~~VivIattn~p---~~ld~aL~rRf~-~~i~i~~Pd~~~R~~Ilk~~l~~~~---l~~~~dl~~LA~~t~ 444 (522)
..+.+|+++|.. +.+++.+.+||. ..|.|+.++.++...|++..+.... ...+..++.+++.+.
T Consensus 172 ---------~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 242 (394)
T PRK00411 172 ---------ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTA 242 (394)
T ss_pred ---------CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHH
Confidence 137778887765 356788888874 5789999999999999998775321 122333566777664
Q ss_pred CC--cHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccc--------cccCCCCccHHHHHHHHHhhC----CCC-CHHHH
Q 009911 445 GY--SGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSK--------DEISKDPVAMCDFEEALTKVQ----RSV-SQADI 509 (522)
Q Consensus 445 Gy--s~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~--------~~~~~~~lt~~df~~AL~~~~----~sv-s~~~~ 509 (522)
+. ..+.+.++|..|...+..+....++.+.+..... ..+...+.....|..|+.... ..+ +.+-+
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~ 322 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVY 322 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 32 2344557788887777666544444444332211 123345566666666665442 223 33334
Q ss_pred HHHHHHHHHhc
Q 009911 510 EKHEKWFQEFG 520 (522)
Q Consensus 510 ~~~~~w~~~fg 520 (522)
+.|.+-.+.+|
T Consensus 323 ~~y~~l~~~~~ 333 (394)
T PRK00411 323 EEYKELCEELG 333 (394)
T ss_pred HHHHHHHHHcC
Confidence 55655554444
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=5.4e-13 Score=142.61 Aligned_cols=217 Identities=13% Similarity=0.173 Sum_probs=143.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeehhhhhhhhhchhHH---HHHHHHHHHHhhCCcEEEEechhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSSATLASKWRGESER---MVRCLFDLARAYAPSTIFIDEIDSL 342 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~~~l~~~~~g~~e~---~l~~~f~~a~~~~p~VL~IDEiD~l 342 (522)
.++++|||++|+|||+|++++++++ +..++.+++.++...+...... .+..+... .....+|+||||+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 4579999999999999999999965 4688899988877665433221 12211111 234679999999877
Q ss_pred hhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC---CccHHHHhhcc--cccccCCCCHHHH
Q 009911 343 CNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW---DIDEALRRRLE--KRIYIPLPNFESR 417 (522)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~---~ld~aL~rRf~--~~i~i~~Pd~~~R 417 (522)
..+ ...+..|+..++.....+. .+||++...|. .+++.|++||. ..+.+..|+.++|
T Consensus 219 ~~k----------~~~~e~lf~l~N~~~~~~k--------~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 219 SYK----------EKTNEIFFTIFNNFIENDK--------QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred cCC----------HHHHHHHHHHHHHHHHcCC--------cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 532 1233455555555443321 34444444443 45789999984 5677889999999
Q ss_pred HHHHHHHHccCCC---CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHh-hcCChHHHhhcccccc--CCCCccHH
Q 009911 418 KELIKINLKTVEV---SKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI-AGKTRDEIKNMSKDEI--SKDPVAMC 491 (522)
Q Consensus 418 ~~Ilk~~l~~~~l---~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~-~~~~~~~i~~~~~~~~--~~~~lt~~ 491 (522)
.+|++..+....+ .++..+..||..+.| +.+.|..+|..+...+..... ..++.+.+..+-.+.. ....+|.+
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~~~~~~t~~ 359 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTSKLGILNVK 359 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccccccCCCCHH
Confidence 9999988875432 233447789998886 788899999877765555421 3455555554443322 12358888
Q ss_pred HHHHHHHhhCCCCCHHHH
Q 009911 492 DFEEALTKVQRSVSQADI 509 (522)
Q Consensus 492 df~~AL~~~~~svs~~~~ 509 (522)
++.+++.+.- .++.+++
T Consensus 360 ~I~~~Va~~~-~i~~~dl 376 (450)
T PRK14087 360 KIKEVVSEKY-GISVNAI 376 (450)
T ss_pred HHHHHHHHHc-CCCHHHH
Confidence 8888888776 6666665
No 123
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.55 E-value=8.8e-13 Score=129.54 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=126.6
Q ss_pred CCCCCccccc-C-cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhh
Q 009911 232 SPGVRWDDVA-G-LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSAT 306 (522)
Q Consensus 232 ~~~~~~~di~-G-~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~ 306 (522)
.+..+|++++ | ...+...+......+ ...+++||||+|||||+|++++|+++. ..+..++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~~------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQE------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3456788877 4 455666666544321 124899999999999999999998764 3455555544
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVL 386 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivI 386 (522)
.... ...+++.... ..+|+||||+.+..+. .....|+..++.....+ ...+|+
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~----------~~~~~lf~l~n~~~e~g-------~~~li~ 136 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE----------LWEMAIFDLYNRILESG-------RTRLLI 136 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH----------HHHHHHHHHHHHHHHcC-------CCeEEE
Confidence 3211 1111221111 2689999999875321 11223333333322211 113455
Q ss_pred eecCCCCC---ccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 387 AATNFPWD---IDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 387 attn~p~~---ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
++++.|.. +.+.|++||. ..+.+..|+.+++.++++.......+. ++.-++.|+.+.+| +.+.+..++.....
T Consensus 137 ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~ 215 (235)
T PRK08084 137 TGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDR 215 (235)
T ss_pred eCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 55555544 5799999995 688999999999999998755543332 33347889999886 67777777765322
Q ss_pred HHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHH
Q 009911 461 NGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALT 498 (522)
Q Consensus 461 ~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~ 498 (522)
.++.+ ..+||...+.++|.
T Consensus 216 ~~l~~-------------------~~~it~~~~k~~l~ 234 (235)
T PRK08084 216 ASITA-------------------QRKLTIPFVKEILK 234 (235)
T ss_pred HHHhc-------------------CCCCCHHHHHHHHc
Confidence 22111 34688777777663
No 124
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.55 E-value=6.8e-13 Score=129.49 Aligned_cols=202 Identities=17% Similarity=0.191 Sum_probs=130.9
Q ss_pred CCCCccccc--CcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh
Q 009911 233 PGVRWDDVA--GLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL 307 (522)
Q Consensus 233 ~~~~~~di~--G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l 307 (522)
++.+|++++ +.+.+...+.++... .....+++|+||+|||||+||+++++++ +..++.+++..+
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 467788877 345666666665431 1233589999999999999999999886 667888887765
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEe
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLA 387 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIa 387 (522)
... +. ......+|+|||+|.+.. ..+..|+..++...... ..+++++
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~------------~~~~~L~~~~~~~~~~~-------~~~vl~~ 128 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDD------------AQQIALFNLFNRVRAHG-------QGALLVA 128 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCc------------hHHHHHHHHHHHHHHcC-------CcEEEEe
Confidence 321 11 112357999999997631 12234555554433221 1134444
Q ss_pred ecCCC--CCccHHHHhhc--ccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 388 ATNFP--WDIDEALRRRL--EKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 388 ttn~p--~~ld~aL~rRf--~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
++..| +.+.+.|++|| ...+.++.|+.+++..+++.......+. ++.-+..|+..+.| +.+++..+++.-...+
T Consensus 129 ~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 129 GPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 44333 34568889888 4689999999988999998776544332 23346778887775 7777888887543323
Q ss_pred HHHHhhcCChHHHhhccccccCCCCccHHHHHHHHH
Q 009911 463 MRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALT 498 (522)
Q Consensus 463 ~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~ 498 (522)
... ..+||...+.++|.
T Consensus 208 ~~~-------------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQ-------------------KRPVTLPLLREMLA 224 (227)
T ss_pred HHh-------------------CCCCCHHHHHHHHh
Confidence 222 45788888887775
No 125
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.54 E-value=7.7e-13 Score=128.67 Aligned_cols=190 Identities=16% Similarity=0.198 Sum_probs=123.5
Q ss_pred CCCccccc--CcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh
Q 009911 234 GVRWDDVA--GLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA 308 (522)
Q Consensus 234 ~~~~~di~--G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~ 308 (522)
+.+|++++ +...+.+.|..++.. ....+++|+||+|||||++|+++++.+ +.+++.+++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 45677776 356677777776531 223589999999999999999999887 4688899988876
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee
Q 009911 309 SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA 388 (522)
Q Consensus 309 ~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat 388 (522)
... ..++... ....+|||||+|.+.... ..+..|...++...... ..+|+++
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~~~~--------~~iIits 130 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQP----------EWQEALFHLYNRVREAG--------GRLLIAG 130 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHHHcC--------CeEEEEC
Confidence 432 1222222 234699999999874221 01233444444332211 1344444
Q ss_pred cCCCCCc--c-HHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 389 TNFPWDI--D-EALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 389 tn~p~~l--d-~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
+..+..+ . +.|.+||. ..+.+|.|+.+++..+++..+....+. ++.-+..|+..+. .+.+++.++++++...+
T Consensus 131 ~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 131 RAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRAS 209 (226)
T ss_pred CCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 4444333 2 78888874 688999999999999999876544332 2334677888655 48889999998766544
Q ss_pred HH
Q 009911 463 MR 464 (522)
Q Consensus 463 ~~ 464 (522)
.+
T Consensus 210 ~~ 211 (226)
T TIGR03420 210 LA 211 (226)
T ss_pred HH
Confidence 44
No 126
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.53 E-value=1.4e-12 Score=143.68 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=122.0
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeehhhh
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----------GTTFFNVSSATL 307 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----------g~~~i~v~~~~l 307 (522)
+.|.|-++-.+.|..++.--+ .+ ..+...++|+|+||||||++++.++.++ .+.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paI------kg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGI------KQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHH------hc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 568999998888888775322 11 1222345799999999999999998876 256788988543
Q ss_pred hhh----------h------hc-hhHHHHHHHHHHHH--hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 308 ASK----------W------RG-ESERMVRCLFDLAR--AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 308 ~~~----------~------~g-~~e~~l~~~f~~a~--~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
... + .| .....+..+|.... .....||+|||||.|.... ...|+..++.
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR~ 895 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFDW 895 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHHH
Confidence 211 1 01 12344566665542 2234699999999987431 1334444442
Q ss_pred cCCCCCCCCCCcceEEEEeecCC---CCCccHHHHhhccc-ccccCCCCHHHHHHHHHHHHccCC-CCCcccHHHHHHHc
Q 009911 369 VNNTGTNEDGSRKIVMVLAATNF---PWDIDEALRRRLEK-RIYIPLPNFESRKELIKINLKTVE-VSKDVDIDEVARRT 443 (522)
Q Consensus 369 ~~~~~~~~~~~~~~VivIattn~---p~~ld~aL~rRf~~-~i~i~~Pd~~~R~~Ilk~~l~~~~-l~~~~dl~~LA~~t 443 (522)
.... ...++||+++|. +..+++.+++||.. .|.|++++.+++..||+..+.... +..+..+..+|+..
T Consensus 896 ~~~s-------~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 896 PTKI-------NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred hhcc-------CCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 2211 134888899986 46778899998864 488899999999999998887532 22333356666644
Q ss_pred CCCcHHHHHHHH
Q 009911 444 DGYSGDDLTNVC 455 (522)
Q Consensus 444 ~Gys~~dI~~lv 455 (522)
. ...+|++.++
T Consensus 969 A-q~SGDARKAL 979 (1164)
T PTZ00112 969 A-NVSGDIRKAL 979 (1164)
T ss_pred h-hcCCHHHHHH
Confidence 4 2334555544
No 127
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.52 E-value=4.4e-13 Score=126.78 Aligned_cols=187 Identities=19% Similarity=0.223 Sum_probs=123.6
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-C----CcEEEe
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-G----TTFFNV 302 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-g----~~~i~v 302 (522)
|+++|.++.++||+|.+++...|..+... +..| +++|.|||||||||-+.++|+++ | --++++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~----------gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE----------GNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc----------CCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 88999999999999999999998876643 2233 99999999999999999999998 3 246777
Q ss_pred ehhhhhhhhhchhHHHHHHHHHHHHhhC-C---cEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCC
Q 009911 303 SSATLASKWRGESERMVRCLFDLARAYA-P---STIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDG 378 (522)
Q Consensus 303 ~~~~l~~~~~g~~e~~l~~~f~~a~~~~-p---~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~ 378 (522)
++++-.+ .......+ ..|..-+-.- | .||++||+|++... .+..|...|+-....
T Consensus 85 NASdeRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~g------------AQQAlRRtMEiyS~t------ 143 (333)
T KOG0991|consen 85 NASDERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTAG------------AQQALRRTMEIYSNT------ 143 (333)
T ss_pred cCccccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchhhhH------------HHHHHHHHHHHHccc------
Confidence 7776432 11112222 2343333222 2 49999999998643 234555556544443
Q ss_pred CcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 379 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 379 ~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
.-++.+||....+-+.+.+||. .+.+...+..+...=+....+...+. .+.-++.+.-..+| |+++.++
T Consensus 144 ----tRFalaCN~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 144 ----TRFALACNQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred ----chhhhhhcchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHH
Confidence 4588899999999999999996 56666665554433333333222222 33446666666665 5666555
No 128
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.51 E-value=8.1e-13 Score=146.34 Aligned_cols=240 Identities=22% Similarity=0.263 Sum_probs=146.2
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC--------- 295 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l--------- 295 (522)
.+.+...+.+.+|++|+|.+.+.+.+...+..+ .+.+++|+||||||||++|+++++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~ 208 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFA 208 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCccc
Confidence 344556677889999999999988887766432 12479999999999999999998766
Q ss_pred -CCcEEEeehhhhhh-------hhhchhHH-H---HHHHHHH----------HHhhCCcEEEEechhhhhhccCCCCchh
Q 009911 296 -GTTFFNVSSATLAS-------KWRGESER-M---VRCLFDL----------ARAYAPSTIFIDEIDSLCNARGASGEHE 353 (522)
Q Consensus 296 -g~~~i~v~~~~l~~-------~~~g~~e~-~---l~~~f~~----------a~~~~p~VL~IDEiD~l~~~~~~~~~~~ 353 (522)
+.+|+.+++..+.. .+.+.... . ....+.. ......++|||||++.|.
T Consensus 209 ~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld---------- 278 (615)
T TIGR02903 209 EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD---------- 278 (615)
T ss_pred CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC----------
Confidence 35789998876521 11111000 0 0000000 011234699999998763
Q ss_pred hHHHHHHHHHHHhhhcCC---CC---------------CCCCC-CcceEEEEeecCCCCCccHHHHhhcccccccCCCCH
Q 009911 354 SSRRVKSELLVQVDGVNN---TG---------------TNEDG-SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNF 414 (522)
Q Consensus 354 ~~~~~~~~Ll~~ld~~~~---~~---------------~~~~~-~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~ 414 (522)
...+..|+..|+.-.. .. ..... ....++|.+|++.++.++++|++||. .+.++.++.
T Consensus 279 --~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~ 355 (615)
T TIGR02903 279 --PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTP 355 (615)
T ss_pred --HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCH
Confidence 3344566666653210 00 00001 12234555566778899999999996 678888999
Q ss_pred HHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHH
Q 009911 415 ESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDF 493 (522)
Q Consensus 415 ~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df 493 (522)
++...|++..+....+. .+.-+..|+..+. .++...+++.++...++.+... . .+.-....|+.+|+
T Consensus 356 edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~------~----~~~~~~~~I~~edv 423 (615)
T TIGR02903 356 EDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAE------A----GKENDKVTITQDDV 423 (615)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH------h----ccCCCCeeECHHHH
Confidence 99999999988764322 1222344555432 3455555555665444443310 0 00112457999999
Q ss_pred HHHHHhhC
Q 009911 494 EEALTKVQ 501 (522)
Q Consensus 494 ~~AL~~~~ 501 (522)
.+++..-+
T Consensus 424 ~~~l~~~r 431 (615)
T TIGR02903 424 YEVIQISR 431 (615)
T ss_pred HHHhCCCc
Confidence 99998765
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.3e-12 Score=144.23 Aligned_cols=190 Identities=16% Similarity=0.203 Sum_probs=136.3
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT---------- 298 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~---------- 298 (522)
.++|.+.+|+||+|++.+++.|..++.. ++.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 5678999999999999999999998753 2344679999999999999999999988642
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
++.+++.. ...-..++.+.+.+... ...|++|||+|.|. ....
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~ 138 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAF 138 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHH
Confidence 22222211 01123355555554322 23599999998874 2356
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCC-cccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSK-DVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~-~~dl~~ 438 (522)
+.|++.|+..... +++|.+|+.+..+.++|++||. .+.|..++.++....++..+....+.- ...+..
T Consensus 139 naLLK~LEepp~~----------tifIL~tt~~~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~ 207 (614)
T PRK14971 139 NAFLKTLEEPPSY----------AIFILATTEKHKILPTILSRCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNV 207 (614)
T ss_pred HHHHHHHhCCCCC----------eEEEEEeCCchhchHHHHhhhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7899999875433 5566666677899999999994 799999999998888887776554432 234678
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~ 459 (522)
|+..+.| +.+++.+++....
T Consensus 208 La~~s~g-dlr~al~~Lekl~ 227 (614)
T PRK14971 208 IAQKADG-GMRDALSIFDQVV 227 (614)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 8888865 5666666665543
No 130
>PRK08727 hypothetical protein; Validated
Probab=99.50 E-value=3.5e-12 Score=125.11 Aligned_cols=180 Identities=20% Similarity=0.263 Sum_probs=111.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA 348 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~ 348 (522)
..++|+||+|||||+|+.++|+++ +..++.++...+... +..+++.. ....+|+||||+.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEAL--EGRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHH--hcCCEEEEeCcccccCCh--
Confidence 469999999999999999998775 556677776553322 22333322 345799999999875332
Q ss_pred CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCC---ccHHHHhhc--ccccccCCCCHHHHHHHHHH
Q 009911 349 SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWD---IDEALRRRL--EKRIYIPLPNFESRKELIKI 423 (522)
Q Consensus 349 ~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~---ld~aL~rRf--~~~i~i~~Pd~~~R~~Ilk~ 423 (522)
. ....|+..++....... -+|+++...|.. +++.|++|| ...+.++.|+.+++..|++.
T Consensus 110 ----~----~~~~lf~l~n~~~~~~~--------~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 110 ----E----DEVALFDFHNRARAAGI--------TLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred ----H----HHHHHHHHHHHHHHcCC--------eEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 1 12334444444332211 244444445544 469999996 46788999999999999998
Q ss_pred HHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHh
Q 009911 424 NLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTK 499 (522)
Q Consensus 424 ~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~ 499 (522)
.+....+. ++..+..|+.+++| +.+.+.++++.....+... ...||...+.+.|..
T Consensus 174 ~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~-------------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 174 RAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA-------------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh-------------------CCCCCHHHHHHHHhh
Confidence 66443332 33447788888775 4444444455333222221 236788777777754
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=99.49 E-value=3.9e-12 Score=124.85 Aligned_cols=179 Identities=16% Similarity=0.190 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA 348 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~ 348 (522)
..++||||+|+|||+|++++|+++ +..++.++..++.... ..+.+.... ..+|+|||++.+..+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 589999999999999999999765 6788888887765421 122222222 3699999999774321
Q ss_pred CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC--C-ccHHHHhhcc--cccccCCCCHHHHHHHHHH
Q 009911 349 SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW--D-IDEALRRRLE--KRIYIPLPNFESRKELIKI 423 (522)
Q Consensus 349 ~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~--~-ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~ 423 (522)
.....|+..++.....+. .+|++++..|. . +.+.|++||. ..+.+..|+.+++..+++.
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~--------~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGR--------RLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCC--------EEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 123446666655543322 56666666563 3 3689999994 5677899999999999995
Q ss_pred HHccCCC-CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHH
Q 009911 424 NLKTVEV-SKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALT 498 (522)
Q Consensus 424 ~l~~~~l-~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~ 498 (522)
.+....+ -++.-++.|+.+.+| +.+.+..+++.-...++.. ..+||+.-+.++|.
T Consensus 178 ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~-------------------~~~it~~~~~~~L~ 233 (234)
T PRK05642 178 RASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA-------------------QRKLTIPFLKETLG 233 (234)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc-------------------CCcCCHHHHHHHhc
Confidence 5544333 233446788888885 6777777776443222221 35677777776663
No 132
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=3.9e-12 Score=132.32 Aligned_cols=187 Identities=18% Similarity=0.152 Sum_probs=124.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE-----------
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF----------- 300 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i----------- 300 (522)
..+.++++|+|++.+++.|..++.. ++.++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3578899999999999999998764 344578999999999999999999998843110
Q ss_pred ----Eeeh---hhhh----------h-hhhch--------hHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCC
Q 009911 301 ----NVSS---ATLA----------S-KWRGE--------SERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASG 350 (522)
Q Consensus 301 ----~v~~---~~l~----------~-~~~g~--------~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~ 350 (522)
.-.| ..+. . .+.+. .-..++.+.+.+. ...+.||+|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0000 0000 0 00000 0122344333322 2346799999998763
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC
Q 009911 351 EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV 430 (522)
Q Consensus 351 ~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l 430 (522)
....+.||+.++..... +++|.+|+.++.+.+.+++|| ..+.|+.|+.++..+++......
T Consensus 155 -----~~aanaLLK~LEepp~~----------~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~--- 215 (365)
T PRK07471 155 -----ANAANALLKVLEEPPAR----------SLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD--- 215 (365)
T ss_pred -----HHHHHHHHHHHhcCCCC----------eEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---
Confidence 34567899999865432 677778899999999999999 48999999999999888765421
Q ss_pred CCcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 431 SKDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 431 ~~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
..+..+..++..+.| ++.....++.
T Consensus 216 ~~~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 216 LPDDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 112223567777776 4444445553
No 133
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=9.4e-13 Score=148.00 Aligned_cols=213 Identities=18% Similarity=0.224 Sum_probs=140.3
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh-----hhhch
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS-----KWRGE 314 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~-----~~~g~ 314 (522)
|+|++++++.|.+++..... . .....+|..++||+||||||||++|+++|..++.+|+.++++.+.. .+.|.
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~--g-l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRA--G-LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhc--c-ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC
Confidence 78899999988888754210 0 0111345567999999999999999999999999999999877532 22221
Q ss_pred h----H-HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC-CCCCCCCCcceEEEEee
Q 009911 315 S----E-RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN-TGTNEDGSRKIVMVLAA 388 (522)
Q Consensus 315 ~----e-~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~-~~~~~~~~~~~VivIat 388 (522)
. . ..-..+.+..+....+||||||||++. ..+++.|+..|+.-.- .......+..+++||+|
T Consensus 537 ~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 1 0 001122333345556899999999874 3477888888884321 11112223356889999
Q ss_pred cCCC-------------------------CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccC-------CCCCcc--
Q 009911 389 TNFP-------------------------WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTV-------EVSKDV-- 434 (522)
Q Consensus 389 tn~p-------------------------~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~-------~l~~~~-- 434 (522)
||.- ..+.|.|+.|++..|.|+..+.++...|+...+..+ .+.-.+
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 9832 124588889999999999999999999998766421 222112
Q ss_pred -cHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 435 -DIDEVARRT--DGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 435 -dl~~LA~~t--~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
-++.|+... ..|-++.|..+++.-....+...+
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 245566532 245577888888877776666553
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.47 E-value=5.2e-12 Score=122.66 Aligned_cols=197 Identities=21% Similarity=0.330 Sum_probs=123.7
Q ss_pred CCCCCccccc-C--cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEee
Q 009911 232 SPGVRWDDVA-G--LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVS 303 (522)
Q Consensus 232 ~~~~~~~di~-G--~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~ 303 (522)
+|..+|++++ | ...+...+......+ ......++||||+|+|||+|++++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3567888885 5 344455554444322 1223479999999999999999999885 57899999
Q ss_pred hhhhhhhhhchhHH-HHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcce
Q 009911 304 SATLASKWRGESER-MVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI 382 (522)
Q Consensus 304 ~~~l~~~~~g~~e~-~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~ 382 (522)
+.++...+...... .+..+.+.. ....+|+||+++.+..+ ...+..|+..++.+...+.
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~~~~~~k-------- 131 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK----------QRTQEELFHLFNRLIESGK-------- 131 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH----------HHHHHHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc----------hHHHHHHHHHHHHHHhhCC--------
Confidence 88876654332211 112222222 24579999999998633 2345667777766654432
Q ss_pred EEEEeecCCCC---CccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHHHcCCCcHHHHHHHHH
Q 009911 383 VMVLAATNFPW---DIDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVSK-DVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 383 VivIattn~p~---~ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~-~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
.+|+++...|. .+++.|++||. ..+.+..|+.++|..|++.......+.- +.-+..|+...+ -+.++|..+++
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~ 210 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALN 210 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHH
T ss_pred eEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHH
Confidence 45666656664 35689999985 4788899999999999998887655442 233677888877 47788888877
Q ss_pred HHH
Q 009911 457 DAS 459 (522)
Q Consensus 457 ~A~ 459 (522)
.-.
T Consensus 211 ~l~ 213 (219)
T PF00308_consen 211 RLD 213 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 135
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.47 E-value=1.8e-12 Score=139.52 Aligned_cols=219 Identities=18% Similarity=0.232 Sum_probs=141.7
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhh-------------------c----cCCCC-ceEEEEcCCCC
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ-------------------G----IRRPW-KGVLMFGPPGT 282 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~-------------------~----~~~~~-~~vLL~GppGt 282 (522)
.|+++|.+..|.|+.|-+.+-+.+.-++.. |-+-.|. . .++|. +-+||+||||-
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~--WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQ--WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHh--hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 689999999999999999999888877643 3332222 1 12333 45889999999
Q ss_pred cHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 283 GKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 283 GKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
||||||+.||+.+|..++++++++-.+ .......|..+...-. ..+|.+|+|||||-- .+..
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------------~~~~ 403 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------------PRAA 403 (877)
T ss_pred ChhHHHHHHHHhcCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCC------------cHHH
Confidence 999999999999999999999987432 1112222332222221 246999999999731 1445
Q ss_pred HHHHHHHhhhcCCCCCCCCC-----------CcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHH
Q 009911 359 KSELLVQVDGVNNTGTNEDG-----------SRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINL 425 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~-----------~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l 425 (522)
+..|+..+..-.....+... ..-.-.|||.||+.. -|+|+. -|...|+|+.|......+=|+..+
T Consensus 404 Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC 481 (877)
T KOG1969|consen 404 VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEIC 481 (877)
T ss_pred HHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHH
Confidence 56666655521111000000 001135899999643 466665 577899999998888777777666
Q ss_pred ccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 426 KTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 426 ~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
....+. .|...|...++ ++..||+..++.-...+.+..
T Consensus 482 ~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 482 HRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred hhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 555444 34444444444 455699999987776665443
No 136
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.46 E-value=7.1e-12 Score=119.39 Aligned_cols=194 Identities=22% Similarity=0.265 Sum_probs=136.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSAT 306 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~ 306 (522)
..++.+.+.+|+|.+.+++.|.+-.... . .+.|.++|||||..|||||+|++|+-++. |..+++|+..+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F------~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQF------A--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHH------H--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 4466789999999999999998755431 1 24566799999999999999999999888 67899999887
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhC-CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYA-PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
+.. +-.+++..+... .-|||||++- ........ ..|-..|+|-. .+.+.+|+|
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-------Fe~gd~~y----K~LKs~LeG~v------e~rP~NVl~ 177 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLS-------FEEGDDAY----KALKSALEGGV------EGRPANVLF 177 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCC-------CCCCchHH----HHHHHHhcCCc------ccCCCeEEE
Confidence 654 455666665543 5699999982 11122222 33333445322 235577999
Q ss_pred EeecCCCCCccH----------------------HHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCc---ccHHH--
Q 009911 386 LAATNFPWDIDE----------------------ALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKD---VDIDE-- 438 (522)
Q Consensus 386 Iattn~p~~ld~----------------------aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~---~dl~~-- 438 (522)
.+|+|+...|++ .|-.||...+.|+.++.++...|+..+.+...+.-+ .+.+.
T Consensus 178 YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~ 257 (287)
T COG2607 178 YATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQ 257 (287)
T ss_pred EEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999998765542 233499999999999999999999999988776542 22222
Q ss_pred HHHHcCCCcHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~ 457 (522)
-|..-.|-||+-..+.+++
T Consensus 258 WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 258 WATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHhcCCCccHhHHHHHHH
Confidence 2334446777766666554
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.45 E-value=2.7e-12 Score=128.16 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=93.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh------hhhhhhhchhHH-HHHH-------------------HHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA------TLASKWRGESER-MVRC-------------------LFDL 325 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~------~l~~~~~g~~e~-~l~~-------------------~f~~ 325 (522)
.++||+||||||||++|+++|..+|.+|+.+++. ++.+.+.+.... .+.. .+-.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4899999999999999999999999999988764 333333222111 1111 0111
Q ss_pred HHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC--CC-CC---CCCCcceEEEEeecCCC-----CC
Q 009911 326 ARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN--TG-TN---EDGSRKIVMVLAATNFP-----WD 394 (522)
Q Consensus 326 a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~--~~-~~---~~~~~~~VivIattn~p-----~~ 394 (522)
|. ....+|+||||+.+. ..+++.|+..|+.-.- .. .. .......+.||+|+|.. ..
T Consensus 102 A~-~~g~~lllDEi~r~~------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AV-REGFTLVYDEFTRSK------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HH-HcCCEEEEcchhhCC------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 11 234799999998753 3456777777764210 00 00 00012346789999975 26
Q ss_pred ccHHHHhhcccccccCCCCHHHHHHHHHHHH
Q 009911 395 IDEALRRRLEKRIYIPLPNFESRKELIKINL 425 (522)
Q Consensus 395 ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l 425 (522)
++++|++|| ..++++.|+.++..+|++..+
T Consensus 169 l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 689999999 589999999999999998764
No 138
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=1.1e-11 Score=128.30 Aligned_cols=191 Identities=16% Similarity=0.138 Sum_probs=125.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEe--
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT-------FFNV-- 302 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~-------~i~v-- 302 (522)
..+..+++|+|++++++.|..++.. ++.++.+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3477899999999999999998753 3444689999999999999999999998651 1100
Q ss_pred --ehh---hhhhh-------h------h-c-----hhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhh
Q 009911 303 --SSA---TLASK-------W------R-G-----ESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHES 354 (522)
Q Consensus 303 --~~~---~l~~~-------~------~-g-----~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~ 354 (522)
.|. .+... . . + -.-..++.+.+... .....||+|||+|.|.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 111 11000 0 0 0 00122333322222 2234699999999874
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcc
Q 009911 355 SRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDV 434 (522)
Q Consensus 355 ~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~ 434 (522)
....+.||+.+++.... +++|..|+.++.+.+.+++|| ..+.|+.|+.++...+++....... .++.
T Consensus 155 -~~aanaLLk~LEEpp~~----------~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~ 221 (351)
T PRK09112 155 -RNAANAILKTLEEPPAR----------ALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGE 221 (351)
T ss_pred -HHHHHHHHHHHhcCCCC----------ceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHH
Confidence 33457799999875432 455666788889999999999 5999999999999999987432222 1122
Q ss_pred cHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 435 DIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 435 dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
.+..++..+.| +++...+++...
T Consensus 222 ~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 222 ITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHHHHHHHcCC-CHHHHHHHHhcC
Confidence 35677777776 444455555433
No 139
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.8e-13 Score=131.21 Aligned_cols=131 Identities=28% Similarity=0.391 Sum_probs=93.8
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhc---cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh-hhhhchh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQG---IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA-SKWRGES 315 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~---~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~-~~~~g~~ 315 (522)
++|++.+|+.|--++.....+-..... ....-.+|||.||+|||||.||+.+|+.+++||-.-++++|. ..|.|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 789999988887666432211111100 112235899999999999999999999999999999999987 4677775
Q ss_pred -HHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcC
Q 009911 316 -ERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVN 370 (522)
Q Consensus 316 -e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~ 370 (522)
|..+..++..|. ....+||||||||++..+..+. ..+.....++..||+.|++..
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTv 204 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTV 204 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCce
Confidence 555566655443 2245899999999998765332 233355678999999999753
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.5e-11 Score=127.97 Aligned_cols=217 Identities=20% Similarity=0.311 Sum_probs=145.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 344 (522)
+.+.++||||.|+|||+|++|++++. +..++.++...+...+.......-..-|.... .-.+|+||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 44689999999999999999999988 45788888887766554333221222333333 447999999999875
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCc---cHHHHhhcc--cccccCCCCHHHHHH
Q 009911 345 ARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDI---DEALRRRLE--KRIYIPLPNFESRKE 419 (522)
Q Consensus 345 ~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~l---d~aL~rRf~--~~i~i~~Pd~~~R~~ 419 (522)
+. +.+.+|...+..+...+. -+|+++-..|..+ .+.|++||. ..+.+..||.+.|..
T Consensus 190 k~----------~~qeefFh~FN~l~~~~k--------qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 190 KE----------RTQEEFFHTFNALLENGK--------QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred Ch----------hHHHHHHHHHHHHHhcCC--------EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 53 234666666666655432 4666666667554 489999985 567788999999999
Q ss_pred HHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccC--CCCccHHHHHHH
Q 009911 420 LIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEIS--KDPVAMCDFEEA 496 (522)
Q Consensus 420 Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~--~~~lt~~df~~A 496 (522)
||+.......+. ++.-+..||.+.+ -+.++|..++......+.-... .++.+.+.+.-.+... .. +|.+++.+.
T Consensus 252 iL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~~~-itie~I~~~ 328 (408)
T COG0593 252 ILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAGEK-ITIEDIQKI 328 (408)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhccccc-CCHHHHHHH
Confidence 999866554443 2334677888877 4778888887766555544432 3444433333222211 25 999999999
Q ss_pred HHhhCCCCCHHHHH
Q 009911 497 LTKVQRSVSQADIE 510 (522)
Q Consensus 497 L~~~~~svs~~~~~ 510 (522)
+.+.- -|+.+++.
T Consensus 329 Va~~y-~v~~~dl~ 341 (408)
T COG0593 329 VAEYY-NVKVSDLL 341 (408)
T ss_pred HHHHh-CCCHHHhh
Confidence 88876 56666553
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.44 E-value=2.8e-12 Score=145.39 Aligned_cols=212 Identities=19% Similarity=0.234 Sum_probs=140.9
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh--------
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK-------- 310 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~-------- 310 (522)
.|+|++++++.|.+.+.... .-+....+|..++||+||+|||||+||+++|..++.+++.++++.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~---~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSR---AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHh---cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhc
Confidence 36778888887777664310 0011122444568999999999999999999999999999998765431
Q ss_pred ----hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-CCCCCCCcceEEE
Q 009911 311 ----WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-GTNEDGSRKIVMV 385 (522)
Q Consensus 311 ----~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-~~~~~~~~~~Viv 385 (522)
|.|..+ ...+....+....+||||||||++. ..+.+.|+..|+.-.-. ......+-.+++|
T Consensus 532 ~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~------------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 532 APPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAH------------PDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred CCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcC------------HHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 222211 1223344455566899999998764 34678888888853221 1112223456889
Q ss_pred EeecCCCC-------------------------CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC---------CC
Q 009911 386 LAATNFPW-------------------------DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE---------VS 431 (522)
Q Consensus 386 Iattn~p~-------------------------~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~---------l~ 431 (522)
|+|||... .+.+.|+.|++..|.|...+.++...|++..+..+. +.
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~ 677 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLE 677 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 99998641 145788889999999999999999999998775321 11
Q ss_pred -CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 432 -KDVDIDEVARR--TDGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 432 -~~~dl~~LA~~--t~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
++..++.|+.. ...|-++.|..+++......+...+
T Consensus 678 i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 678 LTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred eCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 12224567764 3346678888888877766665543
No 142
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.43 E-value=1.3e-12 Score=133.83 Aligned_cols=169 Identities=21% Similarity=0.239 Sum_probs=105.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------Cc--EEEee
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG-------TT--FFNVS 303 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-------~~--~i~v~ 303 (522)
.+..|.+|+|++++++.|.-....+ ...++||+|+||||||++|+++++.+. ++ +..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 3578999999999999888655432 114899999999999999999999983 21 11110
Q ss_pred hh---------hhh---------------hhhhchh--HHHH-H--HHHHHHH--hhCCcEEEEechhhhhhccCCCCch
Q 009911 304 SA---------TLA---------------SKWRGES--ERMV-R--CLFDLAR--AYAPSTIFIDEIDSLCNARGASGEH 352 (522)
Q Consensus 304 ~~---------~l~---------------~~~~g~~--e~~l-~--~~f~~a~--~~~p~VL~IDEiD~l~~~~~~~~~~ 352 (522)
+. .+. ....|.. +..+ . ..|..-. ....++||||||+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 00 000 0011110 0000 0 0011000 0112599999997753
Q ss_pred hhHHHHHHHHHHHhhhcC---CCCCCCCCCcceEEEEeecCCCC-CccHHHHhhcccccccCCCCH-HHHHHHHHHHH
Q 009911 353 ESSRRVKSELLVQVDGVN---NTGTNEDGSRKIVMVLAATNFPW-DIDEALRRRLEKRIYIPLPNF-ESRKELIKINL 425 (522)
Q Consensus 353 ~~~~~~~~~Ll~~ld~~~---~~~~~~~~~~~~VivIattn~p~-~ld~aL~rRf~~~i~i~~Pd~-~~R~~Ilk~~l 425 (522)
..++..|+..|+.-. ...+........+++++|+|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 142 ---~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 ---DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ---HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 456778888886432 01110111224478888888643 689999999999999988876 89999998743
No 143
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.4e-12 Score=138.07 Aligned_cols=213 Identities=23% Similarity=0.363 Sum_probs=152.2
Q ss_pred hHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---
Q 009911 219 DLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC--- 295 (522)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l--- 295 (522)
+..+....++........++-++|-++-++.+.+.+. ++..++-+|+|+||+|||.++.-+|...
T Consensus 151 ~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g 218 (786)
T COG0542 151 DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNG 218 (786)
T ss_pred hhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcC
Confidence 3445555666666667778889999988888888764 2344688999999999999999999887
Q ss_pred -------CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc-hhhHHHHHHHHHHH
Q 009911 296 -------GTTFFNVSSATLA--SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE-HESSRRVKSELLVQ 365 (522)
Q Consensus 296 -------g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~-~~~~~~~~~~Ll~~ 365 (522)
+..++.++...+. .+|.|+.|..++.+.+......+.||||||||.|.+.....+. -+..+-++-.|
T Consensus 219 ~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--- 295 (786)
T COG0542 219 DVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--- 295 (786)
T ss_pred CCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---
Confidence 6688999998887 4799999999999999999888899999999999876544332 22333332222
Q ss_pred hhhcCCCCCCCCCCcceEEEEeecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCc-----cc
Q 009911 366 VDGVNNTGTNEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKD-----VD 435 (522)
Q Consensus 366 ld~~~~~~~~~~~~~~~VivIattn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~-----~d 435 (522)
.+..+-+|++|..- -+-|+||-|||+ .|++..|+.++-..||+..-..+..... ..
T Consensus 296 -------------ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A 361 (786)
T COG0542 296 -------------ARGELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA 361 (786)
T ss_pred -------------hcCCeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH
Confidence 11225666666543 366899999996 8999999999999999977655443333 22
Q ss_pred HHHHHHHcCCC-----cHHHHHHHHHHHHH
Q 009911 436 IDEVARRTDGY-----SGDDLTNVCRDASL 460 (522)
Q Consensus 436 l~~LA~~t~Gy-----s~~dI~~lv~~A~~ 460 (522)
+...+..+.-| -+.---.++.+|..
T Consensus 362 l~aAv~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 362 LVAAVTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred HHHHHHHHHhhcccCCCCchHHHHHHHHHH
Confidence 44444444433 33334456665543
No 144
>PRK06620 hypothetical protein; Validated
Probab=99.41 E-value=7.4e-12 Score=121.12 Aligned_cols=174 Identities=17% Similarity=0.187 Sum_probs=108.7
Q ss_pred CCCCCcccccCcH---HHHHHHHHHHhccCcChhhhhccCCC-CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 232 SPGVRWDDVAGLT---EAKRLLEEAVVLPLWMPEYFQGIRRP-WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 232 ~~~~~~~di~G~~---~vk~~L~e~v~~pl~~~~~~~~~~~~-~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
.+..+|++++--+ .+...+.+....+ + ..| .+.++||||+|||||+|++++|+..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~--------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF--------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc--------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 3456788765533 3455555433211 0 112 2579999999999999999999988764322 1110
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEe
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLA 387 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIa 387 (522)
....+ ....+|+|||||.+. . ..|+..++.+...+. .+||+
T Consensus 79 -----------~~~~~-----~~~d~lliDdi~~~~------------~---~~lf~l~N~~~e~g~--------~ilit 119 (214)
T PRK06620 79 -----------NEEIL-----EKYNAFIIEDIENWQ------------E---PALLHIFNIINEKQK--------YLLLT 119 (214)
T ss_pred -----------chhHH-----hcCCEEEEeccccch------------H---HHHHHHHHHHHhcCC--------EEEEE
Confidence 00111 123799999998431 0 133333333332221 56676
Q ss_pred ecCCCC--CccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 388 ATNFPW--DIDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 388 ttn~p~--~ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
++..|. .+ ++|++|+. ..+.+..|+.+++..+++..+....+. ++.-++.|+.+..| +.+.+.+++..
