Query 009911
Match_columns 522
No_of_seqs 462 out of 3028
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.6E-49 5.3E-54 412.2 23.7 253 224-502 134-391 (405)
2 4b4t_H 26S protease regulatory 100.0 1.5E-47 5.1E-52 401.9 25.2 265 226-516 197-467 (467)
3 4b4t_I 26S protease regulatory 100.0 4.8E-48 1.6E-52 402.1 20.0 256 227-508 171-431 (437)
4 4b4t_L 26S protease subunit RP 100.0 2.6E-47 8.8E-52 401.4 23.0 263 224-512 167-434 (437)
5 4b4t_M 26S protease regulatory 100.0 7.1E-47 2.4E-51 397.7 25.2 256 225-506 168-428 (434)
6 2zan_A Vacuolar protein sortin 100.0 3.8E-47 1.3E-51 404.9 20.9 296 218-521 114-442 (444)
7 4b4t_K 26S protease regulatory 100.0 2.5E-46 8.4E-51 393.3 24.0 258 227-510 161-425 (428)
8 3cf2_A TER ATPase, transitiona 100.0 3.3E-48 1.1E-52 434.1 9.4 286 228-521 467-764 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.4E-44 4.9E-49 369.6 28.8 286 228-521 2-320 (322)
10 2qp9_X Vacuolar protein sortin 100.0 7.1E-44 2.4E-48 369.3 28.5 296 218-521 31-352 (355)
11 3eie_A Vacuolar protein sortin 100.0 6.5E-44 2.2E-48 364.6 27.0 287 227-521 7-319 (322)
12 3cf0_A Transitional endoplasmi 100.0 7.5E-41 2.6E-45 338.8 25.2 287 226-520 3-301 (301)
13 3vfd_A Spastin; ATPase, microt 100.0 1.5E-40 5.1E-45 348.4 23.2 296 214-522 91-387 (389)
14 3cf2_A TER ATPase, transitiona 100.0 4.4E-41 1.5E-45 376.7 17.3 265 230-504 196-463 (806)
15 3d8b_A Fidgetin-like protein 1 100.0 1.7E-39 6E-44 336.6 27.3 298 212-522 58-356 (357)
16 3b9p_A CG5977-PA, isoform A; A 100.0 5.9E-39 2E-43 323.2 24.8 291 219-521 2-293 (297)
17 2x8a_A Nuclear valosin-contain 100.0 7.7E-38 2.6E-42 312.6 22.1 263 231-509 3-273 (274)
18 3h4m_A Proteasome-activating n 100.0 1.5E-34 5.3E-39 289.0 27.1 268 229-522 8-282 (285)
19 3hu3_A Transitional endoplasmi 100.0 1.4E-33 4.6E-38 303.0 20.7 265 233-507 199-466 (489)
20 1lv7_A FTSH; alpha/beta domain 100.0 1.6E-32 5.3E-37 270.8 25.4 248 228-502 2-254 (257)
21 2ce7_A Cell division protein F 100.0 1.5E-32 5.1E-37 293.0 27.1 243 232-501 10-257 (476)
22 1ypw_A Transitional endoplasmi 100.0 1.8E-36 6.2E-41 343.8 -5.0 285 228-520 467-763 (806)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 8.2E-32 2.8E-36 265.3 18.5 242 233-501 1-250 (262)
24 1ixz_A ATP-dependent metallopr 100.0 9.1E-31 3.1E-35 257.7 24.1 243 228-497 6-253 (254)
25 2dhr_A FTSH; AAA+ protein, hex 100.0 5.7E-31 2E-35 282.3 20.3 243 233-502 26-273 (499)
26 1iy2_A ATP-dependent metallopr 100.0 2.9E-29 1E-33 250.5 26.9 242 229-497 31-277 (278)
27 2r62_A Cell division protease 100.0 2.1E-32 7.1E-37 271.3 -0.2 253 230-508 3-261 (268)
28 2rpa_A Katanin P60 ATPase-cont 100.0 8.9E-29 3.1E-33 195.5 9.0 71 5-75 7-77 (78)
29 1ypw_A Transitional endoplasmi 100.0 1.3E-27 4.5E-32 271.2 22.2 263 231-503 197-462 (806)
30 3t15_A Ribulose bisphosphate c 99.9 4.9E-25 1.7E-29 222.0 15.8 179 269-453 34-222 (293)
31 3syl_A Protein CBBX; photosynt 99.9 1.4E-21 4.7E-26 197.1 15.6 213 239-468 32-268 (309)
32 3uk6_A RUVB-like 2; hexameric 99.9 4.7E-21 1.6E-25 197.9 18.6 232 234-513 40-344 (368)
33 2c9o_A RUVB-like 1; hexameric 99.8 1.5E-20 5.1E-25 200.6 18.6 107 233-347 32-143 (456)
34 1ofh_A ATP-dependent HSL prote 99.8 2.3E-20 8E-25 187.5 15.9 251 239-501 16-300 (310)
35 3pfi_A Holliday junction ATP-d 99.8 3.5E-19 1.2E-23 181.9 23.5 211 226-464 17-236 (338)
36 1g41_A Heat shock protein HSLU 99.8 6.1E-19 2.1E-23 185.7 19.8 259 239-512 16-442 (444)
37 3m6a_A ATP-dependent protease 99.8 4E-20 1.4E-24 201.2 8.1 237 237-501 80-342 (543)
38 1hqc_A RUVB; extended AAA-ATPa 99.8 2.8E-18 9.6E-23 173.8 20.0 206 230-462 4-218 (324)
39 1d2n_A N-ethylmaleimide-sensit 99.8 2.5E-18 8.5E-23 170.5 15.3 206 238-458 33-245 (272)
40 3hws_A ATP-dependent CLP prote 99.8 7.5E-18 2.6E-22 174.2 18.4 227 240-466 17-326 (363)
41 2chg_A Replication factor C sm 99.8 2.9E-17 9.9E-22 155.5 21.1 206 228-498 7-224 (226)
42 2z4s_A Chromosomal replication 99.8 3.2E-17 1.1E-21 173.9 22.9 200 233-463 100-314 (440)
43 3u61_B DNA polymerase accessor 99.8 2.5E-17 8.5E-22 167.3 20.0 191 227-458 15-219 (324)
44 3pvs_A Replication-associated 99.8 5.1E-18 1.8E-22 180.2 14.8 215 227-501 15-245 (447)
45 1l8q_A Chromosomal replication 99.7 1.6E-16 5.3E-21 161.6 24.1 198 232-461 5-214 (324)
46 1njg_A DNA polymerase III subu 99.7 2.2E-17 7.5E-22 158.1 16.6 209 227-498 12-249 (250)
47 1jbk_A CLPB protein; beta barr 99.7 5.5E-18 1.9E-22 156.7 11.8 169 224-421 8-194 (195)
48 3pxg_A Negative regulator of g 99.7 8.7E-18 3E-22 179.7 13.8 198 222-463 164-386 (468)
49 2v1u_A Cell division control p 99.7 2.5E-16 8.4E-21 162.6 22.7 205 236-465 17-259 (387)
50 1in4_A RUVB, holliday junction 99.7 1E-15 3.6E-20 156.5 26.9 228 228-501 15-251 (334)
51 1sxj_A Activator 1 95 kDa subu 99.7 2.6E-17 8.8E-22 178.2 15.4 198 226-445 27-243 (516)
52 3bos_A Putative DNA replicatio 99.7 2.2E-16 7.4E-21 152.0 20.3 205 234-498 24-241 (242)
53 1g8p_A Magnesium-chelatase 38 99.7 9.8E-17 3.4E-21 164.0 18.1 223 232-500 18-322 (350)
54 1um8_A ATP-dependent CLP prote 99.7 5.5E-17 1.9E-21 168.5 14.7 248 239-498 22-363 (376)
55 1r6b_X CLPA protein; AAA+, N-t 99.7 9.1E-17 3.1E-21 181.7 17.7 227 233-501 181-434 (758)
56 1sxj_D Activator 1 41 kDa subu 99.7 2.3E-16 7.7E-21 161.4 18.9 194 227-462 26-242 (353)
57 1iqp_A RFCS; clamp loader, ext 99.7 9.9E-16 3.4E-20 154.6 20.7 197 225-459 12-216 (327)
58 3pxi_A Negative regulator of g 99.7 6.9E-17 2.4E-21 182.6 13.6 201 221-465 163-388 (758)
59 4fcw_A Chaperone protein CLPB; 99.7 3.9E-16 1.3E-20 157.1 16.7 212 239-467 18-283 (311)
60 2p65_A Hypothetical protein PF 99.7 1.1E-16 3.7E-21 147.7 11.3 157 229-413 13-187 (187)
61 2qby_B CDC6 homolog 3, cell di 99.7 1.8E-15 6.3E-20 156.4 21.4 192 238-462 20-252 (384)
62 2chq_A Replication factor C sm 99.7 9.8E-16 3.4E-20 154.1 18.0 194 227-458 6-207 (319)
63 1fnn_A CDC6P, cell division co 99.7 8E-15 2.7E-19 151.6 25.3 210 236-472 15-264 (389)
64 1jr3_A DNA polymerase III subu 99.7 3E-15 1E-19 154.2 21.0 192 228-460 6-226 (373)
65 1qvr_A CLPB protein; coiled co 99.7 8.9E-17 3E-21 184.0 10.0 214 221-463 153-393 (854)
66 2r44_A Uncharacterized protein 99.7 6.4E-16 2.2E-20 157.4 15.2 171 229-427 18-200 (331)
67 1sxj_B Activator 1 37 kDa subu 99.7 3.4E-15 1.2E-19 150.4 18.9 191 227-459 10-213 (323)
68 2qby_A CDC6 homolog 1, cell di 99.6 6E-15 2.1E-19 151.9 20.7 205 235-465 17-255 (386)
69 1sxj_E Activator 1 40 kDa subu 99.6 2.5E-15 8.4E-20 154.1 16.8 195 227-460 3-242 (354)
70 3pxi_A Negative regulator of g 99.6 4.4E-15 1.5E-19 167.9 17.8 211 238-467 491-729 (758)
71 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.7E-15 6E-20 162.4 13.5 223 239-490 23-293 (500)
72 1r6b_X CLPA protein; AAA+, N-t 99.6 4E-15 1.4E-19 168.2 17.2 212 239-467 459-720 (758)
73 1sxj_C Activator 1 40 kDa subu 99.6 1.1E-14 3.8E-19 149.0 16.4 177 227-445 14-203 (340)
74 3te6_A Regulatory protein SIR3 99.5 7.3E-14 2.5E-18 141.3 16.8 160 240-428 22-214 (318)
75 1qvr_A CLPB protein; coiled co 99.5 7E-14 2.4E-18 160.0 15.3 214 237-467 557-824 (854)
76 2bjv_A PSP operon transcriptio 99.5 2.7E-13 9.2E-18 133.5 17.4 203 235-462 3-240 (265)
77 3f9v_A Minichromosome maintena 99.5 6.1E-15 2.1E-19 161.9 4.0 227 238-501 295-588 (595)
78 1a5t_A Delta prime, HOLB; zinc 99.4 3E-12 1E-16 130.8 17.5 173 242-456 6-206 (334)
79 3n70_A Transport activator; si 99.4 4E-13 1.4E-17 120.4 9.3 131 239-411 2-143 (145)
80 1ojl_A Transcriptional regulat 99.4 6.6E-13 2.3E-17 133.9 12.0 200 238-462 2-235 (304)
81 3vlf_B 26S protease regulatory 99.4 5.8E-13 2E-17 109.3 8.5 86 413-516 2-88 (88)
82 3k1j_A LON protease, ATP-depen 99.4 3.4E-12 1.2E-16 140.6 15.9 240 230-514 33-388 (604)
83 3co5_A Putative two-component 99.4 4.2E-13 1.4E-17 120.1 6.8 131 239-411 5-141 (143)
84 3aji_B S6C, proteasome (prosom 99.4 5.5E-13 1.9E-17 108.1 6.5 82 413-513 2-83 (83)
85 1w5s_A Origin recognition comp 99.4 2.4E-11 8.3E-16 126.4 19.5 246 236-499 20-319 (412)
86 3kw6_A 26S protease regulatory 99.3 2.9E-12 9.8E-17 102.6 8.2 75 410-502 1-75 (78)
87 2gno_A DNA polymerase III, gam 99.3 1.3E-11 4.3E-16 124.6 14.3 142 242-425 1-152 (305)
88 2krk_A 26S protease regulatory 99.3 2.9E-12 9.9E-17 104.5 7.0 78 408-503 7-84 (86)
89 3cmw_A Protein RECA, recombina 99.3 6.7E-12 2.3E-16 149.8 10.5 151 233-392 1015-1218(1706)
90 2dzn_B 26S protease regulatory 99.1 1E-11 3.5E-16 100.4 2.5 81 415-513 1-82 (82)
91 3ec2_A DNA replication protein 99.1 2E-10 6.9E-15 106.1 11.2 101 230-341 2-111 (180)
92 4akg_A Glutathione S-transfera 99.1 1.1E-10 3.7E-15 145.0 7.3 145 272-427 1268-1433(2695)
93 3f8t_A Predicted ATPase involv 99.0 3.5E-09 1.2E-13 111.2 13.2 219 240-502 215-485 (506)
94 2qen_A Walker-type ATPase; unk 98.9 1E-07 3.5E-12 96.2 20.6 192 232-456 6-247 (350)
95 2kjq_A DNAA-related protein; s 98.9 2E-09 6.9E-14 96.9 7.0 106 271-410 36-146 (149)
96 2fna_A Conserved hypothetical 98.9 5.3E-08 1.8E-12 98.5 17.5 188 232-456 7-251 (357)
97 2w58_A DNAI, primosome compone 98.8 9.1E-09 3.1E-13 96.5 10.2 101 232-342 19-127 (202)
98 1ny5_A Transcriptional regulat 98.7 5E-08 1.7E-12 101.5 12.1 198 237-461 136-369 (387)
99 2vhj_A Ntpase P4, P4; non- hyd 98.7 1E-08 3.5E-13 103.1 4.9 72 272-345 124-197 (331)
100 3dzd_A Transcriptional regulat 98.6 1.2E-07 3.9E-12 98.0 11.9 198 238-460 129-359 (368)
101 4akg_A Glutathione S-transfera 98.6 1.3E-06 4.4E-11 109.0 23.1 134 272-422 646-790 (2695)
102 2r2a_A Uncharacterized protein 98.6 2.4E-08 8.2E-13 94.2 5.0 126 273-414 7-155 (199)
103 2qgz_A Helicase loader, putati 98.6 3.5E-08 1.2E-12 99.4 5.3 99 233-342 119-226 (308)
104 1tue_A Replication protein E1; 98.5 7.9E-08 2.7E-12 90.5 5.8 115 272-412 59-179 (212)
105 3vkg_A Dynein heavy chain, cyt 98.4 2.8E-07 9.6E-12 115.6 8.2 142 272-426 1305-1470(3245)
106 3cmu_A Protein RECA, recombina 98.3 2.7E-06 9.2E-11 103.2 12.0 105 269-373 1425-1553(2050)
107 1u0j_A DNA replication protein 98.2 1.6E-06 5.6E-11 85.0 7.6 27 271-297 104-130 (267)
108 1jr3_D DNA polymerase III, del 98.1 2.9E-05 9.8E-10 78.8 15.0 154 271-458 18-188 (343)
109 1ye8_A Protein THEP1, hypothet 98.1 1.3E-05 4.5E-10 73.9 11.1 28 273-300 2-29 (178)
110 3vkg_A Dynein heavy chain, cyt 98.1 3E-05 1E-09 97.7 16.3 130 273-422 606-750 (3245)
111 1svm_A Large T antigen; AAA+ f 97.9 4.3E-06 1.5E-10 86.4 3.4 114 270-411 168-284 (377)
112 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00027 9.4E-09 66.5 13.7 34 270-303 22-58 (235)
113 1z6t_A APAF-1, apoptotic prote 97.7 0.00018 6E-09 78.3 13.2 176 234-455 120-328 (591)
114 3dm5_A SRP54, signal recogniti 97.6 0.00098 3.3E-08 69.9 16.2 71 270-340 99-192 (443)
115 1qhx_A CPT, protein (chloramph 97.6 0.00019 6.4E-09 65.2 8.9 36 272-307 4-39 (178)
116 3upu_A ATP-dependent DNA helic 97.6 0.00017 5.6E-09 76.4 9.4 67 226-305 12-83 (459)
117 2ehv_A Hypothetical protein PH 97.6 0.00078 2.7E-08 64.3 13.4 23 270-292 29-51 (251)
118 1xp8_A RECA protein, recombina 97.6 0.00027 9.2E-09 72.6 10.6 76 269-344 72-166 (366)
119 3hr8_A Protein RECA; alpha and 97.5 0.00029 1E-08 72.0 10.3 75 270-344 60-153 (356)
120 3sfz_A APAF-1, apoptotic pepti 97.5 0.00055 1.9E-08 80.5 14.0 174 233-449 119-323 (1249)
121 3cmu_A Protein RECA, recombina 97.5 0.00023 7.8E-09 86.6 10.7 104 269-372 730-857 (2050)
122 1n0w_A DNA repair protein RAD5 97.5 0.00039 1.3E-08 66.1 10.1 75 270-344 23-133 (243)
123 2cvh_A DNA repair and recombin 97.5 0.0005 1.7E-08 64.3 10.5 37 269-305 18-54 (220)
124 3trf_A Shikimate kinase, SK; a 97.4 8.8E-05 3E-09 67.9 4.3 32 272-303 6-37 (185)
125 2zr9_A Protein RECA, recombina 97.4 0.00035 1.2E-08 71.3 8.9 75 270-344 60-153 (349)
126 2z43_A DNA repair and recombin 97.4 0.0004 1.4E-08 70.0 9.2 77 269-345 105-218 (324)
127 3kl4_A SRP54, signal recogniti 97.4 0.0011 3.7E-08 69.5 12.5 71 270-340 96-189 (433)
128 2dr3_A UPF0273 protein PH0284; 97.3 0.0022 7.4E-08 61.0 13.0 35 269-303 21-58 (247)
129 1u94_A RECA protein, recombina 97.3 0.00048 1.6E-08 70.5 8.5 75 270-344 62-155 (356)
130 3vaa_A Shikimate kinase, SK; s 97.3 0.00016 5.3E-09 67.4 4.4 33 271-303 25-57 (199)
131 1v5w_A DMC1, meiotic recombina 97.3 0.00079 2.7E-08 68.5 9.9 77 269-345 120-234 (343)
132 2iut_A DNA translocase FTSK; n 97.3 0.0032 1.1E-07 68.0 14.5 74 332-422 345-420 (574)
133 3kb2_A SPBC2 prophage-derived 97.2 0.00022 7.4E-09 64.1 4.4 32 273-304 3-34 (173)
134 2zts_A Putative uncharacterize 97.2 0.0027 9.4E-08 60.3 12.4 96 269-367 28-169 (251)
135 4a74_A DNA repair and recombin 97.2 0.0016 5.4E-08 61.3 10.5 27 269-295 23-49 (231)
136 1via_A Shikimate kinase; struc 97.2 0.0002 6.8E-09 65.1 4.0 31 273-303 6-36 (175)
137 2r8r_A Sensor protein; KDPD, P 97.2 0.004 1.4E-07 59.3 13.1 32 272-303 7-41 (228)
138 2orw_A Thymidine kinase; TMTK, 97.2 0.00019 6.6E-09 66.3 3.9 30 273-302 5-37 (184)
139 2b8t_A Thymidine kinase; deoxy 97.2 0.00059 2E-08 65.1 7.4 71 271-342 12-101 (223)
140 1gvn_B Zeta; postsegregational 97.2 0.0015 5E-08 64.7 10.3 37 271-307 33-69 (287)
141 1zuh_A Shikimate kinase; alpha 97.2 0.00024 8.3E-09 64.0 4.2 32 272-303 8-39 (168)
142 3iij_A Coilin-interacting nucl 97.2 0.00023 7.9E-09 64.9 4.1 32 272-303 12-43 (180)
143 2iyv_A Shikimate kinase, SK; t 97.1 0.00024 8.1E-09 65.0 3.9 31 273-303 4-34 (184)
144 1vma_A Cell division protein F 97.1 0.0032 1.1E-07 62.9 12.4 71 270-340 103-196 (306)
145 1kag_A SKI, shikimate kinase I 97.1 0.00038 1.3E-08 62.8 4.7 30 272-301 5-34 (173)
146 3lda_A DNA repair protein RAD5 97.1 0.0013 4.5E-08 68.2 9.3 76 269-344 176-287 (400)
147 1y63_A LMAJ004144AAA protein; 97.1 0.00032 1.1E-08 64.5 3.9 32 272-303 11-43 (184)
148 2rhm_A Putative kinase; P-loop 97.1 0.00037 1.3E-08 63.9 4.3 32 272-303 6-37 (193)
149 2a5y_B CED-4; apoptosis; HET: 97.1 0.0071 2.4E-07 65.3 15.1 44 241-293 131-174 (549)
150 1pzn_A RAD51, DNA repair and r 97.1 0.0018 6E-08 66.1 9.7 27 269-295 129-155 (349)
151 2cdn_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 64.3 4.7 32 272-303 21-52 (201)
152 2ze6_A Isopentenyl transferase 97.0 0.0004 1.4E-08 67.5 4.6 33 273-305 3-35 (253)
153 2i1q_A DNA repair and recombin 97.0 0.0014 4.9E-08 65.7 8.8 26 269-294 96-121 (322)
154 1e6c_A Shikimate kinase; phosp 97.0 0.00037 1.3E-08 62.8 3.9 31 273-303 4-34 (173)
155 2ius_A DNA translocase FTSK; n 97.0 0.0071 2.4E-07 64.6 14.4 76 331-423 297-375 (512)
156 3e1s_A Exodeoxyribonuclease V, 97.0 0.0008 2.8E-08 73.2 7.0 34 272-305 205-241 (574)
157 1tev_A UMP-CMP kinase; ploop, 97.0 0.00046 1.6E-08 63.2 4.3 32 272-303 4-35 (196)
158 2p5t_B PEZT; postsegregational 97.0 0.0014 4.7E-08 63.5 7.8 37 271-307 32-68 (253)
159 3lw7_A Adenylate kinase relate 97.0 0.0004 1.4E-08 62.1 3.7 29 273-302 3-31 (179)
160 2c95_A Adenylate kinase 1; tra 97.0 0.00049 1.7E-08 63.2 4.3 32 272-303 10-41 (196)
161 1aky_A Adenylate kinase; ATP:A 97.0 0.0005 1.7E-08 64.9 4.4 31 272-302 5-35 (220)
162 3t61_A Gluconokinase; PSI-biol 97.0 0.0006 2.1E-08 63.3 4.8 32 272-303 19-50 (202)
163 3bh0_A DNAB-like replicative h 97.0 0.012 4E-07 58.9 14.6 35 269-303 66-103 (315)
164 3io5_A Recombination and repai 96.9 0.0019 6.6E-08 64.6 8.6 72 273-344 30-125 (333)
165 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0019 6.5E-08 62.8 8.4 37 272-308 5-44 (260)
166 2fz4_A DNA repair protein RAD2 96.9 0.002 6.9E-08 61.8 8.3 36 273-308 110-146 (237)
167 3cm0_A Adenylate kinase; ATP-b 96.9 0.00043 1.5E-08 63.2 3.4 31 272-302 5-35 (186)
168 1knq_A Gluconate kinase; ALFA/ 96.9 0.00072 2.5E-08 61.1 4.8 32 271-302 8-39 (175)
169 2pt5_A Shikimate kinase, SK; a 96.9 0.00056 1.9E-08 61.3 4.0 31 273-303 2-32 (168)
170 2bwj_A Adenylate kinase 5; pho 96.9 0.00057 2E-08 62.9 4.1 32 272-303 13-44 (199)
171 3dl0_A Adenylate kinase; phosp 96.9 0.00052 1.8E-08 64.4 3.7 31 273-303 2-32 (216)
172 3fb4_A Adenylate kinase; psych 96.9 0.00056 1.9E-08 64.2 3.9 31 273-303 2-32 (216)
173 3cmw_A Protein RECA, recombina 96.9 0.0026 8.8E-08 76.7 10.4 76 269-344 730-824 (1706)
174 2bbw_A Adenylate kinase 4, AK4 96.9 0.00076 2.6E-08 64.9 4.7 39 263-301 19-57 (246)
175 1qf9_A UMP/CMP kinase, protein 96.9 0.00064 2.2E-08 62.1 4.0 32 272-303 7-38 (194)
176 3crm_A TRNA delta(2)-isopenten 96.8 0.0021 7E-08 64.7 7.9 34 272-305 6-39 (323)
177 1kht_A Adenylate kinase; phosp 96.8 0.00058 2E-08 62.3 3.6 30 272-301 4-38 (192)
178 1nlf_A Regulatory protein REPA 96.8 0.0087 3E-07 58.5 12.2 26 270-295 29-54 (279)
179 4eun_A Thermoresistant glucoki 96.8 0.00098 3.4E-08 61.9 5.0 31 271-301 29-59 (200)
180 3tlx_A Adenylate kinase 2; str 96.8 0.00082 2.8E-08 64.8 4.6 34 270-303 28-61 (243)
181 1ak2_A Adenylate kinase isoenz 96.8 0.00082 2.8E-08 64.1 4.5 31 272-302 17-47 (233)
182 1zp6_A Hypothetical protein AT 96.8 0.0007 2.4E-08 62.0 3.9 37 271-307 9-45 (191)
183 1zd8_A GTP:AMP phosphotransfer 96.8 0.00067 2.3E-08 64.4 3.8 32 272-303 8-39 (227)
184 2pez_A Bifunctional 3'-phospho 96.8 0.0013 4.5E-08 59.7 5.7 37 271-307 5-44 (179)
185 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00049 1.7E-08 70.1 2.9 31 272-302 25-55 (359)
186 3be4_A Adenylate kinase; malar 96.8 0.00074 2.5E-08 63.7 3.8 31 272-302 6-36 (217)
187 1ukz_A Uridylate kinase; trans 96.8 0.0009 3.1E-08 62.0 4.4 32 272-303 16-47 (203)
188 4gp7_A Metallophosphoesterase; 96.8 0.0043 1.5E-07 56.2 8.8 19 272-290 10-28 (171)
189 1g5t_A COB(I)alamin adenosyltr 96.8 0.015 5.2E-07 54.0 12.6 112 273-406 30-174 (196)
190 2vli_A Antibiotic resistance p 96.7 0.00069 2.4E-08 61.5 3.3 29 272-300 6-34 (183)
191 1ly1_A Polynucleotide kinase; 96.7 0.00072 2.5E-08 61.0 3.3 30 272-301 3-33 (181)
192 3umf_A Adenylate kinase; rossm 96.7 0.0013 4.5E-08 62.4 4.9 36 271-308 29-64 (217)
193 3sr0_A Adenylate kinase; phosp 96.7 0.0012 4.1E-08 62.2 4.5 34 273-308 2-35 (206)
194 1cr0_A DNA primase/helicase; R 96.7 0.0098 3.3E-07 58.6 11.4 26 270-295 34-59 (296)
195 1zak_A Adenylate kinase; ATP:A 96.7 0.00066 2.3E-08 64.1 2.7 31 272-302 6-36 (222)
196 1e4v_A Adenylate kinase; trans 96.7 0.00094 3.2E-08 62.7 3.7 30 273-302 2-31 (214)
197 1q57_A DNA primase/helicase; d 96.7 0.011 3.9E-07 63.0 12.4 37 268-304 239-279 (503)
198 3jvv_A Twitching mobility prot 96.6 0.0015 5.1E-08 66.8 5.1 68 272-339 124-205 (356)
199 2pbr_A DTMP kinase, thymidylat 96.6 0.0016 5.6E-08 59.4 4.8 31 273-303 2-35 (195)
200 3uie_A Adenylyl-sulfate kinase 96.6 0.0022 7.5E-08 59.5 5.8 38 270-307 24-64 (200)
201 2gxq_A Heat resistant RNA depe 96.6 0.02 6.7E-07 52.7 12.3 23 272-294 39-62 (207)
202 1ex7_A Guanylate kinase; subst 96.6 0.0053 1.8E-07 56.8 8.0 28 272-299 2-29 (186)
203 1cke_A CK, MSSA, protein (cyti 96.6 0.0016 5.6E-08 61.3 4.5 30 273-302 7-36 (227)
204 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4.1E-08 61.2 3.5 30 273-303 3-32 (204)
205 2r6a_A DNAB helicase, replicat 96.5 0.022 7.5E-07 59.9 13.6 35 269-303 201-239 (454)
206 2jaq_A Deoxyguanosine kinase; 96.5 0.0016 5.5E-08 60.0 4.3 29 273-301 2-30 (205)
207 2eyu_A Twitching motility prot 96.5 0.0024 8.1E-08 62.4 5.7 70 270-339 24-107 (261)
208 2xb4_A Adenylate kinase; ATP-b 96.5 0.0018 6.2E-08 61.3 4.5 30 273-302 2-31 (223)
209 2yvu_A Probable adenylyl-sulfa 96.5 0.011 3.7E-07 53.9 9.7 37 271-307 13-52 (186)
210 1nks_A Adenylate kinase; therm 96.5 0.0012 4.1E-08 60.2 2.8 34 273-306 3-39 (194)
211 3nwj_A ATSK2; P loop, shikimat 96.4 0.0018 6.1E-08 62.9 4.0 32 272-303 49-80 (250)
212 2q6t_A DNAB replication FORK h 96.4 0.023 7.8E-07 59.6 12.8 36 269-304 198-237 (444)
213 2grj_A Dephospho-COA kinase; T 96.4 0.0018 6.3E-08 60.2 3.9 31 273-303 14-44 (192)
214 2z0h_A DTMP kinase, thymidylat 96.4 0.0025 8.6E-08 58.4 4.8 31 273-303 2-35 (197)
215 1m7g_A Adenylylsulfate kinase; 96.4 0.009 3.1E-07 55.8 8.7 37 271-307 25-65 (211)
216 3b6e_A Interferon-induced heli 96.4 0.013 4.3E-07 54.2 9.5 24 272-295 49-72 (216)
217 1jjv_A Dephospho-COA kinase; P 96.4 0.0016 5.5E-08 60.5 3.2 30 273-303 4-33 (206)
218 3ake_A Cytidylate kinase; CMP 96.4 0.0025 8.7E-08 58.9 4.5 31 273-303 4-34 (208)
219 2px0_A Flagellar biosynthesis 96.4 0.021 7.1E-07 56.7 11.4 60 244-304 79-142 (296)
220 2v54_A DTMP kinase, thymidylat 96.4 0.0023 8E-08 59.0 4.2 32 272-303 5-37 (204)
221 1t6n_A Probable ATP-dependent 96.3 0.083 2.8E-06 49.1 15.0 60 235-295 14-75 (220)
222 1qde_A EIF4A, translation init 96.3 0.05 1.7E-06 50.7 13.4 24 272-295 52-76 (224)
223 3r20_A Cytidylate kinase; stru 96.3 0.0033 1.1E-07 60.3 4.9 31 272-302 10-40 (233)
224 1vt4_I APAF-1 related killer D 96.2 0.031 1.1E-06 64.3 13.3 44 240-294 130-173 (1221)
225 3a8t_A Adenylate isopentenyltr 96.2 0.0021 7.3E-08 64.9 3.3 34 272-305 41-74 (339)
226 1uf9_A TT1252 protein; P-loop, 96.2 0.0026 9E-08 58.6 3.7 31 272-303 9-39 (203)
227 3zvl_A Bifunctional polynucleo 96.2 0.005 1.7E-07 64.2 6.2 32 271-302 258-289 (416)
228 4e22_A Cytidylate kinase; P-lo 96.2 0.0042 1.4E-07 60.0 5.3 31 271-301 27-57 (252)
229 2v6x_A Vacuolar protein sortin 96.1 0.076 2.6E-06 42.3 11.4 71 4-77 7-77 (85)
230 2xau_A PRE-mRNA-splicing facto 96.1 0.023 7.7E-07 64.0 11.2 59 235-294 72-132 (773)
231 2plr_A DTMP kinase, probable t 96.1 0.0039 1.3E-07 57.7 4.2 27 272-298 5-31 (213)
232 2wwf_A Thymidilate kinase, put 96.1 0.0017 5.6E-08 60.5 1.6 28 272-299 11-38 (212)
233 2ewv_A Twitching motility prot 96.0 0.0039 1.3E-07 64.0 4.4 70 270-339 135-218 (372)
234 3foz_A TRNA delta(2)-isopenten 96.0 0.0041 1.4E-07 62.1 4.3 34 272-305 11-44 (316)
235 1vht_A Dephospho-COA kinase; s 96.0 0.0036 1.2E-07 58.7 3.7 31 272-303 5-35 (218)
236 1vec_A ATP-dependent RNA helic 96.0 0.05 1.7E-06 50.0 11.6 18 272-289 41-58 (206)
237 1hv8_A Putative ATP-dependent 96.0 0.054 1.8E-06 54.0 12.6 70 235-304 6-82 (367)
238 3llm_A ATP-dependent RNA helic 96.0 0.038 1.3E-06 52.4 10.8 21 272-292 77-97 (235)
239 2qor_A Guanylate kinase; phosp 96.0 0.0059 2E-07 56.8 5.0 27 271-297 12-38 (204)
240 3bgw_A DNAB-like replicative h 96.0 0.039 1.3E-06 57.9 11.7 36 269-304 195-233 (444)
241 1nn5_A Similar to deoxythymidy 96.0 0.0022 7.7E-08 59.6 2.0 26 272-297 10-35 (215)
242 2h92_A Cytidylate kinase; ross 96.0 0.0043 1.5E-07 58.1 3.9 31 273-303 5-35 (219)
243 1q3t_A Cytidylate kinase; nucl 95.9 0.0066 2.2E-07 57.9 5.1 33 271-303 16-48 (236)
244 3d3q_A TRNA delta(2)-isopenten 95.9 0.0045 1.5E-07 62.7 3.9 34 272-305 8-41 (340)
245 3exa_A TRNA delta(2)-isopenten 95.9 0.0049 1.7E-07 61.7 4.0 33 273-305 5-37 (322)
246 1uj2_A Uridine-cytidine kinase 95.9 0.005 1.7E-07 59.4 4.0 27 272-298 23-49 (252)
247 2axn_A 6-phosphofructo-2-kinas 95.8 0.12 4.3E-06 55.2 15.0 36 272-307 36-74 (520)
248 1w36_D RECD, exodeoxyribonucle 95.8 0.034 1.2E-06 60.7 10.7 24 272-295 165-188 (608)
249 3bor_A Human initiation factor 95.8 0.061 2.1E-06 50.9 11.3 18 272-289 68-85 (237)
250 1x6v_B Bifunctional 3'-phospho 95.8 0.026 8.9E-07 61.7 9.6 36 272-307 53-91 (630)
251 2bdt_A BH3686; alpha-beta prot 95.8 0.0063 2.1E-07 55.6 4.0 25 273-297 4-28 (189)
252 2qt1_A Nicotinamide riboside k 95.8 0.0043 1.5E-07 57.7 2.9 32 272-303 22-54 (207)
253 1kgd_A CASK, peripheral plasma 95.7 0.0064 2.2E-07 55.4 4.0 25 272-296 6-30 (180)
254 1g41_A Heat shock protein HSLU 95.7 0.00056 1.9E-08 71.8 -3.6 60 352-421 125-188 (444)
255 2f6r_A COA synthase, bifunctio 95.7 0.0052 1.8E-07 60.5 3.5 31 272-303 76-106 (281)
256 2pl3_A Probable ATP-dependent 95.7 0.069 2.4E-06 50.3 11.4 54 235-289 25-80 (236)
257 2oxc_A Probable ATP-dependent 95.7 0.08 2.7E-06 49.8 11.8 17 272-288 62-78 (230)
258 1ltq_A Polynucleotide kinase; 95.7 0.0044 1.5E-07 61.1 3.0 32 272-303 3-35 (301)
259 1zu4_A FTSY; GTPase, signal re 95.7 0.051 1.7E-06 54.5 10.8 35 269-303 103-140 (320)
260 3e70_C DPA, signal recognition 95.7 0.041 1.4E-06 55.4 10.0 27 269-295 127-153 (328)
261 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0025 8.6E-08 64.4 0.9 69 272-340 172-250 (330)
262 3thx_B DNA mismatch repair pro 95.6 0.047 1.6E-06 62.3 11.4 23 272-294 674-696 (918)
263 3iuy_A Probable ATP-dependent 95.6 0.038 1.3E-06 51.8 8.8 18 272-289 58-75 (228)
264 2qmh_A HPR kinase/phosphorylas 95.5 0.0065 2.2E-07 56.7 3.2 35 271-306 34-68 (205)
265 3asz_A Uridine kinase; cytidin 95.5 0.0078 2.7E-07 55.9 3.8 30 272-301 7-38 (211)
266 1p9r_A General secretion pathw 95.5 0.028 9.7E-07 58.5 8.4 92 235-339 144-245 (418)
267 3eph_A TRNA isopentenyltransfe 95.5 0.009 3.1E-07 61.8 4.2 33 272-304 3-35 (409)
268 3tau_A Guanylate kinase, GMP k 95.5 0.0083 2.8E-07 56.1 3.7 28 270-297 7-34 (208)
269 2j37_W Signal recognition part 95.4 0.038 1.3E-06 58.9 9.1 35 270-304 100-137 (504)
270 3fdi_A Uncharacterized protein 95.4 0.0096 3.3E-07 55.6 4.1 29 273-301 8-36 (201)
271 2j41_A Guanylate kinase; GMP, 95.4 0.0075 2.6E-07 55.6 3.3 24 272-295 7-30 (207)
272 1q0u_A Bstdead; DEAD protein, 95.4 0.057 2E-06 50.3 9.5 19 272-290 42-60 (219)
273 4a1f_A DNAB helicase, replicat 95.4 0.081 2.8E-06 53.4 11.1 35 269-303 44-81 (338)
274 1tf7_A KAIC; homohexamer, hexa 95.4 0.094 3.2E-06 56.1 12.3 22 270-291 38-59 (525)
275 3tr0_A Guanylate kinase, GMP k 95.4 0.01 3.5E-07 54.7 4.0 25 272-296 8-32 (205)
276 3c8u_A Fructokinase; YP_612366 95.4 0.0087 3E-07 55.8 3.5 27 270-296 21-47 (208)
277 1tf7_A KAIC; homohexamer, hexa 95.3 0.097 3.3E-06 56.0 11.9 74 270-343 280-384 (525)
278 3fe2_A Probable ATP-dependent 95.3 0.059 2E-06 51.1 9.2 18 272-289 67-84 (242)
279 3thx_A DNA mismatch repair pro 95.2 0.099 3.4E-06 59.8 12.1 21 273-293 664-684 (934)
280 1rz3_A Hypothetical protein rb 95.2 0.022 7.7E-07 52.7 5.7 34 272-305 23-59 (201)
281 3dkp_A Probable ATP-dependent 95.2 0.16 5.3E-06 48.1 11.8 17 272-288 67-83 (245)
282 3a00_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 54.1 3.4 24 273-296 3-26 (186)
283 2v6y_A AAA family ATPase, P60 95.2 0.077 2.6E-06 42.1 7.9 65 6-73 7-71 (83)
284 1lvg_A Guanylate kinase, GMP k 95.1 0.012 3.9E-07 54.7 3.6 25 272-296 5-29 (198)
285 1j8m_F SRP54, signal recogniti 95.1 0.077 2.6E-06 52.6 9.7 69 271-339 98-189 (297)
286 2cpt_A SKD1 protein, vacuolar 95.1 0.16 5.4E-06 43.1 10.1 71 6-79 14-85 (117)
287 4a5x_A MITD1, MIT domain-conta 95.1 0.18 6.1E-06 40.3 9.9 68 9-79 15-82 (86)
288 4b3f_X DNA-binding protein smu 95.0 0.1 3.5E-06 57.3 11.3 34 273-306 207-243 (646)
289 2yhs_A FTSY, cell division pro 95.0 0.079 2.7E-06 56.1 9.9 26 270-295 292-317 (503)
290 1xti_A Probable ATP-dependent 95.0 0.26 9.1E-06 49.5 13.7 23 272-294 46-68 (391)
291 1wfd_A Hypothetical protein 15 95.0 0.19 6.5E-06 40.7 10.0 70 7-79 12-81 (93)
292 1rj9_A FTSY, signal recognitio 95.0 0.034 1.2E-06 55.4 6.7 26 270-295 101-126 (304)
293 3b9q_A Chloroplast SRP recepto 95.0 0.035 1.2E-06 55.2 6.7 26 270-295 99-124 (302)
294 1xx6_A Thymidine kinase; NESG, 94.9 0.036 1.2E-06 51.3 6.1 32 272-303 9-43 (191)
295 3pey_A ATP-dependent RNA helic 94.8 0.32 1.1E-05 48.8 13.8 21 272-292 45-65 (395)
296 3ney_A 55 kDa erythrocyte memb 94.8 0.022 7.5E-07 53.1 4.5 26 271-296 19-44 (197)
297 3ber_A Probable ATP-dependent 94.8 0.23 8E-06 47.4 12.1 18 272-289 81-98 (249)
298 1ls1_A Signal recognition part 94.8 0.077 2.6E-06 52.4 8.7 70 270-339 97-189 (295)
299 3eiq_A Eukaryotic initiation f 94.8 0.6 2E-05 47.3 15.8 19 272-290 78-96 (414)
300 1htw_A HI0065; nucleotide-bind 94.8 0.02 6.8E-07 51.3 4.0 24 272-295 34-57 (158)
301 3hdt_A Putative kinase; struct 94.8 0.017 5.6E-07 55.0 3.6 29 273-301 16-44 (223)
302 1gtv_A TMK, thymidylate kinase 94.8 0.008 2.7E-07 55.8 1.3 25 273-297 2-26 (214)
303 2w2u_A Hypothetical P60 katani 94.8 0.15 5E-06 40.5 8.5 66 5-73 14-79 (83)
304 1znw_A Guanylate kinase, GMP k 94.7 0.019 6.4E-07 53.4 3.8 25 272-296 21-45 (207)
305 3gmt_A Adenylate kinase; ssgci 94.7 0.023 7.8E-07 54.3 4.3 30 273-302 10-39 (230)
306 2z0m_A 337AA long hypothetical 94.7 0.2 6.8E-06 49.2 11.4 34 272-305 32-65 (337)
307 2oap_1 GSPE-2, type II secreti 94.6 0.012 4.3E-07 62.8 2.6 68 272-339 261-342 (511)
308 1wb9_A DNA mismatch repair pro 94.6 0.18 6.3E-06 56.7 12.2 23 272-294 608-630 (800)
309 1s2m_A Putative ATP-dependent 94.6 0.16 5.3E-06 51.6 10.7 21 272-292 59-79 (400)
310 2og2_A Putative signal recogni 94.6 0.047 1.6E-06 55.7 6.6 26 270-295 156-181 (359)
311 4eaq_A DTMP kinase, thymidylat 94.6 0.026 9E-07 53.6 4.5 31 271-301 26-58 (229)
312 2j0s_A ATP-dependent RNA helic 94.5 0.25 8.4E-06 50.3 12.0 21 272-292 75-95 (410)
313 1z6g_A Guanylate kinase; struc 94.5 0.021 7.3E-07 53.7 3.7 24 272-295 24-47 (218)
314 2xxa_A Signal recognition part 94.5 0.092 3.1E-06 54.9 8.7 70 270-339 99-192 (433)
315 2jeo_A Uridine-cytidine kinase 94.4 0.023 8E-07 54.3 3.6 26 273-298 27-52 (245)
316 1s96_A Guanylate kinase, GMP k 94.4 0.026 9.1E-07 53.3 3.9 26 271-296 16-41 (219)
317 2va8_A SSO2462, SKI2-type heli 94.3 0.19 6.3E-06 55.8 11.4 71 234-304 7-83 (715)
318 2ffh_A Protein (FFH); SRP54, s 94.3 0.19 6.4E-06 52.4 10.6 34 270-303 97-133 (425)
319 1a7j_A Phosphoribulokinase; tr 94.3 0.011 3.8E-07 58.5 1.2 34 273-306 7-43 (290)
320 3p32_A Probable GTPase RV1496/ 94.3 0.089 3E-06 53.4 7.9 24 272-295 80-103 (355)
321 2i3b_A HCR-ntpase, human cance 94.3 0.026 8.9E-07 52.1 3.5 23 273-295 3-25 (189)
322 3fmo_B ATP-dependent RNA helic 94.3 0.29 9.9E-06 48.2 11.5 55 234-288 91-148 (300)
323 1sky_E F1-ATPase, F1-ATP synth 94.2 0.027 9.4E-07 59.3 4.0 24 272-295 152-175 (473)
324 3lnc_A Guanylate kinase, GMP k 94.2 0.025 8.7E-07 53.4 3.4 25 272-296 28-53 (231)
325 3fht_A ATP-dependent RNA helic 94.2 0.34 1.1E-05 49.1 12.1 18 272-289 65-82 (412)
326 1wp9_A ATP-dependent RNA helic 94.2 0.26 8.9E-06 50.6 11.4 36 273-308 25-65 (494)
327 1w4r_A Thymidine kinase; type 94.1 0.037 1.3E-06 51.4 4.2 34 272-305 21-57 (195)
328 3ice_A Transcription terminati 94.1 0.13 4.5E-06 52.8 8.5 24 272-295 175-198 (422)
329 1m8p_A Sulfate adenylyltransfe 94.0 0.043 1.5E-06 59.5 5.2 37 272-308 397-437 (573)
330 2v9p_A Replication protein E1; 94.0 0.033 1.1E-06 55.5 4.0 30 270-299 125-154 (305)
331 1ewq_A DNA mismatch repair pro 94.0 0.2 6.7E-06 56.2 10.6 24 272-295 577-600 (765)
332 3vkw_A Replicase large subunit 94.0 0.074 2.5E-06 55.6 6.7 23 272-294 162-184 (446)
333 1c9k_A COBU, adenosylcobinamid 94.0 0.027 9.4E-07 51.6 3.1 32 274-306 2-33 (180)
334 1sq5_A Pantothenate kinase; P- 94.0 0.031 1.1E-06 55.6 3.7 25 272-296 81-105 (308)
335 3tqf_A HPR(Ser) kinase; transf 94.0 0.043 1.5E-06 50.0 4.3 31 270-301 15-45 (181)
336 1fuu_A Yeast initiation factor 93.9 0.31 1.1E-05 49.0 11.3 18 272-289 59-76 (394)
337 2c9o_A RUVB-like 1; hexameric 93.9 0.00074 2.5E-08 71.3 -8.8 84 359-457 173-262 (456)
338 1bif_A 6-phosphofructo-2-kinas 93.9 0.15 5.2E-06 53.7 9.1 25 272-296 40-64 (469)
339 2i4i_A ATP-dependent RNA helic 93.8 0.38 1.3E-05 48.9 11.7 16 272-287 53-68 (417)
340 3fmp_B ATP-dependent RNA helic 93.8 0.47 1.6E-05 49.6 12.7 18 271-288 131-148 (479)
341 2qm8_A GTPase/ATPase; G protei 93.8 0.17 5.9E-06 50.9 8.8 24 272-295 56-79 (337)
342 4i1u_A Dephospho-COA kinase; s 93.8 0.041 1.4E-06 51.7 3.9 31 273-304 11-41 (210)
343 1odf_A YGR205W, hypothetical 3 93.8 0.085 2.9E-06 52.1 6.4 27 271-297 31-57 (290)
344 3ly5_A ATP-dependent RNA helic 93.7 0.36 1.2E-05 46.4 10.8 19 272-290 92-110 (262)
345 1wrb_A DJVLGB; RNA helicase, D 93.7 0.32 1.1E-05 46.1 10.4 18 272-289 61-78 (253)
346 2p6r_A Afuhel308 helicase; pro 93.6 0.11 3.6E-06 57.7 7.5 34 271-304 40-76 (702)
347 3kta_A Chromosome segregation 93.6 0.04 1.4E-06 49.7 3.4 25 273-297 28-52 (182)
348 2fwr_A DNA repair protein RAD2 93.6 0.081 2.8E-06 55.4 6.2 36 273-308 110-146 (472)
349 2j9r_A Thymidine kinase; TK1, 93.5 0.08 2.7E-06 49.8 5.4 31 273-303 30-63 (214)
350 3aez_A Pantothenate kinase; tr 93.5 0.048 1.6E-06 54.5 4.1 27 270-296 89-115 (312)
351 3tqc_A Pantothenate kinase; bi 93.5 0.046 1.6E-06 54.9 3.9 25 272-296 93-117 (321)
352 2ocp_A DGK, deoxyguanosine kin 93.5 0.052 1.8E-06 51.6 4.1 28 272-299 3-31 (241)
353 2o8b_B DNA mismatch repair pro 93.4 0.42 1.4E-05 55.2 12.3 21 272-292 790-810 (1022)
354 2zj8_A DNA helicase, putative 93.3 0.34 1.2E-05 53.8 10.9 34 271-304 39-76 (720)
355 2ged_A SR-beta, signal recogni 93.2 0.1 3.4E-06 47.1 5.5 24 272-295 49-72 (193)
356 3l9o_A ATP-dependent RNA helic 93.2 0.19 6.6E-06 58.7 9.1 34 272-305 200-236 (1108)
357 1xjc_A MOBB protein homolog; s 93.2 0.055 1.9E-06 49.1 3.5 24 272-295 5-28 (169)
358 4a2p_A RIG-I, retinoic acid in 93.1 0.49 1.7E-05 50.1 11.5 34 272-305 23-64 (556)
359 3tif_A Uncharacterized ABC tra 93.1 0.047 1.6E-06 52.1 3.1 27 270-296 30-56 (235)
360 1np6_A Molybdopterin-guanine d 93.0 0.058 2E-06 49.1 3.5 24 272-295 7-30 (174)
361 3tbk_A RIG-I helicase domain; 93.0 0.77 2.6E-05 48.4 13.0 34 272-305 20-61 (555)
362 2db3_A ATP-dependent RNA helic 93.0 0.62 2.1E-05 48.2 11.9 16 272-287 94-109 (434)
363 3b85_A Phosphate starvation-in 93.0 0.043 1.5E-06 51.4 2.6 22 273-294 24-45 (208)
364 3lv8_A DTMP kinase, thymidylat 92.9 0.062 2.1E-06 51.4 3.7 25 271-295 27-51 (236)
365 2onk_A Molybdate/tungstate ABC 92.9 0.051 1.7E-06 52.1 3.1 24 272-295 25-48 (240)
366 2pcj_A ABC transporter, lipopr 92.9 0.047 1.6E-06 51.7 2.8 25 272-296 31-55 (224)
367 1g8f_A Sulfate adenylyltransfe 92.9 0.059 2E-06 57.5 3.9 26 272-297 396-421 (511)
368 2cbz_A Multidrug resistance-as 92.9 0.052 1.8E-06 51.9 3.1 26 270-295 30-55 (237)
369 1p5z_B DCK, deoxycytidine kina 92.8 0.028 9.7E-07 54.3 1.2 29 272-300 25-54 (263)
370 3sop_A Neuronal-specific septi 92.8 0.058 2E-06 52.7 3.4 23 273-295 4-26 (270)
371 2f9l_A RAB11B, member RAS onco 92.7 0.061 2.1E-06 49.2 3.2 22 273-294 7-28 (199)
372 3i5x_A ATP-dependent RNA helic 92.7 0.93 3.2E-05 48.3 13.1 17 271-287 111-127 (563)
373 1oix_A RAS-related protein RAB 92.7 0.059 2E-06 49.1 3.1 23 273-295 31-53 (191)
374 3cr8_A Sulfate adenylyltranfer 92.6 0.058 2E-06 58.2 3.4 37 271-307 369-409 (552)
375 1b0u_A Histidine permease; ABC 92.6 0.06 2E-06 52.3 3.2 25 272-296 33-57 (262)
376 3sqw_A ATP-dependent RNA helic 92.6 0.81 2.8E-05 49.2 12.5 17 271-287 60-76 (579)
377 2dyk_A GTP-binding protein; GT 92.6 0.074 2.5E-06 46.2 3.5 22 273-294 3-24 (161)
378 1mv5_A LMRA, multidrug resista 92.5 0.062 2.1E-06 51.5 3.2 26 270-295 27-52 (243)
379 1lw7_A Transcriptional regulat 92.5 0.068 2.3E-06 54.3 3.6 28 272-299 171-198 (365)
380 1sgw_A Putative ABC transporte 92.5 0.054 1.8E-06 51.0 2.6 25 272-296 36-60 (214)
381 2zu0_C Probable ATP-dependent 92.4 0.077 2.6E-06 51.7 3.7 24 271-294 46-69 (267)
382 2v6i_A RNA helicase; membrane, 92.4 0.3 1E-05 50.8 8.4 33 272-304 3-39 (431)
383 2f1r_A Molybdopterin-guanine d 92.4 0.046 1.6E-06 49.6 1.9 24 273-296 4-27 (171)
384 2v3c_C SRP54, signal recogniti 92.3 0.16 5.5E-06 53.0 6.2 34 271-304 99-135 (432)
385 1g6h_A High-affinity branched- 92.3 0.065 2.2E-06 51.8 3.0 24 272-295 34-57 (257)
386 2d2e_A SUFC protein; ABC-ATPas 92.3 0.078 2.7E-06 51.0 3.5 23 272-294 30-52 (250)
387 2pze_A Cystic fibrosis transme 92.2 0.069 2.4E-06 50.7 3.1 25 271-295 34-58 (229)