T Consensus 120 s~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 120 SSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred cCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 666664 35 89999994 368899999999999998877654332 33447788988875 66777777764
No 145
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.40 E-value=8.9e-12 Score=128.13 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=107.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEeehh-
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG-------TTFFNVSSA- 305 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-------~~~i~v~~~- 305 (522)
...|.+|+|++++|..|....+.|. ..+|||.|++|||||++|++++..+. .+|. .++.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~------------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPK------------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCC------------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 4579999999999999999887652 24899999999999999999988773 2232 1110
Q ss_pred ------hhhhhh-------------------hchhHHH------HHHHHHHHH---------hhCCcEEEEechhhhhhc
Q 009911 306 ------TLASKW-------------------RGESERM------VRCLFDLAR---------AYAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 306 ------~l~~~~-------------------~g~~e~~------l~~~f~~a~---------~~~p~VL~IDEiD~l~~~ 345 (522)
.+.... .+-++.. +...|.... ....++||||||+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 000000 0111111 111111111 1123699999998764
Q ss_pred cCCCCchhhHHHHHHHHHHHhhhcCC---CCCCCCCCcceEEEEeecCCCC-CccHHHHhhcccccccCCCC-HHHHHHH
Q 009911 346 RGASGEHESSRRVKSELLVQVDGVNN---TGTNEDGSRKIVMVLAATNFPW-DIDEALRRRLEKRIYIPLPN-FESRKEL 420 (522)
Q Consensus 346 ~~~~~~~~~~~~~~~~Ll~~ld~~~~---~~~~~~~~~~~VivIattn~p~-~ld~aL~rRf~~~i~i~~Pd-~~~R~~I 420 (522)
..++..|+..|+.-.. ..+........+++|+|.|..+ .+.+++..||...+.+..|+ .+.+.+|
T Consensus 158 ----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 158 ----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred ----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHH
Confidence 4466778887764210 0010111223477788777554 69999999999999999997 6999999
Q ss_pred HHHHH
Q 009911 421 IKINL 425 (522)
Q Consensus 421 lk~~l 425 (522)
++...
T Consensus 228 l~~~~ 232 (350)
T CHL00081 228 VEQRT 232 (350)
T ss_pred HHhhh
Confidence 98753
No 146
>PRK09087 hypothetical protein; Validated
Probab=99.40 E-value=1.1e-11 Score=120.87 Aligned_cols=172 Identities=19% Similarity=0.270 Sum_probs=111.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~ 351 (522)
+.++|+||+|+|||+|++++|...++.++.. ..+... ++.... ..+|+|||+|.+.. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~------~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGSD-----------AANAAA---EGPVLIEDIDAGGF------D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcchH-----------HHHhhh---cCeEEEECCCCCCC------C
Confidence 3599999999999999999999877664433 222211 111111 15899999986521 1
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC--CCc-cHHHHhhcc--cccccCCCCHHHHHHHHHHHHc
Q 009911 352 HESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP--WDI-DEALRRRLE--KRIYIPLPNFESRKELIKINLK 426 (522)
Q Consensus 352 ~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p--~~l-d~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~ 426 (522)
..+|+..++.+...+. .+||+++..| |.+ .+.|++||. ..+.+..|+.++|.++++..+.
T Consensus 103 -------~~~lf~l~n~~~~~g~--------~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGT--------SLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -------HHHHHHHHHHHHhCCC--------eEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 1335555554443322 4666665555 343 688999984 6889999999999999999887
Q ss_pred cCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhh
Q 009911 427 TVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKV 500 (522)
Q Consensus 427 ~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~ 500 (522)
...+. ++..+..|+.+.+| +.+.+..+++.....+... ..+||...+.++|+.+
T Consensus 168 ~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~-------------------~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 168 DRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER-------------------KSRITRALAAEVLNEM 222 (226)
T ss_pred HcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh-------------------CCCCCHHHHHHHHHhh
Confidence 65443 33447788888874 4455555554333222221 4578888888888765
No 147
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=2e-11 Score=125.03 Aligned_cols=172 Identities=15% Similarity=0.231 Sum_probs=118.1
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------cEEEeehhhh
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT--------TFFNVSSATL 307 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~--------~~i~v~~~~l 307 (522)
+|+||+|++.+++.|...+.. ++.++.+||+||+|+|||++|+++|+.+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 589999999999999987743 344568899999999999999999998743 23333321
Q ss_pred hhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009911 308 ASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIV 383 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~V 383 (522)
.+... .-..++.+.+.+. .....|++||++|.+. ....+.||+.+++.... +
T Consensus 69 ~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEepp~~----------t 124 (313)
T PRK05564 69 NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEEPPKG----------V 124 (313)
T ss_pred cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCCC----------e
Confidence 01101 1122444444332 2234699999998874 23457899999875433 5
Q ss_pred EEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcH
Q 009911 384 MVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSG 448 (522)
Q Consensus 384 ivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~ 448 (522)
++|.+|+.++.+.+++++||. .+.|+.|+.++....+...+.. + .+..+..++..++|-.+
T Consensus 125 ~~il~~~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 125 FIILLCENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EEEEEeCChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 566666788999999999995 8999999998887777655432 1 22335567777776433
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=9.5e-11 Score=119.71 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=123.8
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT----------------- 298 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~----------------- 298 (522)
.|++|+|++.+++.|...+.. ++.++.+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 488999999999999998854 3445799999999999999999999987332
Q ss_pred -EEEeehhhhh-hh--------hhc-------h-hHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHH
Q 009911 299 -FFNVSSATLA-SK--------WRG-------E-SERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSR 356 (522)
Q Consensus 299 -~i~v~~~~l~-~~--------~~g-------~-~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~ 356 (522)
++.+.+.... ++ ..| . .-..++.+...+.. ....|++||++|.|. .
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------~ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------E 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------H
Confidence 1222221100 00 000 0 01124444443332 234699999998874 2
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccH
Q 009911 357 RVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDI 436 (522)
Q Consensus 357 ~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl 436 (522)
...+.||+.|++.. . +++|..|+.++.|-+++++|| ..+.|+.++.++...+++....... .+.++
T Consensus 139 ~aaNaLLK~LEEPp-~----------~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~ 204 (314)
T PRK07399 139 AAANALLKTLEEPG-N----------GTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINF 204 (314)
T ss_pred HHHHHHHHHHhCCC-C----------CeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHH
Confidence 35588999998765 2 356667778999999999999 4899999999999988886543211 12234
Q ss_pred HHHHHHcCCCcHHHHHHHHH
Q 009911 437 DEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 437 ~~LA~~t~Gys~~dI~~lv~ 456 (522)
..++....| +++...++++
T Consensus 205 ~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 205 PELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHHcCC-CHHHHHHHHH
Confidence 678888777 4545544554
No 149
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.35 E-value=6.6e-13 Score=125.88 Aligned_cols=151 Identities=25% Similarity=0.332 Sum_probs=71.4
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT------------------ 297 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~------------------ 297 (522)
+|.||+|++.+|+.|.-+..- .+++||+|||||||||+|+++...+.-
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 488999999999999988864 269999999999999999999987731
Q ss_pred ----------cEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhh
Q 009911 298 ----------TFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 298 ----------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld 367 (522)
+|.....+.......|......-. +.+..+ .+||||||+ .++...+++.|+..|+
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PG--eislAh-~GVLflDE~------------~ef~~~vld~Lr~ple 131 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPG--EISLAH-RGVLFLDEL------------NEFDRSVLDALRQPLE 131 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE---CGGGGT-TSEEEECET------------TTS-HHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcC--HHHHhc-CCEEEechh------------hhcCHHHHHHHHHHHH
Confidence 122211111111111110000000 011122 379999999 5567788999998887
Q ss_pred hcCCC---CCCCCCCcceEEEEeecCCC-----------------------CCccHHHHhhcccccccCCCCHH
Q 009911 368 GVNNT---GTNEDGSRKIVMVLAATNFP-----------------------WDIDEALRRRLEKRIYIPLPNFE 415 (522)
Q Consensus 368 ~~~~~---~~~~~~~~~~VivIattn~p-----------------------~~ld~aL~rRf~~~i~i~~Pd~~ 415 (522)
.-... .......+..+++|+|+|.- ..+...|+.||+..+.++..+.+
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 53211 11111133457899998842 14555666677766666655443
No 150
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.33 E-value=7.5e-11 Score=118.08 Aligned_cols=142 Identities=25% Similarity=0.213 Sum_probs=96.9
Q ss_pred CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC------------CCCccHH
Q 009911 331 PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF------------PWDIDEA 398 (522)
Q Consensus 331 p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~------------p~~ld~a 398 (522)
|.||||||+|.|- -..++.|-..|+.-. . .+||.+||+ |+-++..
T Consensus 292 pGVLFIDEvHmLD------------IE~FsFlnrAlEse~----------a-PIii~AtNRG~~kiRGTd~~sPhGIP~D 348 (450)
T COG1224 292 PGVLFIDEVHMLD------------IECFSFLNRALESEL----------A-PIIILATNRGMTKIRGTDIESPHGIPLD 348 (450)
T ss_pred cceEEEechhhhh------------HHHHHHHHHHhhccc----------C-cEEEEEcCCceeeecccCCcCCCCCCHh
Confidence 6788888887652 122333444444211 1 356666664 6788899
Q ss_pred HHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhh
Q 009911 399 LRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKN 477 (522)
Q Consensus 399 L~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~ 477 (522)
|++|+ ..|...+.+.++..+|+++......+. ++..++.|+....--|.+--.+|+.-|.+.+.+|.
T Consensus 349 lLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg----------- 416 (450)
T COG1224 349 LLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG----------- 416 (450)
T ss_pred hhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC-----------
Confidence 99999 588888899999999999888665443 34457888888777777777788888888888776
Q ss_pred ccccccCCCCccHHHHHHHHHhhCC-CCCHHHHHHHHH
Q 009911 478 MSKDEISKDPVAMCDFEEALTKVQR-SVSQADIEKHEK 514 (522)
Q Consensus 478 ~~~~~~~~~~lt~~df~~AL~~~~~-svs~~~~~~~~~ 514 (522)
...|..+|++.|-+.+-. .-|.+-+++|+.
T Consensus 417 -------~~~V~~~dVe~a~~lF~D~krSv~~v~~~~~ 447 (450)
T COG1224 417 -------SKRVEVEDVERAKELFLDVKRSVEYVEKYEG 447 (450)
T ss_pred -------CCeeehhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888999988877642 224444444443
No 151
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.3e-10 Score=120.88 Aligned_cols=253 Identities=18% Similarity=0.240 Sum_probs=154.0
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----EEEeehhhhhhhhh--
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT-----FFNVSSATLASKWR-- 312 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~-----~i~v~~~~l~~~~~-- 312 (522)
+.+-++....|..++.-.+ .+ .. +.+++++|+||||||.+++.++.++... ++.++|......+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~------~~-~~-p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLASFLAPAL------RG-ER-PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred ccccHHHHHHHHHHHHHHh------cC-CC-CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 7788888888888754322 11 22 2469999999999999999999999544 78888865433211
Q ss_pred -------------chh-HHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCC
Q 009911 313 -------------GES-ERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNED 377 (522)
Q Consensus 313 -------------g~~-e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~ 377 (522)
|.+ ...+..+++.... ....||+|||+|.|....+ .++-.|+......
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~-------- 153 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN-------- 153 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc--------
Confidence 111 2223334433333 3356889999999986532 3333333332222
Q ss_pred CCcceEEEEeecCCC---CCccHHHHhhc-ccccccCCCCHHHHHHHHHHHHccCCCC---CcccHHHH---HHHcCCCc
Q 009911 378 GSRKIVMVLAATNFP---WDIDEALRRRL-EKRIYIPLPNFESRKELIKINLKTVEVS---KDVDIDEV---ARRTDGYS 447 (522)
Q Consensus 378 ~~~~~VivIattn~p---~~ld~aL~rRf-~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~---~~~dl~~L---A~~t~Gys 447 (522)
...|.+|+.+|.. +.+++.+.++| ...|.||+.+.++...|++...+..... .+.-+..+ +....| .
T Consensus 154 --~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-D 230 (366)
T COG1474 154 --KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-D 230 (366)
T ss_pred --ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-c
Confidence 2348899999987 47789999976 3558999999999999999877543211 11112222 333333 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHhhccc--------cccCCCCccHHHHHHHHHhh-CCCCCHHHHHHHHHHHHH
Q 009911 448 GDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSK--------DEISKDPVAMCDFEEALTKV-QRSVSQADIEKHEKWFQE 518 (522)
Q Consensus 448 ~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~--------~~~~~~~lt~~df~~AL~~~-~~svs~~~~~~~~~w~~~ 518 (522)
.+-.-.+|+.|...|-++.....+.+.+..... +.+...+....-+..++... ..-.+.+-++.|.+-.++
T Consensus 231 AR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~ 310 (366)
T COG1474 231 ARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCER 310 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhh
Confidence 455556888999988888766555554433311 11223344444555555555 433444555666655554
Q ss_pred hc
Q 009911 519 FG 520 (522)
Q Consensus 519 fg 520 (522)
++
T Consensus 311 ~~ 312 (366)
T COG1474 311 LR 312 (366)
T ss_pred hC
Confidence 43
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.33 E-value=4.4e-11 Score=106.32 Aligned_cols=141 Identities=44% Similarity=0.633 Sum_probs=91.7
Q ss_pred CcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchhHHH
Q 009911 242 GLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGESERM 318 (522)
Q Consensus 242 G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~e~~ 318 (522)
|.+.+.+.+..++..+ ..++++|+||||||||++++.++..+ +.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~~~------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALELP------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 4556666666665431 23589999999999999999999999 88999999877654332221111
Q ss_pred ---HHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC--
Q 009911 319 ---VRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW-- 393 (522)
Q Consensus 319 ---l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~-- 393 (522)
....+.......+.+|+|||++.+.. .....++..+....... .....+.+|++++...
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~------------~~~~~~~~~i~~~~~~~----~~~~~~~ii~~~~~~~~~ 133 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSR------------GAQNALLRVLETLNDLR----IDRENVRVIGATNRPLLG 133 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhH------------HHHHHHHHHHHhcCcee----ccCCCeEEEEecCccccC
Confidence 11222333445678999999987621 12244555555443210 0112377888888776
Q ss_pred CccHHHHhhcccccccC
Q 009911 394 DIDEALRRRLEKRIYIP 410 (522)
Q Consensus 394 ~ld~aL~rRf~~~i~i~ 410 (522)
.+++.+.+||...+.++
T Consensus 134 ~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 134 DLDRALYDRLDIRIVIP 150 (151)
T ss_pred CcChhHHhhhccEeecC
Confidence 78899999998777765
No 153
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.32 E-value=2.7e-11 Score=124.48 Aligned_cols=163 Identities=19% Similarity=0.189 Sum_probs=102.6
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEE--------
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-------GTTFF-------- 300 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-------g~~~i-------- 300 (522)
.|..|+|++++|..|.-.+..|- ..+|||.|++|+|||+|+++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 37889999999999887776542 2489999999999999999999887 22221
Q ss_pred -Eeehhhh------------------------hhhhhchhHHHHHHHH-------HHH--HhhCCcEEEEechhhhhhcc
Q 009911 301 -NVSSATL------------------------ASKWRGESERMVRCLF-------DLA--RAYAPSTIFIDEIDSLCNAR 346 (522)
Q Consensus 301 -~v~~~~l------------------------~~~~~g~~e~~l~~~f-------~~a--~~~~p~VL~IDEiD~l~~~~ 346 (522)
..+|... .+...|... +...+ ..- ......+||||||+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d--~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~--- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLD--IERALTEGVKAFEPGLLARANRGILYIDEVNLLE--- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchh--HhhHhhcCCEEeecCcceeccCCEEEecChHhCC---
Confidence 1111110 001111110 11110 000 01123799999998763
Q ss_pred CCCCchhhHHHHHHHHHHHhhhcC---CCCCCCCCCcceEEEEeecCCCC-CccHHHHhhcccccccCCCCH-HHHHHHH
Q 009911 347 GASGEHESSRRVKSELLVQVDGVN---NTGTNEDGSRKIVMVLAATNFPW-DIDEALRRRLEKRIYIPLPNF-ESRKELI 421 (522)
Q Consensus 347 ~~~~~~~~~~~~~~~Ll~~ld~~~---~~~~~~~~~~~~VivIattn~p~-~ld~aL~rRf~~~i~i~~Pd~-~~R~~Il 421 (522)
..++..|+..|+.-. ...+........+++|+|.|..+ .+.++|+.||...+.++.|+. ++|.+|+
T Consensus 145 ---------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 145 ---------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred ---------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHH
Confidence 456677887775421 00000011223478888877554 789999999999999998875 8889999
Q ss_pred HHH
Q 009911 422 KIN 424 (522)
Q Consensus 422 k~~ 424 (522)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 874
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.32 E-value=5.2e-11 Score=136.33 Aligned_cols=210 Identities=17% Similarity=0.220 Sum_probs=137.5
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh-----
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK----- 310 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~----- 310 (522)
.|+|++++.+.+.+.+...... .....+|...+||+||+|+|||.+|+++|..+ ...|+.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSR 643 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcc
Confidence 5788999998888888542100 01112333358999999999999999999999 457889998776432
Q ss_pred -------hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-CCCCCCCcce
Q 009911 311 -------WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-GTNEDGSRKI 382 (522)
Q Consensus 311 -------~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-~~~~~~~~~~ 382 (522)
|.|..+. ..+....+....+||+|||||.+. ..+.+.|+..++.-.-. ..+...+-.+
T Consensus 644 l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~------------~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 644 LKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH------------PDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred ccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC------------HHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 3332211 123344455677999999998643 34667788877743311 1112223356
Q ss_pred EEEEeecCCCC-----------------------------CccHHHHhhcccccccCCCCHHHHHHHHHHHHccC-----
Q 009911 383 VMVLAATNFPW-----------------------------DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTV----- 428 (522)
Q Consensus 383 VivIattn~p~-----------------------------~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~----- 428 (522)
.+||.|||... .+.++|++|++ .|.|...+.++...|+...+..+
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~ 788 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLK 788 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999998521 13467778996 78899999999999998776442
Q ss_pred ---CCC---CcccHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHH
Q 009911 429 ---EVS---KDVDIDEVARRTDG--YSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 429 ---~l~---~~~dl~~LA~~t~G--ys~~dI~~lv~~A~~~a~~r~ 466 (522)
.+. ++.-++.|+....+ |-++.|..+++.-...++...
T Consensus 789 ~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 789 ENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 111 12225567776643 568888888887666666554
No 155
>PHA02244 ATPase-like protein
Probab=99.30 E-value=1.1e-10 Score=119.69 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=80.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhc---hhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRG---ESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA 348 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g---~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~ 348 (522)
.+|||+||||||||+||+++|..++.+|+.++...-.....| ........-|-.+. ....+||||||+.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCH----
Confidence 489999999999999999999999999999884311111111 11111111122222 2458999999986542
Q ss_pred CCchhhHHHHHHHHHHHhhhcC-CCCCCCCCCcceEEEEeecCCC-----------CCccHHHHhhcccccccCCCCH
Q 009911 349 SGEHESSRRVKSELLVQVDGVN-NTGTNEDGSRKIVMVLAATNFP-----------WDIDEALRRRLEKRIYIPLPNF 414 (522)
Q Consensus 349 ~~~~~~~~~~~~~Ll~~ld~~~-~~~~~~~~~~~~VivIattn~p-----------~~ld~aL~rRf~~~i~i~~Pd~ 414 (522)
.++..|...++... ............+.||+|+|.+ ..+++++++|| ..|++..|+.
T Consensus 195 --------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 195 --------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred --------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 23344444443211 0000011122458899999973 46789999999 4799999984
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.30 E-value=4.8e-11 Score=136.89 Aligned_cols=212 Identities=18% Similarity=0.201 Sum_probs=138.5
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh-----
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK----- 310 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~----- 310 (522)
.|+|++++++.|..++..... -.....+|...+||+||+|||||+||+++|+.+ +..++.++++.+...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~---gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARV---GLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhh---cccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHH
Confidence 488999999999887753210 001123444578999999999999999999998 357888887765321
Q ss_pred -------hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC-CCCCCCCCcce
Q 009911 311 -------WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN-TGTNEDGSRKI 382 (522)
Q Consensus 311 -------~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~-~~~~~~~~~~~ 382 (522)
|.|..+ ...+....+....+||+|||||++. ..+.+.|+..|+.-.- ...+...+..+
T Consensus 587 l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~------------~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 587 LIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAH------------PDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred hcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCC------------HHHHHHHHHHhccCceecCCCcEEecCc
Confidence 222221 1234445555555899999998763 4567888888885321 11112223356
Q ss_pred EEEEeecCCCCC-------------------------------------ccHHHHhhcccccccCCCCHHHHHHHHHHHH
Q 009911 383 VMVLAATNFPWD-------------------------------------IDEALRRRLEKRIYIPLPNFESRKELIKINL 425 (522)
Q Consensus 383 VivIattn~p~~-------------------------------------ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l 425 (522)
++||+|||.... +.|.|++|++..|.|...+.++...|++..+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 899999885311 1246778998899999999999999998777
Q ss_pred ccC-------CCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 426 KTV-------EVS---KDVDIDEVARR--TDGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 426 ~~~-------~l~---~~~dl~~LA~~--t~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
..+ .+. ++.....|+.. ...|-++.|..+++.-....+.+.+
T Consensus 733 ~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 733 KNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred HHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 542 111 11224566664 2245678888888777666665543
No 157
>PRK04132 replication factor C small subunit; Provisional
Probab=99.29 E-value=1.5e-10 Score=130.56 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=116.2
Q ss_pred CCceEEEEc--CCCCcHHHHHHHHHHHh-----CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhC------CcEEEE
Q 009911 270 PWKGVLMFG--PPGTGKTLLAKAVATEC-----GTTFFNVSSATLASKWRGESERMVRCLFDLARAYA------PSTIFI 336 (522)
Q Consensus 270 ~~~~vLL~G--ppGtGKT~LAraiA~~l-----g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~------p~VL~I 336 (522)
|.-+-+..| |++.||||+|+++|+++ +..++++++++..+ -..++.+...+.... ..||||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 333456678 99999999999999998 56899999987422 123555554433222 259999
Q ss_pred echhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHH
Q 009911 337 DEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFES 416 (522)
Q Consensus 337 DEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~ 416 (522)
||+|.|. ...++.|++.|+..... +.+|++||.++.+.++|++|| ..+.|+.|+.++
T Consensus 637 DEaD~Lt------------~~AQnALLk~lEep~~~----------~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~ 693 (846)
T PRK04132 637 DEADALT------------QDAQQALRRTMEMFSSN----------VRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDED 693 (846)
T ss_pred ECcccCC------------HHHHHHHHHHhhCCCCC----------eEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHH
Confidence 9999874 24568899999865432 789999999999999999999 589999999998
Q ss_pred HHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 417 RKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 417 R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
....++..+....+. ++..+..|+..++| +.+...++++.+
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~ 735 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 735 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 888888777644332 34467888988887 334444455443
No 158
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=1.5e-11 Score=124.69 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=97.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh--hhchhHH----------HHHHHHHHHHhhCCcEEEEech
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK--WRGESER----------MVRCLFDLARAYAPSTIFIDEI 339 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~--~~g~~e~----------~l~~~f~~a~~~~p~VL~IDEi 339 (522)
++|||.||||||||++++.+|..++.+++.++++..... +.|.... .....+..|.. .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 589999999999999999999999999999987654432 3333110 01122333433 4578999999
Q ss_pred hhhhhccCCCCchhhHHHHHHHHHHHhhh---cCCCCCCCCC-CcceEEEEeecCCCC------------CccHHHHhhc
Q 009911 340 DSLCNARGASGEHESSRRVKSELLVQVDG---VNNTGTNEDG-SRKIVMVLAATNFPW------------DIDEALRRRL 403 (522)
Q Consensus 340 D~l~~~~~~~~~~~~~~~~~~~Ll~~ld~---~~~~~~~~~~-~~~~VivIattn~p~------------~ld~aL~rRf 403 (522)
|... ..++..|...++. +......... ..+.+.||+|.|... .+++++++||
T Consensus 144 n~a~------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF 211 (327)
T TIGR01650 144 DAGR------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRW 211 (327)
T ss_pred hccC------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhe
Confidence 8753 2344555555552 1111111111 334688999999743 5689999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHc
Q 009911 404 EKRIYIPLPNFESRKELIKINLK 426 (522)
Q Consensus 404 ~~~i~i~~Pd~~~R~~Ilk~~l~ 426 (522)
...+.+..|+.++..+|+.....
T Consensus 212 ~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 212 SIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeEeeCCCCCHHHHHHHHHhhcc
Confidence 77789999999999999986643
No 159
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.28 E-value=1.1e-10 Score=130.23 Aligned_cols=164 Identities=20% Similarity=0.220 Sum_probs=107.9
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------------------
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-------------------- 295 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-------------------- 295 (522)
.|.+|+|++.++..|....+.|- ..+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~------------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPR------------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCC------------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 37889999999999887776541 1379999999999999999999988
Q ss_pred ---------------CCcEEEeehhhhhhhhhchhHHHHHHHHHHH---------HhhCCcEEEEechhhhhhccCCCCc
Q 009911 296 ---------------GTTFFNVSSATLASKWRGESERMVRCLFDLA---------RAYAPSTIFIDEIDSLCNARGASGE 351 (522)
Q Consensus 296 ---------------g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a---------~~~~p~VL~IDEiD~l~~~~~~~~~ 351 (522)
..+|+.+.+........|... +...+... .....+|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~-------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLD-------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCC--------
Confidence 246666655443333333221 11111100 01123699999998764
Q ss_pred hhhHHHHHHHHHHHhhhcC---CCCCCCCCCcceEEEEeecCCC-CCccHHHHhhcccccccCCCC-HHHHHHHHHHHH
Q 009911 352 HESSRRVKSELLVQVDGVN---NTGTNEDGSRKIVMVLAATNFP-WDIDEALRRRLEKRIYIPLPN-FESRKELIKINL 425 (522)
Q Consensus 352 ~~~~~~~~~~Ll~~ld~~~---~~~~~~~~~~~~VivIattn~p-~~ld~aL~rRf~~~i~i~~Pd-~~~R~~Ilk~~l 425 (522)
..+++.|+..|+.-. ...+........++||+|+|.. ..+.++|++||...|.++.+. .+++.+|++..+
T Consensus 140 ----~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 140 ----DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ----HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 456788888886321 0111011122447888988843 468899999999888888764 577888887543
No 160
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.9e-11 Score=120.11 Aligned_cols=92 Identities=23% Similarity=0.342 Sum_probs=71.7
Q ss_pred CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecC----CCCCccHHHHhhcccc
Q 009911 331 PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATN----FPWDIDEALRRRLEKR 406 (522)
Q Consensus 331 p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn----~p~~ld~aL~rRf~~~ 406 (522)
-+||||||||+++.+.+.++....-..++..||-.++|..-....-....+.++||++.. .|.+|-|.|.-||...
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 358999999999987653333334457888899999987655443344556789998874 4788999999999999
Q ss_pred cccCCCCHHHHHHHHH
Q 009911 407 IYIPLPNFESRKELIK 422 (522)
Q Consensus 407 i~i~~Pd~~~R~~Ilk 422 (522)
+.+...+.++...||.
T Consensus 331 VEL~~Lt~~Df~rILt 346 (444)
T COG1220 331 VELDALTKEDFERILT 346 (444)
T ss_pred EEcccCCHHHHHHHHc
Confidence 9999999999988875
No 161
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.27 E-value=1.4e-10 Score=122.88 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=96.5
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehh-hhhhhhhchh-
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSA-TLASKWRGES- 315 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~-~l~~~~~g~~- 315 (522)
|+|.+++++.+..++.. ..+|||+||||||||++|++++..++. +|..+.+. .......|..
T Consensus 22 i~gre~vI~lll~aala--------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHHHcc--------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 89999999988887743 248999999999999999999998753 33333322 1111222211
Q ss_pred HHHH--HHHHHHHHhh---CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecC
Q 009911 316 ERMV--RCLFDLARAY---APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATN 390 (522)
Q Consensus 316 e~~l--~~~f~~a~~~---~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn 390 (522)
-... ..-|...... ...+||+|||.. ....+++.||..|+.-.-..+.........+++++||
T Consensus 88 i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r------------asp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 88 IQALKDEGRYQRLTSGYLPEAEIVFLDEIWK------------AGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HhhhhhcCchhhhcCCccccccEEeeccccc------------CCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 0000 1112111110 234999999954 4467889999999643322221112222244555556
Q ss_pred CCC---CccHHHHhhcccccccCCCC-HHHHHHHHHH
Q 009911 391 FPW---DIDEALRRRLEKRIYIPLPN-FESRKELIKI 423 (522)
Q Consensus 391 ~p~---~ld~aL~rRf~~~i~i~~Pd-~~~R~~Ilk~ 423 (522)
... ...+++..||...+.+|.|+ .++..+|+..
T Consensus 156 ~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 156 ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 432 23469999998899999997 4666777765
No 162
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.7e-11 Score=121.39 Aligned_cols=98 Identities=30% Similarity=0.503 Sum_probs=77.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh-hhhhchh-HHHHHHHHHHHH----hhCCcEEEEechhhhhhc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA-SKWRGES-ERMVRCLFDLAR----AYAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~-~~~~g~~-e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~ 345 (522)
.+|||.||+|+|||+||+.+|+.+++||..++|++|. ..|.|+. |..|..++..|. ..+..|+||||+|+|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4799999999999999999999999999999999987 4677774 666777776654 345689999999999844
Q ss_pred cCC-C-CchhhHHHHHHHHHHHhhhc
Q 009911 346 RGA-S-GEHESSRRVKSELLVQVDGV 369 (522)
Q Consensus 346 ~~~-~-~~~~~~~~~~~~Ll~~ld~~ 369 (522)
... . ..+.....++..||+.+++.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 321 1 12334567889999999974
No 163
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.26 E-value=2.7e-11 Score=125.02 Aligned_cols=160 Identities=27% Similarity=0.316 Sum_probs=106.1
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh--hhhchhHH
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS--KWRGESER 317 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~--~~~g~~e~ 317 (522)
++|.++++..+..++.. ..++||.||||||||+||+.+|..++.+|+.+.++.... ...|...-
T Consensus 26 ~~g~~~~~~~~l~a~~~--------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 26 VVGDEEVIELALLALLA--------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeccHHHHHHHHHHHHc--------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhH
Confidence 78888888877776653 248999999999999999999999999999999874322 22222211
Q ss_pred HHH----HHHHHHH--hhCC--cEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-CCCC-CCCcceEEEEe
Q 009911 318 MVR----CLFDLAR--AYAP--STIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-GTNE-DGSRKIVMVLA 387 (522)
Q Consensus 318 ~l~----~~f~~a~--~~~p--~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-~~~~-~~~~~~VivIa 387 (522)
... ..|.... .... +|+|+|||+.. ...+++.|+..|+..... .... ......++||+
T Consensus 92 ~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 92 AALLLEPGEFRFVPGPLFAAVRVILLLDEINRA------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hhhhccCCeEEEecCCcccccceEEEEeccccC------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 110 0010000 0011 49999999653 356788898888863221 1111 22345588888
Q ss_pred ecC-----CCCCccHHHHhhcccccccCCC-CHHHHHHHHHHHH
Q 009911 388 ATN-----FPWDIDEALRRRLEKRIYIPLP-NFESRKELIKINL 425 (522)
Q Consensus 388 ttn-----~p~~ld~aL~rRf~~~i~i~~P-d~~~R~~Ilk~~l 425 (522)
|.| ....+++++++||...++++.| +..+...++....
T Consensus 160 T~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred ccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 889 3457899999999889999999 5555555554433
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=3e-10 Score=116.67 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=104.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeehhhhhhhhhchhHHHHHHHH
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTT------------------------FFNVSSATLASKWRGESERMVRCLF 323 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~~------------------------~i~v~~~~l~~~~~g~~e~~l~~~f 323 (522)
++.++.+||+||+|+|||++|+++|+.+.+. ++.+....- ++ .-.-..++.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHH
Confidence 4556789999999999999999999998542 222222100 00 01123355554
Q ss_pred HHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHH
Q 009911 324 DLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEAL 399 (522)
Q Consensus 324 ~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL 399 (522)
+.+.. ....|++||++|.|. ....+.||+.+++.... +++|.+|+.+..+.+.+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEPp~~----------~~fiL~t~~~~~ll~TI 153 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEPSGD----------TVLLLISHQPSRLLPTI 153 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCCCCC----------eEEEEEECChhhCcHHH
Confidence 44432 235689999998875 34568999999975532 78889999999999999
Q ss_pred HhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcH
Q 009911 400 RRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSG 448 (522)
Q Consensus 400 ~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~ 448 (522)
++||. .+.|+.|+.++....+...... ..+.+...++....|-.+
T Consensus 154 ~SRc~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 154 KSRCQ-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred Hhhce-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 99995 6999999999888877754311 123334566777777443
No 165
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.25 E-value=8.4e-11 Score=111.38 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=97.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeehhhhhhhhhchhHHHHHHHHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTT------------------------FFNVSSATLASKWRGESERMVRCLFD 324 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~------------------------~i~v~~~~l~~~~~g~~e~~l~~~f~ 324 (522)
+.++.+||+||+|+|||++|+.+++.+... +..+.... .. ..-..++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHH
Confidence 344689999999999999999999998542 22221110 00 11233445555
Q ss_pred HHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHH
Q 009911 325 LARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALR 400 (522)
Q Consensus 325 ~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~ 400 (522)
.+.. ....||+|||+|.+.. ..++.|+..|+..... +++|.+|+.+..+.++++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~~~~----------~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEPPPN----------TLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCCCCC----------eEEEEEECChHhChHHHH
Confidence 4443 2356999999988753 2456788888764322 456666777789999999
Q ss_pred hhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCC
Q 009911 401 RRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDG 445 (522)
Q Consensus 401 rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~G 445 (522)
+|+. .+.++.|+.++...+++.. .+. +..+..|+..+.|
T Consensus 145 sr~~-~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 145 SRCQ-VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred hhcE-EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 9994 8999999999988888765 222 3346667766665
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.1e-10 Score=129.41 Aligned_cols=212 Identities=21% Similarity=0.268 Sum_probs=145.1
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhhhhhh-----
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSATLASK----- 310 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~l~~~----- 310 (522)
.|+|++++...+..++..- .--.....+|..++||.||+|+|||.||+++|..+. ..++.+++++...+
T Consensus 492 rViGQd~AV~avs~aIrra---RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRA---RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred ceeChHHHHHHHHHHHHHH---hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHH
Confidence 4788999998888887531 111122346666899999999999999999999996 78999999887643
Q ss_pred -------hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC-CCCCCCCCCcce
Q 009911 311 -------WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN-NTGTNEDGSRKI 382 (522)
Q Consensus 311 -------~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~-~~~~~~~~~~~~ 382 (522)
|.|..+ =..+-+..+....+||++|||++- ...+++.||..||.-. ..+.+...+-.+
T Consensus 569 LIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrN 634 (786)
T COG0542 569 LIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRN 634 (786)
T ss_pred HhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEecce
Confidence 333332 122334455566789999999763 4568899999998433 222233445577
Q ss_pred EEEEeecCCCC----------------------------CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC-----
Q 009911 383 VMVLAATNFPW----------------------------DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE----- 429 (522)
Q Consensus 383 VivIattn~p~----------------------------~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~----- 429 (522)
++||+|||--. .+.|.|+.|++..|.|...+.+...+|+...+..+.
T Consensus 635 tiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~ 714 (786)
T COG0542 635 TIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAE 714 (786)
T ss_pred eEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999998421 123677789999999999999999999988775421
Q ss_pred --CC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHh
Q 009911 430 --VS---KDVDIDEVARRTD--GYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 430 --l~---~~~dl~~LA~~t~--Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
+. .+.-.+.|+...- .|-++-|..++++-....+-..+
T Consensus 715 ~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 715 RGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred CCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 11 1111344555443 46677788888766666655543
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.4e-10 Score=117.84 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=105.7
Q ss_pred CcccccC-cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 009911 236 RWDDVAG-LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT---------------- 298 (522)
Q Consensus 236 ~~~di~G-~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~---------------- 298 (522)
.|+.|+| ++.+++.|...+.. ++.++.+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4778888 88899999887743 3455788999999999999999999987432
Q ss_pred --------EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHh
Q 009911 299 --------FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 299 --------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~l 366 (522)
+..+... +... .-..++.+.+.+. .....|++|||+|.+. ....+.||+.|
T Consensus 72 ~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~L 134 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFL 134 (329)
T ss_pred HhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHh
Confidence 2222111 0000 1123444443332 1234699999998774 33568899999
Q ss_pred hhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHH
Q 009911 367 DGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKI 423 (522)
Q Consensus 367 d~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~ 423 (522)
++.... +++|.+|+.+..+.+++++|| ..+.|+.|+.++....++.
T Consensus 135 EEPp~~----------~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EEPSGG----------TTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCCCCC----------ceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 976543 667778888899999999999 5899999999887777753
No 168
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.23 E-value=5e-11 Score=122.05 Aligned_cols=150 Identities=25% Similarity=0.291 Sum_probs=105.8
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG--------------------- 296 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg--------------------- 296 (522)
++++|.+.+...+..+.... ++.++.+||+||||+|||++|.++|+.+.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 35778888888887776531 12223699999999999999999999997
Q ss_pred ---CcEEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhc
Q 009911 297 ---TTFFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGV 369 (522)
Q Consensus 297 ---~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~ 369 (522)
..|+++++++....- .....++.+-+.... ....||+|||+|.|.. ...+.|++.++..
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEep 136 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEEP 136 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhccC
Confidence 467778777643311 122334444333322 2346999999999864 4568888888865
Q ss_pred CCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHH
Q 009911 370 NNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIK 422 (522)
Q Consensus 370 ~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk 422 (522)
... .++|.+||.++.+-+.+++||. .+.|+.|+........+
T Consensus 137 ~~~----------~~~il~~n~~~~il~tI~SRc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 PKN----------TRFILITNDPSKILPTIRSRCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCC----------eEEEEEcCChhhccchhhhcce-eeecCCchHHHHHHHhh
Confidence 543 7889999999999999999994 78887766555444433
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=4.1e-10 Score=129.38 Aligned_cols=210 Identities=20% Similarity=0.275 Sum_probs=132.7
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhcc---CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGI---RRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW 311 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~---~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~ 311 (522)
+.|+|++.+.+.|...+... ..+. .+|...+||+||+|||||++|++||..+ +.+|+.++++.+....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRS------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHH------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 35889999988888887531 1111 2333478999999999999999999987 4578889887764321
Q ss_pred -----h-------chhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-CCCCCC
Q 009911 312 -----R-------GESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-GTNEDG 378 (522)
Q Consensus 312 -----~-------g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-~~~~~~ 378 (522)
. |..+ -..+....+....+|||||||+.+. ..+++.|+..++.-.-. ......
T Consensus 642 ~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka~------------~~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKAH------------PDVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhCC------------HHHHHHHHHHHhhCceecCCceEE
Confidence 1 1111 0112222233344899999998653 34677788887642211 111111
Q ss_pred CcceEEEEeecCCCC-------------------------CccHHHHhhcccccccCCCCHHHHHHHHHHHHccC-----
Q 009911 379 SRKIVMVLAATNFPW-------------------------DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTV----- 428 (522)
Q Consensus 379 ~~~~VivIattn~p~-------------------------~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~----- 428 (522)
+..+.+||+|||... .+.++|+.|++..+.|.+++.++...|++..+..+
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~ 787 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLE 787 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 234467889998731 23468889998889999999999999988777542
Q ss_pred --CCCCccc---HHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 429 --EVSKDVD---IDEVARRT--DGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 429 --~l~~~~d---l~~LA~~t--~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
.+.-.++ +..|+... .-|-++.|..+++.-....+.+.+
T Consensus 788 ~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 788 ERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred hCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 1211222 34455421 123467888888877666665543
No 170
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.21 E-value=2.2e-10 Score=126.73 Aligned_cols=52 Identities=37% Similarity=0.538 Sum_probs=44.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
|..-|++++|++++++.|..++... ++++|+||||||||++++++++.++..
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~~--------------~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQK--------------RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHcC--------------CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4556889999999999999887642 389999999999999999999999764
No 171
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.21 E-value=6.4e-11 Score=110.53 Aligned_cols=121 Identities=25% Similarity=0.328 Sum_probs=83.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEeehhhhhhhhhchhHHHHHHHHHHH----HhhCCcEEEEechhh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGT----TFFNVSSATLASKWRGESERMVRCLFDLA----RAYAPSTIFIDEIDS 341 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~----~~i~v~~~~l~~~~~g~~e~~l~~~f~~a----~~~~p~VL~IDEiD~ 341 (522)
|..++||+||+|||||.||+++|..+.. +++.++++.+.. .+..+..+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4458999999999999999999999996 999999998876 111112222222111 111224999999999
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEEEeecCCCC
Q 009911 342 LCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKIVMVLAATNFPW 393 (522)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~VivIattn~p~ 393 (522)
+... .....+.....+++.||..|++-.-.. .....+..+++||+|+|.-.
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9875 344556666788999999998643321 11233556699999999754
No 172
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=5e-10 Score=128.98 Aligned_cols=213 Identities=22% Similarity=0.276 Sum_probs=139.5
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh----
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK---- 310 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~---- 310 (522)
..|+|++.+.+.+...+..... -.....+|...+||+||+|||||++|+++|..+ +.+++.++++.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~---gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc---cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 3589999999999888764210 001122455679999999999999999999988 468888888765331
Q ss_pred --------hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-CCCCCCCcc
Q 009911 311 --------WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-GTNEDGSRK 381 (522)
Q Consensus 311 --------~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-~~~~~~~~~ 381 (522)
|.|..+ ...+....+....+||||||||.+. ..+++.|+..|+.-.-. ......+-.
T Consensus 642 ~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~------------~~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 642 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAH------------PDVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred HhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCC------------HHHHHHHHHHHhcCceecCCCeEEecC
Confidence 111111 1123333444455799999998653 45678888888643211 111112234
Q ss_pred eEEEEeecCCCCC-------------------------ccHHHHhhcccccccCCCCHHHHHHHHHHHHccC-------C
Q 009911 382 IVMVLAATNFPWD-------------------------IDEALRRRLEKRIYIPLPNFESRKELIKINLKTV-------E 429 (522)
Q Consensus 382 ~VivIattn~p~~-------------------------ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~-------~ 429 (522)
+++||+|||.... +.+.|+.|++..+.|.+++.+....|+...+..+ .