388 2ghi_A Transport protein; mult 92.2 0.07 2.4E-06 51.7 3.1 26 270-295 45-70 (260)
389 4edh_A DTMP kinase, thymidylat 92.2 0.081 2.8E-06 49.7 3.5 25 272-296 7-31 (213)
390 2gk6_A Regulator of nonsense t 92.2 0.13 4.5E-06 56.2 5.6 23 273-295 197-219 (624)
391 3fvq_A Fe(3+) IONS import ATP- 92.2 0.076 2.6E-06 54.1 3.4 24 272-295 31-54 (359)
392 2ixe_A Antigen peptide transpo 92.2 0.071 2.4E-06 52.0 3.1 25 271-295 45-69 (271)
393 2olj_A Amino acid ABC transpor 92.2 0.073 2.5E-06 51.8 3.2 25 272-296 51-75 (263)
394 1ji0_A ABC transporter; ATP bi 92.1 0.071 2.4E-06 51.0 3.0 25 272-296 33-57 (240)
395 2ff7_A Alpha-hemolysin translo 92.1 0.071 2.4E-06 51.3 3.0 25 271-295 35-59 (247)
396 3gfo_A Cobalt import ATP-bindi 92.1 0.072 2.4E-06 52.2 3.1 24 272-295 35-58 (275)
397 3tmk_A Thymidylate kinase; pho 92.1 0.12 4E-06 48.8 4.4 27 272-298 6-32 (216)
398 2qi9_C Vitamin B12 import ATP- 92.0 0.076 2.6E-06 51.2 3.1 25 272-296 27-51 (249)
399 4g1u_C Hemin import ATP-bindin 92.0 0.076 2.6E-06 51.7 3.1 24 272-295 38-61 (266)
400 1vpl_A ABC transporter, ATP-bi 92.0 0.079 2.7E-06 51.3 3.2 25 271-295 41-65 (256)
401 1z2a_A RAS-related protein RAB 92.0 0.093 3.2E-06 45.8 3.4 22 273-294 7-28 (168)
402 1z47_A CYSA, putative ABC-tran 92.0 0.074 2.5E-06 54.1 3.1 24 272-295 42-65 (355)
403 2yz2_A Putative ABC transporte 91.9 0.079 2.7E-06 51.5 3.1 26 270-295 32-57 (266)
404 2p67_A LAO/AO transport system 91.9 0.4 1.4E-05 48.2 8.4 25 271-295 56-80 (341)
405 2gza_A Type IV secretion syste 91.9 0.063 2.1E-06 54.7 2.5 70 271-340 175-262 (361)
406 1nrj_B SR-beta, signal recogni 91.9 0.11 3.7E-06 48.0 3.8 24 272-295 13-36 (218)
407 1kao_A RAP2A; GTP-binding prot 91.8 0.1 3.5E-06 45.3 3.5 23 273-295 5-27 (167)
408 2it1_A 362AA long hypothetical 91.8 0.095 3.3E-06 53.4 3.7 24 272-295 30-53 (362)
409 3v9p_A DTMP kinase, thymidylat 91.8 0.076 2.6E-06 50.5 2.8 24 272-295 26-49 (227)
410 3rlf_A Maltose/maltodextrin im 91.8 0.097 3.3E-06 53.7 3.7 24 272-295 30-53 (381)
411 2yyz_A Sugar ABC transporter, 91.8 0.096 3.3E-06 53.3 3.6 24 272-295 30-53 (359)
412 2ihy_A ABC transporter, ATP-bi 91.8 0.082 2.8E-06 51.9 3.1 25 272-296 48-72 (279)
413 2zej_A Dardarin, leucine-rich 91.8 0.075 2.6E-06 47.9 2.6 21 273-293 4-24 (184)
414 2ce2_X GTPase HRAS; signaling 91.7 0.097 3.3E-06 45.3 3.2 23 273-295 5-27 (166)
415 1v43_A Sugar-binding transport 91.7 0.1 3.4E-06 53.5 3.7 24 272-295 38-61 (372)
416 2www_A Methylmalonic aciduria 91.7 0.3 1E-05 49.4 7.2 25 271-295 74-98 (349)
417 1g29_1 MALK, maltose transport 91.7 0.084 2.9E-06 54.1 3.1 24 272-295 30-53 (372)
418 2wji_A Ferrous iron transport 91.7 0.094 3.2E-06 46.3 3.1 21 273-293 5-25 (165)
419 1ek0_A Protein (GTP-binding pr 91.7 0.11 3.6E-06 45.4 3.4 23 273-295 5-27 (170)
420 1u8z_A RAS-related protein RAL 91.6 0.11 3.7E-06 45.2 3.4 23 272-294 5-27 (168)
421 2nq2_C Hypothetical ABC transp 91.6 0.087 3E-06 50.9 3.0 24 272-295 32-55 (253)
422 4f4c_A Multidrug resistance pr 91.6 0.25 8.5E-06 58.9 7.4 28 269-296 442-469 (1321)
423 3d31_A Sulfate/molybdate ABC t 91.5 0.083 2.8E-06 53.6 2.8 24 272-295 27-50 (348)
424 1wms_A RAB-9, RAB9, RAS-relate 91.5 0.11 3.9E-06 45.8 3.5 23 272-294 8-30 (177)
425 1z0j_A RAB-22, RAS-related pro 91.5 0.12 3.9E-06 45.3 3.5 23 273-295 8-30 (170)
426 2nzj_A GTP-binding protein REM 91.5 0.1 3.5E-06 45.9 3.1 22 273-294 6-27 (175)
427 2gks_A Bifunctional SAT/APS ki 91.4 0.19 6.3E-06 54.2 5.6 36 272-307 373-411 (546)
428 3oiy_A Reverse gyrase helicase 91.4 0.98 3.4E-05 46.0 11.0 20 272-291 37-56 (414)
429 1z08_A RAS-related protein RAB 91.4 0.12 4.1E-06 45.2 3.5 23 272-294 7-29 (170)
430 1ky3_A GTP-binding protein YPT 91.4 0.12 4.1E-06 45.7 3.5 23 272-294 9-31 (182)
431 3h1t_A Type I site-specific re 91.3 0.26 8.8E-06 53.3 6.7 24 272-295 199-222 (590)
432 2pjz_A Hypothetical protein ST 91.3 0.087 3E-06 51.2 2.6 25 271-295 30-54 (263)
433 1g16_A RAS-related protein SEC 91.2 0.12 4E-06 45.2 3.2 22 273-294 5-26 (170)
434 3fho_A ATP-dependent RNA helic 91.2 0.94 3.2E-05 47.9 10.8 23 272-294 159-182 (508)
435 2lkc_A Translation initiation 91.2 0.15 5.3E-06 44.9 4.0 23 271-293 8-30 (178)
436 1r2q_A RAS-related protein RAB 91.1 0.13 4.4E-06 44.8 3.4 23 272-294 7-29 (170)
437 1c1y_A RAS-related protein RAP 91.1 0.13 4.4E-06 44.8 3.4 22 273-294 5-26 (167)
438 4ag6_A VIRB4 ATPase, type IV s 91.1 0.19 6.6E-06 51.4 5.2 34 271-304 35-71 (392)
439 3bc1_A RAS-related protein RAB 91.1 0.13 4.4E-06 46.0 3.4 23 272-294 12-34 (195)
440 2orv_A Thymidine kinase; TP4A 91.1 0.64 2.2E-05 44.2 8.3 32 272-303 20-54 (234)
441 1f2t_A RAD50 ABC-ATPase; DNA d 91.1 0.12 4.1E-06 45.5 3.1 23 273-295 25-47 (149)
442 2gj8_A MNME, tRNA modification 91.1 0.12 4.1E-06 46.1 3.1 23 272-294 5-27 (172)
443 1r8s_A ADP-ribosylation factor 91.0 0.13 4.6E-06 44.7 3.4 23 273-295 2-24 (164)
444 2erx_A GTP-binding protein DI- 91.0 0.13 4.5E-06 44.9 3.3 22 273-294 5-26 (172)
445 3q85_A GTP-binding protein REM 91.0 0.12 4.2E-06 45.2 3.1 20 273-292 4-23 (169)
446 2wjg_A FEOB, ferrous iron tran 90.9 0.12 4.1E-06 46.3 3.1 23 272-294 8-30 (188)
447 3gd7_A Fusion complex of cysti 90.9 0.12 4.2E-06 53.2 3.4 25 271-295 47-71 (390)
448 3ld9_A DTMP kinase, thymidylat 90.9 0.16 5.6E-06 48.1 4.1 26 272-297 22-47 (223)
449 2wjy_A Regulator of nonsense t 90.9 0.21 7.3E-06 56.2 5.6 23 273-295 373-395 (800)
450 2hxs_A RAB-26, RAS-related pro 90.9 0.14 4.7E-06 45.3 3.3 23 272-294 7-29 (178)
451 1z0f_A RAB14, member RAS oncog 90.8 0.14 4.9E-06 45.0 3.4 24 272-295 16-39 (179)
452 2xgj_A ATP-dependent RNA helic 90.8 0.82 2.8E-05 52.8 10.5 34 272-305 102-138 (1010)
453 1oxx_K GLCV, glucose, ABC tran 90.7 0.088 3E-06 53.5 2.1 24 272-295 32-55 (353)
454 2wsm_A Hydrogenase expression/ 90.7 0.15 5E-06 47.3 3.5 25 272-296 31-55 (221)
455 4tmk_A Protein (thymidylate ki 90.7 0.14 4.7E-06 48.1 3.3 24 272-295 4-27 (213)
456 2fn4_A P23, RAS-related protei 90.7 0.14 4.8E-06 45.2 3.2 23 272-294 10-32 (181)
457 1upt_A ARL1, ADP-ribosylation 90.7 0.17 5.9E-06 44.2 3.8 23 272-294 8-30 (171)
458 2y8e_A RAB-protein 6, GH09086P 90.7 0.13 4.5E-06 45.3 3.0 23 272-294 15-37 (179)
459 2bbs_A Cystic fibrosis transme 90.7 0.12 4E-06 51.1 2.9 26 270-295 63-88 (290)
460 2obl_A ESCN; ATPase, hydrolase 90.6 0.18 6.3E-06 51.0 4.4 27 272-298 72-98 (347)
461 3con_A GTPase NRAS; structural 90.6 0.15 5.2E-06 45.8 3.4 24 272-295 22-45 (190)
462 2oil_A CATX-8, RAS-related pro 90.6 0.15 5.1E-06 46.0 3.4 23 273-295 27-49 (193)
463 4dsu_A GTPase KRAS, isoform 2B 90.6 0.16 5.3E-06 45.3 3.5 23 273-295 6-28 (189)
464 2a9k_A RAS-related protein RAL 90.6 0.15 5.2E-06 45.2 3.4 23 272-294 19-41 (187)
465 1nij_A Hypothetical protein YJ 90.6 0.19 6.5E-06 50.1 4.4 23 273-295 6-28 (318)
466 3clv_A RAB5 protein, putative; 90.6 0.15 5E-06 45.9 3.3 23 272-294 8-30 (208)
467 3q72_A GTP-binding protein RAD 90.5 0.12 4.2E-06 45.0 2.7 20 273-292 4-23 (166)
468 2efe_B Small GTP-binding prote 90.5 0.16 5.5E-06 44.9 3.5 23 272-294 13-35 (181)
469 1m7b_A RND3/RHOE small GTP-bin 90.4 0.14 4.8E-06 45.9 3.0 23 272-294 8-30 (184)
470 3tkl_A RAS-related protein RAB 90.4 0.15 5.1E-06 45.9 3.2 24 272-295 17-40 (196)
471 2g6b_A RAS-related protein RAB 90.3 0.17 5.8E-06 44.7 3.4 24 272-295 11-34 (180)
472 3kkq_A RAS-related protein M-R 90.2 0.17 5.9E-06 45.0 3.4 23 272-294 19-41 (183)
473 2bme_A RAB4A, RAS-related prot 90.2 0.15 5.1E-06 45.5 3.0 24 272-295 11-34 (186)
474 3tw8_B RAS-related protein RAB 90.2 0.16 5.4E-06 44.9 3.1 22 272-293 10-31 (181)
475 2npi_A Protein CLP1; CLP1-PCF1 90.2 0.15 5.2E-06 53.6 3.4 25 271-295 138-162 (460)
476 1mh1_A RAC1; GTP-binding, GTPa 90.1 0.18 6E-06 44.8 3.4 22 273-294 7-28 (186)
477 1yrb_A ATP(GTP)binding protein 90.1 0.32 1.1E-05 46.3 5.4 32 272-303 15-48 (262)
478 2dpy_A FLII, flagellum-specifi 90.1 0.21 7.2E-06 52.2 4.4 27 272-298 158-184 (438)
479 4a2q_A RIG-I, retinoic acid in 90.1 1.8 6.1E-05 48.5 12.4 33 272-304 264-304 (797)
480 1ko7_A HPR kinase/phosphatase; 90.1 0.2 6.8E-06 49.9 4.0 30 270-300 143-172 (314)
481 2vp4_A Deoxynucleoside kinase; 90.0 0.15 5E-06 48.2 2.9 29 271-300 20-48 (230)
482 3ihw_A Centg3; RAS, centaurin, 90.0 0.17 5.9E-06 45.6 3.3 22 273-294 22-43 (184)
483 2ykg_A Probable ATP-dependent 90.0 2.2 7.4E-05 46.7 12.8 22 272-293 29-50 (696)
484 3c5c_A RAS-like protein 12; GD 90.0 0.17 6E-06 45.6 3.3 22 273-294 23-44 (187)
485 2gf9_A RAS-related protein RAB 90.0 0.18 6.3E-06 45.3 3.4 23 273-295 24-46 (189)
486 3nh6_A ATP-binding cassette SU 90.0 0.12 4E-06 51.5 2.3 26 270-295 79-104 (306)
487 4hlc_A DTMP kinase, thymidylat 89.9 0.28 9.5E-06 45.7 4.7 29 273-301 4-34 (205)
488 3t1o_A Gliding protein MGLA; G 89.9 0.18 6.1E-06 45.2 3.2 24 272-295 15-38 (198)
489 3bwd_D RAC-like GTP-binding pr 89.9 0.19 6.5E-06 44.5 3.4 23 272-294 9-31 (182)
490 1dek_A Deoxynucleoside monopho 89.9 0.13 4.4E-06 49.3 2.4 28 273-300 3-30 (241)
491 2hf9_A Probable hydrogenase ni 89.8 0.18 6E-06 46.9 3.3 24 272-295 39-62 (226)
492 3tui_C Methionine import ATP-b 89.8 0.19 6.5E-06 51.2 3.7 24 272-295 55-78 (366)
493 1m2o_B GTP-binding protein SAR 89.8 0.17 5.8E-06 45.8 3.0 22 272-293 24-45 (190)
494 2atv_A RERG, RAS-like estrogen 89.7 0.2 6.8E-06 45.4 3.5 23 272-294 29-51 (196)
495 2bov_A RAla, RAS-related prote 89.7 0.2 6.7E-06 45.5 3.4 23 272-294 15-37 (206)
496 1z06_A RAS-related protein RAB 89.7 0.2 6.9E-06 45.0 3.5 23 272-294 21-43 (189)
497 3dz8_A RAS-related protein RAB 89.7 0.18 6.3E-06 45.4 3.2 23 273-295 25-47 (191)
498 2cxx_A Probable GTP-binding pr 89.7 0.16 5.6E-06 45.3 2.8 22 273-294 3-24 (190)
499 2fg5_A RAB-22B, RAS-related pr 89.7 0.19 6.5E-06 45.4 3.2 23 273-295 25-47 (192)
500 1zd9_A ADP-ribosylation factor 89.7 0.2 6.9E-06 45.1 3.4 23 272-294 23-45 (188)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-49 Score=412.24 Aligned_cols=253 Identities=38% Similarity=0.621 Sum_probs=233.2
Q ss_pred HhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 224 LERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 224 ~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
+....+.+.|+++|+||+|++++|+.|++++.+|+.+|++|...+ .+++|||||||||||||+||+++|++++.+|+.+
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 345667888999999999999999999999999999999999754 6779999999999999999999999999999999
Q ss_pred ehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcCCCCCCCCCCc
Q 009911 303 SSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVNNTGTNEDGSR 380 (522)
Q Consensus 303 ~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 380 (522)
+++++.++|.|++++.++.+|..|+.++||||||||||.++.++.... .+....+++..||..||++.....
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~------ 287 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN------ 287 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC------
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC------
Confidence 999999999999999999999999999999999999999998875433 334567889999999999876543
Q ss_pred ceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 381 KIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 381 ~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
|+||+|||+|+.||++|+| ||++.|+|++|+.++|.+||+.+++...+..++|+..||..|+||||+||.++|++|
T Consensus 288 --V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA 365 (405)
T 4b4t_J 288 --IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEA 365 (405)
T ss_dssp --EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred --eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCC
Q 009911 459 SLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQR 502 (522)
Q Consensus 459 ~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~ 502 (522)
.+.++++. ...|+++||..|++++.+
T Consensus 366 ~~~Air~~------------------~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 366 GMYALRER------------------RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHTT------------------CSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHcC------------------CCCcCHHHHHHHHHHHhC
Confidence 99998864 457999999999998754
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-47 Score=401.90 Aligned_cols=265 Identities=35% Similarity=0.582 Sum_probs=231.8
Q ss_pred hhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
...+++.|+|+|+||+|++++|+.|++.+.+|+.++++|...+ .+++|||||||||||||+||++||++++.+|+.+++
T Consensus 197 ~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 197 MMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276 (467)
T ss_dssp CCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred eeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence 3456788999999999999999999999999999999999765 788999999999999999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcCCCCCCCCCCcce
Q 009911 305 ATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVNNTGTNEDGSRKI 382 (522)
Q Consensus 305 ~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~ 382 (522)
+.+.++|.|++++.++.+|..|+..+||||||||||.++..|.... ......+++..||..|+++.....
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~-------- 348 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN-------- 348 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT--------
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc--------
Confidence 9999999999999999999999999999999999999998875443 334556788899999998765543
Q ss_pred EEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 383 VMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 383 VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|+||+|||+|+.||++|+| ||++.|+|++|+.++|.+||+.+++...+..++|++.||..|+||||+||.++|++|.+
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~ 428 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGM 428 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCC-HHHHHHHHHHH
Q 009911 461 NGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVS-QADIEKHEKWF 516 (522)
Q Consensus 461 ~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs-~~~~~~~~~w~ 516 (522)
.++++. ...|+++||..|++++..+.- .+...+|.+|.
T Consensus 429 ~Air~~------------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 429 FAIRAR------------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp HHHHHT------------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHcC------------------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 999875 457999999999998743221 23456787773
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-48 Score=402.07 Aligned_cols=256 Identities=34% Similarity=0.606 Sum_probs=233.5
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
..+++.|+++|+||+|++++|+.|.+.+.+|+.++++|...+ .+++|||||||||||||+||++||++++.+|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 345778999999999999999999999999999999999765 6679999999999999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009911 306 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIV 383 (522)
Q Consensus 306 ~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~V 383 (522)
++.++|.|++++.++.+|..|+..+||||||||||.++..|.... .+....+++..||..|+++..... |
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~--------V 322 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD--------V 322 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS--------E
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC--------E
Confidence 999999999999999999999999999999999999998885432 234567788999999998876543 9
Q ss_pred EEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009911 384 MVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 384 ivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~ 461 (522)
+||+|||+|+.||+||+| ||++.|+|++||.++|.+||+.++....+..++|++.||..|+||||+||.++|++|.+.
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~ 402 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLL 402 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHH
Q 009911 462 GMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQAD 508 (522)
Q Consensus 462 a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~ 508 (522)
++++. ...|+++||..|++++.++.+.++
T Consensus 403 Air~~------------------~~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 403 ALRER------------------RMQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp HHHTT------------------CSCBCHHHHHHHHHHHHHHHCCCS
T ss_pred HHHcC------------------CCccCHHHHHHHHHHHhCCCChhh
Confidence 98875 457999999999998876655443
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-47 Score=401.37 Aligned_cols=263 Identities=36% Similarity=0.584 Sum_probs=234.4
Q ss_pred HhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 224 LERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 224 ~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
+....+.+.|+++|+||+|++++|+.|.+.+.+|+.+|++|...+ .+++|||||||||||||+||++||++++++|+.+
T Consensus 167 ~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 167 VYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred hheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 344566778999999999999999999999999999999999654 6779999999999999999999999999999999
Q ss_pred ehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcCCCCCCCCCCc
Q 009911 303 SSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVNNTGTNEDGSR 380 (522)
Q Consensus 303 ~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 380 (522)
+++.+.++|.|++++.++.+|..|+.++||||||||||.++.+|...+ .+....+++..||..|+++.....
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~------ 320 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ------ 320 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS------
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC------
Confidence 999999999999999999999999999999999999999998875433 344567788999999999876543
Q ss_pred ceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 381 KIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 381 ~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
|+||+|||+|+.||++|+| ||++.|+||+|+.++|.+||+.++....+..++|+..||..|+||||+||.++|++|
T Consensus 321 --vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 321 --TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEA 398 (437)
T ss_dssp --SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred --eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8999999999999999998 699999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHH
Q 009911 459 SLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKH 512 (522)
Q Consensus 459 ~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~ 512 (522)
.+.++++. ...|+++||..|++++.++...+....|
T Consensus 399 ~~~air~~------------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~ 434 (437)
T 4b4t_L 399 GFFAIRDD------------------RDHINPDDLMKAVRKVAEVKKLEGTIEY 434 (437)
T ss_dssp HHHHHHTT------------------CSSBCHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHcC------------------CCCCCHHHHHHHHHHHHhccCcccchhh
Confidence 99998864 4579999999999998877665544443
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-47 Score=397.69 Aligned_cols=256 Identities=37% Similarity=0.584 Sum_probs=234.1
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
....+++.|+++|+||+|++++|+.|.+.+.+|+.+|++|...+ .+++|||||||||||||+||++||++++.+|+.++
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 44456778999999999999999999999999999999998755 66799999999999999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc--hhhHHHHHHHHHHHhhhcCCCCCCCCCCcc
Q 009911 304 SATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE--HESSRRVKSELLVQVDGVNNTGTNEDGSRK 381 (522)
Q Consensus 304 ~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~--~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 381 (522)
++.+.++|.|++++.++.+|..|+..+||||||||||.++..|..... .....+++..||..|+++.....
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~------- 320 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR------- 320 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS-------
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC-------
Confidence 999999999999999999999999999999999999999988754322 23456778899999999876543
Q ss_pred eEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 009911 382 IVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 382 ~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
|+||+|||+|+.||++|+| ||++.|+|++|+.++|.+||+.+++...+..++|+..||..|+||||+||.++|++|.
T Consensus 321 -ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 321 -VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp -SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred -EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCH
Q 009911 460 LNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQ 506 (522)
Q Consensus 460 ~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~ 506 (522)
+.++++. ...|+++||..|+.+++++.+.
T Consensus 400 ~~a~r~~------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 400 MIALRNG------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HHHHHHT------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred HHHHHcC------------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 9998875 4589999999999999987663
No 6
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.8e-47 Score=404.94 Aligned_cols=296 Identities=45% Similarity=0.809 Sum_probs=242.0
Q ss_pred hhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-C
Q 009911 218 PDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-G 296 (522)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-g 296 (522)
..+.+.+...++..+|+++|+||+|++++++.|.+.+.+|+..+++|.+...++++|||+||||||||+||++||+++ +
T Consensus 114 ~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~ 193 (444)
T 2zan_A 114 KKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN 193 (444)
T ss_dssp ----------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS
T ss_pred HHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346777888899999999999999999999999999999999999998777788999999999999999999999999 8
Q ss_pred CcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCC
Q 009911 297 TTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNE 376 (522)
Q Consensus 297 ~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~ 376 (522)
.+|+.+++..+.+.|.|..+..++.+|..++...|+||||||||.++..+... ......++++.|+..|+++...
T Consensus 194 ~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~---- 268 (444)
T 2zan_A 194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD---- 268 (444)
T ss_dssp SEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSCC----
T ss_pred CCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCcccC----
Confidence 99999999999999999998899999999999999999999999998776443 4567788999999999886532
Q ss_pred CCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-CCcccHHHHHHHcCCCcHHHHHHHH
Q 009911 377 DGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-SKDVDIDEVARRTDGYSGDDLTNVC 455 (522)
Q Consensus 377 ~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-~~~~dl~~LA~~t~Gys~~dI~~lv 455 (522)
...|+||+|||.++.++++++|||+..++++.|+.++|..||+.++..... ..+.++..||..++||+++||..+|
T Consensus 269 ---~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 269 ---NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp ---CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ---CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 133899999999999999999999999999999999999999999977654 3568899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChHH-------------------------------HhhccccccCCCCccHHHHHHHHHhhCCCC
Q 009911 456 RDASLNGMRRKIAGKTRDE-------------------------------IKNMSKDEISKDPVAMCDFEEALTKVQRSV 504 (522)
Q Consensus 456 ~~A~~~a~~r~~~~~~~~~-------------------------------i~~~~~~~~~~~~lt~~df~~AL~~~~~sv 504 (522)
++|.+.++++.+....-.. ......+.+...+||++||..||+.++|||
T Consensus 346 ~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 346 RDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp HHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC
Confidence 9999999998754210000 001112233356899999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC
Q 009911 505 SQADIEKHEKWFQEFGS 521 (522)
Q Consensus 505 s~~~~~~~~~w~~~fg~ 521 (522)
+.+++++|++|.++||+
T Consensus 426 ~~~~~~~~~~~~~~~~~ 442 (444)
T 2zan_A 426 NEQDLLKLKKFTEDFGQ 442 (444)
T ss_dssp CHHHHHHHHHHTSSCTT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999999997
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-46 Score=393.32 Aligned_cols=258 Identities=36% Similarity=0.574 Sum_probs=233.6
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
..+.+.|+++|+||+|++++|+.|.+.+.+|+.++++|...+ .+++|+|||||||||||+||++||++++++|+.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 345678999999999999999999999999999999999754 6779999999999999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009911 306 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIV 383 (522)
Q Consensus 306 ~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~V 383 (522)
++.++|.|+++..++.+|..|+..+||||||||+|.++..|... ..+....++++.||..|+++....+ |
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~--------v 312 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN--------V 312 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS--------E
T ss_pred hhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC--------E
Confidence 99999999999999999999999999999999999999887433 3344667899999999999876543 9
Q ss_pred EEEeecCCCCCccHHHHh--hcccccccC-CCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 384 MVLAATNFPWDIDEALRR--RLEKRIYIP-LPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 384 ivIattn~p~~ld~aL~r--Rf~~~i~i~-~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
+||+|||+|+.||++|+| ||++.|+|| +|+.++|..||+.++....+..++|+..||..|+||||+||.++|++|.+
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999997 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHh-hCCCCCHHHHH
Q 009911 461 NGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTK-VQRSVSQADIE 510 (522)
Q Consensus 461 ~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~-~~~svs~~~~~ 510 (522)
.++++. ...|+++||.+|+.+ ++++.+.++++
T Consensus 393 ~a~r~~------------------~~~i~~~d~~~A~~~~~~~~~~~~~~d 425 (428)
T 4b4t_K 393 RAVRKN------------------RYVILQSDLEEAYATQVKTDNTVDKFD 425 (428)
T ss_dssp HHHHTT------------------CSSBCHHHHHHHHHHHSCSCCCSSCCC
T ss_pred HHHHCC------------------CCCCCHHHHHHHHHHhhCccCCccHhh
Confidence 999875 457999999999987 45565544443
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.3e-48 Score=434.14 Aligned_cols=286 Identities=41% Similarity=0.672 Sum_probs=197.9
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.....|+++|+||+|++++|+.|.+.+.+|+.+++.|... ..++++||||||||||||++|+++|++++.+|+.++.++
T Consensus 467 ~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~ 546 (806)
T 3cf2_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccch
Confidence 3456789999999999999999999999999999999865 477899999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVM 384 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Vi 384 (522)
+.++|.|++++.++.+|+.|+..+||||||||||.|+..|+.. ..+....+++++||.+|+++..... |+
T Consensus 547 l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~--------V~ 618 (806)
T 3cf2_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--------VF 618 (806)
T ss_dssp HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS--------EE
T ss_pred hhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC--------EE
Confidence 9999999999999999999999999999999999999988543 3456778999999999999876533 99
Q ss_pred EEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 385 VLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 385 vIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
||+|||+|+.||++++| ||++.|+|++|+.++|.+||+.+++...+..++|+..||+.|+||||+||.++|++|.+.+
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a 698 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHH
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHh-hc------cccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC
Q 009911 463 MRRKIAGKTRDEIK-NM------SKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 521 (522)
Q Consensus 463 ~~r~~~~~~~~~i~-~~------~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg~ 521 (522)
+|+.+......... .. ........+|+++||.+||++++||||++++++|++|.++|+.
T Consensus 699 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 699 IRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp HHHHHC-----------------------CCC----CCTTTC---------------CCCC-----
T ss_pred HHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 99986432111000 00 0011124589999999999999999999999999999999874
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=369.63 Aligned_cols=286 Identities=47% Similarity=0.833 Sum_probs=250.9
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEeehhh
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-GTTFFNVSSAT 306 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-g~~~i~v~~~~ 306 (522)
++.+.|+++|+||+|++++|+.|.+.+.+|+..+++|.+...++++|||+||||||||+||+++|+++ +.+|+.+++..
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45678999999999999999999999999999999999877888999999999999999999999999 89999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVL 386 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivI 386 (522)
+.+.|.|..+..++.+|..++...|+||||||||.++..+... ......++++.|+..|+++.... ..++||
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~-------~~v~vI 153 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVDN-------DGILVL 153 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSCC-------TTEEEE
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccccC-------CCEEEE
Confidence 9999999999999999999999999999999999999876543 45677889999999999875321 339999
Q ss_pred eecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 009911 387 AATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRR 465 (522)
Q Consensus 387 attn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r 465 (522)
++||.|+.++++++|||+..++++.|+.++|..||+.++...... .+.++..||..++||+++||..+|++|.+.++++
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred EecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876543 5678999999999999999999999999999998
Q ss_pred HhhcCChH-------------------------------HHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHH
Q 009911 466 KIAGKTRD-------------------------------EIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEK 514 (522)
Q Consensus 466 ~~~~~~~~-------------------------------~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~ 514 (522)
......-. ....+..+.+...+|+++||..||++++||++.+++++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~ 313 (322)
T 1xwi_A 234 VQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKK 313 (322)
T ss_dssp HHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHH
T ss_pred HHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 76321100 00111222333568999999999999999999999999999
Q ss_pred HHHHhcC
Q 009911 515 WFQEFGS 521 (522)
Q Consensus 515 w~~~fg~ 521 (522)
|.++||+
T Consensus 314 ~~~~~~~ 320 (322)
T 1xwi_A 314 FTEDFGQ 320 (322)
T ss_dssp HHHTTCS
T ss_pred HHHHHcc
Confidence 9999997
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.1e-44 Score=369.26 Aligned_cols=296 Identities=45% Similarity=0.799 Sum_probs=239.0
Q ss_pred hhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 218 PDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
..+.+.+...+...+++++|+||+|++++++.|.+++.+|+..+++|.....++++|||+||||||||+||+++|++++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 31 KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp ----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34666777888889999999999999999999999999999999999987788899999999999999999999999999
Q ss_pred cEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCC
Q 009911 298 TFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNED 377 (522)
Q Consensus 298 ~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~ 377 (522)
+|+.+++.++.+.+.|..+..++.+|..++...|+||||||||.|...+.. .......++++.|+..|+++....
T Consensus 111 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~~~---- 185 (355)
T 2qp9_X 111 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGNDS---- 185 (355)
T ss_dssp EEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC-------
T ss_pred CEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhcccccC----
Confidence 999999999999999999999999999999999999999999999877643 345677888999999999875421
Q ss_pred CCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-CCcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 378 GSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-SKDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 378 ~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-~~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
..|+||++||.++.++++++|||+..++++.|+.++|..||+.++..... ..+.++..||..++||+++||.++|+
T Consensus 186 ---~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 186 ---QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ---CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33999999999999999999999999999999999999999999987654 35778999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCh------H-------------------HHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHH
Q 009911 457 DASLNGMRRKIAGKTR------D-------------------EIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEK 511 (522)
Q Consensus 457 ~A~~~a~~r~~~~~~~------~-------------------~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~ 511 (522)
+|.+.++++....... + .+..+..+.+...+|+++||..||..++||++.+++++
T Consensus 263 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~ 342 (355)
T 2qp9_X 263 DALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLK 342 (355)
T ss_dssp HHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999986532100 0 00111223344578999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 009911 512 HEKWFQEFGS 521 (522)
Q Consensus 512 ~~~w~~~fg~ 521 (522)
|++|.++||+
T Consensus 343 ~~~~~~~~~~ 352 (355)
T 2qp9_X 343 QEQFTRDFGQ 352 (355)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHhcc
Confidence 9999999996
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=6.5e-44 Score=364.62 Aligned_cols=287 Identities=45% Similarity=0.816 Sum_probs=250.6
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.++.++|+++|+||+|++++++.|.+++.+|+..+++|.....++++|||+||||||||+||+++|++++.+|+.+++..