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~ 787 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERK 787 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5789999997321 2356777998899999999999999988766421 1
Q ss_pred CC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHh
Q 009911 430 VS---KDVDIDEVARRTD--GYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 430 l~---~~~dl~~LA~~t~--Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
+. ++..+..|+...- .|..+.|.++++......+.+.+
T Consensus 788 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 788 ITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred CeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 2222556777522 46788999999888877776654
No 173
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.19 E-value=1.4e-09 Score=108.70 Aligned_cols=242 Identities=20% Similarity=0.270 Sum_probs=142.1
Q ss_pred cCCCChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHH
Q 009911 213 YEGPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 213 ~~~~~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA 292 (522)
+.+..+...+.+...-.+...-+.=+.+||+..+++.|..+-.+ +.+| ...+- .++||+|++|.|||++++.++
T Consensus 9 ~~HL~~~~~~~~~l~~~eRI~~i~~~rWIgY~~A~~~L~~L~~L-l~~P---~~~Rm--p~lLivG~snnGKT~Ii~rF~ 82 (302)
T PF05621_consen 9 YSHLHPDARELLQLSDEERIAYIRADRWIGYPRAKEALDRLEEL-LEYP---KRHRM--PNLLIVGDSNNGKTMIIERFR 82 (302)
T ss_pred hhhcCHHHHHHHhcCHHHHHHHHhcCCeecCHHHHHHHHHHHHH-HhCC---cccCC--CceEEecCCCCcHHHHHHHHH
Confidence 34455555555544433333334445588877776666554432 1111 11222 489999999999999999999
Q ss_pred HHhC---------CcEEEeehhhhhh--------------hh--hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC
Q 009911 293 TECG---------TTFFNVSSATLAS--------------KW--RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG 347 (522)
Q Consensus 293 ~~lg---------~~~i~v~~~~l~~--------------~~--~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~ 347 (522)
.... ++++.+.+..-.+ .+ .....+.-..+....+..++.+|+|||++.++...
T Consensus 83 ~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs- 161 (302)
T PF05621_consen 83 RLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS- 161 (302)
T ss_pred HHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-
Confidence 7763 3566665421110 01 11123334455667778888999999999986432
Q ss_pred CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC--CCccHHHHhhcccccccCCCC-HHHHHHHHHHH
Q 009911 348 ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP--WDIDEALRRRLEKRIYIPLPN-FESRKELIKIN 424 (522)
Q Consensus 348 ~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p--~~ld~aL~rRf~~~i~i~~Pd-~~~R~~Ilk~~ 424 (522)
.+-+.++++.+..+.+.-. -.++.++|-.-. -.-|+.+.+||. .+.+|.=. .++...++..+
T Consensus 162 --------~~~qr~~Ln~LK~L~NeL~------ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~~d~ef~~LL~s~ 226 (302)
T PF05621_consen 162 --------YRKQREFLNALKFLGNELQ------IPIVGVGTREAYRALRTDPQLASRFE-PFELPRWELDEEFRRLLASF 226 (302)
T ss_pred --------HHHHHHHHHHHHHHhhccC------CCeEEeccHHHHHHhccCHHHHhccC-CccCCCCCCCcHHHHHHHHH
Confidence 1223444455544433321 113444443222 244688999995 66666533 34556677766
Q ss_pred HccCCCCC--ccc---H-HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhh
Q 009911 425 LKTVEVSK--DVD---I-DEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKN 477 (522)
Q Consensus 425 l~~~~l~~--~~d---l-~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~ 477 (522)
-..+.+.. ++. + ..|-..++|..| +|..+++.|+..|++...+.++.+.+..
T Consensus 227 e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 227 ERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 65555432 222 2 456678888765 6999999999999998866555554433
No 174
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.19 E-value=8.1e-10 Score=107.37 Aligned_cols=178 Identities=18% Similarity=0.250 Sum_probs=129.8
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CC---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-GT--------- 297 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-g~--------- 297 (522)
|+++|.+-+++.+.+.++....|+.+... .-..++|+|||+|+||-|.+.++-+++ |.
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 67889999999999999999999887641 111399999999999999999999888 21
Q ss_pred -------------------cEEEeehhhhhhhhhchh-HHHHHHHHHHHHhhC---------CcEEEEechhhhhhccCC
Q 009911 298 -------------------TFFNVSSATLASKWRGES-ERMVRCLFDLARAYA---------PSTIFIDEIDSLCNARGA 348 (522)
Q Consensus 298 -------------------~~i~v~~~~l~~~~~g~~-e~~l~~~f~~a~~~~---------p~VL~IDEiD~l~~~~~~ 348 (522)
..+++++++ .|.. .-.++.++......+ -.|++|.|+|.|.
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT----- 140 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT----- 140 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----
Confidence 112333332 2322 233455554433222 2389999998875
Q ss_pred CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccC
Q 009911 349 SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTV 428 (522)
Q Consensus 349 ~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~ 428 (522)
+..+..|-..|+..... +-+|..+|....+-+++++|| ..|.+|.|+.++...++...+...
T Consensus 141 -------~dAQ~aLRRTMEkYs~~----------~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 141 -------RDAQHALRRTMEKYSSN----------CRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred -------HHHHHHHHHHHHHHhcC----------ceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHh
Confidence 44567777777766544 568888899999999999999 699999999999999999888766
Q ss_pred CCCCc-ccHHHHHHHcCC
Q 009911 429 EVSKD-VDIDEVARRTDG 445 (522)
Q Consensus 429 ~l~~~-~dl~~LA~~t~G 445 (522)
.+.-. .-+..+|+.++|
T Consensus 203 ~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 203 GLQLPKELLKRIAEKSNR 220 (351)
T ss_pred cccCcHHHHHHHHHHhcc
Confidence 55433 335678887776
No 175
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.17 E-value=3.2e-11 Score=108.35 Aligned_cols=118 Identities=24% Similarity=0.304 Sum_probs=72.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh--hhhchhHHH-HH-----HHHHHHHhhCCcEEEEechhhhhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS--KWRGESERM-VR-----CLFDLARAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~--~~~g~~e~~-l~-----~~f~~a~~~~p~VL~IDEiD~l~~ 344 (522)
+|||+||||||||+||+.+|..++.+++.+.++.... .+.|..... .. ..+..+ ...+.+||||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccc-ccceeEEEECCcccC--
Confidence 5899999999999999999999999998888765321 111111000 00 000000 014689999999754
Q ss_pred ccCCCCchhhHHHHHHHHHHHhhhcCCC----CCCCCCC-----cceEEEEeecCCCC----CccHHHHhhc
Q 009911 345 ARGASGEHESSRRVKSELLVQVDGVNNT----GTNEDGS-----RKIVMVLAATNFPW----DIDEALRRRL 403 (522)
Q Consensus 345 ~~~~~~~~~~~~~~~~~Ll~~ld~~~~~----~~~~~~~-----~~~VivIattn~p~----~ld~aL~rRf 403 (522)
...++..|+..++.-... ....... ...+.||+|+|... .++++|++||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 245666777777643211 1000001 11489999999988 9999999998
No 176
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.16 E-value=5e-10 Score=117.76 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=91.8
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEeehh----
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT-------FFNVSSA---- 305 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~-------~i~v~~~---- 305 (522)
++++.+.++..+.+...+.. .++++|+||||||||++|+.+|..++.. ++.++..
T Consensus 174 l~d~~i~e~~le~l~~~L~~--------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 55677777777777665542 3599999999999999999999988531 2233221
Q ss_pred hhhhhhhch--h----HHHHHHHHHHHHh--hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC-------
Q 009911 306 TLASKWRGE--S----ERMVRCLFDLARA--YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN------- 370 (522)
Q Consensus 306 ~l~~~~~g~--~----e~~l~~~f~~a~~--~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~------- 370 (522)
++...+.-. . ...+..+...|.. ..|.+||||||+..- ..++..+++..|+.-.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhccccccccccce
Confidence 222222100 0 1123334455554 357899999997532 2344455555555211
Q ss_pred -----CCCCCCCCCcceEEEEeecCCCC----CccHHHHhhcccccccCC
Q 009911 371 -----NTGTNEDGSRKIVMVLAATNFPW----DIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 371 -----~~~~~~~~~~~~VivIattn~p~----~ld~aL~rRf~~~i~i~~ 411 (522)
........-+.++.||||+|..+ .+|.||+|||. .|.+..
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 00001122456799999999886 79999999995 666653
No 177
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=1.3e-09 Score=108.86 Aligned_cols=192 Identities=18% Similarity=0.267 Sum_probs=115.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-cEE--E-e----ehhhhh----hhh----hchh-HHHHHHHH----HHHHhhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT-TFF--N-V----SSATLA----SKW----RGES-ERMVRCLF----DLARAYA 330 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~-~~i--~-v----~~~~l~----~~~----~g~~-e~~l~~~f----~~a~~~~ 330 (522)
..++|+||+|+|||++++.++..+.. .++ . + +...+. ..+ .+.. ...+..+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 36889999999999999999999752 222 1 1 111111 111 1111 11122222 2233445
Q ss_pred CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecC--CCCCc----cHHHHhhcc
Q 009911 331 PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATN--FPWDI----DEALRRRLE 404 (522)
Q Consensus 331 p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn--~p~~l----d~aL~rRf~ 404 (522)
+.+|+|||+|.+... ....| ..+-..... ....+.|+.+.. ....+ ...+.+|+.
T Consensus 124 ~~vliiDe~~~l~~~------------~~~~l-~~l~~~~~~------~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~ 184 (269)
T TIGR03015 124 RALLVVDEAQNLTPE------------LLEEL-RMLSNFQTD------NAKLLQIFLVGQPEFRETLQSPQLQQLRQRII 184 (269)
T ss_pred CeEEEEECcccCCHH------------HHHHH-HHHhCcccC------CCCeEEEEEcCCHHHHHHHcCchhHHHHhhee
Confidence 679999999876321 11222 222221111 112233333322 11111 235777887
Q ss_pred cccccCCCCHHHHHHHHHHHHccCCC-----CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhcc
Q 009911 405 KRIYIPLPNFESRKELIKINLKTVEV-----SKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMS 479 (522)
Q Consensus 405 ~~i~i~~Pd~~~R~~Ilk~~l~~~~l-----~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~ 479 (522)
..+.++..+.++...++...+..... -.+..+..|++.+.|+. +.|..+|..+...+..+.
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~------------- 250 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE------------- 250 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC-------------
Confidence 88999999999999999887754321 23345788999999985 459999999988877764
Q ss_pred ccccCCCCccHHHHHHHHHhhC
Q 009911 480 KDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 480 ~~~~~~~~lt~~df~~AL~~~~ 501 (522)
...|+.+++..++..++
T Consensus 251 -----~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 -----KREIGGEEVREVIAEID 267 (269)
T ss_pred -----CCCCCHHHHHHHHHHhh
Confidence 45799999999988765
No 178
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=8.6e-10 Score=121.54 Aligned_cols=204 Identities=13% Similarity=0.137 Sum_probs=120.6
Q ss_pred hhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-eeh
Q 009911 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN-VSS 304 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~-v~~ 304 (522)
..|.++|.+..++||+|++...+.|..++..... ...+.+-++|+||+|||||++++.+|++++..+++ ++.
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 3588899999999999999999998887653211 01233459999999999999999999999876644 221
Q ss_pred hhh---hhhh------------hchhHHHHHHHHHHHHh----------hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 305 ATL---ASKW------------RGESERMVRCLFDLARA----------YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 305 ~~l---~~~~------------~g~~e~~l~~~f~~a~~----------~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
... ...| .......+..++..+.. ....|||||||+.++.. ... .+
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~-~l 215 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTR-AL 215 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHH-HH
Confidence 110 0000 00112233444444431 24569999999987632 122 22
Q ss_pred HHHHH--HhhhcCCCCCCCCCCcceEEEEeecCCCC--------------CccHHHHh--hcccccccCCCCHHHHHHHH
Q 009911 360 SELLV--QVDGVNNTGTNEDGSRKIVMVLAATNFPW--------------DIDEALRR--RLEKRIYIPLPNFESRKELI 421 (522)
Q Consensus 360 ~~Ll~--~ld~~~~~~~~~~~~~~~VivIattn~p~--------------~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Il 421 (522)
..+|. .++ .. ...+|+++|..+. .|.+++++ |+ ..|.|.+.+.......|
T Consensus 216 q~lLr~~~~e----~~-------~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L 283 (637)
T TIGR00602 216 HEILRWKYVS----IG-------RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFL 283 (637)
T ss_pred HHHHHHHhhc----CC-------CceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHH
Confidence 33333 221 11 1133444442221 13478886 55 47899999999877777
Q ss_pred HHHHccCC--CC------CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009911 422 KINLKTVE--VS------KDVDIDEVARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 422 k~~l~~~~--l~------~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
+..+.... .. ....+..|+... .+||+.++..-.+.
T Consensus 284 ~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 284 NRIVTIEAKKNGEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFS 327 (637)
T ss_pred HHHHHhhhhccccccccCCHHHHHHHHHhC----CChHHHHHHHHHHH
Confidence 77665421 11 112455666644 45888877644443
No 179
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.14 E-value=7.3e-10 Score=120.73 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=100.9
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe----ehhhhhhhhhc
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNV----SSATLASKWRG 313 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v----~~~~l~~~~~g 313 (522)
+|.|++.+|..|.-.+..-- .+....+.. +...+|||+|+||||||++|+++++......+.. ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~-~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV-HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC-ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 48999999888877664311 011111111 2224799999999999999999999876433322 22112111000
Q ss_pred h---hHHHHH-HHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC---CCCCCCCCCcceEEEE
Q 009911 314 E---SERMVR-CLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN---NTGTNEDGSRKIVMVL 386 (522)
Q Consensus 314 ~---~e~~l~-~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~---~~~~~~~~~~~~VivI 386 (522)
. .+..++ ..+.. ...++|||||+|.+. ...+..|+..|+.-. ...+....-...+.||
T Consensus 283 ~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 283 DPETREFTLEGGALVL---ADNGVCCIDEFDKMD------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred ccCcceEEecCccEEe---cCCCEEEEechhhCC------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 0 000000 00111 124799999998764 334566777775322 1101000112347899
Q ss_pred eecCCCC-------------CccHHHHhhccccc-ccCCCCHHHHHHHHHHHHc
Q 009911 387 AATNFPW-------------DIDEALRRRLEKRI-YIPLPNFESRKELIKINLK 426 (522)
Q Consensus 387 attn~p~-------------~ld~aL~rRf~~~i-~i~~Pd~~~R~~Ilk~~l~ 426 (522)
||+|..+ .|++++++||+..+ .+..|+.+...+|.++.+.
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999652 68899999997654 4578999999999987653
No 180
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.11 E-value=6.2e-10 Score=97.85 Aligned_cols=127 Identities=32% Similarity=0.420 Sum_probs=79.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeehhhhhhhh--------------hchhHHHHHHHHHHHHhhCCcEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT---FFNVSSATLASKW--------------RGESERMVRCLFDLARAYAPSTI 334 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~---~i~v~~~~l~~~~--------------~g~~e~~l~~~f~~a~~~~p~VL 334 (522)
..++|+||||||||++++.+|..+... ++.+++....... .......+..++..++...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 589999999999999999999999875 8888776543221 12334556778888888778999
Q ss_pred EEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC-CCCccHHHHhhcccccccCCC
Q 009911 335 FIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF-PWDIDEALRRRLEKRIYIPLP 412 (522)
Q Consensus 335 ~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~-p~~ld~aL~rRf~~~i~i~~P 412 (522)
||||++.+..... .................. .....+|+++|. ....+..++.|++..+.+..+
T Consensus 83 iiDei~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-----EALLLLLEELRLLLLLKS---------EKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-----HHHHHhhhhhHHHHHHHh---------cCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999988764321 000000000000011111 122577778775 455566666688777766544
No 181
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.2e-09 Score=112.20 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=108.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh-hhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA-TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG 347 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~-~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~ 347 (522)
.+-.+|||+||||+|||.||-.+|...+.||+.+-.. ++.+-.....-..+..+|+.|....-+||++|+|+.|..--
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v- 614 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV- 614 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc-
Confidence 4456899999999999999999999999999987554 44332111223457889999999888999999999997542
Q ss_pred CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc-HHHHhhcccccccCCCCH-HHHHHHHH
Q 009911 348 ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID-EALRRRLEKRIYIPLPNF-ESRKELIK 422 (522)
Q Consensus 348 ~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld-~aL~rRf~~~i~i~~Pd~-~~R~~Ilk 422 (522)
+-...+++.++..|+..+......+ ...+|++||....-|. -.+...|+-.+.+|..+. ++..+++.
T Consensus 615 -pIGPRfSN~vlQaL~VllK~~ppkg-------~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 615 -PIGPRFSNLVLQALLVLLKKQPPKG-------RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred -ccCchhhHHHHHHHHHHhccCCCCC-------ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHH
Confidence 2335678888899998888766543 3478888888765444 356678999999988765 55555554
No 182
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.08 E-value=8.5e-10 Score=102.12 Aligned_cols=134 Identities=24% Similarity=0.274 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------c
Q 009911 242 GLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT-----------------------T 298 (522)
Q Consensus 242 G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~-----------------------~ 298 (522)
|++++.+.|...+.. .+.++.+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 678888888887753 344578999999999999999999998833 2
Q ss_pred EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCC
Q 009911 299 FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGT 374 (522)
Q Consensus 299 ~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~ 374 (522)
++.++...... .-.-..++.+...... ....|++|||+|.|. ....+.||+.|++....
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEepp~~-- 132 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEPPEN-- 132 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHSTTTT--
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCCCCC--
Confidence 23332221100 0112334444444322 235699999998875 45679999999976543
Q ss_pred CCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCC
Q 009911 375 NEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLP 412 (522)
Q Consensus 375 ~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~P 412 (522)
+++|.+|+++..+.+.+++||. .+.|+..
T Consensus 133 --------~~fiL~t~~~~~il~TI~SRc~-~i~~~~l 161 (162)
T PF13177_consen 133 --------TYFILITNNPSKILPTIRSRCQ-VIRFRPL 161 (162)
T ss_dssp --------EEEEEEES-GGGS-HHHHTTSE-EEEE---
T ss_pred --------EEEEEEECChHHChHHHHhhce-EEecCCC
Confidence 8899999999999999999994 6777653
No 183
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.08 E-value=1.9e-09 Score=116.40 Aligned_cols=181 Identities=22% Similarity=0.247 Sum_probs=108.2
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC----C-------------
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG----T------------- 297 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg----~------------- 297 (522)
..|+||.|+..+++.|.-.+. ..++++|.||||||||+++++++..+. .
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 378999999999888776553 235899999999999999999997542 1
Q ss_pred -----------cEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHh
Q 009911 298 -----------TFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 298 -----------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~l 366 (522)
+|....++.......|.....-...+..| ..+||||||++.+ ...++..|+..|
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~------------~~~~~~~L~~~L 319 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF------------KRSVLDALREPI 319 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC------------CHHHHHHHHHHH
Confidence 12211111111111111000001112222 2379999999765 345667777777
Q ss_pred hhcCC---CCCCCCCCcceEEEEeecCCC-----C------------------CccHHHHhhcccccccCCCCHHHHHHH
Q 009911 367 DGVNN---TGTNEDGSRKIVMVLAATNFP-----W------------------DIDEALRRRLEKRIYIPLPNFESRKEL 420 (522)
Q Consensus 367 d~~~~---~~~~~~~~~~~VivIattn~p-----~------------------~ld~aL~rRf~~~i~i~~Pd~~~R~~I 420 (522)
+.-.. ...........+.+|+++|.. . .+...|++||+..+.++.++..+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~---- 395 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK---- 395 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH----
Confidence 64221 111111123457888888852 1 47788899999888888776542
Q ss_pred HHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 421 IKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 421 lk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
|.....|-+.++++.-|..|......|.
T Consensus 396 ------------------l~~~~~~e~s~~ir~rV~~Ar~~q~~R~ 423 (499)
T TIGR00368 396 ------------------LLSTGSGESSAEVKQRVIKAREIQNIRY 423 (499)
T ss_pred ------------------HhccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1222234566778877777766665553
No 184
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=1e-08 Score=105.75 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=101.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeehhhhhhhhhchhHHHHHHHH
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTT------------------------FFNVSSATLASKWRGESERMVRCLF 323 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~~------------------------~i~v~~~~l~~~~~g~~e~~l~~~f 323 (522)
++.++.+||+||+|+||+++|.++|..+-+. |+.+.+..- .. .-.-..++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHH
Confidence 3556899999999999999999999988431 222221100 00 01112244444
Q ss_pred HHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHH
Q 009911 324 DLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEAL 399 (522)
Q Consensus 324 ~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL 399 (522)
+.+. ...-.|++||++|.|.. ...+.||+.|++.... +++|.+|+.++.|.+.+
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~~------------~AaNaLLKtLEEPp~~----------t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLTD------------AAANALLKTLEEPPEN----------TWFFLACREPARLLATL 155 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhCH------------HHHHHHHHHhcCCCCC----------eEEEEEECChhhChHHH
Confidence 3332 23346999999998853 3558999999976543 78999999999999999
Q ss_pred HhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcH
Q 009911 400 RRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSG 448 (522)
Q Consensus 400 ~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~ 448 (522)
+|||. .+.|+.|+.++....+.... ... ..+...++..+.|-.+
T Consensus 156 rSRCq-~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 156 RSRCR-LHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred Hhccc-cccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHH
Confidence 99996 78999999888777765321 222 2234456677776443
No 185
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.05 E-value=5.1e-09 Score=115.71 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=91.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehhhhhhhhhchhHHHHHHHHHHHH---------hhCCcEEEEechh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSATLASKWRGESERMVRCLFDLAR---------AYAPSTIFIDEID 340 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~---------~~~p~VL~IDEiD 340 (522)
.+|||.|+||||||++|++++..++. +|+.+..........|... +...+.... ....+|||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 48999999999999999999998864 5888875433333333321 111110000 1123699999997
Q ss_pred hhhhccCCCCchhhHHHHHHHHHHHhhhcC---CCCCCCCCCcceEEEEeecCCCC---CccHHHHhhcccccccC-CCC
Q 009911 341 SLCNARGASGEHESSRRVKSELLVQVDGVN---NTGTNEDGSRKIVMVLAATNFPW---DIDEALRRRLEKRIYIP-LPN 413 (522)
Q Consensus 341 ~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~---~~~~~~~~~~~~VivIattn~p~---~ld~aL~rRf~~~i~i~-~Pd 413 (522)
.+. ..++..|+..|+.-. ...+........+.||+|+|..+ .+.++|+.||...+.+. .|+
T Consensus 95 rl~------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 95 LLD------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred hCC------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 764 456788888886432 10010111223478888888764 78899999998877665 457
Q ss_pred HHHHHHHHHHHH
Q 009911 414 FESRKELIKINL 425 (522)
Q Consensus 414 ~~~R~~Ilk~~l 425 (522)
.++|.+|++..+
T Consensus 163 ~~er~eil~~~~ 174 (589)
T TIGR02031 163 QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHH
Confidence 788999998765
No 186
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=7.3e-09 Score=105.92 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=91.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEeehhhhhhhhhchhHHHHHHHHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTT------------------------FFNVSSATLASKWRGESERMVRCLFD 324 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~------------------------~i~v~~~~l~~~~~g~~e~~l~~~f~ 324 (522)
+.++.+||+||+|+||+++|+++|+.+-+. |+.+.+. .++.. .-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHHH
Confidence 455799999999999999999999988441 2222111 00111 1223454444
Q ss_pred HHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHH
Q 009911 325 LARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALR 400 (522)
Q Consensus 325 ~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~ 400 (522)
.+.. ..-.|++||++|.|. ....+.||+.+++.... +++|.+|+.++.+.+.++
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEEPp~~----------~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEEPRPN----------TYFLLQADLSAALLPTIY 155 (325)
T ss_pred HHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcCCCCC----------eEEEEEECChHhCchHHH
Confidence 3332 234599999999875 34568999999976543 788889999999999999
Q ss_pred hhcccccccCCCCHHHHHHHHHHH
Q 009911 401 RRLEKRIYIPLPNFESRKELIKIN 424 (522)
Q Consensus 401 rRf~~~i~i~~Pd~~~R~~Ilk~~ 424 (522)
+||. .+.|+.|+.++..+.|...
T Consensus 156 SRC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 156 SRCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hhce-EEeCCCCCHHHHHHHHHHH
Confidence 9995 8899999998888777654
No 187
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.04 E-value=3e-09 Score=105.53 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=120.7
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------EE
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT------FF 300 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~------~i 300 (522)
.|+++|++-.++|+++.+++...+.++...+ +.| ++|+|||||||||+...+.|+.+-.+ +.
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~----------~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~l 97 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMP----------GLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLL 97 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccCC----------CCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHH
Confidence 4677888899999999999999998874321 233 99999999999999999999998653 12
Q ss_pred EeehhhhhhhhhchhHHHHHHHHHHHHh-------hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC
Q 009911 301 NVSSATLASKWRGESERMVRCLFDLARA-------YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG 373 (522)
Q Consensus 301 ~v~~~~l~~~~~g~~e~~l~~~f~~a~~-------~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~ 373 (522)
++++++-.+ .+... .--..|...+. ..+.+|++||+|.+.. ..+++|...++....
T Consensus 98 elnaSd~rg--id~vr-~qi~~fast~~~~~fst~~~fKlvILDEADaMT~------------~AQnALRRviek~t~-- 160 (360)
T KOG0990|consen 98 ELNASDDRG--IDPVR-QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR------------DAQNALRRVIEKYTA-- 160 (360)
T ss_pred HhhccCccC--CcchH-HHHHHHHhhccceeccccCceeEEEecchhHhhH------------HHHHHHHHHHHHhcc--
Confidence 222222111 11111 11233444442 2467999999998763 345566555554432
Q ss_pred CCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCccc-HHHHHHHcCCCcHHHHH
Q 009911 374 TNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVD-IDEVARRTDGYSGDDLT 452 (522)
Q Consensus 374 ~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~d-l~~LA~~t~Gys~~dI~ 452 (522)
++-|+..+|.+..+.+++++||. .+.+...+...-...+.+.+....+....+ ...++.. +-+|++
T Consensus 161 --------n~rF~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr 227 (360)
T KOG0990|consen 161 --------NTRFATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMR 227 (360)
T ss_pred --------ceEEEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHH
Confidence 26677889999999999999997 566666666666666666665443332211 2233332 344666
Q ss_pred HHHHH
Q 009911 453 NVCRD 457 (522)
Q Consensus 453 ~lv~~ 457 (522)
.+++.
T Consensus 228 ~a~n~ 232 (360)
T KOG0990|consen 228 VALNY 232 (360)
T ss_pred HHHHH
Confidence 55553
No 188
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.04 E-value=5.9e-09 Score=107.52 Aligned_cols=168 Identities=22% Similarity=0.256 Sum_probs=107.5
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh------hh--
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS------AT-- 306 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~------~~-- 306 (522)
..|.-++|++..|..|....+.|. ..++||.|+.||||||++|+||..|.---+...| .+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~------------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ------------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc------------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 346679999999998877665542 2489999999999999999999998422111111 00
Q ss_pred -----hhhh-------------------hhchhHH-H-----HHHHHH----------HHHhhCCcEEEEechhhhhhcc
Q 009911 307 -----LASK-------------------WRGESER-M-----VRCLFD----------LARAYAPSTIFIDEIDSLCNAR 346 (522)
Q Consensus 307 -----l~~~-------------------~~g~~e~-~-----l~~~f~----------~a~~~~p~VL~IDEiD~l~~~~ 346 (522)
...+ -.+.++. . +..+.+ .++.+ ..||||||+..|.
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~--- 157 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD--- 157 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc---
Confidence 0000 0111222 1 111111 11122 3699999996653
Q ss_pred CCCCchhhHHHHHHHHHHHhhhcCC---CCCCCCCCcceEEEEeecCCC-CCccHHHHhhcccccccCCC-CHHHHHHHH
Q 009911 347 GASGEHESSRRVKSELLVQVDGVNN---TGTNEDGSRKIVMVLAATNFP-WDIDEALRRRLEKRIYIPLP-NFESRKELI 421 (522)
Q Consensus 347 ~~~~~~~~~~~~~~~Ll~~ld~~~~---~~~~~~~~~~~VivIattn~p-~~ld~aL~rRf~~~i~i~~P-d~~~R~~Il 421 (522)
..+++.||..+..-.+ ..+........+++|+|+|.- .+|-+.|+.||...+.+..| +.++|.+|+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHH
Confidence 4577888877764211 111111234558899999876 58889999999999988665 678999999
Q ss_pred HHHHcc
Q 009911 422 KINLKT 427 (522)
Q Consensus 422 k~~l~~ 427 (522)
+..+.-
T Consensus 229 ~r~~~f 234 (423)
T COG1239 229 RRRLAF 234 (423)
T ss_pred HHHHHh
Confidence 876643
No 189
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.03 E-value=8.4e-09 Score=105.08 Aligned_cols=64 Identities=33% Similarity=0.505 Sum_probs=45.4
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEeehhhh
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG--TTFFNVSSATL 307 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg--~~~i~v~~~~l 307 (522)
.+.++|+.++++.+--.+.+ .+......+++||.||||||||.||-++|+++| +||+.++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------Ik~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------IKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------HHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHHH-------HhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 34699999999987766542 334445568999999999999999999999997 67766665544
No 190
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.02 E-value=1.4e-10 Score=101.59 Aligned_cols=120 Identities=27% Similarity=0.263 Sum_probs=63.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh-hhh-hhhhchhHHHH-HHHHHHHH-hhCCcEEEEechhhhhhccCC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA-TLA-SKWRGESERMV-RCLFDLAR-AYAPSTIFIDEIDSLCNARGA 348 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~-~l~-~~~~g~~e~~l-~~~f~~a~-~~~p~VL~IDEiD~l~~~~~~ 348 (522)
+|||+|+||+|||++|+++|+.++..|..|.++ ++. +...|..--.. ...|...+ -.-..|+++|||.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiN-------- 72 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEIN-------- 72 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGG--------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccc--------
Confidence 589999999999999999999999999888764 221 22222110000 00000000 0002599999994
Q ss_pred CCchhhHHHHHHHHHHHhhhcCCCCCC-CCCCcceEEEEeecCCCC-----CccHHHHhhcc
Q 009911 349 SGEHESSRRVKSELLVQVDGVNNTGTN-EDGSRKIVMVLAATNFPW-----DIDEALRRRLE 404 (522)
Q Consensus 349 ~~~~~~~~~~~~~Ll~~ld~~~~~~~~-~~~~~~~VivIattn~p~-----~ld~aL~rRf~ 404 (522)
....++++.||..|.+..-.-.. .-.-.+.++||||-|..+ .|++++++||-
T Consensus 73 ----rappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 73 ----RAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ----GS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ----cCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 45677889999999865432110 011223478999999764 78899999983
No 191
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=2.8e-08 Score=102.37 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=92.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-------------------------EEeehhhhhh-------------
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTF-------------------------FNVSSATLAS------------- 309 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~-------------------------i~v~~~~l~~------------- 309 (522)
++.++++||+||+|+||+++|+++|+.+.+.. +.+.+.....
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 35568999999999999999999999985532 1121110000
Q ss_pred -hhhc---------hhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCC
Q 009911 310 -KWRG---------ESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTN 375 (522)
Q Consensus 310 -~~~g---------~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~ 375 (522)
.-.| -.-..++.+.+.+.. ..-.|++||++|.|. ....+.||+.+++....
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~--- 162 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEEPPPG--- 162 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcCCCcC---
Confidence 0000 011234444433321 223599999999875 33558999999965543
Q ss_pred CCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHH
Q 009911 376 EDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKI 423 (522)
Q Consensus 376 ~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~ 423 (522)
+++|.+|++++.|.+.++||| ..+.|+.|+.++..+.|..
T Consensus 163 -------t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 163 -------TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -------cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 789999999999999999999 5899999999988888765
No 192
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.2e-08 Score=104.06 Aligned_cols=170 Identities=20% Similarity=0.199 Sum_probs=107.3
Q ss_pred cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------------EEE
Q 009911 243 LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT---------------------FFN 301 (522)
Q Consensus 243 ~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~---------------------~i~ 301 (522)
+..+.+.|...+.. ++.++.+||+||+|+||+++|.++|+.+-+. |+.
T Consensus 9 ~~~~~~~l~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDA-----------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 34555666655432 3445789999999999999999999887432 111
Q ss_pred ee--hhhhhhhh-hchhHHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCC
Q 009911 302 VS--SATLASKW-RGESERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGT 374 (522)
Q Consensus 302 v~--~~~l~~~~-~g~~e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~ 374 (522)
+. +..-..+. ..-.-..|+.+.+.+... .-.|++||++|.|. ....+.||+.|++....
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~-- 143 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEPSPG-- 143 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCCCCC--
Confidence 10 00000000 000122344444433321 23599999999875 33568999999976543
Q ss_pred CCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHH
Q 009911 375 NEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDL 451 (522)
Q Consensus 375 ~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI 451 (522)
++||.+|+.++.|.+.+++||. .+.|+.|+.++-...+... .+. ..+...++..+.|-.+..+
T Consensus 144 --------~~fiL~~~~~~~lLpTIrSRCq-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 144 --------RYLWLISAQPARLPATIRSRCQ-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred --------CeEEEEECChhhCchHHHhhhe-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 6788888999999999999995 8899999998777776532 111 2234466777776544433
No 193
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.99 E-value=5.5e-09 Score=107.62 Aligned_cols=176 Identities=20% Similarity=0.187 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhh-----chhHH-------HHHHHHHHHHhhCCcEEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWR-----GESER-------MVRCLFDLARAYAPSTIFI 336 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~-----g~~e~-------~l~~~f~~a~~~~p~VL~I 336 (522)
.+|||+|++||||+++|++|.... +.+|+.++|..+..... |.... .....|..| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 489999999999999999998765 46999999987543211 10000 000112322 3589999
Q ss_pred echhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEEEeecCCC-------CCccHHHHhhcc-ccc
Q 009911 337 DEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKIVMVLAATNFP-------WDIDEALRRRLE-KRI 407 (522)
Q Consensus 337 DEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~VivIattn~p-------~~ld~aL~rRf~-~~i 407 (522)
||||.|. ..++..|+..++.-.... +........+.||++|+.. ..+.+.|..||. ..|
T Consensus 100 dei~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i 167 (329)
T TIGR02974 100 DELATAS------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVI 167 (329)
T ss_pred CChHhCC------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhc
Confidence 9998774 446677777776432110 0001112346788888754 245577888884 345
Q ss_pred ccCCCC--HHHHHHHHHHHHccC----CCC--Cccc---HHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 408 YIPLPN--FESRKELIKINLKTV----EVS--KDVD---IDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 408 ~i~~Pd--~~~R~~Ilk~~l~~~----~l~--~~~d---l~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
.+|+.. .++...|++.++... ... ..++ +..|....=--..++|.+++..++..+
T Consensus 168 ~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 168 TLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 555543 244555666555321 111 1233 233333321225577777777766543
No 194
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2e-10 Score=119.86 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=92.3
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEeehhhhhh-
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT----TFFNVSSATLAS- 309 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~----~~i~v~~~~l~~- 309 (522)
.+|.||+|++.+|+.|..+..- .+++||+|||||||||||+.+...+.- .+++++.-....
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g 241 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAG 241 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcc
Confidence 4789999999999999988864 369999999999999999999776631 111111110000
Q ss_pred hh--------------hchhHHHHHHHHH---------HHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHh
Q 009911 310 KW--------------RGESERMVRCLFD---------LARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 310 ~~--------------~g~~e~~l~~~f~---------~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~l 366 (522)
.+ .+++. ....+.- ....+ .+||||||+ .++.+.+++.|..-|
T Consensus 242 ~~~~~~~~~~~rPFr~PHHsa-S~~aLvGGG~~p~PGeIsLAH-~GVLFLDEl------------pef~~~iLe~LR~PL 307 (490)
T COG0606 242 DLHEGCPLKIHRPFRAPHHSA-SLAALVGGGGVPRPGEISLAH-NGVLFLDEL------------PEFKRSILEALREPL 307 (490)
T ss_pred cccccCccceeCCccCCCccc-hHHHHhCCCCCCCCCceeeec-CCEEEeecc------------chhhHHHHHHHhCcc
Confidence 00 00000 0000000 00011 259999999 456667888887777
Q ss_pred hhcCC---CCCCCCCCcceEEEEeecCCC-----------------------CCccHHHHhhcccccccCCCCHHH
Q 009911 367 DGVNN---TGTNEDGSRKIVMVLAATNFP-----------------------WDIDEALRRRLEKRIYIPLPNFES 416 (522)
Q Consensus 367 d~~~~---~~~~~~~~~~~VivIattn~p-----------------------~~ld~aL~rRf~~~i~i~~Pd~~~ 416 (522)
+.-.. ...........+.+|+++|.. ..+...|++|++..+.++.++..+
T Consensus 308 E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 308 ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred ccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 64221 111112233457788888842 145567777888888877766443
No 195
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.98 E-value=2.3e-09 Score=111.36 Aligned_cols=204 Identities=23% Similarity=0.212 Sum_probs=117.0
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEeehhhhhhh
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE----CGTTFFNVSSATLASK 310 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~----lg~~~i~v~~~~l~~~ 310 (522)
..++++||....-+.+++.+.. ......+|||+|++||||+.+|++|... ...||+.+||..+...
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 3467799976666666655532 1122348999999999999999998643 3679999999987543
Q ss_pred hhc-----hh-------HHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-CCCCC
Q 009911 311 WRG-----ES-------ERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-GTNED 377 (522)
Q Consensus 311 ~~g-----~~-------e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-~~~~~ 377 (522)
... .. ...-..+|+.|. -++||+|||..|- ...+..|+..|+.-... -+...
T Consensus 145 ~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP------------~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 145 LQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLP------------PEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred HHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCC------------HhHHHHHHHHHHcCceEecCCCC
Confidence 211 10 011122333333 3699999996653 45667888888853221 11122
Q ss_pred CCcceEEEEeecCCC--CCccH--HHHh-hcccccccCCCCH--HHHHHHHHHHHc----cCCCCCcccHHHHHHHcCCC
Q 009911 378 GSRKIVMVLAATNFP--WDIDE--ALRR-RLEKRIYIPLPNF--ESRKELIKINLK----TVEVSKDVDIDEVARRTDGY 446 (522)
Q Consensus 378 ~~~~~VivIattn~p--~~ld~--aL~r-Rf~~~i~i~~Pd~--~~R~~Ilk~~l~----~~~l~~~~dl~~LA~~t~Gy 446 (522)
.....|.+|++|+.. ..+-. .|.+ ++...|.+|..-+ .++..+.++++. .+....-.+..++.+..-.|
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y 289 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY 289 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 244557888887742 23333 4444 5554555554432 344455555553 33332222222333333323
Q ss_pred ----cHHHHHHHHHHHHHHHH
Q 009911 447 ----SGDDLTNVCRDASLNGM 463 (522)
Q Consensus 447 ----s~~dI~~lv~~A~~~a~ 463 (522)
.-++|.++|..++..+.
T Consensus 290 ~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 290 DWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CCCCcHHHHHHHHHHHHHHhc
Confidence 55788888888876653
No 196
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.97 E-value=1e-08 Score=105.62 Aligned_cols=200 Identities=19% Similarity=0.149 Sum_probs=112.6
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh--
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW-- 311 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~-- 311 (522)
+++++|.....+.+.+.+..- .....+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 567999777666666655321 1223489999999999999999998665 4699999998763211
Q ss_pred ---hchhH-------HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCc
Q 009911 312 ---RGESE-------RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSR 380 (522)
Q Consensus 312 ---~g~~e-------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~ 380 (522)
.|... ......|..+ ..++|||||||.|. ..++..|+..++.-.... +......
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~------------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP------------MLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC------------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 11000 0001122222 34799999998874 345677777776422110 0001112
Q ss_pred ceEEEEeecCCC-------CCccHHHHhhcc-cccccCCCCH--HHHHHHHHHHHccC----CCC--Cccc---HHHHHH
Q 009911 381 KIVMVLAATNFP-------WDIDEALRRRLE-KRIYIPLPNF--ESRKELIKINLKTV----EVS--KDVD---IDEVAR 441 (522)
Q Consensus 381 ~~VivIattn~p-------~~ld~aL~rRf~-~~i~i~~Pd~--~~R~~Ilk~~l~~~----~l~--~~~d---l~~LA~ 441 (522)
..+.||++|+.. ..+.+.|..||. ..|.+|+... ++...|+..++... ... ..++ +..|..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~ 219 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLN 219 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 236778877653 345577888883 3455544322 34445665554322 111 1233 233333
Q ss_pred HcCCCcHHHHHHHHHHHHHH
Q 009911 442 RTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 442 ~t~Gys~~dI~~lv~~A~~~ 461 (522)
..=--+-++|.++++.|+..
T Consensus 220 y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 220 YRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 22122567788888877653
No 197
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.97 E-value=1.2e-08 Score=114.99 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=96.2
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhh---------ccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEe
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQ---------GIRRPWKGVLMFGPPGTGKTLLAKAVATECG-------TTFFNV 302 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~---------~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-------~~~i~v 302 (522)
.|.|++.+|+.|...+...-....-+. ...+...+|||+|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 389999999988766643221100000 0113334899999999999999999998653 233443
Q ss_pred ehhhhhhhhhch-h-HHHH-HHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC---CCCCCC
Q 009911 303 SSATLASKWRGE-S-ERMV-RCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN---NTGTNE 376 (522)
Q Consensus 303 ~~~~l~~~~~g~-~-e~~l-~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~---~~~~~~ 376 (522)
.++.... +.+. + +..+ ...+.. ...+++||||+|.+. ...+..|+..|+.-. ...+..
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms------------~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCH------------NESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCC------------HHHHHHHHHHHhCCEEEEecCCcc
Confidence 3332211 0000 0 0000 001111 123799999998874 334566777775422 110101
Q ss_pred CCCcceEEEEeecCCCC-------------CccHHHHhhccccc-ccCCCCHHHHHHHHHHHH
Q 009911 377 DGSRKIVMVLAATNFPW-------------DIDEALRRRLEKRI-YIPLPNFESRKELIKINL 425 (522)
Q Consensus 377 ~~~~~~VivIattn~p~-------------~ld~aL~rRf~~~i-~i~~Pd~~~R~~Ilk~~l 425 (522)
..-...+.|||++|..+ .|+++|++||+..+ .++.|+.+.-..|-.+.+
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 11223478999999742 56799999997553 457777766555544433
No 198
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.96 E-value=1.2e-08 Score=109.91 Aligned_cols=152 Identities=24% Similarity=0.279 Sum_probs=92.6
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEeehhh-hhh
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT----TFFNVSSAT-LAS 309 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~----~~i~v~~~~-l~~ 309 (522)
..|.++.|...+++.+.-.+ ...++++|+||+|+|||+|++.++..+.. ..+++..-. +.+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 36788999988887764332 12358999999999999999999977631 122221100 000
Q ss_pred -----------------------hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHh
Q 009911 310 -----------------------KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 310 -----------------------~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~l 366 (522)
...|.....-...+..|. ..+||||||+.+ ...++..|+..|
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~------------~~~~~~~L~~~L 318 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEF------------ERRTLDALREPI 318 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhC------------CHHHHHHHHHHH
Confidence 001111000112233333 379999999654 346777788777
Q ss_pred hhcCC---CCCCCCCCcceEEEEeecCCCC---------------------CccHHHHhhcccccccCCCCHH
Q 009911 367 DGVNN---TGTNEDGSRKIVMVLAATNFPW---------------------DIDEALRRRLEKRIYIPLPNFE 415 (522)
Q Consensus 367 d~~~~---~~~~~~~~~~~VivIattn~p~---------------------~ld~aL~rRf~~~i~i~~Pd~~ 415 (522)
+.-.. ..+........+.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 54221 1111111234589999999642 4778999999999999988654
No 199
>PRK08116 hypothetical protein; Validated
Probab=98.94 E-value=1.1e-08 Score=102.33 Aligned_cols=173 Identities=17% Similarity=0.278 Sum_probs=98.4
Q ss_pred HHHHHhhhhh-ccCCCCCcccccCcHH---HHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 220 LAAMLERDVL-ETSPGVRWDDVAGLTE---AKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 220 ~~e~~~~~~~-~~~~~~~~~di~G~~~---vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..++....+ ..+...+|+++.--.. +...+.+++.. |........+++|+|++|||||+||.+||+++
T Consensus 66 ~~~l~~~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l 138 (268)
T PRK08116 66 IERLKSNSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEMKKENVGLLLWGSVGTGKTYLAACIANEL 138 (268)
T ss_pred HHHHHHhcCCCHHHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhhccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4444444433 3456677887754333 33344444422 11112233579999999999999999999987
Q ss_pred ---CCcEEEeehhhhhhhhhch----hHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 296 ---GTTFFNVSSATLASKWRGE----SERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 296 ---g~~~i~v~~~~l~~~~~g~----~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
+.+++.++..++...+... .......+++.. ....+|+|||+.... .....+..|+..++.
T Consensus 139 ~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~----------~t~~~~~~l~~iin~ 206 (268)
T PRK08116 139 IEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER----------DTEWAREKVYNIIDS 206 (268)
T ss_pred HHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC----------CCHHHHHHHHHHHHH
Confidence 7888999988776543221 111122233222 234799999995321 122344556666665
Q ss_pred cCCCCCCCCCCcceEEEEeecCCC-CC----ccHHHHhhc---ccccccCCCCHHHHHHHHH
Q 009911 369 VNNTGTNEDGSRKIVMVLAATNFP-WD----IDEALRRRL---EKRIYIPLPNFESRKELIK 422 (522)
Q Consensus 369 ~~~~~~~~~~~~~~VivIattn~p-~~----ld~aL~rRf---~~~i~i~~Pd~~~R~~Ilk 422 (522)
..... ..+|.|||.+ .+ ++..+.+|+ ...|.+.-+|. |..+.+
T Consensus 207 r~~~~---------~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 207 RYRKG---------LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred HHHCC---------CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHH
Confidence 54322 2467777765 33 456777775 23355555554 444443
No 200
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=3.5e-08 Score=100.67 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=91.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------cEEEeehhhhhhhhhchhHHHHHHHHH
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGT-----------------------TFFNVSSATLASKWRGESERMVRCLFD 324 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~-----------------------~~i~v~~~~l~~~~~g~~e~~l~~~f~ 324 (522)
++.++.+||+||.|+||+++|+++|..+-+ .|+.+.+.. .++.. .-..++.+.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHH
Confidence 355579999999999999999999998743 122232210 00001 1122444433
Q ss_pred HHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHH
Q 009911 325 LARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALR 400 (522)
Q Consensus 325 ~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~ 400 (522)
.+.. ..-.|++||++|.|. ....+.||+.+++.... +++|.+|+.++.+.+.++
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEPp~~----------t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEEPAPN----------CLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred HHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcCCCCC----------eEEEEEECChhhChHHHH
Confidence 3322 224699999999875 34568999999976543 788899999999999999
Q ss_pred hhcccccccCCCCHHHHHHHHHH
Q 009911 401 RRLEKRIYIPLPNFESRKELIKI 423 (522)
Q Consensus 401 rRf~~~i~i~~Pd~~~R~~Ilk~ 423 (522)
|||. .+.|+.|+.++..+.+..
T Consensus 157 SRCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 157 SRCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred hcce-eEeCCCCCHHHHHHHHHH
Confidence 9995 899999999888877754
No 201
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.92 E-value=1.5e-08 Score=111.46 Aligned_cols=202 Identities=22% Similarity=0.208 Sum_probs=119.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS 309 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~ 309 (522)
+...+++|+|.....+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 44678999998887777777664311 223489999999999999999999875 56999999987643
Q ss_pred hhhchhHHHHHHHHHH---------------HHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-
Q 009911 310 KWRGESERMVRCLFDL---------------ARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG- 373 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~---------------a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~- 373 (522)
... -..+|-. ......++|||||||.|. ..++..|+..++.-....
T Consensus 261 ~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 261 TLL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS------------PAFQAKLLRVLQEGEFERV 322 (534)
T ss_pred HHH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC------------HHHHHHHHHHHhcCcEEEC
Confidence 211 0111110 011234799999998774 346677777776422110
Q ss_pred CCCCCCcceEEEEeecCCC-------CCccHHHHhhcc-cccccCCCC--HHHHHHHHHHHHccCC----CCCccc---H
Q 009911 374 TNEDGSRKIVMVLAATNFP-------WDIDEALRRRLE-KRIYIPLPN--FESRKELIKINLKTVE----VSKDVD---I 436 (522)
Q Consensus 374 ~~~~~~~~~VivIattn~p-------~~ld~aL~rRf~-~~i~i~~Pd--~~~R~~Ilk~~l~~~~----l~~~~d---l 436 (522)
+........+.||++|+.. ..+.+.|..|+. ..|.+|... .++...|+..++.... ....++ +
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 0000111236777777654 244567777774 345555443 3455566666664321 111222 3
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 437 DEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 437 ~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
..|....=.-+.++|.++++.|+..+
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 34444321235678888888776543
No 202
>PRK12377 putative replication protein; Provisional
Probab=98.92 E-value=1.1e-08 Score=101.02 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=86.6
Q ss_pred hhhccCCCCCcccccC----cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcE
Q 009911 227 DVLETSPGVRWDDVAG----LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTF 299 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G----~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~ 299 (522)
++...+...+|+.+.. ...++..+..++... . ....+++|+||||||||+||.+||+.+ |..+
T Consensus 63 ~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~-------~---~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v 132 (248)
T PRK12377 63 GIQPLHRKCSFANYQVQNDGQRYALSQAKSIADEL-------M---TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV 132 (248)
T ss_pred CCCcccccCCcCCcccCChhHHHHHHHHHHHHHHH-------H---hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 3445567778988863 333444444444321 1 112589999999999999999999998 6778
Q ss_pred EEeehhhhhhhhhchhH--HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCC
Q 009911 300 FNVSSATLASKWRGESE--RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNED 377 (522)
Q Consensus 300 i~v~~~~l~~~~~g~~e--~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~ 377 (522)
+.++..++......... .....++.. .....+|+||||..... .......|...++......
T Consensus 133 ~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~~~----------s~~~~~~l~~ii~~R~~~~---- 196 (248)
T PRK12377 133 IVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQRE----------TKNEQVVLNQIIDRRTASM---- 196 (248)
T ss_pred EEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCCCC----------CHHHHHHHHHHHHHHHhcC----
Confidence 88888777654322110 011122222 23568999999965321 1223456666666554322
Q ss_pred CCcceEEEEeecCCC-C----CccHHHHhhc
Q 009911 378 GSRKIVMVLAATNFP-W----DIDEALRRRL 403 (522)
Q Consensus 378 ~~~~~VivIattn~p-~----~ld~aL~rRf 403 (522)
..+|.|||.. . .+...+.+|+
T Consensus 197 -----~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 197 -----RSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred -----CCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 2467778875 2 2344555555
No 203
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.88 E-value=4e-08 Score=108.79 Aligned_cols=52 Identities=37% Similarity=0.516 Sum_probs=44.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
.|+..|++|+|++++++.|..++... ++++|+||||||||+++++++..+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~--------------~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR--------------RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC--------------CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 45678999999999999998877531 38999999999999999999988754
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.88 E-value=3e-08 Score=101.90 Aligned_cols=62 Identities=21% Similarity=0.316 Sum_probs=49.2
Q ss_pred cc-cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEeeh
Q 009911 237 WD-DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT-------TFFNVSS 304 (522)
Q Consensus 237 ~~-di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~-------~~i~v~~ 304 (522)
|+ |++|+++++..|.+++.... .+.....+.++|+||||+|||+||++||+.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 89999999999998876432 233334467899999999999999999999976 7777654
No 205
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.85 E-value=1.5e-08 Score=110.24 Aligned_cols=200 Identities=24% Similarity=0.252 Sum_probs=114.5
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEee
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE-----------CGTTFFNVS 303 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~-----------lg~~~i~v~ 303 (522)
..|++|+|.....+.+.+.+... .....+|||+|++||||+++|++|... .+.+|+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 35889999887777777765321 122348999999999999999999877 457999999
Q ss_pred hhhhhhhh-----hchhHH--------HHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC
Q 009911 304 SATLASKW-----RGESER--------MVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN 370 (522)
Q Consensus 304 ~~~l~~~~-----~g~~e~--------~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~ 370 (522)
|..+.... .|..+. .-..+|+.|. .++||||||+.|. ..++..|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp------------~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMP------------LPLQTRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCC------------HHHHHHHHhhhhcCe
Confidence 98764321 111000 0011333332 3799999998764 456677877776422
Q ss_pred CCC-CCCCCCcceEEEEeecCCC-C------CccHHHHhhcccccccCCCCHHH----HHHHHHHHHccCC--CCCcccH
Q 009911 371 NTG-TNEDGSRKIVMVLAATNFP-W------DIDEALRRRLEKRIYIPLPNFES----RKELIKINLKTVE--VSKDVDI 436 (522)
Q Consensus 371 ~~~-~~~~~~~~~VivIattn~p-~------~ld~aL~rRf~~~i~i~~Pd~~~----R~~Ilk~~l~~~~--l~~~~dl 436 (522)
... +....-.-.|.||++|+.. . .+.+.|..|+. .+.+.+|...+ ...|+..++.... ....+.-
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 429 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSA 429 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 110 0001112236788888754 1 23345555663 44555555444 4456666664320 1111111
Q ss_pred ----------HHHHHH-cCCCcHHHHHHHHHHHHHH
Q 009911 437 ----------DEVARR-TDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 437 ----------~~LA~~-t~Gys~~dI~~lv~~A~~~ 461 (522)
..|... +. -+.++|.+++.+++..
T Consensus 430 ~a~~~~~~a~~~L~~y~WP-GNvREL~nvier~~i~ 464 (538)
T PRK15424 430 ALRQGLQQCETLLLHYDWP-GNVRELRNLMERLALF 464 (538)
T ss_pred HHHHhhHHHHHHHHhCCCC-chHHHHHHHHHHHHHh
Confidence 111111 22 2668889998887764
No 206
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.85 E-value=1.1e-08 Score=108.32 Aligned_cols=202 Identities=26% Similarity=0.297 Sum_probs=120.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA 308 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~ 308 (522)
....+|+||+|-......+.+.+.. .-.....|||.|.+||||..+|++|.+.. +.||+.+||..+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 4467899999977766666665532 12333589999999999999999998776 5699999998653
Q ss_pred hh-----hhchh--------HHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-C
Q 009911 309 SK-----WRGES--------ERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-T 374 (522)
Q Consensus 309 ~~-----~~g~~--------e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~ 374 (522)
.. ..|.. ..--..+|+.|.. +.||+|||. +....++..||..+..-.-.. +
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIg------------empl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIG------------EMPLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhc------------cCCHHHHHHHHHHHhhceEEecC
Confidence 22 11211 1101234444443 699999994 455678888888777422110 1
Q ss_pred CCCCCcceEEEEeecCCC--C-----CccHHHHhhcccccccCCCCHHHHH----HHHHHHHcc----CCC-CCccc---
Q 009911 375 NEDGSRKIVMVLAATNFP--W-----DIDEALRRRLEKRIYIPLPNFESRK----ELIKINLKT----VEV-SKDVD--- 435 (522)
Q Consensus 375 ~~~~~~~~VivIattn~p--~-----~ld~aL~rRf~~~i~i~~Pd~~~R~----~Ilk~~l~~----~~l-~~~~d--- 435 (522)
....-.-.|-||+|||.. + .+-+.|.-|+. ++.+..|...+|. .|...++.. +.. ...+.
T Consensus 374 ~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a 452 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDA 452 (560)
T ss_pred CCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHH
Confidence 112234458899999974 1 22344444774 5556666554443 344444432 111 11122
Q ss_pred HHHHH-HHcCCCcHHHHHHHHHHHHH
Q 009911 436 IDEVA-RRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 436 l~~LA-~~t~Gys~~dI~~lv~~A~~ 460 (522)
+..|. -.+.| .-++|.+++.++..
T Consensus 453 ~~~L~~y~WPG-NVRELeNviER~v~ 477 (560)
T COG3829 453 LALLLRYDWPG-NVRELENVIERAVN 477 (560)
T ss_pred HHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 22222 23444 56788888887764
No 207
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.84 E-value=1.5e-07 Score=92.28 Aligned_cols=109 Identities=23% Similarity=0.208 Sum_probs=66.8
Q ss_pred CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC-------------CCCcc
Q 009911 330 APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF-------------PWDID 396 (522)
Q Consensus 330 ~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~-------------p~~ld 396 (522)
-|.||||||++.|- -..+..|-+.++..-. .+||.++|+ |.-++
T Consensus 296 vPGVLFIDEVhMLD------------iEcFTyL~kalES~ia-----------PivifAsNrG~~~irGt~d~~sPhGip 352 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD------------IECFTYLHKALESPIA-----------PIVIFASNRGMCTIRGTEDILSPHGIP 352 (456)
T ss_pred cCcceEeeehhhhh------------hHHHHHHHHHhcCCCC-----------ceEEEecCCcceeecCCcCCCCCCCCC
Confidence 48899999997663 2334445555553221 345555553 56788
Q ss_pred HHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 397 EALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 397 ~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
+.|+.|+ ..|..-..+.++.++|+++......+. .+..+..|+.....-|.+...+|+.-|...+
T Consensus 353 ~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 353 PDLLDRL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred HHHhhhe-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 9999999 467777778888888998877554443 2334666666554444444444444444333
No 208
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.84 E-value=6e-08 Score=90.26 Aligned_cols=105 Identities=29% Similarity=0.396 Sum_probs=65.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh-----hchhH-------HHHHHHHHHHHhhCCcEEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW-----RGESE-------RMVRCLFDLARAYAPSTIFI 336 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~-----~g~~e-------~~l~~~f~~a~~~~p~VL~I 336 (522)
.+|||+|++||||+++|++|.+.. +.+|+.++|..+.... .|... ..-..+|+.|. .++|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~---~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQAN---GGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT---TSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeecc---ceEEee
Confidence 489999999999999999998865 4699999998764321 11100 00113444443 379999
Q ss_pred echhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEEEeecCC
Q 009911 337 DEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKIVMVLAATNF 391 (522)
Q Consensus 337 DEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~VivIattn~ 391 (522)
|||+.|. ..++..|+..|+.-.... +......-.+.||++|+.
T Consensus 100 d~I~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLP------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhH------------HHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 9998764 456788888887432111 111112345888888885
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.82 E-value=4e-08 Score=96.71 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=66.0
Q ss_pred hhccCCCCCcccccC-c---HHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEE
Q 009911 228 VLETSPGVRWDDVAG-L---TEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFF 300 (522)
Q Consensus 228 ~~~~~~~~~~~di~G-~---~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i 300 (522)
+...+...+|+++.- . ..+...+..++.. + .....+++|+|++|||||+|+.+||+++ |..++
T Consensus 62 i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~---~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~ 131 (244)
T PRK07952 62 IRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------F---DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVL 131 (244)
T ss_pred CCccccCCccccccCCCchHHHHHHHHHHHHHh-------h---ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 444556778888753 2 2344444444421 1 1112489999999999999999999998 77888
Q ss_pred Eeehhhhhhhhhchh---HHHHHHHHHHHHhhCCcEEEEechhhh
Q 009911 301 NVSSATLASKWRGES---ERMVRCLFDLARAYAPSTIFIDEIDSL 342 (522)
Q Consensus 301 ~v~~~~l~~~~~g~~---e~~l~~~f~~a~~~~p~VL~IDEiD~l 342 (522)
.++..++...+.... ......+++.. ....+|+|||++..
T Consensus 132 ~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 132 IITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred EEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 888888776443321 11122333332 24689999999764
No 210
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.81 E-value=6e-08 Score=102.66 Aligned_cols=202 Identities=24% Similarity=0.298 Sum_probs=122.5
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh-
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK- 310 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~- 310 (522)
....+++|...+.+.|.+.+.. .-...-.|||+|++||||-.+|++|.... +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4567899987777777766532 11223489999999999999999998776 459999999876432
Q ss_pred ----hhchhHH-------HHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC--CCCCCCC
Q 009911 311 ----WRGESER-------MVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN--NTGTNED 377 (522)
Q Consensus 311 ----~~g~~e~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~--~~~~~~~ 377 (522)
..|+... .-...|+.|. .++||||||..| ...++..||..+..-. ..+. ..
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~m------------pl~~Q~kLLRvLqe~~~~rvG~-~~ 271 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEM------------PLELQVKLLRVLQEREFERVGG-NK 271 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccC------------CHHHHHHHHHHHHcCeeEecCC-Cc
Confidence 1121110 0011333333 379999999554 4567788887776322 1111 11
Q ss_pred CCcceEEEEeecCCC-------CCccHHHHhhcccccccCCCCHHHHH----HHHHHHHcc----CC-CCCcccHHHHHH
Q 009911 378 GSRKIVMVLAATNFP-------WDIDEALRRRLEKRIYIPLPNFESRK----ELIKINLKT----VE-VSKDVDIDEVAR 441 (522)
Q Consensus 378 ~~~~~VivIattn~p-------~~ld~aL~rRf~~~i~i~~Pd~~~R~----~Ilk~~l~~----~~-l~~~~dl~~LA~ 441 (522)
.-.-.|-||++||.. ..+-+.|..|+. ++.+..|...+|. .|+.+++.. .. -...++-+.++.
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 123458899999975 234466667884 6777777665554 355555543 21 123344444444
Q ss_pred HcC-CC--cHHHHHHHHHHHHHHHH
Q 009911 442 RTD-GY--SGDDLTNVCRDASLNGM 463 (522)
Q Consensus 442 ~t~-Gy--s~~dI~~lv~~A~~~a~ 463 (522)
... .+ +-++|.++|..++..+-
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcCC
Confidence 332 12 45778888877766553
No 211
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.80 E-value=7.4e-08 Score=109.00 Aligned_cols=201 Identities=23% Similarity=0.287 Sum_probs=117.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK 310 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~ 310 (522)
+..|++++|.....+.+.+.+..- .....+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 457889999888877777665431 1222489999999999999999998765 569999999876322
Q ss_pred -----hhch--------hHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC--CCCC
Q 009911 311 -----WRGE--------SERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN--TGTN 375 (522)
Q Consensus 311 -----~~g~--------~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~--~~~~ 375 (522)
..|. ... ....|+.+ ..++||||||+.+. ..++..|+..++.-.. .+.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~-~~g~le~a---~~GtL~Ldei~~L~------------~~~Q~~L~~~l~~~~~~~~g~- 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQ-RIGRFELA---DKSSLFLDEVGDMP------------LELQPKLLRVLQEQEFERLGS- 504 (686)
T ss_pred HhhhhhcCcccccccccccc-hhhHHHhc---CCCeEEEechhhCC------------HHHHHHHHHHHHhCCEEeCCC-
Confidence 1111 000 11123322 34899999998764 4466777777764321 111
Q ss_pred CCCCcceEEEEeecCCCC-------CccHHHHhhcccccccCCCCHHHH----HHHHHHHHccC----CCC-Cccc---H
Q 009911 376 EDGSRKIVMVLAATNFPW-------DIDEALRRRLEKRIYIPLPNFESR----KELIKINLKTV----EVS-KDVD---I 436 (522)
Q Consensus 376 ~~~~~~~VivIattn~p~-------~ld~aL~rRf~~~i~i~~Pd~~~R----~~Ilk~~l~~~----~l~-~~~d---l 436 (522)
.......+.||++|+..- .+...|..|+. .+.|..|...+| ..|++.++... ... ..+. +
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 011123477888887641 33345555663 444555555444 34555555332 111 1122 3
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 437 DEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 437 ~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
..|....=-.+.++|.++++.|+..+
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 33433222236688999998887654
No 212
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=4.9e-08 Score=100.29 Aligned_cols=131 Identities=19% Similarity=0.248 Sum_probs=90.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEeehhhhhhhhhc-----hhHHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGT-------------------------TFFNVSSATLASKWRG-----ESERM 318 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~-------------------------~~i~v~~~~l~~~~~g-----~~e~~ 318 (522)
+.++.+||+||+|+|||++|+.+|+.+.+ .|+.+++..-.. -.| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~-~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP-ENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc-cccccCCCcCHHH
Confidence 55678999999999999999999998743 234443321000 001 11233
Q ss_pred HHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCC
Q 009911 319 VRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWD 394 (522)
Q Consensus 319 l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ 394 (522)
++.+.+.+.. ....|++||+++.|. ....+.|++.|+..... +.+|.+|+.+..
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep~~~----------~~~Ilvth~~~~ 155 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEPPPQ----------VVFLLVSHAADK 155 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhCcCC----------CEEEEEeCChHh
Confidence 5655555543 234599999998774 34557788888876421 456668888899
Q ss_pred ccHHHHhhcccccccCCCCHHHHHHHHHH
Q 009911 395 IDEALRRRLEKRIYIPLPNFESRKELIKI 423 (522)
Q Consensus 395 ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~ 423 (522)
+.+.+++|| ..+.|+.|+.++..+.+..
T Consensus 156 ll~ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 156 VLPTIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHHHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 999999999 4899999999887776653
No 213
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.79 E-value=1.4e-07 Score=102.31 Aligned_cols=209 Identities=15% Similarity=0.204 Sum_probs=118.0
Q ss_pred hhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee-h
Q 009911 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS-S 304 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~-~ 304 (522)
..|+++|.+.+.+||+-+..-.+.++.++..- +.+ ..+.+-+||+||+|||||++++.+|+++|..+.+-. +
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~------~~~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEM------FSG-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHH------hcc-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 46899999999999999887777777776531 111 122346788999999999999999999999887753 2
Q ss_pred hhhh------hhhhchh---H------HHHHHH-HHHHHh-----------hCCcEEEEechhhhhhccCCCCchhhHHH
Q 009911 305 ATLA------SKWRGES---E------RMVRCL-FDLARA-----------YAPSTIFIDEIDSLCNARGASGEHESSRR 357 (522)
Q Consensus 305 ~~l~------~~~~g~~---e------~~l~~~-f~~a~~-----------~~p~VL~IDEiD~l~~~~~~~~~~~~~~~ 357 (522)
..+. ..+.+.. + .....+ +..++. ..+.||+|+|+=.++ +.....
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~--------~~~~~~ 151 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVF--------HRDTSR 151 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeecccccc--------chhHHH
Confidence 2210 1111110 0 001111 111111 236799999995443 333344
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCcceEEEEee-cC------CC--------CCccHHHHh--hcccccccCCCCHHHHHHH
Q 009911 358 VKSELLVQVDGVNNTGTNEDGSRKIVMVLAA-TN------FP--------WDIDEALRR--RLEKRIYIPLPNFESRKEL 420 (522)
Q Consensus 358 ~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat-tn------~p--------~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~I 420 (522)
+...|...+..-. .. .++||.+ +. .. ..+++.++. ++ ..|.|-+-...-....
T Consensus 152 f~~~L~~~l~~~~--------~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKa 221 (519)
T PF03215_consen 152 FREALRQYLRSSR--------CL-PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKA 221 (519)
T ss_pred HHHHHHHHHHcCC--------CC-CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHH
Confidence 4444544443211 00 2555555 11 11 135566666 34 4567765555444444
Q ss_pred HHHHHccC--------CCCCccc-HHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009911 421 IKINLKTV--------EVSKDVD-IDEVARRTDGYSGDDLTNVCRDASLNGM 463 (522)
Q Consensus 421 lk~~l~~~--------~l~~~~d-l~~LA~~t~Gys~~dI~~lv~~A~~~a~ 463 (522)
|+..+... ......+ ++.|+..+. +||+.++..-.+.+.
T Consensus 222 L~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 222 LKRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 44443322 1111122 667777654 599999987777666
No 214
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.79 E-value=3.4e-08 Score=107.49 Aligned_cols=203 Identities=23% Similarity=0.216 Sum_probs=113.9
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW 311 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~ 311 (522)
..|++|+|.....+.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 56889999887777776665321 1122489999999999999999998764 5699999998764321
Q ss_pred -----hchhHH--------HHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCC
Q 009911 312 -----RGESER--------MVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNED 377 (522)
Q Consensus 312 -----~g~~e~--------~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~ 377 (522)
.|..+. .-..+|+.|. .++||||||+.|. ..++..|+..++.-.... +...
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp------------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP------------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC------------HHHHHHHHHHHhcCcEEecCCCc
Confidence 111000 0112333332 4799999998764 446677777776432110 0001
Q ss_pred CCcceEEEEeecCCC--C-----CccHHHHhhcc-cccccCCCCH--HHHHHHHHHHHccCCCC--CcccHH---H----
Q 009911 378 GSRKIVMVLAATNFP--W-----DIDEALRRRLE-KRIYIPLPNF--ESRKELIKINLKTVEVS--KDVDID---E---- 438 (522)
Q Consensus 378 ~~~~~VivIattn~p--~-----~ld~aL~rRf~-~~i~i~~Pd~--~~R~~Ilk~~l~~~~l~--~~~dl~---~---- 438 (522)
.....+-||++|+.. . .+.+.|..|+. ..|.+|+.-. ++...|+..++...... ..++-+ .
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~ 423 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGV 423 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHH
Confidence 112235788888765 1 23345555663 3444444422 34455666666443111 012211 1
Q ss_pred ---HHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 439 ---VARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 439 ---LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
|....=--+-++|.+++.+++...
T Consensus 424 ~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 424 ADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 222111125578888888776543
No 215
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.78 E-value=8.1e-08 Score=104.88 Aligned_cols=203 Identities=22% Similarity=0.224 Sum_probs=118.6
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh-
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW- 311 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~- 311 (522)
.+.+|+|.....+.+.+.+..- .....+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 5778999888777777766431 1223489999999999999999998875 4699999998764321
Q ss_pred ----hchhHHH-------HHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCC
Q 009911 312 ----RGESERM-------VRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGS 379 (522)
Q Consensus 312 ----~g~~e~~-------l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~ 379 (522)
.|..... ....|..+ ..++|||||||.|. ..++..|+..++.-.... +.....
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP------------LALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC------------HHHHHHHHHHHhcCCEeeCCCCcce
Confidence 1110000 00123322 34799999998874 345677777775422100 000112
Q ss_pred cceEEEEeecCCC-------CCccHHHHhhcccccccCCCCHHH----HHHHHHHHHccCC----C-CCccc---HHHHH
Q 009911 380 RKIVMVLAATNFP-------WDIDEALRRRLEKRIYIPLPNFES----RKELIKINLKTVE----V-SKDVD---IDEVA 440 (522)
Q Consensus 380 ~~~VivIattn~p-------~~ld~aL~rRf~~~i~i~~Pd~~~----R~~Ilk~~l~~~~----l-~~~~d---l~~LA 440 (522)
...+-||++|+.. ..+.+.|..|+. .+.|.+|...+ ...|+++++.... . ...++ +..|.
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 2347788888764 235566777774 34444444443 4445555554321 0 11222 33333
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHH
Q 009911 441 RRTDGYSGDDLTNVCRDASLNGMR 464 (522)
Q Consensus 441 ~~t~Gys~~dI~~lv~~A~~~a~~ 464 (522)
...=-.+.++|.+++..|+..+..
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcCC
Confidence 332223678899999888776543
No 216
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.77 E-value=8.4e-08 Score=104.92 Aligned_cols=203 Identities=20% Similarity=0.235 Sum_probs=113.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA 308 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~ 308 (522)
.....|++++|.....+.+.+.+..- ......|||+|++||||+++|+++.... ..+|+.++|..+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45678999999877655555544210 1112479999999999999999986654 4689999998764
Q ss_pred hhhh-----chhH-------HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CC
Q 009911 309 SKWR-----GESE-------RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TN 375 (522)
Q Consensus 309 ~~~~-----g~~e-------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~ 375 (522)
.... |... .....+|+.| ..++|||||||.|. ..++..|+..++.-.... +.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS------------PRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC------------HHHHHHHHHHHhcCCcccCCC
Confidence 3211 1000 0001123333 24799999998774 345567777765421110 00
Q ss_pred CCCCcceEEEEeecCCC-------CCccHHHHhhcccccccCCCCHHH----HHHHHHHHHcc----CCC-CCccc---H
Q 009911 376 EDGSRKIVMVLAATNFP-------WDIDEALRRRLEKRIYIPLPNFES----RKELIKINLKT----VEV-SKDVD---I 436 (522)
Q Consensus 376 ~~~~~~~VivIattn~p-------~~ld~aL~rRf~~~i~i~~Pd~~~----R~~Ilk~~l~~----~~l-~~~~d---l 436 (522)
.......+.||++|+.+ ..+.+.|..|+. .+.+..|...+ ...|+..++.. ... ...+. +
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 01112346788877654 234567777864 34444444433 44444444432 211 11233 2
Q ss_pred HHHHHH-cCCCcHHHHHHHHHHHHHH
Q 009911 437 DEVARR-TDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 437 ~~LA~~-t~Gys~~dI~~lv~~A~~~ 461 (522)
..|... +.| .-++|.+++..|...
T Consensus 412 ~~L~~y~WPG-NvreL~nvl~~a~~~ 436 (520)
T PRK10820 412 TVLTRYGWPG-NVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHhcCCCCC-HHHHHHHHHHHHHHh
Confidence 333332 222 667788888777654
No 217
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.7e-06 Score=90.24 Aligned_cols=214 Identities=21% Similarity=0.220 Sum_probs=136.7
Q ss_pred hhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-
Q 009911 218 PDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG- 296 (522)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg- 296 (522)
++..+.....+...+++-+ +.|-+.-.+.+++++..++.. ....++.+.|-||||||.+...+-..+.
T Consensus 133 ke~~~~~~~~l~~t~~p~~---l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~ 201 (529)
T KOG2227|consen 133 KEISEQRSESLLNTAPPGT---LKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVLDSLSK 201 (529)
T ss_pred HHHHHHHHHHHHhcCCCCC---ccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHHHhhhh
Confidence 3455555666677776655 899999999999998876532 2345899999999999999887755542
Q ss_pred ----CcEEEeehhhhhh----------hh----h-chhHHHHHHHHH-HHHhh-CCcEEEEechhhhhhccCCCCchhhH
Q 009911 297 ----TTFFNVSSATLAS----------KW----R-GESERMVRCLFD-LARAY-APSTIFIDEIDSLCNARGASGEHESS 355 (522)
Q Consensus 297 ----~~~i~v~~~~l~~----------~~----~-g~~e~~l~~~f~-~a~~~-~p~VL~IDEiD~l~~~~~~~~~~~~~ 355 (522)
...++++|.++.. .+ . +..+......|. ..... .+-||++||+|.|+....
T Consensus 202 ~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-------- 273 (529)
T KOG2227|consen 202 SSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-------- 273 (529)
T ss_pred hcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------
Confidence 2447777775421 11 0 111211222222 11222 256899999999984431
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHh---hc---ccccccCCCCHHHHHHHHHHHHccCC
Q 009911 356 RRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR---RL---EKRIYIPLPNFESRKELIKINLKTVE 429 (522)
Q Consensus 356 ~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~r---Rf---~~~i~i~~Pd~~~R~~Ilk~~l~~~~ 429 (522)
..|+ .+..+... ....+++|+.+|..+.-|..|-+ |+ ...+.|++++.++..+||+..+....
T Consensus 274 ----~vLy-~lFewp~l------p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 274 ----TVLY-TLFEWPKL------PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred ----ceee-eehhcccC------CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 1122 22222221 22448899999988766654444 22 56789999999999999999887766
Q ss_pred CCCcc--cHHHHHHHcCCCcHHHHHH---HHHHHHHHH
Q 009911 430 VSKDV--DIDEVARRTDGYSGDDLTN---VCRDASLNG 462 (522)
Q Consensus 430 l~~~~--dl~~LA~~t~Gys~~dI~~---lv~~A~~~a 462 (522)
..... .+.-+|++..|.|| |++. +|+.|...+
T Consensus 343 t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 343 TSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIA 379 (529)
T ss_pred ccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHH
Confidence 54333 36778888888776 5665 555555444
No 218
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.71 E-value=2.7e-07 Score=103.66 Aligned_cols=202 Identities=21% Similarity=0.245 Sum_probs=113.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK 310 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~ 310 (522)
...|++++|.....+.+.+.+..-. .....|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999997776666655553211 122479999999999999999998875 469999999876321
Q ss_pred -----hhchh----HHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCc
Q 009911 311 -----WRGES----ERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSR 380 (522)
Q Consensus 311 -----~~g~~----e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~ 380 (522)
+.|.. .......|+. ...++||||||+.|. ..++..|+..++.-.... +......
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~------------~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLS------------PELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCC------------HHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 11110 0000001222 235799999998764 445677777776322110 0000011
Q ss_pred ceEEEEeecCCC-------CCccHHHHhhcccccccCCCCHHHH----HHHHHHHHccCC----CCCccc---HHHHHHH
Q 009911 381 KIVMVLAATNFP-------WDIDEALRRRLEKRIYIPLPNFESR----KELIKINLKTVE----VSKDVD---IDEVARR 442 (522)
Q Consensus 381 ~~VivIattn~p-------~~ld~aL~rRf~~~i~i~~Pd~~~R----~~Ilk~~l~~~~----l~~~~d---l~~LA~~ 442 (522)
-.+.||+||+.. ..+.+.|..|+. .+.+.+|...+| ..|++.++.... ....++ +..|...
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYYALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhhhhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 246788888764 234455555663 445555554444 445555554321 111122 3333333
Q ss_pred cCCCcHHHHHHHHHHHHHH
Q 009911 443 TDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 443 t~Gys~~dI~~lv~~A~~~ 461 (522)
.=.-..++|.++++.|...
T Consensus 535 ~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 535 RWPGNDFELRSVIENLALS 553 (638)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2122557777888776653
No 219
>PRK08181 transposase; Validated
Probab=98.67 E-value=1.3e-07 Score=94.47 Aligned_cols=99 Identities=21% Similarity=0.321 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchh-HHHHHHHHHHHHhhCCcEEEEechhhhhhccC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGES-ERMVRCLFDLARAYAPSTIFIDEIDSLCNARG 347 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~-e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~ 347 (522)
.+++|+||+|||||+||.++++++ |..++.++..++...+.... +..+..++.. ...+.+|+|||++.+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~~~-- 182 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTKD-- 182 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEeccccccCC--
Confidence 489999999999999999999765 77888888888776542211 1112223322 234689999999865321
Q ss_pred CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC
Q 009911 348 ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP 392 (522)
Q Consensus 348 ~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p 392 (522)
......|+..++...... -+|.|||.+
T Consensus 183 --------~~~~~~Lf~lin~R~~~~----------s~IiTSN~~ 209 (269)
T PRK08181 183 --------QAETSVLFELISARYERR----------SILITANQP 209 (269)
T ss_pred --------HHHHHHHHHHHHHHHhCC----------CEEEEcCCC
Confidence 122344555555443321 367777776
No 220
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.65 E-value=1.6e-08 Score=77.71 Aligned_cols=44 Identities=48% Similarity=0.855 Sum_probs=36.7
Q ss_pred hccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Q 009911 477 NMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520 (522)
Q Consensus 477 ~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg 520 (522)
.+..+.+...+|+++||..||+++++|||.+++++|++|.++||
T Consensus 19 di~~~~l~~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 19 DIPAEKLKEPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp GS-GGGB-HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred hcCcccccCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34445555568999999999999999999999999999999998
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.65 E-value=1.1e-07 Score=97.68 Aligned_cols=111 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchh---HHHHHHHHHHHHhhCCcEEEEechhhhhhc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGES---ERMVRCLFDLARAYAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~---e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 345 (522)
.+++|+||+|||||+|+.+||+++ |..++.++..++...+.... .......++ ......+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~--~l~~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYD--LLINCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHH--HhccCCEEEEeccCCCCC-
Confidence 689999999999999999999997 77888999888766542210 000111122 223457999999965421
Q ss_pred cCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC-CC----ccHHHHhhc
Q 009911 346 RGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP-WD----IDEALRRRL 403 (522)
Q Consensus 346 ~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p-~~----ld~aL~rRf 403 (522)
.......|+..++...... -.+|.|||.+ .. +++.+.+|+
T Consensus 261 ---------t~~~~~~Lf~iin~R~~~~---------k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 261 ---------TEFSKSELFNLINKRLLRQ---------KKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred ---------CHHHHHHHHHHHHHHHHCC---------CCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1233355666666544322 1356677754 33 346777776
No 222
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.64 E-value=2.6e-06 Score=84.01 Aligned_cols=91 Identities=21% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCC-cccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 009911 392 PWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSK-DVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGK 470 (522)
Q Consensus 392 p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~-~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~ 470 (522)
|.-++-.|+.|+ ..|...+.+.++...||++.+....+.- +..++.|......-|.+--.+|+..|.+.+++|.
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk---- 413 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK---- 413 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc----
Confidence 568889999998 5788888899999999999887654332 2234556665555566667778888888888887
Q ss_pred ChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 471 TRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 471 ~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
...+..+|+..+...+-
T Consensus 414 --------------~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 414 --------------GKVVEVDDIERVYRLFL 430 (454)
T ss_pred --------------CceeehhHHHHHHHHHh
Confidence 45778888888877653
No 223
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=8.6e-07 Score=100.09 Aligned_cols=132 Identities=25% Similarity=0.318 Sum_probs=96.8
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCC--CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh------
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRR--PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA------ 308 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~--~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~------ 308 (522)
|+|++++...+-+++...- .+..+ +.-.+||.||.|+|||-||+++|..+ .-.|+.++++.+.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr------~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSR------AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred ccchHHHHHHHHHHHHhhh------cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 8999999999999986532 23333 56689999999999999999999998 3478888888532
Q ss_pred ---hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-CCCCCCCcceEE
Q 009911 309 ---SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-GTNEDGSRKIVM 384 (522)
Q Consensus 309 ---~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-~~~~~~~~~~Vi 384 (522)
..|.|..+ ...+.+..+...-+||+|||||.- ...+++.|+..+|.-... ..+...+-++++
T Consensus 638 gsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 638 GSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred CCCcccccchh--HHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 23555554 446667777777789999999863 345677788888854433 233444667799
Q ss_pred EEeecCC
Q 009911 385 VLAATNF 391 (522)
Q Consensus 385 vIattn~ 391 (522)
||+|+|.
T Consensus 704 ~IMTsn~ 710 (898)
T KOG1051|consen 704 FIMTSNV 710 (898)
T ss_pred EEEeccc
Confidence 9999875
No 224
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.63 E-value=1.7e-07 Score=90.51 Aligned_cols=181 Identities=21% Similarity=0.274 Sum_probs=94.5
Q ss_pred cCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeeh-h----hhhhhh-
Q 009911 241 AGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---TFFNVSS-A----TLASKW- 311 (522)
Q Consensus 241 ~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~-~----~l~~~~- 311 (522)
+|-+...+.|.+++.. .+...++|+||.|+|||+|++.+...+.. ..+.+.. . ......
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4556666666665532 12358999999999999999999999832 1111111 0 000000
Q ss_pred -----------------------------hchhHHHHHHHHHHHHhh-CCcEEEEechhhhh-hccCCCCchhhHHHHHH
Q 009911 312 -----------------------------RGESERMVRCLFDLARAY-APSTIFIDEIDSLC-NARGASGEHESSRRVKS 360 (522)
Q Consensus 312 -----------------------------~g~~e~~l~~~f~~a~~~-~p~VL~IDEiD~l~-~~~~~~~~~~~~~~~~~ 360 (522)
.......+..++...... ...||+|||++.+. ... ....+..
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------~~~~~~~ 142 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------EDKDFLK 142 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-------TTHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-------chHHHHH
Confidence 011233345555554443 34899999999987 211 2234455
Q ss_pred HHHHHhhhcCCCCCCCCCCcceEEEEeecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC-C-CCc
Q 009911 361 ELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE-V-SKD 433 (522)
Q Consensus 361 ~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~-l-~~~ 433 (522)
.|...++...... ...+|++++... ..-...+..|+.. +.++..+.++..++++..+.... + .++
T Consensus 143 ~l~~~~~~~~~~~-------~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~ 214 (234)
T PF01637_consen 143 SLRSLLDSLLSQQ-------NVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSD 214 (234)
T ss_dssp HHHHHHHH----T-------TEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------H
T ss_pred HHHHHHhhccccC-------CceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCH
Confidence 5666665533221 223444444421 0112234557765 99999999999999998776651 1 256
Q ss_pred ccHHHHHHHcCCCcH
Q 009911 434 VDIDEVARRTDGYSG 448 (522)
Q Consensus 434 ~dl~~LA~~t~Gys~ 448 (522)
.+++.+...+.|+.+
T Consensus 215 ~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 215 EDIEEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHhCCCHH
Confidence 678889999998643
No 225
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=6.6e-07 Score=93.93 Aligned_cols=200 Identities=25% Similarity=0.277 Sum_probs=117.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK 310 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~ 310 (522)
...+.+|||...+...+.+.+..- -.....|||.|.+||||..+|++|.... ..+|+.+||..+...