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 46778999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVL 386 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivI 386 (522)
+.+.+.|..+..++.+|..++...|+||||||||.|...+.. .......+++..|+..|+++.... ..|+||
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~-------~~v~vi 158 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGNDS-------QGVLVL 158 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSC-------CCEEEE
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhccccccC-------CceEEE
Confidence 999999999999999999999999999999999999877643 345567889999999999875322 339999
Q ss_pred eecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 009911 387 AATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRR 465 (522)
Q Consensus 387 attn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r 465 (522)
++||.++.+++++++||+..++++.|+.++|.+||+.++...... .+.++..|+..++||+++||.++|++|.+.++++
T Consensus 159 ~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 159 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp EEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred EecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876543 5678999999999999999999999999999999
Q ss_pred HhhcCChHH-------------------------HhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Q 009911 466 KIAGKTRDE-------------------------IKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520 (522)
Q Consensus 466 ~~~~~~~~~-------------------------i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg 520 (522)
......... +..+..+.+...+||++||.+||+.++|+++.+++++|++|+++||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~ 318 (322)
T 3eie_A 239 IQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 318 (322)
T ss_dssp HHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC
T ss_pred HhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Confidence 865422111 1122233344578999999999999999999999999999999999
Q ss_pred C
Q 009911 521 S 521 (522)
Q Consensus 521 ~ 521 (522)
+
T Consensus 319 ~ 319 (322)
T 3eie_A 319 Q 319 (322)
T ss_dssp -
T ss_pred C
Confidence 7
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=7.5e-41 Score=338.80 Aligned_cols=287 Identities=41% Similarity=0.688 Sum_probs=244.2
Q ss_pred hhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
++++.+.|+++|+||+|++++++.|.+++..|+..++.|...+ .+++++||+||||||||+||+++|++++.+|+.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 4566778999999999999999999999999999999888654 567899999999999999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCCcce
Q 009911 305 ATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKI 382 (522)
Q Consensus 305 ~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~ 382 (522)
..+.+.+.|..+..++.+|..+....|+||||||||.+...++.. .......+++..|+..|+++... ..
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--------~~ 154 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--------KN 154 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT--------SS
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC--------CC
Confidence 999999999999999999999999999999999999998776432 11234457788999999976543 23
Q ss_pred EEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 383 VMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 383 VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|+||++||.++.++++++| ||+..++++.|+.++|.+||+.++....+..++++..|+..++||+++||.++|++|.+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~ 234 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACK 234 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988887788999999999999999999999999999
Q ss_pred HHHHHHhhcCCh-HHHhh-----cc-ccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Q 009911 461 NGMRRKIAGKTR-DEIKN-----MS-KDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520 (522)
Q Consensus 461 ~a~~r~~~~~~~-~~i~~-----~~-~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg 520 (522)
.++++.+..... ..... .. .......+|+++||..||+.++++++.++++.|++|.++|.
T Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 235 LAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 999887532110 00000 00 00111358999999999999999999999999999999984
No 13
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=348.37 Aligned_cols=296 Identities=45% Similarity=0.764 Sum_probs=239.9
Q ss_pred CCCChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHH
Q 009911 214 EGPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 214 ~~~~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~ 293 (522)
...+..+.+.+.+++++.+++++|+||+|++.+++.|.+++..|+..+++|.+...+.++|||+||||||||+||++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 91 RNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp ------CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred ccccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34555677788889999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC
Q 009911 294 ECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG 373 (522)
Q Consensus 294 ~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~ 373 (522)
+++.+|+.+++..+.+.|.|..+..++.+|..++...|+||||||||.|+..+. ........+++..|+..+++.....
T Consensus 171 ~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR-EGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp HTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC---
T ss_pred hhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCC-CccchHHHHHHHHHHHHhhcccccC
Confidence 999999999999999999999999999999999999999999999999987653 3345567889999999999876532
Q ss_pred CCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHH
Q 009911 374 TNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLT 452 (522)
Q Consensus 374 ~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~ 452 (522)
...|+||++||.++.+++++++||...++++.|+.++|..||+.++...... .+.++..|+..++||++++|.
T Consensus 250 ------~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 250 ------DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp --------CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred ------CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 2349999999999999999999999899999999999999999988764332 345788999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC
Q 009911 453 NVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGSA 522 (522)
Q Consensus 453 ~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg~~ 522 (522)
.||+.|+..++++.... .+..+... ....|+.+||..++..+.++++.+.++.|++|.+.||+.
T Consensus 324 ~L~~~a~~~~~rel~~~----~~~~~~~~--~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 324 ALAKDAALGPIRELKPE----QVKNMSAS--EMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp HHHHHHTTHHHHTSCCC-------CCSSS--CCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhhhhh----hhhccchh--hcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 99999999988875321 12222111 246899999999999999999999999999999999973
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.4e-41 Score=376.66 Aligned_cols=265 Identities=38% Similarity=0.635 Sum_probs=234.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
...+.++|+||+|++++++.|++.+.+|+.+|++|...+ .+++|||||||||||||+||++||++++.+|+.+++.++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 345789999999999999999999999999999999865 7889999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee
Q 009911 309 SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA 388 (522)
Q Consensus 309 ~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat 388 (522)
++|.|+++..++.+|..|+.++|+||||||||.|+.++.. ..++..++++++|+..|+++.... .|+||++
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~-~~~~~~~riv~~LL~~mdg~~~~~--------~V~VIaa 346 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQRA--------HVIVMAA 346 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTT-CCCTTHHHHHHHHHTHHHHCCGGG--------CEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCC-CCChHHHHHHHHHHHHHhcccccC--------CEEEEEe
Confidence 9999999999999999999999999999999999988754 345667899999999999987653 3999999
Q ss_pred cCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 389 TNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 389 tn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
||+++.||++|+| ||++.|+|+.|+.++|.+||+.+++...+..++|+..||..|+||+++||..+|++|.+.+++|.
T Consensus 347 TN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~ 426 (806)
T 3cf2_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426 (806)
T ss_dssp CSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 99999999999999999999999999988999999999999999999999999999999999987
Q ss_pred hhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCC
Q 009911 467 IAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSV 504 (522)
Q Consensus 467 ~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~sv 504 (522)
...++.... ....+.+....|+++||..|+..++|+.
T Consensus 427 ~~~i~~~~~-~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 427 MDLIDLEDE-TIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHGGGTCC-CCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred ccccccccc-ccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 643221100 0001112245799999999999988754
No 15
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=336.55 Aligned_cols=298 Identities=44% Similarity=0.806 Sum_probs=252.3
Q ss_pred ccCCCChhHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHH
Q 009911 212 EYEGPDPDLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAV 291 (522)
Q Consensus 212 ~~~~~~~~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LArai 291 (522)
.....++.+.+.+.+++++++++++|+||+|++.+++.|.+.+..|+..+++|.....++++|||+||||||||+||+++
T Consensus 58 ~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 58 RLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred HhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999988877778899999999999999999999
Q ss_pred HHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC
Q 009911 292 ATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 292 A~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
|++++.+|+.+++..+...+.|..+..++.+|..+....|+||||||||.|...+. ...+....+++..|+..+++...
T Consensus 138 a~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~-~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG-DGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp HHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC---
T ss_pred HHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCC-CCcchHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999987653 23456678889999999997653
Q ss_pred CCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHH
Q 009911 372 TGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDD 450 (522)
Q Consensus 372 ~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~d 450 (522)
.. ...++||++||.++.+++++++||...++++.|+.++|..|++.++...... .+.++..|+..++||+++|
T Consensus 217 ~~------~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 217 SS------EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp -C------CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred cC------CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH
Confidence 21 2348999999999999999999999999999999999999999988764432 4567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCC
Q 009911 451 LTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGSA 522 (522)
Q Consensus 451 I~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg~~ 522 (522)
|..+|++|++.++++..... ...+.. ....+|+++||..||..++|+++.+++++|++|.+.||+.
T Consensus 291 l~~l~~~a~~~~ir~l~~~~----~~~~~~--~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 291 MTQLCREASLGPIRSLQTAD----IATITP--DQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HHHHHHHHHTHHHHHCCC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhhhhh----hccccc--cccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999888643211 111111 1246899999999999999999999999999999999973
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=5.9e-39 Score=323.21 Aligned_cols=291 Identities=43% Similarity=0.736 Sum_probs=242.5
Q ss_pred hHHHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 219 DLAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.+.+++.+.++.++++++|+||+|++.+++.|.+.+..|+..+++|.+...+++++||+||||||||++|+++|++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 46788889999999999999999999999999999999999999988877788999999999999999999999999999
Q ss_pred EEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCC
Q 009911 299 FFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDG 378 (522)
Q Consensus 299 ~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~ 378 (522)
|+.+++..+...+.+..+..++.+|..+....|+||||||+|.+...+.. .......+++..|+..+++.....
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~----- 155 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNP----- 155 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC--------
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc-CcchHHHHHHHHHHHHHhcccccC-----
Confidence 99999999999999999999999999999999999999999999876643 234456778889999999876432
Q ss_pred CcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-CCcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 379 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-SKDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 379 ~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-~~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
....++||++||.++.+++++++||...++++.|+.++|..|++.++..... ..+.++..|+..+.||++++|..+|++
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1134899999999999999999999999999999999999999998876543 245568899999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcC
Q 009911 458 ASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 521 (522)
Q Consensus 458 A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg~ 521 (522)
|++.++++.... ...... .....+|+.+||..|+..++++++.++++.|++|.+.||+
T Consensus 236 a~~~a~r~~~~~----~~~~~~--~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 236 AALEPIRELNVE----QVKCLD--ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp HTTHHHHTCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhhh----hccccc--ccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 999998875321 111111 1124589999999999999999999999999999999997
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.7e-38 Score=312.64 Aligned_cols=263 Identities=39% Similarity=0.625 Sum_probs=208.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 231 TSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 231 ~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
..|+++|+||+|++++|+.|.+++.+|+..++.+.... .+++|++|+||||||||+|+++||.+++..++.+++..+..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35789999999999999999999999999999988665 55678999999999999999999999999999999999988
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeec
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAAT 389 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIatt 389 (522)
.+.++.+..+..+|+.++...|+++|+||||.++..+... ......++.+.++..|++.... ..++++++|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~~--------~~~i~ia~t 153 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEAR--------QQVFIMAAT 153 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCST--------TCEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhccccc--------CCEEEEeec
Confidence 8889999999999999988899999999999987654322 2223456778899999977543 338999999
Q ss_pred CCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHcc---CCCCCcccHHHHHHHc--CCCcHHHHHHHHHHHHHHH
Q 009911 390 NFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKT---VEVSKDVDIDEVARRT--DGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 390 n~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~---~~l~~~~dl~~LA~~t--~Gys~~dI~~lv~~A~~~a 462 (522)
|.|+.||++++| ||++.|++++|+.++|.+||+.+++. ..+..++++..||..+ +||||+||.++|++|.+.+
T Consensus 154 n~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a 233 (274)
T 2x8a_A 154 NRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICA 233 (274)
T ss_dssp SCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999998854 3456789999999975 5999999999999999999
Q ss_pred HHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHH
Q 009911 463 MRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADI 509 (522)
Q Consensus 463 ~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~ 509 (522)
+++.+..... ........|+++||..||++++||++.+++
T Consensus 234 ~~~~~~~~~~-------~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 234 LRQEMARQKS-------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HHHHC------------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred HHHHHhhccc-------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 9886532110 111224589999999999999999998875
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.5e-34 Score=289.01 Aligned_cols=268 Identities=37% Similarity=0.640 Sum_probs=218.4
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
+...|+++|+||+|++++++.|.+++..++..++.+...+ .+++++||+||||||||++|+++|+.++.+++.+++..+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3557789999999999999999999999998888888654 566899999999999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
...+.|..+..+..+|..+....|+||||||||.++.++.... ........+..++..++++.... .++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~--------~~~v 159 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG--------DVKI 159 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS--------SEEE
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC--------CEEE
Confidence 9999999999999999999999999999999999987664321 12234455566777776654432 3899
Q ss_pred EeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009911 386 LAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGM 463 (522)
Q Consensus 386 Iattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~ 463 (522)
|+|||.++.+++++++ ||+..+.++.|+.++|.+||+.++....+..++++..|+..+.||++++|..+|+.|.+.+.
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAI 239 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999988888888999999999999999999999999999888
Q ss_pred HHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHhcCC
Q 009911 464 RRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQR--SVSQADIEKHEKWFQEFGSA 522 (522)
Q Consensus 464 ~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~--svs~~~~~~~~~w~~~fg~~ 522 (522)
++. ...|+.+||.+|+..+.. ......-..|..|+..||+.
T Consensus 240 ~~~------------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (285)
T 3h4m_A 240 REL------------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHH 282 (285)
T ss_dssp HTT------------------CSSBCHHHHHHHHHHHHHHHCCC-----------------
T ss_pred Hhc------------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccC
Confidence 765 457999999999998642 44556678899999999974
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.4e-33 Score=303.01 Aligned_cols=265 Identities=38% Similarity=0.631 Sum_probs=229.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~ 311 (522)
+.++|++|+|++.+++.|.+++..|+..+++|...+ .++++|||+||||||||++|++||++++.+|+.+++..+.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 568899999999999999999999999999998764 6678999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC
Q 009911 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF 391 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~ 391 (522)
.|+.+..++.+|..+....|+||||||||.|..++.. ...+...+++..|+..|++..... .++||+|||.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~-~~~~~~~~~~~~LL~~ld~~~~~~--------~v~vIaaTn~ 349 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQRA--------HVIVMAATNR 349 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS-CCCHHHHHHHHHHHHHHHHSCTTS--------CEEEEEEESC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc-ccchHHHHHHHHHHHHhhccccCC--------ceEEEEecCC
Confidence 9999999999999999999999999999999987643 345677889999999999875443 3999999999
Q ss_pred CCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 009911 392 PWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAG 469 (522)
Q Consensus 392 p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~ 469 (522)
++.+++++++ ||...++|+.|+.++|.+||+.++....+..++++..|+..+.||+++||..+|++|.+.++++....
T Consensus 350 ~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~ 429 (489)
T 3hu3_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429 (489)
T ss_dssp GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999 99999999999999999999999999888888999999999999999999999999999999987653
Q ss_pred CChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHH
Q 009911 470 KTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQA 507 (522)
Q Consensus 470 ~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~ 507 (522)
++.+.. ....+......|+++||..||+.++|+...+
T Consensus 430 i~~~~~-~~~~~~~~~~~vt~edf~~Al~~~~ps~~re 466 (489)
T 3hu3_A 430 IDLEDE-TIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466 (489)
T ss_dssp CCTTCS-SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHG
T ss_pred cccccc-ccchhhcccCcCCHHHHHHHHHhCCchhhhc
Confidence 322110 0001112245899999999999988765433
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.6e-32 Score=270.83 Aligned_cols=248 Identities=39% Similarity=0.628 Sum_probs=211.5
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
+.+.+++.+|+||+|++.+++.|.+.+.. +..+..+... ...++++||+||||||||++|+++|+.++.+++.+++..
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 34567889999999999999999988765 5555555543 345679999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVM 384 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Vi 384 (522)
+...+.+..+..+..+|..+....|++|||||+|.+...+... .......+.+..++..++++... ..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~ 152 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--------EGII 152 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS--------SCEE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC--------CCEE
Confidence 9888888888889999999998889999999999998765432 22334457788899999876543 2389
Q ss_pred EEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 385 VLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 385 vIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
||++||.++.+++++++ ||++.++++.|+.++|.+|++.++....+..+.++..++..+.||+++||.++|++|.+.+
T Consensus 153 vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFA 232 (257)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998 9999999999999999999999998888888899999999999999999999999999988
Q ss_pred HHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCC
Q 009911 463 MRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQR 502 (522)
Q Consensus 463 ~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~ 502 (522)
.++. ...|+++||..|+..+..
T Consensus 233 ~~~~------------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 233 ARGN------------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHTT------------------CSSBCHHHHHHHHHHHTT
T ss_pred HHhC------------------CCcccHHHHHHHHHHHhc
Confidence 7764 458999999999998753
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.5e-32 Score=292.98 Aligned_cols=243 Identities=40% Similarity=0.650 Sum_probs=211.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK 310 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~ 310 (522)
.+.++|+||+|++++++.|.+.+.. +..+..|...+ .++++|||+||||||||+||++||.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5678999999999999999998875 45566666543 566899999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC--CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee
Q 009911 311 WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA 388 (522)
Q Consensus 311 ~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~--~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat 388 (522)
+.|.....++.+|..++...|+||||||||.+...++. .+.+....++++.|+..|+++... ..|+||++
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--------~~viVIaa 160 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK--------EGIIVMAA 160 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG--------GTEEEEEE
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC--------CCEEEEEe
Confidence 99998889999999999999999999999999876643 233445567889999999987543 23999999
Q ss_pred cCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 389 TNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 389 tn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
||.++.++++++| ||++.|.|+.|+.++|.+|++.+++...+..++++..||..+.||+++||.++|++|.+.+.++.
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~ 240 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG 240 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC
Confidence 9999999999998 99999999999999999999999998888888999999999999999999999999998887653
Q ss_pred hhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 467 IAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 467 ~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
...|+++||..|+.++.
T Consensus 241 ------------------~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 241 ------------------RDKITMKDFEEAIDRVI 257 (476)
T ss_dssp ------------------CSSBCHHHHHHHHHHHC
T ss_pred ------------------CCeecHHHHHHHHHHHh
Confidence 45799999999999874
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.8e-36 Score=343.82 Aligned_cols=285 Identities=41% Similarity=0.672 Sum_probs=216.8
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.....+.+.|+|++|++++++.|.+++.+|+..+..+.... .++.++||+||||||||+||+++|++++.+|+.+++..
T Consensus 467 ~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechH
Confidence 34567899999999999999999999999998888877654 56689999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVM 384 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Vi 384 (522)
+.++|.|+.+..++.+|+.++...|+||||||||.++..++... ......++++.||..|+++... ..|+
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--------~~v~ 618 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--------KNVF 618 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------------CCB
T ss_pred hhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc--------CCeE
Confidence 99999999999999999999999999999999999988775432 2346788999999999987544 3389
Q ss_pred EEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 385 VLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 385 vIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
||+|||.++.||++++| ||++.|+++.|+.++|..||+.++....+..++++..|+..++|||++||.++|++|.+.+
T Consensus 619 vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a 698 (806)
T 1ypw_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698 (806)
T ss_dssp CCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999888888899999999999999999999999999999
Q ss_pred HHHHhhcCCh-HHHhhc------cccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Q 009911 463 MRRKIAGKTR-DEIKNM------SKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 520 (522)
Q Consensus 463 ~~r~~~~~~~-~~i~~~------~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~~w~~~fg 520 (522)
+++.+..... ...... ........+|+++||.+|++..+++++.+++++|++|.++|+
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 699 IRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp HSCC------------------------CCTTTTTTSSCCCCCC---------------------
T ss_pred HHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 9886532110 000000 001122457999999999999999999999999999999875
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.98 E-value=8.2e-32 Score=265.32 Aligned_cols=242 Identities=38% Similarity=0.605 Sum_probs=186.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~ 311 (522)
|+++|+||+|++++++.|.+++.. +..++.|... ..+++++||+||||||||++|+++|++++.+++.+++..+...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 578999999999999999998765 4455554433 35567999999999999999999999999999999999998888
Q ss_pred hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC---chhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee
Q 009911 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG---EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA 388 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~---~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat 388 (522)
.+.....+..+|..+....|+||||||+|.+...+.... ........+..|+..+++.... ..++||++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--------~~~~vi~~ 151 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT--------DHVIVLAS 151 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT--------CCEEEEEE
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC--------CCEEEEec
Confidence 888888899999999988899999999999986653221 1222345567778778765432 23899999
Q ss_pred cCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCccc--HHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009911 389 TNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVD--IDEVARRTDGYSGDDLTNVCRDASLNGMR 464 (522)
Q Consensus 389 tn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~d--l~~LA~~t~Gys~~dI~~lv~~A~~~a~~ 464 (522)
||.++.+++++++ ||+..++++.|+.++|.+||+.++....+..+.+ +..|+..+.||++++|..+|+.|...+.+
T Consensus 152 tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~ 231 (262)
T 2qz4_A 152 TNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231 (262)
T ss_dssp ESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---
T ss_pred CCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999998776654433 47899999999999999999999888776
Q ss_pred HHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 465 RKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 465 r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
+. ...|+.+||..|+.++.
T Consensus 232 ~~------------------~~~i~~~d~~~a~~~~~ 250 (262)
T 2qz4_A 232 EG------------------HTSVHTLNFEYAVERVL 250 (262)
T ss_dssp -----------------------CCBCCHHHHHHHHH
T ss_pred cC------------------CCCCCHHHHHHHHHHhc
Confidence 54 35788899999998764
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=9.1e-31 Score=257.73 Aligned_cols=243 Identities=39% Similarity=0.618 Sum_probs=201.3
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
++...|.++|+||+|+++++..+.+.+.. +..+..+.... ..++|++|+||||||||+|++++|..++..++.+++..
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 45677899999999999999999987765 34445555433 45578999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009911 307 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVM 384 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Vi 384 (522)
+...+.+.....+..+|+.+....|+++||||||.+...+... .........+..++..|++.... ..++
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--------~~~i 156 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--------TAIV 156 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT--------CCEE
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC--------CCEE
Confidence 8887778777888999999887789999999999998655321 12334456778888888865433 2389
Q ss_pred EEeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009911 385 VLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 385 vIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a 462 (522)
++++||.|+.+|++++| ||++.++++.|+.++|.+||+.+++...+..++++..||..++||+++||.++|++|...+
T Consensus 157 ~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 157 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 236 (254)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998 8999999999999999999999988888888899999999999999999999999998887
Q ss_pred HHHHhhcCChHHHhhccccccCCCCccHHHHHHHH
Q 009911 463 MRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEAL 497 (522)
Q Consensus 463 ~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL 497 (522)
.++. ...|+++||.+|+
T Consensus 237 ~~~~------------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 237 AREG------------------RRKITMKDLEEAA 253 (254)
T ss_dssp HHTT------------------CSSBCHHHHHHHT
T ss_pred HHhc------------------CCCcCHHHHHHHh
Confidence 7653 3579999999886
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=5.7e-31 Score=282.31 Aligned_cols=243 Identities=38% Similarity=0.611 Sum_probs=209.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKW 311 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~ 311 (522)
+.++|+||+|+++++..|.+.+.. +..+..+.... ..++++||+||||||||+||++||.+++.+|+.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 688999999999999999998765 44555555443 5567999999999999999999999999999999999998888
Q ss_pred hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCC--CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeec
Q 009911 312 RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGA--SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAAT 389 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~--~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIatt 389 (522)
.+.....++.+|+.+....|+||||||||.+...+.. ...+......++.|+..|++.... ..++++++|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~--------~~viviAat 176 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--------TAIVVMAAT 176 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS--------CCCEEEECC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC--------ccEEEEEec
Confidence 8888888999999888788999999999999866542 122344567788999999876543 238999999
Q ss_pred CCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 390 NFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 390 n~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
|.|+.+|++++| ||++.|.|+.|+.++|.+||+.+++...+..++++..||..+.||+++||.++|++|.+.+.++.
T Consensus 177 n~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~- 255 (499)
T 2dhr_A 177 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG- 255 (499)
T ss_dssp SCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC-
T ss_pred CChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC-
Confidence 999999999998 89999999999999999999999988888888999999999999999999999999988776543
Q ss_pred hcCChHHHhhccccccCCCCccHHHHHHHHHhhCC
Q 009911 468 AGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQR 502 (522)
Q Consensus 468 ~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~ 502 (522)
...|+++||.+|+.++.+
T Consensus 256 -----------------~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 256 -----------------RRKITMKDLEEAADRVMM 273 (499)
T ss_dssp -----------------CSSCCSHHHHHHHHHHTT
T ss_pred -----------------CCccCHHHHHHHHHHHhc
Confidence 357999999999998754
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=2.9e-29 Score=250.55 Aligned_cols=242 Identities=38% Similarity=0.616 Sum_probs=199.0
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
+...++++|+||+|++++++.+.+.+.. +..+..+.... ..+++++|+||||||||+|+++||..++..++.+++..+
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 3445789999999999999999987764 33444444433 445689999999999999999999999999999999988
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
...+.+.....+..+|+.+....|+++||||||.+...+... .........+..++..+++.... ..+++
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~--------~~~i~ 181 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--------TAIVV 181 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT--------CCEEE
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC--------CCEEE
Confidence 887777777788899999887889999999999987654321 11233456667788888765432 33899
Q ss_pred EeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009911 386 LAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGM 463 (522)
Q Consensus 386 Iattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~ 463 (522)
+++||.|+.+|++++| ||++.++|+.|+.++|.+||+.++....+..++++..||..++||+++||.++|++|...+.
T Consensus 182 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 182 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAA 261 (278)
T ss_dssp EEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998 89999999999999999999999988888888999999999999999999999999988776
Q ss_pred HHHhhcCChHHHhhccccccCCCCccHHHHHHHH
Q 009911 464 RRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEAL 497 (522)
Q Consensus 464 ~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL 497 (522)
++. ...|+++||.+|+
T Consensus 262 ~~~------------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 262 REG------------------RRKITMKDLEEAA 277 (278)
T ss_dssp HTT------------------CCSBCHHHHHHHT
T ss_pred HhC------------------CCCcCHHHHHHHh
Confidence 643 3579999999886
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=2.1e-32 Score=271.27 Aligned_cols=253 Identities=38% Similarity=0.601 Sum_probs=203.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhcc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGI-RRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~-~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
.+++++.|+||+|++.+++.|.+.+.. +..++.|... ..+++++||+||||||||++|+++|++++.+|+.+++..+.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 457789999999999999999998765 5566666543 35567899999999999999999999999999999999988
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCC---chhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 309 SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASG---EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 309 ~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~---~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
..+.|.....++.+|..+....|+||||||+|.+...+...+ .......++..|+..+++.... ...++|
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~v~v 154 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-------NAPVIV 154 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-------CSCCEE
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-------CCCEEE
Confidence 888777766678889999888999999999999986542111 1111223456677677654332 233899
Q ss_pred EeecCCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009911 386 LAATNFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGM 463 (522)
Q Consensus 386 Iattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~ 463 (522)
|+|||.++.+++++++ ||+..++|+.|+.++|.++|+.++....+..++++..|+..+.||+++||.++|+.|.+.+.
T Consensus 155 i~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 155 LAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAG 234 (268)
T ss_dssp EECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTS
T ss_pred EEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999988877788889999999999999999999999987664
Q ss_pred HHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHH
Q 009911 464 RRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQAD 508 (522)
Q Consensus 464 ~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~ 508 (522)
++. ...|+.+||.+|+.++.++.....
T Consensus 235 ~~~------------------~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 235 RNN------------------QKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp SSC------------------CCSCCHHHHHTSCTTCCCCCC---
T ss_pred Hhc------------------cCCcCHHHHHHHHHHHhhcchhhh
Confidence 432 457999999999999887765543
No 28
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=99.95 E-value=8.9e-29 Score=195.53 Aligned_cols=71 Identities=37% Similarity=0.625 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009911 5 NSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDA 75 (522)
Q Consensus 5 ~~~~~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i~~ 75 (522)
.++.+||||+++||||||+||||+|++||+|+++||++||.+|+||.+++||+++++||++|+++|+.|++
T Consensus 7 ~~~~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~i~~ 77 (78)
T 2rpa_A 7 MSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKDIMK 77 (78)
T ss_dssp SSSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999975
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=1.3e-27 Score=271.17 Aligned_cols=263 Identities=38% Similarity=0.636 Sum_probs=227.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 231 TSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 231 ~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~-~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
..+.++|+||+|++.+++.|.+.+.+|+.++++|.... .++.+|||+||||||||+||++||.+++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45689999999999999999999999999999999765 66789999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeec
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAAT 389 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIatt 389 (522)
.+.++.+..+..+|..+....|++|||||||.++..+.. ...+...+++..|+..+++..... .+++|++|
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~~~~~Ll~ll~g~~~~~--------~v~vI~at 347 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQRA--------HVIVMAAT 347 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC-CCSHHHHHHHHHHHHHHHSSCTTS--------CCEEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc-ccchHHHHHHHHHHHHhhhhcccc--------cEEEeccc
Confidence 999999999999999999999999999999999877643 334566788899999999876543 38999999
Q ss_pred CCCCCccHHHHh--hcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 390 NFPWDIDEALRR--RLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 390 n~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
|.++.+++++++ ||...+.++.|+.++|.+||+.++....+..+.++..++..+.||+++++..+|++|.+.++++..
T Consensus 348 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp SCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 999999999998 999999999999999999999999998888889999999999999999999999999999888765
Q ss_pred hcCChHHHhhccccccCCCCccHHHHHHHHHhhCCC
Q 009911 468 AGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRS 503 (522)
Q Consensus 468 ~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~s 503 (522)
........ ......+....++++||..++....++
T Consensus 428 ~~i~~~~~-~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 428 DLIDLEDE-TIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp TTTSCHHH-HCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred cccchhhh-ccchhhhhhhhhhhhhhhccccccCch
Confidence 43332211 111122335678999999999987754
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=4.9e-25 Score=221.98 Aligned_cols=179 Identities=21% Similarity=0.269 Sum_probs=134.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHH----HhhCCcEEEEechhhhhh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLA----RAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a----~~~~p~VL~IDEiD~l~~ 344 (522)
.+++++||+||||||||+||++||++++.+|+.++++.+.+.+.|..+..++.+|..+ +...|+||||||||.++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 4568999999999999999999999999999999999999999999999999999888 566899999999999987
Q ss_pred ccCCC-CchhhHHHHHHHHHHHhhhcCCCCC---CCCCCcceEEEEeecCCCCCccHHHHh--hcccccccCCCCHHHHH
Q 009911 345 ARGAS-GEHESSRRVKSELLVQVDGVNNTGT---NEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPNFESRK 418 (522)
Q Consensus 345 ~~~~~-~~~~~~~~~~~~Ll~~ld~~~~~~~---~~~~~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~Pd~~~R~ 418 (522)
.+... ........++..|+..|++...... ........|+||+|||.++.++++++| ||++.|+ .|+.++|.
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~ 191 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 191 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHH
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHH
Confidence 54322 1222456778999999985542110 001123459999999999999999997 8987777 46999999
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHH
Q 009911 419 ELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTN 453 (522)
Q Consensus 419 ~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~ 453 (522)
+|++.++.. .++++..++..++||++++|..
T Consensus 192 ~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 192 GVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 999988764 3577899999999999998864
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=1.4e-21 Score=197.10 Aligned_cols=213 Identities=20% Similarity=0.199 Sum_probs=163.5
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhc----cCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEeehhhh
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQG----IRRPWKGVLMFGPPGTGKTLLAKAVATECG-------TTFFNVSSATL 307 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~----~~~~~~~vLL~GppGtGKT~LAraiA~~lg-------~~~i~v~~~~l 307 (522)
+|+|++.+++.|.+++..+.. +..+.. ...+..++||+||||||||++|+++|+.++ .+++.+++..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998876542 333221 134556899999999999999999999983 48999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEe
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLA 387 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIa 387 (522)
.+.+.|.....+..+|..+ .++||||||+|.++..+. .......++..|+..|+.... .++||+
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~---~~~~~~~~~~~Ll~~l~~~~~----------~~~~i~ 174 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDN---ERDYGQEAIEILLQVMENNRD----------DLVVIL 174 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHHCTT----------TCEEEE
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCC---cccccHHHHHHHHHHHhcCCC----------CEEEEE
Confidence 9988998888888888776 468999999999975432 133456788889988886432 267888
Q ss_pred ecCCCC-----CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHH-------cCCCcHHHHHHH
Q 009911 388 ATNFPW-----DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARR-------TDGYSGDDLTNV 454 (522)
Q Consensus 388 ttn~p~-----~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~-------t~Gys~~dI~~l 454 (522)
++|.+. .++++|++||+..++|+.|+.+++..|++.++....+. .+..+..|+.. ....+++++.++
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~ 254 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNA 254 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 887653 35689999999999999999999999999998765433 22234556665 222458999999
Q ss_pred HHHHHHHHHHHHhh
Q 009911 455 CRDASLNGMRRKIA 468 (522)
Q Consensus 455 v~~A~~~a~~r~~~ 468 (522)
|+.|...+..|...
T Consensus 255 l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 255 LDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888777654
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.86 E-value=4.7e-21 Score=197.92 Aligned_cols=232 Identities=22% Similarity=0.216 Sum_probs=160.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehhhhhhhh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSATLASKW 311 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~~l~~~~ 311 (522)
...|++|+|.+.+++.+..+... ......+++++||+||||||||++|+++|+.++. +|+.+++..+...+
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 34499999999999887665432 2223344579999999999999999999999985 78888876533222
Q ss_pred h-------------------------------------------------chhHHHHHHHHHHHHh----h-----CCcE
Q 009911 312 R-------------------------------------------------GESERMVRCLFDLARA----Y-----APST 333 (522)
Q Consensus 312 ~-------------------------------------------------g~~e~~l~~~f~~a~~----~-----~p~V 333 (522)
. |.....++..+..+.. . .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 1 1112233444433322 1 2679
Q ss_pred EEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeec-----------CCCCCccHHHHhh
Q 009911 334 IFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAAT-----------NFPWDIDEALRRR 402 (522)
Q Consensus 334 L~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIatt-----------n~p~~ld~aL~rR 402 (522)
|||||+|.+. ...++.|+..++.... .++++++. |.+..++++|++|
T Consensus 193 l~IDEi~~l~------------~~~~~~L~~~le~~~~----------~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR 250 (368)
T 3uk6_A 193 LFIDEVHMLD------------IESFSFLNRALESDMA----------PVLIMATNRGITRIRGTSYQSPHGIPIDLLDR 250 (368)
T ss_dssp EEEESGGGSB------------HHHHHHHHHHTTCTTC----------CEEEEEESCSEEECBTSSCEEETTCCHHHHTT
T ss_pred EEEhhccccC------------hHHHHHHHHHhhCcCC----------CeeeeecccceeeeeccCCCCcccCCHHHHhh
Confidence 9999999874 3455677777754321 24555443 3468899999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhcccc
Q 009911 403 LEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKD 481 (522)
Q Consensus 403 f~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~ 481 (522)
|.. +.|+.|+.+++..|++..+...... ++..+..|+..+.+.+++++.++|+.|...+..+.
T Consensus 251 ~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~--------------- 314 (368)
T 3uk6_A 251 LLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK--------------- 314 (368)
T ss_dssp EEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT---------------
T ss_pred ccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---------------
Confidence 965 8999999999999999887654332 23447889999885689999999999988776654
Q ss_pred ccCCCCccHHHHHHHHHhh-CCCCCHHHHHHHH
Q 009911 482 EISKDPVAMCDFEEALTKV-QRSVSQADIEKHE 513 (522)
Q Consensus 482 ~~~~~~lt~~df~~AL~~~-~~svs~~~~~~~~ 513 (522)
...|+.+|+.+|+..+ ....+.+.++.|+
T Consensus 315 ---~~~It~~~v~~a~~~~~~~~~~~~~~~~~~ 344 (368)
T 3uk6_A 315 ---GTEVQVDDIKRVYSLFLDESRSTQYMKEYQ 344 (368)
T ss_dssp ---CSSBCHHHHHHHHHHSBCHHHHHHHHC---
T ss_pred ---CCCCCHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 4689999999999874 3233444444444
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.85 E-value=1.5e-20 Score=200.57 Aligned_cols=107 Identities=26% Similarity=0.320 Sum_probs=92.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEeehhhhhhh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG--TTFFNVSSATLASK 310 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg--~~~i~v~~~~l~~~ 310 (522)
|...|++|+|++++++.+.+++.. ......+++++||+||||||||++|+++|++++ .+|+.++++.+.++
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~-------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL-------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHH-------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 355689999999999998887742 233345668999999999999999999999999 99999999999999
Q ss_pred hhchhHHHHHHHHHHH---HhhCCcEEEEechhhhhhccC
Q 009911 311 WRGESERMVRCLFDLA---RAYAPSTIFIDEIDSLCNARG 347 (522)
Q Consensus 311 ~~g~~e~~l~~~f~~a---~~~~p~VL~IDEiD~l~~~~~ 347 (522)
+.|+++. +..+|..+ +...|+||||||||.++..+.
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 9999987 89999998 778899999999999986653
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=2.3e-20 Score=187.51 Aligned_cols=251 Identities=21% Similarity=0.254 Sum_probs=166.5
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhc--cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh-hhhchh
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQG--IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS-KWRGES 315 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~--~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~-~~~g~~ 315 (522)
+|+|++++++.|..++..++....+... ....++++||+||||||||++|+++|+.++.+++.+++..+.. .|.|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4999999999999888654322222211 1234579999999999999999999999999999999998765 444432
Q ss_pred -HHHHHHHHHHH-----HhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee-
Q 009911 316 -ERMVRCLFDLA-----RAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA- 388 (522)
Q Consensus 316 -e~~l~~~f~~a-----~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat- 388 (522)
...+..++..+ ....++||||||+|.+...............+++.|+..+++..............++||++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34456655422 11236899999999998665433333344456788888888542100000001123677777
Q ss_pred ---cCCCCCccHHHHhhcccccccCCCCHHHHHHHHHH----HH-------ccCCC---CCcccHHHHHHHc-------C
Q 009911 389 ---TNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKI----NL-------KTVEV---SKDVDIDEVARRT-------D 444 (522)
Q Consensus 389 ---tn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~----~l-------~~~~l---~~~~dl~~LA~~t-------~ 444 (522)
++.+..++++|++||+..+.|+.|+.+++..|++. ++ ..... .++..+..|+..+ +
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 45778899999999998899999999999999983 11 11111 1223366677766 2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 445 GYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 445 Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
+...+.+.++|+.+...+..+... ..-....|+.+|+.+++....
T Consensus 256 ~g~~R~l~~~l~~~~~~~~~~~~~------------~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKISFSASD------------MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHHHHGGG------------CTTCEEEECHHHHHHHTCSSS
T ss_pred ccCcHHHHHHHHHHHHhhhcCCcc------------ccCCEEEEeeHHHHHHHHhhh
Confidence 457888888888776554432210 001123599999999988654
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.83 E-value=3.5e-19 Score=181.94 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=151.1
Q ss_pred hhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
..+.+++.+.+|++|+|.+.+++.|..++.... ....+..+|||+||||||||++|+++|+.++.+|+.+++.
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~-------~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAK-------KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHH-------HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHH-------hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 456678888899999999999999998886421 1123446899999999999999999999999999999987
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC--------CCCC
Q 009911 306 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG--------TNED 377 (522)
Q Consensus 306 ~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~--------~~~~ 377 (522)
.+.. ...+..++.. ...+++|||||||.+. ...+..|+..++.....- ....
T Consensus 90 ~~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3pfi_A 90 MIEK------SGDLAAILTN--LSEGDILFIDEIHRLS------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIK 149 (338)
T ss_dssp GCCS------HHHHHHHHHT--CCTTCEEEEETGGGCC------------HHHHHHHHHHHHTSCC---------CCCCC
T ss_pred hccc------hhHHHHHHHh--ccCCCEEEEechhhcC------------HHHHHHHHHHHHhccchhhcccCcccccee
Confidence 6531 1122333322 2357899999998874 345667777776543110 0000
Q ss_pred CCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 378 GSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 378 ~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
.....+++|++||....++++|++||+..+.|+.|+.+++..+++..+...... .+..+..|+..+.| ..+.+.++++
T Consensus 150 ~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~ 228 (338)
T 3pfi_A 150 IDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLK 228 (338)
T ss_dssp CCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHH
T ss_pred cCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHH
Confidence 111248899999999999999999998899999999999999999888765432 23346778887776 5678888888
Q ss_pred HHHHHHHH
Q 009911 457 DASLNGMR 464 (522)
Q Consensus 457 ~A~~~a~~ 464 (522)
.+...+..
T Consensus 229 ~~~~~a~~ 236 (338)
T 3pfi_A 229 RVRDFADV 236 (338)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77655543
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=6.1e-19 Score=185.72 Aligned_cols=259 Identities=21% Similarity=0.287 Sum_probs=175.4
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccC--CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh-hhhch-
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIR--RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS-KWRGE- 314 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~--~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~-~~~g~- 314 (522)
+|+|++++|+.|..++..+.....++...+ .+++++||+||||||||++|+++|+.++.+|+.++++.+.. .|.|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 599999999999999988766665555443 35679999999999999999999999999999999998877 57874
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 009911 315 SERMVRCLFDLAR------------------------------------------------------------------- 327 (522)
Q Consensus 315 ~e~~l~~~f~~a~------------------------------------------------------------------- 327 (522)
.+..++.+|..+.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 5666666655441
Q ss_pred ------------------------------------------------------------------------hhCCcEEE
Q 009911 328 ------------------------------------------------------------------------AYAPSTIF 335 (522)
Q Consensus 328 ------------------------------------------------------------------------~~~p~VL~ 335 (522)
....+|||
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 00124899
Q ss_pred EechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeec----CCCCCccHHHHhhcccccccCC
Q 009911 336 IDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAAT----NFPWDIDEALRRRLEKRIYIPL 411 (522)
Q Consensus 336 IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIatt----n~p~~ld~aL~rRf~~~i~i~~ 411 (522)
+||||++.........+-....++..||..|++..........+...|++|+|. +.|.++.+.|+.||+..+.++.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 999999986543223333445688999999997432211111233458899887 3455566899999998899999
Q ss_pred CCHHHHHHHHH---H-----HHc-----cCCCC-CcccHHHHHH-------HcCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 009911 412 PNFESRKELIK---I-----NLK-----TVEVS-KDVDIDEVAR-------RTDGYSGDDLTNVCRDASLNGMRRKIAGK 470 (522)
Q Consensus 412 Pd~~~R~~Ilk---~-----~l~-----~~~l~-~~~dl~~LA~-------~t~Gys~~dI~~lv~~A~~~a~~r~~~~~ 470 (522)
++.++...|+. . +.. ...+. .+..+..|++ .+...-++-|+.++..+....+.+...
T Consensus 336 lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~-- 413 (444)
T 1g41_A 336 LSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD-- 413 (444)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG--
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccc--
Confidence 99999999994 1 111 11111 1223455555 345566677777776665555544321
Q ss_pred ChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHH
Q 009911 471 TRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKH 512 (522)
Q Consensus 471 ~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~ 512 (522)
.......||.+++.+.|. +.+.++++-+|
T Consensus 414 ----------~~~~~~~i~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 414 ----------MNGQTVNIDAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp ----------CTTCEEEECHHHHHHHHT---TTTTCHHHHHH
T ss_pred ----------cCCCeEEEeHHHHHHhcC---ccccCCChhcc
Confidence 111245788888887664 45566777766
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=4e-20 Score=201.22 Aligned_cols=237 Identities=22% Similarity=0.226 Sum_probs=152.6
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh-------
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS------- 309 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~------- 309 (522)
++|++|++++++.+.+++.+...... .+...+||+||||||||+||++||..++.+++.+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 45799999999999888765432221 14568999999999999999999999999999998766432
Q ss_pred --hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-----CCCCCCcce
Q 009911 310 --KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-----TNEDGSRKI 382 (522)
Q Consensus 310 --~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-----~~~~~~~~~ 382 (522)
.|.|.....+...|..+....| ||||||||.+..... ...++.|+..|+...... .........
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~--------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR--------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp ----------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred HHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc--------cCHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 3445555556666776655555 999999999875432 124466777776433211 111112245
Q ss_pred EEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHc-----cCCCC------CcccHHHHHHHcCC-CcHHH
Q 009911 383 VMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLK-----TVEVS------KDVDIDEVARRTDG-YSGDD 450 (522)
Q Consensus 383 VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~-----~~~l~------~~~dl~~LA~~t~G-ys~~d 450 (522)
++||+|||.++.++++|++||. .|.|+.|+.+++..|++.++. ...+. ++..+..|+....+ ...++
T Consensus 225 v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~ 303 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRS 303 (543)
T ss_dssp CEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHH
T ss_pred eEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhH
Confidence 8999999999999999999995 799999999999999998762 22221 12234555554333 34566
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 451 LTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 451 I~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
|.+.+..+...+..+.+. +......|+.+++.++|....
T Consensus 304 L~~~i~~~~~~aa~~~~~------------~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 304 LERQLAAICRKAAKAIVA------------EERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHHHT------------TCCSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHHh------------cCCcceecCHHHHHHHhCCcc
Confidence 666665555444444332 112245789999999987544
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=2.8e-18 Score=173.81 Aligned_cols=206 Identities=19% Similarity=0.210 Sum_probs=145.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS 309 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~ 309 (522)
+++.+.+|++++|.+.+++.|..++... .....+..++||+||||||||++|+++++.++.+|+.+++..+..
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~-------~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAA-------KARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHH-------HHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHH-------HccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 4567789999999999999998877531 111234468999999999999999999999999999998876532
Q ss_pred hhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC----CCCCCC----Ccc
Q 009911 310 KWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT----GTNEDG----SRK 381 (522)
Q Consensus 310 ~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~----~~~~~~----~~~ 381 (522)
...+...|.. ....+++|||||||.+.. ..+..|+..++..... ...... ...
T Consensus 77 ------~~~l~~~l~~-~~~~~~~l~lDEi~~l~~------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 ------PGDLAAILAN-SLEEGDILFIDEIHRLSR------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ------HHHHHHHHTT-TCCTTCEEEETTTTSCCH------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ------hHHHHHHHHH-hccCCCEEEEECCccccc------------chHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1112222221 013578999999987642 2345666666643210 000000 012
Q ss_pred eEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 382 IVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 382 ~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
.+.+|++||.+..++++|++||...+.++.|+.+++..+++..+...... ++..+..|+..+.|+ ++.+.++++.+..
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRD 216 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHH
Confidence 37899999999999999999998899999999999999999888654332 234477888998774 5778888876654
Q ss_pred HH
Q 009911 461 NG 462 (522)
Q Consensus 461 ~a 462 (522)
.+
T Consensus 217 ~a 218 (324)
T 1hqc_A 217 FA 218 (324)
T ss_dssp TS
T ss_pred HH
Confidence 33
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=2.5e-18 Score=170.51 Aligned_cols=206 Identities=19% Similarity=0.217 Sum_probs=137.1
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh-hhhhchhH
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA-SKWRGESE 316 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~-~~~~g~~e 316 (522)
..++|.....+.+....... ...+......+++++||+||||||||++|+++|+.++.+|+.+++.+.. +...+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l--~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL--VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH--HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH--HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 35777766655555532110 0011111234567999999999999999999999999999999876532 21122233
Q ss_pred HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc
Q 009911 317 RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID 396 (522)
Q Consensus 317 ~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld 396 (522)
..++.+|..+....++||||||||.++..+... ......++..|+..+++.... ...++||+|||.++.++
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~l~~L~~~~~~~~~~-------~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQALLVLLKKAPPQ-------GRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--TBCCHHHHHHHHHHTTCCCST-------TCEEEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--hhHHHHHHHHHHHHhcCccCC-------CCCEEEEEecCChhhcc
Confidence 567788888877778999999999997654322 233456666676666654322 24588999999998888
Q ss_pred H-HHHhhcccccccCCCCH-HHHHHHHHHHHccCCCCCcccHHHHHHHcCCC----cHHHHHHHHHHH
Q 009911 397 E-ALRRRLEKRIYIPLPNF-ESRKELIKINLKTVEVSKDVDIDEVARRTDGY----SGDDLTNVCRDA 458 (522)
Q Consensus 397 ~-aL~rRf~~~i~i~~Pd~-~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gy----s~~dI~~lv~~A 458 (522)
+ .+++||...|.+|.++. ++...++.. ...+ .+.++..|+..+.|| ..+++.++++.|
T Consensus 182 ~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 182 EMEMLNAFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp HTTCTTTSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred hhhhhcccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 8 67889988888876654 444444433 3233 355688999999998 455555555544
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=7.5e-18 Score=174.24 Aligned_cols=227 Identities=22% Similarity=0.284 Sum_probs=154.3
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhh---hccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhh-hhhchh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYF---QGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLAS-KWRGES 315 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~---~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~-~~~g~~ 315 (522)
|+|++.+++.|..++.......... .....+..+|||+||||||||++|++||+.++.+|+.++++.+.. .|.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 7999999999999885432211111 112235679999999999999999999999999999999998874 367765
Q ss_pred -HHHHHHHHHHH----HhhCCcEEEEechhhhhhccCCC--CchhhHHHHHHHHHHHhhhcCCC----CC-------CCC
Q 009911 316 -ERMVRCLFDLA----RAYAPSTIFIDEIDSLCNARGAS--GEHESSRRVKSELLVQVDGVNNT----GT-------NED 377 (522)
Q Consensus 316 -e~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~~~~~--~~~~~~~~~~~~Ll~~ld~~~~~----~~-------~~~ 377 (522)
...+..+|..+ ....++||||||||.+...+... +.......+++.|+..|++.... .. ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55667777665 33457899999999998765332 12233445899999999953210 00 001
Q ss_pred CCcceEEEEeecCCC----------CC-----------------------------------ccHHHHhhcccccccCCC
Q 009911 378 GSRKIVMVLAATNFP----------WD-----------------------------------IDEALRRRLEKRIYIPLP 412 (522)
Q Consensus 378 ~~~~~VivIattn~p----------~~-----------------------------------ld~aL~rRf~~~i~i~~P 412 (522)
....++++|+++|.. .. +.++|++||+..+.++.|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 122335566665542 11 689999999999999999
Q ss_pred CHHHHHHHHHH----HHc-------cCCCC---CcccHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHHH
Q 009911 413 NFESRKELIKI----NLK-------TVEVS---KDVDIDEVAR--RTDGYSGDDLTNVCRDASLNGMRRK 466 (522)
Q Consensus 413 d~~~R~~Ilk~----~l~-------~~~l~---~~~dl~~LA~--~t~Gys~~dI~~lv~~A~~~a~~r~ 466 (522)
+.+++..|+.. ++. ..... .+..+..|+. ....+..++|.++++.+...++.+.
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 99999998885 221 11111 2223556665 3344667899999998888777655
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=2.9e-17 Score=155.47 Aligned_cols=206 Identities=20% Similarity=0.194 Sum_probs=146.2
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEe
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNV 302 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v 302 (522)
+.+++++..|++++|.+.+++.|..++... ...++||+||+|||||++|+++++.+ ...++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 556788899999999999999999887531 12359999999999999999999986 4567888
Q ss_pred ehhhhhhhhhchhHHHHHHHHHH-HH-----hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCC
Q 009911 303 SSATLASKWRGESERMVRCLFDL-AR-----AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNE 376 (522)
Q Consensus 303 ~~~~l~~~~~g~~e~~l~~~f~~-a~-----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~ 376 (522)
++...... ..+...+.. .. ...+.||||||+|.+.. .....|+..++....
T Consensus 75 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~~~----- 131 (226)
T 2chg_A 75 NASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMYSK----- 131 (226)
T ss_dssp ETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------HHHHHHHHHHHHTTT-----
T ss_pred ccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------HHHHHHHHHHHhcCC-----
Confidence 77543221 112222222 11 14578999999998742 234556666665322
Q ss_pred CCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 009911 377 DGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVC 455 (522)
Q Consensus 377 ~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv 455 (522)
.+.+|++||.+..+++++.+||. .+.++.|+.++...+++..+...... ++..+..|+..+.| ..+.+.+++
T Consensus 132 -----~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l 204 (226)
T 2chg_A 132 -----SCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINAL 204 (226)
T ss_dssp -----TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred -----CCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 26788889999999999999997 89999999999999999877543322 23346778888776 455555555
Q ss_pred HHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHH
Q 009911 456 RDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALT 498 (522)
Q Consensus 456 ~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~ 498 (522)
+.+... ...|+.+|+..++.
T Consensus 205 ~~~~~~-----------------------~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 205 QGAAAI-----------------------GEVVDADTIYQITA 224 (226)
T ss_dssp HHHHHT-----------------------CSCBCHHHHHHHHH
T ss_pred HHHHhc-----------------------CceecHHHHHHHhc
Confidence 544321 13788999988875
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.76 E-value=3.2e-17 Score=173.94 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=137.8
Q ss_pred CCCCccccc-C--cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeeh
Q 009911 233 PGVRWDDVA-G--LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSS 304 (522)
Q Consensus 233 ~~~~~~di~-G--~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~ 304 (522)
+..+|++++ | ...+...+..+...| .. .++++|+||||||||+||++|++.+ +..++.+++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 456899988 5 334455555444332 11 4689999999999999999999998 889999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009911 305 ATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVM 384 (522)
Q Consensus 305 ~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Vi 384 (522)
..+...+.+.........|.......+.||||||+|.+.... ..+..|+..++.+...+. .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~----------~~q~~l~~~l~~l~~~~~--------~i 230 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT----------GVQTELFHTFNELHDSGK--------QI 230 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH----------HHHHHHHHHHHHHHTTTC--------EE
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh----------HHHHHHHHHHHHHHHCCC--------eE
Confidence 887654433322111112222222268999999999886421 234456666555433221 55
Q ss_pred EEeecCCCCC---ccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccC--CCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 385 VLAATNFPWD---IDEALRRRLE--KRIYIPLPNFESRKELIKINLKTV--EVSKDVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 385 vIattn~p~~---ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~--~l~~~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
||++.+.+.. ++++|++||. ..+.++.|+.++|..|++..+... .+.+ ..+..|+..+.| +.+++.++++.
T Consensus 231 Iitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~-e~l~~la~~~~g-n~R~l~~~L~~ 308 (440)
T 2z4s_A 231 VICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE-EVLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_dssp EEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHCCS-CHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhcCC-CHHHHHHHHHH
Confidence 5655555554 7899999996 789999999999999999887643 3333 347889999886 78899999988
Q ss_pred HHHHHH
Q 009911 458 ASLNGM 463 (522)
Q Consensus 458 A~~~a~ 463 (522)
+...+.
T Consensus 309 ~~~~a~ 314 (440)
T 2z4s_A 309 LLVYKE 314 (440)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.76 E-value=2.5e-17 Score=167.27 Aligned_cols=191 Identities=16% Similarity=0.105 Sum_probs=137.8
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.|.++|.+.+|++++|.+++++.|..++.. +..++.+|++||||||||++|+++|+.++.+++++++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 467788899999999999999999988862 233457888899999999999999999999999999876
Q ss_pred hhhhhhchhHHHHHHHHHHHHhh-----CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcc
Q 009911 307 LASKWRGESERMVRCLFDLARAY-----APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRK 381 (522)
Q Consensus 307 l~~~~~g~~e~~l~~~f~~a~~~-----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~ 381 (522)
.. ...++..+...... .+.||||||+|.+.. ...++.|+..++....
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~~~---------- 135 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAYSS---------- 135 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHHGG----------
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhCCC----------
Confidence 32 22344433332222 468999999998751 2345677777776432
Q ss_pred eEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHc-------cCCCC-Cc-ccHHHHHHHcCCCcHHHHH
Q 009911 382 IVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLK-------TVEVS-KD-VDIDEVARRTDGYSGDDLT 452 (522)
Q Consensus 382 ~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~-------~~~l~-~~-~dl~~LA~~t~Gys~~dI~ 452 (522)
.+.||++||.+..++++|++||. .+.|+.|+.+++..|++..+. ...+. ++ ..+..|+..+.|- .+++.
T Consensus 136 ~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd-~R~a~ 213 (324)
T 3u61_B 136 NCSIIITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD-FRKTI 213 (324)
T ss_dssp GCEEEEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC-TTHHH
T ss_pred CcEEEEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC-HHHHH
Confidence 26788899999999999999995 799999999998776654432 11221 23 4477888887763 33344
Q ss_pred HHHHHH
Q 009911 453 NVCRDA 458 (522)
Q Consensus 453 ~lv~~A 458 (522)
+.++.+
T Consensus 214 ~~L~~~ 219 (324)
T 3u61_B 214 GELDSY 219 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=5.1e-18 Score=180.21 Aligned_cols=215 Identities=18% Similarity=0.231 Sum_probs=147.3
Q ss_pred hhhccCCCCCcccccCcHHHH---HHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 227 DVLETSPGVRWDDVAGLTEAK---RLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk---~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.+.+++.+.+|++++|++.++ +.|...+... . .+++||+||||||||++|++||+.++.+|+.++
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-----------~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAG-----------H-LHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-----------C-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC-----------C-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 345567788999999999998 6777766531 1 158999999999999999999999999999998
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 009911 304 SATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGS 379 (522)
Q Consensus 304 ~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~ 379 (522)
+.... ...++.++..+. ...+.||||||||.+... .+..|+..++.-
T Consensus 83 a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~~---------- 133 (447)
T 3pvs_A 83 AVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIEDG---------- 133 (447)
T ss_dssp TTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHTT----------
T ss_pred eccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhcC----------
Confidence 75422 222445554444 345789999999987432 345677777741
Q ss_pred cceEEEEeecCCC-CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC-------C-CCcccHHHHHHHcCCCcHHH
Q 009911 380 RKIVMVLAATNFP-WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE-------V-SKDVDIDEVARRTDGYSGDD 450 (522)
Q Consensus 380 ~~~VivIattn~p-~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~-------l-~~~~dl~~LA~~t~Gys~~d 450 (522)
..++|.+||.++ ..++++|++||. .+.|+.|+.+++..+++..+.... + .++..+..|+..+.| ..+.
T Consensus 134 -~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~ 210 (447)
T 3pvs_A 134 -TITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARR 210 (447)
T ss_dssp -SCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHH
T ss_pred -ceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHH
Confidence 113444444344 689999999996 788999999999999999886521 1 123347788888776 5667
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 451 LTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 451 I~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
+.++++.+...+... ......||.+++.+++....
T Consensus 211 lln~Le~a~~~a~~~----------------~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 211 ALNTLEMMADMAEVD----------------DSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHHHHSCBC----------------TTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhcccc----------------cCCCCccCHHHHHHHHhhhh
Confidence 777777665433111 00123577777777776554
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=1.6e-16 Score=161.57 Aligned_cols=198 Identities=20% Similarity=0.263 Sum_probs=136.2
Q ss_pred CCCCCccccc-C--cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 232 SPGVRWDDVA-G--LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 232 ~~~~~~~di~-G--~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
.+..+|++++ | ...+...+..++..+ ....++++|+||||||||+||+++++.+ +.+++.+++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3567899997 4 455566666655432 1234689999999999999999999999 8999999998
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009911 306 TLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMV 385 (522)
Q Consensus 306 ~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~Viv 385 (522)
.+...+.+.........|.... ..+.||||||+|.+..+. ..+..|+..++.....+ ..+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~----------~~~~~l~~~l~~~~~~~--------~~ii 135 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE----------RTQIEFFHIFNTLYLLE--------KQII 135 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH----------HHHHHHHHHHHHHHHTT--------CEEE
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh----------HHHHHHHHHHHHHHHCC--------CeEE
Confidence 8766554433222122222222 347899999999886321 22344555554433222 1567
Q ss_pred EeecCCCC---CccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 009911 386 LAATNFPW---DIDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDAS 459 (522)
Q Consensus 386 Iattn~p~---~ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~ 459 (522)
+++++.+. .++++|++||. ..+.++. +.+++..|++..+....+. ++..+..|+..+ | ..+++.+++..+.
T Consensus 136 i~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~ 212 (324)
T 1l8q_A 136 LASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIK 212 (324)
T ss_dssp EEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHH
T ss_pred EEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHH
Confidence 77777665 68899999996 5788998 9999999999988654332 233478899998 5 6778888887765
Q ss_pred HH
Q 009911 460 LN 461 (522)
Q Consensus 460 ~~ 461 (522)
..
T Consensus 213 ~~ 214 (324)
T 1l8q_A 213 LK 214 (324)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 46
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.75 E-value=2.2e-17 Score=158.11 Aligned_cols=209 Identities=20% Similarity=0.226 Sum_probs=148.4
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT-------- 298 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~-------- 298 (522)
.+.+++.+..|++++|.+.+++.|...+.. ...++.++|+||+|+|||++++++++.++..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 356678888999999999999999988753 1223479999999999999999999988542
Q ss_pred ----------------EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCCchhhHHHH
Q 009911 299 ----------------FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASGEHESSRRV 358 (522)
Q Consensus 299 ----------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~ 358 (522)
++.++... ......+..++..+. ...+.+|||||+|.+. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~ 142 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHS 142 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHH
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHH
Confidence 22222211 011223444444332 2246899999998763 234
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHH
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDID 437 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~ 437 (522)
+..|+..++... ..+.+|++|+.+..+++.+++|+ ..+.++.++.++..++++..+...... ++..+.
T Consensus 143 ~~~l~~~l~~~~----------~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~ 211 (250)
T 1njg_A 143 FNALLKTLEEPP----------EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 211 (250)
T ss_dssp HHHHHHHHHSCC----------TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HHHHHHHHhcCC----------CceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 566777776432 22788888888889999999998 589999999999999999887654322 233477
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHH
Q 009911 438 EVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALT 498 (522)
Q Consensus 438 ~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~ 498 (522)
.|+..+.| .++.+.++++.|...+ ...||.+|+.+++.
T Consensus 212 ~l~~~~~G-~~~~~~~~~~~~~~~~----------------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 212 LLARAAEG-SLRDALSLTDQAIASG----------------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTTT----------------------TSSBCHHHHHHHSC
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhcc----------------------CceecHHHHHHHhC
Confidence 89999987 6788888887663110 23788888888763
No 47
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=5.5e-18 Score=156.74 Aligned_cols=169 Identities=23% Similarity=0.375 Sum_probs=122.0
Q ss_pred HhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 009911 224 LERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-------- 295 (522)
Q Consensus 224 ~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-------- 295 (522)
+...+.+.+.+..|++++|.++..+.+.+.+.. ....++||+||||||||++|+++++.+
T Consensus 8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~ 75 (195)
T 1jbk_A 8 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 75 (195)
T ss_dssp HEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG
T ss_pred HhHHHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 344555666678899999999999998887643 223589999999999999999999997
Q ss_pred --CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHH-hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC
Q 009911 296 --GTTFFNVSSATLA--SKWRGESERMVRCLFDLAR-AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN 370 (522)
Q Consensus 296 --g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~ 370 (522)
+.+++.+++..+. ..+.+.....+..++..+. ...+.||||||+|.+........... +...|...++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~----~~~~l~~~~~~-- 149 (195)
T 1jbk_A 76 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD----AGNMLKPALAR-- 149 (195)
T ss_dssp GTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC----CHHHHHHHHHT--
T ss_pred hcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH----HHHHHHHhhcc--
Confidence 7889999988776 3445666667777777554 34577999999999975432211111 12223333321
Q ss_pred CCCCCCCCCcceEEEEeecCCCC-----CccHHHHhhcccccccCCCCHHHHHHHH
Q 009911 371 NTGTNEDGSRKIVMVLAATNFPW-----DIDEALRRRLEKRIYIPLPNFESRKELI 421 (522)
Q Consensus 371 ~~~~~~~~~~~~VivIattn~p~-----~ld~aL~rRf~~~i~i~~Pd~~~R~~Il 421 (522)
..+.+|++||.+. .+++++++||. .+.++.|+.+++.+||
T Consensus 150 ----------~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 ----------GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----------TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred ----------CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 1266788888765 78999999997 6999999999998875
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.74 E-value=8.7e-18 Score=179.74 Aligned_cols=198 Identities=23% Similarity=0.315 Sum_probs=138.6
Q ss_pred HHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh------
Q 009911 222 AMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC------ 295 (522)
Q Consensus 222 e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l------ 295 (522)
+....++.+.+.+..|++|+|.+..++.+...+.. ....++||+||||||||++|+++|..+
T Consensus 164 ~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p 231 (468)
T 3pxg_A 164 DSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVP 231 (468)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSC
T ss_pred HHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence 33445566677788899999999999998887743 233589999999999999999999997
Q ss_pred ----CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC
Q 009911 296 ----GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 296 ----g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
+.+|+.+++. ..|.|..+..+..+|..+....+.||||| . . ....+.|+..|+
T Consensus 232 ~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~----------~~a~~~L~~~L~---- 288 (468)
T 3pxg_A 232 EILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-A----------IDASNILKPSLA---- 288 (468)
T ss_dssp TTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------CCCTT----
T ss_pred hhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-c----------hhHHHHHHHhhc----
Confidence 7889999887 66778877788999999988889999999 0 0 012233333332
Q ss_pred CCCCCCCCcceEEEEeecCCCC-----CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC----C-CCcccHHHHHH
Q 009911 372 TGTNEDGSRKIVMVLAATNFPW-----DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE----V-SKDVDIDEVAR 441 (522)
Q Consensus 372 ~~~~~~~~~~~VivIattn~p~-----~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~----l-~~~~dl~~LA~ 441 (522)
. ..+.||++||.+. .++++|++||. .|.|+.|+.+++..||+.++..+. + ..+..+..++.
T Consensus 289 ~--------g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~ 359 (468)
T 3pxg_A 289 R--------GELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVK 359 (468)
T ss_dssp S--------SSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHH
T ss_pred C--------CCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1 2278899998886 68999999997 599999999999999998776532 1 12334666777
Q ss_pred HcCCCc-----HHHHHHHHHHHHHHHH
Q 009911 442 RTDGYS-----GDDLTNVCRDASLNGM 463 (522)
Q Consensus 442 ~t~Gys-----~~dI~~lv~~A~~~a~ 463 (522)
.+.+|. +.....+++.|.....
T Consensus 360 ~s~~~~~~~~lp~~ai~ll~~a~~~~~ 386 (468)
T 3pxg_A 360 LSDRYISDRFLPDKAIDLIDEAGSKVR 386 (468)
T ss_dssp HHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcCCcHHHHHHHHHHHHHH
Confidence 665554 4477788877765443
No 49
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.73 E-value=2.5e-16 Score=162.57 Aligned_cols=205 Identities=17% Similarity=0.159 Sum_probs=139.0
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeehhh
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSSAT 306 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~~~ 306 (522)
..++++|.+...+.|..++...+ . ...+.+++|+||||||||++++++++.+ +..++.+++..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~------~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPAL------R--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGT------S--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH------c--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 34789999999999988664311 0 1234689999999999999999999998 88899999764
Q ss_pred hhhhh----------------hch-hHHHHHHHHHHHHhh-CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 307 LASKW----------------RGE-SERMVRCLFDLARAY-APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 307 l~~~~----------------~g~-~e~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
....+ .+. ....+..++...... .+.||||||+|.+.... ....++..|+..++.
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQE 161 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhh
Confidence 32110 111 223345555554433 37799999999986431 012333344433332
Q ss_pred cCCCCCCCCCCcceEEEEeecCCC---CCccHHHHhhccc-ccccCCCCHHHHHHHHHHHHcc----CCCCCcccHHHHH
Q 009911 369 VNNTGTNEDGSRKIVMVLAATNFP---WDIDEALRRRLEK-RIYIPLPNFESRKELIKINLKT----VEVSKDVDIDEVA 440 (522)
Q Consensus 369 ~~~~~~~~~~~~~~VivIattn~p---~~ld~aL~rRf~~-~i~i~~Pd~~~R~~Ilk~~l~~----~~l~~~~dl~~LA 440 (522)
... ...+.+|++||.+ +.+++.+++||.. .+.|+.++.+++..|++..+.. ..+. +..+..++
T Consensus 162 ~~~--------~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~ 232 (387)
T 2v1u_A 162 LGD--------RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCA 232 (387)
T ss_dssp C-------------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHH
T ss_pred cCC--------CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHH
Confidence 210 1237888888877 7889999999975 8999999999999999988753 2222 33467788
Q ss_pred HHcC---CCcHHHHHHHHHHHHHHHHHH
Q 009911 441 RRTD---GYSGDDLTNVCRDASLNGMRR 465 (522)
Q Consensus 441 ~~t~---Gys~~dI~~lv~~A~~~a~~r 465 (522)
..+. | .++.+.++|+.|...+...
T Consensus 233 ~~~~~~~G-~~r~~~~~l~~a~~~a~~~ 259 (387)
T 2v1u_A 233 ALAAREHG-DARRALDLLRVAGEIAERR 259 (387)
T ss_dssp HHHHSSSC-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcc-CHHHHHHHHHHHHHHHHHc
Confidence 8777 6 4667778888887666543
No 50
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.73 E-value=1e-15 Score=156.50 Aligned_cols=228 Identities=20% Similarity=0.212 Sum_probs=151.7
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
+...+.+.+|++++|.+.+++.|...+.... ....+..+++|+||||+|||||+++||+.++..+...++..+
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHH-------hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 4566777899999999999888877664210 012334689999999999999999999999998877665443
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC-----CC---CCCCC
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT-----GT---NEDGS 379 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~-----~~---~~~~~ 379 (522)
.. ...+..++.. .....|+||||++.+.. .+.+.|+..++..... .. .....
T Consensus 88 ~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 88 VK------QGDMAAILTS--LERGDVLFIDEIHRLNK------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp CS------HHHHHHHHHH--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCCCC--------------
T ss_pred cC------HHHHHHHHHH--ccCCCEEEEcchhhcCH------------HHHHHHHHHHHhcccceeeccCccccccccc
Confidence 21 1112222221 22467999999998752 1234444444432110 00 00001
Q ss_pred cceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 380 RKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 380 ~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
...+.++++++.+..+++++++||...+.++.++.+++..|++.......+. ++..+..||.++.| +++.+.++++.+
T Consensus 148 l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 1235677799999999999999998889999999999999999877654433 23346789999987 567888888887
Q ss_pred HHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 459 SLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 459 ~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
...+..+. ...||.+++.+|+....
T Consensus 227 ~~~a~~~~------------------~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVK------------------ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHT------------------CSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcC------------------CCCcCHHHHHHHHHHhC
Confidence 66665543 23566666666665543
No 51
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=2.6e-17 Score=178.23 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=130.7
Q ss_pred hhhhccCCCCCcccccCcHHHHHHHHHHHhccC-cChhhhhccC----CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 226 RDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPL-WMPEYFQGIR----RPWKGVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl-~~~~~~~~~~----~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
..|+++|.+.+|+||+|.+.+++.|.+++.... ..+..+...+ .+.+++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 457889999999999999999999999886421 1111222111 24579999999999999999999999999999
Q ss_pred EeehhhhhhhhhchhHH-------HHHHHHHHH-----HhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhh
Q 009911 301 NVSSATLASKWRGESER-------MVRCLFDLA-----RAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDG 368 (522)
Q Consensus 301 ~v~~~~l~~~~~g~~e~-------~l~~~f~~a-----~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~ 368 (522)
.++++.+.......... .+..+|..+ ....+.||||||+|.+.... . ..+..|+..++.
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~----~~l~~L~~~l~~ 177 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----R----GGVGQLAQFCRK 177 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----T----THHHHHHHHHHH
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----H----HHHHHHHHHHHh
Confidence 99998765432111000 011222222 12457899999999986432 1 123455555553
Q ss_pred cCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHcc--CCCCCcccHHHHHHHcCC
Q 009911 369 VNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKT--VEVSKDVDIDEVARRTDG 445 (522)
Q Consensus 369 ~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~--~~l~~~~dl~~LA~~t~G 445 (522)
.. ..+++++++.....+. .+++|+ ..+.|+.|+.+++..++...+.. ..+.+ ..+..|+..+.|
T Consensus 178 ~~----------~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~G 243 (516)
T 1sxj_A 178 TS----------TPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTRG 243 (516)
T ss_dssp CS----------SCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTTT
T ss_pred cC----------CCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC
Confidence 21 1155555444434444 466666 58999999999999999876643 33333 347889988766
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.72 E-value=2.2e-16 Score=152.01 Aligned_cols=205 Identities=13% Similarity=0.082 Sum_probs=141.6
Q ss_pred CCCcccccC---cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhhh
Q 009911 234 GVRWDDVAG---LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSATL 307 (522)
Q Consensus 234 ~~~~~di~G---~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~l 307 (522)
..+|++++| ...+.+.|..++..+ ..+++||+||||||||++|+++++.+. ..++.+++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASGD------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHTC------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 378899997 346777777665431 235899999999999999999999884 77888888776
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceE-EEE
Q 009911 308 ASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIV-MVL 386 (522)
Q Consensus 308 ~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~V-ivI 386 (522)
...+.... . ....+.+|||||+|.+.... .....|+..++....... + +|+
T Consensus 92 ~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~----------~~~~~l~~~l~~~~~~~~--------~~ii~ 143 (242)
T 3bos_A 92 ASISTALL--------E--GLEQFDLICIDDVDAVAGHP----------LWEEAIFDLYNRVAEQKR--------GSLIV 143 (242)
T ss_dssp GGSCGGGG--------T--TGGGSSEEEEETGGGGTTCH----------HHHHHHHHHHHHHHHHCS--------CEEEE
T ss_pred HHHHHHHH--------H--hccCCCEEEEeccccccCCH----------HHHHHHHHHHHHHHHcCC--------CeEEE
Confidence 55432111 1 12347899999999875321 123445555444332211 3 455
Q ss_pred eecCCCC---CccHHHHhhcc--cccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 387 AATNFPW---DIDEALRRRLE--KRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 387 attn~p~---~ld~aL~rRf~--~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
+++..+. .+++.+++||. ..+.++.|+.+++.++++..+....+. ++..+..|+..+.| +.+++.++++.+..
T Consensus 144 ~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 144 SASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDK 222 (242)
T ss_dssp EESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 5544443 45689999995 789999999999999999888654332 23346788888876 78888888888776
Q ss_pred HHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHH
Q 009911 461 NGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALT 498 (522)
Q Consensus 461 ~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~ 498 (522)
.+... ...||.+++.++|.
T Consensus 223 ~a~~~-------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 223 ASMVH-------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHH-------------------TCCCCHHHHHHHHT
T ss_pred HHHHh-------------------CCCCcHHHHHHHhh
Confidence 65432 34699999988874
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.72 E-value=9.8e-17 Score=164.04 Aligned_cols=223 Identities=18% Similarity=0.189 Sum_probs=136.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------c------
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT-------T------ 298 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~-------~------ 298 (522)
.++.+|++|+|.+.+++.+......+ ...++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35678999999999888765554321 1237999999999999999999999863 1
Q ss_pred --------------------EEEeehhhhhhhhhchhHHHHHHHHHHH---------HhhCCcEEEEechhhhhhccCCC
Q 009911 299 --------------------FFNVSSATLASKWRGESERMVRCLFDLA---------RAYAPSTIFIDEIDSLCNARGAS 349 (522)
Q Consensus 299 --------------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a---------~~~~p~VL~IDEiD~l~~~~~~~ 349 (522)
++.+..........|... +...+... ....++||||||||.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 222221111111111100 01111111 11136899999998774
Q ss_pred CchhhHHHHHHHHHHHhhhc----CCCCCCCCCCcceEEEEeecCCC-CCccHHHHhhcccccccCCC-CHHHHHHHHHH
Q 009911 350 GEHESSRRVKSELLVQVDGV----NNTGTNEDGSRKIVMVLAATNFP-WDIDEALRRRLEKRIYIPLP-NFESRKELIKI 423 (522)
Q Consensus 350 ~~~~~~~~~~~~Ll~~ld~~----~~~~~~~~~~~~~VivIattn~p-~~ld~aL~rRf~~~i~i~~P-d~~~R~~Ilk~ 423 (522)
...+..|+..++.- ...+. .......++||+|+|.. ..++++|++||...+.++.| +.+.+..|++.
T Consensus 158 ------~~~~~~Ll~~le~~~~~~~~~g~-~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 ------DHIVDLLLDVAQSGENVVERDGL-SIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ------HHHHHHHHHHHHHSEEEECCTTC-CEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhcCceEEEecce-EEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 23456777777642 11111 00011258899999974 48999999999888999998 67778788866
Q ss_pred HHc-------------------------------cCCCCCcccHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHhhc
Q 009911 424 NLK-------------------------------TVEVSKDVDIDEVARRTDG---YSGDDLTNVCRDASLNGMRRKIAG 469 (522)
Q Consensus 424 ~l~-------------------------------~~~l~~~~dl~~LA~~t~G---ys~~dI~~lv~~A~~~a~~r~~~~ 469 (522)
.+. .+.+. +..+..|+....+ -+.+.+.++++.|...+..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~--- 306 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEG--- 306 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT---
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC---
Confidence 321 11122 2223444444332 256777777777766555433
Q ss_pred CChHHHhhccccccCCCCccHHHHHHHHHhh
Q 009911 470 KTRDEIKNMSKDEISKDPVAMCDFEEALTKV 500 (522)
Q Consensus 470 ~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~ 500 (522)
...|+.+|+.+|+..+
T Consensus 307 ---------------~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 307 ---------------ATAVGRDHLKRVATMA 322 (350)
T ss_dssp ---------------CSBCCHHHHHHHHHHH
T ss_pred ---------------CCcCCHHHHHHHHHHH
Confidence 3458888888887764
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=5.5e-17 Score=168.50 Aligned_cols=248 Identities=20% Similarity=0.257 Sum_probs=150.0
Q ss_pred cccCcHHHHHHHHHHHhccCcChhh------------------hhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEY------------------FQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~------------------~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
+|+|++++++.|..++..++..... +.....+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999887533222211 1123345678999999999999999999999999999
Q ss_pred Eeehhhhh-hhhhchh-HHHHHHHHHHHH----hhCCcEEEEechhhhhhccCCCC--chhhHHHHHHHHHHHhhhcC--
Q 009911 301 NVSSATLA-SKWRGES-ERMVRCLFDLAR----AYAPSTIFIDEIDSLCNARGASG--EHESSRRVKSELLVQVDGVN-- 370 (522)
Q Consensus 301 ~v~~~~l~-~~~~g~~-e~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~~~~~~--~~~~~~~~~~~Ll~~ld~~~-- 370 (522)
.+++..+. ..+.|.. +..+..++..+. ...++||||||||.+...+.... .......+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444443 444555554322 33578999999999876532111 11122347888999998541
Q ss_pred --CCCCCC-------CCCcceEEEEeecCC-----------------------------------------CCCccHHHH
Q 009911 371 --NTGTNE-------DGSRKIVMVLAATNF-----------------------------------------PWDIDEALR 400 (522)
Q Consensus 371 --~~~~~~-------~~~~~~VivIattn~-----------------------------------------p~~ld~aL~ 400 (522)
..+... .....++++|+++|. ...+.+.|.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 100000 001123567777662 113568889
Q ss_pred hhcccccccCCCCHHHHHHHHHH----HHc---------cCCC-CCcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHH
Q 009911 401 RRLEKRIYIPLPNFESRKELIKI----NLK---------TVEV-SKDVDIDEVARRTD--GYSGDDLTNVCRDASLNGMR 464 (522)
Q Consensus 401 rRf~~~i~i~~Pd~~~R~~Ilk~----~l~---------~~~l-~~~~dl~~LA~~t~--Gys~~dI~~lv~~A~~~a~~ 464 (522)
+||+..+.|+.++.++...|+.. ++. ...+ .++..+..|+.... .+..+.|.+++..+...++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99988899999999999998862 111 0111 11223566766633 34678899999888887776
Q ss_pred HHhhcCChHHHhhccccccCCCCccHHHHHHHHH
Q 009911 465 RKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALT 498 (522)
Q Consensus 465 r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~ 498 (522)
+.... ......||.+++..+++
T Consensus 342 ~~~~~------------~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 342 DLPKL------------KGSEVRITKDCVLKQAE 363 (376)
T ss_dssp TGGGG------------TTSEEEECHHHHTTSSC
T ss_pred hccCC------------CCCEEEEeHHHhcCCCC
Confidence 65321 11133577777765443
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=9.1e-17 Score=181.68 Aligned_cols=227 Identities=21% Similarity=0.292 Sum_probs=158.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEe
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----------GTTFFNV 302 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----------g~~~i~v 302 (522)
.+..|++++|.++..+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 345788999999999988887642 234689999999999999999999987 6778888
Q ss_pred ehhhhh--hhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCc
Q 009911 303 SSATLA--SKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSR 380 (522)
Q Consensus 303 ~~~~l~--~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~ 380 (522)
+...+. ..+.|..+..++.+|..+....++||||||+|.+.+...... ......+. +..+...
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~---~~~~~~~~----L~~~l~~-------- 313 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG---GQVDAANL----IKPLLSS-------- 313 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS---CHHHHHHH----HSSCSSS--------
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc---chHHHHHH----HHHHHhC--------
Confidence 887776 457888899999999998877789999999999986543221 11222222 2222222
Q ss_pred ceEEEEeecCCC-----CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccC----CC-CCcccHHHHHHHcCC-----
Q 009911 381 KIVMVLAATNFP-----WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTV----EV-SKDVDIDEVARRTDG----- 445 (522)
Q Consensus 381 ~~VivIattn~p-----~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~----~l-~~~~dl~~LA~~t~G----- 445 (522)
..+.+|++|+.+ ..++++|.+||. .+.|+.|+.+++..||+.++..+ .+ ..+..+..++..+.|
T Consensus 314 ~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~ 392 (758)
T 1r6b_X 314 GKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_dssp CCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTS
T ss_pred CCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccc
Confidence 226788888754 367899999997 79999999999999999776531 11 122335566665554
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhC
Q 009911 446 YSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQ 501 (522)
Q Consensus 446 ys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~ 501 (522)
+.+..+..++++|........ .......|+.+||..++....
T Consensus 393 ~lp~~~i~lld~a~~~~~~~~--------------~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 393 HLPDKAIDVIDEAGARARLMP--------------VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHSS--------------SCCCCCSCCHHHHHHHHHHHS
T ss_pred cCchHHHHHHHHHHHHHhccc--------------ccccCCccCHHHHHHHHHHhc
Confidence 455677788877754332210 001145788889988888754
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=2.3e-16 Score=161.40 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=137.4
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC------CcEE
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG------TTFF 300 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg------~~~i 300 (522)
.|.+++.+.+|++|+|.+++++.|..++... .+ .++||+||||||||++|+++|+.++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-----------NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-----------TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-----------CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 4667788999999999999999998876431 11 3599999999999999999999864 3578
Q ss_pred EeehhhhhhhhhchhHHHHHHHHHHHH----------------hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHH
Q 009911 301 NVSSATLASKWRGESERMVRCLFDLAR----------------AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLV 364 (522)
Q Consensus 301 ~v~~~~l~~~~~g~~e~~l~~~f~~a~----------------~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~ 364 (522)
.+++++..+ ...++..+.... ...+.||||||+|.+.. ..++.|+.
T Consensus 94 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------------~~~~~Ll~ 155 (353)
T 1sxj_D 94 ELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------------DAQSALRR 155 (353)
T ss_dssp EECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------------HHHHHHHH
T ss_pred EEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------------HHHHHHHH
Confidence 887765321 011211111111 11345999999998753 23467777
Q ss_pred HhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCC-CCcccHHHHHHHc
Q 009911 365 QVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEV-SKDVDIDEVARRT 443 (522)
Q Consensus 365 ~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l-~~~~dl~~LA~~t 443 (522)
.|+..... +.+|.++|.+..+.+++++||. .+.++.|+.++...+++..+....+ .++..+..|+..+
T Consensus 156 ~le~~~~~----------~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~ 224 (353)
T 1sxj_D 156 TMETYSGV----------TRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDIS 224 (353)
T ss_dssp HHHHTTTT----------EEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHT
T ss_pred HHHhcCCC----------ceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 77765321 5566788999999999999996 8899999999999999887754332 2334578899988
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 009911 444 DGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 444 ~Gys~~dI~~lv~~A~~~a 462 (522)
.|. .+.+.++++.+...+
T Consensus 225 ~G~-~r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 225 AGD-LRRGITLLQSASKGA 242 (353)
T ss_dssp SSC-HHHHHHHHHHTHHHH
T ss_pred CCC-HHHHHHHHHHHHHhc
Confidence 874 555666666555443
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=9.9e-16 Score=154.65 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=138.4
Q ss_pred hhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcE
Q 009911 225 ERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG-----TTF 299 (522)
Q Consensus 225 ~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg-----~~~ 299 (522)
...|.+++.+.+|++++|.+++++.|..++... .. .++||+||||||||++|+++++.+. ..+
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 345778899999999999999999999877531 12 2699999999999999999999973 347
Q ss_pred EEeehhhhhhhhhchhHHHHHHHHHHH-H-hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCC
Q 009911 300 FNVSSATLASKWRGESERMVRCLFDLA-R-AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNED 377 (522)
Q Consensus 300 i~v~~~~l~~~~~g~~e~~l~~~f~~a-~-~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~ 377 (522)
+.+++++..+. ......+....... . ...+.||||||+|.+.. ..++.|+..++....
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~~~~------ 139 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------DAQQALRRTMEMFSS------ 139 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------HHHHHHHHHHHHTTT------
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------HHHHHHHHHHHhcCC------
Confidence 77877653221 11111121111100 0 13468999999998742 345677777775432
Q ss_pred CCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 378 GSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 378 ~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
.+.+|+++|.+..+.+++++||. .+.|+.++.++...+++..+....+. ++..+..|+..+.| +.+.+.++++
T Consensus 140 ----~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~ 213 (327)
T 1iqp_A 140 ----NVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQ 213 (327)
T ss_dssp ----TEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred ----CCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 26778889999999999999996 88999999999999998877654332 23346778888876 4555556665
Q ss_pred HHH
Q 009911 457 DAS 459 (522)
Q Consensus 457 ~A~ 459 (522)
.+.
T Consensus 214 ~~~ 216 (327)
T 1iqp_A 214 AAA 216 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=6.9e-17 Score=182.65 Aligned_cols=201 Identities=21% Similarity=0.303 Sum_probs=140.6
Q ss_pred HHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----
Q 009911 221 AAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----- 295 (522)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----- 295 (522)
.+.+..++.+.+.+..|++|+|.+..++.|...+.. ....++||+||||||||++|+++|+.+
T Consensus 163 l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~ 230 (758)
T 3pxi_A 163 LDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEV 230 (758)
T ss_dssp HHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 334455666677778899999999999999887743 233589999999999999999999997
Q ss_pred -----CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC
Q 009911 296 -----GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN 370 (522)
Q Consensus 296 -----g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~ 370 (522)
+..++.+++ ..+|.|+.+..++.+|..+....++||||| . .....+.|+..|+
T Consensus 231 p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~-----------~~~~~~~L~~~l~--- 288 (758)
T 3pxi_A 231 PEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-----------AIDASNILKPSLA--- 288 (758)
T ss_dssp CTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------CCCTT---
T ss_pred ChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C-----------chhHHHHHHHHHh---
Confidence 888998888 556788888889999999998889999999 0 0112233333332
Q ss_pred CCCCCCCCCcceEEEEeecCCCC-----CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-----CcccHHHHH
Q 009911 371 NTGTNEDGSRKIVMVLAATNFPW-----DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-----KDVDIDEVA 440 (522)
Q Consensus 371 ~~~~~~~~~~~~VivIattn~p~-----~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-----~~~dl~~LA 440 (522)
. ..+.+|++||... .++++|+|||. .|.|+.|+.+++..||+.++..+... .+..+..++
T Consensus 289 -~--------~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~ 358 (758)
T 3pxi_A 289 -R--------GELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAV 358 (758)
T ss_dssp -S--------SSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHH
T ss_pred -c--------CCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 2278889998887 79999999995 69999999999999999877653222 222345555
Q ss_pred HHc-----CCCcHHHHHHHHHHHHHHHHHH
Q 009911 441 RRT-----DGYSGDDLTNVCRDASLNGMRR 465 (522)
Q Consensus 441 ~~t-----~Gys~~dI~~lv~~A~~~a~~r 465 (522)
..+ +++.+.....++..|......+
T Consensus 359 ~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 359 KLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 543 3566777888888776554433
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.68 E-value=3.9e-16 Score=157.07 Aligned_cols=212 Identities=22% Similarity=0.266 Sum_probs=144.5
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh-----
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK----- 310 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~----- 310 (522)
+|+|.+.+++.|...+..... ......+|..++||+||||||||++|+++|+.+ +.+++.+++..+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH---TCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhc---CCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHH
Confidence 489999999999888754210 001123444689999999999999999999998 557999998765432
Q ss_pred hhc-------hhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCC-CCCCCcce
Q 009911 311 WRG-------ESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGT-NEDGSRKI 382 (522)
Q Consensus 311 ~~g-------~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~-~~~~~~~~ 382 (522)
+.| ... ...+.........+||||||+|.+. ..+++.|+..|+....... ........