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 557788999888888887776531 1223489999999999999999998776 469999999876432
Q ss_pred -----hhchhHHHHHHHHHHHHhh--------CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCC
Q 009911 311 -----WRGESERMVRCLFDLARAY--------APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNE 376 (522)
Q Consensus 311 -----~~g~~e~~l~~~f~~a~~~--------~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~ 376 (522)
..|+- +..|.-|... ..+.||+|||- +....++..||..+..-.... +.+
T Consensus 289 LlESELFGHe----KGAFTGA~~~r~GrFElAdGGTLFLDEIG------------elPL~lQaKLLRvLQegEieRvG~~ 352 (550)
T COG3604 289 LLESELFGHE----KGAFTGAINTRRGRFELADGGTLFLDEIG------------ELPLALQAKLLRVLQEGEIERVGGD 352 (550)
T ss_pred HHHHHHhccc----ccccccchhccCcceeecCCCeEechhhc------------cCCHHHHHHHHHHHhhcceeecCCC
Confidence 22221 2222222211 23699999994 345667778887766322110 111
Q ss_pred CCCcceEEEEeecCCCCCccHHHH---------hhcccccccCCCCHHHH----HHHHHHHHcc----CCC-CCccc---
Q 009911 377 DGSRKIVMVLAATNFPWDIDEALR---------RRLEKRIYIPLPNFESR----KELIKINLKT----VEV-SKDVD--- 435 (522)
Q Consensus 377 ~~~~~~VivIattn~p~~ld~aL~---------rRf~~~i~i~~Pd~~~R----~~Ilk~~l~~----~~l-~~~~d--- 435 (522)
..-.-.|-||++||+ +|...++ -|+. .+-+..|-..+| ..+-+.++++ ... ...++
T Consensus 353 r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~A 429 (550)
T COG3604 353 RTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEA 429 (550)
T ss_pred ceeEEEEEEEeccch--hHHHHHHcCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 112344889999996 3333333 3553 333444443333 2333344432 222 11122
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 436 IDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 436 l~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
++.|....=--+-++|.+++.+|+..+
T Consensus 430 l~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 430 LELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 233333221125689999999999877
No 226
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.60 E-value=1.5e-06 Score=92.01 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=54.1
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
...|+++|.+.+.+||+=+..-+..+++++.. -..+. .....+-+||+||+||||||.++.+|+++|..+++-+
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~----~~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQ----VAEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHH----HHHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 34688889999999998877666666665541 01111 1122346889999999999999999999999888765
No 227
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.59 E-value=1.1e-06 Score=96.75 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehhhhhhhhhchhHHHHH
Q 009911 243 LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSATLASKWRGESERMVR 320 (522)
Q Consensus 243 ~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~~l~~~~~g~~e~~l~ 320 (522)
++++|..|.-+.+.|- ...||||.|++|+||++++++++..+.. +|+.+..+.......|... +.
T Consensus 8 ~~~~~~Al~l~av~p~-----------~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~D--l~ 74 (584)
T PRK13406 8 WADAALAAALLAVDPA-----------GLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLD--LA 74 (584)
T ss_pred HHHHHHHHHHhCcCcc-----------ccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCch--HH
Confidence 5667777766665541 1248999999999999999999999864 8888776654444444432 11
Q ss_pred HHHHHHHh-h--------CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC---CCCCCCCcceEEEEee
Q 009911 321 CLFDLARA-Y--------APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT---GTNEDGSRKIVMVLAA 388 (522)
Q Consensus 321 ~~f~~a~~-~--------~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~---~~~~~~~~~~VivIat 388 (522)
..+..-+. . ...||||||+. .+...+++.|+..|+.-... .+........+++|++
T Consensus 75 ~~l~~g~~~~~pGlla~Ah~GvL~lDe~n------------~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat 142 (584)
T PRK13406 75 ATLRAGRPVAQRGLLAEADGGVLVLAMAE------------RLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVAL 142 (584)
T ss_pred hHhhcCCcCCCCCceeeccCCEEEecCcc------------cCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec
Confidence 11111110 1 12699999994 44567889999988843211 1111113344788887
Q ss_pred cCCC---CCccHHHHhhcccccccCCCCHHH
Q 009911 389 TNFP---WDIDEALRRRLEKRIYIPLPNFES 416 (522)
Q Consensus 389 tn~p---~~ld~aL~rRf~~~i~i~~Pd~~~ 416 (522)
-|.. ..|.++++.||...+.+..++..+
T Consensus 143 ~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 143 DEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred CCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 4322 458899999999999999887654
No 228
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=5.7e-06 Score=83.40 Aligned_cols=169 Identities=12% Similarity=0.083 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE--------Eeehhhhhhh-----
Q 009911 244 TEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF--------NVSSATLASK----- 310 (522)
Q Consensus 244 ~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i--------~v~~~~l~~~----- 310 (522)
..+++.|..++.. ++.++.+||+|| +||+++|+++|..+-+.-- .-+|..+...
T Consensus 8 ~~~~~~L~~~~~~-----------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~ 74 (290)
T PRK07276 8 PKVFQRFQTILEQ-----------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDV 74 (290)
T ss_pred HHHHHHHHHHHHc-----------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCe
Confidence 4555556555532 355679999996 6899999999988743210 0011111100
Q ss_pred -h---hch--hHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCc
Q 009911 311 -W---RGE--SERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSR 380 (522)
Q Consensus 311 -~---~g~--~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 380 (522)
+ .|. .-..++.+...+.. ....|++||++|.|.. ...+.||+.+++....
T Consensus 75 ~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~------------~AaNaLLKtLEEPp~~-------- 134 (290)
T PRK07276 75 TVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV------------NAANSLLKVIEEPQSE-------- 134 (290)
T ss_pred eeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH------------HHHHHHHHHhcCCCCC--------
Confidence 0 011 12234444433322 2236999999998753 3458899999976543
Q ss_pred ceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 381 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 381 ~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
+++|.+|+.++.+-+.+++||. .|.|+. +.+...+++.. ..+. .+...++....| +++....+..
T Consensus 135 --t~~iL~t~~~~~lLpTI~SRcq-~i~f~~-~~~~~~~~L~~----~g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 135 --IYIFLLTNDENKVLPTIKSRTQ-IFHFPK-NEAYLIQLLEQ----KGLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred --eEEEEEECChhhCchHHHHcce-eeeCCC-cHHHHHHHHHH----cCCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 7888888889999999999995 788866 55554444432 2222 122334444445 5666666664
No 229
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.58 E-value=1.9e-07 Score=83.98 Aligned_cols=98 Identities=30% Similarity=0.438 Sum_probs=63.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT---TFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA 348 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~ 348 (522)
..|||+|++||||+++|++|....+. +|+.+++..+. ..+++.+ ...+|||+|||.+.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~----- 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS----- 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC-----
Confidence 48999999999999999999988753 66777776533 2233333 56899999998874
Q ss_pred CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC-C------CccHHHHhhcc
Q 009911 349 SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP-W------DIDEALRRRLE 404 (522)
Q Consensus 349 ~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p-~------~ld~aL~rRf~ 404 (522)
...+..|+..++..... .+-+|+++..+ . .+++.|..||.
T Consensus 83 -------~~~Q~~L~~~l~~~~~~---------~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 83 -------PEAQRRLLDLLKRQERS---------NVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp -------HHHHHHHHHHHHHCTTT---------TSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred -------HHHHHHHHHHHHhcCCC---------CeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 34556666666653211 13455554433 3 45677777774
No 230
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.57 E-value=3.6e-07 Score=100.85 Aligned_cols=183 Identities=21% Similarity=0.255 Sum_probs=98.0
Q ss_pred hhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhh-ccC-CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 218 PDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQ-GIR-RPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~-~~~-~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+++.+.+.+.+... |.|++++|+.|.-.+.... ..... +.+ +-.-+|||.|.||||||.|.+.+++.+
T Consensus 274 ~~i~~~l~~SiaPs--------IyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a 343 (682)
T COG1241 274 PDIYDILIKSIAPS--------IYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA 343 (682)
T ss_pred CcHHHHHHHHhccc--------ccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC
Confidence 44555555554443 8899999999877654321 11111 111 222489999999999999999999988
Q ss_pred CCcEEEeehhhhhhhhhchhHHHHHHHH--H---HHH---hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhh
Q 009911 296 GTTFFNVSSATLASKWRGESERMVRCLF--D---LAR---AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 296 g~~~i~v~~~~l~~~~~g~~e~~l~~~f--~---~a~---~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld 367 (522)
...++.-...+-. .|-+...++.-+ + .+- ...++|++|||+|.+-. .-...|...|+
T Consensus 344 Pr~vytsgkgss~---~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~------------~dr~aihEaME 408 (682)
T COG1241 344 PRGVYTSGKGSSA---AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE------------EDRVAIHEAME 408 (682)
T ss_pred CceEEEccccccc---cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh------------HHHHHHHHHHH
Confidence 6555432211100 010000000000 0 000 12358999999998642 12244555555
Q ss_pred hcC--CCCCC-CCCCcceEEEEeecCCCC-------------CccHHHHhhccccccc-CCCCHHHHHHHHHHHH
Q 009911 368 GVN--NTGTN-EDGSRKIVMVLAATNFPW-------------DIDEALRRRLEKRIYI-PLPNFESRKELIKINL 425 (522)
Q Consensus 368 ~~~--~~~~~-~~~~~~~VivIattn~p~-------------~ld~aL~rRf~~~i~i-~~Pd~~~R~~Ilk~~l 425 (522)
.-. ..... ...-+...-|+|++|..+ .|+++|++||+..+.+ ..|+.+.-..|..+.+
T Consensus 409 QQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 409 QQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred hcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHH
Confidence 321 11100 000112245788888664 5778999999865544 4566654444444433
No 231
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.56 E-value=1.8e-06 Score=93.75 Aligned_cols=228 Identities=22% Similarity=0.264 Sum_probs=134.3
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeehhhhhh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----------GTTFFNVSSATLAS 309 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----------g~~~i~v~~~~l~~ 309 (522)
|.+-+.-...|..++...+. . ......+.+.|-||||||..++.+-..| ...++++++-.+.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~------~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFIS------D-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccchhHHHHHHHHHHHhhcC------C-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 44555555555555543221 1 1112368899999999999999998876 35778888765543
Q ss_pred h----------hhchh---H---HHHHHHHHHHH-hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC
Q 009911 310 K----------WRGES---E---RMVRCLFDLAR-AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT 372 (522)
Q Consensus 310 ~----------~~g~~---e---~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~ 372 (522)
. +.|+. . ..+..-|.... ...++||+|||+|.|+... +..|.+.++-....
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~------------QdVlYn~fdWpt~~ 538 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS------------QDVLYNIFDWPTLK 538 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc------------HHHHHHHhcCCcCC
Confidence 1 12221 0 11112222111 2246899999999998653 24555555544332
Q ss_pred CCCCCCCcceEEEEeecCCCCCccH----HHHhhcc-cccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCc
Q 009911 373 GTNEDGSRKIVMVLAATNFPWDIDE----ALRRRLE-KRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYS 447 (522)
Q Consensus 373 ~~~~~~~~~~VivIattn~p~~ld~----aL~rRf~-~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys 447 (522)
. ..++||+.+|..+.... .+-+|++ .+|.|...+..+..+|+...+.......+-.++-+|++....|
T Consensus 539 ~-------sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavS 611 (767)
T KOG1514|consen 539 N-------SKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVS 611 (767)
T ss_pred C-------CceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcc
Confidence 2 33677777776543322 3334543 4688889999999999999988764333323444455444444
Q ss_pred H--HHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCC
Q 009911 448 G--DDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSV 504 (522)
Q Consensus 448 ~--~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~sv 504 (522)
| +....+|++|...+-.+...+ .......|++-|+.+|+..+-.+.
T Consensus 612 GDaRraldic~RA~Eia~~~~~~~-----------k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 612 GDARRALDICRRAAEIAEERNVKG-----------KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred ccHHHHHHHHHHHHHHhhhhcccc-----------cccccceeehHHHHHHHHHHhhhh
Confidence 3 233457777777666555311 111245788889999988876544
No 232
>PRK06921 hypothetical protein; Provisional
Probab=98.56 E-value=3.8e-07 Score=91.19 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=46.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDS 341 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~ 341 (522)
..+++|+|++|+|||+|+.+||+++ |..++.++..++........ ......+. ......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~--~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLN--RMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHH--HhcCCCEEEEecccc
Confidence 3589999999999999999999986 56778888776654322211 11111111 123468999999943
No 233
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.54 E-value=4.6e-07 Score=97.30 Aligned_cols=198 Identities=21% Similarity=0.224 Sum_probs=112.8
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhh
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWR 312 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~ 312 (522)
.+.+++|.....+.+...+.. ......+|+|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK----------IAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 345678866665555554421 11223479999999999999999998776 46899999987642211
Q ss_pred chhHHHHHHHHHH---------------HHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCC
Q 009911 313 GESERMVRCLFDL---------------ARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNE 376 (522)
Q Consensus 313 g~~e~~l~~~f~~---------------a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~ 376 (522)
-..+|.. ......++||||||+.|. ..++..|+..++.-.... +..
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~------------~~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP------------LNLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC------------HHHHHHHHHHHhhCeEEeCCCC
Confidence 1111210 011235799999998774 345677777776432110 000
Q ss_pred CCCcceEEEEeecCCC-------CCccHHHHhhcccccccCCCCHHHHH----HHHHHHHccC----CCC-Cccc---HH
Q 009911 377 DGSRKIVMVLAATNFP-------WDIDEALRRRLEKRIYIPLPNFESRK----ELIKINLKTV----EVS-KDVD---ID 437 (522)
Q Consensus 377 ~~~~~~VivIattn~p-------~~ld~aL~rRf~~~i~i~~Pd~~~R~----~Ilk~~l~~~----~l~-~~~d---l~ 437 (522)
......+.||++|+.. ..+.+.|..|+. .+.+..|...+|. .|++.++... ... ..++ +.
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 347 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALR 347 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 1112346778887765 245566777763 4555555555554 3555554332 111 1222 33
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
.|....=-.+.++|.+++..|+..+
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 4444332235688888888877543
No 234
>PRK06526 transposase; Provisional
Probab=98.53 E-value=2.4e-07 Score=92.03 Aligned_cols=70 Identities=21% Similarity=0.350 Sum_probs=46.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchh-HHHHHHHHHHHHhhCCcEEEEechhhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGES-ERMVRCLFDLARAYAPSTIFIDEIDSLC 343 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~-e~~l~~~f~~a~~~~p~VL~IDEiD~l~ 343 (522)
.+++|+||||||||+||.+|+.++ |..++.++...+........ ...+...+.. ...+.+|+|||++.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 489999999999999999998876 66777777776655432110 1111222221 2346899999998653
No 235
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=3.3e-07 Score=81.30 Aligned_cols=69 Identities=26% Similarity=0.324 Sum_probs=45.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG--TTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSL 342 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg--~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l 342 (522)
+.++|+||+|||||++++.+++.+. ..++.++..+.........+ +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4789999999999999999998886 67777776654432111111 222222221125689999999876
No 236
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.52 E-value=2.9e-06 Score=91.75 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=100.5
Q ss_pred ChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 217 DPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.+++.++|-+.+... |.|++++|+.|...+..- ...++.++. -+..-+|||+|.||||||-|.+.+++.+
T Consensus 416 rpdiy~lLa~SiAPs--------Iye~edvKkglLLqLfGG-t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~ 486 (804)
T KOG0478|consen 416 RPDIYELLARSIAPS--------IYELEDVKKGLLLQLFGG-TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLL 486 (804)
T ss_pred CccHHHHHHHhhchh--------hhcccchhhhHHHHHhcC-CcccccccccccccceEEEecCCCcCHHHHHHHHHHhC
Confidence 355677777766554 889999999987766432 122233322 2333589999999999999999999988
Q ss_pred CCcEEEeehhh-hhhh--h---hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhc
Q 009911 296 GTTFFNVSSAT-LASK--W---RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGV 369 (522)
Q Consensus 296 g~~~i~v~~~~-l~~~--~---~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~ 369 (522)
..-++.-.-.. -.+- | -+++...+...=. .-....+|.+|||+|+|.... .+.|+..|+.-
T Consensus 487 pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGA-LVLSD~GiCCIDEFDKM~dSt------------rSvLhEvMEQQ 553 (804)
T KOG0478|consen 487 PRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGA-LVLSDNGICCIDEFDKMSDST------------RSVLHEVMEQQ 553 (804)
T ss_pred CcceeecCCccchhcceeeEEecCccceeeeecCc-EEEcCCceEEchhhhhhhHHH------------HHHHHHHHHHh
Confidence 54443221110 0000 0 0011111100000 001124689999999984221 13344334321
Q ss_pred C----CCCCCCCCCcceEEEEeecCCCC-------------CccHHHHhhcccccc-cCCCCHHHHHHHHHHHH
Q 009911 370 N----NTGTNEDGSRKIVMVLAATNFPW-------------DIDEALRRRLEKRIY-IPLPNFESRKELIKINL 425 (522)
Q Consensus 370 ~----~~~~~~~~~~~~VivIattn~p~-------------~ld~aL~rRf~~~i~-i~~Pd~~~R~~Ilk~~l 425 (522)
. ..+- ...-+...-|||++|... .|++.|++||+..+. +..||+..-+.|-.+..
T Consensus 554 TvSIAKAGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 554 TLSIAKAGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred hhhHhhcce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 1 0000 000112256888888431 577999999985443 46677764445555443
No 237
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.51 E-value=1.5e-07 Score=94.44 Aligned_cols=142 Identities=22% Similarity=0.276 Sum_probs=79.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeehhhhhhhhhchhHHHHHHHHHHHH-----------hhCCcEEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT---FFNVSSATLASKWRGESERMVRCLFDLAR-----------AYAPSTIFID 337 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~---~i~v~~~~l~~~~~g~~e~~l~~~f~~a~-----------~~~p~VL~ID 337 (522)
++|||+||+|||||++++.+-..+... +..++++... +...++.+++... .....|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 589999999999999999887766432 2223332211 1122332222110 1123499999
Q ss_pred chhhhhhccCCCCchhhHHHHHHHHHHHhh---hcCCCCCCCCCCcceEEEEeecCCC---CCccHHHHhhcccccccCC
Q 009911 338 EIDSLCNARGASGEHESSRRVKSELLVQVD---GVNNTGTNEDGSRKIVMVLAATNFP---WDIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 338 EiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld---~~~~~~~~~~~~~~~VivIattn~p---~~ld~aL~rRf~~~i~i~~ 411 (522)
|++.-.... -..... .+||.++- ++..........-..+.+||+++.+ ..+++.|.|.| ..+.++.
T Consensus 108 DlN~p~~d~------ygtq~~-iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~ 179 (272)
T PF12775_consen 108 DLNMPQPDK------YGTQPP-IELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPY 179 (272)
T ss_dssp TTT-S---T------TS--HH-HHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE---
T ss_pred ccCCCCCCC------CCCcCH-HHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecC
Confidence 997643221 111222 34554443 3333322222233457888888754 35889999999 5899999
Q ss_pred CCHHHHHHHHHHHHcc
Q 009911 412 PNFESRKELIKINLKT 427 (522)
Q Consensus 412 Pd~~~R~~Ilk~~l~~ 427 (522)
|+.+....|+...+..
T Consensus 180 p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 180 PSDESLNTIFSSILQS 195 (272)
T ss_dssp -TCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 9999999988877754
No 238
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.51 E-value=1.4e-07 Score=88.76 Aligned_cols=69 Identities=25% Similarity=0.462 Sum_probs=46.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchh-HHHHHHHHHHHHhhCCcEEEEechhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGES-ERMVRCLFDLARAYAPSTIFIDEIDS 341 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~-e~~l~~~f~~a~~~~p~VL~IDEiD~ 341 (522)
..+++|+||+|||||+||.++++++ |..++.++..++........ .......+.. .....+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~--l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR--LKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH--HHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc--cccccEecccccce
Confidence 3599999999999999999999876 78888899888876543221 0112222222 23457999999953
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.49 E-value=4.8e-07 Score=92.25 Aligned_cols=69 Identities=22% Similarity=0.369 Sum_probs=48.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchh-HHHHHHHHHHHHhhCCcEEEEechhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGES-ERMVRCLFDLARAYAPSTIFIDEIDS 341 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~-e~~l~~~f~~a~~~~p~VL~IDEiD~ 341 (522)
.+|++|+||+|||||+|+.++|+++ |..+..+...++...+.... ...+...++. .....+|+||||..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~--l~~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA--VKEAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH--hcCCCEEEEecCCC
Confidence 4699999999999999999999998 77788888777665432211 0112223332 23457999999954
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.48 E-value=1.6e-06 Score=86.08 Aligned_cols=69 Identities=28% Similarity=0.432 Sum_probs=48.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchhHH-H-HHHHHHHHHhhCCcEEEEechhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGESER-M-VRCLFDLARAYAPSTIFIDEIDS 341 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~e~-~-l~~~f~~a~~~~p~VL~IDEiD~ 341 (522)
..+++|+||||+|||+||-||++++ |..++.+...++.......... . -..+... .....+|+||||-.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~--l~~~dlLIiDDlG~ 178 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE--LKKVDLLIIDDIGY 178 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH--hhcCCEEEEecccC
Confidence 3599999999999999999999888 7889999988887654322111 0 1111111 23357999999954
No 241
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.5e-06 Score=87.42 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=80.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh---
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTT----------------FFNVSSATLASKWRGESERMVRCLFDLARA--- 328 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~~----------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~--- 328 (522)
++.++.+||+||.|+||+.+|.++|..+-+. ++.+.+.. .+.. -.-..++.+...+..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPY 92 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCcc
Confidence 3456799999999999999999999988542 11111100 0000 012224444443332
Q ss_pred -hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhccccc
Q 009911 329 -YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRI 407 (522)
Q Consensus 329 -~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i 407 (522)
....|++||++|.|.. ...+.||+.+++.... +++|..|+.++.+.+.+++||. .+
T Consensus 93 e~~~kv~ii~~ad~mt~------------~AaNaLLK~LEEPp~~----------~~fiL~~~~~~~ll~TI~SRcq-~~ 149 (290)
T PRK05917 93 ESPYKIYIIHEADRMTL------------DAISAFLKVLEDPPQH----------GVIILTSAKPQRLPPTIRSRSL-SI 149 (290)
T ss_pred CCCceEEEEechhhcCH------------HHHHHHHHHhhcCCCC----------eEEEEEeCChhhCcHHHHhcce-EE
Confidence 2235999999998753 3568999999975543 7888888999999999999995 67
Q ss_pred ccCCC
Q 009911 408 YIPLP 412 (522)
Q Consensus 408 ~i~~P 412 (522)
.|+.+
T Consensus 150 ~~~~~ 154 (290)
T PRK05917 150 HIPME 154 (290)
T ss_pred Eccch
Confidence 77654
No 242
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.46 E-value=2.8e-06 Score=91.91 Aligned_cols=199 Identities=23% Similarity=0.223 Sum_probs=114.1
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhh
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWR 312 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~ 312 (522)
.+.+++|.....+.+.+.+.. .......|||+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 456788876665555544421 11223479999999999999999998876 4699999998763221
Q ss_pred chhHHHHHHHHHHH---------------HhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCC
Q 009911 313 GESERMVRCLFDLA---------------RAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNE 376 (522)
Q Consensus 313 g~~e~~l~~~f~~a---------------~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~ 376 (522)
.-..+|-.. .....++|||||||.|. ..++..|+..++.-.... +..
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP------------LDVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC------------HHHHHHHHHHHhcCcEEeCCCC
Confidence 111122110 01224789999998774 345567777776432110 000
Q ss_pred CCCcceEEEEeecCCC-------CCccHHHHhhcc-cccccCCCC--HHHHHHHHHHHHccCC----C----CCcccHHH
Q 009911 377 DGSRKIVMVLAATNFP-------WDIDEALRRRLE-KRIYIPLPN--FESRKELIKINLKTVE----V----SKDVDIDE 438 (522)
Q Consensus 377 ~~~~~~VivIattn~p-------~~ld~aL~rRf~-~~i~i~~Pd--~~~R~~Ilk~~l~~~~----l----~~~~dl~~ 438 (522)
......+.||+||+.. ..+.+.|..||. ..|.+|+.. .++...|+..++.... . .....+..
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 1112346788887754 245577888883 445555432 2445556666654321 1 11122334
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
|....=-...++|.++++.+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC
Confidence 444332336688888888877644
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=98.45 E-value=7.9e-07 Score=88.64 Aligned_cols=70 Identities=29% Similarity=0.428 Sum_probs=47.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhch-hHHHHHHHHHHHHhhCCcEEEEechhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGE-SERMVRCLFDLARAYAPSTIFIDEIDSL 342 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~-~e~~l~~~f~~a~~~~p~VL~IDEiD~l 342 (522)
.+++|+||+|||||+|+.+++..+ |..+..++...+...+... ....+..++... ...+.+|+|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 489999999999999999997764 6677777777665443211 111133344332 245689999999764
No 244
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=4.8e-06 Score=82.08 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=79.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------------EEEeehhhhhhhhhchhHHHHHHHHHHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTT----------------------FFNVSSATLASKWRGESERMVRCLFDLA 326 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~----------------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a 326 (522)
.+++.+||+||.|+||..+|.++|+.+-+. ++.+.... . .-.-..++.+.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~---~--~I~id~ir~l~~~l 79 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK---N--PIKKEDALSIINKL 79 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc---c--cCCHHHHHHHHHHH
Confidence 456899999999999999999999887432 11111100 0 00112233333222
Q ss_pred H----h-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHh
Q 009911 327 R----A-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR 401 (522)
Q Consensus 327 ~----~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~r 401 (522)
. . ....|++|+++|.+. ....+.||+.+++.... +++|.+|+.++.+.+.+++
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEEPp~~----------t~fiLit~~~~~lLpTI~S 137 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKLN------------KQSANSLLKLIEEPPKN----------TYGIFTTRNENNILNTILS 137 (261)
T ss_pred ccCchhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcCCCCC----------eEEEEEECChHhCchHhhh
Confidence 1 1 234699999999875 34568999999975543 7889999999999999999
Q ss_pred hcccccccCCC
Q 009911 402 RLEKRIYIPLP 412 (522)
Q Consensus 402 Rf~~~i~i~~P 412 (522)
||. .+.++.+
T Consensus 138 RCq-~~~~~~~ 147 (261)
T PRK05818 138 RCV-QYVVLSK 147 (261)
T ss_pred hee-eeecCCh
Confidence 996 5677766
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=3e-06 Score=74.68 Aligned_cols=72 Identities=26% Similarity=0.408 Sum_probs=48.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEeehhhhhh--hh------------h--chhHHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC--------GTTFFNVSSATLAS--KW------------R--GESERMVRCLFDLAR 327 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l--------g~~~i~v~~~~l~~--~~------------~--g~~e~~l~~~f~~a~ 327 (522)
+.++++||+|+|||++++.++..+ ...++.+++..... .+ . .........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 479999999999999999999988 67788887664431 00 0 122334445555555
Q ss_pred hhCCcEEEEechhhhh
Q 009911 328 AYAPSTIFIDEIDSLC 343 (522)
Q Consensus 328 ~~~p~VL~IDEiD~l~ 343 (522)
.....+|+|||+|.+.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999874
No 246
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.39 E-value=6e-06 Score=86.52 Aligned_cols=247 Identities=20% Similarity=0.226 Sum_probs=133.8
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh---------hhhh
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS---------ATLA 308 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~---------~~l~ 308 (522)
+|.|++++|+.|.-+++--.... ...++. +-.-+|+|.|.||+.|+-|.++|.+.....++.-.. +-+.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~-~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmk 421 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKS-PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMK 421 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCC-CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhc
Confidence 49999999999988776432111 111221 222489999999999999999999887555543321 1111
Q ss_pred hhhhchhHHHHH-HHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEe
Q 009911 309 SKWRGESERMVR-CLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLA 387 (522)
Q Consensus 309 ~~~~g~~e~~l~-~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIa 387 (522)
+...|+. .+. ..+-.| ..+|.+|||+|++... +....-.++.+-...|........ -+..+-|++
T Consensus 422 DpvTgEM--~LEGGALVLA---D~GICCIDEfDKM~e~-----DRtAIHEVMEQQTISIaKAGI~Tt----LNAR~sILa 487 (721)
T KOG0482|consen 422 DPVTGEM--VLEGGALVLA---DGGICCIDEFDKMDES-----DRTAIHEVMEQQTISIAKAGINTT----LNARTSILA 487 (721)
T ss_pred CCCCCee--EeccceEEEc---cCceEeehhhhhhhhh-----hhHHHHHHHHhhhhhhhhhccccc----hhhhHHhhh
Confidence 1111110 000 000011 2368999999998532 112222222221111221111110 112256788
Q ss_pred ecCCCC-------------CccHHHHhhccccccc-CCCCHHHHHHHHHHHHc--cCCCCCc-----ccH------HHHH
Q 009911 388 ATNFPW-------------DIDEALRRRLEKRIYI-PLPNFESRKELIKINLK--TVEVSKD-----VDI------DEVA 440 (522)
Q Consensus 388 ttn~p~-------------~ld~aL~rRf~~~i~i-~~Pd~~~R~~Ilk~~l~--~~~l~~~-----~dl------~~LA 440 (522)
++|..+ .|+.+|++||+..+.+ ..||.+.-..|-++..- ...-.+. +++ -.+|
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~a 567 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLA 567 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHH
Confidence 888543 6789999999866655 66888776666665431 1111111 332 2466
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHhhcC-----ChHH---Hhhcccc----ccCCCCccHHHHHHHHHhhC
Q 009911 441 RRTDGYSGDDLTNVCRDASLNGMRRKIAGK-----TRDE---IKNMSKD----EISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 441 ~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~-----~~~~---i~~~~~~----~~~~~~lt~~df~~AL~~~~ 501 (522)
+...-+.+.++...+..|....++...... ++-. |..++.. -+ ...|..+|+.+||..++
T Consensus 568 k~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRl-s~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 568 KRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRL-SDSVEEDDVNEALRLME 639 (721)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhh-ccccchhhHHHHHHHHH
Confidence 666677888888888777766555442221 1111 1111111 11 45678888888888764
No 247
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.32 E-value=7.2e-07 Score=92.84 Aligned_cols=137 Identities=23% Similarity=0.281 Sum_probs=74.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEeehhhhhh-------hhhchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGT-TFFNVSSATLAS-------KWRGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~-~~i~v~~~~l~~-------~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
.+++|++|||+.|+|||+|...+...+.. .-..+.-..++. .+.+... .+..+.+... ..-.||++||++
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~-~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDD-PLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCc-cHHHHHHHHH-hcCCEEEEeeee
Confidence 46789999999999999999999988854 112222122221 1111111 1222221111 123599999996
Q ss_pred hhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC-CCcc-HHHHh-hcccccccCCCCHHHH
Q 009911 341 SLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP-WDID-EALRR-RLEKRIYIPLPNFESR 417 (522)
Q Consensus 341 ~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p-~~ld-~aL~r-Rf~~~i~i~~Pd~~~R 417 (522)
.- +-....++..|+..+-. ..|++|+|+|.+ ++|- ..|.+ +|...
T Consensus 138 V~---------DiaDAmil~rLf~~l~~------------~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~----------- 185 (362)
T PF03969_consen 138 VT---------DIADAMILKRLFEALFK------------RGVVLVATSNRPPEDLYKNGLQRERFLPF----------- 185 (362)
T ss_pred cc---------chhHHHHHHHHHHHHHH------------CCCEEEecCCCChHHHcCCcccHHHHHHH-----------
Confidence 42 12223444445444321 228999999986 3332 23322 34211
Q ss_pred HHHHHHHHccCCCCCcccHHHH
Q 009911 418 KELIKINLKTVEVSKDVDIDEV 439 (522)
Q Consensus 418 ~~Ilk~~l~~~~l~~~~dl~~L 439 (522)
..+|+..+.-+.+....|+...
T Consensus 186 I~~l~~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 186 IDLLKRRCDVVELDGGVDYRRR 207 (362)
T ss_pred HHHHHhceEEEEecCCCchhhh
Confidence 3466666666666666666553
No 248
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.9e-05 Score=80.20 Aligned_cols=126 Identities=9% Similarity=-0.016 Sum_probs=85.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC-------------cEEEeehhhhhhhhhchhHHHHHHHHHHHHh-----hCC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGT-------------TFFNVSSATLASKWRGESERMVRCLFDLARA-----YAP 331 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~-------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~-----~~p 331 (522)
..+..||+|+.|.||+.+++.+++.+-+ .++.++.. +... .-..++.+.+.... ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCc
Confidence 4468889999999999999999999732 12222200 0001 11223344333321 245
Q ss_pred cEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCC
Q 009911 332 STIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 332 ~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~ 411 (522)
.|++||++|.+. ....+.||+.|+..... +++|.+|+.+..+-+++++||. .+.|..
T Consensus 92 KvvII~~~e~m~------------~~a~NaLLK~LEEPp~~----------t~~il~~~~~~kll~TI~SRc~-~~~f~~ 148 (299)
T PRK07132 92 KILIIKNIEKTS------------NSLLNALLKTIEEPPKD----------TYFLLTTKNINKVLPTIVSRCQ-VFNVKE 148 (299)
T ss_pred eEEEEecccccC------------HHHHHHHHHHhhCCCCC----------eEEEEEeCChHhChHHHHhCeE-EEECCC
Confidence 699999998764 23457899999976543 5666666688999999999995 899999
Q ss_pred CCHHHHHHHHHH
Q 009911 412 PNFESRKELIKI 423 (522)
Q Consensus 412 Pd~~~R~~Ilk~ 423 (522)
++.++....+..
T Consensus 149 l~~~~l~~~l~~ 160 (299)
T PRK07132 149 PDQQKILAKLLS 160 (299)
T ss_pred CCHHHHHHHHHH
Confidence 988887766654
No 249
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.32 E-value=9.4e-06 Score=87.41 Aligned_cols=171 Identities=25% Similarity=0.276 Sum_probs=97.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchhHHHHHHHHHH---------------HHhhCCcE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGESERMVRCLFDL---------------ARAYAPST 333 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~---------------a~~~~p~V 333 (522)
..+|++|++||||+++|+++.... +.+|+.++|..+..... -..+|-. ......++
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL------ESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH------HHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 489999999999999999997765 46999999987643211 1111110 01112479
Q ss_pred EEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEEEeecCCC-------CCccHHHHhhccc
Q 009911 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKIVMVLAATNFP-------WDIDEALRRRLEK 405 (522)
Q Consensus 334 L~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~VivIattn~p-------~~ld~aL~rRf~~ 405 (522)
|||||||.|. ..++..|+..++.-.... +........+.||++|+.. ..+.+.+..|+.
T Consensus 241 l~ld~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~- 307 (457)
T PRK11361 241 LLLDEIGEMP------------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN- 307 (457)
T ss_pred EEEechhhCC------------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-
Confidence 9999998875 335677777776432110 0001112346788888754 245566666763
Q ss_pred ccccCCCCHHHHH----HHHHHHHccCCC----C-Cccc---HHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009911 406 RIYIPLPNFESRK----ELIKINLKTVEV----S-KDVD---IDEVARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 406 ~i~i~~Pd~~~R~----~Ilk~~l~~~~l----~-~~~d---l~~LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
.+.+..|...+|. .|+..++..... . ..++ +..|....=....++|.++++.|...
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 4556666555543 344444433211 1 1222 23333322223567888888877654
No 250
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.29 E-value=1.3e-05 Score=86.55 Aligned_cols=197 Identities=23% Similarity=0.231 Sum_probs=111.3
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhch
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGE 314 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~ 314 (522)
.+++|.....+.+...+.. .......+++.|.+||||+++|+++.... +.+|+.++|..+...+.
T Consensus 134 ~~lig~s~~~~~v~~~i~~----------~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~-- 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGR----------LSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI-- 201 (463)
T ss_pred cceeecCHHHHHHHHHHHH----------HhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH--
Confidence 4577866665555544422 01122479999999999999999998775 46899999987643211
Q ss_pred hHHHHHHHHHH---------------HHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCC
Q 009911 315 SERMVRCLFDL---------------ARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDG 378 (522)
Q Consensus 315 ~e~~l~~~f~~---------------a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~ 378 (522)
-..+|-. ......++|||||||.|. ..++..|+..++.-.... +....
T Consensus 202 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~------------~~~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 202 ----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP------------LDAQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred ----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC------------HHHHHHHHHHHhcCcEEECCCCce
Confidence 0111110 011235799999998774 334566777665322100 00001
Q ss_pred CcceEEEEeecCCC-------CCccHHHHhhcc-cccccCCCC--HHHHHHHHHHHHccCCC-----CCccc---HHHHH
Q 009911 379 SRKIVMVLAATNFP-------WDIDEALRRRLE-KRIYIPLPN--FESRKELIKINLKTVEV-----SKDVD---IDEVA 440 (522)
Q Consensus 379 ~~~~VivIattn~p-------~~ld~aL~rRf~-~~i~i~~Pd--~~~R~~Ilk~~l~~~~l-----~~~~d---l~~LA 440 (522)
....+.||++|+.. ..+.+.|..|+. ..|++|+.. .++...|+..++..... ...++ +..|.
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLK 345 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 11236677777654 245567777774 356666654 45666677666543211 01222 33333
Q ss_pred HHcCCCcHHHHHHHHHHHHHHH
Q 009911 441 RRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 441 ~~t~Gys~~dI~~lv~~A~~~a 462 (522)
...=--+-++|.++++.|...+
T Consensus 346 ~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 346 QLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred hCCCCChHHHHHHHHHHHHHhC
Confidence 3321124578888888877654
No 251
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.26 E-value=4e-06 Score=90.03 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=98.6
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhh---
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWR--- 312 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~--- 312 (522)
|-.|.|++.+|.-|...+.--...... .+.. +..-+|+|+|.||+||+-+.+++|..+...++.....+......
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 345889999999887765432211111 1111 22348999999999999999999999876666543222111100
Q ss_pred -chhHHHHHHHHHHH--HhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC--CCCC-CCCCcceEEEE
Q 009911 313 -GESERMVRCLFDLA--RAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN--TGTN-EDGSRKIVMVL 386 (522)
Q Consensus 313 -g~~e~~l~~~f~~a--~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~--~~~~-~~~~~~~VivI 386 (522)
.+.+ .-.-.++.- .....+|..|||+|++-.+. +..|+..|+.-.. ...+ ...-+...-||
T Consensus 423 vkD~e-sgdf~iEAGALmLADnGICCIDEFDKMd~~d------------qvAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 423 VKDEE-SGDFTIEAGALMLADNGICCIDEFDKMDVKD------------QVAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred EecCC-CCceeeecCcEEEccCceEEechhcccChHh------------HHHHHHHHHhheehheecceEEeecchhhhh
Confidence 0000 000000000 01124799999999985321 2445555553211 0000 00001124578
Q ss_pred eecCCCC-------------CccHHHHhhcccc-cccCCCCHHHHHHHHHHHHcc
Q 009911 387 AATNFPW-------------DIDEALRRRLEKR-IYIPLPNFESRKELIKINLKT 427 (522)
Q Consensus 387 attn~p~-------------~ld~aL~rRf~~~-i~i~~Pd~~~R~~Ilk~~l~~ 427 (522)
|++|... .+++++++||+.+ |.+..|++..-..|-++.+..
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 8888652 5779999999844 456788887777777666643
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.23 E-value=1.1e-05 Score=73.33 Aligned_cols=72 Identities=28% Similarity=0.392 Sum_probs=46.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh----------------------hc--hhHHHHHHHHHHH
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW----------------------RG--ESERMVRCLFDLA 326 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~----------------------~g--~~e~~l~~~f~~a 326 (522)
++|+|+||+|||+++..++..+ +.+++.++........ .. ........+...+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 4556655543221100 00 0111122334455
Q ss_pred HhhCCcEEEEechhhhhhc
Q 009911 327 RAYAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 327 ~~~~p~VL~IDEiD~l~~~ 345 (522)
....+.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5667899999999988643
No 253
>PF05729 NACHT: NACHT domain
Probab=98.22 E-value=2e-05 Score=71.92 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=72.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---------cEEEeehhhhhhhh------------hchhHHHHHH-HHHHHHhhC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT---------TFFNVSSATLASKW------------RGESERMVRC-LFDLARAYA 330 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~---------~~i~v~~~~l~~~~------------~g~~e~~l~~-~f~~a~~~~ 330 (522)
-++|+|++|+|||++++.++..+.. .++.+.+......- .......+.. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 5899999999999999999987721 22333333322110 0000111111 112223345
Q ss_pred CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcc--cccc
Q 009911 331 PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLE--KRIY 408 (522)
Q Consensus 331 p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~--~~i~ 408 (522)
..+|+||.+|.+...... .........|...+..... ..+-++.|++. ..... +.+.+. ..+.
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~~~~---------~~~~liit~r~-~~~~~-~~~~~~~~~~~~ 146 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQALP---------PGVKLIITSRP-RAFPD-LRRRLKQAQILE 146 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhhccC---------CCCeEEEEEcC-ChHHH-HHHhcCCCcEEE
Confidence 678999999998753211 1112222223233332111 11334434332 22211 444333 3578
Q ss_pred cCCCCHHHHHHHHHHHHcc
Q 009911 409 IPLPNFESRKELIKINLKT 427 (522)
Q Consensus 409 i~~Pd~~~R~~Ilk~~l~~ 427 (522)
++..+.++..++++.++..
T Consensus 147 l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 147 LEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred ECCCCHHHHHHHHHHHhhc
Confidence 8888999999999987753
No 254
>PRK15115 response regulator GlrR; Provisional
Probab=98.20 E-value=3.6e-05 Score=82.67 Aligned_cols=171 Identities=22% Similarity=0.262 Sum_probs=96.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchhHHHHHHHHHHH---------------HhhCCcE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGESERMVRCLFDLA---------------RAYAPST 333 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a---------------~~~~p~V 333 (522)
..|+|+|++||||+++|+++.... +.+|+.++|..+..... -..+|..+ .....++
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 379999999999999999998875 47999999987643211 11122111 1123479
Q ss_pred EEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEEEeecCCC-------CCccHHHHhhccc
Q 009911 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKIVMVLAATNFP-------WDIDEALRRRLEK 405 (522)
Q Consensus 334 L~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~VivIattn~p-------~~ld~aL~rRf~~ 405 (522)
|||||||.|. ..++..|+..++.-.... +........+.||++|+.. ..+.+.|..|+.