T Consensus 95 l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 95 LIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAH------------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred hcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcC------------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 111 100 0122233333445899999998873 3466788888875432210 00011124
Q ss_pred EEEEeecCC--------------------------CCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC-------
Q 009911 383 VMVLAATNF--------------------------PWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE------- 429 (522)
Q Consensus 383 VivIattn~--------------------------p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~------- 429 (522)
++||+|||. ...++++|++||+..+.++.|+.+++..|++.++....
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 779999998 34677899999998999999999999999998775421
Q ss_pred CC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHh
Q 009911 430 VS---KDVDIDEVARRTD--GYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 430 l~---~~~dl~~LA~~t~--Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
.. .+..+..|+...- .+..++|.++|+.+...++.+.+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 11 2233667777654 57889999999999887777664
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=1.1e-16 Score=147.70 Aligned_cols=157 Identities=22% Similarity=0.349 Sum_probs=112.7
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCc
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----------GTT 298 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----------g~~ 298 (522)
.+++.+..|++++|.+...+.+.+.+.. ....++||+||+|||||++|+++++.+ +.+
T Consensus 13 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~ 80 (187)
T 2p65_A 13 TALARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRK 80 (187)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCE
T ss_pred HHHHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCe
Confidence 3344466789999999998888887642 223589999999999999999999997 788
Q ss_pred EEEeehhhhhh--hhhchhHHHHHHHHHHHHhh-CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCC
Q 009911 299 FFNVSSATLAS--KWRGESERMVRCLFDLARAY-APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTN 375 (522)
Q Consensus 299 ~i~v~~~~l~~--~~~g~~e~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~ 375 (522)
++.+++..+.. .+.+.....+..++..+... .+.||||||+|.+...+..... ...+.+.|...++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~~l~~~~~~------- 150 (187)
T 2p65_A 81 LVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG---ALDAGNILKPMLAR------- 150 (187)
T ss_dssp EEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT---SCCTHHHHHHHHHT-------
T ss_pred EEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc---chHHHHHHHHHHhc-------
Confidence 99998887653 24555666677777776655 6789999999999754321111 11222333333332
Q ss_pred CCCCcceEEEEeecCCCC-----CccHHHHhhcccccccCCCC
Q 009911 376 EDGSRKIVMVLAATNFPW-----DIDEALRRRLEKRIYIPLPN 413 (522)
Q Consensus 376 ~~~~~~~VivIattn~p~-----~ld~aL~rRf~~~i~i~~Pd 413 (522)
..+++|+++|.+. .+++++++||. .+.++.|+
T Consensus 151 -----~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 -----GELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp -----TCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred -----CCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 1267888888764 68999999997 59999885
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=1.8e-15 Score=156.41 Aligned_cols=192 Identities=17% Similarity=0.158 Sum_probs=131.3
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----------CCcEEEeehhh
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----------GTTFFNVSSAT 306 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----------g~~~i~v~~~~ 306 (522)
++++|.+..++.|..++...+ . ...+++++|+||||||||++|+++++.+ +..++.+++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~------~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV------K--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH------T--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH------c--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 679999999999988774321 1 1234589999999999999999999998 89999999876
Q ss_pred hh-hh----------h-------hch-hHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHH-HHHHHHHh
Q 009911 307 LA-SK----------W-------RGE-SERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRV-KSELLVQV 366 (522)
Q Consensus 307 l~-~~----------~-------~g~-~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~-~~~Ll~~l 366 (522)
.. .. + .+. ....+..++..+....+ ||||||+|.+..... ..+ +..|+.
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~--------~~~~l~~l~~-- 160 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG--------GDIVLYQLLR-- 160 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT--------SHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC--------CceeHHHHhc--
Confidence 43 11 0 011 12334445544444333 999999999864321 011 222321
Q ss_pred hhcCCCCCCCCCCcceEEEEeecCCC---CCccHHHHhhcccccccCCCCHHHHHHHHHHHHcc----CCCCCcccHHHH
Q 009911 367 DGVNNTGTNEDGSRKIVMVLAATNFP---WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKT----VEVSKDVDIDEV 439 (522)
Q Consensus 367 d~~~~~~~~~~~~~~~VivIattn~p---~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~----~~l~~~~dl~~L 439 (522)
.. ..+.||++||.+ ..+++.+++||...+.|+.++.++...|++..+.. ..+ ++..+..+
T Consensus 161 --~~----------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i 227 (384)
T 2qby_B 161 --SD----------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYI 227 (384)
T ss_dssp --SS----------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHH
T ss_pred --CC----------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHH
Confidence 11 127888888877 67899999998779999999999999999987753 222 23346777
Q ss_pred HHHcC---CCcHHHHHHHHHHHHHHH
Q 009911 440 ARRTD---GYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 440 A~~t~---Gys~~dI~~lv~~A~~~a 462 (522)
+..+. | ..+.+.++|+.|...+
T Consensus 228 ~~~~~~~~G-~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 228 AAISAKEHG-DARKAVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhccC-CHHHHHHHHHHHHHHh
Confidence 87776 4 3455666777665443
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.67 E-value=9.8e-16 Score=154.12 Aligned_cols=194 Identities=20% Similarity=0.197 Sum_probs=135.0
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEE
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFN 301 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~ 301 (522)
.|.+++.+..|++++|.+.+++.|...+.. +.. .++||+||+|||||++|+++++.+ +..++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 467889999999999999999998876642 122 259999999999999999999997 346788
Q ss_pred eehhhhhhhhhchhHHHHHHHHHHHH--hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 009911 302 VSSATLASKWRGESERMVRCLFDLAR--AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGS 379 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~l~~~f~~a~--~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~ 379 (522)
+++....+ .......+..+..... ...+.||||||+|.+.. ...+.|+..++...
T Consensus 74 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~~~--------- 130 (319)
T 2chq_A 74 MNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMYS--------- 130 (319)
T ss_dssp EETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSSSS---------
T ss_pred EeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHhcC---------
Confidence 88765432 1111112222210000 13468999999998742 23455665555422
Q ss_pred cceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 380 RKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 380 ~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
..+.+|++||.+..+.+++++||. .+.++.|+.+++..++...+....+. ++..+..|+..+.| ..+.+.++++.+
T Consensus 131 -~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 131 -KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp -SSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred -CCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 237788889999999999999996 89999999999999999887654432 23346778877766 444455555544
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=8e-15 Score=151.59 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=141.3
Q ss_pred CcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCc--eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeehhhhhh
Q 009911 236 RWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWK--GVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSSATLAS 309 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~--~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~~~l~~ 309 (522)
..++++|.+...+.|..++...+ .+ ..+. +++|+||+|||||+++++++..+ +..++.+++.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~------~~--~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWL------RN--PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHH------HS--TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHH------cC--CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 34789999999999888775311 11 1223 89999999999999999999999 67888888654321
Q ss_pred ------hh----------hc-hhHHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC
Q 009911 310 ------KW----------RG-ESERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 310 ------~~----------~g-~~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
.. .+ .....+..+...... ..|.||||||+|.+. ...+..|+..++....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~------------~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA------------PDILSTFIRLGQEADK 154 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC------------HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc------------hHHHHHHHHHHHhCCC
Confidence 00 01 112223333333332 347899999999871 2455666666654322
Q ss_pred CCCCCCCCcceEEEEeecCCC---CCccHHHHhhccc-ccccCCCCHHHHHHHHHHHHccC---CCCCcccHHHHHHHc-
Q 009911 372 TGTNEDGSRKIVMVLAATNFP---WDIDEALRRRLEK-RIYIPLPNFESRKELIKINLKTV---EVSKDVDIDEVARRT- 443 (522)
Q Consensus 372 ~~~~~~~~~~~VivIattn~p---~~ld~aL~rRf~~-~i~i~~Pd~~~R~~Ilk~~l~~~---~l~~~~dl~~LA~~t- 443 (522)
.. ...+.||+++|.+ ..+++.+.+||.. .+.|+.++.++...+++..+... ...++..+..++..+
T Consensus 155 ~~------~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 155 LG------AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp HS------SCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred CC------cCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 00 0137888888887 6788999999865 79999999999999999877541 122334577888888
Q ss_pred --------CCCcHHHHHHHHHHHHHHHHHHHhhcCCh
Q 009911 444 --------DGYSGDDLTNVCRDASLNGMRRKIAGKTR 472 (522)
Q Consensus 444 --------~Gys~~dI~~lv~~A~~~a~~r~~~~~~~ 472 (522)
.| .++.+.++|+.|...+..+....++.
T Consensus 229 ~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~ 264 (389)
T 1fnn_A 229 AQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAP 264 (389)
T ss_dssp BSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred hcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 45 56778888888887776554333333
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.67 E-value=3e-15 Score=154.19 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=138.7
Q ss_pred hhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 009911 228 VLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--------- 298 (522)
Q Consensus 228 ~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--------- 298 (522)
+.+++.+..|++++|.+.+++.|...+.. +..++.+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 45678889999999999999999987743 2233579999999999999999999998642
Q ss_pred ---------------EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHH
Q 009911 299 ---------------FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVK 359 (522)
Q Consensus 299 ---------------~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~ 359 (522)
++.++.... . ....++.++..+.. ..+.||||||+|.+. ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~ 136 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAASR----T--KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSF 136 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTCS----C--CSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHHH
T ss_pred ccHHHHHHhccCCCceEEeccccc----C--CHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHHH
Confidence 233332210 0 01124455554432 236799999998874 2345
Q ss_pred HHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHH
Q 009911 360 SELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDE 438 (522)
Q Consensus 360 ~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~ 438 (522)
+.|+..++.... .+++|++|+.+..+.+.+++|| ..+.++.|+.++...+++..+....+. ++..+..
T Consensus 137 ~~Ll~~le~~~~----------~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~ 205 (373)
T 1jr3_A 137 NALLKTLEEPPE----------HVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 205 (373)
T ss_dssp HHHHHHHHSCCS----------SEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHH
T ss_pred HHHHHHHhcCCC----------ceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 677877775322 2778888888888999999999 589999999999999999887654332 2233677
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 009911 439 VARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 439 LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
|+..+.| +.+.+.++++.+..
T Consensus 206 l~~~~~G-~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 206 LARAAEG-SLRDALSLTDQAIA 226 (373)
T ss_dssp HHHHSSS-CHHHHHHHHHHHHH
T ss_pred HHHHCCC-CHHHHHHHHHHHHH
Confidence 8888877 67778888876643
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.66 E-value=8.9e-17 Score=183.96 Aligned_cols=214 Identities=21% Similarity=0.299 Sum_probs=141.4
Q ss_pred HHHHhhhhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----
Q 009911 221 AAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----- 295 (522)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----- 295 (522)
.+.+..++.+.+.+..|++++|.++..+.+.+.+.. ...+++||+||||||||++|+++|+.+
T Consensus 153 l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~ 220 (854)
T 1qvr_A 153 LEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDV 220 (854)
T ss_dssp HHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCC
Confidence 444556666677788999999999999888887642 233589999999999999999999998
Q ss_pred -----CCcEEEeehhhhh--hhhhchhHHHHHHHHHHHHhh-CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhh
Q 009911 296 -----GTTFFNVSSATLA--SKWRGESERMVRCLFDLARAY-APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 296 -----g~~~i~v~~~~l~--~~~~g~~e~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld 367 (522)
+.+++.+++..+. ..+.|+.+..+..+|..+... .++||||||+|.+.+.....+. ..+.+.|...++
T Consensus 221 p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~----~~~~~~L~~~l~ 296 (854)
T 1qvr_A 221 PEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA----VDAGNMLKPALA 296 (854)
T ss_dssp CTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH
T ss_pred chhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch----HHHHHHHHHHHh
Confidence 8899999998886 567888888999999988875 6889999999999755432211 222333433443
Q ss_pred hcCCCCCCCCCCcceEEEEeecCCCC----CccHHHHhhcccccccCCCCHHHHHHHHHHHHccCC----C-CCcccHHH
Q 009911 368 GVNNTGTNEDGSRKIVMVLAATNFPW----DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVE----V-SKDVDIDE 438 (522)
Q Consensus 368 ~~~~~~~~~~~~~~~VivIattn~p~----~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~----l-~~~~dl~~ 438 (522)
. ..+.+|++||.++ .++++|++||. .+.|+.|+.+++..||+.++.... + ..+..+..
T Consensus 297 ~------------~~i~~I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~ 363 (854)
T 1qvr_A 297 R------------GELRLIGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIA 363 (854)
T ss_dssp T------------TCCCEEEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHH
T ss_pred C------------CCeEEEEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHH
Confidence 2 1266788887663 57899999997 599999999999999987765321 1 12233555
Q ss_pred HHHHc-----CCCcHHHHHHHHHHHHHHHH
Q 009911 439 VARRT-----DGYSGDDLTNVCRDASLNGM 463 (522)
Q Consensus 439 LA~~t-----~Gys~~dI~~lv~~A~~~a~ 463 (522)
++..+ +.|.+.....++.+|.....
T Consensus 364 ~~~ls~r~i~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 364 AATLSHRYITERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccChHHHHHHHHHHHHHHH
Confidence 55544 34667777788877765443
No 66
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=6.4e-16 Score=157.39 Aligned_cols=171 Identities=20% Similarity=0.141 Sum_probs=113.0
Q ss_pred hccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh-
Q 009911 229 LETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL- 307 (522)
Q Consensus 229 ~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l- 307 (522)
++++.+..+++|+|.+++++.+..++... .++||+||||||||+||+++|+.++.+++.+++...
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--------------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~ 83 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICTG--------------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDL 83 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHHT--------------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHcC--------------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 33344445678999999999988877542 489999999999999999999999999998886311
Q ss_pred -hhhhhchhH-HHHHHHHHHHHhhC---CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCC-CCCCcc
Q 009911 308 -ASKWRGESE-RMVRCLFDLARAYA---PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTN-EDGSRK 381 (522)
Q Consensus 308 -~~~~~g~~e-~~l~~~f~~a~~~~---p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~-~~~~~~ 381 (522)
.....|... ......|. .... .+||||||||.+. ...++.|+..|+.......+ ......
T Consensus 84 ~~~~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 84 LPSDLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP------------AKVQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp CHHHHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC------------HHHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred ChhhcCCceeecCCCCceE--eccCcccccEEEEEccccCC------------HHHHHHHHHHHhcCceeeCCEEEECCC
Confidence 111111100 00000000 0011 2799999998763 34556777777643210000 000122
Q ss_pred eEEEEeecCCCC-----CccHHHHhhcccccccCCCCHHHHHHHHHHHHcc
Q 009911 382 IVMVLAATNFPW-----DIDEALRRRLEKRIYIPLPNFESRKELIKINLKT 427 (522)
Q Consensus 382 ~VivIattn~p~-----~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~ 427 (522)
.++||+|+|..+ .++++|++||...+.++.|+.+++.+|++..+..
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 367888888443 3899999999878999999999999999987754
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=3.4e-15 Score=150.45 Aligned_cols=191 Identities=16% Similarity=0.115 Sum_probs=136.7
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEE
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFN 301 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~ 301 (522)
.+.+++.+..|++++|.+.+++.|..++.. ...+ ++||+||+|+|||++|+++++.+ +..++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 355678889999999999999999988743 1222 49999999999999999999996 346778
Q ss_pred eehhhhhhhhhchhHHHHHHHHHHHH-------hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCC
Q 009911 302 VSSATLASKWRGESERMVRCLFDLAR-------AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGT 374 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~l~~~f~~a~-------~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~ 374 (522)
+++.+..+ ...++.++.... ...+.||||||+|.+.. ...+.|+..++....
T Consensus 78 ~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~~~--- 136 (323)
T 1sxj_B 78 LNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALRRTMELYSN--- 136 (323)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTHHHHHHTTT---
T ss_pred ecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHHHHHhccCC---
Confidence 87664211 122444444333 22378999999998742 234567777765432
Q ss_pred CCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHH
Q 009911 375 NEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTN 453 (522)
Q Consensus 375 ~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~ 453 (522)
.+.+|++||.+..+.+++++||. .+.|+.|+.++...+++..+....+. ++..+..|+..+.|. .+.+.+
T Consensus 137 -------~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~ 207 (323)
T 1sxj_B 137 -------STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAIN 207 (323)
T ss_dssp -------TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHH
T ss_pred -------CceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHH
Confidence 26777788889999999999996 89999999999999999877543322 233467888888764 444555
Q ss_pred HHHHHH
Q 009911 454 VCRDAS 459 (522)
Q Consensus 454 lv~~A~ 459 (522)
+++.+.
T Consensus 208 ~l~~~~ 213 (323)
T 1sxj_B 208 NLQSTV 213 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=6e-15 Score=151.90 Aligned_cols=205 Identities=19% Similarity=0.208 Sum_probs=138.5
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEeehhhhh
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC------GTTFFNVSSATLA 308 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l------g~~~i~v~~~~l~ 308 (522)
...++++|.+...+.|.+++...+ . ...+..++|+||+|||||+|++++++.+ +..++.+++....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~------~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLY------R--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGG------G--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHH------c--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 345789999999999988664211 0 1334589999999999999999999998 8899999976432
Q ss_pred h------hh----------hch-hHHHHHHHHHHHHhhC-CcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcC
Q 009911 309 S------KW----------RGE-SERMVRCLFDLARAYA-PSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVN 370 (522)
Q Consensus 309 ~------~~----------~g~-~e~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~ 370 (522)
. .. .+. ....+..++....... |.||||||+|.+..... ..++..|+..++...
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEVN 160 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhcC
Confidence 1 10 111 2333455555554443 88999999999874321 124555666665431
Q ss_pred CCCCCCCCCcceEEEEeecCCC---CCccHHHHhhcc-cccccCCCCHHHHHHHHHHHHccCC---CCCcccHHHHHHHc
Q 009911 371 NTGTNEDGSRKIVMVLAATNFP---WDIDEALRRRLE-KRIYIPLPNFESRKELIKINLKTVE---VSKDVDIDEVARRT 443 (522)
Q Consensus 371 ~~~~~~~~~~~~VivIattn~p---~~ld~aL~rRf~-~~i~i~~Pd~~~R~~Ilk~~l~~~~---l~~~~dl~~LA~~t 443 (522)
. ..+.+|++++.+ ..+++.+.+||. ..+.++.++.++..++++..+.... ...+..+..++..+
T Consensus 161 ~---------~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (386)
T 2qby_A 161 K---------SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALA 231 (386)
T ss_dssp C-----------EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHH
T ss_pred C---------CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 1 237788888876 467788999985 4899999999999999998765311 11223356677776
Q ss_pred C---CCcHHHHHHHHHHHHHHHHHH
Q 009911 444 D---GYSGDDLTNVCRDASLNGMRR 465 (522)
Q Consensus 444 ~---Gys~~dI~~lv~~A~~~a~~r 465 (522)
. | .++.+.++|+.|...+...
T Consensus 232 ~~~~G-~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 232 AREHG-DARRALDLLRVSGEIAERM 255 (386)
T ss_dssp HHTTC-CHHHHHHHHHHHHHHHHHT
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHhc
Confidence 6 6 4556667888887666543
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.5e-15 Score=154.10 Aligned_cols=195 Identities=13% Similarity=0.151 Sum_probs=133.2
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT--------- 297 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~--------- 297 (522)
.|+++|.+.+|++++|++.+++.|..++.. .+..++ ++|+||+|+|||++++++|+.+..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~----------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQ----------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTC----------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhh----------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 478899999999999999999988876511 122233 999999999999999999996521
Q ss_pred --------------------cEEEeehhhhhhhhhchhHHHHHHHHHHHH--------------hhCCcEEEEechhhhh
Q 009911 298 --------------------TFFNVSSATLASKWRGESERMVRCLFDLAR--------------AYAPSTIFIDEIDSLC 343 (522)
Q Consensus 298 --------------------~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~--------------~~~p~VL~IDEiD~l~ 343 (522)
.++.++..... ......++..+..+. ...|.||+|||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 12333322211 001112333333321 2256799999998753
Q ss_pred hccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHH
Q 009911 344 NARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKI 423 (522)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~ 423 (522)
....+.|+..++.... .+.||.+|+.+..+.+++++|| ..+.|+.|+.++...+++.
T Consensus 148 ------------~~~~~~L~~~le~~~~----------~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~ 204 (354)
T 1sxj_E 148 ------------KDAQAALRRTMEKYSK----------NIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSD 204 (354)
T ss_dssp ------------HHHHHHHHHHHHHSTT----------TEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhhcC----------CCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHH
Confidence 2345677777776432 1678888899999999999999 6899999999999999998
Q ss_pred HHccCCCC-C-cccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009911 424 NLKTVEVS-K-DVDIDEVARRTDGYSGDDLTNVCRDASL 460 (522)
Q Consensus 424 ~l~~~~l~-~-~~dl~~LA~~t~Gys~~dI~~lv~~A~~ 460 (522)
.+....+. + +..+..|+..+.| +.+++.++++.+..
T Consensus 205 ~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 205 VVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp HHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 77644332 2 3457888888876 55666666665543
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=4.4e-15 Score=167.89 Aligned_cols=211 Identities=18% Similarity=0.222 Sum_probs=145.2
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhch
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGE 314 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~ 314 (522)
++|+|++.+++.|.+.+..... ......+|..++||+||||||||++|+++|+.+ +.+|+.++++.+...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA---GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT---TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 3588999999988888764210 001112344479999999999999999999998 6799999999987765443
Q ss_pred hHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEEEeecCCCC
Q 009911 315 SERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKIVMVLAATNFPW 393 (522)
Q Consensus 315 ~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~VivIattn~p~ 393 (522)
...++...+...++||||||||.+. ..+++.|+..|+.-.... ........+++||+|||.+.
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAH------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSC------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccC------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 1222334445566899999998763 457788888888633211 11112334579999999765
Q ss_pred C------------ccHHHHhhcccccccCCCCHHHHHHHHHHHHccC-------CCC---CcccHHHHHHH--cCCCcHH
Q 009911 394 D------------IDEALRRRLEKRIYIPLPNFESRKELIKINLKTV-------EVS---KDVDIDEVARR--TDGYSGD 449 (522)
Q Consensus 394 ~------------ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~-------~l~---~~~dl~~LA~~--t~Gys~~ 449 (522)
. +.+.|++||+..|.|+.|+.+++..|++.++..+ ... ++..+..|+.. ...+..+
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R 711 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGAR 711 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTT
T ss_pred hhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCCh
Confidence 4 7899999998899999999999999999877542 111 12224556553 2346678
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 009911 450 DLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 450 dI~~lv~~A~~~a~~r~~ 467 (522)
+|.++++.+....+.+.+
T Consensus 712 ~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 712 PLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp THHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999988877776654
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=1.7e-15 Score=162.41 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=137.8
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehh-----hhhhhh
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSA-----TLASKW 311 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~-----~l~~~~ 311 (522)
.|+|.+++++.+..++... .+|||+||||||||+||+++|..++. +|..+.+. ++.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhcC--------------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 3899999999888776542 48999999999999999999998853 45444442 232222
Q ss_pred hchhHHHHHHHHHHHHh-h--CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee
Q 009911 312 RGESERMVRCLFDLARA-Y--APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA 388 (522)
Q Consensus 312 ~g~~e~~l~~~f~~a~~-~--~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat 388 (522)
.+..... ...|..+.. . .++|||||||+.+ ...+++.|+..|+.......+........++|+|
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGC------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 1111100 112221111 1 3679999999754 2456788888887432111100001111245667
Q ss_pred cCCCC---CccHHHHhhcccccccCCCCH-HHHHHHHHHHHc-------------------------cCCCCCcccHHHH
Q 009911 389 TNFPW---DIDEALRRRLEKRIYIPLPNF-ESRKELIKINLK-------------------------TVEVSKDVDIDEV 439 (522)
Q Consensus 389 tn~p~---~ld~aL~rRf~~~i~i~~Pd~-~~R~~Ilk~~l~-------------------------~~~l~~~~dl~~L 439 (522)
||.+. .+.+++++||...+.++.|+. +++..|++.... .+.+.++ -++.+
T Consensus 156 TN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e~i 234 (500)
T 3nbx_X 156 SNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFELI 234 (500)
T ss_dssp ESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHHHH
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHHHH
Confidence 77542 245799999988899999987 778888875432 1111111 13334
Q ss_pred HHHc---------CCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccH
Q 009911 440 ARRT---------DGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAM 490 (522)
Q Consensus 440 A~~t---------~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~ 490 (522)
+... .|.|.+.+..+++.|...|..+....++++.+. +....+.+.....
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~hr~~~~ 293 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLWYDAQSL 293 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSCSSHHHH
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhhcCchHh
Confidence 4333 478999999999988888888777777788777 5555555544333
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=4e-15 Score=168.21 Aligned_cols=212 Identities=17% Similarity=0.212 Sum_probs=145.4
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhh--------
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASK-------- 310 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~-------- 310 (522)
+|+|++++++.|..++..... -.....+|..++||+||||||||++|+++|+.++.+|+.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~---g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHT---TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 377888888887776643110 001112455689999999999999999999999999999999887542
Q ss_pred ----hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEE
Q 009911 311 ----WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKIVMV 385 (522)
Q Consensus 311 ----~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~Viv 385 (522)
|.|..+. ..+....+....+||||||||.+. ..+++.|+..|+.-.... ........+++|
T Consensus 536 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~i 601 (758)
T 1r6b_X 536 APPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_dssp CCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEE
T ss_pred CCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEE
Confidence 3332221 123344445557899999998763 357788888888532111 000111134889
Q ss_pred EeecCCCC-------------------------CccHHHHhhcccccccCCCCHHHHHHHHHHHHccC---------CC-
Q 009911 386 LAATNFPW-------------------------DIDEALRRRLEKRIYIPLPNFESRKELIKINLKTV---------EV- 430 (522)
Q Consensus 386 Iattn~p~-------------------------~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~---------~l- 430 (522)
|+|||... .++++|++||+..|.|+.|+.+++..|++.++... .+
T Consensus 602 I~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 681 (758)
T 1r6b_X 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLE 681 (758)
T ss_dssp EEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred EEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEE
Confidence 99999753 56789999998889999999999999999887532 11
Q ss_pred CCcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHh
Q 009911 431 SKDVDIDEVARRT--DGYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 431 ~~~~dl~~LA~~t--~Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
.++..+..|+... ..|..+.|.++++.+...++.+.+
T Consensus 682 ~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 682 VSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp ECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred eCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 1222356677644 246788999999988877665543
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=1.1e-14 Score=148.98 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=125.5
Q ss_pred hhhccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEE
Q 009911 227 DVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT-----TFFN 301 (522)
Q Consensus 227 ~~~~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~-----~~i~ 301 (522)
.|.++|.+..|++++|++.+++.|...+.. +..+ ++||+||||||||++|+++|+.+.. .++.
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 466778899999999999999999887752 1222 4999999999999999999999732 4667
Q ss_pred eehhhhhhhhhchhHHHHHHHHHHHH-h-----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCC
Q 009911 302 VSSATLASKWRGESERMVRCLFDLAR-A-----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTN 375 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~l~~~f~~a~-~-----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~ 375 (522)
+++++.. + ...++..+.... . ..+.|++|||+|.+.. ..++.|+..++.....
T Consensus 82 ~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~~~~--- 140 (340)
T 1sxj_C 82 LNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------AAQNALRRVIERYTKN--- 140 (340)
T ss_dssp ECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------HHHHHHHHHHHHTTTT---
T ss_pred EcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhcCCCC---
Confidence 7665421 1 112333222221 1 1367999999998742 2456788888765432
Q ss_pred CCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHcc--CCCCCcccHHHHHHHcCC
Q 009911 376 EDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKT--VEVSKDVDIDEVARRTDG 445 (522)
Q Consensus 376 ~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~--~~l~~~~dl~~LA~~t~G 445 (522)
+.+|.+||.+..+.+++++||. .+.++.++.++...++...+.. +.+. +..+..++..+.|
T Consensus 141 -------~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G 203 (340)
T 1sxj_C 141 -------TRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNG 203 (340)
T ss_dssp -------EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTT
T ss_pred -------eEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 5677778999999999999996 7888888998888888877743 3332 2345667776655
No 74
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.3e-14 Score=141.32 Aligned_cols=160 Identities=11% Similarity=0.078 Sum_probs=109.5
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEeehhhhhh
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----------GTTFFNVSSATLAS 309 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----------g~~~i~v~~~~l~~ 309 (522)
|.|-++-.+.|..++.--+ ....+.+++|+||||||||++++++++++ ...++.++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i--------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL--------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 5666666666665553211 12344699999999999999999999999 45788899865432
Q ss_pred ----------hhh------chhHHHHHHHHHHH--HhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC
Q 009911 310 ----------KWR------GESERMVRCLFDLA--RAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN 371 (522)
Q Consensus 310 ----------~~~------g~~e~~l~~~f~~a--~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~ 371 (522)
.+. +.....+..+|... ....+.||||||||.|. . ..++..|+.... .
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~----------q~~L~~l~~~~~-~-- 159 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S----------EKILQYFEKWIS-S-- 159 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C----------THHHHHHHHHHH-C--
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c----------chHHHHHHhccc-c--
Confidence 121 23455677777764 34457899999999986 1 123333333221 1
Q ss_pred CCCCCCCCcceEEEEeecCCCCC----ccHHHHhhcc-cccccCCCCHHHHHHHHHHHHccC
Q 009911 372 TGTNEDGSRKIVMVLAATNFPWD----IDEALRRRLE-KRIYIPLPNFESRKELIKINLKTV 428 (522)
Q Consensus 372 ~~~~~~~~~~~VivIattn~p~~----ld~aL~rRf~-~~i~i~~Pd~~~R~~Ilk~~l~~~ 428 (522)
....++||+++|..+. +++++++||. ..|.|+.++.++...|++..+...
T Consensus 160 -------~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 160 -------KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -------SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -------cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 1123889999988764 4456678986 579999999999999999888653
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.52 E-value=7e-14 Score=160.01 Aligned_cols=214 Identities=22% Similarity=0.264 Sum_probs=146.1
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh---
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK--- 310 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~--- 310 (522)
+++|+|.+.+++.|...+..... -.....+|..++||+||||||||++|++|+..+ +.+|+.++|+.+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~---g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGG---GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 35699999999999888753110 001123444689999999999999999999999 789999999876432
Q ss_pred ---------hhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCc
Q 009911 311 ---------WRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSR 380 (522)
Q Consensus 311 ---------~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~ 380 (522)
|.|..+ ...+....+....+||||||||.+. ..+++.|+..|+.-.... .....+.
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH------------PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC------------HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC------------HHHHHHHHHHhccCceECCCCCEecc
Confidence 112221 1223333444456899999998753 457788998888543211 1111122
Q ss_pred ceEEEEeecCCC--------------------------CCccHHHHhhcccccccCCCCHHHHHHHHHHHHccC------
Q 009911 381 KIVMVLAATNFP--------------------------WDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTV------ 428 (522)
Q Consensus 381 ~~VivIattn~p--------------------------~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~------ 428 (522)
.+++||+|||.. ..+.+.|++||+..+.+.+|+.++...|++.++..+
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999972 245688889998888888899999999999877531
Q ss_pred -CC---CCcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHh
Q 009911 429 -EV---SKDVDIDEVARRTD--GYSGDDLTNVCRDASLNGMRRKI 467 (522)
Q Consensus 429 -~l---~~~~dl~~LA~~t~--Gys~~dI~~lv~~A~~~a~~r~~ 467 (522)
.+ .++..+..|+...- .+..++|.++|+.+...++.+.+
T Consensus 780 ~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred CCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 11 12233566777655 57889999999999888877654
No 76
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.52 E-value=2.7e-13 Score=133.53 Aligned_cols=203 Identities=18% Similarity=0.130 Sum_probs=115.1
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhhhhhhh
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSATLASKW 311 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~l~~~~ 311 (522)
.+|++|+|.+...+.+.+.+.... ....+|||+||||||||++|+++++.+. .+|+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 468899999988888777664321 1235899999999999999999999885 689999998763221
Q ss_pred -----hchhHHHH-------HHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCC
Q 009911 312 -----RGESERMV-------RCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDG 378 (522)
Q Consensus 312 -----~g~~e~~l-------~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~ 378 (522)
.|...... ...|.. ...++|||||||.+.. .++..|+..++...... +....
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM------------MVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH------------HHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH------------HHHHHHHHHHHhCCeecCCCccc
Confidence 11100000 011222 2357999999998742 34567777776432110 00001
Q ss_pred CcceEEEEeecCCC-------CCccHHHHhhcc-cccccCCCCH--HHHHHHHHHHHcc----CCCC--Cccc---HHHH
Q 009911 379 SRKIVMVLAATNFP-------WDIDEALRRRLE-KRIYIPLPNF--ESRKELIKINLKT----VEVS--KDVD---IDEV 439 (522)
Q Consensus 379 ~~~~VivIattn~p-------~~ld~aL~rRf~-~~i~i~~Pd~--~~R~~Ilk~~l~~----~~l~--~~~d---l~~L 439 (522)
....+.||+|||.+ ..+.+.|.+||. ..+.+|.... ++...+++.++.. .... ..++ +..|
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L 217 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL 217 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence 12347788888875 246789999995 3455555443 4555555554432 2211 1233 3444
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 009911 440 ARRTDGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 440 A~~t~Gys~~dI~~lv~~A~~~a 462 (522)
....-....++|.++++.+...+
T Consensus 218 ~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 218 LNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHhC
Confidence 44332235678888887766543
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=6.1e-15 Score=161.94 Aligned_cols=227 Identities=18% Similarity=0.152 Sum_probs=134.5
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhh-ccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee----hhhhhhhh-
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQ-GIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS----SATLASKW- 311 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~-~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~----~~~l~~~~- 311 (522)
..|+|++++|+.|..++... ...... ...+...+|||+||||||||+||+++|+.++..++... +..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 35899999998875433221 000000 11122348999999999999999999999987665432 22222111
Q ss_pred ----hchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCC---CCCCCCCcceEE
Q 009911 312 ----RGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNT---GTNEDGSRKIVM 384 (522)
Q Consensus 312 ----~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~---~~~~~~~~~~Vi 384 (522)
.|.... ....+..| ..+||||||||.+.. ..+..|+..|+.-... .+........+.
T Consensus 373 ~~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l~~------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYL-EAGALVLA---DGGIAVIDEIDKMRD------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSE-EECHHHHH---SSSEECCTTTTCCCS------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eccccccccc-cCCeeEec---CCCcEEeehhhhCCH------------hHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 111000 00112222 348999999987642 3457788888743211 000011123478
Q ss_pred EEeecCCCC-------------CccHHHHhhcc-cccccCCCCHHHHHHHHHHHHccCCC--------------------
Q 009911 385 VLAATNFPW-------------DIDEALRRRLE-KRIYIPLPNFESRKELIKINLKTVEV-------------------- 430 (522)
Q Consensus 385 vIattn~p~-------------~ld~aL~rRf~-~~i~i~~Pd~~~R~~Ilk~~l~~~~l-------------------- 430 (522)
||+|||.++ .++++|++||+ ..+..+.|+.+ ...|.++.+.....
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 999999886 89999999996 45566778888 88888877654221
Q ss_pred ------CCcccHHHHHHH--------------cCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccH
Q 009911 431 ------SKDVDIDEVARR--------------TDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAM 490 (522)
Q Consensus 431 ------~~~~dl~~LA~~--------------t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~ 490 (522)
..+...+.|... .-+.|.+.+..+++.|...|..+. ...|+.
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~------------------~~~V~~ 577 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL------------------KAEVTR 577 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS------------------SCCSSH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC------------------cCCCCH
Confidence 011112233332 235566667777766655544332 567888
Q ss_pred HHHHHHHHhhC
Q 009911 491 CDFEEALTKVQ 501 (522)
Q Consensus 491 ~df~~AL~~~~ 501 (522)
+|+.+|+..++
T Consensus 578 ~dv~~Ai~l~~ 588 (595)
T 3f9v_A 578 EDAERAINIMR 588 (595)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887665
No 78
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.42 E-value=3e-12 Score=130.79 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=118.3
Q ss_pred CcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------
Q 009911 242 GLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT----------------------- 298 (522)
Q Consensus 242 G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~----------------------- 298 (522)
-++++.+.|...+.. ++.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 6 w~~~~~~~l~~~i~~-----------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GGHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred chHHHHHHHHHHHHc-----------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 346666667665542 3445689999999999999999999998642
Q ss_pred -EEEeehhhhhhhhhchhHHHHHHHHHHHHh----hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC
Q 009911 299 -FFNVSSATLASKWRGESERMVRCLFDLARA----YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG 373 (522)
Q Consensus 299 -~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~ 373 (522)
++.+++..- + ....-..++.+++.+.. ....|++|||+|.+.. ...+.|++.++....
T Consensus 75 d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEep~~-- 137 (334)
T 1a5t_A 75 DYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEEPPA-- 137 (334)
T ss_dssp TEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTSCCT--
T ss_pred CEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcCCCC--
Confidence 333332100 0 01122335666665542 2357999999998742 345788888885432
Q ss_pred CCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHH
Q 009911 374 TNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTN 453 (522)
Q Consensus 374 ~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~ 453 (522)
.+++|.+|+.++.+.+++++||. .+.|+.|+.++...+++..+ .+ ++..+..++..+.| +.+.+.+
T Consensus 138 --------~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~ 203 (334)
T 1a5t_A 138 --------ETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALA 203 (334)
T ss_dssp --------TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHH
T ss_pred --------CeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHH
Confidence 27788888889999999999995 79999999999999888765 22 23446778888776 4445544
Q ss_pred HHH
Q 009911 454 VCR 456 (522)
Q Consensus 454 lv~ 456 (522)
+++
T Consensus 204 ~l~ 206 (334)
T 1a5t_A 204 LFQ 206 (334)
T ss_dssp TTS
T ss_pred Hhc
Confidence 443
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.42 E-value=4e-13 Score=120.40 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=87.5
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchh
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGES 315 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~ 315 (522)
+|+|.....+.+.+.+... .....+|||+||||||||++|++|++.. +.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 5788888887777766431 1223589999999999999999999987 67899 998876543
Q ss_pred HHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC---
Q 009911 316 ERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP--- 392 (522)
Q Consensus 316 e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p--- 392 (522)
......|..+ ..++|||||||.+. ...+..|+..|.... ..+.||++||.+
T Consensus 66 -~~~~~~~~~a---~~g~l~ldei~~l~------------~~~q~~Ll~~l~~~~----------~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 66 -PQLNDFIALA---QGGTLVLSHPEHLT------------REQQYHLVQLQSQEH----------RPFRLIGIGDTSLVE 119 (145)
T ss_dssp -SCHHHHHHHH---TTSCEEEECGGGSC------------HHHHHHHHHHHHSSS----------CSSCEEEEESSCHHH
T ss_pred -hhhhcHHHHc---CCcEEEEcChHHCC------------HHHHHHHHHHHhhcC----------CCEEEEEECCcCHHH
Confidence 1133445544 34899999999874 234566777763322 125678888865
Q ss_pred ----CCccHHHHhhcc-cccccCC
Q 009911 393 ----WDIDEALRRRLE-KRIYIPL 411 (522)
Q Consensus 393 ----~~ld~aL~rRf~-~~i~i~~ 411 (522)
..+.+.|..|+. ..|.+|.
T Consensus 120 ~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 120 LAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp HHHHSCCCHHHHHHHHHHEEECCC
T ss_pred HHHcCCCCHHHHHHhcCCEEeCCC
Confidence 245677777764 2344443
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.42 E-value=6.6e-13 Score=133.94 Aligned_cols=200 Identities=21% Similarity=0.191 Sum_probs=119.8
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh---
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW--- 311 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~--- 311 (522)
++|+|.....+.+.+.+.... ....+|||+||||||||++|++|+... +.+|+.++|..+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 358898888888777664321 223589999999999999999999976 5789999987654321
Q ss_pred --hchh----H---HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcc
Q 009911 312 --RGES----E---RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRK 381 (522)
Q Consensus 312 --~g~~----e---~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~ 381 (522)
.|.. . ......|..+. .++|||||||.+.. .++..|+..++...... +.......
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP------------LMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH------------HHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH------------HHHHHHHHHHhcCEeeecCCcccccC
Confidence 1110 0 00112333332 47999999988742 35667777777542110 00111223
Q ss_pred eEEEEeecCCC-------CCccHHHHhhcc-cccccCCCC--HHHHHHHHHHHHccC----CC-CCccc---HHHHHHHc
Q 009911 382 IVMVLAATNFP-------WDIDEALRRRLE-KRIYIPLPN--FESRKELIKINLKTV----EV-SKDVD---IDEVARRT 443 (522)
Q Consensus 382 ~VivIattn~p-------~~ld~aL~rRf~-~~i~i~~Pd--~~~R~~Ilk~~l~~~----~l-~~~~d---l~~LA~~t 443 (522)
.+.||++||.+ ..+.+.|.+||. ..|.+|... .++...|++.++... .. ...++ +..|....
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 47888889875 245678888985 234455444 345555666655431 11 11222 45555554
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 009911 444 DGYSGDDLTNVCRDASLNG 462 (522)
Q Consensus 444 ~Gys~~dI~~lv~~A~~~a 462 (522)
-.-..++|.+++..|...+
T Consensus 217 wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 217 WPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CSSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 2235677888888776543
No 81
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.40 E-value=5.8e-13 Score=109.26 Aligned_cols=86 Identities=20% Similarity=0.408 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHH
Q 009911 413 NFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCD 492 (522)
Q Consensus 413 d~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~d 492 (522)
|.++|.+||+.+++...+..++|+..||..|+||||+||.++|++|.+.++++. ...|+++|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence 567899999999999999899999999999999999999999999999999985 35799999
Q ss_pred HHHHHHhhCCCCCH-HHHHHHHHHH
Q 009911 493 FEEALTKVQRSVSQ-ADIEKHEKWF 516 (522)
Q Consensus 493 f~~AL~~~~~svs~-~~~~~~~~w~ 516 (522)
|..|+.++.+++.. .....|++|.
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 99999999988754 5588888884
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.38 E-value=3.4e-12 Score=140.55 Aligned_cols=240 Identities=23% Similarity=0.296 Sum_probs=142.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEeehhh
Q 009911 230 ETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTF---FNVSSAT 306 (522)
Q Consensus 230 ~~~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~---i~v~~~~ 306 (522)
.++++..|++++|.+.+++.+...+.. ..+++|+||||||||+||++||..+.... +.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 457788899999999999998887753 24899999999999999999999885321 1111100
Q ss_pred hh--hhh-----hchhHHH-------------------------------------------------HHHHHH------
Q 009911 307 LA--SKW-----RGESERM-------------------------------------------------VRCLFD------ 324 (522)
Q Consensus 307 l~--~~~-----~g~~e~~-------------------------------------------------l~~~f~------ 324 (522)
.. ... .+..... ...+|.
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 00 000 0000000 111110
Q ss_pred -----------------HHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCC-----------C
Q 009911 325 -----------------LARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTN-----------E 376 (522)
Q Consensus 325 -----------------~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~-----------~ 376 (522)
......+++|||||++.+. ..++..|+..|+.-...... .