T Consensus 232 l~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~- 298 (444)
T PRK15115 232 LFLDEIGDMP------------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLN- 298 (444)
T ss_pred EEEEccccCC------------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhc-
Confidence 9999998874 345677777776432110 0001112247788888753 123344555553
Q ss_pred ccccCCCCHHHHH----HHHHHHHccC----C-C---CCcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009911 406 RIYIPLPNFESRK----ELIKINLKTV----E-V---SKDVDIDEVARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 406 ~i~i~~Pd~~~R~----~Ilk~~l~~~----~-l---~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
.+.+..|...+|. .|++.++... . . ..+..+..|....=.-..++|.++++.|...
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 4555566655553 3445554332 1 0 1122234444433123566777777766543
No 255
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.19 E-value=2.3e-05 Score=84.00 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=51.2
Q ss_pred CChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 216 PDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 216 ~~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.++++.+++-..+... |.|+.++|..+..++.--.....-.+..-+---+|||+|.|||||+-+.+++++..
T Consensus 435 kd~~i~~rIiaSiaPs--------IyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 435 KDPPIKERIIASIAPS--------IYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred cCccHHHHHHHhhCch--------hhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC
Confidence 4555666655555443 88999999998776643221111111111222479999999999999999999887
Q ss_pred CCcEEE
Q 009911 296 GTTFFN 301 (522)
Q Consensus 296 g~~~i~ 301 (522)
...++.
T Consensus 507 ~RAV~t 512 (854)
T KOG0477|consen 507 PRAVFT 512 (854)
T ss_pred cceeEe
Confidence 665554
No 256
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.18 E-value=3.1e-05 Score=75.77 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=73.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCch
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEH 352 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~ 352 (522)
+..++||.|||||..++.+|+.+|..++.++|++..+ ...+.++|.-+... .+-+++||++.|- .
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~--------~ 98 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLS--------E 98 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS--------H
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhhh--------H
Confidence 7789999999999999999999999999999987543 23466666544443 3789999998774 2
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCC------CCCCcceEEEEeecCC----CCCccHHHHhhcccccccCCCCHHHHHHHH
Q 009911 353 ESSRRVKSELLVQVDGVNNTGTN------EDGSRKIVMVLAATNF----PWDIDEALRRRLEKRIYIPLPNFESRKELI 421 (522)
Q Consensus 353 ~~~~~~~~~Ll~~ld~~~~~~~~------~~~~~~~VivIattn~----p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Il 421 (522)
+....+-..+....+.+...... ...-...+-++.|.|. ...+++.|+.-| +.+.+-.||.....+++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 22222222222222221111100 0000111335555553 258889999888 78999999987665554
No 257
>PHA00729 NTP-binding motif containing protein
Probab=98.15 E-value=2.9e-05 Score=75.21 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.+++|+|+||||||+||.+|+..++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 389999999999999999999998633
No 258
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.10 E-value=1.1e-05 Score=69.25 Aligned_cols=24 Identities=42% Similarity=0.814 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
|+|+||||+|||++|+.||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999988753
No 259
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.09 E-value=6e-06 Score=93.98 Aligned_cols=210 Identities=16% Similarity=0.126 Sum_probs=128.7
Q ss_pred hhhhccCCCCCcccccCcHHHHHHHHHHHhccCc-ChhhhhccCC--CCc-eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLW-MPEYFQGIRR--PWK-GVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~-~~~~~~~~~~--~~~-~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
..+.+++.+....++.|.......+.+.+...-. .+..|..... ..+ .+|++||||+|||+.+.++|.++|..+++
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 4677788888888888877777677766654211 1111222111 112 36999999999999999999999999999
Q ss_pred eehhhhhhhhhchh-------HHHHHHHH---HHHHh-hCC-cEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhc
Q 009911 302 VSSATLASKWRGES-------ERMVRCLF---DLARA-YAP-STIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGV 369 (522)
Q Consensus 302 v~~~~l~~~~~g~~-------e~~l~~~f---~~a~~-~~p-~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~ 369 (522)
.+++...+++.... ...+...| ..... ... .||++||+|.++.. .+..+..+...+...
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~---------dRg~v~~l~~l~~ks 458 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE---------DRGGVSKLSSLCKKS 458 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch---------hhhhHHHHHHHHHhc
Confidence 99987665433221 11122222 00000 012 28999999988741 122333343333311
Q ss_pred CCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC-CCCcccHHHHHHHcCCCcH
Q 009911 370 NNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE-VSKDVDIDEVARRTDGYSG 448 (522)
Q Consensus 370 ~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~-l~~~~dl~~LA~~t~Gys~ 448 (522)
.+.||+++|...........+....++|+.|+...+..-+...+.... ...+-.++++...+ +
T Consensus 459 ------------~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~ 522 (871)
T KOG1968|consen 459 ------------SRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----G 522 (871)
T ss_pred ------------cCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----c
Confidence 156888999887666544455446899999999887766665554322 22334466666654 6
Q ss_pred HHHHHHHHHHHH
Q 009911 449 DDLTNVCRDASL 460 (522)
Q Consensus 449 ~dI~~lv~~A~~ 460 (522)
+||++++..-.+
T Consensus 523 ~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 523 GDIRQIIMQLQF 534 (871)
T ss_pred cCHHHHHHHHhh
Confidence 688887764433
No 260
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.06 E-value=2e-06 Score=88.79 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=84.5
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh----h--------
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT----L-------- 307 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~----l-------- 307 (522)
|.|++.+|..|.-.+.........-....+..-+|||+|.||||||.|.+.+++.....++...... |
T Consensus 26 i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~ 105 (331)
T PF00493_consen 26 IYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDP 105 (331)
T ss_dssp TTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCG
T ss_pred CcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecccc
Confidence 8899998887754443221110000011133358999999999999999998876654443322111 1
Q ss_pred -hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC--CCC-CCCCCcceE
Q 009911 308 -ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN--TGT-NEDGSRKIV 383 (522)
Q Consensus 308 -~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~--~~~-~~~~~~~~V 383 (522)
.+.|.-+.. .+-.| ..+|++|||+|.+-. .....|+..|+.-.. ... -...-....
T Consensus 106 ~~~~~~leaG-----alvla---d~GiccIDe~dk~~~------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 106 VTGEWVLEAG-----ALVLA---DGGICCIDEFDKMKE------------DDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp GTSSECEEE------HHHHC---TTSEEEECTTTT--C------------HHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred ccceeEEeCC-----chhcc---cCceeeecccccccc------------hHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 111111111 12222 348999999998742 124667777774211 100 000012335
Q ss_pred EEEeecCCCC-------------CccHHHHhhccccccc-CCCCHHHHHHHHHHHHcc
Q 009911 384 MVLAATNFPW-------------DIDEALRRRLEKRIYI-PLPNFESRKELIKINLKT 427 (522)
Q Consensus 384 ivIattn~p~-------------~ld~aL~rRf~~~i~i-~~Pd~~~R~~Ilk~~l~~ 427 (522)
-|+|++|... .+++.|++||+..+.+ ..++.+.-..|.++.+..
T Consensus 166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 7899988654 4668999999977655 667777666677766644
No 261
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.04 E-value=0.0002 Score=75.15 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=54.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH--h--CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE--C--GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG 347 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~--l--g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~ 347 (522)
.++++.||+|||||+|+.+++.. + | -.++...|...... ..+ .......+|+|||+..+.-.
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~l--g~v~~~DlLI~DEvgylp~~-- 275 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQI--GLVGRWDVVAFDEVATLKFA-- 275 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHH--hhhccCCEEEEEcCCCCcCC--
Confidence 49999999999999999998776 2 3 22333343322111 111 11234589999999764321
Q ss_pred CCCchhhHHHHHHHHHHHhhhcC-CCCCCCCCCcceEEEEeecCC
Q 009911 348 ASGEHESSRRVKSELLVQVDGVN-NTGTNEDGSRKIVMVLAATNF 391 (522)
Q Consensus 348 ~~~~~~~~~~~~~~Ll~~ld~~~-~~~~~~~~~~~~VivIattn~ 391 (522)
.....+..|-..|+.-. ..+........-+++++-+|.
T Consensus 276 ------~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 276 ------KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred ------chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 22334555666665322 222111112333666666653
No 262
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00025 Score=69.21 Aligned_cols=181 Identities=16% Similarity=0.221 Sum_probs=105.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeehhhhhh-----hh----hch--------hHHHHHHHHHHHH-hhCC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT---TFFNVSSATLAS-----KW----RGE--------SERMVRCLFDLAR-AYAP 331 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~~~l~~-----~~----~g~--------~e~~l~~~f~~a~-~~~p 331 (522)
-+.++|+-|+|||+++|++...++- .++.++...+.. -+ ... .+..-+.+..... ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 5779999999999999977766642 233444333221 11 111 1111122222222 3456
Q ss_pred cEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc----HHHHhhccccc
Q 009911 332 STIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID----EALRRRLEKRI 407 (522)
Q Consensus 332 ~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld----~aL~rRf~~~i 407 (522)
.++++||++.+... .+..|. .+.+...... ..-.|++|+=..-...+- ..+..|+...|
T Consensus 133 v~l~vdEah~L~~~------------~le~Lr-ll~nl~~~~~----~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~ 195 (269)
T COG3267 133 VVLMVDEAHDLNDS------------ALEALR-LLTNLEEDSS----KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRI 195 (269)
T ss_pred eEEeehhHhhhChh------------HHHHHH-HHHhhccccc----CceeeeecCCcccchhhchHHHHhhhheEEEEE
Confidence 89999999887532 112221 1111111111 112255555432222111 34444887779
Q ss_pred ccCCCCHHHHHHHHHHHHccCC----CCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCC
Q 009911 408 YIPLPNFESRKELIKINLKTVE----VSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKT 471 (522)
Q Consensus 408 ~i~~Pd~~~R~~Ilk~~l~~~~----l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~ 471 (522)
.+++.+.++-..+++..++.-. +.++..+..+...+.|| +.-|.++|..|...++......++
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~a~~~~v~ 262 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYSAGEDGVS 262 (269)
T ss_pred ecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999988888888886543 33444577888999985 677999999998888876644433
No 263
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.99 E-value=0.00016 Score=86.71 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=51.1
Q ss_pred hhHHHHHhhhhhccC---CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 009911 218 PDLAAMLERDVLETS---PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 218 ~~~~e~~~~~~~~~~---~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~ 294 (522)
.++.+.+-.++..+. +...+++++|+++..+.|...+.+. ....+-|-|+|++|+||||||+++++.
T Consensus 161 ~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~ 230 (1153)
T PLN03210 161 AKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSR 230 (1153)
T ss_pred HHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHH
Confidence 345555555555443 4567889999999999998876431 122356889999999999999999888
Q ss_pred hCC
Q 009911 295 CGT 297 (522)
Q Consensus 295 lg~ 297 (522)
+..
T Consensus 231 l~~ 233 (1153)
T PLN03210 231 LSR 233 (1153)
T ss_pred Hhh
Confidence 744
No 264
>PF14516 AAA_35: AAA-like domain
Probab=97.98 E-value=0.0004 Score=71.78 Aligned_cols=174 Identities=19% Similarity=0.201 Sum_probs=95.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhch-------------------------------
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGE------------------------------- 314 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~------------------------------- 314 (522)
.++..+.|.||..+|||+|...+.+.+ |...+.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 345689999999999999999987666 6677777765432110000
Q ss_pred hHHHHHHHHHHH---HhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC
Q 009911 315 SERMVRCLFDLA---RAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF 391 (522)
Q Consensus 315 ~e~~l~~~f~~a---~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~ 391 (522)
....+...|+.. ....|-||+|||||.++... .+...|+..+................+++++.+..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~----------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~ 178 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP----------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTE 178 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc----------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcc
Confidence 011122223221 12357799999999997431 12234444444433322111112223344444332
Q ss_pred CCCccHHH-Hh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 392 PWDIDEAL-RR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 392 p~~ld~aL-~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
+... ... .+ -+...|.++..+.++-..+++.+-.. ... ..++.|-..+.|... =+..+|..
T Consensus 179 ~~~~-~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~-~~~~~l~~~tgGhP~-Lv~~~~~~ 242 (331)
T PF14516_consen 179 DYII-LDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQ-EQLEQLMDWTGGHPY-LVQKACYL 242 (331)
T ss_pred cccc-cCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCH-HHHHHHHHHHCCCHH-HHHHHHHH
Confidence 2211 111 11 22456788888999988888876433 222 238889999999754 24444543
No 265
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.98 E-value=0.0003 Score=70.96 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=89.9
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHH---HHhCCcEEEeeh--hhhhhh----
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVA---TECGTTFFNVSS--ATLASK---- 310 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA---~~lg~~~i~v~~--~~l~~~---- 310 (522)
+.|..+-.+.|.+++..-. . ..-.++|++.||.|+|||+|....- ++.|-.|+.+.. .-..++
T Consensus 26 l~g~~~~~~~l~~~lkqt~-----~---~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTI-----L---HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred eeehHHHHHHHHHHHHHHH-----H---hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHH
Confidence 7787777776666654311 1 1223589999999999999776653 356666665543 211111
Q ss_pred ---------------hhchhHHHHHHHHHHHHh-----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC
Q 009911 311 ---------------WRGESERMVRCLFDLARA-----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN 370 (522)
Q Consensus 311 ---------------~~g~~e~~l~~~f~~a~~-----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~ 370 (522)
..|.....+..++..... ..+.|.++||||.+++.. ++ .-|.+.+|-..
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------rQ--tllYnlfDisq 166 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------RQ--TLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------hh--HHHHHHHHHHh
Confidence 111122223333332221 123355577999876432 11 22334444332
Q ss_pred CCCCCCCCCcceEEEEeecCCCC---CccHHHHhhcccc-cccCC-CCHHHHHHHHHHHH
Q 009911 371 NTGTNEDGSRKIVMVLAATNFPW---DIDEALRRRLEKR-IYIPL-PNFESRKELIKINL 425 (522)
Q Consensus 371 ~~~~~~~~~~~~VivIattn~p~---~ld~aL~rRf~~~-i~i~~-Pd~~~R~~Ilk~~l 425 (522)
.. ...+.||+.|.+.+ .+...+.+||.+. |+++. ....+...+++..+
T Consensus 167 s~-------r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 167 SA-------RAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred hc-------CCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 21 23377777776654 5568889999766 66644 45788888888776
No 266
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.96 E-value=9.7e-05 Score=74.26 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH--hCCc---EEEeehhh----------hhhhh---------hchhHHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATE--CGTT---FFNVSSAT----------LASKW---------RGESERMVRCLFDL 325 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~--lg~~---~i~v~~~~----------l~~~~---------~g~~e~~l~~~f~~ 325 (522)
..+-|.|+|++|+|||+||..+++. .... ++.++... +.... ....+.....+.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4467999999999999999999988 4332 22222211 11110 01123333344433
Q ss_pred HHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhccc
Q 009911 326 ARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEK 405 (522)
Q Consensus 326 a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~ 405 (522)
.. ..+++|+||+++... ....+...+.... ....||.||.... +-..+... ..
T Consensus 98 L~-~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~----------~~~kilvTTR~~~-v~~~~~~~-~~ 150 (287)
T PF00931_consen 98 LK-DKRCLLVLDDVWDEE--------------DLEELREPLPSFS----------SGSKILVTTRDRS-VAGSLGGT-DK 150 (287)
T ss_dssp HC-CTSEEEEEEEE-SHH--------------HH-------HCHH----------SS-EEEEEESCGG-GGTTHHSC-EE
T ss_pred hc-cccceeeeeeecccc--------------ccccccccccccc----------ccccccccccccc-cccccccc-cc
Confidence 33 348999999996532 1122222221111 1134566666532 21111111 35
Q ss_pred ccccCCCCHHHHHHHHHHHHccCC----CCCcccHHHHHHHcCCCcHHHHHHH
Q 009911 406 RIYIPLPNFESRKELIKINLKTVE----VSKDVDIDEVARRTDGYSGDDLTNV 454 (522)
Q Consensus 406 ~i~i~~Pd~~~R~~Ilk~~l~~~~----l~~~~dl~~LA~~t~Gys~~dI~~l 454 (522)
.+.+...+.++-.++|........ .........|++.+.|+.. .|..+
T Consensus 151 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~ 202 (287)
T PF00931_consen 151 VIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL-ALKLI 202 (287)
T ss_dssp EEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH-HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 788999999999999998764433 1112235689999987543 34444
No 267
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.96 E-value=8.5e-05 Score=75.26 Aligned_cols=159 Identities=25% Similarity=0.343 Sum_probs=95.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHH-hccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAV-VLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL 307 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v-~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l 307 (522)
.....|+.|++.....+.+.+.. .+.+ -.-.+||.|.+||||-++|++..... ..+|+.++|..+
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 35567788888665555444432 2111 11269999999999999999876554 579999999876
Q ss_pred hhhhh-----chh--HHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCC
Q 009911 308 ASKWR-----GES--ERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGS 379 (522)
Q Consensus 308 ~~~~~-----g~~--e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~ 379 (522)
-.... |.. ..--..+|+.|.. +.+|+|||- +.+.+++..||..+..-.-.. +.+..-
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIg------------EmSp~lQaKLLRFL~DGtFRRVGee~Ev 331 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIG------------EMSPRLQAKLLRFLNDGTFRRVGEDHEV 331 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhh------------hcCHHHHHHHHHHhcCCceeecCCcceE
Confidence 53311 111 0112346666554 789999994 456778888888775322111 111111
Q ss_pred cceEEEEeecCCC-------CCccHHHHhhcccccccCCCCHHHH
Q 009911 380 RKIVMVLAATNFP-------WDIDEALRRRLEKRIYIPLPNFESR 417 (522)
Q Consensus 380 ~~~VivIattn~p-------~~ld~aL~rRf~~~i~i~~Pd~~~R 417 (522)
.-.|-|||+|..+ ..+-+.|.-|+. ++.+..|-..+|
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer 375 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRER 375 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccC
Confidence 2347899999765 233456666774 555555544443
No 268
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.93 E-value=8.1e-05 Score=71.47 Aligned_cols=76 Identities=18% Similarity=0.363 Sum_probs=49.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh-hhhh----------------------chhHHHHHHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA-SKWR----------------------GESERMVRCL 322 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~-~~~~----------------------g~~e~~l~~~ 322 (522)
....-++|+||||+|||+++..++... +..++.++...+. ..+. .+....+..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 89 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKT 89 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHH
Confidence 444678999999999999999988654 5567777664311 0000 0111224444
Q ss_pred HHHHHhhCCcEEEEechhhhhh
Q 009911 323 FDLARAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 323 f~~a~~~~p~VL~IDEiD~l~~ 344 (522)
...+....+.+|+||-|..+..
T Consensus 90 ~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 90 SKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHhhcCccEEEEeCcHHHhH
Confidence 4445555789999999998864
No 269
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4e-05 Score=86.87 Aligned_cols=139 Identities=22% Similarity=0.331 Sum_probs=97.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHh-hCCcEEEEec
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC----------GTTFFNVSSATLA--SKWRGESERMVRCLFDLARA-YAPSTIFIDE 338 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l----------g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~-~~p~VL~IDE 338 (522)
++-+|+|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+..++.+...+.. ....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 688999999999999999999887 3355666665444 46788999999999988874 3456889999
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC-----CCccHHHHhhcccccccCCCC
Q 009911 339 IDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPN 413 (522)
Q Consensus 339 iD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p-----~~ld~aL~rRf~~~i~i~~Pd 413 (522)
++-+.+.....+ ..-...+|+.+-.. ..+.+|+||..- -+-+|+|-+||+ .+.++.|+
T Consensus 289 lh~lvg~g~~~~-----~~d~~nlLkp~L~r-----------g~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS 351 (898)
T KOG1051|consen 289 LHWLVGSGSNYG-----AIDAANLLKPLLAR-----------GGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPS 351 (898)
T ss_pred eeeeecCCCcch-----HHHHHHhhHHHHhc-----------CCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCc
Confidence 998876543311 11112233333221 116777766532 255799999996 78999999
Q ss_pred HHHHHHHHHHHHcc
Q 009911 414 FESRKELIKINLKT 427 (522)
Q Consensus 414 ~~~R~~Ilk~~l~~ 427 (522)
.+....||......
T Consensus 352 ~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 352 VENLSLILPGLSER 365 (898)
T ss_pred ccchhhhhhhhhhh
Confidence 88877777765544
No 270
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.91 E-value=0.00015 Score=77.78 Aligned_cols=170 Identities=22% Similarity=0.247 Sum_probs=92.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchhHHHHHHHHHH---------------HHhhCCcE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGESERMVRCLFDL---------------ARAYAPST 333 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~---------------a~~~~p~V 333 (522)
..++++|.+||||+++|+++.... +.+|+.++|..+..... -..+|.. ......++
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 589999999999999999997665 46899999987542211 1111211 01223579
Q ss_pred EEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEEEeecCCC-------CCccHHHHhhccc
Q 009911 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKIVMVLAATNFP-------WDIDEALRRRLEK 405 (522)
Q Consensus 334 L~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~VivIattn~p-------~~ld~aL~rRf~~ 405 (522)
|||||||.|.. .++..|+..++.-.... +........+.+|++|+.. ..+...|..|+.
T Consensus 237 l~ldei~~l~~------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~- 303 (441)
T PRK10365 237 LFLDEIGDISP------------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN- 303 (441)
T ss_pred EEEeccccCCH------------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-
Confidence 99999988752 34566776665422110 0000111235677776653 134455555663
Q ss_pred ccccCCCCHHHH----HHHHHHHHccCC----C-CCccc---HHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 406 RIYIPLPNFESR----KELIKINLKTVE----V-SKDVD---IDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 406 ~i~i~~Pd~~~R----~~Ilk~~l~~~~----l-~~~~d---l~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
.+.+..|...+| ..+++.++.... . ...++ +..|....=.-..++|.++++.|+.
T Consensus 304 ~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 455555555544 445555554321 0 01122 3333332211245666666666554
No 271
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.91 E-value=0.00089 Score=71.49 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
.+..++|+|++|+||||++..+|..+ |..+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45689999999999999999999877 4455555543
No 272
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.87 E-value=0.00014 Score=76.59 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=51.3
Q ss_pred ChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 217 DPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.+++.|.+.+.|... |.|.+++|+.+..++..- ....+-.+.. +-.-+|||.|.|||.|+-|.+.+-+-.
T Consensus 318 ~~d~Ye~is~sIAPS--------IfG~~DiKkAiaClLFgG-srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs 388 (729)
T KOG0481|consen 318 SPDVYERISKSIAPS--------IFGHEDIKKAIACLLFGG-SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS 388 (729)
T ss_pred CccHHHHHhhccCch--------hcCchhHHHHHHHHhhcC-ccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC
Confidence 456777777766554 889999999998766321 1111212222 223489999999999999999987766
Q ss_pred CCcEEE
Q 009911 296 GTTFFN 301 (522)
Q Consensus 296 g~~~i~ 301 (522)
..-++.
T Consensus 389 PIaVYT 394 (729)
T KOG0481|consen 389 PIAVYT 394 (729)
T ss_pred ceEEEe
Confidence 555543
No 273
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.86 E-value=4.8e-05 Score=73.72 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=53.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh--hhhh--------hhchhHHHHHHHHHHHH--hhCCcEEEE
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT--LASK--------WRGESERMVRCLFDLAR--AYAPSTIFI 336 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~--l~~~--------~~g~~e~~l~~~f~~a~--~~~p~VL~I 336 (522)
+.+..+||||+||+|||++|+.++.. ..++..+... +.+. -...+-..+...+.... .....+|+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 43467999999999999999999732 3333333321 1100 00111112222333222 233579999
Q ss_pred echhhhhh------ccC-CC--CchhhHHHHHHHHHHHhhhcCC
Q 009911 337 DEIDSLCN------ARG-AS--GEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 337 DEiD~l~~------~~~-~~--~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
|.|+.+.. .+. .. ........+...|+..|..+..
T Consensus 88 DsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~ 131 (220)
T TIGR01618 88 DNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE 131 (220)
T ss_pred ecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 99998764 111 11 1222334455566666665543
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.86 E-value=0.00019 Score=65.32 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..++++|+||+||||++..++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 479999999999999999999887
No 275
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.84 E-value=0.00022 Score=66.91 Aligned_cols=71 Identities=27% Similarity=0.365 Sum_probs=44.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhh------c-------------------------hhH---
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWR------G-------------------------ESE--- 316 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~------g-------------------------~~e--- 316 (522)
+|++||||||||+|+..++... |..++.++.......+. | ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887654 55666555321111000 0 000
Q ss_pred HHHHHHHHHHHhhCCcEEEEechhhhhh
Q 009911 317 RMVRCLFDLARAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 317 ~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 344 (522)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444555567899999999988764
No 276
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.81 E-value=0.00021 Score=76.72 Aligned_cols=99 Identities=26% Similarity=0.360 Sum_probs=61.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhh------ch--------hHHHHHHHHHHHHhhCC
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWR------GE--------SERMVRCLFDLARAYAP 331 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~------g~--------~e~~l~~~f~~a~~~~p 331 (522)
.+..-+||+|+||+|||+|+..+|... +..+++++..+...... |. .+..+..++.......|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 344578999999999999999998766 56777777543222111 10 11224556666667789
Q ss_pred cEEEEechhhhhhccCC--CCchhhHHHHHHHHHHHhh
Q 009911 332 STIFIDEIDSLCNARGA--SGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 332 ~VL~IDEiD~l~~~~~~--~~~~~~~~~~~~~Ll~~ld 367 (522)
.+|+||+|..+....-. .+.....+.+...|.....
T Consensus 158 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak 195 (446)
T PRK11823 158 DLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK 195 (446)
T ss_pred CEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999988653211 2222233444445554443
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.79 E-value=0.00026 Score=74.14 Aligned_cols=99 Identities=24% Similarity=0.349 Sum_probs=60.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhh------ch--------hHHHHHHHHHHHHhhCC
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWR------GE--------SERMVRCLFDLARAYAP 331 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~------g~--------~e~~l~~~f~~a~~~~p 331 (522)
.+..-+||+|+||+|||+|+..+|..+ +..+++++......... +. .+..+..+++......|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 344578999999999999999998765 34676666432211100 10 12234556666677789
Q ss_pred cEEEEechhhhhhccC--CCCchhhHHHHHHHHHHHhh
Q 009911 332 STIFIDEIDSLCNARG--ASGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 332 ~VL~IDEiD~l~~~~~--~~~~~~~~~~~~~~Ll~~ld 367 (522)
.+|+||+|..+..... ..+.....+.+...|.....
T Consensus 160 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 160 DLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred cEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998864321 12222333444455544443
No 278
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.79 E-value=0.00032 Score=71.42 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=26.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
..+++|+.|||+-|+|||+|...+...+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 457799999999999999999999988754
No 279
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.74 E-value=0.0011 Score=66.18 Aligned_cols=96 Identities=25% Similarity=0.241 Sum_probs=60.4
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeehhh-------h
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG-----TTFFNVSSAT-------L 307 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-----~~~i~v~~~~-------l 307 (522)
|.|+.-+++.+..++...+..+ ..+.+--+=|+|++||||.++++.||+-+- .+++..-..+ -
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~-----~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ 158 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP-----NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASK 158 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC-----CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHH
Confidence 7888888888888775533222 112222345789999999999999998872 2222111111 1
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhh
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLC 343 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~ 343 (522)
...|. ++....+...++.++.+++++||+|+|-
T Consensus 159 ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 159 IEDYK---EELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHH---HHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 11222 2333445566667888999999999984
No 280
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.73 E-value=3.1e-05 Score=67.37 Aligned_cols=31 Identities=35% Similarity=0.723 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
|+|.|+||+||||+|+.+|..+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988877765
No 281
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.72 E-value=3.9e-05 Score=75.66 Aligned_cols=135 Identities=24% Similarity=0.334 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH------HHhCCcEEEeehhhhhhhhhch-hHHHHHHHHHHHH--------hhCCcEEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA------TECGTTFFNVSSATLASKWRGE-SERMVRCLFDLAR--------AYAPSTIFI 336 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA------~~lg~~~i~v~~~~l~~~~~g~-~e~~l~~~f~~a~--------~~~p~VL~I 336 (522)
..+||.||.|.||++||+.|- +.+..+|++|+|.++.+...-. .-..++..|.-|+ .....+||+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 479999999999999999984 4567899999999885431100 0001122222111 223469999
Q ss_pred echhhhhhccCCCCchhhHHHHHHHHHHHhhhc--CCCCCCCCCCcceEEEEeecCCC------CCccHHHHhhcccccc
Q 009911 337 DEIDSLCNARGASGEHESSRRVKSELLVQVDGV--NNTGTNEDGSRKIVMVLAATNFP------WDIDEALRRRLEKRIY 408 (522)
Q Consensus 337 DEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~--~~~~~~~~~~~~~VivIattn~p------~~ld~aL~rRf~~~i~ 408 (522)
|||..|... -+..||+.|+.- ...+.......+.-+|.+|.... ...-+.|.-|+. ...
T Consensus 289 deigelgad------------eqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arin-lwt 355 (531)
T COG4650 289 DEIGELGAD------------EQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN-LWT 355 (531)
T ss_pred HhhhhcCcc------------HHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhh-eee
Confidence 999776532 235677777643 23222222233333444443321 122344444553 455
Q ss_pred cCCCCHHHHHH
Q 009911 409 IPLPNFESRKE 419 (522)
Q Consensus 409 i~~Pd~~~R~~ 419 (522)
|.+|...+|.+
T Consensus 356 f~lpgl~qr~e 366 (531)
T COG4650 356 FTLPGLRQRQE 366 (531)
T ss_pred eeccccccCcc
Confidence 56665555543
No 282
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.71 E-value=0.0004 Score=67.53 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=47.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh----hhhc-------------------hhHHHHHHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS----KWRG-------------------ESERMVRCL 322 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~----~~~g-------------------~~e~~l~~~ 322 (522)
....-++|+|+||+|||+++..+|..+ +..++.++...+.. ...+ +....+..+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKA 100 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHH
Confidence 344568999999999999999998755 66677776652110 0000 001112222
Q ss_pred HHHHHhhCCcEEEEechhhhhhc
Q 009911 323 FDLARAYAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 323 f~~a~~~~p~VL~IDEiD~l~~~ 345 (522)
..... ..+.+|+||.+..++..
T Consensus 101 ~~~~~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 101 EKLAK-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHH-hcccEEEEeCcHHHhHH
Confidence 22222 57899999999988743
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.69 E-value=6.2e-05 Score=81.56 Aligned_cols=72 Identities=19% Similarity=0.375 Sum_probs=51.6
Q ss_pred HHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-CcEEE
Q 009911 223 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG-TTFFN 301 (522)
Q Consensus 223 ~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-~~~i~ 301 (522)
...+..+..|+. |+|+.|++++++.+.+++... ..++....+-++|.||||+|||+||+.||+.+. .+++.
T Consensus 63 if~~~~i~ry~f--F~d~yGlee~ieriv~~l~~A------a~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~ 134 (644)
T PRK15455 63 IFSNRVIKRYPA--FEEFYGMEEAIEQIVSYFRHA------AQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYV 134 (644)
T ss_pred hhcccccccccc--hhcccCcHHHHHHHHHHHHHH------HHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCccee
Confidence 334445566653 779999999999999988321 122233335899999999999999999999873 34444
Q ss_pred e
Q 009911 302 V 302 (522)
Q Consensus 302 v 302 (522)
+
T Consensus 135 ~ 135 (644)
T PRK15455 135 L 135 (644)
T ss_pred e
Confidence 4
No 284
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0064 Score=59.32 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=105.3
Q ss_pred CCceEEEEcCCC-CcHHHHHHHHHHHhCC---------cEEEeehhhhh---hhhhchhHHHHHHHHHHHH----hhCCc
Q 009911 270 PWKGVLMFGPPG-TGKTLLAKAVATECGT---------TFFNVSSATLA---SKWRGESERMVRCLFDLAR----AYAPS 332 (522)
Q Consensus 270 ~~~~vLL~GppG-tGKT~LAraiA~~lg~---------~~i~v~~~~l~---~~~~g~~e~~l~~~f~~a~----~~~p~ 332 (522)
-.+..|+.|..+ +||..++..++..+.+ .++.+....-. ++.. .-..++.+...+. .....
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYK 91 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcE
Confidence 346899999998 9999999998887743 23333321100 0001 1223444443332 22346
Q ss_pred EEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCC
Q 009911 333 TIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLP 412 (522)
Q Consensus 333 VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~P 412 (522)
|++|+++|.|.. ...+.||+.+++.... +++|..|..+..+.+.+++||. .+.++.|
T Consensus 92 ViII~~ae~mt~------------~AANALLKtLEEPP~~----------t~fILit~~~~~LLpTIrSRCq-~i~~~~p 148 (263)
T PRK06581 92 VAIIYSAELMNL------------NAANSCLKILEDAPKN----------SYIFLITSRAASIISTIRSRCF-KINVRSS 148 (263)
T ss_pred EEEEechHHhCH------------HHHHHHHHhhcCCCCC----------eEEEEEeCChhhCchhHhhceE-EEeCCCC
Confidence 999999998753 3558999999975533 7788888889999999999994 8999999
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 413 NFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 413 d~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
+...-.+++...+....-. ..++-|.+.+. -...+..... ++.+.-|.|.+
T Consensus 149 ~~~~~~e~~~~~~~p~~~~--~~l~~i~~~~~-~d~~~w~~~~-~~~~~~~~~~~ 199 (263)
T PRK06581 149 ILHAYNELYSQFIQPIADN--KTLDFINRFTT-KDRELWLDFI-DNLLLLMNRIL 199 (263)
T ss_pred CHHHHHHHHHHhccccccc--HHHHHHHHHhh-hhHHHHHHHH-HHHHHHHHHHH
Confidence 9988877777666543322 22333444322 2222233322 44455555554
No 285
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.68 E-value=0.00014 Score=78.92 Aligned_cols=174 Identities=26% Similarity=0.285 Sum_probs=100.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh--CCcEEEeehhhhhhh-----hhchhHHHHHHHHHHHH-----hhCCcEEEEechh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC--GTTFFNVSSATLASK-----WRGESERMVRCLFDLAR-----AYAPSTIFIDEID 340 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l--g~~~i~v~~~~l~~~-----~~g~~e~~l~~~f~~a~-----~~~p~VL~IDEiD 340 (522)
.+||.|.+||||-.++++|-... ..+|+.++|..+... +.|.........+..-+ .-....||+|||.
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIg 417 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIG 417 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhh
Confidence 79999999999999999997665 468999999865432 22221111111111111 0113589999995
Q ss_pred hhhhccCCCCchhhHHHHHHHHHHHhhhcCCC--CCCCCCCcceEEEEeecCCC-------CCccHHHHhhcccccccCC
Q 009911 341 SLCNARGASGEHESSRRVKSELLVQVDGVNNT--GTNEDGSRKIVMVLAATNFP-------WDIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 341 ~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~--~~~~~~~~~~VivIattn~p-------~~ld~aL~rRf~~~i~i~~ 411 (522)
.| ...++..||..+..-.-. +... ..-.|-||++|+.+ ..+-+.|.-|+. .+.|.+
T Consensus 418 d~------------p~~~Qs~LLrVl~e~~v~p~g~~~--~~vdirvi~ath~dl~~lv~~g~fredLyyrL~-~~~i~l 482 (606)
T COG3284 418 DM------------PLALQSRLLRVLQEGVVTPLGGTR--IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLN-AFVITL 482 (606)
T ss_pred hc------------hHHHHHHHHHHHhhCceeccCCcc--eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhc-Ceeecc
Confidence 44 456778888777743211 1111 22347889998875 233355555663 444455
Q ss_pred CCH---HHHHHHHHHHHccCC-----CCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 412 PNF---ESRKELIKINLKTVE-----VSKDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 412 Pd~---~~R~~Ilk~~l~~~~-----l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
|.. .++..+|..++.... +.++.--.-++....| +-++|.++++.++..+
T Consensus 483 P~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~ 540 (606)
T COG3284 483 PPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS 540 (606)
T ss_pred CchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC
Confidence 544 444555555553322 2222212235556666 5678888888776544
No 286
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=9.5e-05 Score=68.75 Aligned_cols=33 Identities=18% Similarity=0.468 Sum_probs=30.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
.|+++||||+||||||+.|+..++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 699999999999999999999999999988754
No 287
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.0021 Score=68.12 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=67.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCch
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEH 352 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~ 352 (522)
-++|+||.+|||||+++.+...+.-.++.++..++....... .. ....+..+.......||||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d-~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LD-LLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HH-HHHHHHHhhccCCceEEEecccCchh--------
Confidence 799999999999999998888886655555544443221111 11 11122222221447999999976521
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC--CCccHHHHhhcccccccCCCCHHHHHH
Q 009911 353 ESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP--WDIDEALRRRLEKRIYIPLPNFESRKE 419 (522)
Q Consensus 353 ~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p--~~ld~aL~rRf~~~i~i~~Pd~~~R~~ 419 (522)
....+-...| ... . .|++.+++... ..+.+.|..|. ..+.+.+.+..+...
T Consensus 109 -----W~~~lk~l~d----~~~-----~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 -----WERALKYLYD----RGN-----L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -----HHHHHHHHHc----ccc-----c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 1111212222 111 0 14444443322 34556777786 577788888888764
No 288
>PHA02624 large T antigen; Provisional
Probab=97.64 E-value=0.00022 Score=77.66 Aligned_cols=124 Identities=21% Similarity=0.241 Sum_probs=70.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC--CC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG--AS 349 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~--~~ 349 (522)
+.+||+||||||||+++.+|++.++..++.+++.+-... |...-.....+++||++-.-+.... ++
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 589999999999999999999999777777875542211 1111111225788888853322100 00
Q ss_pred CchhhHHHHHHHHHHHhhhcCCCC----CCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCC
Q 009911 350 GEHESSRRVKSELLVQVDGVNNTG----TNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 350 ~~~~~~~~~~~~Ll~~ld~~~~~~----~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~ 411 (522)
+.. . .=+..|.+.+||-.... ...........+|.|||. ..|+..+.-||.+.+.|..
T Consensus 500 G~~-~--dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQG-M--NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccc-c--chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000 0 00134556666651110 000001111246667775 6788899999988888753
No 289
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.63 E-value=0.00067 Score=79.70 Aligned_cols=141 Identities=21% Similarity=0.178 Sum_probs=87.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh---hhhh----hhch--hHHHHHH-HHHHHHhhCCcEEEEechhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT---LASK----WRGE--SERMVRC-LFDLARAYAPSTIFIDEIDS 341 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~---l~~~----~~g~--~e~~l~~-~f~~a~~~~p~VL~IDEiD~ 341 (522)
+++||.|.||+|||+|+.++|+.+|-.++.++.++ |+.- .+++ .+-..+. -|-.|.. ...-|++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 58999999999999999999999999999988763 2211 1111 1111111 1222322 236789999953
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHhhhcCCCCC----CCCCCcceEEEEeecCCC------CCccHHHHhhcccccccCC
Q 009911 342 LCNARGASGEHESSRRVKSELLVQVDGVNNTGT----NEDGSRKIVMVLAATNFP------WDIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~----~~~~~~~~VivIattn~p------~~ld~aL~rRf~~~i~i~~ 411 (522)
.+..++.-|-..+|-....-- -.....+++.|+||-|.. ..|+..+..||. ++++..
T Consensus 1623 ------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~ 1689 (4600)
T COG5271 1623 ------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDG 1689 (4600)
T ss_pred ------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEecc
Confidence 233344444444442111000 000122446777777754 368899999995 888888
Q ss_pred CCHHHHHHHHHHHHc
Q 009911 412 PNFESRKELIKINLK 426 (522)
Q Consensus 412 Pd~~~R~~Ilk~~l~ 426 (522)
.+.++...|...+..
T Consensus 1690 lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1690 LTTDDITHIANKMYP 1704 (4600)
T ss_pred cccchHHHHHHhhCC
Confidence 888887777776654
No 290
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00018 Score=68.95 Aligned_cols=71 Identities=25% Similarity=0.426 Sum_probs=46.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--------CcEEEeehh-hhhhhhhchh-------------HHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECG--------TTFFNVSSA-TLASKWRGES-------------ERMVRCLFDLARA 328 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg--------~~~i~v~~~-~l~~~~~g~~-------------e~~l~~~f~~a~~ 328 (522)
|-+.||.||||||||||.+-||+-+. ..+..++-. ++.+-..|.. .-.-..+..+.+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 34899999999999999999998773 334444433 2322222221 1112345566788
Q ss_pred hCCcEEEEechhh
Q 009911 329 YAPSTIFIDEIDS 341 (522)
Q Consensus 329 ~~p~VL~IDEiD~ 341 (522)
+.|.||++|||-.
T Consensus 217 m~PEViIvDEIGt 229 (308)
T COG3854 217 MSPEVIIVDEIGT 229 (308)
T ss_pred cCCcEEEEecccc
Confidence 9999999999953
No 291
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.61 E-value=0.0014 Score=67.66 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=85.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--EEeehhhhhhh-----------h----hchhH----HHHHHHHHHH
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATECGTTF--FNVSSATLASK-----------W----RGESE----RMVRCLFDLA 326 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~--i~v~~~~l~~~-----------~----~g~~e----~~l~~~f~~a 326 (522)
..+++|++|||.-|||||||...+-..+.... -.+....++-. . .+.+. ..+.-+-+..