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~ 246 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS------------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRT 246 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC------------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBC
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC------------HHHHHHHHHHHHcCcEEecccccccccccCCC
Confidence 0111245799999998863 34567777777632211000 0
Q ss_pred CCCcceEEEEeecCCC--CCccHHHHhhcc---cccccCC--C-CHHHHHHHHHHHHccCC------CCCcccHHHHHHH
Q 009911 377 DGSRKIVMVLAATNFP--WDIDEALRRRLE---KRIYIPL--P-NFESRKELIKINLKTVE------VSKDVDIDEVARR 442 (522)
Q Consensus 377 ~~~~~~VivIattn~p--~~ld~aL~rRf~---~~i~i~~--P-d~~~R~~Ilk~~l~~~~------l~~~~dl~~LA~~ 442 (522)
......+.||++||.. ..++++|++||. ..+.++. + +.+....+++....... ...+..+..|+..
T Consensus 247 ~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~ 326 (604)
T 3k1j_A 247 EPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVRE 326 (604)
T ss_dssp SCEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHH
T ss_pred CccceeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 1112347899999976 679999999996 3444432 1 34555666554433211 1122234455543
Q ss_pred c---CCC------cHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCCCCCHHHHHHHH
Q 009911 443 T---DGY------SGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHE 513 (522)
Q Consensus 443 t---~Gy------s~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~svs~~~~~~~~ 513 (522)
. .|- +.++|.++++.|...+..+. ...|+.+|+.+|+.... .+.....+.|.
T Consensus 327 ~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~------------------~~~I~~edv~~A~~~~~-~i~~~~~e~~l 387 (604)
T 3k1j_A 327 AQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG------------------KKYVEREDVIEAVKMAK-PLEKQLADWYI 387 (604)
T ss_dssp HHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT------------------CSSBCHHHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HhhhhccccccccCHHHHHHHHHHHHHHHHhcC------------------cccccHHHHHHHHHhhh-hhHHHHHHHHh
Confidence 2 552 68999999998866554432 45799999999996543 45555555554
Q ss_pred H
Q 009911 514 K 514 (522)
Q Consensus 514 ~ 514 (522)
.
T Consensus 388 ~ 388 (604)
T 3k1j_A 388 E 388 (604)
T ss_dssp H
T ss_pred c
Confidence 3
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.38 E-value=4.2e-13 Score=120.07 Aligned_cols=131 Identities=14% Similarity=0.189 Sum_probs=88.2
Q ss_pred cccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHH
Q 009911 239 DVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERM 318 (522)
Q Consensus 239 di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~ 318 (522)
+++|.+...+.+.+.+.... ....+|||+||||||||++|++++...+ +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 58898888888887765311 1235899999999999999999999888 99999998876543
Q ss_pred HHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC-CC---
Q 009911 319 VRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP-WD--- 394 (522)
Q Consensus 319 l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p-~~--- 394 (522)
...+|..+. .++|||||||.+.. ..+..|+..++.... ..+.+|++||.+ ..
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~------------~~q~~Ll~~l~~~~~---------~~~~iI~~tn~~~~~~~~ 122 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR------------NIQTGITFIIGKAER---------CRVRVIASCSYAAGSDGI 122 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH------------HHHHHHHHHHHHHTT---------TTCEEEEEEEECTTTC--
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH------------HHHHHHHHHHHhCCC---------CCEEEEEecCCCHHHHHh
Confidence 344555443 48999999998742 344556666665421 126677777754 33
Q ss_pred -ccHHHHhhcc-cccccCC
Q 009911 395 -IDEALRRRLE-KRIYIPL 411 (522)
Q Consensus 395 -ld~aL~rRf~-~~i~i~~ 411 (522)
+.+.|..||. ..|.+|.
T Consensus 123 ~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 123 SCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp CHHHHHHHHSSSEEEEECC
T ss_pred CccHHHHHHhcCcEEeCCC
Confidence 5566666753 3455554
No 84
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.37 E-value=5.5e-13 Score=108.11 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHH
Q 009911 413 NFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCD 492 (522)
Q Consensus 413 d~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~d 492 (522)
|.++|.+||+.+++...+..++|+..||..|+||||+||.++|++|.+.++++. ..+|+++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence 678999999999999988889999999999999999999999999999888764 46899999
Q ss_pred HHHHHHhhCCCCCHHHHHHHH
Q 009911 493 FEEALTKVQRSVSQADIEKHE 513 (522)
Q Consensus 493 f~~AL~~~~~svs~~~~~~~~ 513 (522)
|..|+.++.|+++ ++++.|+
T Consensus 64 f~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 64 FEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHHHHHHCC-----------
T ss_pred HHHHHHHHccCch-HHHHhcC
Confidence 9999999999999 7787774
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.35 E-value=2.4e-11 Score=126.45 Aligned_cols=246 Identities=12% Similarity=0.051 Sum_probs=146.0
Q ss_pred CcccccCcHHHHHHHHHHH-hccCcChhhhhccCCCCceEEE--EcCCCCcHHHHHHHHHHHh---------CCcEEEee
Q 009911 236 RWDDVAGLTEAKRLLEEAV-VLPLWMPEYFQGIRRPWKGVLM--FGPPGTGKTLLAKAVATEC---------GTTFFNVS 303 (522)
Q Consensus 236 ~~~di~G~~~vk~~L~e~v-~~pl~~~~~~~~~~~~~~~vLL--~GppGtGKT~LAraiA~~l---------g~~~i~v~ 303 (522)
..++++|.+...+.|.+++ .... .+....+..++| +||+|+|||+|++++++.+ +..++.++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~------~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLL------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHH------TSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHh------cCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3467999998888888776 3211 110123358999 9999999999999999887 45677887
Q ss_pred hhhh------hhhh----------hch-hHHHHHHHHHHHH-hhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHH
Q 009911 304 SATL------ASKW----------RGE-SERMVRCLFDLAR-AYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQ 365 (522)
Q Consensus 304 ~~~l------~~~~----------~g~-~e~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ 365 (522)
+... .... .+. ....+..+..... ...|.||+|||+|.+..... .....+..|+..
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~------~~~~~l~~l~~~ 167 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR------IAAEDLYTLLRV 167 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT------SCHHHHHHHHTH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC------cchHHHHHHHHH
Confidence 6321 1110 011 1222333333332 23578999999999863210 012344445545
Q ss_pred hhhcCCCCCCCCCCcceEEEEeecCCCC---Ccc---HHHHhhcccccccCCCCHHHHHHHHHHHHccCC---CCCcccH
Q 009911 366 VDGVNNTGTNEDGSRKIVMVLAATNFPW---DID---EALRRRLEKRIYIPLPNFESRKELIKINLKTVE---VSKDVDI 436 (522)
Q Consensus 366 ld~~~~~~~~~~~~~~~VivIattn~p~---~ld---~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l~~~~---l~~~~dl 436 (522)
+....... ....+.||++++.+. .++ +.+.++|...+.++.++.++..++++..+.... ...+..+
T Consensus 168 ~~~~~~~~-----~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 168 HEEIPSRD-----GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HHHSCCTT-----SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHhcccCC-----CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 54432100 012377887887664 344 667777766699999999999999987654211 1223346
Q ss_pred HHHHHHcC------CCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhc---------cccccCCCCccHHHHHHHHHh
Q 009911 437 DEVARRTD------GYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNM---------SKDEISKDPVAMCDFEEALTK 499 (522)
Q Consensus 437 ~~LA~~t~------Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~---------~~~~~~~~~lt~~df~~AL~~ 499 (522)
..++..+. |. +..+..++..|...+..+....++.+.+... ....+...+.....+..++..
T Consensus 243 ~~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~ 319 (412)
T 1w5s_A 243 ELISDVYGEDKGGDGS-ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAE 319 (412)
T ss_dssp HHHHHHHCGGGTSCCC-HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCc-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHH
Confidence 77888888 74 5678888888776665544333444333211 112223445556677777765
No 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.33 E-value=2.9e-12 Score=102.58 Aligned_cols=75 Identities=29% Similarity=0.587 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCcc
Q 009911 410 PLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVA 489 (522)
Q Consensus 410 ~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt 489 (522)
|+||.++|.+||+.+++...+..++|+..||..|+||||+||.++|++|.+.++++. ...|+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~ 62 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT 62 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence 689999999999999999988889999999999999999999999999999999875 46899
Q ss_pred HHHHHHHHHhhCC
Q 009911 490 MCDFEEALTKVQR 502 (522)
Q Consensus 490 ~~df~~AL~~~~~ 502 (522)
++||..||.++..
T Consensus 63 ~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 63 QEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.3e-11 Score=124.59 Aligned_cols=142 Identities=8% Similarity=0.113 Sum_probs=103.7
Q ss_pred CcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEeehhhhhhhhhchh
Q 009911 242 GLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC------GTTFFNVSSATLASKWRGES 315 (522)
Q Consensus 242 G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l------g~~~i~v~~~~l~~~~~g~~ 315 (522)
|++++.+.|..++.. ++ .+++||+||||+|||++|+++|+.+ ...|+.+++.. . ...
T Consensus 1 g~~~~~~~L~~~i~~-----------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBC
T ss_pred ChHHHHHHHHHHHHC-----------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCC
Confidence 566777777777643 12 3589999999999999999999975 34677777542 0 112
Q ss_pred HHHHHHHHHHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC
Q 009911 316 ERMVRCLFDLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF 391 (522)
Q Consensus 316 e~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~ 391 (522)
-..++.+++.+... ...|+||||+|.|. ....+.|++.|+..... +++|.+|+.
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep~~~----------t~fIl~t~~ 121 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEPPEY----------AVIVLNTRR 121 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSCCTT----------EEEEEEESC
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCCCCC----------eEEEEEECC
Confidence 23366777766532 23699999999874 23468899999865432 677777788
Q ss_pred CCCccHHHHhhcccccccCCCCHHHHHHHHHHHH
Q 009911 392 PWDIDEALRRRLEKRIYIPLPNFESRKELIKINL 425 (522)
Q Consensus 392 p~~ld~aL~rRf~~~i~i~~Pd~~~R~~Ilk~~l 425 (522)
+..+.+++++| .+.|+.|+.++...+++..+
T Consensus 122 ~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 122 WHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999999999 79999999999998888776
No 88
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.30 E-value=2.9e-12 Score=104.53 Aligned_cols=78 Identities=27% Similarity=0.517 Sum_probs=71.4
Q ss_pred ccCCCCHHHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCC
Q 009911 408 YIPLPNFESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDP 487 (522)
Q Consensus 408 ~i~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~ 487 (522)
.-.+||.++|.+||+.+++...+..++|+..||..|+||||+||.++|++|.+.++++. ..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence 34689999999999999999988889999999999999999999999999999999875 468
Q ss_pred ccHHHHHHHHHhhCCC
Q 009911 488 VAMCDFEEALTKVQRS 503 (522)
Q Consensus 488 lt~~df~~AL~~~~~s 503 (522)
|+++||..|+.++.+.
T Consensus 69 I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ECHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccC
Confidence 9999999999998653
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.27 E-value=6.7e-12 Score=149.76 Aligned_cols=151 Identities=20% Similarity=0.207 Sum_probs=105.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcC----------hhhhhc-----------------cCCCCce--EEEEcCCCCc
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWM----------PEYFQG-----------------IRRPWKG--VLMFGPPGTG 283 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~----------~~~~~~-----------------~~~~~~~--vLL~GppGtG 283 (522)
+.++|+|+.|++++|+.+.+.+.+|+.. ++.|+. .+-+++| +|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4589999999999999999999998833 334433 1223445 9999999999
Q ss_pred HHHHHHHHHHHh---CCcEEEeehhh----hh--------hhhhch----hHHHHHHHHHHHHhhCCcEEEEechhhhhh
Q 009911 284 KTLLAKAVATEC---GTTFFNVSSAT----LA--------SKWRGE----SERMVRCLFDLARAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 284 KT~LAraiA~~l---g~~~i~v~~~~----l~--------~~~~g~----~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 344 (522)
||+||+++|.+. |-+.+.++... +. ++|.++ +|+.++.+|..|+...|++||+|++|+|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999887 44444444443 22 456666 899999999999999999999999999998
Q ss_pred cc---CCCC--chhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCC
Q 009911 345 AR---GASG--EHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFP 392 (522)
Q Consensus 345 ~~---~~~~--~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p 392 (522)
.+ +..+ +.....++++++|..|+++....+ |+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~--------v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--------TLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT--------CEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCC--------eEEE-Eeccc
Confidence 73 2222 225667888999999998665433 6666 56653
No 90
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.14 E-value=1e-11 Score=100.37 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHH
Q 009911 415 ESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFE 494 (522)
Q Consensus 415 ~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~ 494 (522)
++|.+||+.+++...+..++|+..||..|+||||+||.++|++|.+.++++. ...|+++||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence 4689999999998888889999999999999999999999999999999875 4579999999
Q ss_pred HHHHhh-CCCCCHHHHHHHH
Q 009911 495 EALTKV-QRSVSQADIEKHE 513 (522)
Q Consensus 495 ~AL~~~-~~svs~~~~~~~~ 513 (522)
.|+.++ .++++.++++.|.
T Consensus 63 ~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 63 EAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp HHHHTTCC------------
T ss_pred HHHHHHHcCcCChHHHHhhC
Confidence 999998 4677877777663
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.14 E-value=2e-10 Score=106.11 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=64.4
Q ss_pred ccCCCCCcccccC----cHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEE
Q 009911 230 ETSPGVRWDDVAG----LTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFN 301 (522)
Q Consensus 230 ~~~~~~~~~di~G----~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~ 301 (522)
+++.+.+|+++++ ...+.+.+.+++.... .....+++|+||+|||||+|++++++.+ |..++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 3566788999986 3445555555443210 0124589999999999999999999887 667777
Q ss_pred eehhhhhhhhhchhHHH-HHHHHHHHHhhCCcEEEEechhh
Q 009911 302 VSSATLASKWRGESERM-VRCLFDLARAYAPSTIFIDEIDS 341 (522)
Q Consensus 302 v~~~~l~~~~~g~~e~~-l~~~f~~a~~~~p~VL~IDEiD~ 341 (522)
++..++...+....... ...++. ....|.+|+|||++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~ 111 (180)
T 3ec2_A 73 FDTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGS 111 (180)
T ss_dssp EEHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSS
T ss_pred EEHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCC
Confidence 88777654432211100 001111 233688999999974
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.06 E-value=1.1e-10 Score=144.99 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=91.3
Q ss_pred ceEEEEcCCCCcHHHHHHH-HHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHH---------------hhCCcEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKA-VATECGTTFFNVSSATLASKWRGESERMVRCLFDLAR---------------AYAPSTIF 335 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAra-iA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~---------------~~~p~VL~ 335 (522)
++|||+||||||||++|+. ++...+..++.++++...+ ...+...++..- ...+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 6999999999999999954 5554467777777665432 122333333220 11236999
Q ss_pred EechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC-----CccHHHHhhcccccccC
Q 009911 336 IDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW-----DIDEALRRRLEKRIYIP 410 (522)
Q Consensus 336 IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~-----~ld~aL~rRf~~~i~i~ 410 (522)
|||||.....+- +. .....++.+++ ...++.............+.+|||+|.|. .|+++|+||| ..++++
T Consensus 1342 iDEinmp~~d~y--g~-q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDKY--GS-QNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCSS--SC-CHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred eccccccccccc--Cc-hhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 999986432221 11 11222222222 11133222111111224489999999994 8999999999 689999
Q ss_pred CCCHHHHHHHHHHHHcc
Q 009911 411 LPNFESRKELIKINLKT 427 (522)
Q Consensus 411 ~Pd~~~R~~Ilk~~l~~ 427 (522)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987754
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.96 E-value=3.5e-09 Score=111.15 Aligned_cols=219 Identities=16% Similarity=0.087 Sum_probs=122.3
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHH-HHHhCCcEEEeeh----hhhhhhhhch
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAV-ATECGTTFFNVSS----ATLASKWRGE 314 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LArai-A~~lg~~~i~v~~----~~l~~~~~g~ 314 (522)
|.|++.+|+.|.-.+...-.. .+..-+|||.|+||| ||+||+++ ++.+....+.... ..+.....+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 899999998887766432100 011127999999999 99999999 6665443332111 1111110000
Q ss_pred hHH-HHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC
Q 009911 315 SER-MVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW 393 (522)
Q Consensus 315 ~e~-~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~ 393 (522)
+.. .-...+..|. ..|+|||||+.+ ....+..|+..|+.-.-.-.+. .-...+.||||+|..+
T Consensus 287 tG~~~~~G~l~LAd---gGvl~lDEIn~~------------~~~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 287 RGWALRAGAAVLAD---GGILAVDHLEGA------------PEPHRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPGE 350 (506)
T ss_dssp SSEEEEECHHHHTT---TSEEEEECCTTC------------CHHHHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCCC
T ss_pred CCcccCCCeeEEcC---CCeeehHhhhhC------------CHHHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCccc
Confidence 000 0001122222 379999999765 3556788888887432110011 1234478999999764
Q ss_pred -----------CccHHHHhhcccc-cccCCCCHHH-------------HHHHHHHHHc----cCCCCCcccHHHHHH---
Q 009911 394 -----------DIDEALRRRLEKR-IYIPLPNFES-------------RKELIKINLK----TVEVSKDVDIDEVAR--- 441 (522)
Q Consensus 394 -----------~ld~aL~rRf~~~-i~i~~Pd~~~-------------R~~Ilk~~l~----~~~l~~~~dl~~LA~--- 441 (522)
.|++++++||+.. +.+..|+.+. ...++. +.+ ...+.++ ..+.|..
T Consensus 351 ~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~e-a~~yI~~~y~ 428 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEE-ARKRLEHWYE 428 (506)
T ss_dssp --CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHH-HHHHHHHHHH
T ss_pred ccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHH-HHHHHHHHHH
Confidence 7889999999643 3456665433 122222 112 1111111 0111110
Q ss_pred --------------HcCCCcHHHHHHHHHHHHHHHHHHHhhcCChHHHhhccccccCCCCccHHHHHHHHHhhCC
Q 009911 442 --------------RTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQR 502 (522)
Q Consensus 442 --------------~t~Gys~~dI~~lv~~A~~~a~~r~~~~~~~~~i~~~~~~~~~~~~lt~~df~~AL~~~~~ 502 (522)
..-|.|++.+..+++-|...|.-+. ...|+.+|+..|+..++.
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g------------------R~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL------------------SDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC------------------cCCCCHHHHHHHHHHHHH
Confidence 1336788888888887777666655 568999999999887653
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.89 E-value=1e-07 Score=96.25 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=112.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh---
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA--- 308 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~--- 308 (522)
.+...-..++|.+...+.|.+.+.. .+.++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 3455667799999999998887642 14899999999999999999999986 5555554321
Q ss_pred ---------hhhh----------------------------chhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc
Q 009911 309 ---------SKWR----------------------------GESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351 (522)
Q Consensus 309 ---------~~~~----------------------------g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~ 351 (522)
..+. ......+..+...+....|.+|+|||++.+.....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---- 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---- 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----
Confidence 0000 01122222232333333489999999998763100
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc---------HHHHhhcccccccCCCCHHHHHHHHH
Q 009911 352 HESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID---------EALRRRLEKRIYIPLPNFESRKELIK 422 (522)
Q Consensus 352 ~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld---------~aL~rRf~~~i~i~~Pd~~~R~~Ilk 422 (522)
.....+...|...++... .+.+|.|+.....+. ..+..|+...+.++..+.++..+++.
T Consensus 146 -~~~~~~~~~L~~~~~~~~-----------~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~ 213 (350)
T 2qen_A 146 -RGGKELLALFAYAYDSLP-----------NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLK 213 (350)
T ss_dssp -TTTHHHHHHHHHHHHHCT-----------TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHHhcC-----------CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHH
Confidence 011222333333333221 144444443321111 12233554578999999999999998
Q ss_pred HHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 423 INLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 423 ~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
..+...... .+..+..+...+.|+.. -|..++.
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 214 RGFREVNLDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 766543222 23456778889998754 3555543
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=2e-09 Score=96.87 Aligned_cols=106 Identities=20% Similarity=0.340 Sum_probs=67.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARG 347 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~ 347 (522)
...++|+||+|+|||+|+++++..+ |..++.++...+... +....+.+|+|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 4589999999999999999999988 777888887765432 11235789999999865321
Q ss_pred CCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc--HHHHhhcccccccC
Q 009911 348 ASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID--EALRRRLEKRIYIP 410 (522)
Q Consensus 348 ~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld--~aL~rRf~~~i~i~ 410 (522)
. ...|+..++.....+. .++||++...|..+. +.|++||..-..+.
T Consensus 99 ------~----~~~l~~li~~~~~~g~-------~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 99 ------E----QALLFSIFNRFRNSGK-------GFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp ------H----HHHHHHHHHHHHHHTC-------CEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred ------H----HHHHHHHHHHHHHcCC-------cEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 1 2334444443332211 124554443554333 89999986554443
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=5.3e-08 Score=98.55 Aligned_cols=188 Identities=16% Similarity=0.123 Sum_probs=111.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh---
Q 009911 232 SPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA--- 308 (522)
Q Consensus 232 ~~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~--- 308 (522)
.+......++|-+...+.|.+ +.. ..++|+||+|+|||+|++.+++.++..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 345566789999988888877 521 3899999999999999999999987777777765320
Q ss_pred ----hhhhch---------------------------------------hHHHHHHHHHHHHhh--CCcEEEEechhhhh
Q 009911 309 ----SKWRGE---------------------------------------SERMVRCLFDLARAY--APSTIFIDEIDSLC 343 (522)
Q Consensus 309 ----~~~~g~---------------------------------------~e~~l~~~f~~a~~~--~p~VL~IDEiD~l~ 343 (522)
..+... ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 000000 001233444444332 38899999999886
Q ss_pred hccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCcc---------HHHHhhcccccccCCCCH
Q 009911 344 NARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDID---------EALRRRLEKRIYIPLPNF 414 (522)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld---------~aL~rRf~~~i~i~~Pd~ 414 (522)
.... ... ...+..+ ++... .+.+|.+++....+. ..+..|+...+.++..+.
T Consensus 151 ~~~~----~~~-~~~l~~~---~~~~~-----------~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~ 211 (357)
T 2fna_A 151 KLRG----VNL-LPALAYA---YDNLK-----------RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSR 211 (357)
T ss_dssp GCTT----CCC-HHHHHHH---HHHCT-----------TEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCH
T ss_pred ccCc----hhH-HHHHHHH---HHcCC-----------CeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCH
Confidence 4210 111 1122222 22211 145555554322111 123335546788999999
Q ss_pred HHHHHHHHHHHccCCCCCcccHHHHHHHcCCCcHHHHHHHHH
Q 009911 415 ESRKELIKINLKTVEVSKDVDIDEVARRTDGYSGDDLTNVCR 456 (522)
Q Consensus 415 ~~R~~Ilk~~l~~~~l~~~~dl~~LA~~t~Gys~~dI~~lv~ 456 (522)
++..+++...+.......+ +...+...+.|+.. -+..++.
T Consensus 212 ~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 212 EEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHH
Confidence 9999999877653322222 23788899998754 3554443
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.84 E-value=9.1e-09 Score=96.51 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCCCCcccccCcHH----HHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 232 SPGVRWDDVAGLTE----AKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 232 ~~~~~~~di~G~~~----vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
+...+|+++++... +.+.+..++.... ....+.+++|+||+|||||+||++++..+ +.+++.+++
T Consensus 19 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 19 ILRASLSDVDLNDDGRIKAIRFAERFVAEYE--------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp GGCCCTTSSCCSSHHHHHHHHHHHHHHHHCC--------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HHcCCHhhccCCChhHHHHHHHHHHHHHHhh--------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 34678999997552 3444444443210 00112699999999999999999999988 678888888
Q ss_pred hhhhhhhhchhH-HHHHHHHHHHHhhCCcEEEEechhhh
Q 009911 305 ATLASKWRGESE-RMVRCLFDLARAYAPSTIFIDEIDSL 342 (522)
Q Consensus 305 ~~l~~~~~g~~e-~~l~~~f~~a~~~~p~VL~IDEiD~l 342 (522)
..+...+..... ..+..++.... .+.+|||||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 776544322110 00122222222 2469999999754
No 98
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.73 E-value=5e-08 Score=101.47 Aligned_cols=198 Identities=23% Similarity=0.221 Sum_probs=113.7
Q ss_pred cccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhhhhhhh--
Q 009911 237 WDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSATLASKW-- 311 (522)
Q Consensus 237 ~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~l~~~~-- 311 (522)
+..++|.....+.+.+.+.. .......|||+|++||||+++|+++....+ .+|+.++|..+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHH----------hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45678876666666555432 112234799999999999999999998864 689999998754321
Q ss_pred ---hchhH-------HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCC--CCCCCCCC
Q 009911 312 ---RGESE-------RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNN--TGTNEDGS 379 (522)
Q Consensus 312 ---~g~~e-------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~--~~~~~~~~ 379 (522)
.|... ......|+.|. .++||||||+.+. ..++..|+..++.-.. .+. ....
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~------------~~~q~~Ll~~l~~~~~~~~g~-~~~~ 269 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELS------------LEAQAKLLRVIESGKFYRLGG-RKEI 269 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCC------------HHHHHHHHHHHHHSEECCBTC-CSBE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCC------------HHHHHHHHHHHhcCcEEeCCC-Ccee
Confidence 11100 00112333333 3799999998763 4567778887775221 111 1112
Q ss_pred cceEEEEeecCCC-------CCccHHHHhhcccccccCCCCH----HHHHHHHHHHHccC----CCC-Cccc---HHHHH
Q 009911 380 RKIVMVLAATNFP-------WDIDEALRRRLEKRIYIPLPNF----ESRKELIKINLKTV----EVS-KDVD---IDEVA 440 (522)
Q Consensus 380 ~~~VivIattn~p-------~~ld~aL~rRf~~~i~i~~Pd~----~~R~~Ilk~~l~~~----~l~-~~~d---l~~LA 440 (522)
...+.||++||.. ..+.+.|..|+. .+.+..|.. ++...|+..++... ... ..++ +..|.
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYYRLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHHhhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 2347788999864 244566776773 333444443 55555666655432 111 2233 33333
Q ss_pred HHcCCCcHHHHHHHHHHHHHH
Q 009911 441 RRTDGYSGDDLTNVCRDASLN 461 (522)
Q Consensus 441 ~~t~Gys~~dI~~lv~~A~~~ 461 (522)
...=-...++|.++++.|...
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHh
Confidence 322112456888888877653
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.68 E-value=1e-08 Score=103.10 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=48.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT--FFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~--~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 345 (522)
..++|+||||||||+||.++|...|.+ |+.+...+..+.+....+..+..+++...... +||||+|+.+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 467999999999999999999876544 55552122222233445556666666665544 9999999998644
No 100
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.65 E-value=1.2e-07 Score=98.04 Aligned_cols=198 Identities=21% Similarity=0.270 Sum_probs=111.5
Q ss_pred ccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEeehhhhhhhhh---
Q 009911 238 DDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTT--FFNVSSATLASKWR--- 312 (522)
Q Consensus 238 ~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~--~i~v~~~~l~~~~~--- 312 (522)
.+++|.....+.+.+.+... ......||++|++||||+++|+++....+.. |+.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhh----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46788776666655544221 1122379999999999999999999887543 99999987543211
Q ss_pred --chhH-------HHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCC-CCCCCCcce
Q 009911 313 --GESE-------RMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTG-TNEDGSRKI 382 (522)
Q Consensus 313 --g~~e-------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~-~~~~~~~~~ 382 (522)
|... ..-...|+.|. .++||||||+.|. ..++..|+..++.-.... +......-.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELD------------QRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSC------------HHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCC------------HHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 1000 00012344433 3799999997763 456788888887432111 000011223
Q ss_pred EEEEeecCCC-------CCccHHHHhhccc-ccccCCCCH--HHHHHHHHHHHccC----CCC-Cccc---HHHHHHHcC
Q 009911 383 VMVLAATNFP-------WDIDEALRRRLEK-RIYIPLPNF--ESRKELIKINLKTV----EVS-KDVD---IDEVARRTD 444 (522)
Q Consensus 383 VivIattn~p-------~~ld~aL~rRf~~-~i~i~~Pd~--~~R~~Ilk~~l~~~----~l~-~~~d---l~~LA~~t~ 444 (522)
+.||++||.. ..+.+.|..|+.. .|.+|+... ++...|+..++... ... ..++ +..|....=
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 343 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEW 343 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCC
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 6688888854 2344677778742 355665544 56666766666432 111 1233 233333221
Q ss_pred CCcHHHHHHHHHHHHH
Q 009911 445 GYSGDDLTNVCRDASL 460 (522)
Q Consensus 445 Gys~~dI~~lv~~A~~ 460 (522)
.-..++|.++++.|..
T Consensus 344 pGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 344 KGNVRELKNLIERAVI 359 (368)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 1244666667766654
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.64 E-value=1.3e-06 Score=109.03 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=90.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~ 351 (522)
.++++.||+|||||++++++|+.+|.+++.++|++-.. ...+..+|.-+.... +.+++|||+.+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~------- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDE------- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCH-------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcCh-------
Confidence 38999999999999999999999999999999986443 223455665555443 7999999987632
Q ss_pred hhhHHHH---HHHHHHHhhhcC----CCCCCCCCCcceEEEEeecCC----CCCccHHHHhhcccccccCCCCHHHHHHH
Q 009911 352 HESSRRV---KSELLVQVDGVN----NTGTNEDGSRKIVMVLAATNF----PWDIDEALRRRLEKRIYIPLPNFESRKEL 420 (522)
Q Consensus 352 ~~~~~~~---~~~Ll~~ld~~~----~~~~~~~~~~~~VivIattn~----p~~ld~aL~rRf~~~i~i~~Pd~~~R~~I 420 (522)
+....+ +..++..+.... ..+. ...-...+.|++|.|. ...|+++|++|| +.+.+..||.+...+|
T Consensus 712 -evLs~l~~~l~~i~~al~~~~~~i~~~g~-~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 712 -KVLSAVSANIQQIQNGLQVGKSHITLLEE-ETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEM 788 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEEECSSS-EEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCcEEeeCCc-EEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHH
Confidence 222222 122222222111 1100 0011233567888883 358999999999 6899999999888887
Q ss_pred HH
Q 009911 421 IK 422 (522)
Q Consensus 421 lk 422 (522)
+-
T Consensus 789 ~l 790 (2695)
T 4akg_A 789 IL 790 (2695)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.61 E-value=2.4e-08 Score=94.25 Aligned_cols=126 Identities=19% Similarity=0.233 Sum_probs=75.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH--------hC-CcEEEeehhhhhhhhh----------chhHH--HHHHHHHHH--Hhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE--------CG-TTFFNVSSATLASKWR----------GESER--MVRCLFDLA--RAY 329 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~--------lg-~~~i~v~~~~l~~~~~----------g~~e~--~l~~~f~~a--~~~ 329 (522)
-+|++|+||||||++|..++.. .| .+++..+...+.-... ..... ....+++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 6789999999999999886443 34 5665555544432111 11000 012233331 223
Q ss_pred CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhccccccc
Q 009911 330 APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYI 409 (522)
Q Consensus 330 ~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i 409 (522)
..+||+|||++.+++.+.... +.. .++..++.... ..+-||.+++.+..|+.++++|+...+++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~--e~~-----rll~~l~~~r~---------~~~~iil~tq~~~~l~~~lr~ri~~~~~l 150 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS--KIP-----ENVQWLNTHRH---------QGIDIFVLTQGPKLLDQNLRTLVRKHYHI 150 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC--CCC-----HHHHGGGGTTT---------TTCEEEEEESCGGGBCHHHHTTEEEEEEE
T ss_pred CceEEEEEChhhhccCccccc--hhH-----HHHHHHHhcCc---------CCeEEEEECCCHHHHhHHHHHHhheEEEE
Confidence 468999999999975542111 111 24444433221 22566777777999999999999989988
Q ss_pred CCCCH
Q 009911 410 PLPNF 414 (522)
Q Consensus 410 ~~Pd~ 414 (522)
+.|..
T Consensus 151 ~~~~~ 155 (199)
T 2r2a_A 151 ASNKM 155 (199)
T ss_dssp EECSS
T ss_pred cCccc
Confidence 87644
No 103
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.57 E-value=3.5e-08 Score=99.43 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=60.2
Q ss_pred CCCCcccccCcH----HHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeeh
Q 009911 233 PGVRWDDVAGLT----EAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG----TTFFNVSS 304 (522)
Q Consensus 233 ~~~~~~di~G~~----~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg----~~~i~v~~ 304 (522)
.+.+|+++++.. .+...+..++... ......+++|+||||||||+||.++|..+. .+++.+++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~---------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY---------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC---------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc---------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 346889988643 2333444444321 011236999999999999999999998664 78888888
Q ss_pred hhhhhhhhchh-HHHHHHHHHHHHhhCCcEEEEechhhh
Q 009911 305 ATLASKWRGES-ERMVRCLFDLARAYAPSTIFIDEIDSL 342 (522)
Q Consensus 305 ~~l~~~~~g~~-e~~l~~~f~~a~~~~p~VL~IDEiD~l 342 (522)
..+...+.... ...+..++... ....+||||||+..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 87765433211 11111222222 23579999999654
No 104
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.52 E-value=7.9e-08 Score=90.48 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGE 351 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~ 351 (522)
+++||+||||||||++|.++|+.+...++.+..+.. ..+ +.. .....||+|||+|.-+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~--l~~~kIiiLDEad~~~-------- 116 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEP--LTDTKVAMLDDATTTC-------- 116 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGG--GTTCSSEEEEEECHHH--------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hcc--cCCCCEEEEECCCchh--------
Confidence 479999999999999999999999765543321100 000 001 1123599999997421
Q ss_pred hhhHHHHHHHHHHHhhhcCC---CCCCCCCCcceEEEEeecCCC---CCccHHHHhhcccccccCCC
Q 009911 352 HESSRRVKSELLVQVDGVNN---TGTNEDGSRKIVMVLAATNFP---WDIDEALRRRLEKRIYIPLP 412 (522)
Q Consensus 352 ~~~~~~~~~~Ll~~ld~~~~---~~~~~~~~~~~VivIattn~p---~~ld~aL~rRf~~~i~i~~P 412 (522)
.+.+...+...+++... .............+|.|||.. +..-+.|.+|+. .+.++.|
T Consensus 117 ---~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~~ 179 (212)
T 1tue_A 117 ---WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPNA 179 (212)
T ss_dssp ---HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCSC
T ss_pred ---HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCCC
Confidence 12223345566666420 000000011124678888874 233378999983 6666643
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.40 E-value=2.8e-07 Score=115.61 Aligned_cols=142 Identities=18% Similarity=0.257 Sum_probs=86.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEeehhhhhhhhhchhHHHHHHHHHHH----H------hhC------CcEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-GTTFFNVSSATLASKWRGESERMVRCLFDLA----R------AYA------PSTI 334 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-g~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a----~------~~~------p~VL 334 (522)
++|||+||+|||||+++..+...+ +..++.++++.-.. ...+...++.. + ... ..||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 589999999999998876554443 55667777654321 12233333321 0 011 2499
Q ss_pred EEechhhhhhccCCCCchhhHHHHHHHHHHHhh--hcCCCCCCCCCCcceEEEEeecCCC-----CCccHHHHhhccccc
Q 009911 335 FIDEIDSLCNARGASGEHESSRRVKSELLVQVD--GVNNTGTNEDGSRKIVMVLAATNFP-----WDIDEALRRRLEKRI 407 (522)
Q Consensus 335 ~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld--~~~~~~~~~~~~~~~VivIattn~p-----~~ld~aL~rRf~~~i 407 (522)
|||||+.-.... -........|...|| ++.............+.+|||+|.| ..++++|.|||. .+
T Consensus 1379 FiDDiNmp~~D~------yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~-vi 1451 (3245)
T 3vkg_A 1379 FCDEINLPSTDK------YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP-IL 1451 (3245)
T ss_dssp EETTTTCCCCCT------TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC-EE
T ss_pred EecccCCCCccc------cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce-EE
Confidence 999997532111 111123333333333 2222211111223457899999987 478999999995 79
Q ss_pred ccCCCCHHHHHHHHHHHHc
Q 009911 408 YIPLPNFESRKELIKINLK 426 (522)
Q Consensus 408 ~i~~Pd~~~R~~Ilk~~l~ 426 (522)
+++.|+.++...|+..++.
T Consensus 1452 ~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999876654
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.27 E-value=2.7e-06 Score=103.18 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=71.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh----hhhhhc------------hhHHHHHHHHHHHHhh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL----ASKWRG------------ESERMVRCLFDLARAY 329 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l----~~~~~g------------~~e~~l~~~f~~a~~~ 329 (522)
.+.++++|+||||||||+||.+++.+. |..+..++.... .....| ..+..++.++..++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 455789999999999999999998876 445555554422 111112 3456777788888889
Q ss_pred CCcEEEEechhhhhhcc---CCCCchhh--HHHHHHHHHHHhhhcCCCC
Q 009911 330 APSTIFIDEIDSLCNAR---GASGEHES--SRRVKSELLVQVDGVNNTG 373 (522)
Q Consensus 330 ~p~VL~IDEiD~l~~~~---~~~~~~~~--~~~~~~~Ll~~ld~~~~~~ 373 (522)
+|++||||+++.+.+.. +..++... ..+++.++|..|.+.....
T Consensus 1505 ~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~ 1553 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 1553 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887632 21222122 3567777777777766543
No 107
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.24 E-value=1.6e-06 Score=84.97 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
.++++|+||||||||++|++||+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999998654
No 108
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.15 E-value=2.9e-05 Score=78.83 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=98.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CC-c--EEEeehhhhhhhhhchhHHHHHHHHHHHH----hhCCcEEEEechh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GT-T--FFNVSSATLASKWRGESERMVRCLFDLAR----AYAPSTIFIDEID 340 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~-~--~i~v~~~~l~~~~~g~~e~~l~~~f~~a~----~~~p~VL~IDEiD 340 (522)
.+.+||+||+|.||++.++.+++.+ +. + ++.++.. .. ++.+++.+. .....||+|||+|
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~----~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-------TD----WNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-------CC----HHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-------CC----HHHHHHHhcCcCCccCCeEEEEECCC
Confidence 3589999999999999999998876 32 2 2222210 11 344444443 2345799999998
Q ss_pred h-hhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCC-----CCCccHHHHhhcccccccCCCCH
Q 009911 341 S-LCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNF-----PWDIDEALRRRLEKRIYIPLPNF 414 (522)
Q Consensus 341 ~-l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~-----p~~ld~aL~rRf~~~i~i~~Pd~ 414 (522)
. +. ....+.|+..++..... .++|+++++. ...+.+++.+|+. .+.+..++.
T Consensus 87 ~kl~------------~~~~~aLl~~le~p~~~---------~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~ 144 (343)
T 1jr3_D 87 NGPN------------AAINEQLLTLTGLLHDD---------LLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQ 144 (343)
T ss_dssp SCCC------------TTHHHHHHHHHTTCBTT---------EEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCT
T ss_pred CCCC------------hHHHHHHHHHHhcCCCC---------eEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCH
Confidence 6 53 12457788888765432 2445554432 2357789999994 788888888
Q ss_pred HHHHHHHHHHHccCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 009911 415 ESRKELIKINLKTVEVS-KDVDIDEVARRTDGYSGDDLTNVCRDA 458 (522)
Q Consensus 415 ~~R~~Ilk~~l~~~~l~-~~~dl~~LA~~t~Gys~~dI~~lv~~A 458 (522)
.+....++..+....+. ++..+..|+..+.| +.+++.+.+...
T Consensus 145 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl 188 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERL 188 (343)
T ss_dssp THHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHH
Confidence 88888888877665433 22335667776665 455555555443
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.13 E-value=1.3e-05 Score=73.91 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=24.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
.+.|.||+|+|||||++.|+..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999999875543
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.09 E-value=3e-05 Score=97.66 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=86.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCch
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEH 352 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~ 352 (522)
+..+.||+|||||.+++.+|+.+|..++.++|++-.. ...+..+|.-+... .+..++|||+.+- .
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~--------~ 670 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLE--------E 670 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSC--------H
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCC--------H
Confidence 7789999999999999999999999999999976432 22345555544443 3688999998763 1
Q ss_pred hhHHHHHHHHHHHhh----hcCCCC-------CCCCCCcceEEEEeecCC----CCCccHHHHhhcccccccCCCCHHHH
Q 009911 353 ESSRRVKSELLVQVD----GVNNTG-------TNEDGSRKIVMVLAATNF----PWDIDEALRRRLEKRIYIPLPNFESR 417 (522)
Q Consensus 353 ~~~~~~~~~Ll~~ld----~~~~~~-------~~~~~~~~~VivIattn~----p~~ld~aL~rRf~~~i~i~~Pd~~~R 417 (522)
.+++.+..++. .+.... +..-.-...+.|++|.|. ..+|++.|+.|| +.|.+..||.+..
T Consensus 671 ----~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 671 ----RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMI 745 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHH
Confidence 22222222221 111000 000001223567888883 368999999999 6899999999888
Q ss_pred HHHHH
Q 009911 418 KELIK 422 (522)
Q Consensus 418 ~~Ilk 422 (522)
.+|+-
T Consensus 746 ~ei~L 750 (3245)
T 3vkg_A 746 AQVML 750 (3245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87753
No 111
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.90 E-value=4.3e-06 Score=86.35 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=67.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhhhhhhchhHHHHHHHHHHHHhhCCcEEEEechhhhhh-ccCC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCN-ARGA 348 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~-~~~~ 348 (522)
+...++|+||+|+|||||+++++..++..++.+...... .. |......+..++++||++.+.. .+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~------~~lg~~~q~~~~l~dd~~~~~~~~r~l 235 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LN------FELGVAIDQFLVVFEDVKGTGGESRDL 235 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HH------HHHGGGTTCSCEEETTCCCSTTTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HH------HHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 445899999999999999999999998776654322110 00 1111223456789999998764 2211
Q ss_pred CCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHh--hcccccccCC
Q 009911 349 SGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPL 411 (522)
Q Consensus 349 ~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~r--Rf~~~i~i~~ 411 (522)
....... ....+...+++. +.|+.++|.++.+ +++++ |++..+++..
T Consensus 236 ~~~~~~~--~~~~l~~~ldG~-------------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 236 PSGQGIN--NLDNLRDYLDGS-------------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CCCSHHH--HHHTTHHHHHCS-------------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred cccCcch--HHHHHHHHhcCC-------------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 1111110 123344445432 4567778888888 45555 5655555533
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.79 E-value=0.00027 Score=66.52 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
+...++|+||+|+|||+|++.++..+ +..++.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34578999999999999999998654 44454444
No 113
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.75 E-value=0.00018 Score=78.33 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=95.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHH-------h--CCcEEEeeh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE-------C--GTTFFNVSS 304 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~-------l--g~~~i~v~~ 304 (522)
+.....++|.+.....|.+.+... ....+-|+|+|++|+|||+||..+++. . +.-++.++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 345567999999999999877421 112357899999999999999998642 2 223333332
Q ss_pred h---hhhhhh------hc-----------hhHHHHHHHHHHHHh-hCCcEEEEechhhhhhccCCCCchhhHHHHHHHHH
Q 009911 305 A---TLASKW------RG-----------ESERMVRCLFDLARA-YAPSTIFIDEIDSLCNARGASGEHESSRRVKSELL 363 (522)
Q Consensus 305 ~---~l~~~~------~g-----------~~e~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll 363 (522)
. .+...+ .+ ..+.....+...... ..|.+|+||+++... .
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~------------------~- 250 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW------------------V- 250 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH------------------H-
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH------------------H-
Confidence 1 111110 00 011222222222222 257899999996321 1
Q ss_pred HHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhccccccc---CCCCHHHHHHHHHHHHccCCCCCcccHHHHH
Q 009911 364 VQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYI---PLPNFESRKELIKINLKTVEVSKDVDIDEVA 440 (522)
Q Consensus 364 ~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i---~~Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA 440 (522)
++.+.. ...||.||........ + . ...+.+ ...+.++-.++|...+.............|+
T Consensus 251 --l~~l~~----------~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~ 314 (591)
T 1z6t_A 251 --LKAFDS----------QCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSII 314 (591)
T ss_dssp --HHTTCS----------SCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHH
T ss_pred --HHHhcC----------CCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence 121211 1355666664321110 0 0 112233 3578888888888776431111123467899
Q ss_pred HHcCCCcHHHHHHHH
Q 009911 441 RRTDGYSGDDLTNVC 455 (522)
Q Consensus 441 ~~t~Gys~~dI~~lv 455 (522)
+.++|...+ |..+.
T Consensus 315 ~~~~G~PLa-l~~~a 328 (591)
T 1z6t_A 315 KECKGSPLV-VSLIG 328 (591)
T ss_dssp HHHTTCHHH-HHHHH
T ss_pred HHhCCCcHH-HHHHH
Confidence 999987543 44433
No 114
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.64 E-value=0.00098 Score=69.93 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=48.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh--------------------hhhchhHHHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS--------------------KWRGESERMVRCLFDLA 326 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~--------------------~~~g~~e~~l~~~f~~a 326 (522)
++.-|+|+|++|+||||++..+|..+ |..+..+++..... .........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999876 55565555332100 00112344456677777
Q ss_pred HhhCCcEEEEechh
Q 009911 327 RAYAPSTIFIDEID 340 (522)
Q Consensus 327 ~~~~p~VL~IDEiD 340 (522)
+.....+|+||..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77677899999873
No 115
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.59 E-value=0.00019 Score=65.16 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
.-|+|+|+||+||||++++++..++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 468999999999999999999999999988765543
No 116
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.57 E-value=0.00017 Score=76.44 Aligned_cols=67 Identities=22% Similarity=0.348 Sum_probs=40.5
Q ss_pred hhhhccCCCCCccccc-CcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CC-cEE
Q 009911 226 RDVLETSPGVRWDDVA-GLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---GT-TFF 300 (522)
Q Consensus 226 ~~~~~~~~~~~~~di~-G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g~-~~i 300 (522)
..+..++.+.+|+++- ++..+...+...+.. ....+||.|++|||||+++.+++..+ +. .++
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il 78 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEALISTGETGII 78 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 4567778889988886 555666655554432 11389999999999999999998877 33 455
Q ss_pred Eeehh
Q 009911 301 NVSSA 305 (522)
Q Consensus 301 ~v~~~ 305 (522)
.+..+
T Consensus 79 ~~a~T 83 (459)
T 3upu_A 79 LAAPT 83 (459)
T ss_dssp EEESS
T ss_pred EecCc
Confidence 55443
No 117
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.57 E-value=0.00078 Score=64.27 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA 292 (522)
+..-+.|.||+|+|||||++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 44578999999999999999998
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.56 E-value=0.00027 Score=72.61 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=49.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh----h------------chhHHHHHHHHHHHHhh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW----R------------GESERMVRCLFDLARAY 329 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~----~------------g~~e~~l~~~f~~a~~~ 329 (522)
.+..-++|+|+||+|||+||..+|..+ +..++.++........ . ...+..+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 344578999999999999999988765 5566666643211110 0 11233333333334456
Q ss_pred CCcEEEEechhhhhh
Q 009911 330 APSTIFIDEIDSLCN 344 (522)
Q Consensus 330 ~p~VL~IDEiD~l~~ 344 (522)
.+.+|+||.+..+..
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 789999999998874
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.54 E-value=0.00029 Score=72.01 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=48.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhh----------------hhchhHHHHHHHHHHHHhhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASK----------------WRGESERMVRCLFDLARAYA 330 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~----------------~~g~~e~~l~~~f~~a~~~~ 330 (522)
+..-++|+||||+|||+|+..+|..+ +..++.++....... .....+..+..+....+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 44568999999999999999998875 556666665432110 01112333333333344567
Q ss_pred CcEEEEechhhhhh
Q 009911 331 PSTIFIDEIDSLCN 344 (522)
Q Consensus 331 p~VL~IDEiD~l~~ 344 (522)
+.+|+||.+..+.+
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 89999999988774
No 120
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.53 E-value=0.00055 Score=80.46 Aligned_cols=174 Identities=11% Similarity=0.047 Sum_probs=96.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh---C----CcEEEeehh
Q 009911 233 PGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC---G----TTFFNVSSA 305 (522)
Q Consensus 233 ~~~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l---g----~~~i~v~~~ 305 (522)
.+.....++|.++..+.|.+.+... ....+-|.|+|+.|+|||+||+.+++.. . ..++.++..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 4455667999999999999987431 1122468899999999999999987652 1 123333322
Q ss_pred h-----hh-------hhhh---------chhHHHHHHHHHHHHh--hCCcEEEEechhhhhhccCCCCchhhHHHHHHHH
Q 009911 306 T-----LA-------SKWR---------GESERMVRCLFDLARA--YAPSTIFIDEIDSLCNARGASGEHESSRRVKSEL 362 (522)
Q Consensus 306 ~-----l~-------~~~~---------g~~e~~l~~~f~~a~~--~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~L 362 (522)
. +. .... ......+...+..... ..+.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 1 10 0000 0011112222222212 237899999996421
Q ss_pred HHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHhhcccccccCC-CCHHHHHHHHHHHHccCCCCCcccHHHHHH
Q 009911 363 LVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPL-PNFESRKELIKINLKTVEVSKDVDIDEVAR 441 (522)
Q Consensus 363 l~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~rRf~~~i~i~~-Pd~~~R~~Ilk~~l~~~~l~~~~dl~~LA~ 441 (522)
.++.+... ..||.||..+..... + ......+.++. .+.++-.++|................+|++
T Consensus 250 --~~~~~~~~----------~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~ 315 (1249)
T 3sfz_A 250 --VLKAFDNQ----------CQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIK 315 (1249)
T ss_dssp --HHTTTCSS----------CEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHH
T ss_pred --HHHhhcCC----------CEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHH
Confidence 12222111 356667765532210 0 11234566665 788888888887664332222234678999
Q ss_pred HcCCCcHH
Q 009911 442 RTDGYSGD 449 (522)
Q Consensus 442 ~t~Gys~~ 449 (522)
.+.|...+
T Consensus 316 ~~~glPLa 323 (1249)
T 3sfz_A 316 ECKGSPLV 323 (1249)
T ss_dssp HTTTCHHH
T ss_pred HhCCCHHH
Confidence 99987543
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.52 E-value=0.00023 Score=86.64 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=64.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhhhh----hc--------hhHHHHHHHHHHHH----hh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLASKW----RG--------ESERMVRCLFDLAR----AY 329 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~~~----~g--------~~e~~l~~~f~~a~----~~ 329 (522)
.+..-++|+|+||+|||+||..+|..+ +.+++.++........ .| ..+..+..++..++ ..
T Consensus 730 ~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~ 809 (2050)
T 3cmu_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhcc
Confidence 466779999999999999999999877 3468888765433222 11 01112334444443 36
Q ss_pred CCcEEEEechhhhhh-cc--CC--CCchhhHHHHHHHHHHHhhhcCCC
Q 009911 330 APSTIFIDEIDSLCN-AR--GA--SGEHESSRRVKSELLVQVDGVNNT 372 (522)
Q Consensus 330 ~p~VL~IDEiD~l~~-~~--~~--~~~~~~~~~~~~~Ll~~ld~~~~~ 372 (522)
.|++||||.|+.+.. .. +. +.......+.+..++..|..+...
T Consensus 810 ~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke 857 (2050)
T 3cmu_A 810 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999875 21 11 111123344466666666665443
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.49 E-value=0.00039 Score=66.12 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH--h-------CCcEEEeehhh------hhhh--hhc----------------hhH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATE--C-------GTTFFNVSSAT------LASK--WRG----------------ESE 316 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~--l-------g~~~i~v~~~~------l~~~--~~g----------------~~e 316 (522)
+..-++|+||+|+|||+|++.+|.. + +..++.++... +... ..+ ..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 4457899999999999999999985 3 34566665433 1000 000 011
Q ss_pred ---HHHHHHHHHHHhhCCcEEEEechhhhhh
Q 009911 317 ---RMVRCLFDLARAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 317 ---~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 344 (522)
..+..+........|.+|+|||+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1223344444556789999999988764
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.48 E-value=0.0005 Score=64.31 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
.+..-++|+||+|+|||+|+..+|...+..++.++..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 3445789999999999999999998667777777643
No 124
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.42 E-value=8.8e-05 Score=67.88 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
+.|+|+|++||||||+++.+|..+|.+|+..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 58999999999999999999999999988654
No 125
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.40 E-value=0.00035 Score=71.30 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh----hhhc------------hhHHHHHHHHHHHHhhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS----KWRG------------ESERMVRCLFDLARAYA 330 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~----~~~g------------~~e~~l~~~f~~a~~~~ 330 (522)
+..-++|+||||+|||+||..+|..+ +..++.++...... ...| ..+..+..+...++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 44569999999999999999998665 45555555432111 0011 12333333333444567
Q ss_pred CcEEEEechhhhhh
Q 009911 331 PSTIFIDEIDSLCN 344 (522)
Q Consensus 331 p~VL~IDEiD~l~~ 344 (522)
|.+|+||++..+..
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 99999999998873
No 126
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.40 E-value=0.0004 Score=69.98 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeehhhh---------hhhhh---------------chh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSSATL---------ASKWR---------------GES 315 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~~~l---------~~~~~---------------g~~ 315 (522)
.+..-++|+||||+|||+||..+|..+ +..++.++.... ...+. ...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 344578999999999999999999875 456666665431 00000 001
Q ss_pred H---HHHHHHHHHHHh-hCCcEEEEechhhhhhc
Q 009911 316 E---RMVRCLFDLARA-YAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 316 e---~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 345 (522)
+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 1 223344445555 67899999999988743
No 127
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.38 E-value=0.0011 Score=69.54 Aligned_cols=71 Identities=17% Similarity=0.092 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh----------hhhh----------chhHHHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA----------SKWR----------GESERMVRCLFDLA 326 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~----------~~~~----------g~~e~~l~~~f~~a 326 (522)
++.-++|+|++|+||||++..+|..+ |..+..+++.... .... ......+...+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999999776 5555555432110 0000 01122234445555
Q ss_pred HhhCCcEEEEechh
Q 009911 327 RAYAPSTIFIDEID 340 (522)
Q Consensus 327 ~~~~p~VL~IDEiD 340 (522)
....+.+|+||..-
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 55568899999884
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.33 E-value=0.0022 Score=60.97 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.+..-++|+||||+|||+|+..+|..+ +..++.++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344578999999999999998887653 44555544
No 129
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.30 E-value=0.00048 Score=70.49 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=47.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh----hhhc------------hhHHHHHHHHHHHHhhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS----KWRG------------ESERMVRCLFDLARAYA 330 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~----~~~g------------~~e~~l~~~f~~a~~~~ 330 (522)
+..-++|+|+||+|||+||..+|..+ +..++.++...... ...| ..+..+..+-...+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 44579999999999999999998765 55676666532110 0000 11222222222334567
Q ss_pred CcEEEEechhhhhh
Q 009911 331 PSTIFIDEIDSLCN 344 (522)
Q Consensus 331 p~VL~IDEiD~l~~ 344 (522)
+.+|+||.+..+..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999998874
No 130
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.00016 Score=67.42 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
...|+|.|++|+||||+++.+|..++.+++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 357999999999999999999999999987654
No 131
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.28 E-value=0.00079 Score=68.46 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeehhhh------h---hhh------------------h
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSSATL------A---SKW------------------R 312 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~~~l------~---~~~------------------~ 312 (522)
.+..-++|+||||+|||+||..+|..+ +..++.++.... . ..+ .
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 344568999999999999999999873 446666664331 0 000 0
Q ss_pred chhHHHHHHHHHHHHh--hCCcEEEEechhhhhhc
Q 009911 313 GESERMVRCLFDLARA--YAPSTIFIDEIDSLCNA 345 (522)
Q Consensus 313 g~~e~~l~~~f~~a~~--~~p~VL~IDEiD~l~~~ 345 (522)
.+....+..+....+. ..+.+|+||.+..+...
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 0011222333344455 67889999999988743
No 132
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.25 E-value=0.0032 Score=67.97 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=50.8
Q ss_pred cEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC--CccHHHHhhccccccc
Q 009911 332 STIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW--DIDEALRRRLEKRIYI 409 (522)
Q Consensus 332 ~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~--~ld~aL~rRf~~~i~i 409 (522)
-+|+|||++.++.... ..+...|...+..-. ...|-+|.+|.+|. .++..++.-|...|.+
T Consensus 345 ivvVIDE~~~L~~~~~--------~~~~~~L~~Iar~GR---------a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~l 407 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG--------KKVEELIARIAQKAR---------AAGIHLILATQRPSVDVITGLIKANIPTRIAF 407 (574)
T ss_dssp EEEEESCCTTHHHHTC--------HHHHHHHHHHHHHCT---------TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEE
T ss_pred EEEEEeCHHHHhhhhh--------HHHHHHHHHHHHHHh---------hCCeEEEEEecCcccccccHHHHhhhccEEEE
Confidence 4899999998875321 122222222222211 12388888899886 8999999999888999
Q ss_pred CCCCHHHHHHHHH
Q 009911 410 PLPNFESRKELIK 422 (522)
Q Consensus 410 ~~Pd~~~R~~Ilk 422 (522)
...+..+...|+.
T Consensus 408 rv~s~~Dsr~ILd 420 (574)
T 2iut_A 408 QVSSKIDSRTILD 420 (574)
T ss_dssp CCSCHHHHHHHHS
T ss_pred EcCCHHHHHHhcC
Confidence 9999888877774
No 133
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.23 E-value=0.00022 Score=64.08 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=29.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
-|+|.|++|+||||+++.++..++.+++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 58999999999999999999999999887663
No 134
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.0027 Score=60.32 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEeehh----hhhhhhh----------------------------
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATE----CGTTFFNVSSA----TLASKWR---------------------------- 312 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~----lg~~~i~v~~~----~l~~~~~---------------------------- 312 (522)
.+..-++|+|+||+|||++|..+|.. .+.+++.++.. .+.....
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 107 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhcc
Confidence 44457899999999999999887643 25566555432 1110000
Q ss_pred ----------chhHHHHHHHHHHHHhhCCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhh
Q 009911 313 ----------GESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVD 367 (522)
Q Consensus 313 ----------g~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld 367 (522)
......+..+........+.+++||.+..+..... .......+...|.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~---~~~~~~~~~~~L~~~a~ 169 (251)
T 2zts_A 108 SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EERKIREVLLKLNTILL 169 (251)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SGGGHHHHHHHHHHHHH
T ss_pred cchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhcc---ChHHHHHHHHHHHHHHH
Confidence 00122344455566677889999999998865432 22333444444444443
No 135
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.21 E-value=0.0016 Score=61.25 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.+..-+.|.||+|+|||||++.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999854
No 136
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.20 E-value=0.0002 Score=65.07 Aligned_cols=31 Identities=29% Similarity=0.569 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|+|.|+||+||||+++.||..++.+++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 6899999999999999999999998887643
No 137
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.20 E-value=0.004 Score=59.34 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
-.|++.|++|+|||+++-.+|..+ |..++.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 379999999999999999998776 65554433
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.20 E-value=0.00019 Score=66.33 Aligned_cols=30 Identities=17% Similarity=0.054 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC---GTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l---g~~~i~v 302 (522)
-++++||+|+||||++..++..+ |..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999997776554 5554443
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.20 E-value=0.00059 Score=65.11 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=42.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhh-------hhhhhhchh-----HHHHHHHHHHHHh----hCC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSAT-------LASKWRGES-----ERMVRCLFDLARA----YAP 331 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~-------l~~~~~g~~-----e~~l~~~f~~a~~----~~p 331 (522)
..-++++|++|+||||++..++..+ |..++.+.... +.+.. |.. -.....+++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srl-G~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRT-GTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCC-CCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhc-CCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3467889999999999998888776 55555553221 11110 100 0012345555543 247
Q ss_pred cEEEEechhhh
Q 009911 332 STIFIDEIDSL 342 (522)
Q Consensus 332 ~VL~IDEiD~l 342 (522)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999764
No 140
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.18 E-value=0.0015 Score=64.75 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
+.-++|.||||+||||+++.++..++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4578999999999999999999998555666766444
No 141
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.17 E-value=0.00024 Score=63.96 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
..|+|.|++||||||+++.+|..+|.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 38999999999999999999999999987654
No 142
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.17 E-value=0.00023 Score=64.86 Aligned_cols=32 Identities=41% Similarity=0.762 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
..|+|+|+||+||||+++.++..++..++.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 47999999999999999999999998887653
No 143
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.15 E-value=0.00024 Score=64.97 Aligned_cols=31 Identities=23% Similarity=0.582 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|+|+|+||+||||+++.++..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999887654
No 144
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.14 E-value=0.0032 Score=62.94 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=44.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhhh-------hh-------------hchhHHHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLAS-------KW-------------RGESERMVRCLFDLA 326 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~~-------~~-------------~g~~e~~l~~~f~~a 326 (522)
++.-++|+|++|+||||++..+|..+ +..+..+++..... .| .+.....+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44678999999999999999999876 44454444321110 00 012222233344555
Q ss_pred HhhCCcEEEEechh
Q 009911 327 RAYAPSTIFIDEID 340 (522)
Q Consensus 327 ~~~~p~VL~IDEiD 340 (522)
....+.+|+||+.-
T Consensus 183 ~~~~~dvvIiDtpg 196 (306)
T 1vma_A 183 LARNKDVVIIDTAG 196 (306)
T ss_dssp HHTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 56678999999873
No 145
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.09 E-value=0.00038 Score=62.76 Aligned_cols=30 Identities=23% Similarity=0.714 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
..|+|+||+|+||||+++.+|..++..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 369999999999999999999999987664
No 146
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.09 E-value=0.0013 Score=68.25 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=45.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEeehhhhh--------hhhhc------------------
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---------GTTFFNVSSATLA--------SKWRG------------------ 313 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---------g~~~i~v~~~~l~--------~~~~g------------------ 313 (522)
.+..-++|+||||+|||+|++.+|-.+ +...+.++..... ....|
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 344568999999999999999876443 2335555543210 00000
Q ss_pred -hhHHHHHHHHHHHHhhCCcEEEEechhhhhh
Q 009911 314 -ESERMVRCLFDLARAYAPSTIFIDEIDSLCN 344 (522)
Q Consensus 314 -~~e~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 344 (522)
.....+..+........|.+|+||++-.++.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 0011223333444456789999999988764
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.06 E-value=0.00032 Score=64.45 Aligned_cols=32 Identities=41% Similarity=0.651 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH-hCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE-CGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~-lg~~~i~v~ 303 (522)
..|+|+|++||||||+++.++.. +|.+++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 47999999999999999999999 787776654
No 148
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.06 E-value=0.00037 Score=63.90 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.-|+|.|+||+||||+++.++..++..++..+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 57899999999999999999999998887643
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.06 E-value=0.0071 Score=65.30 Aligned_cols=44 Identities=11% Similarity=0.002 Sum_probs=34.6
Q ss_pred cCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHH
Q 009911 241 AGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 241 ~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~ 293 (522)
+|.+..++.|.+.+... .....+.|.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 49999999998877421 011235788999999999999999997
No 150
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.05 E-value=0.0018 Score=66.06 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.+..-+.|+||+|+|||+|++.+|..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999999887
No 151
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.04 E-value=0.00044 Score=64.25 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
..|+|+|+||+||||+++.++..++.+++.++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 46999999999999999999999998876654
No 152
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.04 E-value=0.0004 Score=67.46 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
-++|.||+|+||||||+.||..++..++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 578999999999999999999999999887754
No 153
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.04 E-value=0.0014 Score=65.67 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~ 294 (522)
.+..-++|+|+||+|||+||..+|..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456899999999999999999976
No 154
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.03 E-value=0.00037 Score=62.75 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|+|+|++|+||||+++.++..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 6899999999999999999999998877643
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.03 E-value=0.0071 Score=64.61 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=49.5
Q ss_pred Cc-EEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCC--CccHHHHhhccccc
Q 009911 331 PS-TIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPW--DIDEALRRRLEKRI 407 (522)
Q Consensus 331 p~-VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~--~ld~aL~rRf~~~i 407 (522)
|. +|+|||+..++... ...+ ..++..+-..... ..+-+|.+|.+|. .++..++.-|...|
T Consensus 297 P~ivlvIDE~~~ll~~~--------~~~~-~~~l~~Lar~gRa--------~GI~LIlaTQrp~~dvl~~~i~~n~~~RI 359 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV--------GKKV-EELIARLAQKARA--------AGIHLVLATQRPSVDVITGLIKANIPTRI 359 (512)
T ss_dssp CEEEEEEETHHHHHHHH--------HHHH-HHHHHHHHHHCGG--------GTEEEEEEESCCCTTTSCHHHHHHCCEEE
T ss_pred CcEEEEEeCHHHHHhhh--------hHHH-HHHHHHHHHHhhh--------CCcEEEEEecCCccccccHHHHhhcCCeE
Confidence 44 88999998876421 1122 2222222211111 1267778888885 68889999898889
Q ss_pred ccCCCCHHHHHHHHHH
Q 009911 408 YIPLPNFESRKELIKI 423 (522)
Q Consensus 408 ~i~~Pd~~~R~~Ilk~ 423 (522)
.+...+..+...|+..
T Consensus 360 ~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 360 AFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EECCSSHHHHHHHHSS
T ss_pred EEEcCCHHHHHHhcCC
Confidence 9999999888887753
No 156
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.01 E-value=0.0008 Score=73.22 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
..++|+|+||||||+++.+++..+ +..++.+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 478999999999999999998765 5666655443
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.99 E-value=0.00046 Score=63.17 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.-|+|.|+||+||||+++.++..++.+++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 46899999999999999999999998776543
No 158
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.99 E-value=0.0014 Score=63.52 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4579999999999999999999999866666776654
No 159
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.99 E-value=0.0004 Score=62.11 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
-|+|.|+||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8999888765
No 160
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.98 E-value=0.00049 Score=63.21 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
..|+|.|+||+||||+++.+|..++.+++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 47999999999999999999999998877654
No 161
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.97 E-value=0.0005 Score=64.89 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
..|+|.|+||+||||+++.+|..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4799999999999999999999999877665
No 162
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.96 E-value=0.0006 Score=63.35 Aligned_cols=32 Identities=28% Similarity=0.663 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.-|+|.|++|+||||+++.++..+|..++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 47999999999999999999999998877654
No 163
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.95 E-value=0.012 Score=58.94 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.+..-++|.|+||+|||+|+..+|... +.+++.++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 444569999999999999999998664 34565555
No 164
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.95 E-value=0.0019 Score=64.63 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=45.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeehhhhhh----hhhc------------hhHHHHHHHHHH---HHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSSATLAS----KWRG------------ESERMVRCLFDL---ARA 328 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~~~l~~----~~~g------------~~e~~l~~~f~~---a~~ 328 (522)
-++|+||||+|||+|+-.++..+ +..++.++...-.. .-.| ..+...-.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988876554 56677777543211 0001 112220112222 244
Q ss_pred hCCcEEEEechhhhhh
Q 009911 329 YAPSTIFIDEIDSLCN 344 (522)
Q Consensus 329 ~~p~VL~IDEiD~l~~ 344 (522)
..|.+|+||-|..+..
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 5799999999999974
No 165
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.0019 Score=62.78 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEeehhhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE---CGTTFFNVSSATLA 308 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~---lg~~~i~v~~~~l~ 308 (522)
.-|+|+|+||+||||+++.++.. .|..++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 46899999999999999999998 78888866665543
No 166
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.92 E-value=0.002 Score=61.76 Aligned_cols=36 Identities=33% Similarity=0.336 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh-hhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA-TLA 308 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~-~l~ 308 (522)
.+||+||+|+|||.++.+++..++..++.+.+. .+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 599999999999999999999887766666544 443
No 167
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.92 E-value=0.00043 Score=63.20 Aligned_cols=31 Identities=35% Similarity=0.634 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
..|+|.|+||+||||+++.++..+|.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3689999999999999999999999776554
No 168
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.92 E-value=0.00072 Score=61.15 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
...++|+|++|+||||+++.++..+|..++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 35789999999999999999999998776654
No 169
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.91 E-value=0.00056 Score=61.31 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|+|+|++|+||||+++.++..++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999998887643
No 170
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.90 E-value=0.00057 Score=62.91 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.-|+|.|+||+||||+++.++..++..++..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 47999999999999999999999997776543
No 171
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.89 E-value=0.00052 Score=64.43 Aligned_cols=31 Identities=19% Similarity=0.501 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|+|+|+||+||||+++.++..++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4889999999999999999999998877653
No 172
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.88 E-value=0.00056 Score=64.16 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|+|+|+||+||||+++.++..+|..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4889999999999999999999998887653
No 173
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.88 E-value=0.0026 Score=76.67 Aligned_cols=76 Identities=25% Similarity=0.303 Sum_probs=50.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh----hhhhc------------hhHHHHHHHHHHHHhh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA----SKWRG------------ESERMVRCLFDLARAY 329 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~----~~~~g------------~~e~~l~~~f~~a~~~ 329 (522)
.+...++|+||||+|||+||..+|..+ +.+++.++..... ....| ..+..+..+-...+..
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~ 809 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHcc
Confidence 455689999999999999999998776 4467776654322 11111 1122222222233457
Q ss_pred CCcEEEEechhhhhh
Q 009911 330 APSTIFIDEIDSLCN 344 (522)
Q Consensus 330 ~p~VL~IDEiD~l~~ 344 (522)
.|.+|+||.+..+..
T Consensus 810 ~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 810 AVDVIVVDSVAALTP 824 (1706)
T ss_dssp CCSEEEESCSTTCCC
T ss_pred CCCEEEEechhhhcc
Confidence 899999999998873
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.85 E-value=0.00076 Score=64.86 Aligned_cols=39 Identities=28% Similarity=0.648 Sum_probs=27.9
Q ss_pred hhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 263 YFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 263 ~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
+|+.....+.-++|.||+|+||||+++.|+..+|...+.
T Consensus 19 ~~~~~~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 19 YFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp -------CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred HHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 334333344689999999999999999999999876654
No 175
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.85 E-value=0.00064 Score=62.06 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.-|+|.|++|+||||+++.++..++..++..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 46899999999999999999999998776653
No 176
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.85 E-value=0.0021 Score=64.73 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
+.|+|+||+|+|||+|++.+|..++..++.++.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4789999999999999999999999999888653
No 177
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.84 E-value=0.00058 Score=62.32 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG-----TTFFN 301 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg-----~~~i~ 301 (522)
.-|+|.|+||+||||+++.++..++ .+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 3689999999999999999999987 55554
No 178
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.83 E-value=0.0087 Score=58.52 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-++|+||+|+|||||+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33578999999999999999998654
No 179
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.82 E-value=0.00098 Score=61.94 Aligned_cols=31 Identities=39% Similarity=0.608 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
+.-++|.||+|+||||+++.|+..+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 3578999999999999999999999876655
No 180
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.81 E-value=0.00082 Score=64.77 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
++..|+|+||||+||||+|+.++..++..++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 3457999999999999999999999998776553
No 181
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.81 E-value=0.00082 Score=64.11 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
..|+|.|+||+||||+++.||..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4799999999999999999999999877664
No 182
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.81 E-value=0.0007 Score=62.01 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATL 307 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l 307 (522)
+.-++|.||+|+||||+++.++...+...+.++...+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3468999999999999999999987777777765544
No 183
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.81 E-value=0.00067 Score=64.36 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
..|+|.|+||+||||+++.+|..++..++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEech
Confidence 47999999999999999999999998777653
No 184
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.80 E-value=0.0013 Score=59.73 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL 307 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l 307 (522)
+..+.|+|++|+||||+++.++..+ |.+++.++...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 3568899999999999999999998 989988876544
No 185
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.79 E-value=0.00049 Score=70.06 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.+++|+|++|+||||+++++|..++.+|+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 3799999999999999999999999888553
No 186
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.78 E-value=0.00074 Score=63.72 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
..|+|.|+||+||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3689999999999999999999999887765
No 187
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.78 E-value=0.0009 Score=62.05 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.-|+|.|++|+||||+++.++..+|..++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46899999999999999999999998776654
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.77 E-value=0.0043 Score=56.18 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.1
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKA 290 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAra 290 (522)
.-+.|.||+|+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4688999999999999994
No 189
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.77 E-value=0.015 Score=54.05 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=64.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh---------hhhhhhh-----------------chhHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA---------TLASKWR-----------------GESERMVRCLF 323 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~---------~l~~~~~-----------------g~~e~~l~~~f 323 (522)
.|++++++|.||||+|-.+|-+. |..+..+... .+...+. ..........|
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 68999999999999999987665 6666665211 2222221 01123445566
Q ss_pred HHHHhh----CCcEEEEechhhhhhccCCCCchhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHH
Q 009911 324 DLARAY----APSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEAL 399 (522)
Q Consensus 324 ~~a~~~----~p~VL~IDEiD~l~~~~~~~~~~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL 399 (522)
..++.. ...+|+|||+-....-.-- -...++..+...... +-||.|+|.+ ++.|
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l---------~~~ev~~~l~~Rp~~----------~~vIlTGr~a---p~~l 167 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL---------PLEEVISALNARPGH----------QTVIITGRGC---HRDI 167 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS---------CHHHHHHHHHTSCTT----------CEEEEECSSC---CHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC---------CHHHHHHHHHhCcCC----------CEEEEECCCC---cHHH
Confidence 666543 3679999999654322100 013355555533322 4577777764 4566
Q ss_pred Hhhcccc
Q 009911 400 RRRLEKR 406 (522)
Q Consensus 400 ~rRf~~~ 406 (522)
...-+.+
T Consensus 168 ~e~AD~V 174 (196)
T 1g5t_A 168 LDLADTV 174 (196)
T ss_dssp HHHCSEE
T ss_pred HHhCcce
Confidence 6654433
No 190
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.75 E-value=0.00069 Score=61.52 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
.-|+|.|+||+||||+++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999887
No 191
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.00072 Score=61.05 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-HhCCcEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVAT-ECGTTFFN 301 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~-~lg~~~i~ 301 (522)
.-|+|.|+||+||||+++.++. .++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999998 46654443
No 192
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.69 E-value=0.0013 Score=62.44 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
++-|+|.||||+||+|.|+.||..+|.+. ++..++.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 35788999999999999999999998765 4555544
No 193
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.68 E-value=0.0012 Score=62.16 Aligned_cols=34 Identities=35% Similarity=0.576 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhhhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLA 308 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~l~ 308 (522)
.++|.||||+||+|.|+.||+.+|.+.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 4789999999999999999999997664 444443
No 194
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.68 E-value=0.0098 Score=58.60 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-++|.||||+|||+|++.+|..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33468899999999999999998776
No 195
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.68 E-value=0.00066 Score=64.13 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
..|+|.|+||+||||+++.+|..++..++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4799999999999999999999999766543
No 196
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.67 E-value=0.00094 Score=62.72 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.|+|.|+||+||||+++.++..+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 589999999999999999999999887765
No 197
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.65 E-value=0.011 Score=62.96 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=28.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeeh
Q 009911 268 RRPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSS 304 (522)
Q Consensus 268 ~~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~ 304 (522)
-.+..-++|.|+||+|||+|+..+|..+ |.+++.++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 3455568999999999999999998765 445666553
No 198
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.62 E-value=0.0015 Score=66.78 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=42.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeeh-hhhhh---------hhhchhHHHHHHHHHHHHhhCCcEEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG----TTFFNVSS-ATLAS---------KWRGESERMVRCLFDLARAYAPSTIFID 337 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg----~~~i~v~~-~~l~~---------~~~g~~e~~l~~~f~~a~~~~p~VL~ID 337 (522)
..++|.||+|+||||++++++..+. ..++.+.- ..+.. ...+.....+...+..+-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 3689999999999999999988762 33333221 11100 0011111123446666667889999999
Q ss_pred ch
Q 009911 338 EI 339 (522)
Q Consensus 338 Ei 339 (522)
|+
T Consensus 204 Ep 205 (356)
T 3jvv_A 204 EM 205 (356)
T ss_dssp CC
T ss_pred CC
Confidence 99
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.61 E-value=0.0016 Score=59.43 Aligned_cols=31 Identities=26% Similarity=0.131 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
-|+|.|++|+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88888765
No 200
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.61 E-value=0.0022 Score=59.51 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL 307 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l 307 (522)
++.-+.|.||+|+||||++++++..+ |...+.++...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34578899999999999999999998 655445555444
No 201
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.60 E-value=0.02 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHH-HHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK-AVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr-aiA~~ 294 (522)
+++++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 579999999999998643 34444
No 202
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.58 E-value=0.0053 Score=56.77 Aligned_cols=28 Identities=36% Similarity=0.656 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTF 299 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~ 299 (522)
+.|+|+||+|+|||||++.+.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3589999999999999999998875444
No 203
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.56 E-value=0.0016 Score=61.29 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.|.|.||+|+||||+++.++..+|.+++..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 689999999999999999999999877653
No 204
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.55 E-value=0.0012 Score=61.22 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|.|+|++|+||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 888777654
No 205
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.54 E-value=0.022 Score=59.94 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~ 303 (522)
.+..-++|.|+||+|||+|+..+|..+ |.+++.++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344578999999999999999988754 54666655
No 206
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.54 E-value=0.0016 Score=59.97 Aligned_cols=29 Identities=24% Similarity=0.613 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
.|+|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 58899999999999999999999987764
No 207
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.53 E-value=0.0024 Score=62.35 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=42.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeeh--hhhhhh--------hhchhHHHHHHHHHHHHhhCCcEEE
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECG----TTFFNVSS--ATLASK--------WRGESERMVRCLFDLARAYAPSTIF 335 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg----~~~i~v~~--~~l~~~--------~~g~~e~~l~~~f~~a~~~~p~VL~ 335 (522)
+..-++|.||+|+||||++++++..+. ..++.... ..+... ..|.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 334689999999999999999998762 22222110 000000 0000111235556666667899999
Q ss_pred Eech
Q 009911 336 IDEI 339 (522)
Q Consensus 336 IDEi 339 (522)
+||.
T Consensus 104 lDEp 107 (261)
T 2eyu_A 104 VGEM 107 (261)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9999
No 208
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.51 E-value=0.0018 Score=61.32 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 488999999999999999999999766554
No 209
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.011 Score=53.89 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSATL 307 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~l 307 (522)
+..++|.|++|+||||+++.++..++ ..++.++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 35789999999999999999999884 44555555444
No 210
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.46 E-value=0.0012 Score=60.20 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeehhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT---TFFNVSSAT 306 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~~~ 306 (522)
-|+|.|+||+||||+++.++..++. .+..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 5899999999999999999999862 344444433
No 211
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0018 Score=62.85 Aligned_cols=32 Identities=34% Similarity=0.621 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
..|.|.|++|+||||+++.+|..+|.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 47999999999999999999999999887754
No 212
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.42 E-value=0.023 Score=59.63 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeeh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSS 304 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~ 304 (522)
.+..-++|.|+||+|||+|+..+|... |.+++.++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 444568999999999999999987654 456666553
No 213
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.42 E-value=0.0018 Score=60.15 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|.|+|++||||||+++.++..+|.+++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 5789999999999999999999998887654
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.42 E-value=0.0025 Score=58.39 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
-|.|.|++|+||||+++.++..+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999999 98887653
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.42 E-value=0.009 Score=55.78 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeehhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECG----TTFFNVSSATL 307 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg----~~~i~v~~~~l 307 (522)
+.-++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34688999999999999999999774 45777765544
No 216
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.39 E-value=0.013 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+++++.+|+|+|||.++-.++..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999988877654
No 217
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0016 Score=60.50 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.+.|.|++|+||||+++.++. +|.+++..+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 578999999999999999998 888876543
No 218
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.36 E-value=0.0025 Score=58.91 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|.|.|++|+||||+++.+|..+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998887654
No 219
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.36 E-value=0.021 Score=56.69 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeeh
Q 009911 244 TEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSS 304 (522)
Q Consensus 244 ~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~ 304 (522)
+.+++.+.+.+...+...... .....+..++|+|++|+||||++..+|..+ |..+..+++
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~~-~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADKW-QEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGGS-CCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCcccc-cccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 445555555554433221111 112344679999999999999999998765 445555543
No 220
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.36 E-value=0.0023 Score=59.03 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-GTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-g~~~i~v~ 303 (522)
.-|+|.|++|+||||+++.++..+ |.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 468999999999999999999998 57777654
No 221
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.34 E-value=0.083 Score=49.10 Aligned_cols=60 Identities=17% Similarity=-0.005 Sum_probs=32.2
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcCh--hhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMP--EYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~--~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.+|+|+.-.+.+.+.|.+.....+..- +.+.... ..+.+++.+|+|+|||..+-..+-..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHh
Confidence 346666555666666655322111000 0011111 12479999999999998766555443
No 222
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.32 E-value=0.05 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.291 Sum_probs=17.9
Q ss_pred ceEEEEcCCCCcHHHH-HHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLL-AKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~L-AraiA~~l 295 (522)
+++++.+|+|+|||.. +-.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 5799999999999987 33444433
No 223
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.28 E-value=0.0033 Score=60.33 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
..+.|.||+|+||||+++.||..+|..++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3789999999999999999999999877554
No 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.25 E-value=0.031 Score=64.27 Aligned_cols=44 Identities=32% Similarity=0.319 Sum_probs=34.5
Q ss_pred ccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 009911 240 VAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 240 i~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~ 294 (522)
.+|.+..+..|.+.+... ...+-|.|+|+.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 489888888888876421 11347899999999999999999864
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.22 E-value=0.0021 Score=64.90 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
+-|+|.||+|+|||+|+..||+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4689999999999999999999999888887654
No 226
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.22 E-value=0.0026 Score=58.58 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
..|.|.|++|+||||+++.++.. |.+++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 47899999999999999999998 88777644
No 227
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.21 E-value=0.005 Score=64.19 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
+.-|+|+|+||+||||+|+.++..++..++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 35688999999999999999999998766543
No 228
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.21 E-value=0.0042 Score=60.04 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
...|.|.||+|+||||+++.||..+|..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468899999999999999999999987664
No 229
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.076 Score=42.28 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=55.5
Q ss_pred ccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009911 4 TNSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAER 77 (522)
Q Consensus 4 ~~~~~~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i~~~~ 77 (522)
++.+....+-++.|-+.-..|||+.|+.+|..+++.+...+..-.|+..+..+. +.+.+=++....|-.-+
T Consensus 7 ~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~---~k~~eYl~RAE~Lk~~l 77 (85)
T 2v6x_A 7 GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIR---AKFTEYLNRAEQLKKHL 77 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 356888899999999999999999999999999999999998888888776554 44444444444444433
No 230
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.09 E-value=0.023 Score=64.00 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=34.7
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChh--hhhccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPE--YFQGIRRPWKGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~--~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+++.-...+.+.|.....+|..... +...+ .....+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l-~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY-QNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH-HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH-hCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456665555566666555544432211 11111 11247999999999999987777554
No 231
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.09 E-value=0.0039 Score=57.71 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.-|+|.|+||+||||+++.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 468999999999999999999998764
No 232
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.08 E-value=0.0017 Score=60.47 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTF 299 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~ 299 (522)
.-|+|.|++|+||||+++.++..++..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999886543
No 233
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.05 E-value=0.0039 Score=64.04 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=42.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeehh-hhh--h--hhh-----chhHHHHHHHHHHHHhhCCcEEE
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECG----TTFFNVSSA-TLA--S--KWR-----GESERMVRCLFDLARAYAPSTIF 335 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg----~~~i~v~~~-~l~--~--~~~-----g~~e~~l~~~f~~a~~~~p~VL~ 335 (522)
+...++|+||+|+||||++++++..+. ..++.+... .+. . .+. |.....+...+..+....|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 334689999999999999999998763 233322211 000 0 000 00111234455555567899999
Q ss_pred Eech
Q 009911 336 IDEI 339 (522)
Q Consensus 336 IDEi 339 (522)
+||+
T Consensus 215 ldE~ 218 (372)
T 2ewv_A 215 VGEM 218 (372)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9999
No 234
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.04 E-value=0.0041 Score=62.09 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
+-++|.||+|+|||+|+..+|..++..++.++.-
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 4688999999999999999999999888887654
No 235
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.04 E-value=0.0036 Score=58.73 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.-|.|.|++|+||||+++.++. +|.+++..+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 3688999999999999999998 888776653
No 236
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.03 E-value=0.05 Score=49.96 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr 289 (522)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 589999999999997544
No 237
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.02 E-value=0.054 Score=54.03 Aligned_cols=70 Identities=9% Similarity=-0.014 Sum_probs=36.9
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChh--hhhccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEeeh
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPE--YFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC-----GTTFFNVSS 304 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~--~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~l-----g~~~i~v~~ 304 (522)
.+|+++.-.+.+.+.|.+.....+...+ .........+++++.+|+|+|||+.+-..+-.+ +..++.+.+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 3456665555566665554322111100 011111112489999999999999876655443 444555443
No 238
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.00 E-value=0.038 Score=52.44 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=17.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA 292 (522)
+.+++.||+|||||+++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 479999999999998766654
No 239
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.00 E-value=0.0059 Score=56.77 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
+.-++|+||+|+||||+++.++..++.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 357899999999999999999999853
No 240
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.97 E-value=0.039 Score=57.92 Aligned_cols=36 Identities=25% Similarity=0.156 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
.+..-++|.|+||+|||++|..+|... |.+++.++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 344569999999999999999987665 566666653
No 241
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.97 E-value=0.0022 Score=59.61 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
.-|+|.|++|+||||+++.++..++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999998743
No 242
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.97 E-value=0.0043 Score=58.12 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.|.|+|++|+|||++++.++..+|.+++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 6899999999999999999999998877654
No 243
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.93 E-value=0.0066 Score=57.85 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
...|.|.|++|+||||+++.++..+|.+++..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 346899999999999999999999998776543
No 244
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.89 E-value=0.0045 Score=62.68 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
.-|+|.||+|+|||+||+.||..++..++..+.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 3688999999999999999999999877776643
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.87 E-value=0.0049 Score=61.65 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
-|+|.||+|+|||+|+..+|..++..++..+.-
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 578999999999999999999999888777654
No 246
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.87 E-value=0.005 Score=59.38 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.-|.|.|++|+||||+|+.|+..+|.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 468899999999999999999999976
No 247
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.81 E-value=0.12 Score=55.20 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSATL 307 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~l 307 (522)
.-|+|+|.||+||||+++.+|..++ .....++...+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 3689999999999999999999984 44445565544
No 248
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.78 E-value=0.034 Score=60.75 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+.++++|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 479999999999999988876554
No 249
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.78 E-value=0.061 Score=50.91 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr 289 (522)
+.+++.+|+|+|||..+-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 479999999999998643
No 250
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.77 E-value=0.026 Score=61.69 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=32.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATL 307 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l 307 (522)
.-|+|+|.+|+||||++++++..+ |.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 468999999999999999999999 999999876554
No 251
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.76 E-value=0.0063 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
-++|.||+|+||||+++.++..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 5789999999999999999987654
No 252
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.76 E-value=0.0043 Score=57.68 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-GTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-g~~~i~v~ 303 (522)
.-+.|.|++|+||||+++.++..+ +..++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 458899999999999999999987 66655544
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.75 E-value=0.0064 Score=55.41 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||+|+|||||++.++..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998864
No 254
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.74 E-value=0.00056 Score=71.81 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEee-cCCCCCccHHHHh--hcccccccCCCCHH-HHHHHH
Q 009911 352 HESSRRVKSELLVQVDGVNNTGTNEDGSRKIVMVLAA-TNFPWDIDEALRR--RLEKRIYIPLPNFE-SRKELI 421 (522)
Q Consensus 352 ~~~~~~~~~~Ll~~ld~~~~~~~~~~~~~~~VivIat-tn~p~~ld~aL~r--Rf~~~i~i~~Pd~~-~R~~Il 421 (522)
.....++++.|+..||++..... + +++ ||.++.||++|++ ||++.|+|++|+.. .|.+|+
T Consensus 125 ~~~e~rvl~~LL~~~dg~~~~~~--------v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 125 DVAEERILDALLPPAKNQWGEVE--------N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHhhccccccc--------c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 33456788888888888764321 3 444 9999999999999 99999999999987 677765
No 255
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.73 E-value=0.0052 Score=60.50 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~ 303 (522)
.-|.|+|++|+||||+++.++ .+|.+++..+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 468999999999999999999 6888776543
No 256
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.73 E-value=0.069 Score=50.31 Aligned_cols=54 Identities=24% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChh--hhhccCCCCceEEEEcCCCCcHHHHHH
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPE--YFQGIRRPWKGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~--~~~~~~~~~~~vLL~GppGtGKT~LAr 289 (522)
.+|+++.-...+.+.|.+.....+..-+ ..... ...+++++.+|+|+|||..+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~-~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLA-LQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEEeCCCCcHHHHHH
Confidence 4577776666777766654322111100 01111 122589999999999998543
No 257
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.73 E-value=0.08 Score=49.81 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.1
Q ss_pred ceEEEEcCCCCcHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLA 288 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LA 288 (522)
+++++.+|+|+|||..+
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 58999999999999863
No 258
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.72 E-value=0.0044 Score=61.12 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-GTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-g~~~i~v~ 303 (522)
.-|+|.|+||+||||+++.++..+ +..++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 368999999999999999999974 65555443
No 259
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.72 E-value=0.051 Score=54.49 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.++.-++|+|++|+||||++..+|..+ +..+..++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344678999999999999999998876 44555444
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.67 E-value=0.041 Score=55.37 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344678999999999999999999876
No 261
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.65 E-value=0.0025 Score=64.38 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehhh-hh-----hh--hhchhHHHHHHHHHHHHhhCCcEEEEechh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSAT-LA-----SK--WRGESERMVRCLFDLARAYAPSTIFIDEID 340 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~~-l~-----~~--~~g~~e~~l~~~f~~a~~~~p~VL~IDEiD 340 (522)
..++|.||+|+|||||+++++..+.. ..+.+.... +. .. +........+..+..+....|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 47999999999999999999988742 233333221 10 00 110011224455566667789999999984
No 262
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.65 E-value=0.047 Score=62.34 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
.-++|+||.|+||||+.+.++..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHH
Confidence 35899999999999999998743
No 263
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.56 E-value=0.038 Score=51.82 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr 289 (522)
+++++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 489999999999998543
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.55 E-value=0.0065 Score=56.70 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
.++|+|.||+|+|||+||..++...+ .++..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 46899999999999999999999876 666655443
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.54 E-value=0.0078 Score=55.95 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG--TTFFN 301 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg--~~~i~ 301 (522)
.-+.|.||+|+|||||++.|+..++ ..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4688999999999999999999987 44443
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.53 E-value=0.028 Score=58.52 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCcccccCcHHHHHHHHHHHhccCcChhhhhccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEeehh-hhh-h
Q 009911 235 VRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGT---TFFNVSSA-TLA-S 309 (522)
Q Consensus 235 ~~~~di~G~~~vk~~L~e~v~~pl~~~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA~~lg~---~~i~v~~~-~l~-~ 309 (522)
..++++.-....+..|...+. .+..-++|.||+|+||||++++++..+.. .++.+.-. +.. .