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 45689999999999999999998876553210 01111111110 0 00000 0011111111
Q ss_pred HhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC-CCccHHHHhhccc
Q 009911 327 RAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP-WDIDEALRRRLEK 405 (522)
Q Consensus 327 ~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p-~~ld~aL~rRf~~ 405 (522)
...-.+|++||+...- -.+....+++...|++ ..|+++||+|+. ++|... -+++
T Consensus 191 -a~ea~lLCFDEfQVTD-----VADAmiL~rLf~~Lf~----------------~GvVlvATSNR~P~dLYkn---GlQR 245 (467)
T KOG2383|consen 191 -AEEAILLCFDEFQVTD-----VADAMILKRLFEHLFK----------------NGVVLVATSNRAPEDLYKN---GLQR 245 (467)
T ss_pred -hhhceeeeechhhhhh-----HHHHHHHHHHHHHHHh----------------CCeEEEEeCCCChHHHhhc---chhh
Confidence 1123689999995421 0112233444444431 128999999975 444422 2334
Q ss_pred ccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcC-C--CcHH-HHHHHHHHHH
Q 009911 406 RIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTD-G--YSGD-DLTNVCRDAS 459 (522)
Q Consensus 406 ~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~-G--ys~~-dI~~lv~~A~ 459 (522)
..++|. ..+|+..+.-..+...+|+...+.-.+ + |.+. |+..++++-.
T Consensus 246 ~~F~Pf------I~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 246 ENFIPF------IALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hhhhhH------HHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 445553 568888888888888899883333222 2 2333 7777776543
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=97.59 E-value=0.0017 Score=67.09 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
+.-++|+|++|+||||++..+|..+ |..+..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4678999999999999888888776 445544544
No 293
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.56 E-value=0.00085 Score=69.96 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
..||+||+|+|||+|++.|++.+..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Confidence 5889999999999999999987743
No 294
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.56 E-value=0.00017 Score=83.66 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=88.2
Q ss_pred hhccCCCCceEEEEcCCCCcHHHH-HHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhC------------
Q 009911 264 FQGIRRPWKGVLMFGPPGTGKTLL-AKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYA------------ 330 (522)
Q Consensus 264 ~~~~~~~~~~vLL~GppGtGKT~L-AraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~------------ 330 (522)
+.......++++++||||+|||+| +.++-.++-..|+.++.+.-. .++..+. +++.-..+-
T Consensus 1487 ~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls-~Ler~t~yy~~tg~~~l~PK~ 1560 (3164)
T COG5245 1487 SNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLS-VLERETEYYPNTGVVRLYPKP 1560 (3164)
T ss_pred HHHHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHH-HHHhhceeeccCCeEEEccCc
Confidence 333445557999999999999995 667778887777777755321 1111222 222111111
Q ss_pred ---CcEEEEechhhhhhccC--CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCc-----cHHHH
Q 009911 331 ---PSTIFIDEIDSLCNARG--ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDI-----DEALR 400 (522)
Q Consensus 331 ---p~VL~IDEiD~l~~~~~--~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~l-----d~aL~ 400 (522)
--|||+|||+ |...+. +...--+.+.++.. .|+.......+..-+++++.++||.+.+. .+.+.
T Consensus 1561 ~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~-----QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~ 1634 (3164)
T COG5245 1561 VVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVER-----QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFI 1634 (3164)
T ss_pred chhheEEEeeccC-CccccccCCCceEEeeHHHHHh-----cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHh
Confidence 1289999998 322211 11111122222211 12333222233345668999999988533 36666
Q ss_pred hhcccccccCCCCHHHHHHHHHHHHcc
Q 009911 401 RRLEKRIYIPLPNFESRKELIKINLKT 427 (522)
Q Consensus 401 rRf~~~i~i~~Pd~~~R~~Ilk~~l~~ 427 (522)
|+- ..+++..|.-.....|...++..
T Consensus 1635 r~~-v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1635 RKP-VFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred cCc-eEEEecCcchhhHHHHHHHHHHH
Confidence 665 57888899999999998877754
No 295
>PRK07261 topology modulation protein; Provisional
Probab=97.55 E-value=0.00016 Score=67.50 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=30.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.|+|+|++|+||||||+.|+..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 5899999999999999999999999988877543
No 296
>PRK13949 shikimate kinase; Provisional
Probab=97.54 E-value=0.00039 Score=64.74 Aligned_cols=32 Identities=38% Similarity=0.615 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
.|+|+|+||+|||++++.+|+.++.+|+..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 79999999999999999999999999988773
No 297
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.51 E-value=0.00036 Score=62.40 Aligned_cols=33 Identities=36% Similarity=0.753 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
|+|+||||+||||+|+.++..++..+ ++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHHH
Confidence 78999999999999999999999444 5544444
No 298
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.50 E-value=0.00011 Score=67.86 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
+..|+|+|+||||||++|+.+|..++.+++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 458999999999999999999999999998655
No 299
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.49 E-value=0.00075 Score=69.07 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh----------------hhchhHHHHHHHHHHHHhhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK----------------WRGESERMVRCLFDLARAYA 330 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~----------------~~g~~e~~l~~~f~~a~~~~ 330 (522)
..+-++|+||||||||+||-.++... |..++.+++...... .....+..+..+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33568899999999999988876554 556666654322110 01112333444444455667
Q ss_pred CcEEEEechhhhhhc
Q 009911 331 PSTIFIDEIDSLCNA 345 (522)
Q Consensus 331 p~VL~IDEiD~l~~~ 345 (522)
+.+|+||-+..+.+.
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999988754
No 300
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.49 E-value=0.00036 Score=69.87 Aligned_cols=68 Identities=28% Similarity=0.361 Sum_probs=43.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC----------cEEEee-hhhhhhhhhchh-------------HHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT----------TFFNVS-SATLASKWRGES-------------ERMVRCLFDLAR 327 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~----------~~i~v~-~~~l~~~~~g~~-------------e~~l~~~f~~a~ 327 (522)
.+++|.||+|+|||||.++++..+.. .+..++ ...+...+.+-. ......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 59999999999999999999988742 222222 122221111110 011234566677
Q ss_pred hhCCcEEEEech
Q 009911 328 AYAPSTIFIDEI 339 (522)
Q Consensus 328 ~~~p~VL~IDEi 339 (522)
.+.|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999997
No 301
>PHA02774 E1; Provisional
Probab=97.49 E-value=0.00045 Score=75.01 Aligned_cols=113 Identities=17% Similarity=0.283 Sum_probs=62.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-eehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFN-VSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG 350 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~-v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~ 350 (522)
++++|+||||||||++|.+|++.++..++. ++..+ .+- ++ .+. ...|++|||+-.-+
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw------Lq----pl~--d~ki~vlDD~t~~~------- 492 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW------LQ----PLA--DAKIALLDDATHPC------- 492 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc------cc----hhc--cCCEEEEecCcchH-------
Confidence 589999999999999999999999755543 55321 110 11 111 22599999992111
Q ss_pred chhhHHHHHHHHHHHhhhcCCC---CCCCCCCcceEEEEeecCCCCCcc---HHHHhhcccccccCC
Q 009911 351 EHESSRRVKSELLVQVDGVNNT---GTNEDGSRKIVMVLAATNFPWDID---EALRRRLEKRIYIPL 411 (522)
Q Consensus 351 ~~~~~~~~~~~Ll~~ld~~~~~---~~~~~~~~~~VivIattn~p~~ld---~aL~rRf~~~i~i~~ 411 (522)
..-+...|...++|-.-. ........+...+|.|||..-.-+ ..|.+|+ ..++|+.
T Consensus 493 ----w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n 554 (613)
T PHA02774 493 ----WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPN 554 (613)
T ss_pred ----HHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCC
Confidence 122223455666654210 000011112245778888543333 4566677 3555543
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.48 E-value=0.0015 Score=63.98 Aligned_cols=75 Identities=15% Similarity=0.328 Sum_probs=47.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh--------------h-------------------h
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK--------------W-------------------R 312 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~--------------~-------------------~ 312 (522)
.....++++|+||+|||+++..++... |..++.++...-... + .
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~ 102 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNS 102 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCc
Confidence 334578999999999999999997553 556666554221110 0 0
Q ss_pred chhHHHHHHHHHHHHhhCCcEEEEechhhhh
Q 009911 313 GESERMVRCLFDLARAYAPSTIFIDEIDSLC 343 (522)
Q Consensus 313 g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~ 343 (522)
...+..+..+........+.+|+||++..+.
T Consensus 103 ~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 103 TLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112334444445555688999999998764
No 303
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.47 E-value=0.0018 Score=63.45 Aligned_cols=74 Identities=26% Similarity=0.384 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhh----hhhhh-------------------------h--chh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSAT----LASKW-------------------------R--GES 315 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~----l~~~~-------------------------~--g~~ 315 (522)
+..-++|.|++|||||+++..++... |..++.++... +.... . ...
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34579999999999999976554433 45555555321 11000 0 001
Q ss_pred HHHHHHHHHHHHhhCCcEEEEechhhhh
Q 009911 316 ERMVRCLFDLARAYAPSTIFIDEIDSLC 343 (522)
Q Consensus 316 e~~l~~~f~~a~~~~p~VL~IDEiD~l~ 343 (522)
+..+..+........|.+++|||+-.+.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3334445555555678999999998765
No 304
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.44 E-value=0.00011 Score=68.32 Aligned_cols=23 Identities=48% Similarity=0.777 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
+++|+|+||+|||||++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 305
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.42 E-value=0.0024 Score=65.64 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=44.1
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
+.+-+...+.|..++.. .-...+..|+|+|-.|||||.+++.+-+.++.+.+.+++-+.
T Consensus 8 v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred ccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 55666777777665521 111234567999999999999999999999999998887543
No 306
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.42 E-value=0.0014 Score=67.26 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=48.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh-h---------------hhchhHHHHHHHHHHHHhhCC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS-K---------------WRGESERMVRCLFDLARAYAP 331 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~-~---------------~~g~~e~~l~~~f~~a~~~~p 331 (522)
.+-++++||||||||+||-.+|... |..++.++...... . .....+..+..+....+...+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 3468899999999999999887544 66677666532111 0 011123333334344455678
Q ss_pred cEEEEechhhhhhc
Q 009911 332 STIFIDEIDSLCNA 345 (522)
Q Consensus 332 ~VL~IDEiD~l~~~ 345 (522)
.+|+||-+-.+.+.
T Consensus 135 ~lIVIDSvaal~~~ 148 (325)
T cd00983 135 DLIVVDSVAALVPK 148 (325)
T ss_pred CEEEEcchHhhccc
Confidence 99999999988753
No 307
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.40 E-value=0.0003 Score=66.93 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=57.1
Q ss_pred EEEEcCCCCcHHHHHHHH-HHHh---CCcEEEeehhhhhh-hhhc---hh-H------------HHHHHHHHHHHhhCCc
Q 009911 274 VLMFGPPGTGKTLLAKAV-ATEC---GTTFFNVSSATLAS-KWRG---ES-E------------RMVRCLFDLARAYAPS 332 (522)
Q Consensus 274 vLL~GppGtGKT~LArai-A~~l---g~~~i~v~~~~l~~-~~~g---~~-e------------~~l~~~f~~a~~~~p~ 332 (522)
.|++|.||+|||+.|-.. .... |.+++. +...|.- .... .. . ............-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999977554 3332 555544 3221110 0000 00 0 0001122222111468
Q ss_pred EEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCC
Q 009911 333 TIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 333 VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~ 411 (522)
+|+|||++.+++.+..... .. ...+..+...... .+-|+.+|..+..++..+++..+..+++..
T Consensus 82 liviDEa~~~~~~r~~~~~-----~~-~~~~~~l~~hRh~---------g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK-----KV-PEIIEFLAQHRHY---------GWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T----------HHHHGGGGCCCT---------T-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred EEEEECChhhcCCCccccc-----cc-hHHHHHHHHhCcC---------CcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 9999999999877643110 01 2222334333322 267888999999999999987776666543
No 308
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.39 E-value=0.00091 Score=64.01 Aligned_cols=67 Identities=22% Similarity=0.429 Sum_probs=40.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcE-------------EEeehh-hhh---hhhhchhHHHHHHHHHHHHhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-----GTTF-------------FNVSSA-TLA---SKWRGESERMVRCLFDLARAY 329 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-----g~~~-------------i~v~~~-~l~---~~~~g~~e~~l~~~f~~a~~~ 329 (522)
+-++|+||+|+|||||++.|+... |.++ ..+... ++. +.+..+. ..+..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~-~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAEL-RRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHH-HHHHHHHHhccCC
Confidence 478999999999999999998533 4432 111111 110 0111111 2345555555444
Q ss_pred CCcEEEEech
Q 009911 330 APSTIFIDEI 339 (522)
Q Consensus 330 ~p~VL~IDEi 339 (522)
.|.+|++||.
T Consensus 105 ~p~llllDEp 114 (199)
T cd03283 105 EPVLFLLDEI 114 (199)
T ss_pred CCeEEEEecc
Confidence 7899999997
No 309
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00015 Score=64.99 Aligned_cols=33 Identities=36% Similarity=0.702 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
.++|++|-|||||||++..||..++..+++++-
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 399999999999999999999999999988763
No 310
>PRK13947 shikimate kinase; Provisional
Probab=97.38 E-value=0.00018 Score=66.69 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
+|+|.|+||||||++++.+|+.+|.+|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 79999999999999999999999999987664
No 311
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.38 E-value=0.0019 Score=60.19 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.+|+.|+||+|||++|..++..++.+++.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777766543
No 312
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.37 E-value=0.0011 Score=78.06 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=89.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh--hhhhchh----HH---HHHHHHHHHHhhCCcEEEEechhhhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA--SKWRGES----ER---MVRCLFDLARAYAPSTIFIDEIDSLC 343 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~--~~~~g~~----e~---~l~~~f~~a~~~~p~VL~IDEiD~l~ 343 (522)
.+||-||..+|||+++..+|.++|-.|+.++-.... ..|.|.- .. .-..++-.|.... --|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 699999999999999999999999999999865432 2344331 11 0112222332222 46889999543
Q ss_pred hccCCCCchhhHHHHHHHHHHHhhh---cCCCC-CCCCCCcceEEEEeecCCCC------CccHHHHhhcccccccCCCC
Q 009911 344 NARGASGEHESSRRVKSELLVQVDG---VNNTG-TNEDGSRKIVMVLAATNFPW------DIDEALRRRLEKRIYIPLPN 413 (522)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~Ll~~ld~---~~~~~-~~~~~~~~~VivIattn~p~------~ld~aL~rRf~~~i~i~~Pd 413 (522)
...++..|-..+|. +.... .-.....+.++++||-|.|. .|..|+|.|| ..++|..-.
T Consensus 968 -----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddip 1035 (4600)
T COG5271 968 -----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIP 1035 (4600)
T ss_pred -----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCc
Confidence 23344444444442 22111 11222345578888888774 6779999999 578887777
Q ss_pred HHHHHHHHHHHH
Q 009911 414 FESRKELIKINL 425 (522)
Q Consensus 414 ~~~R~~Ilk~~l 425 (522)
.++...||+..+
T Consensus 1036 edEle~ILh~rc 1047 (4600)
T COG5271 1036 EDELEEILHGRC 1047 (4600)
T ss_pred HHHHHHHHhccC
Confidence 788888887554
No 313
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.36 E-value=0.0019 Score=62.39 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
....-++|+|+||+|||+++..+|..+ |..++.++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 344568899999999999999998776 456666654
No 314
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.36 E-value=0.00061 Score=65.05 Aligned_cols=35 Identities=34% Similarity=0.557 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSAT 306 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~ 306 (522)
+.++|.|+||||||++++.+...+ |..++.+.++.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 368889999999999999987665 66777776554
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.34 E-value=0.003 Score=62.12 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=27.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 267 IRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 267 ~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
+-.+...+|++||||+|||+++..++.+. |.+.+.++
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 33455689999999999999998765542 55555554
No 316
>PRK04296 thymidine kinase; Provisional
Probab=97.33 E-value=0.0018 Score=61.55 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
-+|++||+|+|||+++..++..+ +..++.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47899999999999998888776 55555553
No 317
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0067 Score=63.51 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 243 LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 243 ~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
..++++.+.+.+...+..+..+ ...++.++|.||+|+||||++..||..+ |..+..+++
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3456666666554333222111 1223679999999999999999999877 334444443
No 318
>PRK00625 shikimate kinase; Provisional
Probab=97.32 E-value=0.00022 Score=66.69 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
+|+|+|.||+|||++++.+|+.++.+|+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 68999999999999999999999999988764
No 319
>PRK03839 putative kinase; Provisional
Probab=97.32 E-value=0.00021 Score=67.03 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999998765
No 320
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.31 E-value=0.0039 Score=60.59 Aligned_cols=96 Identities=24% Similarity=0.340 Sum_probs=59.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeehhhhhh----h----------------------h-------
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSSATLAS----K----------------------W------- 311 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~~~l~~----~----------------------~------- 311 (522)
.....+|+.|+||+|||+|+..++... |-.++.++...-.. . +
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 344679999999999999999876433 66666665322110 0 0
Q ss_pred hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
....+..+..+........+.+|+||-+..+. . ..+....+..+..|...+..
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~---~~~~~~~r~~l~~l~~~l~~ 149 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSALL-L---YDDPEELRRFLRALIKFLKS 149 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-T---SSSGGGHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-h---cCCHHHHHHHHHHHHHHHHH
Confidence 01234445556666667788999999999983 2 12234455666666666643
No 321
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0002 Score=66.28 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
.+++|+|++|+||||+.+++|+.++.+|+..+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 479999999999999999999999999988764
No 322
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0016 Score=61.55 Aligned_cols=24 Identities=42% Similarity=0.629 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg 296 (522)
=++|+|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999999994
No 323
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.0026 Score=61.58 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~ 293 (522)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999983
No 324
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.28 E-value=0.00026 Score=64.14 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
+|+|+|+||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988665
No 325
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.27 E-value=0.0013 Score=60.50 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
++.-.++|+||+||||++|.+++|...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 344579999999999999999999876
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.27 E-value=0.0015 Score=57.45 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=38.3
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCce--EEEEcCCCCcHHHHHHHHHHHh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKG--VLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~--vLL~GppGtGKT~LAraiA~~l 295 (522)
|.|+.-+.+.+..++...+..+ .|.+. +-|+|++|||||++++.||+.+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 8899999998888886543221 33333 5589999999999999999986
No 327
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.26 E-value=0.0032 Score=67.89 Aligned_cols=76 Identities=26% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhh------ch--------hHHHHHHHHHHHHhhCC
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWR------GE--------SERMVRCLFDLARAYAP 331 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~------g~--------~e~~l~~~f~~a~~~~p 331 (522)
.+..-+||.|+||+|||+|+..+|..+ +.++++++..+...... |- .+..+..+...+....|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 344568999999999999999997765 34666666533221110 00 01123455556666789
Q ss_pred cEEEEechhhhhh
Q 009911 332 STIFIDEIDSLCN 344 (522)
Q Consensus 332 ~VL~IDEiD~l~~ 344 (522)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998764
No 328
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0054 Score=64.57 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..++|+||+|+||||.+..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998765
No 329
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.23 E-value=0.0037 Score=63.86 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHH
Q 009911 243 LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCL 322 (522)
Q Consensus 243 ~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~ 322 (522)
..+++..|.+++...|... ....+-++|+|+.|+|||++++.|...+|.....+..+.......+ .-
T Consensus 54 d~~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~-------~~ 120 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE-------HR 120 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC-------CC
Confidence 4567777777765544221 2233579999999999999999999999876544333332222111 02
Q ss_pred HHHHHhhCCcEEEEechh
Q 009911 323 FDLARAYAPSTIFIDEID 340 (522)
Q Consensus 323 f~~a~~~~p~VL~IDEiD 340 (522)
|..+......++++||++
T Consensus 121 f~~a~l~gk~l~~~~E~~ 138 (304)
T TIGR01613 121 FGLARLEGKRAVIGDEVQ 138 (304)
T ss_pred chhhhhcCCEEEEecCCC
Confidence 455555666799999995
No 330
>PRK10867 signal recognition particle protein; Provisional
Probab=97.23 E-value=0.03 Score=59.88 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=44.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeehhhhhhh----------------h----hchhHHHHHHHHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSSATLASK----------------W----RGESERMVRCLFD 324 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~~~l~~~----------------~----~g~~e~~l~~~f~ 324 (522)
.++.-++|+|++|+||||++-.+|..+ |..+..+++...... + ..........++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 345679999999999999777777654 555666655422110 0 0112333445555
Q ss_pred HHHhhCCcEEEEechh
Q 009911 325 LARAYAPSTIFIDEID 340 (522)
Q Consensus 325 ~a~~~~p~VL~IDEiD 340 (522)
.++.....+|+||=.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 5665566789988774
No 331
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.21 E-value=0.00052 Score=65.59 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=41.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC----cEEEee-hhhhhhh---------hhchhHHHHHHHHHHHHhhCCcEEEEec
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT----TFFNVS-SATLASK---------WRGESERMVRCLFDLARAYAPSTIFIDE 338 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~----~~i~v~-~~~l~~~---------~~g~~e~~l~~~f~~a~~~~p~VL~IDE 338 (522)
-+++.||+|+||||++++++..+.. .++.+. ..++... ..+.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999888742 222221 1111100 0111112244455566667899999999
Q ss_pred h
Q 009911 339 I 339 (522)
Q Consensus 339 i 339 (522)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 332
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.21 E-value=0.0025 Score=62.23 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeehh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSSA 305 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~~ 305 (522)
....-+.|+||||||||+++..+|... +..++.++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 444568999999999999999998553 2466666643
No 333
>PRK14532 adenylate kinase; Provisional
Probab=97.19 E-value=0.00036 Score=65.83 Aligned_cols=30 Identities=33% Similarity=0.645 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
+|+|.||||+||||+|+.+|+.+|..++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999777654
No 334
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.17 E-value=0.002 Score=61.49 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+-++|+||+|+||||.+--+|..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 578999999999999888887766
No 335
>PRK06762 hypothetical protein; Provisional
Probab=97.17 E-value=0.0016 Score=60.01 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
.-++|+|+||+||||+|+.++..++..++.++...+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 46889999999999999999999976666666655543
No 336
>PRK10536 hypothetical protein; Provisional
Probab=97.16 E-value=0.0068 Score=59.95 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
-++++||+|||||+||.+++-+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999884
No 337
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.16 E-value=0.00039 Score=65.12 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
|+|+|+||+||||+|+.+|..+|..++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998655543
No 338
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.15 E-value=0.0031 Score=61.14 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---C------CcEEEeehh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---G------TTFFNVSSA 305 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g------~~~i~v~~~ 305 (522)
....-+.|+||||+|||+|+..+|... + ..++.++..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 344568899999999999999998664 2 455666543
No 339
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.15 E-value=0.0017 Score=60.00 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=42.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehhhhh--------hhhhc----hh-HHHHHHHHHHHHhhCCcEE
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSATLA--------SKWRG----ES-ERMVRCLFDLARAYAPSTI 334 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~~l~--------~~~~g----~~-e~~l~~~f~~a~~~~p~VL 334 (522)
+...+.|.||.|+|||||.+.|+..... --+.++...+. ....+ -+ ...-+-.+..+-...|.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4457899999999999999999977521 11222211110 00010 01 1223334556667789999
Q ss_pred EEechh
Q 009911 335 FIDEID 340 (522)
Q Consensus 335 ~IDEiD 340 (522)
++||--
T Consensus 105 llDEP~ 110 (163)
T cd03216 105 ILDEPT 110 (163)
T ss_pred EEECCC
Confidence 999984
No 340
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0027 Score=66.30 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..++|+||+|+||||++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999764
No 341
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.15 E-value=0.036 Score=55.51 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=57.4
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHH
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERM 318 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~ 318 (522)
+++-.+++.+.+...... +..|..++||.|..|+||+++++..|..++..++.+..+.-.+ ..+....
T Consensus 9 ~lVlf~~ai~hi~ri~Rv----------L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV----------LSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHH----------HCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH----------HcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 466677777777666543 2345568999999999999999999999999999887543211 2233445
Q ss_pred HHHHHHHHH-hhCCcEEEEech
Q 009911 319 VRCLFDLAR-AYAPSTIFIDEI 339 (522)
Q Consensus 319 l~~~f~~a~-~~~p~VL~IDEi 339 (522)
++.++..|- ...|.+++|+|-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHHhccCCCeEEEecCc
Confidence 666666554 345778887764
No 342
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.15 E-value=0.0017 Score=56.45 Aligned_cols=25 Identities=40% Similarity=0.468 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
++++++||+|+|||+++-.++..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3789999999999998888877763
No 343
>PRK13695 putative NTPase; Provisional
Probab=97.13 E-value=0.0048 Score=57.50 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.++|+|++|+|||||++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988776
No 344
>PRK06217 hypothetical protein; Validated
Probab=97.13 E-value=0.00044 Score=65.11 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
.|+|.|++|+||||++++|+..++.+++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 59999999999999999999999999887663
No 345
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.12 E-value=0.00066 Score=67.94 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeeh-hhhhh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---TFFNVSS-ATLAS 309 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~-~~l~~ 309 (522)
..++++++-.....+.+.+++.... +...++|+.|++|+||||+++++...+.. .++.+.. .++.-
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred cccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 3456666655544455555443321 12258999999999999999999998843 3333321 11110
Q ss_pred h------h-hchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 310 K------W-RGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 310 ~------~-~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
. + .......+..++..+....|.+|+|.||-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 0 0 01112235666777777889999999994
No 346
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.11 E-value=0.0017 Score=64.28 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
..++|+||+|+|||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 47999999999999999999998854
No 347
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.09 E-value=0.0013 Score=65.69 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEee-hhhhhh-
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG---TTFFNVS-SATLAS- 309 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~-~~~l~~- 309 (522)
.+++++.-..+..+.|.+++..+ ...+++.||+|+||||+++++...+. ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~-------------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKP-------------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcC-------------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 34556665666666676665432 23589999999999999999987774 2344432 111110
Q ss_pred -----hhhchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 310 -----KWRGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 310 -----~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
............++..+....|.+|+|+||.
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0011111234566666777889999999994
No 348
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.09 E-value=0.0052 Score=57.23 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=45.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh-hh----------------chhHHHHHHHHHHHHhhCCcEEEE
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK-WR----------------GESERMVRCLFDLARAYAPSTIFI 336 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~-~~----------------g~~e~~l~~~f~~a~~~~p~VL~I 336 (522)
+|++|++|+|||++|..++...+.+++++....-.+. +. .+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999888777777754432110 00 01111222322211 14679999
Q ss_pred echhhhhhcc
Q 009911 337 DEIDSLCNAR 346 (522)
Q Consensus 337 DEiD~l~~~~ 346 (522)
|-+..+..+.
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998887654
No 349
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.08 E-value=0.012 Score=68.80 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=79.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh--h-----h----hhhh----hch---------------hHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA--T-----L----ASKW----RGE---------------SERMVRC 321 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~--~-----l----~~~~----~g~---------------~e~~l~~ 321 (522)
+-++++||+|.|||+++..++...+ ++..++.. + + .... .+. ....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3699999999999999999988776 55555432 1 1 0000 000 0112222
Q ss_pred HHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc-HHH
Q 009911 322 LFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID-EAL 399 (522)
Q Consensus 322 ~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld-~aL 399 (522)
++..... ..|.+|+|||++.+.. ......+..|+.. ... ..++|| ++.....+. ..+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~--------~~~~~~l~~l~~~---~~~---------~~~lv~-~sR~~~~~~~~~l 170 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN--------PEIHEAMRFFLRH---QPE---------NLTLVV-LSRNLPPLGIANL 170 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC--------hHHHHHHHHHHHh---CCC---------CeEEEE-EeCCCCCCchHhH
Confidence 3332222 4688999999987631 1122233333322 221 124445 444321222 122
Q ss_pred Hh--hcccccccC--CCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHH
Q 009911 400 RR--RLEKRIYIP--LPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGD 449 (522)
Q Consensus 400 ~r--Rf~~~i~i~--~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~ 449 (522)
+- .+ ..+... ..+.++-.+++...+.. .+ +..++..|.+.|+|...+
T Consensus 171 ~~~~~~-~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 171 RVRDQL-LEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWATA 221 (903)
T ss_pred HhcCcc-eecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChHHH
Confidence 21 11 123333 66888888888755432 12 334567888888886543
No 350
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.08 E-value=0.00051 Score=62.19 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
++|+|+||+||||+|+.++..++..++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D 31 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD 31 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCc
Confidence 689999999999999999999988776543
No 351
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.07 E-value=0.00055 Score=61.37 Aligned_cols=30 Identities=30% Similarity=0.643 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
++|.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998876
No 352
>PRK13808 adenylate kinase; Provisional
Probab=97.06 E-value=0.0022 Score=65.89 Aligned_cols=30 Identities=27% Similarity=0.622 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.|||+||||+|||++++.||..+|..++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 589999999999999999999999766554
No 353
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.06 E-value=0.00062 Score=63.39 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=37.1
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEeehhhh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT---FFNVSSATL 307 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~---~i~v~~~~l 307 (522)
++|-++..+.|..++.. .....++.++|+|++|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~---------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA---------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG---------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH---------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 67888888888887631 112233689999999999999999988777443 666665544
No 354
>PRK14531 adenylate kinase; Provisional
Probab=97.06 E-value=0.00064 Score=64.03 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
..|+|+||||+||||+++.+|..+|.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999877654
No 355
>PRK13948 shikimate kinase; Provisional
Probab=97.05 E-value=0.00072 Score=63.76 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=31.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.++..|+|.|.+|+|||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34578999999999999999999999999999777
No 356
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.04 E-value=0.00058 Score=64.42 Aligned_cols=30 Identities=33% Similarity=0.702 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
|+|+|+||+||||+|+.||..+|..++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 799999999999999999999998776653
No 357
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.04 E-value=0.0069 Score=59.34 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~ 303 (522)
.+..-++|.|+||+|||+++..++... +.+++.++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 344578999999999999988876554 66776666
No 358
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.04 E-value=0.0015 Score=67.54 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=46.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEee-hhhhhh------------h-hhchhHHHHHHHHHHHHhhCCcEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT--TFFNVS-SATLAS------------K-WRGESERMVRCLFDLARAYAPSTIF 335 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~-~~~l~~------------~-~~g~~e~~l~~~f~~a~~~~p~VL~ 335 (522)
.++|++|++|+||||++++++..+.. .++.+. ..++.- . -.+.....+..++..+....|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 58999999999999999999988853 333221 111110 0 0111223356778888889999999
Q ss_pred Eechh
Q 009911 336 IDEID 340 (522)
Q Consensus 336 IDEiD 340 (522)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99993
No 359
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.03 E-value=0.016 Score=58.25 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
.+++-++|+||+|+||||++..+|..+ |..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 344678899999999999999998777 5555545443
No 360
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.03 E-value=0.00055 Score=62.95 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
++|.||+|+||||+++.+++.++..++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D 30 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGD 30 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCc
Confidence 578999999999999999999997776543
No 361
>PRK14530 adenylate kinase; Provisional
Probab=97.02 E-value=0.00068 Score=65.55 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.|+|.||||+||||+++.||..++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 799999999999999999999999877754
No 362
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.02 E-value=0.00066 Score=63.39 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
+-++|.|+||+||||+|+.++..++..++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 46899999999999999999999988777665443
No 363
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.01 E-value=0.0032 Score=57.32 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL 307 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l 307 (522)
++|+|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 666666665444
No 364
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.01 E-value=0.025 Score=58.07 Aligned_cols=62 Identities=23% Similarity=0.179 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHhccCcC-hhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 243 LTEAKRLLEEAVVLPLWM-PEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 243 ~~~vk~~L~e~v~~pl~~-~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
.+.+++.|.+.+...+.. ...+......+.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 85 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 85 PEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred HHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 344555555555443321 11111112344678899999999999999999887 444544443
No 365
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.01 E-value=0.0091 Score=59.65 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeeh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSS 304 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~ 304 (522)
.+..-++|.|+||+|||+++..+|..+ |..++.++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 444578999999999999999887654 656666554
No 366
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.01 E-value=0.022 Score=58.27 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.+..|.|+|+=|+|||++.+.+-..+...
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 44589999999999999999998887443
No 367
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.99 E-value=0.0033 Score=65.90 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeehhhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGT---TFFNVSSATLA 308 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~~~l~ 308 (522)
+..++|.|+.|||||++.++|...+.. .++.+..+.+.
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIA 62 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHH
Confidence 358999999999999999999888843 45555444443
No 368
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.99 E-value=0.0071 Score=57.83 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA 292 (522)
.-++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 469999999999999999998
No 369
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.98 E-value=0.00082 Score=62.31 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
..++|+|++|+|||++++.+|..+|.+|+..+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 368999999999999999999999999987653
No 370
>PRK09354 recA recombinase A; Provisional
Probab=96.98 E-value=0.0061 Score=63.06 Aligned_cols=74 Identities=24% Similarity=0.298 Sum_probs=47.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh-hh---------------hchhHHHHHHHHHHHHhhCC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS-KW---------------RGESERMVRCLFDLARAYAP 331 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~-~~---------------~g~~e~~l~~~f~~a~~~~p 331 (522)
.+-++|+||+|||||+||-.++... |..++.++...-.. .+ ....+..+..+-...+...+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 3467899999999999999876544 66666666433111 00 11123333333334455678
Q ss_pred cEEEEechhhhhh
Q 009911 332 STIFIDEIDSLCN 344 (522)
Q Consensus 332 ~VL~IDEiD~l~~ 344 (522)
.+|+||-+-.+.+
T Consensus 140 ~lIVIDSvaaL~~ 152 (349)
T PRK09354 140 DLIVVDSVAALVP 152 (349)
T ss_pred CEEEEeChhhhcc
Confidence 9999999998875
No 371
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.97 E-value=0.0054 Score=60.69 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL 307 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l 307 (522)
|+|+|+||+||||+|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999988 456666665444
No 372
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.97 E-value=0.0022 Score=68.84 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=86.8
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccC--CCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------EEeehhhhh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIR--RPWKGVLMFGPPGTGKTLLAKAVATECGTTF---------FNVSSATLA 308 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~--~~~~~vLL~GppGtGKT~LAraiA~~lg~~~---------i~v~~~~l~ 308 (522)
|.|++.+|+.|..++.-- ......++. +-.-+|||+|.|-+.|+-|.|++.+.....+ +-+.+.-..
T Consensus 303 I~GH~~vKkAillLLlGG--vEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTt 380 (818)
T KOG0479|consen 303 IYGHDYVKKAILLLLLGG--VEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTT 380 (818)
T ss_pred cccHHHHHHHHHHHHhcc--ceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEee
Confidence 889999999998766321 222222221 2224899999999999999999976653211 111111111
Q ss_pred hhhhchhHHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhh--hcCCCCCCCCCCcceEEE
Q 009911 309 SKWRGESERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVD--GVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 309 ~~~~g~~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld--~~~~~~~~~~~~~~~Viv 385 (522)
.+-.| |..+. .-|.- ...+|++|||+|++... +....-.++.+=...|. |+... -+...-|
T Consensus 381 D~eTG--ERRLE---AGAMVLADRGVVCIDEFDKMsDi-----DRvAIHEVMEQqtVTIaKAGIHas------LNARCSV 444 (818)
T KOG0479|consen 381 DQETG--ERRLE---AGAMVLADRGVVCIDEFDKMSDI-----DRVAIHEVMEQQTVTIAKAGIHAS------LNARCSV 444 (818)
T ss_pred ccccc--hhhhh---cCceEEccCceEEehhcccccch-----hHHHHHHHHhcceEEeEeccchhh------hccceee
Confidence 11112 22221 11111 12479999999998532 11111122111111111 22211 1123678
Q ss_pred EeecCCCC-------------CccHHHHhhccccccc-CCCCHHHHHHHHHHHH
Q 009911 386 LAATNFPW-------------DIDEALRRRLEKRIYI-PLPNFESRKELIKINL 425 (522)
Q Consensus 386 Iattn~p~-------------~ld~aL~rRf~~~i~i-~~Pd~~~R~~Ilk~~l 425 (522)
|+++|..+ .|+..|++||+..+-+ ..-|.+.-..|-.+.+
T Consensus 445 lAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 445 LAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred eeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 99998654 5678999999854433 3334333333333333
No 373
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.96 E-value=0.0046 Score=55.86 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=40.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehhh---hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSAT---LASKWRGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~~---l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
+...+.|.||+|+|||||+++++..+.. --+.++... +...+.+.. .-+-.+..+-...|.++++||-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~--~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGE--KMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHH--HHHHHHHHHHhcCCCEEEEeCCc
Confidence 4457889999999999999999987631 001111100 000011111 12223455556789999999984
No 374
>PRK13946 shikimate kinase; Provisional
Probab=96.96 E-value=0.00073 Score=63.72 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
+.|+|+|.+|||||++++.+|..+|.+|+..+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 589999999999999999999999999988774
No 375
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.95 E-value=0.00082 Score=68.45 Aligned_cols=68 Identities=24% Similarity=0.377 Sum_probs=45.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeeh-hhhhhh-------hhchhHHHHHHHHHHHHhhCCcEEEEec
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG-----TTFFNVSS-ATLASK-------WRGESERMVRCLFDLARAYAPSTIFIDE 338 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg-----~~~i~v~~-~~l~~~-------~~g~~e~~l~~~f~~a~~~~p~VL~IDE 338 (522)
.++|++|++|+||||++++++..+. ..++.+.- .++.-. ........+..++..+..+.|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4899999999999999999998872 33433321 111100 0011111466777788888999999999
Q ss_pred h
Q 009911 339 I 339 (522)
Q Consensus 339 i 339 (522)
+
T Consensus 213 i 213 (299)
T TIGR02782 213 V 213 (299)
T ss_pred c
Confidence 9
No 376
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.94 E-value=0.011 Score=56.54 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA 292 (522)
+.++|+||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 369999999999999999998
No 377
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.94 E-value=0.0078 Score=60.37 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=38.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh---hh-hchhHHHHHHHHHHHH---hhCCcEEEEechhhhh
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS---KW-RGESERMVRCLFDLAR---AYAPSTIFIDEIDSLC 343 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~---~~-~g~~e~~l~~~f~~a~---~~~p~VL~IDEiD~l~ 343 (522)
|+|+|-||+|||++|+.|+..+ +..++.++...+.- .| ....++.++..+..+- .....||+||+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 7899999999999999999875 56677777554431 12 1223555554432221 1234799999997664
Q ss_pred h
Q 009911 344 N 344 (522)
Q Consensus 344 ~ 344 (522)
+
T Consensus 84 g 84 (270)
T PF08433_consen 84 G 84 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 378
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.93 E-value=0.0013 Score=62.19 Aligned_cols=69 Identities=26% Similarity=0.429 Sum_probs=44.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehh-hhhh---hh----------hchhHHHHHHHHHHHHhhCCcEE
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSA-TLAS---KW----------RGESERMVRCLFDLARAYAPSTI 334 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~-~l~~---~~----------~g~~e~~l~~~f~~a~~~~p~VL 334 (522)
...++|.||+|+||||++++++..+.. ..+.+... .+.. .+ .+.....+..++..+....|.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 358999999999999999999988732 22222111 1100 00 01112235566666777789999
Q ss_pred EEech
Q 009911 335 FIDEI 339 (522)
Q Consensus 335 ~IDEi 339 (522)
+++|+
T Consensus 105 ~igEi 109 (186)
T cd01130 105 IVGEV 109 (186)
T ss_pred EEEcc
Confidence 99999
No 379
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.93 E-value=0.00097 Score=62.26 Aligned_cols=33 Identities=21% Similarity=0.647 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 479999999999999999999999999988764
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.034 Score=58.85 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-++|.||+|+||||++..+|...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999754
No 381
>PRK04328 hypothetical protein; Provisional
Probab=96.93 E-value=0.013 Score=58.06 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.+...+|++|+||||||+|+..++... |-+.+.++
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345678999999999999998876442 44444444
No 382
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.92 E-value=0.014 Score=56.60 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
+...++|.|+||+|||+++..+|... |.+++.++.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 44678999999999999999887543 556655554
No 383
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.92 E-value=0.0016 Score=62.26 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=61.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~ 351 (522)
..++|.|+.|+|||++++.|+.+ ++.-+.... .. ...+..+ . ..-||.|||++.+..
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~-----~~-kd~~~~l---~---~~~iveldEl~~~~k------- 109 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF-----DD-KDFLEQL---Q---GKWIVELDELDGLSK------- 109 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHH----hccCccccC-----CC-cHHHHHH---H---HhHheeHHHHhhcch-------
Confidence 46889999999999999999766 221111111 00 1111111 1 114889999987651
Q ss_pred hhhHHHHHHHHHHHhhhcCCC-CCCCCCCcceEEEEeecCCCCCc-cHHHHhhcccccccC
Q 009911 352 HESSRRVKSELLVQVDGVNNT-GTNEDGSRKIVMVLAATNFPWDI-DEALRRRLEKRIYIP 410 (522)
Q Consensus 352 ~~~~~~~~~~Ll~~ld~~~~~-~~~~~~~~~~VivIattn~p~~l-d~aL~rRf~~~i~i~ 410 (522)
.....+++-+-...+.+... ...........++|+|||..+-| |+.=-||| ..|.+.
T Consensus 110 -~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~ 168 (198)
T PF05272_consen 110 -KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVS 168 (198)
T ss_pred -hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEc
Confidence 12234444443333333221 12222234457889999987644 34445677 344443
No 384
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.92 E-value=0.01 Score=59.14 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.+..-++++|+||||||++|-.+|... |-+++.++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344578999999999999999886643 44555554
No 385
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.91 E-value=0.0015 Score=67.97 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=43.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEee-hhhhh---------hhhhchhHHHHHHHHHHHHhhCCcEEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT----TFFNVS-SATLA---------SKWRGESERMVRCLFDLARAYAPSTIFID 337 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~----~~i~v~-~~~l~---------~~~~g~~e~~l~~~f~~a~~~~p~VL~ID 337 (522)
..+|++||+|+||||+++++...+.. .++.+. ..++. ..-.|.....+...+..+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 47899999999999999999987742 333332 11111 00012111224555666667889999999
Q ss_pred ch
Q 009911 338 EI 339 (522)
Q Consensus 338 Ei 339 (522)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 99
No 386
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.91 E-value=0.0097 Score=58.42 Aligned_cols=129 Identities=12% Similarity=0.216 Sum_probs=69.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeehhhhhhhh---h-----------chhHHHHHH----HHHHHH---
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT---TFFNVSSATLASKW---R-----------GESERMVRC----LFDLAR--- 327 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~~~l~~~~---~-----------g~~e~~l~~----~f~~a~--- 327 (522)
-.+++.|++|||||+++..+...+.- +++.+.. .....+ . .+.+..+.. +-+...