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~ 210 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDID 210 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCS
T ss_pred CCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccC
Confidence 445555444444445555421 12235889999999999999999998843 23332211 110 0
Q ss_pred -----hhhchhHHHHHHHHHHHHhhCCcEEEEech
Q 009911 310 -----KWRGESERMVRCLFDLARAYAPSTIFIDEI 339 (522)
Q Consensus 310 -----~~~g~~e~~l~~~f~~a~~~~p~VL~IDEi 339 (522)
.............+..+....|.+|++.|+
T Consensus 211 ~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 211 GIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 000011111233344444567999999985
No 267
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.46 E-value=0.009 Score=61.76 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
+-|+|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 468899999999999999999999988777654
No 268
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.45 E-value=0.0083 Score=56.05 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
++.-+.|.||+|+|||||++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3456889999999999999999998753
No 269
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.44 E-value=0.038 Score=58.93 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
.+..|+|+|++|+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34679999999999999999999776 666665554
No 270
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.44 E-value=0.0096 Score=55.55 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=27.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 68899999999999999999999999985
No 271
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.43 E-value=0.0075 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|+||||+++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999887
No 272
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.43 E-value=0.057 Score=50.28 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.9
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKA 290 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAra 290 (522)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4799999999999986433
No 273
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.42 E-value=0.081 Score=53.42 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.+..-++|.|+||+|||+|+..+|..+ +.++..++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 444569999999999999999998764 55665554
No 274
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.41 E-value=0.094 Score=56.12 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAV 291 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LArai 291 (522)
+...++|.||+|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3357999999999999999994
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.39 E-value=0.01 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||+|+|||||++.++..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999999864
No 276
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.37 E-value=0.0087 Score=55.79 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999885
No 277
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.31 E-value=0.097 Score=56.02 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh----hhhhh----------h-----hc---------hhHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA----TLASK----------W-----RG---------ESERM 318 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~----~l~~~----------~-----~g---------~~e~~ 318 (522)
+..-++|.||+|+|||+|++.++... |..++.+... .+... + .. .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 34568999999999999999998765 4444443321 11100 0 00 12334
Q ss_pred HHHHHHHHHhhCCcEEEEechhhhh
Q 009911 319 VRCLFDLARAYAPSTIFIDEIDSLC 343 (522)
Q Consensus 319 l~~~f~~a~~~~p~VL~IDEiD~l~ 343 (522)
.+.++..+....|.+|+||=+..|.
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEcChHHHH
Confidence 5556666677889999999665554
No 278
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.28 E-value=0.059 Score=51.15 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr 289 (522)
+++++.+|+|+|||..+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 489999999999998643
No 279
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.20 E-value=0.099 Score=59.82 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~ 293 (522)
-++|+||.|+||||+.+.++-
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999853
No 280
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.20 E-value=0.022 Score=52.68 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
.-+.|.|++|+||||+++.++..+ +..++.++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 468899999999999999999876 5566555433
No 281
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.19 E-value=0.16 Score=48.11 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=15.0
Q ss_pred ceEEEEcCCCCcHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLA 288 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LA 288 (522)
+++++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 47999999999999864
No 282
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.19 E-value=0.011 Score=54.14 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg 296 (522)
-+.|.||+|+|||||++.++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999998874
No 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=95.16 E-value=0.077 Score=42.14 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009911 6 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQL 73 (522)
Q Consensus 6 ~~~~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i 73 (522)
.+....+-++.|-++-..|||+.|+.+|+.+|+.+.+.+..-.|+..+. .+++.+.+=.+....|
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~---~ir~K~~eY~~RAE~L 71 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVART---AYEQMINEYKKRISYL 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999998877776543 4667777666666655
No 284
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.15 E-value=0.012 Score=54.67 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
+-+.|.||+|+|||||++.++..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999998764
No 285
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.11 E-value=0.077 Score=52.56 Aligned_cols=69 Identities=17% Similarity=0.102 Sum_probs=43.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhhhh-------hhhh-------------chhHHHHHHHHHHHH
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSATLA-------SKWR-------------GESERMVRCLFDLAR 327 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~l~-------~~~~-------------g~~e~~l~~~f~~a~ 327 (522)
+.-+++.|++|+||||++..+|..+ |..+..+++.... ..+. ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578889999999999999999777 5555555442110 0000 112233445566665
Q ss_pred hhCCcEEEEech
Q 009911 328 AYAPSTIFIDEI 339 (522)
Q Consensus 328 ~~~p~VL~IDEi 339 (522)
.....+|+||=.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 455679999875
No 286
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=95.08 E-value=0.16 Score=43.08 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009911 6 SLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTL-DDPLIRAKWMNVKKALLEETDVVKQLDAERRA 79 (522)
Q Consensus 6 ~~~~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~~e~~~~~~i~~~~~~ 79 (522)
.|....+-++.|-++-..|||+.|+.+|..+++.+...+..- .++..+..+ ++.+.+=++..+.|-.-++.
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~l---r~K~~eYl~RAE~LK~~l~~ 85 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSI---RAKCTEYLDRAEKLKEYLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 477888889999999999999999999999999988888765 566656554 45555555555555555543
No 287
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=95.06 E-value=0.18 Score=40.27 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009911 9 GLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRA 79 (522)
Q Consensus 9 ~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i~~~~~~ 79 (522)
...+-++.|-++-..|||+.|+.+|+.+++.+...+..-.|+..+.. +++.+.+=.+-...|.+-+..
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~---lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN---LREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999988888876554 555666666666666555544
No 288
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.03 E-value=0.1 Score=57.32 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHH-HHHHh--CCcEEEeehhh
Q 009911 273 GVLMFGPPGTGKTLLAKA-VATEC--GTTFFNVSSAT 306 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAra-iA~~l--g~~~i~v~~~~ 306 (522)
-.||+||||||||+++-. |+..+ +..++.+..++
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 578999999999975444 44333 66676666554
No 289
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.01 E-value=0.079 Score=56.14 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.+.-++|.|++|+|||||++.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34568899999999999999999876
No 290
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.00 E-value=0.26 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=18.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
+++++.+|+|+|||..+-..+-.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999876554443
No 291
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=95.00 E-value=0.19 Score=40.72 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009911 7 LVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQLDAERRA 79 (522)
Q Consensus 7 ~~~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i~~~~~~ 79 (522)
+....+-++.|-++-..|||+.|+.+|..+++.+...+..-.|+..+.. +++.+.+=++..+.|-..++.
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~---l~~K~~eYl~RAE~LK~~l~~ 81 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCV---LRTKISGYMDRAENIKKYLDQ 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 5677888999999999999999999999999999999988888886654 455555555555555555544
No 292
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.98 E-value=0.034 Score=55.36 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
++.-+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34578899999999999999999887
No 293
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.96 E-value=0.035 Score=55.23 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
++.-+.|.||+|+||||+++.+|..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999886
No 294
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.87 E-value=0.036 Score=51.30 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
+-.+++||.|+|||+.+-.++..+ |..++.+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 457889999999999988888776 55555543
No 295
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.85 E-value=0.32 Score=48.79 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA 292 (522)
+++++.+|+|+|||..+-..+
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 689999999999998655433
No 296
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.85 E-value=0.022 Score=53.06 Aligned_cols=26 Identities=19% Similarity=0.472 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.+-+.|.||+|+|||||+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998875
No 297
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.85 E-value=0.23 Score=47.36 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.6
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr 289 (522)
+++++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 589999999999998643
No 298
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.82 E-value=0.077 Score=52.45 Aligned_cols=70 Identities=24% Similarity=0.214 Sum_probs=43.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehhh----hh---hhhh-------------chhHHHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSAT----LA---SKWR-------------GESERMVRCLFDLA 326 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~~----l~---~~~~-------------g~~e~~l~~~f~~a 326 (522)
++..+.++|++|+||||++..+|..+ +..+..+++.. .. ..+. .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44578888999999999999999776 44454444211 00 0000 01123335556666
Q ss_pred HhhCCcEEEEech
Q 009911 327 RAYAPSTIFIDEI 339 (522)
Q Consensus 327 ~~~~p~VL~IDEi 339 (522)
....+.+|+||+-
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 5567789999997
No 299
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.80 E-value=0.6 Score=47.30 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKA 290 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAra 290 (522)
+.+++.+|+|+|||+.+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 4799999999999987443
No 300
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.80 E-value=0.02 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||.|+|||||+++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999999987
No 301
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.79 E-value=0.017 Score=54.98 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 68899999999999999999999999876
No 302
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.75 E-value=0.008 Score=55.82 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
-|.|.|++|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999853
No 303
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=94.75 E-value=0.15 Score=40.50 Aligned_cols=66 Identities=15% Similarity=0.023 Sum_probs=52.6
Q ss_pred cchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009911 5 NSLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRAKWMNVKKALLEETDVVKQL 73 (522)
Q Consensus 5 ~~~~~~~~~~~~~r~~a~~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~e~~~~~~i 73 (522)
+.+....+-++.|-++--.|||+.|+.||+.+|+.+...+..-.|+..+. .+++.+.+=.+-...|
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~---~ir~K~~eY~~RAE~L 79 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAA---IYEQMINEYKRRIEVL 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHH
Confidence 44678889999999999999999999999999999999998877776443 3566666655555544
No 304
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.74 E-value=0.019 Score=53.43 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999875
No 305
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.70 E-value=0.023 Score=54.26 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEe
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNV 302 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v 302 (522)
.+-|.|+||+||||+|+.|+..++.+++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 577899999999999999999999887654
No 306
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.67 E-value=0.2 Score=49.19 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~ 305 (522)
+++++.+|+|+|||..+-..+-..+...+.+.+.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~ 65 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPT 65 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCC
Confidence 4899999999999998777666666666655543
No 307
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.64 E-value=0.012 Score=62.85 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=42.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehhh-hhh---hh--------hchhHHHHHHHHHHHHhhCCcEEEEe
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSAT-LAS---KW--------RGESERMVRCLFDLARAYAPSTIFID 337 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~~-l~~---~~--------~g~~e~~l~~~f~~a~~~~p~VL~ID 337 (522)
.+++|.||+|+||||++++++..+.. ..+.+.... +.- .+ .+.....+..++..+....|.+|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 47999999999999999999988742 344443221 110 00 00111123444555556789999999
Q ss_pred ch
Q 009911 338 EI 339 (522)
Q Consensus 338 Ei 339 (522)
|+
T Consensus 341 Ei 342 (511)
T 2oap_1 341 EV 342 (511)
T ss_dssp CC
T ss_pred Cc
Confidence 98
No 308
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.62 E-value=0.18 Score=56.68 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
.-++|+||.|+||||+.+.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45889999999999999999865
No 309
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.60 E-value=0.16 Score=51.59 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA 292 (522)
+++++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 479999999999998655443
No 310
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.58 E-value=0.047 Score=55.66 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
++.-++|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44578899999999999999999886
No 311
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.58 E-value=0.026 Score=53.64 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEE
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECG--TTFFN 301 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg--~~~i~ 301 (522)
..-|+|.|++|+||||+++.++..++ ..++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 34688999999999999999999986 34443
No 312
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.52 E-value=0.25 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA 292 (522)
+++++.+|+|+|||..+-..+
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHH
Confidence 579999999999997665443
No 313
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.52 E-value=0.021 Score=53.72 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|+|||||++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999987
No 314
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.47 E-value=0.092 Score=54.89 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeehhhhhhh-------h---------h----chhHHHHHHHHHH
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSSATLASK-------W---------R----GESERMVRCLFDL 325 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~~~l~~~-------~---------~----g~~e~~l~~~f~~ 325 (522)
+++.|+++|++|+||||++-.+|..+ |..+..+++...... + . ......+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999998766 666666655421100 0 0 0113333555666
Q ss_pred HHhhCCcEEEEech
Q 009911 326 ARAYAPSTIFIDEI 339 (522)
Q Consensus 326 a~~~~p~VL~IDEi 339 (522)
++...-.+|+||=.
T Consensus 179 ~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 179 AKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEECC
Confidence 65445579999875
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.37 E-value=0.023 Score=54.32 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
-+-|.||.|+|||||++.|+..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 57899999999999999999998754
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.35 E-value=0.026 Score=53.33 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
..-+.|.||+|+|||||+++++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34688999999999999999999875
No 317
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.34 E-value=0.19 Score=55.79 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=37.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcC--hhhhhccCCCCceEEEEcCCCCcHHHHHHHHH-HH---hCCcEEEeeh
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWM--PEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVA-TE---CGTTFFNVSS 304 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~--~~~~~~~~~~~~~vLL~GppGtGKT~LAraiA-~~---lg~~~i~v~~ 304 (522)
+.+|+++.-.+.+++.+.......+.. .+.+...-....++++.||+|+|||+.+-..+ .. -+...+.+.+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345666655555555554422111111 11222211224689999999999999885433 22 2455555543
No 318
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.33 E-value=0.19 Score=52.37 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
++..++|.|++|+||||++..+|..+ +..+..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 45678899999999999999999877 44454444
No 319
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.30 E-value=0.011 Score=58.46 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSAT 306 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~ 306 (522)
-|.|.||+|+||||+++.++..++ ..+..++...
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 588999999999999999999876 3344444444
No 320
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.29 E-value=0.089 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..|.|+|+||+|||||+..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999876
No 321
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.26 E-value=0.026 Score=52.12 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999887
No 322
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.26 E-value=0.29 Score=48.24 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=31.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhccCcC--hhhhhc-cCCCCceEEEEcCCCCcHHHHH
Q 009911 234 GVRWDDVAGLTEAKRLLEEAVVLPLWM--PEYFQG-IRRPWKGVLMFGPPGTGKTLLA 288 (522)
Q Consensus 234 ~~~~~di~G~~~vk~~L~e~v~~pl~~--~~~~~~-~~~~~~~vLL~GppGtGKT~LA 288 (522)
..+|+++.-...+.+.|.......+.. ...+.. ...+.+++|+.+|+|+|||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 356777766677777666533211110 001111 1223468999999999999753
No 323
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.20 E-value=0.027 Score=59.27 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..++|+|++|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 368999999999999999887654
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.19 E-value=0.025 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-HHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA-TECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA-~~lg 296 (522)
.-+.|.||+|+|||||++.++ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 458899999999999999999 8763
No 325
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.18 E-value=0.34 Score=49.10 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.8
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr 289 (522)
+.+++.+|+|+|||..+-
T Consensus 65 ~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCchHHHHHH
Confidence 589999999999998753
No 326
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.15 E-value=0.26 Score=50.62 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEeehh-hhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC----GTTFFNVSSA-TLA 308 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l----g~~~i~v~~~-~l~ 308 (522)
++||.+|+|+|||..+-.++... +..++.+.+. .+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~ 65 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLV 65 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 89999999999999888876654 5566666554 443
No 327
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.08 E-value=0.037 Score=51.36 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHh--CCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKT-LLAKAVATEC--GTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT-~LAraiA~~l--g~~~i~v~~~ 305 (522)
+=.+++||.|+||| .|.+++.+.. +..++.+.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45789999999999 7888887654 5667766543
No 328
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.07 E-value=0.13 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..++|+||+|+|||+|++.|++.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 479999999999999999998875
No 329
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.05 E-value=0.043 Score=59.54 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeehhhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG----TTFFNVSSATLA 308 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg----~~~i~v~~~~l~ 308 (522)
..|+|+|++|+||||+|++++..++ .+++.++...+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 4688999999999999999999986 678888765543
No 330
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.04 E-value=0.033 Score=55.50 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTTF 299 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~~ 299 (522)
+...+.|+||+|+|||||++.|+..+.-.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 345789999999999999999999984444
No 331
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.02 E-value=0.2 Score=56.18 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-++|+||.|+||||+.+.++...
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 458899999999999999998653
No 332
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.00 E-value=0.074 Score=55.59 Aligned_cols=23 Identities=39% Similarity=0.338 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
+-.++.|+||||||+++..++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 46789999999999999888753
No 333
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.00 E-value=0.027 Score=51.62 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEeehhh
Q 009911 274 VLMFGPPGTGKTLLAKAVATECGTTFFNVSSAT 306 (522)
Q Consensus 274 vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~~ 306 (522)
+|++|++|+|||++|..++.. +.+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 87877776543
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.99 E-value=0.031 Score=55.62 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 335
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.98 E-value=0.043 Score=49.95 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTTFFN 301 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~~i~ 301 (522)
..++|||.|++|+|||++|.++... |..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 3469999999999999999999874 655543
No 336
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.94 E-value=0.31 Score=49.01 Aligned_cols=18 Identities=39% Similarity=0.353 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr 289 (522)
+++++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998743
No 337
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.92 E-value=0.00074 Score=71.34 Aligned_cols=84 Identities=17% Similarity=0.294 Sum_probs=47.0
Q ss_pred HHHHHHHhhhcCCCCCCCCCCcceEEEEeecCCCCCccHHHHh--hccc--ccccCCCC--HHHHHHHHHHHHccCCCCC
Q 009911 359 KSELLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRR--RLEK--RIYIPLPN--FESRKELIKINLKTVEVSK 432 (522)
Q Consensus 359 ~~~Ll~~ld~~~~~~~~~~~~~~~VivIattn~p~~ld~aL~r--Rf~~--~i~i~~Pd--~~~R~~Ilk~~l~~~~l~~ 432 (522)
...++..++..... ....++|++|||.++.++++++| ||++ .+++|.|+ .++|.+|++.+..
T Consensus 173 ~~~ll~~l~~~~~~------~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------ 240 (456)
T 2c9o_A 173 DPSIFESLQKERVE------AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------ 240 (456)
T ss_dssp CHHHHHHHHHTTCC------TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH------
T ss_pred hHHHHHHHhhccCC------CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH------
Confidence 35566666532221 22447778999999999999976 9987 66777774 4677777764432
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHH
Q 009911 433 DVDIDEVARRTDGYSGDDLTNVCRD 457 (522)
Q Consensus 433 ~~dl~~LA~~t~Gys~~dI~~lv~~ 457 (522)
.|++.++..++| |+||.++|..
T Consensus 241 -~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 241 -HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp -HHHHHTC-----------------
T ss_pred -HHHHHHHHhCCC--hhHHHHHHhh
Confidence 268899999999 9999999954
No 338
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.92 E-value=0.15 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
..|+|+|.||+||||+++.++..++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999875
No 339
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.82 E-value=0.38 Score=48.90 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=14.4
Q ss_pred ceEEEEcCCCCcHHHH
Q 009911 272 KGVLMFGPPGTGKTLL 287 (522)
Q Consensus 272 ~~vLL~GppGtGKT~L 287 (522)
+.+++.+|+|+|||..
T Consensus 53 ~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 53 RDLMACAQTGSGKTAA 68 (417)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CCEEEEcCCCCHHHHH
Confidence 5899999999999974
No 340
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.81 E-value=0.47 Score=49.64 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.8
Q ss_pred CceEEEEcCCCCcHHHHH
Q 009911 271 WKGVLMFGPPGTGKTLLA 288 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LA 288 (522)
.+.+|+.||+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 468999999999999864
No 341
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.77 E-value=0.17 Score=50.90 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.|+||+|||||+++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999775
No 342
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.76 E-value=0.041 Score=51.70 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeeh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSS 304 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~ 304 (522)
.|-|+|..||||||+++.++. +|.+++..+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 688999999999999999998 9998887654
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.76 E-value=0.085 Score=52.06 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
+.-|.|.|++|+|||||++.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 346889999999999999999998853
No 344
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.74 E-value=0.36 Score=46.37 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.8
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKA 290 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAra 290 (522)
+.+|+.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4799999999999986443
No 345
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.74 E-value=0.32 Score=46.15 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK 289 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr 289 (522)
+++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998543
No 346
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.59 E-value=0.11 Score=57.69 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHH-HHHh--CCcEEEeeh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAV-ATEC--GTTFFNVSS 304 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LArai-A~~l--g~~~i~v~~ 304 (522)
.+++++.||+|+|||+.+-.. ...+ +...+.+.+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 358999999999999987443 2222 445555443
No 347
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.58 E-value=0.04 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
-.+|+||.|+|||+|+++|+-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5789999999999999999988763
No 348
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.55 E-value=0.081 Score=55.37 Aligned_cols=36 Identities=33% Similarity=0.336 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEeehh-hhh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFFNVSSA-TLA 308 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i~v~~~-~l~ 308 (522)
.+||++|+|+|||.++-.++..++..++.+-+. .|.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 699999999999999988888888777777655 444
No 349
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.52 E-value=0.08 Score=49.84 Aligned_cols=31 Identities=10% Similarity=-0.074 Sum_probs=23.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
=.+++|+.|+|||+.+-.++... |..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999888887665 56666554
No 350
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.51 E-value=0.048 Score=54.46 Aligned_cols=27 Identities=15% Similarity=0.020 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 334678999999999999999999874
No 351
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.50 E-value=0.046 Score=54.86 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||+||||||+++.|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578999999999999999999885
No 352
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.46 E-value=0.052 Score=51.59 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-GTTF 299 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-g~~~ 299 (522)
.-|.|.|++|+||||+++.++..+ +..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 468899999999999999999999 4433
No 353
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.43 E-value=0.42 Score=55.24 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA 292 (522)
.-++|+||.|+||||+.+.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 468899999999999999984
No 354
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.25 E-value=0.34 Score=53.79 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHH-HHHH---hCCcEEEeeh
Q 009911 271 WKGVLMFGPPGTGKTLLAKA-VATE---CGTTFFNVSS 304 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAra-iA~~---lg~~~i~v~~ 304 (522)
.+++++.||+|+|||+.+.. +... -+..++.+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 46899999999999998733 3322 2555555543
No 355
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.1 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..|+|.|++|+|||+|+.+++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998653
No 356
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.19 Score=58.67 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~~ 305 (522)
+.+|++||+|+|||+.+-..+... +..++.+.+.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 589999999999999876554443 5555555543
No 357
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.15 E-value=0.055 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+-+.|.|++|+|||||+..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 368899999999999999999876
No 358
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.08 E-value=0.49 Score=50.05 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC--------GTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l--------g~~~i~v~~~ 305 (522)
+++|+.+|+|+|||..+-..+-.. +..++.+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 479999999999999876665444 5555555543
No 359
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.08 E-value=0.047 Score=52.14 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
+..-+.|.||.|+|||||+++|+..+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 334688999999999999999997653
No 360
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.05 E-value=0.058 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.|++|+|||||++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998875
No 361
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.05 E-value=0.77 Score=48.38 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC--------GTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l--------g~~~i~v~~~ 305 (522)
+++|+.+|+|+|||..+-..+-.. +..++.+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 489999999999998876665444 5555655544
No 362
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.99 E-value=0.62 Score=48.21 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=14.6
Q ss_pred ceEEEEcCCCCcHHHH
Q 009911 272 KGVLMFGPPGTGKTLL 287 (522)
Q Consensus 272 ~~vLL~GppGtGKT~L 287 (522)
+.+++.+|+|+|||..
T Consensus 94 ~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 94 RDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCCchHH
Confidence 5899999999999984
No 363
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.97 E-value=0.043 Score=51.44 Aligned_cols=22 Identities=50% Similarity=0.668 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
-+.|.||.|+|||||+++++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999976
No 364
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.94 E-value=0.062 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+.-|.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999887
No 365
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.92 E-value=0.051 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||.|+|||||+++++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999776
No 366
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.91 E-value=0.047 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||.|+|||||+++|+..+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999997653
No 367
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.90 E-value=0.059 Score=57.47 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
..|+|.|.+||||||+++++|..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999985
No 368
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.87 E-value=0.052 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-+.|.||.|+|||||++.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468899999999999999999775
No 369
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.84 E-value=0.028 Score=54.29 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC-GTTFF 300 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l-g~~~i 300 (522)
.-|+|.|++|+||||+++.|+..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 568899999999999999999998 44443
No 370
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.78 E-value=0.058 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.+.|.||+|+|||||++.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999876
No 371
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.70 E-value=0.061 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999976
No 372
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.68 E-value=0.93 Score=48.34 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=15.1
Q ss_pred CceEEEEcCCCCcHHHH
Q 009911 271 WKGVLMFGPPGTGKTLL 287 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~L 287 (522)
.+.+|+.+|+|+|||..
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 46899999999999984
No 373
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.65 E-value=0.059 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.++|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999764
No 374
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.64 E-value=0.058 Score=58.18 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEeehhhh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECG----TTFFNVSSATL 307 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg----~~~i~v~~~~l 307 (522)
...+.|.|++|+|||||+++||..++ ..+..++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 34688999999999999999999985 23444665554
No 375
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.62 E-value=0.06 Score=52.32 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||.|+|||||+++|+..+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999998763
No 376
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.60 E-value=0.81 Score=49.25 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=15.0
Q ss_pred CceEEEEcCCCCcHHHH
Q 009911 271 WKGVLMFGPPGTGKTLL 287 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~L 287 (522)
.+.+|+.+|+|+|||..
T Consensus 60 ~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEEcCCCcHHHHH
Confidence 35899999999999984
No 377
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.58 E-value=0.074 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|++.|++|+|||+|++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 378
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.55 E-value=0.062 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-+.|.||.|+|||||+++|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468899999999999999998765
No 379
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.51 E-value=0.068 Score=54.35 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTTF 299 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~~ 299 (522)
..+.|.||+|+|||||++.|+..+....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999986543
No 380
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.50 E-value=0.054 Score=51.04 Aligned_cols=25 Identities=40% Similarity=0.503 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||.|+|||||+++++..+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999997753
No 381
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.41 E-value=0.077 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..-+.|.||.|+|||||++.|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999986
No 382
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.38 E-value=0.3 Score=50.77 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHH-HHHHH---HhCCcEEEeeh
Q 009911 272 KGVLMFGPPGTGKTLLA-KAVAT---ECGTTFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LA-raiA~---~lg~~~i~v~~ 304 (522)
+.+|+.||+|+|||..+ -++.. .-+...+.+.+
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 58999999999999975 43332 22444544443
No 383
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.37 E-value=0.046 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.+.|.|++|+|||||++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999998874
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.31 E-value=0.16 Score=52.98 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
+..|+|+|++|+||||++..+|..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3579999999999999999999876 345555554
No 385
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.30 E-value=0.065 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||.|+|||||+++|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998776
No 386
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.29 E-value=0.078 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
.-+.|.||.|+|||||++.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999985
No 387
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.24 E-value=0.069 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.289 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..-+.|.||.|+|||||+++|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999876
No 388
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.23 E-value=0.07 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-+.|.||.|+|||||+++|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468899999999999999998765
No 389
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.22 E-value=0.081 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-|.|.|++|+||||+++.++..+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999884
No 390
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.20 E-value=0.13 Score=56.24 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.++++||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999877766553
No 391
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.19 E-value=0.076 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||+++||...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457899999999999999999866
No 392
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.18 E-value=0.071 Score=52.04 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..-+.|.||.|+|||||++.|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998776
No 393
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.17 E-value=0.073 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||.|+|||||+++|+..+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4688999999999999999997763
No 394
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.14 E-value=0.071 Score=51.00 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||.|+|||||++.|+..+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999997753
No 395
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.13 E-value=0.071 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..-+.|.||.|+|||||++.|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998776
No 396
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.12 E-value=0.072 Score=52.20 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||.|+|||||+++|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998765
No 397
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.11 E-value=0.12 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.-|.|.|++|+||||+++.++..++..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 468899999999999999999999864
No 398
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.02 E-value=0.076 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||.|+|||||++.|+..+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4688999999999999999997763
No 399
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.00 E-value=0.076 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||.|+|||||+++|+..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 468899999999999999999765
No 400
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.00 E-value=0.079 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..-+.|.||.|+|||||+++|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999765
No 401
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.00 E-value=0.093 Score=45.79 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|++++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
No 402
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.99 E-value=0.074 Score=54.10 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||+++||...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999999775
No 403
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.94 E-value=0.079 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-+.|.||.|+|||||+++|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33468899999999999999998765
No 404
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.92 E-value=0.4 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
...+.|.|++|+||||++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998765
No 405
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.92 E-value=0.063 Score=54.71 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=42.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEeehh-hhh-----hh--hhc-h-------hHHHHHHHHHHHHhhCCc
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGT--TFFNVSSA-TLA-----SK--WRG-E-------SERMVRCLFDLARAYAPS 332 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~--~~i~v~~~-~l~-----~~--~~g-~-------~e~~l~~~f~~a~~~~p~ 332 (522)
...++|.||+|+|||||+++++..+.. ..+.+... .+. .. +.- . ....++..+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 347999999999999999999988742 23333311 110 00 000 0 111234555555566788
Q ss_pred EEEEechh
Q 009911 333 TIFIDEID 340 (522)
Q Consensus 333 VL~IDEiD 340 (522)
+++++|+.
T Consensus 255 ~~l~~e~r 262 (361)
T 2gza_A 255 RILLAELR 262 (361)
T ss_dssp EEEESCCC
T ss_pred EEEEcCch
Confidence 99999883
No 406
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.85 E-value=0.11 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..|+|.|++|+|||+|+.+++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998764
No 407
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.84 E-value=0.1 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|+.++....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999998643
No 408
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.83 E-value=0.095 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||.++||...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457899999999999999999776
No 409
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.80 E-value=0.076 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-|.|.|++|+||||+++.++..+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458889999999999999999988
No 410
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.79 E-value=0.097 Score=53.72 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||+++||...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 457899999999999999999776
No 411
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.79 E-value=0.096 Score=53.35 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||.++||...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 457899999999999999999765
No 412
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.79 E-value=0.082 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.-+.|.||.|+|||||++.|+..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999999999999999998763
No 413
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.78 E-value=0.075 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~ 293 (522)
.|+|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 414
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.73 E-value=0.097 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|++.|++|+|||+|++.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998653
No 415
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.71 E-value=0.1 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||.++||...
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 457899999999999999999765
No 416
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.68 E-value=0.3 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
...|.|.|+||+|||||.++++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999865
No 417
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.67 E-value=0.084 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||.++||...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 457899999999999999999776
No 418
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.67 E-value=0.094 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~ 293 (522)
.|+|.|++|+|||+|+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 419
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.66 E-value=0.11 Score=45.41 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|++++....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998653
No 420
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.65 E-value=0.11 Score=45.20 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999864
No 421
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.63 E-value=0.087 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||.|+|||||++.|+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999875
No 422
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.57 E-value=0.25 Score=58.86 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 269 RPWKGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 269 ~~~~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
.+..-+.|+||+|+|||||++.+...+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3445799999999999999999998763
No 423
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.53 E-value=0.083 Score=53.57 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||+++||...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 467899999999999999999765
No 424
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.52 E-value=0.11 Score=45.80 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999754
No 425
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.50 E-value=0.12 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|++++....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 79999999999999999998654
No 426
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.47 E-value=0.1 Score=45.91 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|++++...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 7999999999999999998743
No 427
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.44 E-value=0.19 Score=54.18 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEeehhhh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG---TTFFNVSSATL 307 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg---~~~i~v~~~~l 307 (522)
..|+|+|++|+||||+++.++..++ .++..++...+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4688999999999999999999874 45666665544
No 428
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.43 E-value=0.98 Score=46.04 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=16.3
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAV 291 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LArai 291 (522)
+++++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 48999999999999954443
No 429
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.37 E-value=0.12 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
-.|++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999999865
No 430
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.37 E-value=0.12 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999764
No 431
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.32 E-value=0.26 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+++||++|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 478999999999999987777654
No 432
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.27 E-value=0.087 Score=51.21 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..-+.|.||.|+|||||++.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999875
No 433
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.21 E-value=0.12 Score=45.22 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999999754
No 434
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.17 E-value=0.94 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.9
Q ss_pred ceEEEEcCCCCcHHHHHH-HHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAK-AVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAr-aiA~~ 294 (522)
+++|+.+|+|+|||..+- .+...
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCEEEECCCCccHHHHHHHHHHHH
Confidence 689999999999998743 34444
No 435
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.17 E-value=0.15 Score=44.93 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~ 293 (522)
...|+|.|++|+|||+|++++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999975
No 436
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.14 E-value=0.13 Score=44.84 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
-.|+|.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999863
No 437
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.14 E-value=0.13 Score=44.76 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
No 438
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.13 E-value=0.19 Score=51.39 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEeeh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVSS 304 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~~ 304 (522)
..++++.|++|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4589999999999999999998765 555665553
No 439
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.12 E-value=0.13 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999864
No 440
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.12 E-value=0.64 Score=44.17 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC---GTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l---g~~~i~v~ 303 (522)
.=.+++|+.|+|||+.+-..+... |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 346789999999998666655444 44555444
No 441
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.08 E-value=0.12 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
-.+|+||.|+|||++..||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999998665
No 442
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.08 E-value=0.12 Score=46.13 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|+++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 443
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.03 E-value=0.13 Score=44.66 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|+..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 444
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.99 E-value=0.13 Score=44.91 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999863
No 445
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.96 E-value=0.12 Score=45.19 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA 292 (522)
.|+|.|++|+|||+|++.++
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 446
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.94 E-value=0.12 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|+++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999863
No 447
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.93 E-value=0.12 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..-+.|.||+|||||||+++|+...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3468899999999999999999653
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.93 E-value=0.16 Score=48.06 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGT 297 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~ 297 (522)
.-|.|.|++|+||||+++.++..++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46788899999999999999988754
No 449
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.87 E-value=0.21 Score=56.20 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.++|.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999877766553
No 450
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.86 E-value=0.14 Score=45.28 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
-.|+|.|++|+|||+|++++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999998743
No 451
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.79 E-value=0.14 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..|+|.|++|+|||+|++++....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999998654
No 452
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=90.78 E-value=0.82 Score=52.84 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEeehh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE---CGTTFFNVSSA 305 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~---lg~~~i~v~~~ 305 (522)
+++|+.+|+|+|||.++...... -+...+.+.+.
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~Pt 138 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 138 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECCh
Confidence 48999999999999987543332 25566666553
No 453
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.71 E-value=0.088 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|||||||.++||...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 457899999999999999999765
No 454
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.71 E-value=0.15 Score=47.28 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECG 296 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg 296 (522)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998864
No 455
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.68 E-value=0.14 Score=48.12 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999887
No 456
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.68 E-value=0.14 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999875
No 457
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.67 E-value=0.17 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999753
No 458
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.66 E-value=0.13 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
-.|+|.|++|+|||+|+++++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999854
No 459
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.65 E-value=0.12 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-+.|.||.|+|||||+++|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33468899999999999999999776
No 460
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.64 E-value=0.18 Score=50.97 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.-+.|.||+|+|||||++.|+..+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 368899999999999999999998654
No 461
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.62 E-value=0.15 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
-.|++.|++|+|||+|+..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 379999999999999999998653
No 462
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.62 E-value=0.15 Score=45.96 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|++++...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999998743
No 463
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.60 E-value=0.16 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|+.++....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 79999999999999999998653
No 464
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.60 E-value=0.15 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|+++++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999864
No 465
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.58 E-value=0.19 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
-++|+|+.|+|||||++.++...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 68899999999999999999764
No 466
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.57 E-value=0.15 Score=45.90 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
-.|+|.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999876
No 467
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.55 E-value=0.12 Score=45.03 Aligned_cols=20 Identities=45% Similarity=0.853 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVA 292 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA 292 (522)
.|+|.|++|+|||+|++++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999985
No 468
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.50 E-value=0.16 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999999864
No 469
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.45 E-value=0.14 Score=45.93 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
-.|+|.|++|+|||+|++.++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
No 470
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.41 E-value=0.15 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..|+|.|++|+|||+|++++....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 379999999999999999998653
No 471
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.27 E-value=0.17 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
-.|+|.|++|+|||+|+.++....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 379999999999999999997643
No 472
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.22 E-value=0.17 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999865
No 473
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.22 E-value=0.15 Score=45.46 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..|+|.|++|+|||+|++++....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999998653
No 474
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.21 E-value=0.16 Score=44.86 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~ 293 (522)
..|+|.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999864
No 475
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.15 E-value=0.15 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..-+.|.||.|+|||||++.|+...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3469999999999999999998865
No 476
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.14 E-value=0.18 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|++.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999854
No 477
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.13 E-value=0.32 Score=46.29 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEee
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC--GTTFFNVS 303 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l--g~~~i~v~ 303 (522)
.-+++.|.+|+||||++..+|..+ |..+..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 468899999999999999999776 55554444
No 478
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.12 E-value=0.21 Score=52.23 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATECGTT 298 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~lg~~ 298 (522)
.-+.|.||+|||||||++.|+......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 468899999999999999999998643
No 479
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=90.09 E-value=1.8 Score=48.54 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEeeh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC--------GTTFFNVSS 304 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l--------g~~~i~v~~ 304 (522)
+++|+.+|+|+|||..+-..+-.. +..++.+.+
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 489999999999999877666544 556666554
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.05 E-value=0.2 Score=49.95 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
...+|+|.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3468999999999999999999875 65554
No 481
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.05 E-value=0.15 Score=48.16 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 271 WKGVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 271 ~~~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
+.-+.|.|+.|+||||+++.|+.. +..++
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 345789999999999999999987 43333
No 482
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.04 E-value=0.17 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|++.++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999888764
No 483
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=90.01 E-value=2.2 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~ 293 (522)
+++|+.+|+|+|||..+-.++-
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 4899999999999997776654
No 484
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.00 E-value=0.17 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|++.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6999999999999999998864
No 485
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.99 E-value=0.18 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|+.+++..-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999998653
No 486
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.97 E-value=0.12 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 270 PWKGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 270 ~~~~vLL~GppGtGKT~LAraiA~~l 295 (522)
+..-+.|.||+|+|||||++.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44578999999999999999998765
No 487
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.95 E-value=0.28 Score=45.66 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh--CCcEEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC--GTTFFN 301 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l--g~~~i~ 301 (522)
-|.|.|+.|+||||+++.++..+ |..++.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 47788999999999999999988 444443
No 488
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.89 E-value=0.18 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
-.|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999998887654
No 489
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.88 E-value=0.19 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
-.|+|.|++|+|||+|++++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999854
No 490
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=89.87 E-value=0.13 Score=49.35 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=24.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 009911 273 GVLMFGPPGTGKTLLAKAVATECGTTFF 300 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~lg~~~i 300 (522)
-+.|+|++|||||++++.+...+|.+++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 4779999999999999999998897763
No 491
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.83 E-value=0.18 Score=46.89 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
..|+|.|.+|+|||+|+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999886
No 492
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.81 E-value=0.19 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~l 295 (522)
.-+.|.||+|+|||||+++|+...
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 458899999999999999998765
No 493
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.76 E-value=0.17 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVAT 293 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~ 293 (522)
..|+|.|++|+|||+|+++++.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999987
No 494
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.74 E-value=0.2 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++.++..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999865
No 495
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.70 E-value=0.2 Score=45.49 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 496
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.70 E-value=0.2 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999754
No 497
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.70 E-value=0.18 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|++.+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 69999999999999999998765
No 498
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.68 E-value=0.16 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 009911 273 GVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~ 294 (522)
.|+|.|++|+|||+|+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999754
No 499
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.66 E-value=0.19 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 009911 273 GVLMFGPPGTGKTLLAKAVATEC 295 (522)
Q Consensus 273 ~vLL~GppGtGKT~LAraiA~~l 295 (522)
.|+|.|++|+|||+|++.++...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 79999999999999999998643
No 500
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.66 E-value=0.2 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 009911 272 KGVLMFGPPGTGKTLLAKAVATE 294 (522)
Q Consensus 272 ~~vLL~GppGtGKT~LAraiA~~ 294 (522)
..|+|.|++|+|||+|++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
Done!