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 37999999999999999998877643 2232222 111111 0 011111111 111111
Q ss_pred h---hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcc
Q 009911 328 A---YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLE 404 (522)
Q Consensus 328 ~---~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~ 404 (522)
. ..+.+|+||++-. ...-...+..++. .+ +--.+.+|..+.....+++.+|.-.+
T Consensus 93 ~~k~~~~~LiIlDD~~~----------~~~k~~~l~~~~~--~g----------RH~~is~i~l~Q~~~~lp~~iR~n~~ 150 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGD----------KKLKSKILRQFFN--NG----------RHYNISIIFLSQSYFHLPPNIRSNID 150 (241)
T ss_pred ccCCCCCeEEEEeCCCC----------chhhhHHHHHHHh--cc----------cccceEEEEEeeecccCCHHHhhcce
Confidence 1 1256899999831 0111122333332 11 12337788888888899999988777
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 009911 405 KRIYIPLPNFESRKELIKIN 424 (522)
Q Consensus 405 ~~i~i~~Pd~~~R~~Ilk~~ 424 (522)
..+.+. -+..+...|++.+
T Consensus 151 y~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 151 YFIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEEec-CcHHHHHHHHHhc
Confidence 666665 4555655555543
No 387
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0013 Score=61.74 Aligned_cols=28 Identities=43% Similarity=0.834 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
.|+|.||||+||||+|+.||+.++.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999665443
No 388
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.89 E-value=0.0077 Score=60.85 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEeehh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC----G-TTFFNVSSA 305 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l----g-~~~i~v~~~ 305 (522)
+..++|+||+|+||||++..+|..+ | ..+..++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4578999999999999999998766 3 455555543
No 389
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.009 Score=62.18 Aligned_cols=98 Identities=26% Similarity=0.321 Sum_probs=67.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEeehhhhhhhhh------c--------hhHHHHHHHHHHHHhhCCc
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECG--TTFFNVSSATLASKWR------G--------ESERMVRCLFDLARAYAPS 332 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg--~~~i~v~~~~l~~~~~------g--------~~e~~l~~~f~~a~~~~p~ 332 (522)
-+..-+||-|.||.|||||.-.+|..+. .++++++..+-..... + -.+..+..++.......|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 4445688889999999999998888773 2688888654332211 1 1245577888888889999
Q ss_pred EEEEechhhhhhccC--CCCchhhHHHHHHHHHHHh
Q 009911 333 TIFIDEIDSLCNARG--ASGEHESSRRVKSELLVQV 366 (522)
Q Consensus 333 VL~IDEiD~l~~~~~--~~~~~~~~~~~~~~Ll~~l 366 (522)
+++||-|..++...- .++.-...+..-.+|...-
T Consensus 171 lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 171 LVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred EEEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 999999999886542 2233334555555555443
No 390
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0052 Score=60.05 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
--|-|.||+|||||||.+.||...
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999765
No 391
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.88 E-value=0.0032 Score=57.67 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=44.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhch-------hHHHHHHHHHHHHhh--CCcEEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGE-------SERMVRCLFDLARAY--APSTIFID 337 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~-------~e~~l~~~f~~a~~~--~p~VL~ID 337 (522)
-|+|+|.+|+||||||+++.+.+ |.+++.++...+...+... -...++.+...|+.. +-.++++.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 58899999999999999999888 7889999988776543221 134455555555532 23455555
No 392
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.88 E-value=0.001 Score=65.16 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|+|.||||+||||+|+.+|+.+|.+++.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 5999999999999999999999998877655
No 393
>PRK14528 adenylate kinase; Provisional
Probab=96.87 E-value=0.0011 Score=62.69 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
+.+++.||||+||||+++.+|..+|.+++.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~ 33 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTG 33 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCC
Confidence 36899999999999999999999998876653
No 394
>PRK06547 hypothetical protein; Provisional
Probab=96.87 E-value=0.0012 Score=61.68 Aligned_cols=34 Identities=35% Similarity=0.464 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.+.-|++.|++|+|||++++.++..++..++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3457889999999999999999999998877654
No 395
>PRK05973 replicative DNA helicase; Provisional
Probab=96.86 E-value=0.016 Score=56.91 Aligned_cols=35 Identities=40% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.+..-+||.|+||+|||+++-.++... |.+++.++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 455678999999999999998876654 65665555
No 396
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.86 E-value=0.0019 Score=67.65 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=44.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEeehh-hhh-----------hhhhchhHHHHHHHHHHHHhhCCcEEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECG-----TTFFNVSSA-TLA-----------SKWRGESERMVRCLFDLARAYAPSTIF 335 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg-----~~~i~v~~~-~l~-----------~~~~g~~e~~l~~~f~~a~~~~p~VL~ 335 (522)
.+|++||+|+||||+++++...+. ..++.+.-. ++. ....|.....+...+..+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 689999999999999999988773 344444311 111 000111112344556666677999999
Q ss_pred Eechh
Q 009911 336 IDEID 340 (522)
Q Consensus 336 IDEiD 340 (522)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99993
No 397
>PTZ00202 tuzin; Provisional
Probab=96.85 E-value=0.083 Score=56.10 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=45.5
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
..+++|-+.....|...+...- ...++-++|+|++|||||+|++.+...++...+.++..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 4578998888888887764211 11224678999999999999999999999777777654
No 398
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.018 Score=60.14 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=49.7
Q ss_pred CCChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 009911 215 GPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~ 294 (522)
+.++.+...+-..+....+... ..+.+++.+.+.+.+..-+.....+.. .+.+.++|+||+|+||||++..+|..
T Consensus 155 gV~~~~~~~l~~~~~~~~~~~~---~~~~~~v~~~~~~~L~~~l~~~~~~~~--~~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 155 GISDTYVADFMQAGRKQFKQVE---TAHLDDITDWFVPYLSGKLAVEDSFDL--SNHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCCHHHHHHHHHHHHHhccccc---cccHHHHHHHHHHHhcCcEeeCCCcee--cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444444433333322 233566777777766554433332221 33467899999999999999999876
Q ss_pred h---CCcEEEeeh
Q 009911 295 C---GTTFFNVSS 304 (522)
Q Consensus 295 l---g~~~i~v~~ 304 (522)
+ +..+..+++
T Consensus 230 l~~~g~~V~lIta 242 (407)
T PRK12726 230 LLKQNRTVGFITT 242 (407)
T ss_pred HHHcCCeEEEEeC
Confidence 6 444444444
No 399
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.82 E-value=0.0034 Score=68.86 Aligned_cols=27 Identities=41% Similarity=0.565 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.++..+|+.|++|||||+|.|+||..-
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 355689999999999999999999765
No 400
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.82 E-value=0.016 Score=54.72 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 009911 274 VLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA 292 (522)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 401
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.82 E-value=0.0031 Score=64.71 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=45.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEee-hhhhhhh------hhchhHHHHHHHHHHHHhhCCcEEEEech
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG-----TTFFNVS-SATLASK------WRGESERMVRCLFDLARAYAPSTIFIDEI 339 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg-----~~~i~v~-~~~l~~~------~~g~~e~~l~~~f~~a~~~~p~VL~IDEi 339 (522)
.++|++|++|+||||++++++..+. ..++.+. ..++.-. +.......+..++..+..+.|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 4899999999999999999998862 3333332 1121100 00111123566777777889999999999
No 402
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.82 E-value=0.0027 Score=58.43 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
|.|+|++|||||||+++++.. |.+++.-.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999999 8887754444443
No 403
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.82 E-value=0.0012 Score=61.84 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
-++|.|+||+||||+++.++..+|..++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 688999999999999999999998665443
No 404
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0011 Score=60.28 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
|-+.|||||||||+++.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6788999999999999999999999875
No 405
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.019 Score=61.39 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~~ 305 (522)
+.++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 578999999999999888887654 3345555543
No 406
>PRK02496 adk adenylate kinase; Provisional
Probab=96.80 E-value=0.0012 Score=62.08 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.++|.||||+||||+++.||..++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999999877654
No 407
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.79 E-value=0.0067 Score=69.14 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=57.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---C--CcEEEeehhhhh----hhhhchhHHHHHHHHHHHH----------hhCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---G--TTFFNVSSATLA----SKWRGESERMVRCLFDLAR----------AYAPS 332 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g--~~~i~v~~~~l~----~~~~g~~e~~l~~~f~~a~----------~~~p~ 332 (522)
+-++|.|+||||||++++++...+ + ..++-+.++.-. ....|.....++.++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 368999999999999999987655 4 444444433221 1112222233444443211 12357
Q ss_pred EEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc
Q 009911 333 TIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID 396 (522)
Q Consensus 333 VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld 396 (522)
+|+|||+..+ ...++..|+..+ .. ...+++++-.+....+.
T Consensus 419 llIvDEaSMv------------d~~~~~~Ll~~~---~~--------~~rlilvGD~~QLpsV~ 459 (720)
T TIGR01448 419 LLIVDESSMM------------DTWLALSLLAAL---PD--------HARLLLVGDTDQLPSVG 459 (720)
T ss_pred EEEEeccccC------------CHHHHHHHHHhC---CC--------CCEEEEECccccccCCC
Confidence 9999999544 233445555433 21 13377777766554443
No 408
>PRK13764 ATPase; Provisional
Probab=96.78 E-value=0.0022 Score=70.82 Aligned_cols=68 Identities=24% Similarity=0.364 Sum_probs=40.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEee-hhhh-----hhhhhchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT---TFFNVS-SATL-----ASKWRGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~-~~~l-----~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
.++|++||+|+||||++++++..+.. .+..+. ..++ ...|... ..........+....|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCC
Confidence 58999999999999999999988753 232221 1111 1111100 0011222233345679999999983
No 409
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.77 E-value=0.01 Score=55.64 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~ 294 (522)
+..-+.|.||.|+|||||.+++...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3346889999999999999999643
No 410
>PF13245 AAA_19: Part of AAA domain
Probab=96.77 E-value=0.0023 Score=51.34 Aligned_cols=33 Identities=36% Similarity=0.558 Sum_probs=24.0
Q ss_pred eEEEEcCCCCcHH-HHHHHHHHHh------CCcEEEeehh
Q 009911 273 GVLMFGPPGTGKT-LLAKAVATEC------GTTFFNVSSA 305 (522)
Q Consensus 273 ~vLL~GppGtGKT-~LAraiA~~l------g~~~i~v~~~ 305 (522)
-+++.|||||||| ++++.++..+ +..++.+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4556999999999 6777777666 5566666554
No 411
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.76 E-value=0.0013 Score=63.41 Aligned_cols=29 Identities=34% Similarity=0.717 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
|+|+||||+||||+|+.||..+|..++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999777654
No 412
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0073 Score=56.12 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+...+.|.||+|+|||||++.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44579999999999999999999876
No 413
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.74 E-value=0.014 Score=55.81 Aligned_cols=112 Identities=21% Similarity=0.365 Sum_probs=67.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh---------------------------------hhhchhHH
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS---------------------------------KWRGESER 317 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~---------------------------------~~~g~~e~ 317 (522)
+|+.|+.|||||.|...+|--+ |..+..++...... .-......
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~ 110 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARK 110 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHH
Confidence 6788999999999999987544 33333332211100 01123355
Q ss_pred HHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccH
Q 009911 318 MVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDE 397 (522)
Q Consensus 318 ~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~ 397 (522)
.+..+.+..+.....||+||-+..+.... .......|+..+..+...+. +||. |-+|..+++
T Consensus 111 ~L~~l~~~~k~~~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~gK---------vIil-Tvhp~~l~e 172 (235)
T COG2874 111 LLDLLLEFIKRWEKDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDLGK---------VIIL-TVHPSALDE 172 (235)
T ss_pred HHHHHHhhHHhhcCCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhCCC---------EEEE-EeChhhcCH
Confidence 66777777777778999999998876432 22333455556655554433 3333 445778887
Q ss_pred HHHhhc
Q 009911 398 ALRRRL 403 (522)
Q Consensus 398 aL~rRf 403 (522)
++.-|+
T Consensus 173 ~~~~ri 178 (235)
T COG2874 173 DVLTRI 178 (235)
T ss_pred HHHHHH
Confidence 776654
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.74 E-value=0.0092 Score=56.02 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=40.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehhhh---hhh--hhchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSATL---ASK--WRGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~~l---~~~--~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
+..-+.|.||.|+|||||++.++..+.. --+.++...+ ... +.+. ..-+-.+..+-...|.++++||--
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG--q~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG--ELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH--HHHHHHHHHHHhcCCCEEEEECCc
Confidence 3346889999999999999999987521 1111111100 000 1111 112333445556679999999984
No 415
>PLN02200 adenylate kinase family protein
Probab=96.74 E-value=0.0018 Score=63.58 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
+.-++|.|+||+||||+|+.+|..+|... +++.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 35789999999999999999999998764 5555554
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.73 E-value=0.18 Score=53.87 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=44.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeehhhhhhh-------hh-------------chhHHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSSATLASK-------WR-------------GESERMVRCLFDL 325 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~~~l~~~-------~~-------------g~~e~~l~~~f~~ 325 (522)
++.-++++|++|+||||++..+|..+ |..+..+++...... +. ..........+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 34679999999999999988887664 456666665432110 00 0112333455555
Q ss_pred HHhhCCcEEEEechh
Q 009911 326 ARAYAPSTIFIDEID 340 (522)
Q Consensus 326 a~~~~p~VL~IDEiD 340 (522)
+......+|+||=.-
T Consensus 178 ~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 178 AKENGFDVVIVDTAG 192 (428)
T ss_pred HHhcCCCEEEEeCCC
Confidence 555556789888763
No 417
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.72 E-value=0.0016 Score=63.05 Aligned_cols=30 Identities=33% Similarity=0.672 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.|+++||||+||||+++.||..+|..++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999877765
No 418
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0085 Score=57.39 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~ 293 (522)
.-+.|+||+|+|||||.|+|..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999964
No 419
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.71 E-value=0.0061 Score=63.59 Aligned_cols=23 Identities=48% Similarity=0.624 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
-+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 420
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.70 E-value=0.004 Score=66.53 Aligned_cols=93 Identities=19% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCce-EEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh-hhhh-h
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKG-VLMFGPPGTGKTLLAKAVATECGTTFFNVSSA-TLAS-K 310 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~-vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~-~l~~-~ 310 (522)
..+|+++.........+...+..| .| +|++||.|+||||...++.++++.+...+... +-.. .
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~p--------------~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~ 299 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNRP--------------QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ 299 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhCC--------------CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee
Confidence 566788888888888888877654 35 67789999999999999999997654432211 1000 0
Q ss_pred hh--------chhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 311 WR--------GESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 311 ~~--------g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
.. ..........++....+.|.||+|.||-
T Consensus 300 ~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 300 LPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred cCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 00 0111123444555556789999999994
No 421
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.70 E-value=0.024 Score=52.35 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHhCC----cEEEeeh
Q 009911 272 KGVLMFGPPGTGKTL-LAKAVATECGT----TFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~-LAraiA~~lg~----~~i~v~~ 304 (522)
+++++.||+|+|||+ ++..+...+.. .++.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 489999999999999 55555555432 3555544
No 422
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.68 E-value=0.014 Score=54.93 Aligned_cols=74 Identities=28% Similarity=0.455 Sum_probs=41.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-------------CcEEEeehhh----hhhhhh---ch-----------------
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG-------------TTFFNVSSAT----LASKWR---GE----------------- 314 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg-------------~~~i~v~~~~----l~~~~~---g~----------------- 314 (522)
.-++|+||+|+|||+++-.+|..+- ..++.++... +...+. +.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 4589999999999999998876551 2555554321 111000 00
Q ss_pred ------------hHHHHHHHHHHHHh-hCCcEEEEechhhhhhc
Q 009911 315 ------------SERMVRCLFDLARA-YAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 315 ------------~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 345 (522)
....+..+.+.+.. +.+.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 12223445555555 57899999999998865
No 423
>PRK04040 adenylate kinase; Provisional
Probab=96.67 E-value=0.0021 Score=61.02 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC--GTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l--g~~~i~v 302 (522)
.-++|+|+|||||||+++.++..+ +..++..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 478999999999999999999999 5665433
No 424
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.66 E-value=0.027 Score=54.74 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.+...++|.|+||+|||+++..++... |..++.++
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 345679999999999999999876433 44555554
No 425
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0015 Score=60.33 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=27.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.++++|.|||||||+++.++ ++|..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 58899999999999999999 9998888765
No 426
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.66 E-value=0.0047 Score=63.43 Aligned_cols=68 Identities=21% Similarity=0.445 Sum_probs=45.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEee-hhhhhh------hhhchhHHHHHHHHHHHHhhCCcEEEEech
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVS-SATLAS------KWRGESERMVRCLFDLARAYAPSTIFIDEI 339 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~-~~~l~~------~~~g~~e~~l~~~f~~a~~~~p~VL~IDEi 339 (522)
.+++++|++|+||||++++++..+ ...++.+. ..++.- .+....+..+..++..+..+.|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 589999999999999999999874 12333222 111110 000011223567778888899999999999
No 427
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.65 E-value=0.0057 Score=63.08 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
+.|+|.|++|+|||||++.++..++.+++.-.+.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 4799999999999999999999999988776655444
No 428
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0092 Score=55.32 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhh-------chhHHHHHHHHHHHHhhC-CcEEEE
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWR-------GESERMVRCLFDLARAYA-PSTIFI 336 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~-------g~~e~~l~~~f~~a~~~~-p~VL~I 336 (522)
..+.-|.|+|.+|+||||+|.++...| |..++.++..++..... ..-..+++.+-..|+.+. .++|.|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~ivi 99 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVI 99 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEE
Confidence 333568899999999999999999887 88999999887764322 112345666666666443 244443
No 429
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.64 E-value=0.0061 Score=63.91 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
..++|+||+|+|||+|++.|++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4699999999999999999999864
No 430
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.64 E-value=0.0031 Score=64.54 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=31.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.+...|+|+|.+|||||++++.+|..+|.+|+.++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 45568999999999999999999999999999654
No 431
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.63 E-value=0.022 Score=62.13 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=52.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh--------------hh--------------chhHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK--------------WR--------------GESER 317 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~--------------~~--------------g~~e~ 317 (522)
.+...+|+.||||+|||+|+-.++... |-+.+.++..+-... +. ...+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 344579999999999999999987755 545555553221110 00 01145
Q ss_pred HHHHHHHHHHhhCCcEEEEechhhhhh
Q 009911 318 MVRCLFDLARAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 318 ~l~~~f~~a~~~~p~VL~IDEiD~l~~ 344 (522)
.+..+.+......|.+|+||-+..+..
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 667777777788899999999988754
No 432
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.62 E-value=0.021 Score=53.43 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=32.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
-|+|.|++-+|||+||++|...+..+|+.++...+..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 5899999999999999999999999999999887765
No 433
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0078 Score=58.95 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
-+.|.||+||||||+.+.|-+..
T Consensus 29 f~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47889999999999999997655
No 434
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.57 E-value=0.0018 Score=56.35 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l 295 (522)
|+|.|+||+||||+|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 435
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.57 E-value=0.0057 Score=66.48 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeeh-hhhh-
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---TFFNVSS-ATLA- 308 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~-~~l~- 308 (522)
..+++++.-.++..+.|..++..+- .-+|++||+|+||||+.+++...+.. .++.+.- .++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~~~-------------GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~ 284 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRRPH-------------GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI 284 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-------------CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence 4567777767777888877665431 23789999999999999988777742 3433321 1110
Q ss_pred ----h-hhhchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 309 ----S-KWRGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 309 ----~-~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
. ............++..+....|.+|+|.||-
T Consensus 285 ~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 285 EGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred CCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 0001111224445556667889999999993
No 436
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.56 E-value=0.006 Score=64.65 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
+.|.|+|++|||||||+++||..+|..++.-
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E 250 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAWE 250 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeeee
Confidence 5799999999999999999999999876543
No 437
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.55 E-value=0.0019 Score=58.72 Aligned_cols=32 Identities=38% Similarity=0.646 Sum_probs=25.8
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 276 MFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 276 L~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
|.||||+|||++|+.||..+|... ++..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHHH
Confidence 679999999999999999998654 55555543
No 438
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.55 E-value=0.018 Score=53.83 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+...+.|.||+|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44578999999999999999999876
No 439
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.55 E-value=0.021 Score=54.82 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
+-++|+||.|+|||++.+.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998733
No 440
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.55 E-value=0.0047 Score=64.02 Aligned_cols=69 Identities=20% Similarity=0.405 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeeh-hhhhh--h------h----hchhHHHHHHHHHHHHhhCCcEEE
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSS-ATLAS--K------W----RGESERMVRCLFDLARAYAPSTIF 335 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~-~~l~~--~------~----~g~~e~~l~~~f~~a~~~~p~VL~ 335 (522)
..++|+.||+|+||||++++++..+.. .++.+.- .++.- . + .+........++..+....|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 358999999999999999999988743 2332211 11110 0 0 011122355677777788999999
Q ss_pred Eech
Q 009911 336 IDEI 339 (522)
Q Consensus 336 IDEi 339 (522)
+.|+
T Consensus 242 vGEi 245 (344)
T PRK13851 242 LGEM 245 (344)
T ss_pred EEee
Confidence 9999
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.55 E-value=0.0029 Score=64.75 Aligned_cols=70 Identities=19% Similarity=0.362 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEee-hhhhhh---hh---------hchhHHHHHHHHHHHHhhCCcEEE
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVS-SATLAS---KW---------RGESERMVRCLFDLARAYAPSTIF 335 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~-~~~l~~---~~---------~g~~e~~l~~~f~~a~~~~p~VL~ 335 (522)
..++++.||+|+||||++++++..+.. .++.+. ..++.- .. .+...-.+..++..+....|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 359999999999999999999988732 222221 111100 00 011122355677777778999999
Q ss_pred Eechh
Q 009911 336 IDEID 340 (522)
Q Consensus 336 IDEiD 340 (522)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99993
No 442
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.54 E-value=0.016 Score=59.54 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeehh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSSA 305 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~~ 305 (522)
...-++|+||||+|||+++-.+|..+ +..+++++..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te 145 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTE 145 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCC
Confidence 34568899999999999999998664 2356666643
No 443
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.024 Score=51.73 Aligned_cols=70 Identities=26% Similarity=0.344 Sum_probs=42.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEeehhhhhh-------h-------hhchhHHHHHHHHHHHHhhCCcE
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTT--FFNVSSATLAS-------K-------WRGESERMVRCLFDLARAYAPST 333 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~--~i~v~~~~l~~-------~-------~~g~~e~~l~~~f~~a~~~~p~V 333 (522)
+...+.|.|+.|+|||+|+++|+..+... -+.++...+.. . +.+. ...+-.+..+-...|.+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G--~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG--QRQRVALARALLLNPDL 101 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH--HHHHHHHHHHHhcCCCE
Confidence 33578999999999999999999876321 12222211100 0 1111 11222344555567999
Q ss_pred EEEechhh
Q 009911 334 IFIDEIDS 341 (522)
Q Consensus 334 L~IDEiD~ 341 (522)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999953
No 444
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.52 E-value=0.01 Score=55.05 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
-++++|+||+|||+++..+|..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 36899999999999999998876 5566666544
No 445
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.51 E-value=0.0011 Score=69.12 Aligned_cols=61 Identities=28% Similarity=0.412 Sum_probs=49.7
Q ss_pred hhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 218 PDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
|++.+.++--.+.-...++++|..-.+.+++.|.+.. .|+|+.||||.||||+|.++|..+
T Consensus 227 PPfSd~~EITavRPvvk~~ledY~L~dkl~eRL~era-----------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 227 PPFSDRWEITAVRPVVKLSLEDYGLSDKLKERLEERA-----------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred CCCCCceEEEEEeeeEEechhhcCCCHHHHHHHHhhh-----------------cceEEecCCCCChhHHHHHHHHHH
Confidence 4566666655555566778888888899999888844 499999999999999999999887
No 446
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.50 E-value=0.063 Score=57.18 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
++.-|+|+|++|+||||++..+|..+ |..+..+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 34678999999999999999999877 6666666553
No 447
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.49 E-value=0.031 Score=51.99 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-+.|.||.|+|||+|++.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33468999999999999999999876
No 448
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.48 E-value=0.0098 Score=56.75 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=41.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEeehhhhhhhhhc------------------hhHHHHHHHHHHHHhhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC-GTTFFNVSSATLASKWRG------------------ESERMVRCLFDLARAYA 330 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l-g~~~i~v~~~~l~~~~~g------------------~~e~~l~~~f~~a~~~~ 330 (522)
.+.-++|.|+||+|||+++..+...+ +..++.++...+...... ........+++.+....
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~ 93 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENR 93 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34678999999999999999999998 777888887766543221 11223445566666666
Q ss_pred CcEEE
Q 009911 331 PSTIF 335 (522)
Q Consensus 331 p~VL~ 335 (522)
..|||
T Consensus 94 ~nii~ 98 (199)
T PF06414_consen 94 YNIIF 98 (199)
T ss_dssp --EEE
T ss_pred CCEEE
Confidence 66665
No 449
>PRK01184 hypothetical protein; Provisional
Probab=96.48 E-value=0.0026 Score=59.72 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
-|+|+|+||+||||+++ +++++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999888665
No 450
>PRK14527 adenylate kinase; Provisional
Probab=96.48 E-value=0.0024 Score=60.47 Aligned_cols=31 Identities=39% Similarity=0.633 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.-++++||||+||||+|+.+|..++...+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 4699999999999999999999998766544
No 451
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.48 E-value=0.0034 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l 295 (522)
+.+.|++|+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999996
No 452
>PRK04182 cytidylate kinase; Provisional
Probab=96.47 E-value=0.0027 Score=58.99 Aligned_cols=30 Identities=33% Similarity=0.598 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.|+|.|++|||||++++.+|..+|.+++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 488999999999999999999999988763
No 453
>PLN02840 tRNA dimethylallyltransferase
Probab=96.45 E-value=0.017 Score=61.22 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
.-++|.||+|+|||+|+..||..++..++.++.-.+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 368899999999999999999999998888876544
No 454
>PLN02674 adenylate kinase
Probab=96.44 E-value=0.0032 Score=62.09 Aligned_cols=35 Identities=23% Similarity=0.521 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
..++|.||||+||+|+++.||..+|..++ +..++.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gdll 66 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDML 66 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHH
Confidence 47999999999999999999999996555 444443
No 455
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.017 Score=53.70 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSAT 306 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~ 306 (522)
+.-++|.|+||+|||++++.++..+ +..+..++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 3478899999999999999999988 33455555543
No 456
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.43 E-value=0.019 Score=53.72 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+...+.|.||+|+|||||++.|+...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999999876
No 457
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.42 E-value=0.075 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+...++|+|++|+|||++++.++..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l 99 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 44689999999999999999998876
No 458
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.41 E-value=0.0031 Score=58.10 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
-|+|+|++|+|||++|+.++..+|.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999999887664
No 459
>PRK14526 adenylate kinase; Provisional
Probab=96.41 E-value=0.0034 Score=60.67 Aligned_cols=29 Identities=31% Similarity=0.631 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
.++|+||||+||||+++.+|..++..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48899999999999999999999876654
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.41 E-value=0.036 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
-.+|+||+|+|||+|+..+|-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 3589999999999999999864
No 461
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.41 E-value=0.063 Score=49.38 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=69.6
Q ss_pred EcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHH
Q 009911 277 FGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSR 356 (522)
Q Consensus 277 ~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~ 356 (522)
.+.+||||||++.++++.+|- +-.+...++.++ ...+.+..+.+........++|+|-=..+ .
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~-------------~ 67 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ-------------K 67 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch-------------H
Confidence 588999999999999999983 222333444333 33445556666654445568888854332 2
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHh--------hcc--cccccCCCCHHHHHHHHHHHHc
Q 009911 357 RVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--------RLE--KRIYIPLPNFESRKELIKINLK 426 (522)
Q Consensus 357 ~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~r--------Rf~--~~i~i~~Pd~~~R~~Ilk~~l~ 426 (522)
+...+|+..++......- .....+-+||-.=..+.-.+.+++ |=+ ..|.....+...-..|+..++.
T Consensus 68 reR~ql~~~~~~~~~~yl---~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~ 144 (168)
T PF08303_consen 68 RERKQLFEDVSQLKPDYL---PYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIK 144 (168)
T ss_pred HHHHHHHHHHHHhccccc---ccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHH
Confidence 333555555554433110 011124455544322222233332 222 2344444556667777777775
Q ss_pred cC
Q 009911 427 TV 428 (522)
Q Consensus 427 ~~ 428 (522)
..
T Consensus 145 rf 146 (168)
T PF08303_consen 145 RF 146 (168)
T ss_pred hc
Confidence 54
No 462
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.39 E-value=0.026 Score=52.17 Aligned_cols=26 Identities=42% Similarity=0.618 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-+.|.||.|+|||||++.++..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999876
No 463
>PRK08233 hypothetical protein; Provisional
Probab=96.39 E-value=0.0037 Score=58.24 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC-CcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECG-TTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg-~~~i~v~ 303 (522)
-|.+.|+||+||||+|+.|+..++ ..++.++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 577889999999999999999986 4444444
No 464
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.37 E-value=0.01 Score=67.90 Aligned_cols=71 Identities=23% Similarity=0.268 Sum_probs=42.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh----hchhHHHHHHHH-HHHH----hhCCcEEEEech
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW----RGESERMVRCLF-DLAR----AYAPSTIFIDEI 339 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~----~g~~e~~l~~~f-~~a~----~~~p~VL~IDEi 339 (522)
+-++|.|++|||||++++++...+ |..++.+.++...... .|.....+..+. .... .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 467899999999999999987554 6677766554432221 121112233321 1111 123579999999
Q ss_pred hhh
Q 009911 340 DSL 342 (522)
Q Consensus 340 D~l 342 (522)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 543
No 465
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.03 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+...+.|.||.|+|||||++.++..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999865
No 466
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.36 E-value=0.0033 Score=63.82 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-GTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-g~~~i~v 302 (522)
.-++|.|+|||||||+|+.++..+ +..++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 358899999999999999999999 6555544
No 467
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.35 E-value=0.018 Score=58.01 Aligned_cols=63 Identities=27% Similarity=0.405 Sum_probs=40.0
Q ss_pred hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHh--hc--
Q 009911 328 AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RL-- 403 (522)
Q Consensus 328 ~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~r--Rf-- 403 (522)
...|.||++||.-+-+ +.-.-..++.+||..-..+..+ ++|| | ++||++|+= |+
T Consensus 180 a~~~~IlLMDEaFSAL-------DPLIR~~mQdeLl~Lq~~l~KT----------IvFi-t----HDLdEAlriG~rIai 237 (386)
T COG4175 180 ANDPDILLMDEAFSAL-------DPLIRTEMQDELLELQAKLKKT----------IVFI-T----HDLDEALRIGDRIAI 237 (386)
T ss_pred ccCCCEEEecCchhhc-------ChHHHHHHHHHHHHHHHHhCCe----------EEEE-e----cCHHHHHhccceEEE
Confidence 4458899999985433 2334567888888777665532 3443 3 678999875 43
Q ss_pred ---ccccccCCC
Q 009911 404 ---EKRIYIPLP 412 (522)
Q Consensus 404 ---~~~i~i~~P 412 (522)
.+.+.+..|
T Consensus 238 mkdG~ivQ~Gtp 249 (386)
T COG4175 238 MKDGEIVQVGTP 249 (386)
T ss_pred ecCCeEEEeCCH
Confidence 345555555
No 468
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.34 E-value=0.0054 Score=58.62 Aligned_cols=38 Identities=34% Similarity=0.499 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK 310 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~ 310 (522)
-++|+||+|||||.+|-++|+.+|.+++..+.-.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 47899999999999999999999999999997665543
No 469
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.33 E-value=0.028 Score=55.72 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
..+-|+|.+||||||+++.|.....
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcC
Confidence 4688999999999999999998774
No 470
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=96.33 E-value=0.04 Score=43.92 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009911 9 GLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAE 76 (522)
Q Consensus 9 ~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i~~~ 76 (522)
+..+-++.|-|+-..|+|..|++||+.+++.+-+.+....|...+.- .++.|++=.+.++.|.+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~---yr~ki~eY~~Rae~Lk~~ 69 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI---YEQMINEYKRRIEVLEKQ 69 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999887655 455555555555555444
No 471
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.32 E-value=0.029 Score=57.32 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeehhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSSAT 306 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~~~ 306 (522)
..-++|+||||+|||+++-.+|..+ +..+++++...
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 3457899999999999999998664 23666666443
No 472
>PLN02199 shikimate kinase
Probab=96.31 E-value=0.0043 Score=62.52 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=30.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
..+|+|+|.+|+|||++++.+|+.+|.+|+..+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 3589999999999999999999999999987763
No 473
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.047 Score=59.41 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
...++|+||+|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998764
No 474
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.023 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
-.-|.||+||||||+.|++-+..
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhc
Confidence 45688999999999999986554
No 475
>PRK06696 uridine kinase; Validated
Probab=96.29 E-value=0.0044 Score=60.29 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL 307 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l 307 (522)
.-|.+.|++|+||||||+.|+..+ |.+++.++..++
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 468899999999999999999999 667777665544
No 476
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.29 E-value=0.021 Score=64.87 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEeehhhhhh-hh---------------hchhHHHHHHHHHHHHhhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATE---CGTTFFNVSSATLAS-KW---------------RGESERMVRCLFDLARAYA 330 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~---lg~~~i~v~~~~l~~-~~---------------~g~~e~~l~~~f~~a~~~~ 330 (522)
...-++|+||+|||||+|+..++.. .|..++.++...... .+ ....+..+..+-...+...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~ 138 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 3456889999999999999765443 355566655433111 00 0112333333333344557
Q ss_pred CcEEEEechhhhhh
Q 009911 331 PSTIFIDEIDSLCN 344 (522)
Q Consensus 331 p~VL~IDEiD~l~~ 344 (522)
+.+|+||-|..++.
T Consensus 139 ~~LVVIDSI~aL~~ 152 (790)
T PRK09519 139 LDIVVIDSVAALVP 152 (790)
T ss_pred CeEEEEcchhhhcc
Confidence 89999999999885
No 477
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.28 E-value=0.037 Score=57.37 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeeh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSS 304 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~ 304 (522)
...-+.|+|+||||||.|+..+|-.. +..+++++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdT 168 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDT 168 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEc
Confidence 33457799999999999999887432 245666664
No 478
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.27 E-value=0.039 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~ 293 (522)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 479
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.26 E-value=0.0041 Score=58.64 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
..++|.||+|+|||||++.|+..++..|+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 368999999999999999999988766544
No 480
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.26 E-value=0.013 Score=61.01 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.++|+||+|||||+|++.+++.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998873
No 481
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.26 E-value=0.037 Score=56.79 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeehh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSSA 305 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~~ 305 (522)
...-+.|+||||+|||.|+..+|-.. +..+++++..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE 139 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE 139 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC
Confidence 33457899999999999999877422 3466666643
No 482
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.25 E-value=0.032 Score=54.40 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
-.|=|.|++|+|||||.+.||...
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCcc
Confidence 468899999999999999999877
No 483
>PTZ00035 Rad51 protein; Provisional
Probab=96.24 E-value=0.038 Score=57.29 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
...-+.|+|++|+|||+|+..+|..+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh
Confidence 33457799999999999999987543
No 484
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.23 E-value=0.0061 Score=58.56 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009911 274 VLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~l 295 (522)
.+++||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998666665554
No 485
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.22 E-value=0.04 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
+.++++||.|+|||++.++++-.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998543
No 486
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.22 E-value=0.013 Score=59.15 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=31.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
++|.||+|+|||+||..+|..++..++.++.-.+.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY 36 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIY 36 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhee
Confidence 68999999999999999999999999888775544
No 487
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.20 E-value=0.044 Score=59.74 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATE----CGTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~----lg~~~i~v~ 303 (522)
.+...+||.|+||||||+||..++.. .|-+.+.++
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44568999999999999999988543 255655555
No 488
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.19 E-value=0.015 Score=67.86 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=58.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH---hCCcEEEeehhhhhhhh----hchhHHHHHHHHHHHH-----hhCCcEEEEechh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE---CGTTFFNVSSATLASKW----RGESERMVRCLFDLAR-----AYAPSTIFIDEID 340 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~---lg~~~i~v~~~~l~~~~----~g~~e~~l~~~f~~a~-----~~~p~VL~IDEiD 340 (522)
-++|.|++||||||+++++... .|..++-+.++.....- .|.....+..++.... .....||+|||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 4679999999999998876544 47677766655433221 2222344444432111 1234699999994
Q ss_pred hhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc
Q 009911 341 SLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID 396 (522)
Q Consensus 341 ~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld 396 (522)
.+ ..+.+..|+...... ...|++|+=......+.
T Consensus 444 Mv------------~~~~m~~LL~~a~~~----------garvVLVGD~~QLpsV~ 477 (988)
T PRK13889 444 MV------------GTRQLERVLSHAADA----------GAKVVLVGDPQQLQAIE 477 (988)
T ss_pred cC------------CHHHHHHHHHhhhhC----------CCEEEEECCHHHcCCCC
Confidence 43 233445565544321 13377777766544443
No 489
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.19 E-value=0.0093 Score=61.34 Aligned_cols=53 Identities=26% Similarity=0.356 Sum_probs=41.4
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
+++.|+++++..|.+++.. ..++.....+-++|.||+|+|||+|++.+.+-+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~------AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKS------AAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHH------HHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3899999999999987753 2223333335788999999999999999988873
No 490
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.0062 Score=61.73 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=34.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
+-++|+||+++|||-||-.+|+.+|..+++++.-.+..
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr 41 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYR 41 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcC
Confidence 46899999999999999999999999999999876653
No 491
>PRK10436 hypothetical protein; Provisional
Probab=96.17 E-value=0.012 Score=63.44 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=59.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEee-hhhhhh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---TFFNVS-SATLAS 309 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~-~~~l~~ 309 (522)
..+++++.-.+...+.+.+++..+ ..-||++||+|+||||+..++..+++. .++.+. +.+..-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~~-------------~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQP-------------QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHhc-------------CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 346777777777777787776543 235889999999999999888777743 333332 111100
Q ss_pred h------hhchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 310 K------WRGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 310 ~------~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
. ...........++..+....|.||+|.||-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 0 000111224555666667889999999993
No 492
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.17 E-value=0.012 Score=58.87 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=44.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC----cEEEee-h--------hhh-hhhhhchhHHHHHHHHHHHHhhCCcEEEEec
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT----TFFNVS-S--------ATL-ASKWRGESERMVRCLFDLARAYAPSTIFIDE 338 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~----~~i~v~-~--------~~l-~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDE 338 (522)
=||++||.|+||||..-++-..++. +++.+. + ..+ ...-.|.........+..|-...|.||++-|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEec
Confidence 3778899999999988888777754 333332 1 111 1223344444455666677777899999999
Q ss_pred hh
Q 009911 339 ID 340 (522)
Q Consensus 339 iD 340 (522)
+-
T Consensus 207 mR 208 (353)
T COG2805 207 MR 208 (353)
T ss_pred cc
Confidence 94
No 493
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.16 E-value=0.026 Score=53.58 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+...+.|.||+|+|||+|++.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999876
No 494
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.15 E-value=0.0054 Score=54.69 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
+..-++|.|+.|+|||++++.+++.+|..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 33578999999999999999999999864
No 495
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.15 E-value=0.059 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
-|.+|+++|.|||++|-.+|-+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999987665
No 496
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=96.12 E-value=0.084 Score=41.30 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 009911 7 LVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLD 74 (522)
Q Consensus 7 ~~~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i~ 74 (522)
+..-.+-++.|.++--.|+|+.|+.+|..+++.+...+..-.|+..++.++ +.+.+=.+....|.
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~---~k~~~yl~RAE~lk 66 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALR---QKMKEYLERAEKLK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999988888777744 44444444444443
No 497
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.11 E-value=0.043 Score=64.83 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=48.1
Q ss_pred EEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC--CccHHHHhhcccccccC
Q 009911 333 TIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW--DIDEALRRRLEKRIYIP 410 (522)
Q Consensus 333 VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~--~ld~aL~rRf~~~i~i~ 410 (522)
||+|||+..|.... .+.+ ..++..|-... ..-.|.+|.+|.+|. .|...++.-|..+|.|.
T Consensus 1143 VVIIDE~AdLm~~~--------~kev-E~lI~rLAqkG--------RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfr 1205 (1355)
T PRK10263 1143 VVLVDEFADLMMTV--------GKKV-EELIARLAQKA--------RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 1205 (1355)
T ss_pred EEEEcChHHHHhhh--------hHHH-HHHHHHHHHHh--------hhcCeEEEEEecCcccccchHHHHhhccceEEEE
Confidence 79999998776431 1122 22222222211 122388888898885 56777788888889999
Q ss_pred CCCHHHHHHHHHH
Q 009911 411 LPNFESRKELIKI 423 (522)
Q Consensus 411 ~Pd~~~R~~Ilk~ 423 (522)
.-+..+-..||-.
T Consensus 1206 VsS~~DSrtILd~ 1218 (1355)
T PRK10263 1206 VSSKIDSRTILDQ 1218 (1355)
T ss_pred cCCHHHHHHhcCC
Confidence 9888887777753
No 498
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.10 E-value=0.038 Score=61.65 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+-++|+|+|||||||+++.+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 368999999999999998876654
No 499
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.10 E-value=0.014 Score=53.21 Aligned_cols=67 Identities=27% Similarity=0.281 Sum_probs=46.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhH--------HHHH---HHHHHHHhhCCcEEEEec
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESE--------RMVR---CLFDLARAYAPSTIFIDE 338 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e--------~~l~---~~f~~a~~~~p~VL~IDE 338 (522)
+-|-|.||--||||+||+.+|+.++.++...-.-.......+..+ +++. ...+.+..+++.|+|||=
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av~~a~~v~fiDT 86 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYANKVAFIDT 86 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHhCCCchhHHHHHHHHHHhCCchhhhhccHHHHHhhhHHHHHHHHhCCCceEEEec
Confidence 578899999999999999999999998876655544433333322 1111 223455567788999983
No 500
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.09 E-value=0.0084 Score=55.85 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
++.-++|.|++|+||||+++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999985
Done!